Query 010415
Match_columns 511
No_of_seqs 146 out of 208
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 00:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02905 beta-amylase 100.0 1E-175 3E-180 1388.1 43.8 453 42-494 182-699 (702)
2 PLN02705 beta-amylase 100.0 3E-169 6E-174 1336.4 41.6 415 77-493 212-678 (681)
3 PLN02801 beta-amylase 100.0 1E-167 2E-172 1308.3 41.0 402 106-511 11-471 (517)
4 PLN02803 beta-amylase 100.0 1E-163 3E-168 1282.6 39.8 392 106-510 81-527 (548)
5 PLN00197 beta-amylase; Provisi 100.0 4E-163 8E-168 1281.9 40.4 386 103-492 98-541 (573)
6 PLN02161 beta-amylase 100.0 9E-161 2E-165 1256.2 39.4 383 102-491 83-531 (531)
7 PF01373 Glyco_hydro_14: Glyco 100.0 1E-141 2E-146 1093.7 24.4 341 114-483 1-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.8 2.5E-21 5.4E-26 196.8 7.8 200 130-383 8-226 (374)
9 COG1874 LacA Beta-galactosidas 99.5 9E-14 2E-18 153.2 11.8 185 129-364 27-238 (673)
10 PF01301 Glyco_hydro_35: Glyco 98.8 2.9E-08 6.3E-13 101.2 9.7 119 129-278 21-146 (319)
11 PLN03059 beta-galactosidase; P 98.2 6E-06 1.3E-10 93.9 11.7 146 129-324 56-213 (840)
12 TIGR03356 BGL beta-galactosida 97.8 9.8E-05 2.1E-09 78.3 9.4 109 130-278 52-164 (427)
13 PF00150 Cellulase: Cellulase 97.5 0.00087 1.9E-08 64.0 10.3 126 132-269 21-164 (281)
14 smart00633 Glyco_10 Glycosyl h 97.4 0.0033 7.1E-08 61.9 14.1 220 155-469 3-228 (254)
15 PF00232 Glyco_hydro_1: Glycos 97.4 0.00051 1.1E-08 73.1 8.5 99 130-268 56-158 (455)
16 KOG0496 Beta-galactosidase [Ca 97.2 0.0026 5.5E-08 71.2 11.4 141 129-281 46-203 (649)
17 PRK09852 cryptic 6-phospho-bet 96.9 0.0035 7.5E-08 67.9 9.3 110 130-278 69-183 (474)
18 PF02638 DUF187: Glycosyl hydr 96.8 0.019 4.2E-07 58.9 13.1 133 128-279 15-161 (311)
19 PRK15014 6-phospho-beta-glucos 96.6 0.0069 1.5E-07 65.7 8.9 111 130-279 67-182 (477)
20 PRK13511 6-phospho-beta-galact 96.5 0.01 2.3E-07 64.0 8.7 109 129-278 51-163 (469)
21 TIGR01233 lacG 6-phospho-beta- 96.3 0.017 3.6E-07 62.5 9.1 109 129-278 50-162 (467)
22 PLN02814 beta-glucosidase 96.2 0.018 3.8E-07 63.1 9.0 110 130-278 75-188 (504)
23 PF14871 GHL6: Hypothetical gl 96.2 0.071 1.5E-06 48.9 11.3 111 136-269 4-124 (132)
24 PLN02849 beta-glucosidase 96.2 0.021 4.6E-07 62.4 9.3 110 130-278 77-190 (503)
25 PLN02998 beta-glucosidase 96.1 0.021 4.5E-07 62.4 8.9 110 130-278 80-193 (497)
26 PRK09589 celA 6-phospho-beta-g 95.9 0.027 5.9E-07 61.1 8.5 110 130-278 65-179 (476)
27 PRK09593 arb 6-phospho-beta-gl 95.9 0.032 6.9E-07 60.6 8.7 111 129-278 70-185 (478)
28 COG2723 BglB Beta-glucosidase/ 95.0 0.3 6.6E-06 53.4 12.5 144 130-321 57-205 (460)
29 PF00331 Glyco_hydro_10: Glyco 93.9 0.14 2.9E-06 52.7 6.7 134 137-323 26-169 (320)
30 cd03465 URO-D_like The URO-D _ 93.6 0.62 1.3E-05 46.7 10.5 117 134-264 170-297 (330)
31 PF01229 Glyco_hydro_39: Glyco 91.9 0.75 1.6E-05 49.8 9.0 103 131-270 38-151 (486)
32 PF14488 DUF4434: Domain of un 91.2 0.73 1.6E-05 43.7 7.2 58 129-190 17-84 (166)
33 PRK02412 aroD 3-dehydroquinate 91.1 1.7 3.6E-05 43.5 10.0 123 124-286 86-211 (253)
34 PF07745 Glyco_hydro_53: Glyco 90.9 0.4 8.6E-06 50.4 5.6 54 135-193 27-80 (332)
35 PRK10785 maltodextrin glucosid 90.1 6.2 0.00014 44.2 14.3 156 130-323 177-363 (598)
36 PRK11572 copper homeostasis pr 89.9 0.87 1.9E-05 46.3 6.8 73 110-193 51-126 (248)
37 PF10566 Glyco_hydro_97: Glyco 89.1 0.58 1.3E-05 48.1 4.9 106 105-237 81-186 (273)
38 cd00465 URO-D_CIMS_like The UR 88.3 0.81 1.7E-05 45.4 5.3 117 132-264 144-274 (306)
39 PF03932 CutC: CutC family; I 88.1 0.88 1.9E-05 44.8 5.3 71 108-193 48-121 (201)
40 PF03659 Glyco_hydro_71: Glyco 87.6 1.4 3E-05 47.1 6.8 57 130-195 15-71 (386)
41 cd00502 DHQase_I Type I 3-dehy 87.4 7.8 0.00017 37.6 11.3 152 124-318 67-221 (225)
42 PF01487 DHquinase_I: Type I 3 87.3 6.9 0.00015 37.8 10.8 130 111-286 55-188 (224)
43 TIGR02104 pulA_typeI pullulana 85.8 7.2 0.00016 43.7 11.4 147 131-323 163-339 (605)
44 TIGR01093 aroD 3-dehydroquinat 85.8 7.6 0.00016 38.0 10.3 122 124-286 69-193 (228)
45 PF00128 Alpha-amylase: Alpha 84.4 2.3 5E-05 40.6 6.0 65 130-197 2-81 (316)
46 TIGR01463 mtaA_cmuA methyltran 84.3 1.7 3.6E-05 44.4 5.3 58 135-196 183-243 (340)
47 PHA00442 host recBCD nuclease 84.0 1.8 3.9E-05 35.2 4.2 27 136-181 30-56 (59)
48 PRK01060 endonuclease IV; Prov 83.3 2.1 4.7E-05 41.9 5.4 63 116-185 1-63 (281)
49 PRK13111 trpA tryptophan synth 82.1 7.6 0.00017 39.4 8.9 90 109-229 88-178 (258)
50 cd03308 CmuA_CmuC_like CmuA_Cm 81.6 2.4 5.1E-05 44.6 5.2 78 111-195 173-277 (378)
51 cd03311 CIMS_C_terminal_like C 79.3 8.6 0.00019 39.2 8.2 96 131-228 154-252 (332)
52 smart00642 Aamy Alpha-amylase 78.4 9.1 0.0002 36.1 7.5 68 129-196 16-97 (166)
53 TIGR03234 OH-pyruv-isom hydrox 78.2 11 0.00023 36.6 8.1 42 133-186 15-56 (254)
54 PLN02361 alpha-amylase 77.3 7.8 0.00017 41.8 7.6 65 131-198 28-106 (401)
55 PF02065 Melibiase: Melibiase; 76.9 13 0.00029 40.0 9.1 79 129-211 55-144 (394)
56 PRK13209 L-xylulose 5-phosphat 76.1 5.7 0.00012 39.0 5.8 66 117-188 8-76 (283)
57 TIGR00433 bioB biotin syntheta 74.9 7.4 0.00016 38.7 6.2 54 135-190 123-179 (296)
58 PF01261 AP_endonuc_2: Xylose 74.8 2.9 6.2E-05 37.9 3.1 45 138-187 1-45 (213)
59 TIGR00542 hxl6Piso_put hexulos 73.8 6.6 0.00014 38.7 5.5 55 131-188 15-71 (279)
60 PRK10150 beta-D-glucuronidase; 73.4 72 0.0016 35.6 14.0 47 129-189 310-356 (604)
61 cd06592 GH31_glucosidase_KIAA1 73.2 17 0.00036 37.2 8.4 83 129-227 27-116 (303)
62 COG2730 BglC Endoglucanase [Ca 73.1 22 0.00047 38.0 9.5 109 130-279 66-188 (407)
63 cd06593 GH31_xylosidase_YicI Y 72.6 20 0.00044 36.3 8.8 88 128-229 20-114 (308)
64 COG3693 XynA Beta-1,4-xylanase 71.8 2.6 5.6E-05 44.8 2.2 184 148-396 59-263 (345)
65 KOG0626 Beta-glucosidase, lact 71.6 18 0.00039 40.7 8.7 69 131-211 90-163 (524)
66 PLN02229 alpha-galactosidase 71.5 7.8 0.00017 42.4 5.9 56 129-185 77-144 (427)
67 cd03307 Mta_CmuA_like MtaA_Cmu 70.8 4.8 0.0001 41.0 3.9 55 136-196 175-232 (326)
68 COG3142 CutC Uncharacterized p 70.7 7.6 0.00017 39.6 5.2 76 109-195 50-128 (241)
69 TIGR01515 branching_enzym alph 70.5 8.9 0.00019 43.1 6.2 56 130-191 154-228 (613)
70 COG1649 Uncharacterized protei 70.5 39 0.00085 37.1 10.8 127 127-269 59-199 (418)
71 PRK09856 fructoselysine 3-epim 70.2 11 0.00024 36.7 6.2 51 133-190 14-68 (275)
72 TIGR02402 trehalose_TreZ malto 69.0 9.6 0.00021 42.3 6.0 61 130-195 109-186 (542)
73 PF08821 CGGC: CGGC domain; I 68.8 16 0.00035 32.7 6.3 56 131-192 51-107 (107)
74 COG3867 Arabinogalactan endo-1 68.1 12 0.00026 40.0 6.1 58 134-193 65-126 (403)
75 PF01026 TatD_DNase: TatD rela 67.9 31 0.00067 34.0 8.8 47 133-192 15-62 (255)
76 PLN02591 tryptophan synthase 67.8 30 0.00066 35.1 8.8 90 109-229 77-167 (250)
77 PRK06252 methylcobalamin:coenz 67.5 6 0.00013 40.3 3.8 55 135-195 183-240 (339)
78 TIGR02631 xylA_Arthro xylose i 66.9 3.8 8.3E-05 43.6 2.3 56 129-189 29-88 (382)
79 PRK08508 biotin synthase; Prov 66.4 38 0.00083 34.3 9.3 54 129-188 40-94 (279)
80 PRK13210 putative L-xylulose 5 65.4 16 0.00034 35.7 6.1 53 132-188 16-71 (284)
81 cd03309 CmuC_like CmuC_like. P 65.2 7.1 0.00015 40.6 3.9 115 138-266 161-291 (321)
82 PRK12313 glycogen branching en 64.4 14 0.0003 41.7 6.2 73 113-191 150-242 (633)
83 PRK00115 hemE uroporphyrinogen 64.1 12 0.00026 38.7 5.3 76 135-226 189-269 (346)
84 PF00290 Trp_syntA: Tryptophan 63.9 34 0.00074 35.0 8.3 92 107-229 84-176 (259)
85 PF05706 CDKN3: Cyclin-depende 63.5 4.7 0.0001 39.1 2.1 52 126-185 51-103 (168)
86 PRK13398 3-deoxy-7-phosphohept 63.2 29 0.00063 35.5 7.7 72 119-192 28-99 (266)
87 PLN02808 alpha-galactosidase 62.8 14 0.0003 40.0 5.6 57 129-185 46-113 (386)
88 PRK09989 hypothetical protein; 62.3 19 0.00041 35.2 6.0 42 133-186 16-57 (258)
89 cd04724 Tryptophan_synthase_al 61.9 40 0.00086 33.5 8.3 62 110-190 76-137 (242)
90 PRK10933 trehalose-6-phosphate 61.5 16 0.00036 40.6 6.1 64 129-195 30-107 (551)
91 cd00717 URO-D Uroporphyrinogen 61.0 9.9 0.00022 38.8 4.0 74 137-226 182-260 (335)
92 PF10566 Glyco_hydro_97: Glyco 60.7 20 0.00044 37.0 6.2 67 130-197 30-100 (273)
93 PRK04302 triosephosphate isome 59.5 22 0.00047 34.7 5.9 47 136-192 76-122 (223)
94 TIGR01464 hemE uroporphyrinoge 59.5 16 0.00036 37.4 5.3 74 137-226 185-263 (338)
95 PF01791 DeoC: DeoC/LacD famil 59.0 6.5 0.00014 38.4 2.2 76 110-188 56-131 (236)
96 PF01208 URO-D: Uroporphyrinog 58.6 46 0.001 33.8 8.2 111 136-261 186-307 (343)
97 PF13653 GDPD_2: Glycerophosph 57.9 9.5 0.00021 27.3 2.3 18 135-152 10-27 (30)
98 PLN02389 biotin synthase 57.1 21 0.00045 38.2 5.7 46 134-185 177-229 (379)
99 PRK09997 hydroxypyruvate isome 56.3 22 0.00048 34.8 5.4 41 133-185 16-56 (258)
100 CHL00200 trpA tryptophan synth 56.3 61 0.0013 33.1 8.6 92 109-231 90-182 (263)
101 cd02742 GH20_hexosaminidase Be 56.2 1.9E+02 0.0041 29.7 12.2 125 126-267 10-183 (303)
102 PF01055 Glyco_hydro_31: Glyco 56.0 28 0.0006 36.9 6.4 85 129-229 40-134 (441)
103 TIGR02102 pullulan_Gpos pullul 55.8 22 0.00049 43.2 6.2 62 130-191 478-577 (1111)
104 PRK12595 bifunctional 3-deoxy- 55.8 39 0.00085 36.0 7.4 114 111-247 118-234 (360)
105 cd06565 GH20_GcnA-like Glycosy 54.9 1.9E+02 0.004 29.9 11.9 132 127-267 12-177 (301)
106 TIGR02456 treS_nterm trehalose 54.8 37 0.00079 37.6 7.3 64 129-195 25-102 (539)
107 TIGR02403 trehalose_treC alpha 54.7 32 0.00069 38.2 6.8 65 129-195 24-101 (543)
108 PRK13125 trpA tryptophan synth 54.6 38 0.00083 33.5 6.8 64 110-190 74-137 (244)
109 PRK09441 cytoplasmic alpha-amy 54.6 30 0.00065 37.5 6.5 66 131-196 21-108 (479)
110 PRK10658 putative alpha-glucos 54.4 52 0.0011 37.9 8.6 87 130-230 281-374 (665)
111 PLN02692 alpha-galactosidase 53.1 25 0.00053 38.5 5.5 208 129-395 70-299 (412)
112 cd07944 DRE_TIM_HOA_like 4-hyd 52.9 51 0.0011 33.4 7.4 77 135-231 85-166 (266)
113 PRK13753 dihydropteroate synth 52.1 2E+02 0.0042 30.1 11.6 103 120-243 13-122 (279)
114 cd01310 TatD_DNAse TatD like p 51.9 1.2E+02 0.0026 28.7 9.3 47 133-192 16-62 (251)
115 PF02836 Glyco_hydro_2_C: Glyc 51.7 33 0.00071 34.5 5.8 50 128-191 32-81 (298)
116 PRK08195 4-hyroxy-2-oxovalerat 50.6 40 0.00087 35.4 6.5 74 136-229 92-170 (337)
117 PRK07360 FO synthase subunit 2 50.2 15 0.00033 38.7 3.4 48 134-186 162-218 (371)
118 TIGR02103 pullul_strch alpha-1 49.3 1.5E+02 0.0033 35.7 11.4 25 134-158 288-314 (898)
119 PRK05222 5-methyltetrahydropte 49.2 25 0.00054 40.9 5.1 127 131-269 580-718 (758)
120 PLN02877 alpha-amylase/limit d 48.7 30 0.00065 41.6 5.7 63 133-195 374-493 (970)
121 PRK09505 malS alpha-amylase; R 47.1 42 0.00092 38.8 6.5 62 130-191 228-314 (683)
122 cd01299 Met_dep_hydrolase_A Me 47.0 57 0.0012 32.8 6.7 64 128-195 116-182 (342)
123 PLN00196 alpha-amylase; Provis 46.5 62 0.0013 35.3 7.3 64 130-196 42-119 (428)
124 TIGR03551 F420_cofH 7,8-dideme 46.5 16 0.00035 37.8 2.8 54 135-188 141-198 (343)
125 PRK09936 hypothetical protein; 46.3 40 0.00087 35.6 5.6 52 130-190 36-91 (296)
126 PRK09875 putative hydrolase; P 45.3 3.8E+02 0.0082 27.9 13.6 67 124-211 26-94 (292)
127 cd00958 DhnA Class I fructose- 44.4 47 0.001 32.2 5.5 58 130-193 74-131 (235)
128 cd06564 GH20_DspB_LnbB-like Gl 44.0 2.3E+02 0.0049 29.4 10.7 118 125-269 10-155 (326)
129 PRK04326 methionine synthase; 43.9 45 0.00098 34.1 5.6 78 132-226 161-239 (330)
130 TIGR03586 PseI pseudaminic aci 43.8 52 0.0011 34.8 6.0 131 112-262 1-158 (327)
131 TIGR03217 4OH_2_O_val_ald 4-hy 43.7 66 0.0014 33.9 6.8 75 135-229 90-169 (333)
132 PLN02433 uroporphyrinogen deca 43.6 46 0.00099 34.6 5.6 77 136-226 183-262 (345)
133 PRK14706 glycogen branching en 43.4 50 0.0011 37.8 6.3 61 126-191 161-239 (639)
134 TIGR03849 arch_ComA phosphosul 43.4 51 0.0011 33.7 5.7 69 109-190 53-121 (237)
135 TIGR03699 mena_SCO4550 menaqui 43.4 21 0.00045 36.7 3.0 48 135-186 143-198 (340)
136 cd07491 Peptidases_S8_7 Peptid 43.3 1.1E+02 0.0024 30.4 8.0 72 129-209 86-159 (247)
137 PRK08508 biotin synthase; Prov 42.6 31 0.00067 34.9 4.1 45 135-185 102-153 (279)
138 PF05226 CHASE2: CHASE2 domain 42.6 3E+02 0.0065 27.6 11.0 95 130-234 62-162 (310)
139 PRK06256 biotin synthase; Vali 42.1 27 0.00058 35.8 3.6 46 135-186 152-204 (336)
140 PRK07094 biotin synthase; Prov 41.8 36 0.00077 34.6 4.4 51 135-186 129-182 (323)
141 PF01717 Meth_synt_2: Cobalami 41.7 52 0.0011 33.6 5.6 87 131-229 153-245 (324)
142 TIGR02090 LEU1_arch isopropylm 40.5 55 0.0012 34.6 5.7 252 134-422 73-350 (363)
143 TIGR00423 radical SAM domain p 40.4 29 0.00062 35.4 3.5 52 134-185 106-161 (309)
144 TIGR00262 trpA tryptophan synt 40.1 68 0.0015 32.4 6.1 62 110-190 87-148 (256)
145 PRK15108 biotin synthase; Prov 39.2 4E+02 0.0088 28.1 11.7 54 130-190 77-130 (345)
146 PRK15452 putative protease; Pr 39.1 32 0.0007 37.7 3.8 40 109-153 58-97 (443)
147 PRK14510 putative bifunctional 39.0 1.8E+02 0.0039 36.1 10.3 62 136-197 191-276 (1221)
148 PRK05402 glycogen branching en 38.3 73 0.0016 36.8 6.6 62 127-193 260-340 (726)
149 TIGR02401 trehalose_TreY malto 38.1 71 0.0015 38.0 6.6 65 130-195 14-91 (825)
150 PRK03906 mannonate dehydratase 37.2 52 0.0011 35.6 5.0 50 137-190 15-64 (385)
151 TIGR03700 mena_SCO4494 putativ 37.0 35 0.00075 35.7 3.5 53 134-186 149-205 (351)
152 PLN02960 alpha-amylase 36.8 84 0.0018 37.7 6.9 57 128-191 412-486 (897)
153 TIGR02529 EutJ ethanolamine ut 36.7 94 0.002 30.8 6.3 64 115-190 24-96 (239)
154 PLN02475 5-methyltetrahydropte 36.2 60 0.0013 38.1 5.6 84 131-226 585-674 (766)
155 TIGR00695 uxuA mannonate dehyd 36.1 59 0.0013 35.5 5.1 50 137-190 15-64 (394)
156 PF09184 PPP4R2: PPP4R2; Inte 36.0 8.3 0.00018 39.9 -1.1 30 460-489 96-126 (288)
157 PRK08445 hypothetical protein; 36.0 41 0.00089 35.4 3.9 55 135-189 144-202 (348)
158 TIGR00677 fadh2_euk methylenet 36.0 82 0.0018 32.3 6.0 70 134-215 147-225 (281)
159 PRK14511 maltooligosyl trehalo 35.8 1.4E+02 0.003 36.0 8.4 65 130-195 18-95 (879)
160 PF04187 DUF399: Protein of un 35.4 27 0.00058 34.3 2.3 20 166-185 86-105 (213)
161 COG0149 TpiA Triosephosphate i 35.4 64 0.0014 33.2 5.0 44 137-190 80-127 (251)
162 COG2352 Ppc Phosphoenolpyruvat 35.3 34 0.00074 40.6 3.4 49 146-201 558-612 (910)
163 PRK00042 tpiA triosephosphate 35.2 61 0.0013 33.0 4.8 44 137-190 78-125 (250)
164 smart00518 AP2Ec AP endonuclea 35.1 97 0.0021 30.3 6.1 52 132-185 10-61 (273)
165 PRK15108 biotin synthase; Prov 34.9 61 0.0013 34.1 4.9 45 135-185 136-187 (345)
166 PF00682 HMGL-like: HMGL-like 34.7 2.2E+02 0.0047 27.5 8.4 108 130-266 65-181 (237)
167 PRK12858 tagatose 1,6-diphosph 34.5 94 0.002 33.1 6.2 55 133-187 107-161 (340)
168 cd07943 DRE_TIM_HOA 4-hydroxy- 34.5 1E+02 0.0022 30.8 6.2 45 136-190 89-133 (263)
169 COG3250 LacZ Beta-galactosidas 34.3 1.3E+02 0.0028 35.8 7.8 46 126-185 315-360 (808)
170 TIGR00419 tim triosephosphate 34.1 79 0.0017 31.3 5.3 86 137-262 73-161 (205)
171 PRK13655 phosphoenolpyruvate c 34.0 87 0.0019 35.2 6.1 98 167-269 216-323 (494)
172 PRK00009 phosphoenolpyruvate c 34.0 44 0.00096 40.0 4.1 57 167-226 581-641 (911)
173 PF02679 ComA: (2R)-phospho-3- 33.8 59 0.0013 33.3 4.5 89 108-213 65-153 (244)
174 PF04476 DUF556: Protein of un 33.6 53 0.0012 33.6 4.1 44 138-185 137-183 (235)
175 TIGR00010 hydrolase, TatD fami 32.7 1.2E+02 0.0025 28.8 6.1 46 134-192 17-62 (252)
176 PRK08673 3-deoxy-7-phosphohept 32.6 1.1E+02 0.0024 32.6 6.4 109 119-248 94-210 (335)
177 PRK06233 hypothetical protein; 32.5 89 0.0019 33.2 5.7 138 131-269 170-330 (372)
178 cd03310 CIMS_like CIMS - Cobal 32.4 1.7E+02 0.0037 29.5 7.5 60 131-196 150-211 (321)
179 smart00854 PGA_cap Bacterial c 32.3 99 0.0021 30.2 5.6 57 130-193 158-214 (239)
180 cd06419 GH25_muramidase_2 Unch 32.2 4.5E+02 0.0098 25.5 10.0 51 137-194 21-71 (190)
181 COG1082 IolE Sugar phosphate i 32.1 81 0.0018 30.4 5.0 48 131-185 14-61 (274)
182 cd07948 DRE_TIM_HCS Saccharomy 31.8 80 0.0017 32.0 5.1 66 136-213 75-146 (262)
183 cd07947 DRE_TIM_Re_CS Clostrid 31.7 2.4E+02 0.0053 29.0 8.5 84 135-229 77-176 (279)
184 PRK12677 xylose isomerase; Pro 31.6 1E+02 0.0022 33.0 6.1 52 132-188 31-86 (384)
185 cd00408 DHDPS-like Dihydrodipi 31.5 3E+02 0.0064 27.4 8.9 112 108-246 64-182 (281)
186 PRK02227 hypothetical protein; 31.3 64 0.0014 33.1 4.2 46 136-185 135-183 (238)
187 PRK06520 5-methyltetrahydropte 31.2 91 0.002 33.1 5.6 68 131-199 169-247 (368)
188 cd00019 AP2Ec AP endonuclease 31.1 1.4E+02 0.0031 29.3 6.6 52 132-185 10-62 (279)
189 cd06604 GH31_glucosidase_II_Ma 31.0 2.6E+02 0.0056 29.1 8.7 85 128-228 20-113 (339)
190 PF05378 Hydant_A_N: Hydantoin 30.7 1E+02 0.0022 29.4 5.4 45 130-182 132-176 (176)
191 PRK03195 hypothetical protein; 30.7 85 0.0019 30.9 4.9 47 251-304 134-181 (186)
192 smart00481 POLIIIAc DNA polyme 30.7 1.5E+02 0.0032 23.2 5.4 42 133-185 16-57 (67)
193 PRK09993 C-lysozyme inhibitor; 30.7 37 0.0008 32.7 2.3 28 223-250 107-135 (153)
194 PRK00957 methionine synthase; 30.6 1.9E+02 0.004 29.5 7.5 81 131-229 143-224 (305)
195 TIGR02884 spore_pdaA delta-lac 30.3 1E+02 0.0022 30.2 5.3 81 374-470 143-223 (224)
196 PRK12331 oxaloacetate decarbox 30.1 1.2E+02 0.0026 33.5 6.3 51 131-191 95-145 (448)
197 cd00598 GH18_chitinase-like Th 30.0 1.4E+02 0.0031 27.6 6.1 69 109-181 63-136 (210)
198 COG4130 Predicted sugar epimer 29.9 52 0.0011 33.9 3.3 74 104-182 90-164 (272)
199 PLN03231 putative alpha-galact 29.9 98 0.0021 33.3 5.5 64 129-196 15-109 (357)
200 PLN02784 alpha-amylase 29.3 1.2E+02 0.0025 36.6 6.4 63 131-196 520-596 (894)
201 cd08627 PI-PLCc_gamma1 Catalyt 29.3 49 0.0011 33.7 3.0 31 125-156 23-53 (229)
202 PRK13210 putative L-xylulose 5 29.1 1E+02 0.0022 30.1 5.1 59 132-192 94-154 (284)
203 COG1809 (2R)-phospho-3-sulfola 29.0 1.1E+02 0.0023 31.7 5.3 47 131-185 89-135 (258)
204 cd08560 GDPD_EcGlpQ_like_1 Gly 28.9 67 0.0015 34.3 4.1 51 133-187 246-296 (356)
205 COG0159 TrpA Tryptophan syntha 28.8 3.2E+02 0.0068 28.6 8.7 92 109-231 93-185 (265)
206 COG1619 LdcA Uncharacterized p 28.6 1.5E+02 0.0033 31.3 6.6 93 121-222 15-107 (313)
207 cd08212 RuBisCO_large_I Ribulo 28.6 1.1E+02 0.0024 34.0 5.7 51 131-192 225-275 (450)
208 PLN02447 1,4-alpha-glucan-bran 28.5 96 0.0021 36.6 5.5 64 126-194 244-326 (758)
209 PRK14566 triosephosphate isome 28.4 91 0.002 32.2 4.8 44 137-190 87-134 (260)
210 PRK13575 3-dehydroquinate dehy 28.3 2.2E+02 0.0047 28.7 7.3 57 125-192 75-133 (238)
211 PRK13397 3-deoxy-7-phosphohept 28.2 1.8E+02 0.0039 30.0 6.8 105 124-244 21-126 (250)
212 PRK12568 glycogen branching en 28.1 1.4E+02 0.0029 35.2 6.6 59 128-191 265-341 (730)
213 TIGR00559 pdxJ pyridoxine 5'-p 28.0 66 0.0014 33.0 3.7 51 135-185 134-185 (237)
214 PRK09121 5-methyltetrahydropte 28.0 95 0.0021 32.6 5.0 61 131-199 155-216 (339)
215 TIGR03569 NeuB_NnaB N-acetylne 27.9 73 0.0016 33.7 4.1 114 132-262 16-157 (329)
216 cd03319 L-Ala-DL-Glu_epimerase 27.9 62 0.0013 32.8 3.5 58 126-199 235-293 (316)
217 cd06568 GH20_SpHex_like A subg 27.9 7.3E+02 0.016 26.1 12.1 131 125-267 11-187 (329)
218 PF01261 AP_endonuc_2: Xylose 27.8 58 0.0012 29.5 3.0 63 131-197 70-136 (213)
219 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.5 1.8E+02 0.0039 29.5 6.7 50 131-190 90-139 (275)
220 PF13380 CoA_binding_2: CoA bi 27.5 1.3E+02 0.0029 26.6 5.1 44 128-185 62-105 (116)
221 PLN02417 dihydrodipicolinate s 27.5 2.7E+02 0.0058 28.3 7.9 98 129-246 80-180 (280)
222 cd06591 GH31_xylosidase_XylS X 27.0 1.7E+02 0.0038 30.1 6.6 87 129-230 21-115 (319)
223 TIGR03234 OH-pyruv-isom hydrox 27.0 1.7E+02 0.0038 28.3 6.3 57 132-192 84-144 (254)
224 cd08592 PI-PLCc_gamma Catalyti 26.9 55 0.0012 33.3 2.9 31 125-156 23-53 (229)
225 TIGR00539 hemN_rel putative ox 26.9 1.4E+02 0.0031 31.1 6.0 52 135-191 100-159 (360)
226 PF03786 UxuA: D-mannonate deh 26.9 57 0.0012 35.1 3.1 50 137-190 16-66 (351)
227 TIGR00674 dapA dihydrodipicoli 26.7 3.3E+02 0.0072 27.4 8.4 113 108-246 65-183 (285)
228 PF01136 Peptidase_U32: Peptid 26.7 62 0.0013 31.2 3.1 36 132-185 2-39 (233)
229 TIGR02751 PEPCase_arch phospho 26.6 1.9E+02 0.004 32.8 7.1 54 167-226 224-282 (506)
230 cd06562 GH20_HexA_HexB-like Be 26.5 7.6E+02 0.017 26.0 11.3 117 126-269 12-149 (348)
231 PF00834 Ribul_P_3_epim: Ribul 26.4 62 0.0014 31.7 3.1 25 130-154 10-34 (201)
232 cd06563 GH20_chitobiase-like T 26.4 7.3E+02 0.016 26.1 11.1 117 126-269 12-165 (357)
233 cd03174 DRE_TIM_metallolyase D 26.2 1.6E+02 0.0036 28.4 6.0 58 135-194 77-141 (265)
234 PRK08005 epimerase; Validated 26.0 74 0.0016 31.6 3.6 44 129-180 10-55 (210)
235 TIGR01371 met_syn_B12ind 5-met 25.8 1.9E+02 0.004 34.0 7.2 84 131-224 574-661 (750)
236 cd07381 MPP_CapA CapA and rela 25.8 1.9E+02 0.0041 28.1 6.3 57 130-193 160-216 (239)
237 cd02809 alpha_hydroxyacid_oxid 25.8 5.9E+02 0.013 26.0 10.1 129 130-268 127-286 (299)
238 COG2089 SpsE Sialic acid synth 25.6 85 0.0019 33.8 4.1 134 112-265 14-174 (347)
239 PTZ00333 triosephosphate isome 25.5 1.5E+02 0.0032 30.4 5.6 43 138-190 82-128 (255)
240 PF01902 ATP_bind_4: ATP-bindi 25.5 1.1E+02 0.0025 30.4 4.8 60 372-434 123-182 (218)
241 cd00945 Aldolase_Class_I Class 25.5 1.8E+02 0.0039 26.4 5.7 27 130-156 63-89 (201)
242 PRK09997 hydroxypyruvate isome 25.3 1.9E+02 0.0042 28.3 6.3 56 132-192 85-145 (258)
243 PRK09240 thiH thiamine biosynt 25.2 1.5E+02 0.0033 31.4 5.9 46 135-185 163-219 (371)
244 cd07939 DRE_TIM_NifV Streptomy 25.1 1.6E+02 0.0034 29.4 5.8 50 135-186 72-127 (259)
245 PF03740 PdxJ: Pyridoxal phosp 25.1 38 0.00083 34.6 1.4 52 135-186 135-189 (239)
246 PF13200 DUF4015: Putative gly 25.0 7.3E+02 0.016 26.4 10.8 160 128-323 9-182 (316)
247 PTZ00170 D-ribulose-5-phosphat 24.8 80 0.0017 31.2 3.6 46 129-182 16-63 (228)
248 COG1523 PulA Type II secretory 24.8 1.4E+02 0.0031 34.9 6.0 94 100-206 177-302 (697)
249 TIGR00542 hxl6Piso_put hexulos 24.5 1.4E+02 0.003 29.5 5.2 59 132-192 94-154 (279)
250 TIGR02026 BchE magnesium-proto 24.5 1.5E+02 0.0033 32.5 5.9 48 136-188 288-342 (497)
251 PRK07329 hypothetical protein; 24.5 2E+02 0.0043 28.6 6.2 41 372-426 197-241 (246)
252 PRK03170 dihydrodipicolinate s 24.4 4.6E+02 0.0099 26.4 8.9 113 108-246 68-186 (292)
253 PF02126 PTE: Phosphotriestera 24.2 1.7E+02 0.0038 30.6 6.0 63 130-211 36-98 (308)
254 PRK05799 coproporphyrinogen II 24.2 1.3E+02 0.0028 31.4 5.1 44 136-184 100-150 (374)
255 COG0620 MetE Methionine syntha 24.2 1.7E+02 0.0036 31.1 6.0 65 131-201 157-227 (330)
256 COG1099 Predicted metal-depend 24.2 44 0.00095 34.4 1.6 57 135-193 14-74 (254)
257 cd04741 DHOD_1A_like Dihydroor 24.1 2.2E+02 0.0048 29.1 6.7 69 111-196 158-251 (294)
258 COG2876 AroA 3-deoxy-D-arabino 24.0 1.6E+02 0.0035 31.1 5.6 53 131-183 228-282 (286)
259 PRK05926 hypothetical protein; 23.8 70 0.0015 34.2 3.2 56 134-189 168-227 (370)
260 cd00311 TIM Triosephosphate is 23.6 1.7E+02 0.0036 29.7 5.6 44 137-190 76-123 (242)
261 PRK14040 oxaloacetate decarbox 23.5 2.2E+02 0.0047 32.7 7.0 51 131-191 96-146 (593)
262 CHL00040 rbcL ribulose-1,5-bis 23.4 1.5E+02 0.0033 33.1 5.7 53 130-192 246-298 (475)
263 PRK08091 ribulose-phosphate 3- 23.4 87 0.0019 31.6 3.6 26 129-154 22-47 (228)
264 PRK14565 triosephosphate isome 23.2 1.3E+02 0.0029 30.5 4.8 44 137-190 77-124 (237)
265 PTZ00445 p36-lilke protein; Pr 23.1 1.8E+02 0.004 29.6 5.7 61 128-188 25-97 (219)
266 TIGR02100 glgX_debranch glycog 23.0 1.3E+02 0.0029 34.8 5.3 64 132-195 182-272 (688)
267 TIGR03128 RuMP_HxlA 3-hexulose 22.9 1.8E+02 0.0039 27.4 5.4 43 137-190 68-110 (206)
268 TIGR03679 arCOG00187 arCOG0018 22.6 1.7E+02 0.0037 28.7 5.4 60 372-434 124-183 (218)
269 COG2342 Predicted extracellula 22.6 1.5E+02 0.0032 31.5 5.1 58 131-188 125-190 (300)
270 smart00729 Elp3 Elongator prot 22.6 2.7E+02 0.0058 24.8 6.2 48 135-189 100-157 (216)
271 cd06599 GH31_glycosidase_Aec37 22.6 2.3E+02 0.005 29.2 6.6 87 131-229 28-121 (317)
272 TIGR02351 thiH thiazole biosyn 22.5 1.5E+02 0.0033 31.2 5.3 45 135-184 162-216 (366)
273 PRK03705 glycogen debranching 22.4 1.1E+02 0.0024 35.4 4.5 54 137-194 184-268 (658)
274 TIGR02512 Fe_only_hydrog hydro 22.4 4.3E+02 0.0092 28.1 8.6 86 132-260 110-197 (374)
275 PLN02681 proline dehydrogenase 22.4 1.1E+03 0.024 26.2 13.5 52 129-184 92-146 (455)
276 PRK00111 hypothetical protein; 22.3 1.4E+02 0.0031 29.4 4.7 47 251-304 128-175 (180)
277 PRK11449 putative deoxyribonuc 22.2 2.9E+02 0.0062 27.9 7.0 58 122-192 6-66 (258)
278 COG1856 Uncharacterized homolo 21.8 91 0.002 32.4 3.3 56 135-192 100-161 (275)
279 cd06602 GH31_MGAM_SI_GAA This 21.7 9E+02 0.02 25.4 10.7 92 128-230 20-120 (339)
280 TIGR03326 rubisco_III ribulose 21.6 1.6E+02 0.0034 32.4 5.3 48 130-187 222-269 (412)
281 cd00950 DHDPS Dihydrodipicolin 21.6 2E+02 0.0044 28.7 5.8 58 114-181 7-65 (284)
282 PRK14507 putative bifunctional 21.5 2.9E+02 0.0064 35.6 8.1 65 130-195 756-833 (1693)
283 TIGR00423 radical SAM domain p 21.5 2.6E+02 0.0057 28.5 6.7 51 130-187 37-87 (309)
284 PRK09856 fructoselysine 3-epim 21.3 1.3E+02 0.0028 29.4 4.2 55 131-185 89-145 (275)
285 PLN02429 triosephosphate isome 21.3 1.5E+02 0.0032 31.6 4.9 44 137-190 139-186 (315)
286 PRK08883 ribulose-phosphate 3- 21.2 1E+02 0.0023 30.5 3.6 109 130-258 10-127 (220)
287 cd06589 GH31 The enzymes of gl 21.2 2.4E+02 0.0052 28.2 6.1 58 128-189 20-86 (265)
288 cd06600 GH31_MGAM-like This fa 21.1 9.3E+02 0.02 24.9 10.7 87 128-228 20-113 (317)
289 PRK14057 epimerase; Provisiona 20.8 1.1E+02 0.0023 31.7 3.6 26 129-154 29-54 (254)
290 PRK08745 ribulose-phosphate 3- 20.6 1.1E+02 0.0023 30.7 3.6 110 129-258 13-131 (223)
291 cd02871 GH18_chitinase_D-like 20.6 1.5E+02 0.0033 30.4 4.7 46 106-151 234-292 (312)
292 PRK14705 glycogen branching en 20.6 1.7E+02 0.0037 36.4 5.8 53 131-190 764-834 (1224)
293 PF01183 Glyco_hydro_25: Glyco 20.3 2.4E+02 0.0051 26.3 5.6 109 138-269 12-120 (181)
294 TIGR01748 rhaA L-rhamnose isom 20.3 1.2E+03 0.027 26.0 12.1 142 126-328 63-216 (414)
295 cd08179 NADPH_BDH NADPH-depend 20.3 1.4E+02 0.0029 31.5 4.4 59 133-203 40-98 (375)
296 COG2159 Predicted metal-depend 20.2 4.6E+02 0.01 27.0 8.1 79 133-222 114-195 (293)
297 PRK13396 3-deoxy-7-phosphohept 20.1 3.7E+02 0.008 29.0 7.6 114 119-248 102-218 (352)
298 PF03799 FtsQ: Cell division p 20.1 2E+02 0.0044 24.0 4.7 60 217-279 7-67 (117)
No 1
>PLN02905 beta-amylase
Probab=100.00 E-value=1.2e-175 Score=1388.12 Aligned_cols=453 Identities=75% Similarity=1.322 Sum_probs=435.9
Q ss_pred cccceecccccccccccc-------------cccchhhhcc-cccccccCCCCCCCCcccccccccccCCCCCCCCCCCC
Q 010415 42 HSLTYCNVTYCNACRFKR-------------TQFRTLAAIG-EWEEETEDDPHGGDSVDAADDMKAVHLPPKLPERDFAG 107 (511)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (511)
-|.+|+|++++|+|++|+ .++..+++|. ++...++++.++++|++|++++||++.++.+++.++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 261 (702)
T PLN02905 182 VSSGYRSSVEYNACRMKGVFVPASSPYDVSPSQSSELVVVMGDRGSQNENHGLIGGSVDAINSKQILDIPPKLTERDFAG 261 (702)
T ss_pred cccccccccccchhhhccccccCCCccccccCCCCcceeEeecccccccccCCccCcccccchhhhhhhhcccccccccC
Confidence 478999999999999999 4445565554 78899999999889999999999997779999999999
Q ss_pred CCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEE
Q 010415 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (511)
Q Consensus 108 ~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (511)
+++||||||||||+|+.+|+++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||||
T Consensus 262 ~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqv 341 (702)
T PLN02905 262 TPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQV 341 (702)
T ss_pred CCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhh
Q 010415 188 VMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEF 267 (511)
Q Consensus 188 VmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~ 267 (511)
|||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|++|
T Consensus 342 VMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 342 VMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred EEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEEEeecccCcccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHcCcccccCCC---------------
Q 010415 268 FVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGP--------------- 332 (511)
Q Consensus 268 ~g~~~I~eI~VGLGPaGELRYPSyp~~~GW~~PGiGEFQCYDky~~~~lr~~a~~~G~~~Wg~gP--------------- 332 (511)
+++++|+||+|||||||||||||||+..||+||||||||||||||+++|+++|+++||++||.||
T Consensus 422 l~~g~I~eI~VGLGPaGELRYPSYp~s~GW~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~gP~dAG~YN~~P~~TgF 501 (702)
T PLN02905 422 FEDGVISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKSLRKAAEARGHLFWARGPDNTGSYNSQPHETGF 501 (702)
T ss_pred hcCCceEEEEeccCCCccccCCCCcCcCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCCCCCCccCCCCCCCCC
Confidence 99889999999999999999999999999999999999999999999999999999999999877
Q ss_pred ------------------------------------CCCCceeeeEeccccccCCCCCCHHHHHhcccCCCCCCChHHHH
Q 010415 333 ------------------------------------AFEGTCISAKLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIA 376 (511)
Q Consensus 333 ------------------------------------~F~~v~l~~Kv~giHWwy~t~sHaAElTAGyYN~~~rDGY~~Ia 376 (511)
+|++++|++|||||||||+++||||||||||||+++||||+||+
T Consensus 502 F~~~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa 581 (702)
T PLN02905 502 FCDGGDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTCIAAKLPGVHWWYKTASHAAELTAGFYNPCNRDGYAAIA 581 (702)
T ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCCchHhhccccccCCCcccHHHHH
Confidence 79999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCcCCCcchHHHHHHhcCCCCCCCC
Q 010415 377 AMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDG 456 (511)
Q Consensus 377 ~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~d~~~y~qI~~~a~~~~~~~~ 456 (511)
+|||||+|+|+|||+||+|++|++.+++++|+||+||+||+++||++||+|+|||||++||.++|+||++|++++++++.
T Consensus 582 ~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~na~~~~~~~~ 661 (702)
T PLN02905 582 SMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILENAKPLNDPDG 661 (702)
T ss_pred HHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhhcccCCcc
Confidence 99999999999999999999987545689999999999999999999999999999999999999999999999888878
Q ss_pred CcceeeEEeeCCccccCCcChhHHHHHHHHhccCCCCC
Q 010415 457 RHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEAVPD 494 (511)
Q Consensus 457 ~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~~ 494 (511)
.++++||||||++.||+++||++|++|||+||+++..+
T Consensus 662 ~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~~~~~ 699 (702)
T PLN02905 662 RHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGEAVLD 699 (702)
T ss_pred CceeeeEEecCchhhcCcchHHHHHHHHHHhccccccc
Confidence 78999999999999999999999999999999986543
No 2
>PLN02705 beta-amylase
Probab=100.00 E-value=3e-169 Score=1336.36 Aligned_cols=415 Identities=58% Similarity=1.070 Sum_probs=404.4
Q ss_pred CCCCCCCCcccccccccccCC-CCCCCCCCCCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeee
Q 010415 77 DDPHGGDSVDAADDMKAVHLP-PKLPERDFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWW 155 (511)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWW 155 (511)
....|++|++|++++|+++++ ++.+|++|+++++||||||||||+|+++|+|+++++|+++|++||++|||||||||||
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWW 291 (681)
T PLN02705 212 TSTSPITSVGCLEADQLIQDVHSGEHENDFTETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWW 291 (681)
T ss_pred cccCccccccccchhhhhhccCCCCCccCcCCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeee
Confidence 456788999999999999987 8899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceee
Q 010415 156 GIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLT 235 (511)
Q Consensus 156 GiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lS 235 (511)
|+||+++|++|||++|++||+|||++|||||||||||||||||||+|+||||+||+++|++|||||||||+|+||+||||
T Consensus 292 GiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLS 371 (681)
T PLN02705 292 GIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLS 371 (681)
T ss_pred eEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCccccccCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeecccCcccCCCCCCCCCCCccCCCcccccccHHHHHH
Q 010415 236 WGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKS 315 (511)
Q Consensus 236 l~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I~eI~VGLGPaGELRYPSyp~~~GW~~PGiGEFQCYDky~~~~ 315 (511)
||+|++|||+||||+|+|+|||+|||++|++|+++++|+||+|||||||||||||||+..||+||||||||||||||+++
T Consensus 372 lg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~ 451 (681)
T PLN02705 372 WSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQN 451 (681)
T ss_pred eecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCccccCCCCcccCCCCCCCcceeeeccHHHHHH
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcccccCCC---------------------------------------------------CCCCceeeeEec
Q 010415 316 LSKAAEARGHLFWARGP---------------------------------------------------AFEGTCISAKLS 344 (511)
Q Consensus 316 lr~~a~~~G~~~Wg~gP---------------------------------------------------~F~~v~l~~Kv~ 344 (511)
|+++|+++||++||.|| +|++++|++|||
T Consensus 452 Lk~aA~a~GhpeWG~gP~dAg~YN~~P~~tgFF~~~G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~~~LsaKVa 531 (681)
T PLN02705 452 LRKAAKSRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEETKIIVKIP 531 (681)
T ss_pred HHHHHHHhCcHhhccCCCCccccCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99999999999999887 799999999999
Q ss_pred cccccCCCCCCHHHHHhcccCCCCCCChHHHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcC
Q 010415 345 GIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVS 424 (511)
Q Consensus 345 giHWwy~t~sHaAElTAGyYN~~~rDGY~~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~G 424 (511)
||||||+++||||||||||||+++||||+||++|||||+|+|+|||+||+++++++ .+++|+||+||+||+++||++|
T Consensus 532 GIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTC~eMe~~d~~~--~~a~s~PE~LV~QV~~aA~~~G 609 (681)
T PLN02705 532 AVYWWYKTASHAAELTAGYYNPTNQDGYSPVFETLKKHSVTVKFVCSGLQMSPNEN--DEALADPEGLSWQVLNSAWDRG 609 (681)
T ss_pred cccccCCCCCchhhhccccccCCCcccHHHHHHHHHHcCceEEEEeccccccCCCC--CccCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999854 6889999999999999999999
Q ss_pred CeeeccccCcCCCcchHHHHHHhcCCCCCCCCCcceeeEEeeCCccccCCcChhHHHHHHHHhccCCCC
Q 010415 425 ILVASENALPCYDREGYNKILENAKPLNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEAVP 493 (511)
Q Consensus 425 v~vaGENAL~~~d~~~y~qI~~~a~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~ 493 (511)
|+|+|||||++||.++|+||++|+++++++++++|++||||||++.||+++||++|++|||+||++++.
T Consensus 610 v~vaGENAL~~~D~~ay~qI~~na~~~~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~ 678 (681)
T PLN02705 610 LTVAGENAITCYDREGCMRLIEIAKPRNHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDIRD 678 (681)
T ss_pred CceeecccccccCHHHHHHHHHHhcccCCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999888888899999999999999999999999999999997753
No 3
>PLN02801 beta-amylase
Probab=100.00 E-value=1.1e-167 Score=1308.32 Aligned_cols=402 Identities=54% Similarity=0.972 Sum_probs=386.7
Q ss_pred CCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 106 AGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 106 ~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
+..++||||||||||+|+++|+|+++++++++|++||++||||||||||||+||+++|++|||++|++||+|||++||||
T Consensus 11 ~~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 90 (517)
T PLN02801 11 MLANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKI 90 (517)
T ss_pred ccCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHh
Q 010415 186 QVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFN 265 (511)
Q Consensus 186 qvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~ 265 (511)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|+
T Consensus 91 q~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 170 (517)
T PLN02801 91 QAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMA 170 (517)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEEEEeecccCcccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHcCcccccCCC-------------
Q 010415 266 EFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGP------------- 332 (511)
Q Consensus 266 ~~~g~~~I~eI~VGLGPaGELRYPSyp~~~GW~~PGiGEFQCYDky~~~~lr~~a~~~G~~~Wg~gP------------- 332 (511)
+|+++++|+||+|||||||||||||||++.||+||||||||||||||+++||++|+++||++||. |
T Consensus 171 ~~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~-P~dag~Yn~~P~~t 249 (517)
T PLN02801 171 DFLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL-PDDAGEYNDTPEDT 249 (517)
T ss_pred HhccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC-CCCCCcccCCCCCC
Confidence 99988899999999999999999999999999999999999999999999999999999999994 4
Q ss_pred --------------------------------------CCCCc--eeeeEeccccccCCCCCCHHHHHhcccCCCCCCCh
Q 010415 333 --------------------------------------AFEGT--CISAKLSGIHWWYKTASHAAELTAGFYNPSNRDGY 372 (511)
Q Consensus 333 --------------------------------------~F~~v--~l~~Kv~giHWwy~t~sHaAElTAGyYN~~~rDGY 372 (511)
+|+++ +|++|||||||||+++||||||||||||+++||||
T Consensus 250 ~FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~~rDGY 329 (517)
T PLN02801 250 GFFKSNGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLKGRDGY 329 (517)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCCCccch
Confidence 78765 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCcCCCcchHHHHHHhcCCCC
Q 010415 373 APIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLN 452 (511)
Q Consensus 373 ~~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~d~~~y~qI~~~a~~~~ 452 (511)
.|||+|||||+|+|+|||+||+|++|++ +++|+||+||+||+++||++||+|+|||||+|||+++|+||++|++++.
T Consensus 330 ~pIa~m~~rh~~~l~FTClEM~D~eq~~---~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~~~ 406 (517)
T PLN02801 330 RPIARMLSRHYGILNFTCLEMRDTEQPA---EALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARPNG 406 (517)
T ss_pred HHHHHHHHHcCCeEEEeecccccCCCCc---ccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999874 8999999999999999999999999999999999999999999998764
Q ss_pred -C---CCCCcceeeEEeeCCccccCCcChhHHHHHHHHhccCCC--CCcccccCCCCcccccCCC
Q 010415 453 -D---PDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEAV--PDLRVYTTEGNKEECSKNQ 511 (511)
Q Consensus 453 -~---~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~--~~~~~~~~~~~~~~~~~~~ 511 (511)
+ ++..++++||||||++.||+++||++|++|||+||+++. .|+++|+|++.|||+||+.
T Consensus 407 ~~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~p~~~~~~~ 471 (517)
T PLN02801 407 VNKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQDYCPDPAKYGHEIVPLERSNPE 471 (517)
T ss_pred CCcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccccCCChhhcCCCCCccccCCCc
Confidence 2 233569999999999999999999999999999999774 4889999999999999984
No 4
>PLN02803 beta-amylase
Probab=100.00 E-value=1.2e-163 Score=1282.56 Aligned_cols=392 Identities=51% Similarity=0.931 Sum_probs=375.2
Q ss_pred CCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 106 AGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 106 ~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
...++||||||||||+|+++|+++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||
T Consensus 81 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 81 KNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred ccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHh
Q 010415 186 QVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFN 265 (511)
Q Consensus 186 qvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~ 265 (511)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|+
T Consensus 161 q~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 240 (548)
T PLN02803 161 QVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK 240 (548)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEEEEeecccCcccCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHHcCcccccC-CC-----------
Q 010415 266 EFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWAR-GP----------- 332 (511)
Q Consensus 266 ~~~g~~~I~eI~VGLGPaGELRYPSyp~~~G-W~~PGiGEFQCYDky~~~~lr~~a~~~G~~~Wg~-gP----------- 332 (511)
+|++ +||+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||. ||
T Consensus 241 ~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~ 319 (548)
T PLN02803 241 DYLG-GVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPE 319 (548)
T ss_pred HHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCC
Confidence 9998 79999999999999999999999988 9999999999999999999999999999999996 56
Q ss_pred ----------------------------------------CCCCc--eeeeEeccccccCCCCCCHHHHHhcccCCCCCC
Q 010415 333 ----------------------------------------AFEGT--CISAKLSGIHWWYKTASHAAELTAGFYNPSNRD 370 (511)
Q Consensus 333 ----------------------------------------~F~~v--~l~~Kv~giHWwy~t~sHaAElTAGyYN~~~rD 370 (511)
+|+++ +|++|||||||||+|+||||||||||||+++||
T Consensus 320 ~t~FF~~~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rd 399 (548)
T PLN02803 320 ETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHD 399 (548)
T ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcc
Confidence 78754 799999999999999999999999999999999
Q ss_pred ChHHHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCcCCCcchHHHHHHhcCC
Q 010415 371 GYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP 450 (511)
Q Consensus 371 GY~~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~d~~~y~qI~~~a~~ 450 (511)
||+||++|||||||+|+|||+||+|++|++ +++|+||+||+||+++||++||+|+|||||++||.++|+||++++++
T Consensus 400 GY~~Ia~mf~rh~~~l~FTClEM~D~eqp~---~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~ 476 (548)
T PLN02803 400 GYLPIARMFSKHGVVLNFTCMEMRDGEQPE---HANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRS 476 (548)
T ss_pred cHHHHHHHHHHcCCeEEEEecCcccCCCCc---cccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhcc
Confidence 999999999999999999999999999764 89999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcceeeEEeeCCccccCCcChhHHHHHHHHhccCCCCCcccccCCCCcccccCC
Q 010415 451 LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEAVPDLRVYTTEGNKEECSKN 510 (511)
Q Consensus 451 ~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~~~~~~~~~~~~~~~~~~ 510 (511)
+.. .++++||||||++.||+++||++|++|||+||++... +++.|++++++
T Consensus 477 ~~~---~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~------~~~~~~~~~~~ 527 (548)
T PLN02803 477 DSG---NGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRN------RRLPECDTEGS 527 (548)
T ss_pred ccc---CceeeeEEecCChHHcChhhHHHHHHHHHHhcCcccc------CccchhhccCc
Confidence 532 3699999999999999999999999999999986652 66677776664
No 5
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=3.9e-163 Score=1281.90 Aligned_cols=386 Identities=49% Similarity=0.892 Sum_probs=370.5
Q ss_pred CCCCCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcC
Q 010415 103 RDFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELE 182 (511)
Q Consensus 103 ~~~~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~G 182 (511)
..-...++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++|
T Consensus 98 ~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~G 177 (573)
T PLN00197 98 GTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHG 177 (573)
T ss_pred cccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcC
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHH
Q 010415 183 LKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRV 262 (511)
Q Consensus 183 LKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~ 262 (511)
||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||+
T Consensus 178 LKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~ 257 (573)
T PLN00197 178 LKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRD 257 (573)
T ss_pred CeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCceEEEEEeecccCcccCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHHcCcccccC-CC--------
Q 010415 263 EFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWAR-GP-------- 332 (511)
Q Consensus 263 ~f~~~~g~~~I~eI~VGLGPaGELRYPSyp~~~G-W~~PGiGEFQCYDky~~~~lr~~a~~~G~~~Wg~-gP-------- 332 (511)
+|++|++ ++|+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||. ||
T Consensus 258 ~F~~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~ 336 (573)
T PLN00197 258 NFKHLLG-DTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYNN 336 (573)
T ss_pred HHHHHhc-CceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccCC
Confidence 9999998 69999999999999999999999988 9999999999999999999999999999999995 66
Q ss_pred --------------------------------------------CCCC--ceeeeEeccccccCCCCCCHHHHHhcccCC
Q 010415 333 --------------------------------------------AFEG--TCISAKLSGIHWWYKTASHAAELTAGFYNP 366 (511)
Q Consensus 333 --------------------------------------------~F~~--v~l~~Kv~giHWwy~t~sHaAElTAGyYN~ 366 (511)
+|++ ++|++|||||||||+++||||||||||||+
T Consensus 337 ~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYNt 416 (573)
T PLN00197 337 WPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYNT 416 (573)
T ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhccccccC
Confidence 7874 689999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCcCCCcchHHHHHH
Q 010415 367 SNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILE 446 (511)
Q Consensus 367 ~~rDGY~~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~d~~~y~qI~~ 446 (511)
++||||+||++|||||||+|+|||+||+|++|+ ++++|+||+||+||+++||++||+|+|||||+|||.++|+||++
T Consensus 417 ~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp---~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~ 493 (573)
T PLN00197 417 RFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQP---QDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQ 493 (573)
T ss_pred CCcccHHHHHHHHHHcCCeEEEEecCcccCCCC---ccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHH
Confidence 999999999999999999999999999999976 48999999999999999999999999999999999999999999
Q ss_pred hcCCCCC--CCCCcceeeEEeeCCccccCCcChhHHHHHHHHhccCCC
Q 010415 447 NAKPLND--PDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEAV 492 (511)
Q Consensus 447 ~a~~~~~--~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~ 492 (511)
+++...+ +..+++++||||||++.||+++||++|++|||+||++..
T Consensus 494 ~~~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~ 541 (573)
T PLN00197 494 ASSLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKD 541 (573)
T ss_pred hcccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCC
Confidence 9876542 344679999999999999999999999999999998765
No 6
>PLN02161 beta-amylase
Probab=100.00 E-value=8.6e-161 Score=1256.15 Aligned_cols=383 Identities=39% Similarity=0.766 Sum_probs=366.0
Q ss_pred CCCCCCCCCccEEEeeccceeeCCC----cccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHH
Q 010415 102 ERDFAGTPYVPVYVMLPLGIIDMNC----ELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQI 177 (511)
Q Consensus 102 ~~~~~~~~~vpvyVMLPLd~V~~~~----~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~m 177 (511)
...-...++||||||||||+|+.++ +++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|
T Consensus 83 ~~~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~m 162 (531)
T PLN02161 83 VLVSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRL 162 (531)
T ss_pred ccccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHH
Confidence 3344566899999999999999764 799999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHH
Q 010415 178 VRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYM 257 (511)
Q Consensus 178 vr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm 257 (511)
||++|||||||||||||||||||+|+||||+||+++|++|||||||||+|+||+||||||+|++|||+||||+|+|+|||
T Consensus 163 vr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm 242 (531)
T PLN02161 163 ISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFM 242 (531)
T ss_pred HHHcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCceEEEEEeecccCcccCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHHcCcccccC-CC---
Q 010415 258 RSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWAR-GP--- 332 (511)
Q Consensus 258 ~SF~~~f~~~~g~~~I~eI~VGLGPaGELRYPSyp~~~G-W~~PGiGEFQCYDky~~~~lr~~a~~~G~~~Wg~-gP--- 332 (511)
+|||++|++|++ ++|+||+|||||||||||||||+.+| |+||||||||||||||+++||++|+++||++||. ||
T Consensus 243 ~SFr~~F~~~~~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dA 321 (531)
T PLN02161 243 LSFSTKFEPYIG-NVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNT 321 (531)
T ss_pred HHHHHHHHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCC
Confidence 999999999997 79999999999999999999999877 9999999999999999999999999999999994 56
Q ss_pred -------------------------------------------------CCC--------CceeeeEeccccccCCCCCC
Q 010415 333 -------------------------------------------------AFE--------GTCISAKLSGIHWWYKTASH 355 (511)
Q Consensus 333 -------------------------------------------------~F~--------~v~l~~Kv~giHWwy~t~sH 355 (511)
+|+ +++|++|||||||||+|+||
T Consensus 322 g~Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SH 401 (531)
T PLN02161 322 GCYNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSH 401 (531)
T ss_pred cccCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCc
Confidence 786 37899999999999999999
Q ss_pred HHHHHhcccCCCCCCChHHHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCcC
Q 010415 356 AAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPC 435 (511)
Q Consensus 356 aAElTAGyYN~~~rDGY~~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~ 435 (511)
||||||||||+++||||.|||+|||||||+|+|||+||+|++|++ ++.|+||+||+||+++||++||+|+|||||+|
T Consensus 402 aAElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~~---~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~ 478 (531)
T PLN02161 402 PAELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPE---KYLCSPEGLRQQIHDVSKKWTIHVTGRNTSER 478 (531)
T ss_pred hhhhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCCc---cccCCHHHHHHHHHHHHHHcCCceeecccccc
Confidence 999999999999999999999999999999999999999999864 89999999999999999999999999999999
Q ss_pred CCcchHHHHHHhcCCCCCCCCCcceeeEEeeCCccccCCcChhHHHHHHHHhccCC
Q 010415 436 YDREGYNKILENAKPLNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEA 491 (511)
Q Consensus 436 ~d~~~y~qI~~~a~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~ 491 (511)
||..+|+||++|++.. ++.++.+||||||++.||+++||++|++|||+||+++
T Consensus 479 ~D~~~~~qi~~n~~~~---~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~~ 531 (531)
T PLN02161 479 FDEMGLRQIRENCVQP---NGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSADM 531 (531)
T ss_pred cChhHHHHHHHHhcCC---CCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCCC
Confidence 9999999999999643 2357999999999999999999999999999999863
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=1e-141 Score=1093.75 Aligned_cols=341 Identities=61% Similarity=1.130 Sum_probs=284.3
Q ss_pred EEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeec
Q 010415 114 YVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (511)
Q Consensus 114 yVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHq 193 (511)
|||||||+|+++++++ +|+++|++||++||||||||||||+||+++|++|||++|++|++|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999887764 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcCceE
Q 010415 194 CGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGII 273 (511)
Q Consensus 194 CGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I 273 (511)
|||||||+|+||||+||++++++| ||+||||+|+||+|||| |||+||| +|+|+|||+|||++|++|+ ++|
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~--~~I 147 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL--STI 147 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH--TGE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 599
Q ss_pred EEEEeecccCcccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHH------HcCcccccC-CC--------------
Q 010415 274 AEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAE------ARGHLFWAR-GP-------------- 332 (511)
Q Consensus 274 ~eI~VGLGPaGELRYPSyp~~~GW~~PGiGEFQCYDky~~~~lr~~a~------~~G~~~Wg~-gP-------------- 332 (511)
+||+|||||||||||||||+.+||+||||||||||||||+++||++|+ +++++.||. ||
T Consensus 148 ~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~y~~~P~~t~fF 227 (402)
T PF01373_consen 148 TEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDAYNSPPEDTGFF 227 (402)
T ss_dssp EEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGGTT-SGGGSTTT
T ss_pred eEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChhhcCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999 557899994 55
Q ss_pred -----------------------------------CCCCc---eeeeEeccccccCC--CCCCHHHHHhcccCCCCCCCh
Q 010415 333 -----------------------------------AFEGT---CISAKLSGIHWWYK--TASHAAELTAGFYNPSNRDGY 372 (511)
Q Consensus 333 -----------------------------------~F~~v---~l~~Kv~giHWwy~--t~sHaAElTAGyYN~~~rDGY 372 (511)
+|+++ +|++|||||||||+ |+|||||||||||| |
T Consensus 228 ~~~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN------Y 301 (402)
T PF01373_consen 228 RDNGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN------Y 301 (402)
T ss_dssp STTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S-------S
T ss_pred ccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC------H
Confidence 67766 89999999999999 88999999999999 9
Q ss_pred HHHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCcCCCcchHHHHHHhcCCCC
Q 010415 373 APIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLN 452 (511)
Q Consensus 373 ~~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~d~~~y~qI~~~a~~~~ 452 (511)
+||++|||||+|+|+|||+||+|+++.+ ..|+||+||+||+++|+++||+|+|||||+|||+++|+||+++++..
T Consensus 302 ~~Ia~mf~kh~~~l~fTClEM~d~~~~p----~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~- 376 (402)
T PF01373_consen 302 SPIARMFKKHGVTLNFTCLEMRDSEEQP----EYSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKGY- 376 (402)
T ss_dssp HHHHHHHHTTT-EEEES-TT--GGSGSC----GGG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTHT-
T ss_pred HHHHHHHHHcCcEEEEEeccccCCCCCC----CCCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhcc-
Confidence 9999999999999999999999994332 36799999999999999999999999999999999999999999864
Q ss_pred CCCCCcceeeEEeeCCccccCCcChhHHHHH
Q 010415 453 DPDGRHLSAFTYLRLSPVLTDGHNFIEFERF 483 (511)
Q Consensus 453 ~~~~~~~~~FTylRm~~~lf~~~n~~~F~~F 483 (511)
++.+||||||++.||+++||.+|++|
T Consensus 377 -----~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 377 -----NYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp -----TTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred -----CCCCeEEEccChHhcCcccHHhccCC
Confidence 35669999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=2.5e-21 Score=196.85 Aligned_cols=200 Identities=21% Similarity=0.402 Sum_probs=147.0
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCCh
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQ 208 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~ 208 (511)
+.+.|+++|+.||++|++.|.+.++ |..+|| .||+|||+++++++++++++|||| ||+ +.+...|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~v--iL~----------~~~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKV--ILG----------TPTAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EE--EEE----------ECTTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeE--EEE----------eccccccc
Confidence 5689999999999999999998665 999999 799999999999999999999998 888 66778999
Q ss_pred hHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeecccCcccCC
Q 010415 209 WVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288 (511)
Q Consensus 209 WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I~eI~VGLGPaGELRY 288 (511)
|+. +++||++.+|++|++...--.... -.-.+.|+++++.|.++++..++
T Consensus 75 Wl~---~~~Pe~~~~~~~g~~~~~g~~~~~--------~~~~p~yr~~~~~~~~~l~~~y~------------------- 124 (374)
T PF02449_consen 75 WLY---DKYPEILPVDADGRRRGFGSRQHY--------CPNSPAYREYARRFIRALAERYG------------------- 124 (374)
T ss_dssp HHH---CCSGCCC-B-TTTSBEECCCSTT---------HCCHHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred chh---hhcccccccCCCCCcCccCCcccc--------chhHHHHHHHHHHHHHHHHhhcc-------------------
Confidence 998 789999999999987431111100 02278999999999999999887
Q ss_pred CCCCCCCCCcc---CCCcccccccHHHHHHHHHHHHHc-----------CcccccCCC-CCCCceeeeEec---cccccC
Q 010415 289 PTYPAKHGWKY---PGIGEFQCYDKYLMKSLSKAAEAR-----------GHLFWARGP-AFEGTCISAKLS---GIHWWY 350 (511)
Q Consensus 289 PSyp~~~GW~~---PGiGEFQCYDky~~~~lr~~a~~~-----------G~~~Wg~gP-~F~~v~l~~Kv~---giHWwy 350 (511)
.+|...||+. ||.+ .||++.+++.|++|+++| |+.||++.+ .|++|++-.+.+ +...++
T Consensus 125 -~~p~vi~~~i~NE~~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~ 201 (374)
T PF02449_consen 125 -DHPAVIGWQIDNEPGYH--RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWL 201 (374)
T ss_dssp -TTTTEEEEEECCSTTCT--S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHH
T ss_pred -ccceEEEEEeccccCcC--cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHH
Confidence 5666666666 4444 899999999999999998 899999876 899887655544 556678
Q ss_pred CCCCCHHHHHhcccCCCCCCChHHHHHHHHHcC
Q 010415 351 KTASHAAELTAGFYNPSNRDGYAPIAAMLKKHG 383 (511)
Q Consensus 351 ~t~sHaAElTAGyYN~~~rDGY~~Ia~mf~kh~ 383 (511)
+...+.++..+.||. -+++.++++.
T Consensus 202 D~~rF~~~~~~~~~~--------~~~~~ir~~~ 226 (374)
T PF02449_consen 202 DWYRFQSDRVAEFFR--------WQADIIREYD 226 (374)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHhC
Confidence 888999999999964 6778888765
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=9e-14 Score=153.23 Aligned_cols=185 Identities=19% Similarity=0.348 Sum_probs=146.2
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHH-HHHHHHcCCcEEEEEeeeccCCCCCCC-ccCC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRL-FQIVRELELKLQVVMSFHECGGNVGDD-VHIP 205 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l-~~mvr~~GLKvqvVmsFHqCGGNVGD~-~~Ip 205 (511)
.+++.|+.+|++||++|++.|++..+ |+.+|| ..|+|||++.+.. ++++.+.||++ ||+ + ++-.
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~v--il~----------t~P~g~ 93 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYV--ILR----------TGPTGA 93 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceE--EEe----------cCCCCC
Confidence 45699999999999999999999555 999999 7899999999999 99999999999 999 5 6778
Q ss_pred CChhHHhhhccCCCeeeecCCCCccc----ceeeeccCccccccCCchhHHHHHHHHHHHHHHhhh-hcCceEEEEEeec
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNS----ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEF-FVDGIIAEIEVGL 280 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~----E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~-~g~~~I~eI~VGL 280 (511)
.|.|+. +++|+|+.+|..|.+.. |.++.. ...|+++.+...+..+++ ++
T Consensus 94 ~P~Wl~---~~~PeiL~~~~~~~~~~~g~r~~~~~~------------~~~Yr~~~~~i~~~irer~~~----------- 147 (673)
T COG1874 94 PPAWLA---KKYPEILAVDENGRVRSDGARENICPV------------SPVYREYLDRILQQIRERLYG----------- 147 (673)
T ss_pred CchHHh---cCChhheEecCCCcccCCCcccccccc------------cHHHHHHHHHHHHHHHHHHhc-----------
Confidence 999999 89999999999988765 555554 347999999988888888 65
Q ss_pred ccCcccCCCCCCCCCCCc----cCCCcccccccHHHHHHHHHHHHHc-----------CcccccCCC-CCCCceeee-Ee
Q 010415 281 GPCGELRYPTYPAKHGWK----YPGIGEFQCYDKYLMKSLSKAAEAR-----------GHLFWARGP-AFEGTCISA-KL 343 (511)
Q Consensus 281 GPaGELRYPSyp~~~GW~----~PGiGEFQCYDky~~~~lr~~a~~~-----------G~~~Wg~gP-~F~~v~l~~-Kv 343 (511)
.+|...+|+ |.|. -||++++++.|+.|++++ ++.||++.+ +|+.+.... +.
T Consensus 148 ---------~~~~v~~w~~dneY~~~---~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~ 215 (673)
T COG1874 148 ---------NGPAVITWQNDNEYGGH---PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFG 215 (673)
T ss_pred ---------cCCceeEEEccCccCCc---cccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCcc
Confidence 334444444 3444 599999999999999887 688999875 787764322 11
Q ss_pred c-ccccc-CCCCCCHHHHHhccc
Q 010415 344 S-GIHWW-YKTASHAAELTAGFY 364 (511)
Q Consensus 344 ~-giHWw-y~t~sHaAElTAGyY 364 (511)
. +.|=. ++.+.+..|.+..|.
T Consensus 216 e~~~~~~~ld~~~f~~e~~~~~~ 238 (673)
T COG1874 216 ELPLPGLYLDYRRFESEQILEFV 238 (673)
T ss_pred ccCCccchhhHhhhhhhhhHHHH
Confidence 1 22223 466777778777663
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.76 E-value=2.9e-08 Score=101.16 Aligned_cols=119 Identities=18% Similarity=0.389 Sum_probs=75.2
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchh---HHHHHHHHHHcCCcEEEEEee--eccCCCCCCCcc
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSG---YRRLFQIVRELELKLQVVMSF--HECGGNVGDDVH 203 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~---Y~~l~~mvr~~GLKvqvVmsF--HqCGGNVGD~~~ 203 (511)
..++.|+..|++||++|++.|.+-|.|...|+ .||+|||++ .++++++|+++||+| |+.+ -.|+ ...+
T Consensus 21 ~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~a----E~~~ 93 (319)
T PF01301_consen 21 IPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICA----EWDN 93 (319)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---T----TBGG
T ss_pred CChhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEE--Eecccceecc----cccc
Confidence 35899999999999999999999999999998 799999997 679999999999998 6654 2333 1111
Q ss_pred CCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc--CceEEEEEe
Q 010415 204 IPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV--DGIIAEIEV 278 (511)
Q Consensus 204 IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g--~~~I~eI~V 278 (511)
=-||.||. ++|++.+.+.+ .+ -++.-+.|++.+...+++++- .|.|.-|||
T Consensus 94 gG~P~Wl~----~~~~~~~R~~~----~~----------------~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv 146 (319)
T PF01301_consen 94 GGLPAWLL----RKPDIRLRTND----PP----------------FLEAVERWYRALAKIIKPLQYTNGGPIIMVQV 146 (319)
T ss_dssp GG--GGGG----GSTTS-SSSS-----HH----------------HHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE
T ss_pred hhhhhhhh----ccccccccccc----hh----------------HHHHHHHHHHHHHHHHHhhhhcCCCceehhhh
Confidence 23999998 33444332111 11 144455566666666666552 268888988
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=98.25 E-value=6e-06 Score=93.94 Aligned_cols=146 Identities=21% Similarity=0.352 Sum_probs=103.3
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHH---HHHHHHHHcCCcEEEEEeeeccCC-CCCCCccC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYR---RLFQIVRELELKLQVVMSFHECGG-NVGDDVHI 204 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~---~l~~mvr~~GLKvqvVmsFHqCGG-NVGD~~~I 204 (511)
..++.|+.-|++||++|++.|.+=|+|..-|+ .||+|||++=+ +.+++|++.||.|.+=.+=.-|+- +-|
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~G----- 129 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFG----- 129 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCC-----
Confidence 46899999999999999999999999999999 79999999855 557899999999944333333431 111
Q ss_pred CCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc--------CceEEEE
Q 010415 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV--------DGIIAEI 276 (511)
Q Consensus 205 pLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g--------~~~I~eI 276 (511)
-||.|+. ++|+|.+ ||--+.|.+.|+.|-+++.+.+. .|-|..+
T Consensus 130 GlP~WL~----~~~~i~~------------------------Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImv 181 (840)
T PLN03059 130 GFPVWLK----YVPGIEF------------------------RTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILS 181 (840)
T ss_pred CCchhhh----cCCCccc------------------------ccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEE
Confidence 3999997 4566544 34456788888888887777662 2567777
Q ss_pred EeecccCcccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHcC
Q 010415 277 EVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARG 324 (511)
Q Consensus 277 ~VGLGPaGELRYPSyp~~~GW~~PGiGEFQCYDky~~~~lr~~a~~~G 324 (511)
|| |=-|=||. |.| ---|+.-++.|++.|++.|
T Consensus 182 QI------ENEYGs~~----~~~------~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 182 QI------ENEYGPVE----WEI------GAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred Ee------ccccccee----ccc------CcchHHHHHHHHHHHHHcC
Confidence 77 33343432 111 1225666677888888775
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=97.77 E-value=9.8e-05 Score=78.31 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpL 206 (511)
....++.+|+.||++|++.+++.+=|..+||.+++++| +..|+++++.++++||++.|.|. | -.+
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H-----------fd~ 119 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H-----------WDL 119 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------CCc
Confidence 47899999999999999999999999999998788888 79999999999999999966665 3 359
Q ss_pred ChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc-CceEEEEEe
Q 010415 207 PQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEV 278 (511)
Q Consensus 207 P~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g-~~~I~eI~V 278 (511)
|.|+.+. .|-.+.+ -++.|.+|.+...++|.+... =.||.|..+
T Consensus 120 P~~l~~~------------gGw~~~~----------------~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 120 PQALEDR------------GGWLNRD----------------TAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred cHHHHhc------------CCCCChH----------------HHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 9998632 2333222 267788888888888876422 025666654
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.47 E-value=0.00087 Score=63.95 Aligned_cols=126 Identities=11% Similarity=0.203 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeee-cCCCc---eecchhHHHHHHHHHHcCCcEEEEEeeec----cCCCCCCCcc
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVE-AHTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHE----CGGNVGDDVH 203 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE-~~~p~---~YdWs~Y~~l~~mvr~~GLKvqvVmsFHq----CGGNVGD~~~ 203 (511)
...+++++.||++|++-|++.+.|...+ +..+. .--|..++++++.++++||+| |+.+|. |.++-+....
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~~~~w~~~~~~~~~~ 98 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHNAPGWANGGDGYGNN 98 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEESTTCSSSTSTTTTH
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEeccCccccccccccccc
Confidence 4889999999999999999999995554 43333 345788999999999999999 999998 3333333333
Q ss_pred CCCChhHHh----hhccCCCeeeecCCCCcccceeeeccCccccccCCc------hhHHHHHHHHHHHHHHhhhhc
Q 010415 204 IPLPQWVME----IGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRT------AVEVYFDYMRSFRVEFNEFFV 269 (511)
Q Consensus 204 IpLP~WV~e----~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRT------pi~~Y~dfm~SF~~~f~~~~g 269 (511)
.....|+.+ ..+. |++.. --+.|-+=++|...+.. +.+.|.++++...++....-.
T Consensus 99 ~~~~~~~~~~~~~la~~-----y~~~~-----~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~ 164 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKR-----YKDNP-----PVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADP 164 (281)
T ss_dssp HHHHHHHHHHHHHHHHH-----HTTTT-----TTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHhhhhhhccc-----cCCCC-----cEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCC
Confidence 334445433 1211 11111 13344444777776543 458899999999999988654
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.44 E-value=0.0033 Score=61.85 Aligned_cols=220 Identities=15% Similarity=0.244 Sum_probs=118.4
Q ss_pred eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCccccee
Q 010415 155 WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECL 234 (511)
Q Consensus 155 WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~l 234 (511)
|+.+|+ .+|+|||+..+++++.++++|++++.-..+..+ ..|.|+.+..
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~~~~-------------------- 51 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVFNLS-------------------- 51 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhhcCC--------------------
Confidence 899998 799999999999999999999999653333321 3789986211
Q ss_pred eeccCccccccCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeecccCcccCCCCCCCCCCCccCCCcccccccHHHHH
Q 010415 235 TWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMK 314 (511)
Q Consensus 235 Sl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I~eI~VGLGPaGELRYPSyp~~~GW~~PGiGEFQCYDky~~~ 314 (511)
-+.-.+.++.|.++...+|+ +.|..++|.=-|-..= -+.+.. .-| ++..| .+|+..
T Consensus 52 ---------------~~~~~~~~~~~i~~v~~ry~-g~i~~wdV~NE~~~~~-~~~~~~-~~w-~~~~G-----~~~i~~ 107 (254)
T smart00633 52 ---------------KETLLARLENHIKTVVGRYK-GKIYAWDVVNEALHDN-GSGLRR-SVW-YQILG-----EDYIEK 107 (254)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhC-CcceEEEEeeecccCC-Cccccc-chH-HHhcC-----hHHHHH
Confidence 11123444455555555555 4577777775555320 000100 012 12334 367888
Q ss_pred HHHHHHHHcCcccccCCCCCCCceeeeEeccccccCCCCCCHHHHHhcccCCCCCCChHHHHHHHHHcCcEEEEeecccc
Q 010415 315 SLSKAAEARGHLFWARGPAFEGTCISAKLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELR 394 (511)
Q Consensus 315 ~lr~~a~~~G~~~Wg~gP~F~~v~l~~Kv~giHWwy~t~sHaAElTAGyYN~~~rDGY~~Ia~mf~kh~~~l~FTClEM~ 394 (511)
.|+.+.+.. .+++|-. + =|+..+ ....++.|..+++-+.+.|+.+.--.+++.
T Consensus 108 af~~ar~~~-----------P~a~l~~-----N-dy~~~~----------~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H 160 (254)
T smart00633 108 AFRYAREAD-----------PDAKLFY-----N-DYNTEE----------PNAKRQAIYELVKKLKAKGVPIDGIGLQSH 160 (254)
T ss_pred HHHHHHHhC-----------CCCEEEE-----e-ccCCcC----------ccHHHHHHHHHHHHHHHCCCccceeeeeee
Confidence 887655431 1122111 0 011100 002345788899999999887544444333
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeee-ccccCcCCCc-----chHHHHHHhcCCCCCCCCCcceeeEEeeCC
Q 010415 395 TVDQHEDFPEALADPEGLVWQVLNAAWDVSILVA-SENALPCYDR-----EGYNKILENAKPLNDPDGRHLSAFTYLRLS 468 (511)
Q Consensus 395 d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~va-GENAL~~~d~-----~~y~qI~~~a~~~~~~~~~~~~~FTylRm~ 468 (511)
... ...+|+. +.+.++.-.+.|++|. -|-.....+. +-|.+++..++.. ....++|+=-+.
T Consensus 161 ~~~-------~~~~~~~-~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~-----p~v~gi~~Wg~~ 227 (254)
T smart00633 161 LSL-------GSPNIAE-IRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAH-----PAVTGVTVWGVT 227 (254)
T ss_pred ecC-------CCCCHHH-HHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcC-----CCeeEEEEeCCc
Confidence 211 1124555 4555555556687764 2222222111 2366666665532 246777776555
Q ss_pred c
Q 010415 469 P 469 (511)
Q Consensus 469 ~ 469 (511)
+
T Consensus 228 d 228 (254)
T smart00633 228 D 228 (254)
T ss_pred c
Confidence 4
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.39 E-value=0.00051 Score=73.13 Aligned_cols=99 Identities=20% Similarity=0.329 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-Cceec---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-PQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~-p~~Yd---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
....++.||+.||++|++..++.+=|..++|.+ .++.| +..|+++++-++++|++..|.|. | -.
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H-----------~~ 123 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H-----------FD 123 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------S-
T ss_pred chhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------cc
Confidence 378899999999999999999999999999987 78888 99999999999999999976665 3 36
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhh
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFF 268 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~ 268 (511)
||.|+.+.| |-.| |.-++.|.+|.+-..++|.++.
T Consensus 124 ~P~~l~~~g------------gw~~----------------~~~~~~F~~Ya~~~~~~~gd~V 158 (455)
T PF00232_consen 124 LPLWLEDYG------------GWLN----------------RETVDWFARYAEFVFERFGDRV 158 (455)
T ss_dssp -BHHHHHHT------------GGGS----------------THHHHHHHHHHHHHHHHHTTTB
T ss_pred cccceeecc------------cccC----------------HHHHHHHHHHHHHHHHHhCCCc
Confidence 999998543 2222 2336778888888888888754
No 16
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0026 Score=71.17 Aligned_cols=141 Identities=21% Similarity=0.414 Sum_probs=90.6
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHH---HHHHHcCCcEEEEEe---eeccCCCCCCCc
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLF---QIVRELELKLQVVMS---FHECGGNVGDDV 202 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~---~mvr~~GLKvqvVms---FHqCGGNVGD~~ 202 (511)
..++.|..-|+++|++|.+.|.+-|+|..-|+ .||+||||+=..|+ .+|++.||=| +|- |=+--.|-|
T Consensus 46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv--~LRiGPyIcaEw~~G--- 119 (649)
T KOG0496|consen 46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYV--ILRIGPYICAEWNFG--- 119 (649)
T ss_pred CChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEE--EecCCCeEEecccCC---
Confidence 35899999999999999999999999999998 89999999977665 5677888877 554 111223333
Q ss_pred cCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccc----cccCC-------chhHHHHHHHHHHHHHHhhhhcCc
Q 010415 203 HIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKER----VLRGR-------TAVEVYFDYMRSFRVEFNEFFVDG 271 (511)
Q Consensus 203 ~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~p----vl~GR-------Tpi~~Y~dfm~SF~~~f~~~~g~~ 271 (511)
-||.|+ +.-|.|.|...+.....|-=.|.-=-+| ++..+ ---..|..+-+.+++....+++..
T Consensus 120 --G~P~wL----~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~ 193 (649)
T KOG0496|consen 120 --GLPWWL----RNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWA 193 (649)
T ss_pred --Ccchhh----hhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccc
Confidence 289666 4678888865444333222222211222 11100 011356777777777777777755
Q ss_pred eEEEEEeecc
Q 010415 272 IIAEIEVGLG 281 (511)
Q Consensus 272 ~I~eI~VGLG 281 (511)
.+..+..+.|
T Consensus 194 a~m~~~l~~g 203 (649)
T KOG0496|consen 194 AVLATSLGTG 203 (649)
T ss_pred eEEEEecCCC
Confidence 5555444444
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.93 E-value=0.0035 Score=67.92 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC----CceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHT----PQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~----p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
....++.+++.||++|++...+.+=|..++|.+ +++-.++.|+++++-++++|++..|.|.-| .
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~------------~ 136 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF------------D 136 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC------------C
Confidence 478899999999999999999999999999965 478889999999999999999998888744 5
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~-~~I~eI~V 278 (511)
||.|+.+. + .|-.| |.-++.|.+|.+-..++|.+...- -||.|..+
T Consensus 137 ~P~~l~~~---~--------GGW~~----------------~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 137 VPMHLVTE---Y--------GSWRN----------------RKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred CCHHHHHh---c--------CCCCC----------------HHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 99998631 0 12111 334677888888888888775431 25667653
No 18
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.81 E-value=0.019 Score=58.86 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=94.6
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeee-ee------eecCC------Cce-ecchhHHHHHHHHHHcCCcEEEEEeeec
Q 010415 128 LVDPEILVNQLKILKSINVDGVMVDCWW-GI------VEAHT------PQV-YNWSGYRRLFQIVRELELKLQVVMSFHE 193 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdvWW-Gi------VE~~~------p~~-YdWs~Y~~l~~mvr~~GLKvqvVmsFHq 193 (511)
+..++++++-|+.|+++|++.|-++||+ |. +|+.+ +++ -.|..+..+++.+++.||+|++=|-|--
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 3368999999999999999999999995 33 33322 111 1377899999999999999999884332
Q ss_pred cCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcCceE
Q 010415 194 CGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGII 273 (511)
Q Consensus 194 CGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I 273 (511)
-..+.+. ..-.-|.|+. .++|+...+...+.-+.-+|..+ .+.=++|+.+...++...+. |
T Consensus 95 ~~~~~~~-~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~lnP~------------~PeVr~~i~~~v~Eiv~~Yd---v 155 (311)
T PF02638_consen 95 NAPDVSH-ILKKHPEWFA---VNHPGWVRTYEDANGGYYWLNPG------------HPEVRDYIIDIVKEIVKNYD---V 155 (311)
T ss_pred CCCchhh-hhhcCchhhe---ecCCCceeecccCCCCceEECCC------------CHHHHHHHHHHHHHHHhcCC---C
Confidence 2222221 1123577876 56677666665555444577777 78899999999999988885 7
Q ss_pred EEEEee
Q 010415 274 AEIEVG 279 (511)
Q Consensus 274 ~eI~VG 279 (511)
..|.+=
T Consensus 156 DGIhlD 161 (311)
T PF02638_consen 156 DGIHLD 161 (311)
T ss_pred CeEEec
Confidence 777754
No 19
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.65 E-value=0.0069 Score=65.67 Aligned_cols=111 Identities=12% Similarity=0.183 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC----CceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHT----PQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~----p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
....++.|++.||++|++...+.+=|..++|.+ +++-.+..|+++++.++++|++..|-|. .-.
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~------------H~d 134 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS------------HFE 134 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee------------CCC
Confidence 367899999999999999999999999999965 4667799999999999999999966665 236
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc-CceEEEEEee
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEVG 279 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g-~~~I~eI~VG 279 (511)
||.|+.+. + .|-.| |.-++.|.+|.+-..++|.+... =-||.|..+-
T Consensus 135 lP~~L~~~---y--------GGW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 135 MPLHLVQQ---Y--------GSWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred CCHHHHHh---c--------CCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 99999732 0 12222 23367788888888888877432 0267787653
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.45 E-value=0.01 Score=63.96 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=82.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee---cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY---NWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y---dWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
.....++.|++.||++|++.-++.+=|..|+|.+++.. -+..|++|++-++++|++-.|.|- .-.
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~------------H~d 118 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH------------HFD 118 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec------------CCC
Confidence 34789999999999999999999999999999876544 578899999999999999966665 346
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc-CceEEEEEe
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEV 278 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g-~~~I~eI~V 278 (511)
||.|+.+ +.|-.|.| -++.|.+|.+-..++|.+ .. =-||.|..+
T Consensus 119 lP~~L~~------------~GGW~n~~----------------~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 119 TPEALHS------------NGDWLNRE----------------NIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred CcHHHHH------------cCCCCCHH----------------HHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 9999973 23443333 266677777777777766 43 124556543
No 21
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.28 E-value=0.017 Score=62.49 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=82.1
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee---cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY---NWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y---dWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
.....++.|++.||++|++.-.+.+=|..++|.+++++ -...|+++++-++++|++-.|.|- .-.
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~------------H~d 117 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH------------HFD 117 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc------------CCC
Confidence 34789999999999999999999999999999887766 477899999999999999866555 346
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc-CceEEEEEe
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEV 278 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g-~~~I~eI~V 278 (511)
||.|+.+ +.|-.|. .-++.|.+|.+--.++|.+ .. =-||.|..+
T Consensus 118 lP~~L~~------------~GGW~n~----------------~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 118 TPEALHS------------NGDFLNR----------------ENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred CcHHHHH------------cCCCCCH----------------HHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 9999973 2343333 3366677777766666665 32 125666553
No 22
>PLN02814 beta-glucosidase
Probab=96.24 E-value=0.018 Score=63.07 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc---hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW---SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW---s~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpL 206 (511)
....++.|++.||++|++.-.+.+=|..|+|+++++.|- ..|+++++-++++|++-.|-|. .-.|
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~------------H~dl 142 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY------------HYDL 142 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec------------CCCC
Confidence 478999999999999999999999999999988777775 6799999999999999966665 3469
Q ss_pred ChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 010415 207 PQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (511)
Q Consensus 207 P~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~-~~I~eI~V 278 (511)
|.|+.+. + .|-.| |.-++.|.+|.+--.++|.+...- -||.|..+
T Consensus 143 P~~L~~~---y--------GGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 143 PQSLEDE---Y--------GGWIN----------------RKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred CHHHHHh---c--------CCcCC----------------hhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 9999742 0 12222 333777888888888888875431 14556653
No 23
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.20 E-value=0.071 Score=48.86 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=73.8
Q ss_pred HHHHHHHHcCcceEEEeee--eee------eecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCC
Q 010415 136 NQLKILKSINVDGVMVDCW--WGI------VEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLP 207 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvW--WGi------VE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP 207 (511)
+-++.||++||+.|++.+= ||. +-+..|+- .-+-+.++++.+++.|++|.+=++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 4467889999999999442 221 21222332 46889999999999999998888865 33
Q ss_pred hhHHhhhccCCCeeeecCCCCc--ccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc
Q 010415 208 QWVMEIGQNNPEIYFTDREGRR--NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (511)
Q Consensus 208 ~WV~e~g~~~PDI~ftDr~G~r--n~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g 269 (511)
.|+. +++||=+..|++|+. ..+....+.-..++ -.-|+||+..-.+++-+.+.
T Consensus 70 ~~~~---~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~------ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 70 EDAA---ERHPEWFVRDADGRPMRGERFGYPGWYTCCL------NSPYREFLLEQIREILDRYD 124 (132)
T ss_pred hHHH---HhCCceeeECCCCCCcCCCCcCCCCceecCC------CccHHHHHHHHHHHHHHcCC
Confidence 4444 899999999999982 22222211101111 12488999888888876554
No 24
>PLN02849 beta-glucosidase
Probab=96.17 E-value=0.021 Score=62.41 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpL 206 (511)
....++.|++.||++|++.-.+.+=|..|+|.+.++.| ...|+++++-++++|++-.|-|. .-.|
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~------------H~dl 144 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF------------HYDH 144 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec------------CCCC
Confidence 47899999999999999999999999999998766555 66899999999999999966665 3469
Q ss_pred ChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 010415 207 PQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (511)
Q Consensus 207 P~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~-~~I~eI~V 278 (511)
|.|+.+. + .|-.| |.-++.|.+|.+--.++|.+...- -||.|..+
T Consensus 145 P~~L~~~---y--------GGW~n----------------r~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 145 PQYLEDD---Y--------GGWIN----------------RRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred cHHHHHh---c--------CCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 9999742 0 23332 334778888888888888875431 15667654
No 25
>PLN02998 beta-glucosidase
Probab=96.13 E-value=0.021 Score=62.40 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpL 206 (511)
....++.|++.||++|++.-++.+=|..|+|.+.+.+| ...|+++++-++++|++-.|-|. .-.|
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~------------H~dl 147 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH------------HFDL 147 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec------------CCCC
Confidence 47899999999999999999999999999998777664 67899999999999999966665 3469
Q ss_pred ChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 010415 207 PQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (511)
Q Consensus 207 P~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~-~~I~eI~V 278 (511)
|.|+.+. + .|-. .|.-++.|.+|.+--.++|.+...- -||.|..+
T Consensus 148 P~~L~~~---y--------GGW~----------------n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 148 PQALEDE---Y--------GGWL----------------SQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CHHHHHh---h--------CCcC----------------CchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 9999742 0 1222 2334788888888888888875431 14556653
No 26
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.91 E-value=0.027 Score=61.08 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=83.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCC----ceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTP----QVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p----~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
....++.|++.||++|++.-++.+=|..|+|.+. ++=-...|++|++-++++|++-.|-|. | -.
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H-----------~d 132 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H-----------FE 132 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------CC
Confidence 4789999999999999999999999999999752 334478899999999999999966664 3 46
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~-~~I~eI~V 278 (511)
||.|+.+. + .|-.| |.-++.|.+|.+--.++|.+...- -||.|..+
T Consensus 133 lP~~L~~~---y--------GGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 133 MPYHLVTE---Y--------GGWRN----------------RKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred CCHHHHHh---c--------CCcCC----------------hHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 99999632 0 22222 333677888888888888875430 25777654
No 27
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.86 E-value=0.032 Score=60.61 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=83.0
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-C---ceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-P---QVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~-p---~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~I 204 (511)
.....++.|++.||++|++.-.+.+=|..|+|.+ + ++=-...|++|++-++++|++-.|-|- | -
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H-----------~ 137 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H-----------F 137 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------c
Confidence 3478999999999999999999999999999975 3 334478999999999999999966665 3 4
Q ss_pred CCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 010415 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (511)
Q Consensus 205 pLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~-~~I~eI~V 278 (511)
.||.|+.+. + .|-.| |.-++.|.+|.+--.++|.+...- -||.|..+
T Consensus 138 dlP~~L~~~---~--------GGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 138 DCPMHLIEE---Y--------GGWRN----------------RKMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred CCCHHHHhh---c--------CCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 699999731 0 22222 233677888888777777775431 15667654
No 28
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.98 E-value=0.3 Score=53.39 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=98.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCc-eec---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQ-VYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~-~Yd---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
-....+.+++.||++|++..++.+=|..+-|.+.+ ..| -.-|++||+-+.+.|++..|-|+ .-.
T Consensus 57 ~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~------------Hfd 124 (460)
T COG2723 57 FYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY------------HFD 124 (460)
T ss_pred hhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec------------ccC
Confidence 36789999999999999999999999999996655 455 56699999999999999977776 457
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEeecccCc
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEVGLGPCG 284 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~-~~I~eI~VGLGPaG 284 (511)
+|.|+.+.. .|-.| |.-++.|..|.+--.++|.+...- -|.-|+.|=+.
T Consensus 125 ~P~~L~~~y-----------gGW~n----------------R~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~--- 174 (460)
T COG2723 125 LPLWLQKPY-----------GGWEN----------------RETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVE--- 174 (460)
T ss_pred CcHHHhhcc-----------CCccC----------------HHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhc---
Confidence 999998432 23333 444777777777777777765431 14555555433
Q ss_pred ccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHH
Q 010415 285 ELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAE 321 (511)
Q Consensus 285 ELRYPSyp~~~GW~~PGiGEFQCYDky~~~~lr~~a~ 321 (511)
++-..|-.+|+...++-.=+.+--.+-++|+
T Consensus 175 ------~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~ 205 (460)
T COG2723 175 ------LGYLYGGHPPGIVDPKAAYQVAHHMLLAHAL 205 (460)
T ss_pred ------ccccccccCCCccCHHHHHHHHHHHHHHHHH
Confidence 2222234457776655443444444444444
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=93.90 E-value=0.14 Score=52.68 Aligned_cols=134 Identities=22% Similarity=0.455 Sum_probs=83.9
Q ss_pred HHHHHHHcCcceEEEe-ee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEE-EEeeeccCCCCCCCccCCCChhHHhh
Q 010415 137 QLKILKSINVDGVMVD-CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV-VMSFHECGGNVGDDVHIPLPQWVMEI 213 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vd-vW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv-VmsFHqCGGNVGD~~~IpLP~WV~e~ 213 (511)
..+.+-....+.|+.. .. |+.+|+ .+|+|||+.-+++++.+++.|++++- .|..|. -.|.|+.+.
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~-----------~~P~w~~~~ 93 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVWHS-----------QTPDWVFNL 93 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESS-----------SS-HHHHTS
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEEcc-----------cccceeeec
Confidence 4555656677777765 23 999998 78999999999999999999999972 344453 479999843
Q ss_pred hccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe---ecccCc---cc
Q 010415 214 GQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV---GLGPCG---EL 286 (511)
Q Consensus 214 g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~-~~I~eI~V---GLGPaG---EL 286 (511)
...+|+ --+..++.|+.+.+++..++++ |.|....| -+...| .|
T Consensus 94 ~~~~~~-----------------------------~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~ 144 (320)
T PF00331_consen 94 ANGSPD-----------------------------EKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGL 144 (320)
T ss_dssp TTSSBH-----------------------------HHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSB
T ss_pred cCCCcc-----------------------------cHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccc
Confidence 111110 0346888888888888888875 56766655 233332 22
Q ss_pred CCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHc
Q 010415 287 RYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEAR 323 (511)
Q Consensus 287 RYPSyp~~~GW~~PGiGEFQCYDky~~~~lr~~a~~~ 323 (511)
|- ..| |--+| +.|....|+.+-+..
T Consensus 145 r~------~~~-~~~lG-----~~yi~~aF~~A~~~~ 169 (320)
T PF00331_consen 145 RD------SPW-YDALG-----PDYIADAFRAAREAD 169 (320)
T ss_dssp CT------SHH-HHHHT-----TCHHHHHHHHHHHHH
T ss_pred cC------Chh-hhccc-----HhHHHHHHHHHHHhC
Confidence 22 111 12223 667777887776654
No 30
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=93.55 E-value=0.62 Score=46.71 Aligned_cols=117 Identities=16% Similarity=0.409 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhH
Q 010415 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV 210 (511)
+...++++.++|+++|.++.-|+--.--+|..|. +-+++++++-+++.|.++ .+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~----~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV----IHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce----EEEECC-Cch-----hHHHHH
Confidence 3455667778899999999988743322455555 999999999999998765 569996 433 445556
Q ss_pred HhhhccCCCeeeecCCCC-----c---ccceeeeccCccccccCCchhHHHHHHHHHHHHHH
Q 010415 211 MEIGQNNPEIYFTDREGR-----R---NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEF 264 (511)
Q Consensus 211 ~e~g~~~PDI~ftDr~G~-----r---n~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f 264 (511)
.+.+ .|++-.|..-. + .+-+|..++|..-+|..-||-++. +..+...+.+
T Consensus 240 ~~~~---~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~-~~v~~~l~~~ 297 (330)
T cd03465 240 ADLG---ADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIK-EEVKELLEKL 297 (330)
T ss_pred HHhC---CCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHH-HHHHHHHHHH
Confidence 5433 56766664411 0 124666778776345445664443 3333333333
No 31
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=91.86 E-value=0.75 Score=49.83 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHH-HcCcceEEEeeeeeee-------ec-CCCc--eecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010415 131 PEILVNQLKILK-SINVDGVMVDCWWGIV-------EA-HTPQ--VYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (511)
Q Consensus 131 ~~~~~~~L~~LK-~~GVdGV~vdvWWGiV-------E~-~~p~--~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVG 199 (511)
...++.+|+.++ ++|+.-|.+ ||+. .. .+++ .|||+..+++++.+.+.|||.-+-|+|
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f-------- 106 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF-------- 106 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S--------
T ss_pred hHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe--------
Confidence 468899999997 689999975 3333 11 1233 399999999999999999999999995
Q ss_pred CCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcC
Q 010415 200 DDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD 270 (511)
Q Consensus 200 D~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~ 270 (511)
-|.++. +.+.-.|. .+..++.- .-.+.+.|++++|..++.++||.
T Consensus 107 ------~p~~~~----~~~~~~~~------~~~~~~pp----------~~~~~W~~lv~~~~~h~~~RYG~ 151 (486)
T PF01229_consen 107 ------MPMALA----SGYQTVFW------YKGNISPP----------KDYEKWRDLVRAFARHYIDRYGI 151 (486)
T ss_dssp ------B-GGGB----SS--EETT------TTEE-S-B----------S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhhhc----CCCCcccc------ccCCcCCc----------ccHHHHHHHHHHHHHHHHhhcCC
Confidence 455553 11111111 11122211 12688999999999999999983
No 32
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=91.18 E-value=0.73 Score=43.65 Aligned_cols=58 Identities=12% Similarity=0.293 Sum_probs=44.2
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC--Ccee-cc-------hhHHHHHHHHHHcCCcEEEEEe
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT--PQVY-NW-------SGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~--p~~Y-dW-------s~Y~~l~~mvr~~GLKvqvVms 190 (511)
-++++|++.|+.||++|+|.|.+- |.-.+... |-++ ++ +....+++.|.+.|+|| .|+
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv--~~G 84 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV--FVG 84 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEE--EEe
Confidence 468999999999999999999876 55555422 2222 11 36889999999999999 555
No 33
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=91.08 E-value=1.7 Score=43.50 Aligned_cols=123 Identities=17% Similarity=0.237 Sum_probs=73.9
Q ss_pred CCCccc-ChHHHHHHHHHHHHcC-cceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 010415 124 MNCELV-DPEILVNQLKILKSIN-VDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDD 201 (511)
Q Consensus 124 ~~~~~~-~~~~~~~~L~~LK~~G-VdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~ 201 (511)
.+|+.. +.+...+-|+.+-.+| +|.|.|+..++ =...+++.+.+++.|.|| |+|+|.=.
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~-----------~~~~~~l~~~~~~~~~kv--I~S~H~f~------ 146 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG-----------KDVVKEMVAFAHEHGVKV--VLSYHDFE------ 146 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC-----------hHHHHHHHHHHHHcCCEE--EEeeCCCC------
Confidence 345443 3444445567777778 99999987553 134678889999999998 99999422
Q ss_pred ccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCcccc-ccCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeec
Q 010415 202 VHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGL 280 (511)
Q Consensus 202 ~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pv-l~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I~eI~VGL 280 (511)
-+++.|-+. + .-.+..++++|-..+ ..-+++.++.+=+ .|..++..... .+-=|.++|
T Consensus 147 --~tP~~~~l~--~-------------~~~~~~~~gaDivKia~~a~~~~D~~~ll--~~~~~~~~~~~--~~P~i~~~M 205 (253)
T PRK02412 147 --KTPPKEEIV--E-------------RLRKMESLGADIVKIAVMPQSEQDVLTLL--NATREMKELYA--DQPLITMSM 205 (253)
T ss_pred --CCcCHHHHH--H-------------HHHHHHHhCCCEEEEEecCCCHHHHHHHH--HHHHHHHhcCC--CCCEEEEeC
Confidence 234444321 0 012445667776665 3445666655432 44444443211 244578999
Q ss_pred ccCccc
Q 010415 281 GPCGEL 286 (511)
Q Consensus 281 GPaGEL 286 (511)
|+-|-+
T Consensus 206 G~~G~~ 211 (253)
T PRK02412 206 GKLGRI 211 (253)
T ss_pred CCCchH
Confidence 998854
No 34
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=90.94 E-value=0.4 Score=50.37 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeec
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHq 193 (511)
+.-|+.||+.||+-|++-|| |.|...|..|...=.++++-|+++|||| .|-||-
T Consensus 27 ~d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~v--lldfHY 80 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKV--LLDFHY 80 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EE--EEEE-S
T ss_pred CCHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeE--EEeecc
Confidence 34678899999999999998 6664458888888888999999999999 999995
No 35
>PRK10785 maltodextrin glucosidase; Provisional
Probab=90.14 E-value=6.2 Score=44.20 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec-------------chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGG 196 (511)
|-+.+.+.|..||++||++|-+.=- .|..+--.|+ ...+++|++.|.+.|+||..=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pi---f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPI---FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCc---ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 5699999999999999999988642 3433333343 35789999999999999977777766662
Q ss_pred CCCCCccCCCChhHHhhhc-----------cCCCeeeecCCCCcccceeee-ccCccccccCCchhHHHHHHHHHHHH-H
Q 010415 197 NVGDDVHIPLPQWVMEIGQ-----------NNPEIYFTDREGRRNSECLTW-GIDKERVLRGRTAVEVYFDYMRSFRV-E 263 (511)
Q Consensus 197 NVGD~~~IpLP~WV~e~g~-----------~~PDI~ftDr~G~rn~E~lSl-~~D~~pvl~GRTpi~~Y~dfm~SF~~-~ 263 (511)
+ -.|+..... .+.|-|.-+..|. +.+| +++.+|-|.=. .+..+++|..=.+ -
T Consensus 254 ----~-----~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~~~w~g~~~lPdLN~~--np~v~~~l~~~~~~v 318 (598)
T PRK10785 254 ----S-----HPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----ALDWLGYASLPKLDFQ--SEEVVNEIYRGEDSI 318 (598)
T ss_pred ----C-----CHHHHHhhccccccccCCCCCcceeeEECCCCC----cCCcCCCCcCccccCC--CHHHHHHHHhhhhHH
Confidence 1 137654321 1123444344442 3454 45677777633 4466777653111 2
Q ss_pred HhhhhcCceEEEEEeecccCcccCCCCCCCCCCCccC---CCc--ccccccHHHHHHHHHHHHHc
Q 010415 264 FNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYP---GIG--EFQCYDKYLMKSLSKAAEAR 323 (511)
Q Consensus 264 f~~~~g~~~I~eI~VGLGPaGELRYPSyp~~~GW~~P---GiG--EFQCYDky~~~~lr~~a~~~ 323 (511)
+.-.+.. --..+|||+= -++ ...+-+....+.|++.+++.
T Consensus 319 ~~~Wl~~--------------------~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 319 VRHWLKA--------------------PYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred HHHhhcC--------------------CCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhh
Confidence 2222220 0025789882 222 22333455677888888765
No 36
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=89.87 E-value=0.87 Score=46.31 Aligned_cols=73 Identities=8% Similarity=0.187 Sum_probs=54.0
Q ss_pred CccEEEeeccc---eeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEE
Q 010415 110 YVPVYVMLPLG---IIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 110 ~vpvyVMLPLd---~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
.+||+||+=-- .+-++ ..-+.+.++++.+|++|+|||.+.+- ..+++.|...-++|++.+. |+++-
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~---~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~vT 119 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSD---GEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLAVT 119 (248)
T ss_pred CCCeEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCceE
Confidence 49999998432 21111 13588999999999999999998764 3579999999999999994 77773
Q ss_pred EEEeeec
Q 010415 187 VVMSFHE 193 (511)
Q Consensus 187 vVmsFHq 193 (511)
-=++|-.
T Consensus 120 FHRAfD~ 126 (248)
T PRK11572 120 FHRAFDM 126 (248)
T ss_pred Eechhhc
Confidence 3334433
No 37
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=89.08 E-value=0.58 Score=48.06 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=69.5
Q ss_pred CCCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCc
Q 010415 105 FAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELK 184 (511)
Q Consensus 105 ~~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLK 184 (511)
++...+|.|.+-.--..-.+...+. +++++-|+.+++.||.||.||-+ .+++|+-=.+|+++++.|.+++|-
T Consensus 81 Ya~~KgVgi~lw~~~~~~~~~~~~~--~~~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lm 152 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETGGNVANLE--KQLDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLM 152 (273)
T ss_dssp HHHHTT-EEEEEEECCHTTBHHHHH--CCHHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHcCCCEEEEEeCCcchhhHhHH--HHHHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcE
Confidence 4566788887765544411111122 33699999999999999999987 358999999999999999999985
Q ss_pred EEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeec
Q 010415 185 LQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWG 237 (511)
Q Consensus 185 vqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~ 237 (511)
| -||.|= .|.=+. +.+|.+ ..++|.|-.|+-.|.
T Consensus 153 v----nfHg~~----------kPtG~~---RTyPN~--mT~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 153 V----NFHGAT----------KPTGLR---RTYPNL--MTREGVRGQEYNKWS 186 (273)
T ss_dssp E----EETTS-------------TTHH---HCSTTE--EEE--S--GGGGGTT
T ss_pred E----EecCCc----------CCCccc---ccCccH--HHHHHhhhhhhcccc
Confidence 5 899764 554233 699987 468899999995454
No 38
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=88.32 E-value=0.81 Score=45.42 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeec--CCCc---eecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCC
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVEA--HTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE~--~~p~---~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpL 206 (511)
+.+.+.++++.++|+++|.++.=|+-... -+|. +|-|.+|+++++.+++.|.++ + .|-||+. -++
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~--~--lH~cg~~------~~~ 213 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI--V--HHSCYDA------ADL 213 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce--E--EEECCCH------HHH
Confidence 44566677888999999999987665431 1344 445899999999888877665 3 4999963 122
Q ss_pred ChhHHhhhccCCCeeeecCCC-Cc--------ccceeeeccCccccccCCchhHHHHHHHHHHHHHH
Q 010415 207 PQWVMEIGQNNPEIYFTDREG-RR--------NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEF 264 (511)
Q Consensus 207 P~WV~e~g~~~PDI~ftDr~G-~r--------n~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f 264 (511)
=.++. +...|++--|..- .- .+-+|.-++|.. +...|+ +.=.+..++..+.+
T Consensus 214 ~~~l~---~~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~--~~~~~~-e~i~~~v~~~l~~~ 274 (306)
T cd00465 214 LEEMI---QLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPG--YLPATD-EECIAKVEELVERL 274 (306)
T ss_pred HHHHH---HhCcceEecccccCCHHHHHHHhCCCEEEECCCCcc--ccCCCH-HHHHHHHHHHHHHh
Confidence 23343 3334554444331 00 113566677765 334566 43444444444444
No 39
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=88.08 E-value=0.88 Score=44.79 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=48.1
Q ss_pred CCCccEEEeecc---ceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCc
Q 010415 108 TPYVPVYVMLPL---GIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELK 184 (511)
Q Consensus 108 ~~~vpvyVMLPL---d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLK 184 (511)
...+||+||+=- |.+-++ ..-+.+..+++.+|++|+|||.+.+ +- .++..|...-++|.+.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 457999999853 222111 1358899999999999999999865 33 478999999999999987 777
Q ss_pred EEEEEeeec
Q 010415 185 LQVVMSFHE 193 (511)
Q Consensus 185 vqvVmsFHq 193 (511)
+ .||-
T Consensus 117 ~----tFHR 121 (201)
T PF03932_consen 117 V----TFHR 121 (201)
T ss_dssp E----EE-G
T ss_pred E----EEeC
Confidence 7 4564
No 40
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=87.63 E-value=1.4 Score=47.10 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
..+.|+++++..|++||||..+++. .+..+.+.-...+++.|++.|+|| .+||---+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKl--f~SfD~~~ 71 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKL--FFSFDMNS 71 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEE--EEEecccC
Confidence 5789999999999999999999996 345577899999999999999999 88876533
No 41
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=87.42 E-value=7.8 Score=37.63 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=81.3
Q ss_pred CCCccc-ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCc
Q 010415 124 MNCELV-DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDV 202 (511)
Q Consensus 124 ~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~ 202 (511)
.+|++. +.+...+-|+.+-.+|+|.|.|+..+ +-.+++++.+++.|-|| |+|+|.-.+ ++
T Consensus 67 eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~ki--I~S~H~f~~----tp 127 (225)
T cd00502 67 EGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKI--IGSYHDFSG----TP 127 (225)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEE--EEEeccCCC----Cc
Confidence 344443 34444455677777889999988654 34777888888889998 999995442 22
Q ss_pred cCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCcccc-ccCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeecc
Q 010415 203 HIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLG 281 (511)
Q Consensus 203 ~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pv-l~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I~eI~VGLG 281 (511)
+.+.|..-. .+.-.+++|-..+ ..-+++.+..+= + .|..++.... .+.-|.++||
T Consensus 128 --~~~~l~~~~-----------------~~~~~~gadivKla~~~~~~~D~~~l-l-~~~~~~~~~~---~~p~i~~~MG 183 (225)
T cd00502 128 --SDEELVSRL-----------------EKMAALGADIVKIAVMANSIEDNLRL-L-KFTRQVKNLY---DIPLIAINMG 183 (225)
T ss_pred --CHHHHHHHH-----------------HHHHHhCCCEEEEEecCCCHHHHHHH-H-HHHHHHHhcC---CCCEEEEEcC
Confidence 333443211 1222345555544 233344444332 2 4445554332 2456789999
Q ss_pred cCcccCCCCCCC-CCCCccCCCcccccccHHHHHHHHH
Q 010415 282 PCGELRYPTYPA-KHGWKYPGIGEFQCYDKYLMKSLSK 318 (511)
Q Consensus 282 PaGELRYPSyp~-~~GW~~PGiGEFQCYDky~~~~lr~ 318 (511)
+-|.+-==-.|. ..-+.|..+|+-..-.+.-.+.+++
T Consensus 184 ~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~ 221 (225)
T cd00502 184 ELGKLSRILSPVFGSPLTYASLPEPSAPGQLSVEELKQ 221 (225)
T ss_pred CCCchhhccccccCCcccccCCCCCCCCCCcCHHHHHH
Confidence 999642111111 1115555555444444444444444
No 42
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=87.30 E-value=6.9 Score=37.84 Aligned_cols=130 Identities=18% Similarity=0.279 Sum_probs=78.1
Q ss_pred ccEEEeeccceeeCCCccc-ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEE
Q 010415 111 VPVYVMLPLGIIDMNCELV-DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 111 vpvyVMLPLd~V~~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVm 189 (511)
+|+-+++ -....+|... +.+.-.+-|+.+-.+|++.|.|+.+ .+.-.......+++.+-|| |+
T Consensus 55 ~piI~T~--R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~i--I~ 118 (224)
T PF01487_consen 55 LPIIFTV--RTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKI--IL 118 (224)
T ss_dssp SEEEEE----BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEE--EE
T ss_pred CCEEEEe--cccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeE--EE
Confidence 4544433 3334455553 3566666777777788998888654 1344444477888899999 99
Q ss_pred eeeccCCCCCCCccCCCChh--HHhhhccCCCeeeecCCCCcccceeeeccCcccc-ccCCchhHHHHHHHHHHHHHHhh
Q 010415 190 SFHECGGNVGDDVHIPLPQW--VMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNE 266 (511)
Q Consensus 190 sFHqCGGNVGD~~~IpLP~W--V~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pv-l~GRTpi~~Y~dfm~SF~~~f~~ 266 (511)
|+|-..+ -|.| +.+. -.+...+++|-..+ ..-+++.+..+ +..|..++..
T Consensus 119 S~H~f~~---------tp~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~ 171 (224)
T PF01487_consen 119 SYHDFEK---------TPSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFRE 171 (224)
T ss_dssp EEEESS------------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHH
T ss_pred EeccCCC---------CCCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhh
Confidence 9994442 2333 2211 12334566666555 45667777766 6667777776
Q ss_pred hhcCceEEEEEeecccCccc
Q 010415 267 FFVDGIIAEIEVGLGPCGEL 286 (511)
Q Consensus 267 ~~g~~~I~eI~VGLGPaGEL 286 (511)
.. .+.-|-++||+.|.+
T Consensus 172 ~~---~~p~i~~~MG~~G~~ 188 (224)
T PF01487_consen 172 EP---DIPVIAISMGELGRI 188 (224)
T ss_dssp HT---SSEEEEEEETGGGHH
T ss_pred cc---CCcEEEEEcCCCchh
Confidence 52 377899999999964
No 43
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.82 E-value=7.2 Score=43.70 Aligned_cols=147 Identities=18% Similarity=0.334 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHcCcceEEE-eee-e-eeeecCCCceec-------------------------chhHHHHHHHHHHcC
Q 010415 131 PEILVNQLKILKSINVDGVMV-DCW-W-GIVEAHTPQVYN-------------------------WSGYRRLFQIVRELE 182 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~v-dvW-W-GiVE~~~p~~Yd-------------------------Ws~Y~~l~~mvr~~G 182 (511)
...+...|..||++||+.|.+ +|+ . +.-|..+...|+ ...++++++.+.+.|
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~G 242 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENG 242 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCC
Confidence 346667899999999999976 332 1 111111111122 356999999999999
Q ss_pred CcEEEEEee-eccCCCCCCCccCCCChhHHhhhccCCCeeee-cCCCCcccceeeeccCccccccCCchhHHHHHHHHHH
Q 010415 183 LKLQVVMSF-HECGGNVGDDVHIPLPQWVMEIGQNNPEIYFT-DREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSF 260 (511)
Q Consensus 183 LKvqvVmsF-HqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ft-Dr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF 260 (511)
|+|..=+-| |-|++. +. + +. ...|+-+|. |..|.... +-.++.| + .+--+..++|+..-
T Consensus 243 i~VilDvV~NH~~~~~--~~---~----f~---~~~~~~~~~~~~~g~~~~-~~g~~~~----~--~~~~~~v~~~i~~~ 303 (605)
T TIGR02104 243 IRVIMDVVYNHTYSRE--ES---P----FE---KTVPGYYYRYNEDGTLSN-GTGVGND----T--ASEREMMRKFIVDS 303 (605)
T ss_pred CEEEEEEEcCCccCCC--CC---c----cc---CCCCCeeEEECCCCCccC-CCcccCC----c--ccCCHHHHHHHHHH
Confidence 999777777 554321 11 1 11 123444443 44443211 1011211 1 12245667777665
Q ss_pred HHHHhhhhcCceEEEEEeecccCcccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHc
Q 010415 261 RVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEAR 323 (511)
Q Consensus 261 ~~~f~~~~g~~~I~eI~VGLGPaGELRYPSyp~~~GW~~PGiGEFQCYDky~~~~lr~~a~~~ 323 (511)
.....+.++ .+|||+=-++ ..+.-.++.|++++++.
T Consensus 304 ~~~W~~e~~------------------------iDGfR~D~~~---~~~~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 304 VLYWVKEYN------------------------IDGFRFDLMG---IHDIETMNEIRKALNKI 339 (605)
T ss_pred HHHHHHHcC------------------------CCEEEEechh---cCCHHHHHHHHHHHHhh
Confidence 555554444 4789884332 33455667777777664
No 44
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=85.77 E-value=7.6 Score=38.00 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=72.1
Q ss_pred CCCccc-ChHHHHHHHHHH-HHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 010415 124 MNCELV-DPEILVNQLKIL-KSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDD 201 (511)
Q Consensus 124 ~~~~~~-~~~~~~~~L~~L-K~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~ 201 (511)
.+|... +.+...+-|+.+ ...|+|.|.|+.+|.. ...+++++.+++.|-|| |+|+|.=.+ |
T Consensus 69 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I~S~H~f~~----t 131 (228)
T TIGR01093 69 EGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKI--IMSYHDFQK----T 131 (228)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEE--EEeccCCCC----C
Confidence 344443 334444445555 7789999999987741 24778888889999888 999994321 1
Q ss_pred ccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCcccc-ccCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeec
Q 010415 202 VHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGL 280 (511)
Q Consensus 202 ~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pv-l~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I~eI~VGL 280 (511)
-+.+.|+. .- .+..++|+|-+.+ ..-+++.++.+= .+|..++.... .+-=|.++|
T Consensus 132 --p~~~~l~~-~~----------------~~~~~~gaDivKia~~a~~~~D~~~l--l~~~~~~~~~~---~~p~i~~~M 187 (228)
T TIGR01093 132 --PSWEEIVE-RL----------------EKALSYGADIVKIAVMANSKEDVLTL--LEITNKVDEHA---DVPLITMSM 187 (228)
T ss_pred --CCHHHHHH-HH----------------HHHHHhCCCEEEEEeccCCHHHHHHH--HHHHHHHHhcC---CCCEEEEeC
Confidence 12223322 11 2334566776655 234555444332 25555555431 245578999
Q ss_pred ccCccc
Q 010415 281 GPCGEL 286 (511)
Q Consensus 281 GPaGEL 286 (511)
|+.|-+
T Consensus 188 G~~G~~ 193 (228)
T TIGR01093 188 GDRGKI 193 (228)
T ss_pred CCCChh
Confidence 999965
No 45
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.43 E-value=2.3 Score=40.62 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecC-CCcee-------------cchhHHHHHHHHHHcCCcEEEEEee-ecc
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAH-TPQVY-------------NWSGYRRLFQIVRELELKLQVVMSF-HEC 194 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~-~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvVmsF-HqC 194 (511)
|.+.+.+.|..||++||++|.+. .+.|.. +..-| .+..+++|++.|.+.|+||..=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~---Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLS---PIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEES---S-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceecc---cccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 45789999999999999999885 233321 11111 3567899999999999999554444 665
Q ss_pred CCC
Q 010415 195 GGN 197 (511)
Q Consensus 195 GGN 197 (511)
..+
T Consensus 79 ~~~ 81 (316)
T PF00128_consen 79 DDH 81 (316)
T ss_dssp TTS
T ss_pred ccc
Confidence 543
No 46
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=84.34 E-value=1.7 Score=44.37 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc---eecchhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~---~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGG 196 (511)
...++++.++|+|+|.+..-|+--.--+|. +|-+.+++++++-+++.|... + .|-||.
T Consensus 183 ~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~--i--lH~CG~ 243 (340)
T TIGR01463 183 IAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT--V--LHICGF 243 (340)
T ss_pred HHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce--E--EEECCC
Confidence 455567789999999888778632222455 444999999999999887432 3 599973
No 47
>PHA00442 host recBCD nuclease inhibitor
Probab=83.97 E-value=1.8 Score=35.21 Aligned_cols=27 Identities=41% Similarity=0.710 Sum_probs=22.4
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHc
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL 181 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~ 181 (511)
.-|.+|++.||| ||+||.+..+|+.+.
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 457788888887 899999999998653
No 48
>PRK01060 endonuclease IV; Provisional
Probab=83.34 E-value=2.1 Score=41.91 Aligned_cols=63 Identities=8% Similarity=-0.079 Sum_probs=42.3
Q ss_pred eeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 116 MLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 116 MLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
|+++++.++ -.+.++..|+.++++|+++|++.+....- ..+..++=...+++-+++++.||++
T Consensus 1 ~~~~g~~~~-----~~~~~~~~l~~~~~~G~d~vEl~~~~p~~--~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 1 MKLIGAHVS-----AAGGLEGAVAEAAEIGANAFMIFTGNPQQ--WKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCeEEEeee-----cCCCHHHHHHHHHHcCCCEEEEECCCCCC--CcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 567777652 22349999999999999999996531100 0112233334677888999999996
No 49
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.10 E-value=7.6 Score=39.37 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=65.5
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
..+|+.+|.=...|- .-.+++=++.+|++||+||-++ . .-+...+++++.++++||++.+.
T Consensus 88 ~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviip--------D----Lp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIP--------D----LPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEEC--------C----CCHHHHHHHHHHHHHcCCcEEEE
Confidence 457888888766543 2367778999999999999996 1 12467889999999999999655
Q ss_pred EeeeccCCCCCCCccCCCChhHHhhhccCCC-eeeecCCCCc
Q 010415 189 MSFHECGGNVGDDVHIPLPQWVMEIGQNNPE-IYFTDREGRR 229 (511)
Q Consensus 189 msFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ftDr~G~r 229 (511)
++ ++. .+..+..+.+..++ |++..+.|..
T Consensus 149 va-----------p~t-~~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 149 VA-----------PTT-TDERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred eC-----------CCC-CHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 54 332 46788877777777 5555776643
No 50
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=81.56 E-value=2.4 Score=44.65 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=52.4
Q ss_pred ccEEEeeccceeeC-----CCc----ccChHHHHH-----------HHHHHHHcCcce-EEEeee--e-eeeecCCCcee
Q 010415 111 VPVYVMLPLGIIDM-----NCE----LVDPEILVN-----------QLKILKSINVDG-VMVDCW--W-GIVEAHTPQVY 166 (511)
Q Consensus 111 vpvyVMLPLd~V~~-----~~~----~~~~~~~~~-----------~L~~LK~~GVdG-V~vdvW--W-GiVE~~~p~~Y 166 (511)
+-..+..|++++.. .+- ..+++.+.+ -+++..++|++| |.+..+ | +++- |.+|
T Consensus 173 i~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~ls---p~~f 249 (378)
T cd03308 173 AGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLR---PKQF 249 (378)
T ss_pred cceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccC---HHHH
Confidence 44588899985541 011 124544443 445566789998 777776 4 3444 5666
Q ss_pred c---chhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 167 N---WSGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 167 d---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
+ |-+++++++-+++.|.++ |+ |-||
T Consensus 250 ~ef~~P~~k~i~~~i~~~g~~~--il--h~cG 277 (378)
T cd03308 250 EKFYWPSFKKVVEGLAARGQRI--FL--FFEG 277 (378)
T ss_pred HHHHHHHHHHHHHHHHhcCCCE--EE--EcCC
Confidence 6 999999999999988765 54 9998
No 51
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=79.26 E-value=8.6 Score=39.22 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChh
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~W 209 (511)
.+++.+.+++|.++|++.|.+|.= |+.+=...+......+.+++.+.+.+.+...++ ..|-|.||...+-...-+-|
T Consensus 154 a~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~ 231 (332)
T cd03311 154 ALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYE 231 (332)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHH
Confidence 567788899999999999999985 765543223345666777788877765655543 56999999754322223334
Q ss_pred -HHhh-hccCCCeeeecCCCC
Q 010415 210 -VMEI-GQNNPEIYFTDREGR 228 (511)
Q Consensus 210 -V~e~-g~~~PDI~ftDr~G~ 228 (511)
+.+. .+..-|.++-|-...
T Consensus 232 ~i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 232 PIAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred HHHHHHHhCCCCEEEEEEcCC
Confidence 2222 245578777776554
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=78.40 E-value=9.1 Score=36.06 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=48.3
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeec-CCCcee-------------cchhHHHHHHHHHHcCCcEEEEEeeecc
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEA-HTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHEC 194 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~-~~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvVmsFHqC 194 (511)
-+.+.+.+.|..||++||++|-+.-.+-..+. ....-| +.+.++++++.++++|+||..=+-+--|
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 46789999999999999999977654322220 001111 3467899999999999999766666666
Q ss_pred CC
Q 010415 195 GG 196 (511)
Q Consensus 195 GG 196 (511)
+.
T Consensus 96 ~~ 97 (166)
T smart00642 96 SD 97 (166)
T ss_pred CC
Confidence 64
No 53
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=78.15 E-value=11 Score=36.64 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEE
Q 010415 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
-++..|+.++++|.+||++. + | ++. ...++.++++++||++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~--~-------~--~~~-~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYL--F-------P--YDW-DAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEec--C-------C--ccC-CHHHHHHHHHHcCCeEE
Confidence 58899999999999999883 2 1 122 25778889999999984
No 54
>PLN02361 alpha-amylase
Probab=77.32 E-value=7.8 Score=41.80 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc-------------hhHHHHHHHHHHcCCcEEEEEee-eccCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW-------------SGYRRLFQIVRELELKLQVVMSF-HECGG 196 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW-------------s~Y~~l~~mvr~~GLKvqvVmsF-HqCGG 196 (511)
++.+.+.|..||++||++|-+.--. |..++.-|+- +.+++|++.+++.|+||.+=+-+ |-||.
T Consensus 28 w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~ 104 (401)
T PLN02361 28 WRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGT 104 (401)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccCC
Confidence 6899999999999999999886532 3223333332 46899999999999999654444 77775
Q ss_pred CC
Q 010415 197 NV 198 (511)
Q Consensus 197 NV 198 (511)
.-
T Consensus 105 ~~ 106 (401)
T PLN02361 105 TQ 106 (401)
T ss_pred CC
Confidence 43
No 55
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=76.88 E-value=13 Score=39.98 Aligned_cols=79 Identities=18% Similarity=0.369 Sum_probs=50.2
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeee-----------eeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWW-----------GIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN 197 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWW-----------GiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGN 197 (511)
.+++.+.+.++++|++|++-+.||-=| |.-++ .+.+|= +|.+.|++-|++.|||.=.=+..=.+ |
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v--~ 130 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMV--S 130 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EEEEEEETTEE--E
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeEEEEeccccc--c
Confidence 478999999999999999999998766 33443 234442 58999999999999998433321111 2
Q ss_pred CCCCccCCCChhHH
Q 010415 198 VGDDVHIPLPQWVM 211 (511)
Q Consensus 198 VGD~~~IpLP~WV~ 211 (511)
.+-...-.-|.|+.
T Consensus 131 ~~S~l~~~hPdw~l 144 (394)
T PF02065_consen 131 PDSDLYREHPDWVL 144 (394)
T ss_dssp SSSCHCCSSBGGBT
T ss_pred chhHHHHhCcccee
Confidence 22233334677776
No 56
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.06 E-value=5.7 Score=38.99 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=45.8
Q ss_pred eccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchh--HHHHHHHHHHcCCcEEEE
Q 010415 117 LPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSG--YRRLFQIVRELELKLQVV 188 (511)
Q Consensus 117 LPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~--Y~~l~~mvr~~GLKvqvV 188 (511)
+||++... .+...-.|+..++.++++|.++|++.+. .. .....++|+. .+++-++++++||+|..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVDESD----ERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecCccc----cchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 46665531 2333457899999999999999999643 10 0123456654 678899999999999654
No 57
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=74.92 E-value=7.4 Score=38.65 Aligned_cols=54 Identities=13% Similarity=-0.045 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeee---eecCCCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 135 VNQLKILKSINVDGVMVDCWWGI---VEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGi---VE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
+..|+.||++|++.|.++.= +. .+.-. +..+|..+.+.++.++++|+++.+-+-
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i 179 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGI 179 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEE
Confidence 56788999999999988733 21 11111 246889999999999999998754443
No 58
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=74.79 E-value=2.9 Score=37.93 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=35.6
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEE
Q 010415 138 LKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (511)
Q Consensus 138 L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (511)
|+.++++|+++|.+..++..-... + -...+++.++++++||++..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~----~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K----DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H----HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c----hHHHHHHHHHHHHcCCeEEE
Confidence 688999999999999886644321 0 45788999999999999733
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=73.76 E-value=6.6 Score=38.75 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecch--hHHHHHHHHHHcCCcEEEE
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS--GYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs--~Y~~l~~mvr~~GLKvqvV 188 (511)
.-.|+..|+.++++|+++|++.++.. + ..+..++|+ .-.++.++++++||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET--D-DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc--c-chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 46799999999999999999965431 1 123444554 4667888999999999544
No 60
>PRK10150 beta-D-glucuronidase; Provisional
Probab=73.43 E-value=72 Score=35.62 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.6
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEE
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVm 189 (511)
.+.+++.++|+.||++|++.|++- .. | .=.++.++|-+.||-|..=+
T Consensus 310 ~~~~~~~~d~~l~K~~G~N~vR~s---h~-----p------~~~~~~~~cD~~GllV~~E~ 356 (604)
T PRK10150 310 LDEVLNVHDHNLMKWIGANSFRTS---HY-----P------YSEEMLDLADRHGIVVIDET 356 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEec---cC-----C------CCHHHHHHHHhcCcEEEEec
Confidence 567889999999999999999982 11 1 11478999999999886433
No 61
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.20 E-value=17 Score=37.21 Aligned_cols=83 Identities=10% Similarity=0.197 Sum_probs=56.3
Q ss_pred cChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceec-----chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 010415 129 VDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYN-----WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDD 201 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~G--VdGV~vdvWWGiVE~~~p~~Yd-----Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~ 201 (511)
.+.+.+.+-++.+++.| +|.|.+|.-|-. .-+.|. |-.-+++++-+++.|+|+ ++..+-
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~--~l~i~P-------- 92 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRV--TLWVHP-------- 92 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeE--EEEECC--------
Confidence 56889999999999998 689999986532 123333 345788888899999998 444432
Q ss_pred ccCCCChhHHhhhccCCCeeeecCCC
Q 010415 202 VHIPLPQWVMEIGQNNPEIYFTDREG 227 (511)
Q Consensus 202 ~~IpLP~WV~e~g~~~PDI~ftDr~G 227 (511)
.|..-.=+-+++ ...+.++++.+|
T Consensus 93 -~i~~~s~~~~e~-~~~g~~vk~~~g 116 (303)
T cd06592 93 -FINTDSENFREA-VEKGYLVSEPSG 116 (303)
T ss_pred -eeCCCCHHHHhh-hhCCeEEECCCC
Confidence 222222233334 345789999888
No 62
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=73.05 E-value=22 Score=38.01 Aligned_cols=109 Identities=15% Similarity=0.234 Sum_probs=72.3
Q ss_pred ChHHH-----HHHHHHHHHcCcceEEEeee-eeeeecC---CCcee----cchhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010415 130 DPEIL-----VNQLKILKSINVDGVMVDCW-WGIVEAH---TPQVY----NWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (511)
Q Consensus 130 ~~~~~-----~~~L~~LK~~GVdGV~vdvW-WGiVE~~---~p~~Y----dWs~Y~~l~~mvr~~GLKvqvVmsFHqCGG 196 (511)
..+.| +..+..+|++|++-|++++- |.+ +.- .|... .| ..+++++-|++.||+| +|..|.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V--~iD~H~~~~ 141 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYV--LIDLHGYPG 141 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHH-HHHHHHHHHHhcCeeE--EEEecccCC
Confidence 45555 89999999999999999987 554 542 23222 24 8889999999999999 999996542
Q ss_pred C-CCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcCceEEE
Q 010415 197 N-VGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAE 275 (511)
Q Consensus 197 N-VGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I~e 275 (511)
. .+++ ..-+++..+. .-+-++.|.+.-+..+.+|.+ . .++..
T Consensus 142 ~~~~~~-----------------~s~~~~~~~~-----------------~~~~~~~~~~~w~~ia~~f~~-~--~~VIg 184 (407)
T COG2730 142 GNNGHE-----------------HSGYTSDYKE-----------------ENENVEATIDIWKFIANRFKN-Y--DTVIG 184 (407)
T ss_pred CCCCcC-----------------cccccccccc-----------------cchhHHHHHHHHHHHHHhccC-C--Cceee
Confidence 2 2221 1111222222 123478888888888888888 2 35555
Q ss_pred EEee
Q 010415 276 IEVG 279 (511)
Q Consensus 276 I~VG 279 (511)
|++=
T Consensus 185 ~~~~ 188 (407)
T COG2730 185 FELI 188 (407)
T ss_pred eeee
Confidence 5543
No 63
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=72.60 E-value=20 Score=36.30 Aligned_cols=88 Identities=13% Similarity=0.268 Sum_probs=60.5
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010415 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~G--VdGV~vdvWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD 200 (511)
..+.+.+.+-++.+|++| +|.+.+|.=|. ...+-+.|+|+ --+++++-+++.|+|+ ++..|-. |+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~--~~~~~P~---i~~ 92 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKV--CLWINPY---IAQ 92 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeE--EEEecCC---CCC
Confidence 357889999999999999 88999997443 22111255555 6889999999999998 6665532 221
Q ss_pred CccCCCChhHHhhhccCCCeeeecCCCCc
Q 010415 201 DVHIPLPQWVMEIGQNNPEIYFTDREGRR 229 (511)
Q Consensus 201 ~~~IpLP~WV~e~g~~~PDI~ftDr~G~r 229 (511)
+ -| +-+++ +.++.|+++.+|..
T Consensus 93 ~----~~--~~~e~-~~~g~~v~~~~g~~ 114 (308)
T cd06593 93 K----SP--LFKEA-AEKGYLVKKPDGSV 114 (308)
T ss_pred C----ch--hHHHH-HHCCeEEECCCCCe
Confidence 1 12 33444 35688999988764
No 64
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=71.82 E-value=2.6 Score=44.82 Aligned_cols=184 Identities=17% Similarity=0.268 Sum_probs=101.1
Q ss_pred eEEEeee---eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCc-cCCCChhHHhhhccCCCeeee
Q 010415 148 GVMVDCW---WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDV-HIPLPQWVMEIGQNNPEIYFT 223 (511)
Q Consensus 148 GV~vdvW---WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~-~IpLP~WV~e~g~~~PDI~ft 223 (511)
.+-+++| |..+|+ .+|+|+|..=+++++.||++||++ -||- -+ .-..|.|+. .
T Consensus 59 n~iTpenemKwe~i~p-~~G~f~Fe~AD~ia~FAr~h~m~l----hGHt-------LvW~~q~P~W~~-----------~ 115 (345)
T COG3693 59 NQITPENEMKWEAIEP-ERGRFNFEAADAIANFARKHNMPL----HGHT-------LVWHSQVPDWLF-----------G 115 (345)
T ss_pred cccccccccccccccC-CCCccCccchHHHHHHHHHcCCee----ccce-------eeecccCCchhh-----------c
Confidence 4567777 999999 899999999999999999999976 4551 11 235788886 1
Q ss_pred cCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc-CceEEEEEeecccCcccCCCCCCCCCCCccCCC
Q 010415 224 DREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGI 302 (511)
Q Consensus 224 Dr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g-~~~I~eI~VGLGPaGELRYPSyp~~~GW~~PGi 302 (511)
|+ + .|.--.++++++...-...|....- =+||.|+- --.| ++.++ -|-.-|.
T Consensus 116 ~e----------~--------~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~v-dd~g-------~~R~s-~w~~~~~ 168 (345)
T COG3693 116 DE----------L--------SKEALAKMVEEHIKTVVGRYKGSVASWDVVNEAV-DDQG-------SLRRS-AWYDGGT 168 (345)
T ss_pred cc----------c--------ChHHHHHHHHHHHHHHHHhccCceeEEEeccccc-CCCc-------hhhhh-hhhccCC
Confidence 11 1 1112256666665555444444211 02333332 1121 33332 3655455
Q ss_pred cccccccHHHHHHHHHHHHHcCcc-----cccC-C-C----CCCC-c----eeeeEeccccccCCCCCCHHHHHhcccCC
Q 010415 303 GEFQCYDKYLMKSLSKAAEARGHL-----FWAR-G-P----AFEG-T----CISAKLSGIHWWYKTASHAAELTAGFYNP 366 (511)
Q Consensus 303 GEFQCYDky~~~~lr~~a~~~G~~-----~Wg~-g-P----~F~~-v----~l~~Kv~giHWwy~t~sHaAElTAGyYN~ 366 (511)
| ..|+..+|+.+.++.-+. ..+. + | .|-. + .=+++|-||.. .|| .+-+ ++
T Consensus 169 g-----pd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~----QsH---~~~~--~~ 234 (345)
T COG3693 169 G-----PDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGI----QSH---FSGD--GP 234 (345)
T ss_pred c-----cHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceee----eee---ecCC--CC
Confidence 5 589999999888754221 1211 1 1 1111 0 12666666632 355 2212 23
Q ss_pred CCCCChHHHHHHHHHcCcEEEEeecccccc
Q 010415 367 SNRDGYAPIAAMLKKHGVALNFTCVELRTV 396 (511)
Q Consensus 367 ~~rDGY~~Ia~mf~kh~~~l~FTClEM~d~ 396 (511)
...++-.. +.-|.|-|+.+..|=|+|.+-
T Consensus 235 ~~~~~~~a-~~~~~k~Gl~i~VTELD~~~~ 263 (345)
T COG3693 235 SIEKMRAA-LLKFSKLGLPIYVTELDMSDY 263 (345)
T ss_pred CHHHHHHH-HHHHhhcCCCceEEEeeeecc
Confidence 33333333 344555699999995555543
No 65
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=71.63 E-value=18 Score=40.68 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCC--ceecch---hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTP--QVYNWS---GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p--~~YdWs---~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
.-..+.|++.||++||+.-+..+-|+.+=|.+. +.-|.. .|+.|++-..+.|++-.|-| ||- -
T Consensus 90 Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fHw-----------D 157 (524)
T KOG0626|consen 90 YHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FHW-----------D 157 (524)
T ss_pred hhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ecC-----------C
Confidence 457899999999999999999999999999887 457765 59999999999999997777 464 4
Q ss_pred CChhHH
Q 010415 206 LPQWVM 211 (511)
Q Consensus 206 LP~WV~ 211 (511)
||+|+.
T Consensus 158 lPq~Le 163 (524)
T KOG0626|consen 158 LPQALE 163 (524)
T ss_pred CCHHHH
Confidence 999997
No 66
>PLN02229 alpha-galactosidase
Probab=71.47 E-value=7.8 Score=42.39 Aligned_cols=56 Identities=21% Similarity=0.397 Sum_probs=43.8
Q ss_pred cChHHHHHHHHH-----HHHcCcceEEEeeeeeeeecCC-------CceecchhHHHHHHHHHHcCCcE
Q 010415 129 VDPEILVNQLKI-----LKSINVDGVMVDCWWGIVEAHT-------PQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 129 ~~~~~~~~~L~~-----LK~~GVdGV~vdvWWGiVE~~~-------p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
++++.+.+...+ ||++|.+-|.||.=|...++.+ |.+|- +|.+.|++.+.+.|||+
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKf 144 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKL 144 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCce
Confidence 578888888887 4999999999998664333322 33444 68999999999999998
No 67
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=70.84 E-value=4.8 Score=41.03 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=40.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGG 196 (511)
+-+++..++|+|+|.+..-|+-..--+|..|. +-+++++++-+++ + . ...|-||+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-~----~ilh~cG~ 232 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-P----TILHICGN 232 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-C----cEEEECCC
Confidence 44556678899999998889844322577777 9999999999987 2 2 22588984
No 68
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=70.75 E-value=7.6 Score=39.62 Aligned_cols=76 Identities=20% Similarity=0.433 Sum_probs=57.9
Q ss_pred CCccEEEeecc---ceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 109 PYVPVYVMLPL---GIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 109 ~~vpvyVMLPL---d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
..+|||+|.== |.|-++. .-+.+..|.+..|++|++||.+.+- ..+|+.|=.-.++|.+.+. ||.|
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~~---E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSDD---ELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccChH---HHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 67899999632 2222221 2588999999999999999999764 4689999999999999887 5555
Q ss_pred EEEEeeeccC
Q 010415 186 QVVMSFHECG 195 (511)
Q Consensus 186 qvVmsFHqCG 195 (511)
--=++|-.|-
T Consensus 119 TFHrAFD~~~ 128 (241)
T COG3142 119 TFHRAFDECP 128 (241)
T ss_pred eeehhhhhcC
Confidence 4467777766
No 69
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=70.53 E-value=8.9 Score=43.14 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=41.0
Q ss_pred ChHHHHHHH-HHHHHcCcceEEE-eeeeeeeecCCCceecch-----------------hHHHHHHHHHHcCCcEEEEEe
Q 010415 130 DPEILVNQL-KILKSINVDGVMV-DCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 130 ~~~~~~~~L-~~LK~~GVdGV~v-dvWWGiVE~~~p~~YdWs-----------------~Y~~l~~mvr~~GLKvqvVms 190 (511)
+.+++...| ..||++||+.|.+ +|... |...+|- .+++|++.+.+.||+|..=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 357788886 9999999999999 66532 1122222 489999999999999954444
Q ss_pred e
Q 010415 191 F 191 (511)
Q Consensus 191 F 191 (511)
|
T Consensus 228 ~ 228 (613)
T TIGR01515 228 P 228 (613)
T ss_pred c
Confidence 4
No 70
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.48 E-value=39 Score=37.10 Aligned_cols=127 Identities=14% Similarity=0.186 Sum_probs=82.7
Q ss_pred cccChHHHHHHHHHHHHcCcceEEEeee-eeee------ecCCCc-------eecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 127 ELVDPEILVNQLKILKSINVDGVMVDCW-WGIV------EAHTPQ-------VYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 127 ~~~~~~~~~~~L~~LK~~GVdGV~vdvW-WGiV------E~~~p~-------~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
.+..+..+...|..|..+|++-|-+-|| +|.. .+...+ .=.|+-...+++.+++.||+|++=+-|-
T Consensus 59 v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 59 VLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 3567999999999999999999999999 8753 332222 1245566677788889999999877654
Q ss_pred ccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc
Q 010415 193 ECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (511)
Q Consensus 193 qCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g 269 (511)
--+=+-. .-..-=|.|.. .+.|+-.+....|.. --++.|-. ++.=++|+.+...+.-..|.
T Consensus 139 ~~a~~~s-~~~~~~p~~~~---~~~~~~~~~~~~~~~----~~~~ldPg--------~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 139 RMAPPTS-PLTKRHPHWLT---TKRPGWVYVRHQGWG----KRVWLDPG--------IPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred ccCCCCC-hhHhhCCCCcc---cCCCCeEEEecCCce----eeeEeCCC--------ChHHHHHHHHHHHHHHhCCC
Confidence 3331100 01122355665 444555555555543 22333321 67788999999999887764
No 71
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=70.25 E-value=11 Score=36.74 Aligned_cols=51 Identities=12% Similarity=0.412 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--cc--hhHHHHHHHHHHcCCcEEEEEe
Q 010415 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NW--SGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y--dW--s~Y~~l~~mvr~~GLKvqvVms 190 (511)
-++..|+.++++|+++|++ |+- .+..| ++ ..-+++.++++++||+|-.+..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~ 68 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTP 68 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecC
Confidence 5899999999999999998 321 11111 12 2567888999999999854433
No 72
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=69.02 E-value=9.6 Score=42.34 Aligned_cols=61 Identities=13% Similarity=0.327 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecch-----------------hHHHHHHHHHHcCCcEEEEEeee
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs-----------------~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
+.+++.+.|..||++||++|.+-= +.| .++.++|- .+++|++.+.+.||+|..=+-|-
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 458889999999999999997632 112 24445564 38999999999999996655564
Q ss_pred ccC
Q 010415 193 ECG 195 (511)
Q Consensus 193 qCG 195 (511)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 454
No 73
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=68.78 E-value=16 Score=32.72 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHc-CCcEEEEEeee
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL-ELKLQVVMSFH 192 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~-GLKvqvVmsFH 192 (511)
.+.+...++.|++.|||.|++.-= ++-. .|.- ---.++++.+++++. |++| |..+|
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC--~~~~-~~~~-~CP~~~~~~~~I~~~~gi~V--V~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSC--MVKG-NPHG-PCPHIDEIKKIIEEKFGIEV--VEGTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCC--EecC-CCCC-CCCCHHHHHHHHHHHhCCCE--eeecC
Confidence 678899999999999998887642 2222 1111 445599999999999 9988 88877
No 74
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=68.15 E-value=12 Score=39.97 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeec----CCCceecchhHHHHHHHHHHcCCcEEEEEeeec
Q 010415 134 LVNQLKILKSINVDGVMVDCWWGIVEA----HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdvWWGiVE~----~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHq 193 (511)
-+.-|..||++||+-|++-||=-=-.. -+-|.=|-..--++++-+++.|+|| .+-||-
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKV--l~dFHY 126 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKV--LLDFHY 126 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEE--Eeeccc
Confidence 345688999999999999999322111 1233445555556666677789999 999995
No 75
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=67.94 E-value=31 Score=34.03 Aligned_cols=47 Identities=9% Similarity=0.178 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCcceEEE-eeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 133 ILVNQLKILKSINVDGVMV-DCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~v-dvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
.....++.++++||.++.+ .+.. ..++.+.+++++++.+|.+.+.+|
T Consensus 15 ~~~~~~~~~~~~g~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 15 DRPEVLERAREAGVSAIIIVSTDP-------------EDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp THHHHHHHHHHTTEEEEEEEESSH-------------HHHHHHHHHHHHTTTEEEEEE---
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCH-------------HHhHHHHHHHhcCCCeEEEEecCC
Confidence 3677889999999998842 2222 455689999999999999999999
No 76
>PLN02591 tryptophan synthase
Probab=67.79 E-value=30 Score=35.11 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
..+|+.+|.=...|- .-.+++=++.+|++||+||-++= .-+..-.++.+.++++||.....
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipD------------LP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPD------------LPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCC------------CCHHHHHHHHHHHHHcCCeEEEE
Confidence 457888887776653 24788889999999999999971 23567788999999999999665
Q ss_pred EeeeccCCCCCCCccCCCChhHHhhhccCCCeee-ecCCCCc
Q 010415 189 MSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYF-TDREGRR 229 (511)
Q Consensus 189 msFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~f-tDr~G~r 229 (511)
.+ ++ +-+..+..+.+.-++..| ..+.|..
T Consensus 138 v~-----------Pt-t~~~ri~~ia~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 138 TT-----------PT-TPTERMKAIAEASEGFVYLVSSTGVT 167 (250)
T ss_pred eC-----------CC-CCHHHHHHHHHhCCCcEEEeeCCCCc
Confidence 54 22 235688877766666443 3555443
No 77
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=67.48 E-value=6 Score=40.31 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
.+.++++.++|+|+|.+..=|+--.--+|..|. +-+++++++-+++. ....|-||
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~------~~ilH~cG 240 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL------PTILHICG 240 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC------CcEEEECC
Confidence 445566778999999888877632222455555 88999999998875 23358897
No 78
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=66.91 E-value=3.8 Score=43.63 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=38.3
Q ss_pred cChHHHHHHHHHHHHcCcceEEEe---ee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEE
Q 010415 129 VDPEILVNQLKILKSINVDGVMVD---CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vd---vW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVm 189 (511)
..+-.+...+++++++|++||++. +| |+..+.+ . + .-++++-++++++||+|..|.
T Consensus 29 ~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e--~--~-~~~~~lk~~L~~~GL~v~~v~ 88 (382)
T TIGR02631 29 RTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE--R--D-QIVRRFKKALDETGLKVPMVT 88 (382)
T ss_pred CCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH--H--H-HHHHHHHHHHHHhCCeEEEee
Confidence 344567788999999999999864 22 3333211 1 1 226789999999999995443
No 79
>PRK08508 biotin synthase; Provisional
Probab=66.42 E-value=38 Score=34.27 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=39.3
Q ss_pred cChHHHHHHHHHHHHcCcceEEE-eeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 129 VDPEILVNQLKILKSINVDGVMV-DCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~v-dvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
.+++.+.+..+.+++.|+..+.+ +-+= +....++.+|.++++.+++.++++.+.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~------~~~~~~~e~~~ei~~~ik~~~p~l~i~ 94 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGR------GLDDKKLEYVAEAAKAVKKEVPGLHLI 94 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccC------CCCcccHHHHHHHHHHHHhhCCCcEEE
Confidence 35678888888899999988865 2111 122347899999999999988766433
No 80
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=65.38 E-value=16 Score=35.70 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecC-CCceecch--hHHHHHHHHHHcCCcEEEE
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVEAH-TPQVYNWS--GYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~-~p~~YdWs--~Y~~l~~mvr~~GLKvqvV 188 (511)
-.++..|+.++++|+++|.+.+. +.. .....+|+ ..+++.++++++||+|..+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 46889999999999999998532 221 12234565 3678999999999999654
No 81
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=65.17 E-value=7.1 Score=40.64 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=62.5
Q ss_pred HHHHHHc-CcceEEEeeeeee-----eecCCCceecchhHHHHHHHHHHcC-CcEEEEEeeeccCCCCCCCccCCCChhH
Q 010415 138 LKILKSI-NVDGVMVDCWWGI-----VEAHTPQVYNWSGYRRLFQIVRELE-LKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (511)
Q Consensus 138 L~~LK~~-GVdGV~vdvWWGi-----VE~~~p~~YdWs~Y~~l~~mvr~~G-LKvqvVmsFHqCGGNVGD~~~IpLP~WV 210 (511)
+++..++ |+|+|.+--.|+- +.++.=.+|-|-+++++++-+++.| .+ ..+|.||.. +--||...
T Consensus 161 ~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~p----iilH~cG~~-----~~~l~~~~ 231 (321)
T cd03309 161 YERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSAL----IVHHSCGAA-----ASLVPSMA 231 (321)
T ss_pred HHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCc----eEEEeCCCc-----HHHHHHHH
Confidence 3333344 9999998666765 4443334444999999999999984 33 345999821 11133332
Q ss_pred HhhhccCCCeeeecCCCCccc-------ceeee--ccCccccccCCchhHHHHHHHHHHHHHHhh
Q 010415 211 MEIGQNNPEIYFTDREGRRNS-------ECLTW--GIDKERVLRGRTAVEVYFDYMRSFRVEFNE 266 (511)
Q Consensus 211 ~e~g~~~PDI~ftDr~G~rn~-------E~lSl--~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~ 266 (511)
+..-|++-.|..-.--. +-+++ ++|...++.+.| -+.=++..+...+++..
T Consensus 232 ----e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlDp~~L~~~~t-~E~i~~~v~~~l~~~g~ 291 (321)
T cd03309 232 ----EMGVDSWNVVMTANNTAELRRLLGDKVVLAGAIDDVALDTATW-PEEDARGVAKAAAECAP 291 (321)
T ss_pred ----HcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCChHHhcCCCC-HHHHHHHHHHHHHHhCC
Confidence 23346666555431000 11222 445444445555 34445555555555554
No 82
>PRK12313 glycogen branching enzyme; Provisional
Probab=64.43 E-value=14 Score=41.66 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=46.6
Q ss_pred EEEeeccceee-CCCcccChHHHHHHH-HHHHHcCcceEEE-eeeeeeeecCCCceecch-----------------hHH
Q 010415 113 VYVMLPLGIID-MNCELVDPEILVNQL-KILKSINVDGVMV-DCWWGIVEAHTPQVYNWS-----------------GYR 172 (511)
Q Consensus 113 vyVMLPLd~V~-~~~~~~~~~~~~~~L-~~LK~~GVdGV~v-dvWWGiVE~~~p~~YdWs-----------------~Y~ 172 (511)
+|-+-+=+--. .++..-+-+.+...| ..||++||+.|.+ +|+ | .|...+|- .++
T Consensus 150 iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k 223 (633)
T PRK12313 150 IYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFM 223 (633)
T ss_pred EEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHH
Confidence 45544443221 123334557777775 9999999999985 432 2 12223343 499
Q ss_pred HHHHHHHHcCCcEEEEEee
Q 010415 173 RLFQIVRELELKLQVVMSF 191 (511)
Q Consensus 173 ~l~~mvr~~GLKvqvVmsF 191 (511)
+|++.|.+.||||..=+-|
T Consensus 224 ~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 224 YLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 9999999999999544445
No 83
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=64.10 E-value=12 Score=38.68 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHcC--CcEEEEEeeeccCCCCCCCccCCCChh
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELE--LKLQVVMSFHECGGNVGDDVHIPLPQW 209 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~G--LKvqvVmsFHqCGGNVGD~~~IpLP~W 209 (511)
..-++++.++|+|+|.+.-=|+-+ =+|.+|+ +-+.+++++-+++.| .++ .|-|||.. ++-.|
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~~------~~~~~ 255 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPDVPV-----ILFGKGAG------ELLEA 255 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCcH------HHHHH
Confidence 334556667999999754435543 3577777 999999999999984 433 37787431 22334
Q ss_pred HHhhhccCCCeeeecCC
Q 010415 210 VMEIGQNNPEIYFTDRE 226 (511)
Q Consensus 210 V~e~g~~~PDI~ftDr~ 226 (511)
+. +...|++-.|..
T Consensus 256 ~~---~~~~~~is~d~~ 269 (346)
T PRK00115 256 MA---ETGADVVGLDWT 269 (346)
T ss_pred HH---hcCCCEEeeCCC
Confidence 54 334467766654
No 84
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=63.91 E-value=34 Score=35.03 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=64.5
Q ss_pred CCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEE
Q 010415 107 GTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 107 ~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
..+.+|+.+|.=.+.|- ...+++=++.++++||+||-++=. | +....++.+.++++||++.
T Consensus 84 ~~~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIipDL--------P----~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 84 KEPDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIPDL--------P----PEESEELREAAKKHGLDLI 144 (259)
T ss_dssp HCTSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEETTS--------B----GGGHHHHHHHHHHTT-EEE
T ss_pred cCCCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEcCC--------C----hHHHHHHHHHHHHcCCeEE
Confidence 45779999998877653 246777899999999999988522 2 3566889999999999998
Q ss_pred EEEeeeccCCCCCCCccCCCChhHHhhhccCCC-eeeecCCCCc
Q 010415 187 VVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPE-IYFTDREGRR 229 (511)
Q Consensus 187 vVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ftDr~G~r 229 (511)
...+= -+.+..+..+.+.-+. |++....|..
T Consensus 145 ~lv~p------------~t~~~Ri~~i~~~a~gFiY~vs~~GvT 176 (259)
T PF00290_consen 145 PLVAP------------TTPEERIKKIAKQASGFIYLVSRMGVT 176 (259)
T ss_dssp EEEET------------TS-HHHHHHHHHH-SSEEEEESSSSSS
T ss_pred EEECC------------CCCHHHHHHHHHhCCcEEEeeccCCCC
Confidence 88871 1356788877766666 4445777653
No 85
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=63.49 E-value=4.7 Score=39.08 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=34.5
Q ss_pred CcccC-hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 126 CELVD-PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 126 ~~~~~-~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
+...| .+.++++|.+||+.||..|-+ ++|..+=..|... .|.+.++++||+|
T Consensus 51 ~k~~d~~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~ 103 (168)
T PF05706_consen 51 CKFKDWRRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAW 103 (168)
T ss_dssp -EETTEEB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EE
T ss_pred cccccccchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEE
Confidence 44555 689999999999999999865 6777555556555 5668899999987
No 86
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=63.20 E-value=29 Score=35.46 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=51.0
Q ss_pred cceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 119 LGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 119 Ld~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
+-+|.-=|.+.+.+++..--++||++|+..+....|==..-+.+-+-+-..+|+.+.+.+++.||.+ +-.+|
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~--~te~~ 99 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPV--VTEVM 99 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 3344445777899999999999999999988887663100010111122678999999999999999 55655
No 87
>PLN02808 alpha-galactosidase
Probab=62.83 E-value=14 Score=39.97 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=46.1
Q ss_pred cChHHHHHHHHH-----HHHcCcceEEEeeeeeeeecCCCceecc------hhHHHHHHHHHHcCCcE
Q 010415 129 VDPEILVNQLKI-----LKSINVDGVMVDCWWGIVEAHTPQVYNW------SGYRRLFQIVRELELKL 185 (511)
Q Consensus 129 ~~~~~~~~~L~~-----LK~~GVdGV~vdvWWGiVE~~~p~~YdW------s~Y~~l~~mvr~~GLKv 185 (511)
++++.+.+...+ ||++|.+-|.||-=|...++.+.|..-. +|.+.|++.|++.|||.
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~Glkf 113 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKL 113 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCce
Confidence 578888888887 5999999999998887666544443222 68999999999999998
No 88
>PRK09989 hypothetical protein; Provisional
Probab=62.26 E-value=19 Score=35.22 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEE
Q 010415 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
-+...|++++++|.++|++.. +..++ -+++.++++++||++-
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCC---HHHHHHHHHHcCCcEE
Confidence 578899999999999999932 12233 3678888999999983
No 89
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=61.94 E-value=40 Score=33.51 Aligned_cols=62 Identities=21% Similarity=0.211 Sum_probs=45.4
Q ss_pred CccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEE
Q 010415 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 110 ~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVm 189 (511)
.+|+.+|.=++.+- ...+++-++.++++|++||.++-- | .....++++.++++|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~----~ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P----PEEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C----HHHHHHHHHHHHHcCCcEEEEe
Confidence 46788885444321 234677899999999999999521 1 1367789999999999997777
Q ss_pred e
Q 010415 190 S 190 (511)
Q Consensus 190 s 190 (511)
+
T Consensus 137 ~ 137 (242)
T cd04724 137 A 137 (242)
T ss_pred C
Confidence 7
No 90
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=61.46 E-value=16 Score=40.63 Aligned_cols=64 Identities=14% Similarity=0.314 Sum_probs=46.0
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeec-CCCceec-------------chhHHHHHHHHHHcCCcEEEEEeeecc
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEA-HTPQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHEC 194 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~-~~p~~Yd-------------Ws~Y~~l~~mvr~~GLKvqvVmsFHqC 194 (511)
-|-+++.+.|..||++||++|-+.=.+ +. .....|+ .+.+++|++.+.++|+||..=+-|--|
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~---~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFY---VSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCC---CCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 467899999999999999999774433 11 0112232 356899999999999999666666555
Q ss_pred C
Q 010415 195 G 195 (511)
Q Consensus 195 G 195 (511)
+
T Consensus 107 s 107 (551)
T PRK10933 107 S 107 (551)
T ss_pred c
Confidence 4
No 91
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=61.02 E-value=9.9 Score=38.83 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=49.0
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCCccCCCChhHH
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHIPLPQWVM 211 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~--GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~ 211 (511)
-++++.++|+|+|.+.-=|+-+ =+|.+|+ +-+++++++-+++. |.++ .|-|||+ . ++-.++.
T Consensus 182 ~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~----~--~~~~~~~ 248 (335)
T cd00717 182 YLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-----ILFAKGA----G--GLLEDLA 248 (335)
T ss_pred HHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCC----H--HHHHHHH
Confidence 3445567999999754435432 3567777 99999999999998 4433 5667743 1 5556666
Q ss_pred hhhccCCCeeeecCC
Q 010415 212 EIGQNNPEIYFTDRE 226 (511)
Q Consensus 212 e~g~~~PDI~ftDr~ 226 (511)
+. ..|++-.|..
T Consensus 249 ~~---~~~~~s~d~~ 260 (335)
T cd00717 249 QL---GADVVGLDWR 260 (335)
T ss_pred hc---CCCEEEeCCC
Confidence 43 3577766654
No 92
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=60.73 E-value=20 Score=37.02 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecC----CCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAH----TPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN 197 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~----~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGN 197 (511)
+-+..++-..-..++|++.|.||..|.--+.. --..+.+....+|++.+++.|.+|....- |..+||
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~-~~~~~~ 100 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH-SETGGN 100 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE-CCHTTB
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEe-CCcchh
Confidence 56777788888899999999999999763321 12467789999999999999999955554 344444
No 93
>PRK04302 triosephosphate isomerase; Provisional
Probab=59.54 E-value=22 Score=34.67 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=36.4
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
..++.||++|+++|.++ ++++...+.--.++++.++++||.+ |++.|
T Consensus 76 ~~~~~l~~~G~~~vii~--------~ser~~~~~e~~~~v~~a~~~Gl~~--I~~v~ 122 (223)
T PRK04302 76 ILPEAVKDAGAVGTLIN--------HSERRLTLADIEAVVERAKKLGLES--VVCVN 122 (223)
T ss_pred hHHHHHHHcCCCEEEEe--------ccccccCHHHHHHHHHHHHHCCCeE--EEEcC
Confidence 45899999999999886 3444455666788999999999988 66633
No 94
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=59.48 E-value=16 Score=37.38 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=47.3
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCCccCCCChhHH
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHIPLPQWVM 211 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~--GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~ 211 (511)
-++++.++|+|+|.+.-=|+-+ =+|.+|+ |-+++++++-+++. +.. | .|-|||. . ++-.++.
T Consensus 185 ~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~~---i--lh~cg~~----~--~~~~~~~ 251 (338)
T TIGR01464 185 YLVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNVP---V--ILFAKGA----G--HLLEELA 251 (338)
T ss_pred HHHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC---E--EEEeCCc----H--HHHHHHH
Confidence 3444667999998864435533 4567777 99999999999987 433 3 4556643 1 3444555
Q ss_pred hhhccCCCeeeecCC
Q 010415 212 EIGQNNPEIYFTDRE 226 (511)
Q Consensus 212 e~g~~~PDI~ftDr~ 226 (511)
+ ...|++-.|..
T Consensus 252 ~---~~~~~~s~d~~ 263 (338)
T TIGR01464 252 E---TGADVVGLDWT 263 (338)
T ss_pred h---cCCCEEEeCCC
Confidence 3 34577766654
No 95
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=59.03 E-value=6.5 Score=38.36 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=52.8
Q ss_pred CccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 110 ~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
.+++=|.+|...-.... ...+....+.+...++|+|.|.+=++|+.+.+ +...+...--.++++.|++.|||+.+-
T Consensus 56 ~~~~vi~fp~g~~~~~~--k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTEP--KGYDQIVAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp EEEEEESTTTSSSTHHH--HTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred ccceEEEeCCCCCcccc--ccccchHHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666666665432110 00111167888899999999999999999886 556777777888888899999998443
No 96
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=58.57 E-value=46 Score=33.82 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=62.1
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCc---eecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHh
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVME 212 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~p~---~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e 212 (511)
.-++++.++|+|+|.+.-=++. --+|. +|-+-+++++++.+++.|.+ ..-+|-|| ..+.-++ ++.+
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~--~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG-----~~~~~~~-~l~~ 254 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGS--LISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICG-----NTTPILD-DLAD 254 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGG--GS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETT-----HG-GGHH-HHHT
T ss_pred HHHHHHHHhCCCcccccccccC--CCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECC-----chHHHHH-HHHh
Confidence 3456777999999966652222 22344 67899999999999999993 23568998 3222233 3333
Q ss_pred hhccCCCeeeecCCCCcc--------cceeeeccCccccccCCchhHHHHHHHHHHH
Q 010415 213 IGQNNPEIYFTDREGRRN--------SECLTWGIDKERVLRGRTAVEVYFDYMRSFR 261 (511)
Q Consensus 213 ~g~~~PDI~ftDr~G~rn--------~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~ 261 (511)
...|++-.|..=.-. +=+|-=++|..-+|. -||-+++++--+-..
T Consensus 255 ---~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 255 ---LGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIE 307 (343)
T ss_dssp ---SS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHH
T ss_pred ---cCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCcccccc-CCHHHHHHHHHHHHH
Confidence 335666665432221 122223555545677 788888875555544
No 97
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=57.90 E-value=9.5 Score=27.31 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCcceEEEe
Q 010415 135 VNQLKILKSINVDGVMVD 152 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vd 152 (511)
.+..+.|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345578888999999987
No 98
>PLN02389 biotin synthase
Probab=57.06 E-value=21 Score=38.22 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCC-------ceecchhHHHHHHHHHHcCCcE
Q 010415 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p-------~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
-+.+|++||++|+|.+.+ .+|. .| ..-+|+.+.+.++.+++.|+++
T Consensus 177 ~~E~l~~LkeAGld~~~~-----~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH-----NLDT-SREYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred CHHHHHHHHHcCCCEEEe-----eecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 357889999999999988 4563 22 1238999999999999999988
No 99
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=56.31 E-value=22 Score=34.75 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
.++..|++++++|.+||++ |+ +.. ...+++.++++++||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl---~~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEF---MF------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEE---cC------CCC---CCHHHHHHHHHHcCCcE
Confidence 4888899999999999999 22 111 24788889999999998
No 100
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=56.31 E-value=61 Score=33.13 Aligned_cols=92 Identities=13% Similarity=0.234 Sum_probs=66.9
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
..+|+.+|.=+..|- .-.+++-++.++++|||||-++-. | +.-..++++.++++||+....
T Consensus 90 ~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEEE
Confidence 457888887776543 236788899999999999999753 1 245789999999999999777
Q ss_pred EeeeccCCCCCCCccCCCChhHHhhhccCCC-eeeecCCCCccc
Q 010415 189 MSFHECGGNVGDDVHIPLPQWVMEIGQNNPE-IYFTDREGRRNS 231 (511)
Q Consensus 189 msFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ftDr~G~rn~ 231 (511)
++- + +.+..+..+.+.-.. |++..+.|..-.
T Consensus 151 v~P-----------t-T~~eri~~i~~~a~gFIY~vS~~GvTG~ 182 (263)
T CHL00200 151 IAP-----------T-SSKSRIQKIARAAPGCIYLVSTTGVTGL 182 (263)
T ss_pred ECC-----------C-CCHHHHHHHHHhCCCcEEEEcCCCCCCC
Confidence 772 2 356788777655554 555577776654
No 101
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=56.25 E-value=1.9e+02 Score=29.68 Aligned_cols=125 Identities=9% Similarity=0.156 Sum_probs=80.4
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeee----eee--------eec-------CCCceecchhHHHHHHHHHHcCCcEE
Q 010415 126 CELVDPEILVNQLKILKSINVDGVMVDCW----WGI--------VEA-------HTPQVYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 126 ~~~~~~~~~~~~L~~LK~~GVdGV~vdvW----WGi--------VE~-------~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
..+...+.+++.+..|...+.+.+++-.= |-+ .|. ...+.|.=+-++++++.|++.|+.|.
T Consensus 10 R~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 10 RHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred ccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 45677899999999999999988765433 422 111 12457888999999999999999996
Q ss_pred EEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeee-----------------cCC-------------CCcccceeee
Q 010415 187 VVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFT-----------------DRE-------------GRRNSECLTW 236 (511)
Q Consensus 187 vVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ft-----------------Dr~-------------G~rn~E~lSl 236 (511)
|-+- .|.=.....+.+|++.-. +.. .....+++-+
T Consensus 90 PEiD---------------~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHi 154 (303)
T cd02742 90 PEID---------------MPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHI 154 (303)
T ss_pred Eecc---------------chHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEe
Confidence 6553 332111111222222110 000 0002378999
Q ss_pred ccCccccccCCchhHHHHHHHHHHHHHHhhh
Q 010415 237 GIDKERVLRGRTAVEVYFDYMRSFRVEFNEF 267 (511)
Q Consensus 237 ~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~ 267 (511)
|.|+.... .++.+.|..|++...+..+..
T Consensus 155 GgDE~~~~--~~~~~l~~~f~~~~~~~v~~~ 183 (303)
T cd02742 155 GGDEAHFK--QDRKHLMSQFIQRVLDIVKKK 183 (303)
T ss_pred cceecCCC--CCHHHHHHHHHHHHHHHHHHc
Confidence 99998644 577788888888877777654
No 102
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=56.02 E-value=28 Score=36.87 Aligned_cols=85 Identities=9% Similarity=0.179 Sum_probs=55.3
Q ss_pred cChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 010415 129 VDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGDD 201 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~G--VdGV~vdvWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~ 201 (511)
.+.+.+.+-++.+++.| +|++.+|.||+. . -+.|.|+ ..+++++.+++.|+|+ ++..|-
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~---~~~f~~d~~~FPd~~~~~~~l~~~G~~~--~~~~~P-------- 105 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQD-G---YGDFTWDPERFPDPKQMIDELHDQGIKV--VLWVHP-------- 105 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSB-T---TBTT-B-TTTTTTHHHHHHHHHHTT-EE--EEEEES--------
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccc-c---ccccccccccccchHHHHHhHhhCCcEE--EEEeec--------
Confidence 56888999999998875 689999999876 2 2355555 5799999999999998 565553
Q ss_pred ccCCCChh---HHhhhccCCCeeeecCCCCc
Q 010415 202 VHIPLPQW---VMEIGQNNPEIYFTDREGRR 229 (511)
Q Consensus 202 ~~IpLP~W---V~e~g~~~PDI~ftDr~G~r 229 (511)
.|....- ..+.++ ..++++++.+|..
T Consensus 106 -~v~~~~~~~~~~~~~~-~~~~~v~~~~g~~ 134 (441)
T PF01055_consen 106 -FVSNDSPDYENYDEAK-EKGYLVKNPDGSP 134 (441)
T ss_dssp -EEETTTTB-HHHHHHH-HTT-BEBCTTSSB
T ss_pred -ccCCCCCcchhhhhHh-hcCceeecccCCc
Confidence 2222222 222232 2488999999944
No 103
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=55.81 E-value=22 Score=43.21 Aligned_cols=62 Identities=15% Similarity=0.357 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCcceEEE-eee-eeeee-cC----------CCceecch-------------------------hH
Q 010415 130 DPEILVNQLKILKSINVDGVMV-DCW-WGIVE-AH----------TPQVYNWS-------------------------GY 171 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~v-dvW-WGiVE-~~----------~p~~YdWs-------------------------~Y 171 (511)
+-.++...|..||++||+.|.+ +|+ .+.+. .. +...|+|- .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 3578888999999999999976 343 33332 10 12345554 38
Q ss_pred HHHHHHHHHcCCcEEEEEee
Q 010415 172 RRLFQIVRELELKLQVVMSF 191 (511)
Q Consensus 172 ~~l~~mvr~~GLKvqvVmsF 191 (511)
+++++-+.+.||+|..=+-|
T Consensus 558 K~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccc
Confidence 89999999999999554445
No 104
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=55.78 E-value=39 Score=36.04 Aligned_cols=114 Identities=19% Similarity=0.152 Sum_probs=72.3
Q ss_pred ccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 111 VPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 111 vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
-|+++-.| |.+.+.+++...-+.||++||..+.-..|==..-+.+-+-..+.+|+.|.+.+++.||.+ +-+
T Consensus 118 ~~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~--~t~ 188 (360)
T PRK12595 118 NQSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAV--ISE 188 (360)
T ss_pred CeeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCE--EEe
Confidence 34555566 667788999999999999999999876663121222234446789999999999999998 545
Q ss_pred eeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceee-eccCccccc--cCC
Q 010415 191 FHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLT-WGIDKERVL--RGR 247 (511)
Q Consensus 191 FHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lS-l~~D~~pvl--~GR 247 (511)
.|. +.-+-...+ ..|++-.--.=-+|.+.|. .+--..||+ +|.
T Consensus 189 v~d-------------~~~~~~l~~-~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~ 234 (360)
T PRK12595 189 IVN-------------PADVEVALD-YVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGL 234 (360)
T ss_pred eCC-------------HHHHHHHHH-hCCeEEECcccccCHHHHHHHHccCCcEEEeCCC
Confidence 441 222222222 2566655544455555554 343456775 665
No 105
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=54.87 E-value=1.9e+02 Score=29.86 Aligned_cols=132 Identities=16% Similarity=0.239 Sum_probs=80.9
Q ss_pred cccChHHHHHHHHHHHHcCcceEEE---eee--eeeeecCC-CceecchhHHHHHHHHHHcCCcEEEEEee---------
Q 010415 127 ELVDPEILVNQLKILKSINVDGVMV---DCW--WGIVEAHT-PQVYNWSGYRRLFQIVRELELKLQVVMSF--------- 191 (511)
Q Consensus 127 ~~~~~~~~~~~L~~LK~~GVdGV~v---dvW--WGiVE~~~-p~~YdWs~Y~~l~~mvr~~GLKvqvVmsF--------- 191 (511)
.+-..+.+++.++.|...|.+++++ |-+ -|.-|-.. .+.|.=+-++++.+.|++.|+.|.|-+-+
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~ 91 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK 91 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh
Confidence 5667799999999999999999976 333 44444322 67888899999999999999999765431
Q ss_pred ----eccCCCCC---CCccCCCCh---hHHhhhccCCCeeeecCCCCcccceeeeccCcccccc---------CCchhHH
Q 010415 192 ----HECGGNVG---DDVHIPLPQ---WVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLR---------GRTAVEV 252 (511)
Q Consensus 192 ----HqCGGNVG---D~~~IpLP~---WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~---------GRTpi~~ 252 (511)
++.. .++ ++-++.-|. .+.+.-+.-=++ ...+++-+|+|+..-+. .++..+.
T Consensus 92 ~~~~~~l~-~~~~~~~~l~~~~~~t~~fi~~li~ev~~~--------f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 92 HPEFRHLR-EVDDPPQTLCPGEPKTYDFIEEMIRQVLEL--------HPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred Cccccccc-ccCCCCCccCCCChhHHHHHHHHHHHHHHh--------CCCCeEEECCCcccccCCCHHHHHhcCCCHHHH
Confidence 1000 000 011111111 000000000000 11378889999987652 4566788
Q ss_pred HHHHHHHHHHHHhhh
Q 010415 253 YFDYMRSFRVEFNEF 267 (511)
Q Consensus 253 Y~dfm~SF~~~f~~~ 267 (511)
|.+|++...+...+.
T Consensus 163 ~~~~~~~v~~~v~~~ 177 (301)
T cd06565 163 YLEHLKKVLKIIKKR 177 (301)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888877777654
No 106
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=54.78 E-value=37 Score=37.58 Aligned_cols=64 Identities=13% Similarity=0.229 Sum_probs=47.9
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-Cceec-------------chhHHHHHHHHHHcCCcEEEEEeeecc
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-PQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHEC 194 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~-p~~Yd-------------Ws~Y~~l~~mvr~~GLKvqvVmsFHqC 194 (511)
=|-+.+.+.|..||++||++|-+.=.. |..+ ...|+ ...+++|++.|++.|+||..=+-|.-+
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~---~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~ 101 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFF---QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHT 101 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCc---CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 467899999999999999999775432 3211 22332 467899999999999999776777666
Q ss_pred C
Q 010415 195 G 195 (511)
Q Consensus 195 G 195 (511)
+
T Consensus 102 s 102 (539)
T TIGR02456 102 S 102 (539)
T ss_pred C
Confidence 5
No 107
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=54.75 E-value=32 Score=38.24 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=48.4
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee-------------cchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
-+-+++.+.|..||++||++|-+.--.-.-+ ....| ....+++|++.|++.||||..=+-+.-|+
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~ 101 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTS 101 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 4678999999999999999997764432111 11234 34578999999999999997777776665
No 108
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.63 E-value=38 Score=33.54 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=41.0
Q ss_pred CccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEE
Q 010415 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 110 ~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVm 189 (511)
.+|+.+|.=+... .. ..++-++.++++|+++|.+... -+|. .....++++.++++|++.-+.+
T Consensus 74 ~~Pl~lM~y~n~~-----~~---~~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 74 SVPIILMTYLEDY-----VD---SLDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred CCCEEEEEecchh-----hh---CHHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4677666433321 12 3445578889999999999421 0121 2346789999999999994444
Q ss_pred e
Q 010415 190 S 190 (511)
Q Consensus 190 s 190 (511)
+
T Consensus 137 ~ 137 (244)
T PRK13125 137 S 137 (244)
T ss_pred C
Confidence 4
No 109
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=54.55 E-value=30 Score=37.54 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee---c-------------------chhHHHHHHHHHHcCCcEEEE
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY---N-------------------WSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y---d-------------------Ws~Y~~l~~mvr~~GLKvqvV 188 (511)
++.+.+.|..||.+||++|-+.-.+--........| | ..-+++|++.|.+.|+||.+=
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 678999999999999999987654322211011222 2 234889999999999999888
Q ss_pred EeeeccCC
Q 010415 189 MSFHECGG 196 (511)
Q Consensus 189 msFHqCGG 196 (511)
+-|--|++
T Consensus 101 ~V~NH~~~ 108 (479)
T PRK09441 101 VVLNHKAG 108 (479)
T ss_pred ECcccccC
Confidence 88877765
No 110
>PRK10658 putative alpha-glucosidase; Provisional
Probab=54.39 E-value=52 Score=37.89 Aligned_cols=87 Identities=11% Similarity=0.224 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCc
Q 010415 130 DPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGDDV 202 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~G--VdGV~vdvWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~ 202 (511)
+.+.+.+-++.+++.| +|.|.+|+.|.. ...-+.|.|+ .-+++++-.++.|+|+ ++..+ +
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~--~~~i~---------P 347 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKI--CVWIN---------P 347 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEE--EEecc---------C
Confidence 4667778888888765 589999998842 1112345554 4578889999999999 44433 2
Q ss_pred cCCCChhHHhhhccCCCeeeecCCCCcc
Q 010415 203 HIPLPQWVMEIGQNNPEIYFTDREGRRN 230 (511)
Q Consensus 203 ~IpLP~WV~e~g~~~PDI~ftDr~G~rn 230 (511)
.|..-.-+.+++.+ -+.|.++.+|..-
T Consensus 348 ~i~~~s~~f~e~~~-~gy~vk~~~G~~~ 374 (665)
T PRK10658 348 YIAQKSPLFKEGKE-KGYLLKRPDGSVW 374 (665)
T ss_pred CcCCCchHHHHHHH-CCeEEECCCCCEe
Confidence 33332344555544 4789999998753
No 111
>PLN02692 alpha-galactosidase
Probab=53.11 E-value=25 Score=38.51 Aligned_cols=208 Identities=16% Similarity=0.234 Sum_probs=109.7
Q ss_pred cChHHHHHHHHHH-----HHcCcceEEEeeeeeeeecCCCceecc------hhHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 010415 129 VDPEILVNQLKIL-----KSINVDGVMVDCWWGIVEAHTPQVYNW------SGYRRLFQIVRELELKLQVVMSFHECGGN 197 (511)
Q Consensus 129 ~~~~~~~~~L~~L-----K~~GVdGV~vdvWWGiVE~~~p~~YdW------s~Y~~l~~mvr~~GLKvqvVmsFHqCGGN 197 (511)
++++.+.+...+| |++|.+-|.||.=|-..++.+.|..-. +|.+.|++.|++.|||. ..|.+-|.
T Consensus 70 i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf----GIy~d~G~ 145 (412)
T PLN02692 70 IDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL----GIYSDAGY 145 (412)
T ss_pred cCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce----EEEecCCc
Confidence 4677777776654 888999999998664434433333322 78999999999999998 44544442
Q ss_pred CCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccc-c---CCchhHHHHHHHHHHHHHHhhhhcCceE
Q 010415 198 VGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVL-R---GRTAVEVYFDYMRSFRVEFNEFFVDGII 273 (511)
Q Consensus 198 VGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl-~---GRTpi~~Y~dfm~SF~~~f~~~~g~~~I 273 (511)
.+|.-.-|.=. + + .+. --+-+.+||+|-+-+- . +..+.+.|. .|++++.. -|
T Consensus 146 --~tC~~~~pGS~---g--~-----e~~---DA~~fA~WGvDylK~D~C~~~~~~~~~~y~----~m~~AL~~-tG---- 201 (412)
T PLN02692 146 --FTCSKTMPGSL---G--H-----EEQ---DAKTFASWGIDYLKYDNCNNDGSKPTVRYP----VMTRALMK-AG---- 201 (412)
T ss_pred --cccCCCCCCch---H--H-----HHH---HHHHHHhcCCCEEeccccCCCCcchhHHHH----HHHHHHHH-hC----
Confidence 23422112100 0 0 000 0123667999877662 2 333444444 44444443 12
Q ss_pred EEEEeecccCcccCCCCC-CC--CCCCccCCCcccccccHHHHHHHHHHHHHcCcccccCCC-CCCC---ceeeeEeccc
Q 010415 274 AEIEVGLGPCGELRYPTY-PA--KHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGP-AFEG---TCISAKLSGI 346 (511)
Q Consensus 274 ~eI~VGLGPaGELRYPSy-p~--~~GW~~PGiGEFQCYDky~~~~lr~~a~~~G~~~Wg~gP-~F~~---v~l~~Kv~gi 346 (511)
-.|..+|-|-|... |.. -. .+-||.-|- +++-=+.++..+.+.+.-... .|| .|.+ .+++- .|
T Consensus 202 RpI~~SlC~wg~~~-p~~w~~~~~n~WR~s~D--I~d~W~sv~~~~~~~~~~~~~----agPG~wnDpDML~VGn--~g- 271 (412)
T PLN02692 202 RPIFFSLCEWGDMH-PALWGSKVGNSWRTTND--ISDTWDSMISRADMNEVYAEL----ARPGGWNDPDMLEVGN--GG- 271 (412)
T ss_pred CCeEEEecCCCcCC-hhhhhhhcCCccccccc--cccchHhHHHHHHHHHHHhhc----cCCCCCCCCCeEeECC--CC-
Confidence 24667777777632 321 11 234776542 233333444444333221100 123 2221 23330 00
Q ss_pred cccCCCCCCHHHHHhcccCCCCCCChHHHHHHHHHcCcEEEEeeccccc
Q 010415 347 HWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRT 395 (511)
Q Consensus 347 HWwy~t~sHaAElTAGyYN~~~rDGY~~Ia~mf~kh~~~l~FTClEM~d 395 (511)
-+.+-|..-+.|-+=-+.-|.+.| +++.
T Consensus 272 --------------------lT~~E~rThfsLWai~~SPLiiG~-DL~~ 299 (412)
T PLN02692 272 --------------------MTKDEYIVHFSIWAISKAPLLLGC-DVRN 299 (412)
T ss_pred --------------------CCHHHHHHHHHHHHHHhCcceecC-Cccc
Confidence 122457788888888888888887 5553
No 112
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=52.93 E-value=51 Score=33.36 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhh
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIG 214 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g 214 (511)
..+|+.....||+.|.+-+ ...+++...+.++.+|+.|++|.+-+. +..-.-|..+.+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~----------~a~~~~~~~~~~~~ 144 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLM----------AISGYSDEELLELL 144 (266)
T ss_pred HHHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEE----------eecCCCHHHHHHHH
Confidence 3468888899999999865 223789999999999999999977766 22223477776643
Q ss_pred ----ccCCC-eeeecCCCCccc
Q 010415 215 ----QNNPE-IYFTDREGRRNS 231 (511)
Q Consensus 215 ----~~~PD-I~ftDr~G~rn~ 231 (511)
+.-+| |.+.|-.|.-++
T Consensus 145 ~~~~~~g~~~i~l~DT~G~~~P 166 (266)
T cd07944 145 ELVNEIKPDVFYIVDSFGSMYP 166 (266)
T ss_pred HHHHhCCCCEEEEecCCCCCCH
Confidence 22233 666777775543
No 113
>PRK13753 dihydropteroate synthase; Provisional
Probab=52.13 E-value=2e+02 Score=30.11 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=63.5
Q ss_pred ceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee------cchhHHHHHHHHHHcCCcEEEEEeeec
Q 010415 120 GIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY------NWSGYRRLFQIVRELELKLQVVMSFHE 193 (511)
Q Consensus 120 d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y------dWs~Y~~l~~mvr~~GLKvqvVmsFHq 193 (511)
|..++++...+.+...+..+.|-+.|+|-|-|.- |+..|+-= +|.=...+++.+++.+.. +|.
T Consensus 13 DSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGg-----eSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~----ISI-- 81 (279)
T PRK13753 13 DSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGP-----AASHPDARPVSPADEIRRIAPLLDALSDQMHR----VSI-- 81 (279)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECC-----CCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc----EEE--
Confidence 3345567777878888888888999999999873 55556532 466666778888876543 342
Q ss_pred cCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccC-cccc
Q 010415 194 CGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGID-KERV 243 (511)
Q Consensus 194 CGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D-~~pv 243 (511)
||.+...=.-.++.|. | +.-|-+|-.+++-+..-.+ ..|+
T Consensus 82 ------DT~~~~va~~al~aGa---d-iINDVsg~~d~~~~~vva~~~~~v 122 (279)
T PRK13753 82 ------DSFQPETQRYALKRGV---G-YLNDIQGFPDPALYPDIAEADCRL 122 (279)
T ss_pred ------ECCCHHHHHHHHHcCC---C-EEEeCCCCCchHHHHHHHHcCCCE
Confidence 4554444444444453 2 5677777765555443333 3444
No 114
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=51.87 E-value=1.2e+02 Score=28.71 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
..+..|+.|+++||+.+.+--.+ +..++.+.+++++. .++.+.+++|
T Consensus 16 ~~~~~l~~~~~~gv~~~v~~~~~------------~~~~~~~~~la~~~-~~i~~~~G~h 62 (251)
T cd01310 16 DRDDVLARAREAGVIKIIVVGTD------------LKSSKRALELAKKY-DNVYAAVGLH 62 (251)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCC------------HHHHHHHHHHHHhC-CCeEEEEeeC
Confidence 35788899999999988776332 12456677788888 7787888888
No 115
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=51.68 E-value=33 Score=34.46 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=34.2
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEee
Q 010415 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsF 191 (511)
..+.++++++|+.||++|++.|.+- ...+ -.++.++|.+.||-|..=+..
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~---h~p~-----------~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTH---HYPP-----------SPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEET---TS-------------SHHHHHHHHHHT-EEEEE-S-
T ss_pred cCCHHHHHHHHHHHHhcCcceEEcc---cccC-----------cHHHHHHHhhcCCEEEEeccc
Confidence 4578999999999999999999982 1121 157788999999999666654
No 116
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.63 E-value=40 Score=35.44 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=50.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhc
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQ 215 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~ 215 (511)
.+|+...+.||+.|.|-.-+... ..-.+.++.+|+.|+++.+.+. ...-.-|..+.+..+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~----------~~~~~~i~~ak~~G~~v~~~l~----------~a~~~~~e~l~~~a~ 151 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA----------DVSEQHIGLARELGMDTVGFLM----------MSHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH----------HHHHHHHHHHHHCCCeEEEEEE----------eccCCCHHHHHHHHH
Confidence 57889999999999987643332 2469999999999999988776 223345666655322
Q ss_pred ----cCCC-eeeecCCCCc
Q 010415 216 ----NNPE-IYFTDREGRR 229 (511)
Q Consensus 216 ----~~PD-I~ftDr~G~r 229 (511)
.-+| |.+.|-.|.-
T Consensus 152 ~~~~~Ga~~i~i~DT~G~~ 170 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGAL 170 (337)
T ss_pred HHHhCCCCEEEeCCCCCCC
Confidence 2233 5667777754
No 117
>PRK07360 FO synthase subunit 2; Reviewed
Probab=50.21 E-value=15 Score=38.68 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeee---------cCCCceecchhHHHHHHHHHHcCCcEE
Q 010415 134 LVNQLKILKSINVDGVMVDCWWGIVE---------AHTPQVYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdvWWGiVE---------~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
.+..|++||++|++.+. +.-. .-.|++-.+..|.+.++.+++.||++-
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~ 218 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTT 218 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCce
Confidence 36789999999999994 1111 114777788888999999999999993
No 118
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=49.34 E-value=1.5e+02 Score=35.67 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCcceEEE-eee-eeee
Q 010415 134 LVNQLKILKSINVDGVMV-DCW-WGIV 158 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~v-dvW-WGiV 158 (511)
.-.-|+.||++||.-|++ +|+ ++-|
T Consensus 288 gi~hLk~L~eLGVThVeLLPv~df~tv 314 (898)
T TIGR02103 288 GVQHLKKLADAGVTHLHLLPTFDIATV 314 (898)
T ss_pred hhHHHHHHHhCCCcEEEEcChhhcCcc
Confidence 446788999999999985 676 7654
No 119
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=49.20 E-value=25 Score=40.95 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecc----hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNW----SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdW----s~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
..+++..++.|.++|+..|-||.= | .|.-....-+| .++-+.+.++-+ |++-...+++|-|=||..+ -
T Consensus 580 A~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~----i 652 (758)
T PRK05222 580 ALAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND----I 652 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH----H
Confidence 567888899999999999999987 6 34323344567 444566666665 7754446799999999775 1
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccceeeec----cCcc---ccccCCchhHHHHHHHHHHHHHHhhhhc
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWG----IDKE---RVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~----~D~~---pvl~GRTpi~~Y~dfm~SF~~~f~~~~g 269 (511)
+|. +.+-+-|.++.+-. +.+.|-|... .++. =|.+.++|-=---|-++.-..+..++++
T Consensus 653 ~~~----i~~l~vD~~~lE~~-rs~~e~L~~~~~~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v~ 718 (758)
T PRK05222 653 IDA----IAALDADVISIETS-RSDMELLDAFEDFGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVIP 718 (758)
T ss_pred HHH----HHhCCCCEEEEEec-CCCchhHHHhhccCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 222 23567787776622 2223333221 1221 1346677654444555555555555553
No 120
>PLN02877 alpha-amylase/limit dextrinase
Probab=48.74 E-value=30 Score=41.64 Aligned_cols=63 Identities=22% Similarity=0.433 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCcceEEE-eee-eeee-ecCC-----------------------------Cceecchh----------
Q 010415 133 ILVNQLKILKSINVDGVMV-DCW-WGIV-EAHT-----------------------------PQVYNWSG---------- 170 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~v-dvW-WGiV-E~~~-----------------------------p~~YdWs~---------- 170 (511)
+.-.-|+.||++||..|++ +|+ .+-| |... ...|+|-|
T Consensus 374 ~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEg 453 (970)
T PLN02877 374 AGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKG 453 (970)
T ss_pred hHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCc
Confidence 3445688999999999986 666 5444 2110 23488976
Q ss_pred --------------HHHHHHHHHHcCCcEEEEEee-eccC
Q 010415 171 --------------YRRLFQIVRELELKLQVVMSF-HECG 195 (511)
Q Consensus 171 --------------Y~~l~~mvr~~GLKvqvVmsF-HqCG 195 (511)
++++++-+.++||+|..=+-| |-..
T Consensus 454 SYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~ 493 (970)
T PLN02877 454 SYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHS 493 (970)
T ss_pred ccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccC
Confidence 899999999999999333333 5444
No 121
>PRK09505 malS alpha-amylase; Reviewed
Probab=47.10 E-value=42 Score=38.80 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcCcceEEEe-eeeeeeec-----------CCCcee-------------cchhHHHHHHHHHHcCCc
Q 010415 130 DPEILVNQLKILKSINVDGVMVD-CWWGIVEA-----------HTPQVY-------------NWSGYRRLFQIVRELELK 184 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vd-vWWGiVE~-----------~~p~~Y-------------dWs~Y~~l~~mvr~~GLK 184 (511)
|.+.+.+.|..||++||++|-+. ++=.+-.. .+...| ....+++|++-+.+.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 57889999999999999999864 22111000 000111 345799999999999999
Q ss_pred EEEEEee
Q 010415 185 LQVVMSF 191 (511)
Q Consensus 185 vqvVmsF 191 (511)
|..=+-|
T Consensus 308 VilD~V~ 314 (683)
T PRK09505 308 ILFDVVM 314 (683)
T ss_pred EEEEECc
Confidence 9555544
No 122
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=47.02 E-value=57 Score=32.79 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=45.7
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeec---CCCceecchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEA---HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~---~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
+.+++.+++.++.+++.|++.|-+=.=++..-+ .+...++-..++++++++++.|+++ ..|.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeCC
Confidence 356889999999999999999976432222111 0112577788999999999999976 456543
No 123
>PLN00196 alpha-amylase; Provisional
Probab=46.51 E-value=62 Score=35.27 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec------c--------hhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN------W--------SGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd------W--------s~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
..+.+.+.|..||++||+.|-+.== .|+.++..|+ - .-+++|++.+++.|+||.+=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 4688999999999999999988742 2333333342 2 259999999999999997666665555
Q ss_pred C
Q 010415 196 G 196 (511)
Q Consensus 196 G 196 (511)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 3
No 124
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=46.48 E-value=16 Score=37.83 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCcceEEE---eee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 135 VNQLKILKSINVDGVMV---DCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~v---dvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
+..|++||++|++.+.. +.+ -.+...-.|++..+.-+.+.+++++++||++-..
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~ 198 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTAT 198 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccce
Confidence 68899999999998851 222 1111222455667777899999999999998443
No 125
>PRK09936 hypothetical protein; Provisional
Probab=46.31 E-value=40 Score=35.55 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecch----hHHHHHHHHHHcCCcEEEEEe
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS----GYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs----~Y~~l~~mvr~~GLKvqvVms 190 (511)
.+++|+.-|+++|..|++-+.|- | .-- +++ ||. +..++++.+++.|||| ++.
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQ-W-t~y-G~~----~fg~~~g~La~~l~~A~~~Gl~v--~vG 91 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQ-W-TRY-GDA----DFGGQRGWLAKRLAAAQQAGLKL--VVG 91 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE-e-eec-cCC----CcccchHHHHHHHHHHHHcCCEE--EEc
Confidence 57899999999999999999875 3 222 111 443 6788999999999999 444
No 126
>PRK09875 putative hydrolase; Provisional
Probab=45.28 E-value=3.8e+02 Score=27.92 Aligned_cols=67 Identities=15% Similarity=0.305 Sum_probs=46.3
Q ss_pred CCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEe--eeccCCCCCCC
Q 010415 124 MNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS--FHECGGNVGDD 201 (511)
Q Consensus 124 ~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms--FHqCGGNVGD~ 201 (511)
.++.+.+.+...+.|+.+|++|+..| ||+= |.-+ =..=+.+.++.++.|+.| |+| ||.
T Consensus 26 ~~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T--------~~g~-GRd~~~l~~is~~tgv~I--v~~TG~y~-------- 85 (292)
T PRK09875 26 VDCRLDQYAFICQEMNDLMTRGVRNV-IEMT--------NRYM-GRNAQFMLDVMRETGINV--VACTGYYQ-------- 85 (292)
T ss_pred cccccccHHHHHHHHHHHHHhCCCeE-EecC--------CCcc-CcCHHHHHHHHHHhCCcE--EEcCcCCC--------
Confidence 35567788999999999999999876 4432 2111 122467888999999888 665 332
Q ss_pred ccCCCChhHH
Q 010415 202 VHIPLPQWVM 211 (511)
Q Consensus 202 ~~IpLP~WV~ 211 (511)
..-.|.|+.
T Consensus 86 -~~~~p~~~~ 94 (292)
T PRK09875 86 -DAFFPEHVA 94 (292)
T ss_pred -CccCCHHHh
Confidence 223788886
No 127
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=44.43 E-value=47 Score=32.18 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeec
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHq 193 (511)
+...+..+++.+.++|+++|.+-+.++..+ ..+......++.++++++|+++ |+-.|-
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~--iie~~~ 131 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPL--IAWMYP 131 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCE--EEEEec
Confidence 456777788999999999998888877432 4567778889999999999998 444343
No 128
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.00 E-value=2.3e+02 Score=29.35 Aligned_cols=118 Identities=10% Similarity=0.205 Sum_probs=79.3
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEE---eee-eeee------e------------------cCCCceecchhHHHHHH
Q 010415 125 NCELVDPEILVNQLKILKSINVDGVMV---DCW-WGIV------E------------------AHTPQVYNWSGYRRLFQ 176 (511)
Q Consensus 125 ~~~~~~~~~~~~~L~~LK~~GVdGV~v---dvW-WGiV------E------------------~~~p~~YdWs~Y~~l~~ 176 (511)
...+...+.+++.|..|...+.+.+++ |=| |-+- + ....+.|.=+-++++++
T Consensus 10 aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~ 89 (326)
T cd06564 10 GRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIA 89 (326)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHH
Confidence 345667899999999999999999886 323 2110 0 11356788889999999
Q ss_pred HHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHH
Q 010415 177 IVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDY 256 (511)
Q Consensus 177 mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~df 256 (511)
.|++.|+.| -+.|-.|.=.....+.+|++......+......|.+. .+.=.+|
T Consensus 90 yA~~rgI~v---------------IPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~------------~~~t~~f 142 (326)
T cd06564 90 YAKDRGVNI---------------IPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDIS------------NPEAVKF 142 (326)
T ss_pred HHHHcCCeE---------------eccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCC------------CHHHHHH
Confidence 999999999 4566688755555567777666543333333444444 2334457
Q ss_pred HHHHHHHHhhhhc
Q 010415 257 MRSFRVEFNEFFV 269 (511)
Q Consensus 257 m~SF~~~f~~~~g 269 (511)
+.+.-+++.+.+.
T Consensus 143 ~~~l~~E~~~~f~ 155 (326)
T cd06564 143 VKALFDEYLDGFN 155 (326)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777777664
No 129
>PRK04326 methionine synthase; Provisional
Probab=43.90 E-value=45 Score=34.09 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhH
Q 010415 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV 210 (511)
+.+...+++|+++|++.|.+|.= |.. .+. ++..+.+.++.+-+ +++.. ...|-|.||.. |.|
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~--v~lH~C~G~~~-------~~~- 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAK--LGLHVCYGDYS-------RIA- 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCE--EEEEEeCCCcH-------HHH-
Confidence 56778889999999999999974 554 222 33444455544443 44543 35699987743 112
Q ss_pred HhhhccCCCeeeecCC
Q 010415 211 MEIGQNNPEIYFTDRE 226 (511)
Q Consensus 211 ~e~g~~~PDI~ftDr~ 226 (511)
....+.+-|.+..|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 1223555676766664
No 130
>TIGR03586 PseI pseudaminic acid synthase.
Probab=43.79 E-value=52 Score=34.80 Aligned_cols=131 Identities=14% Similarity=0.195 Sum_probs=73.5
Q ss_pred cEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeee--eeeeecCCCc---------------------eecc
Q 010415 112 PVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCW--WGIVEAHTPQ---------------------VYNW 168 (511)
Q Consensus 112 pvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvW--WGiVE~~~p~---------------------~YdW 168 (511)
|+||-+-++ +|.+| +.+.-.+-.++.|++|+|.|-.--| =.++.+..+. .+.+
T Consensus 1 ~~~iIAEiG-~NH~G---~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 76 (327)
T TIGR03586 1 PPFIIAELS-ANHNG---SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPW 76 (327)
T ss_pred CCEEEEEEC-CCCCC---hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCH
Confidence 455555555 34444 3466666677889999999887654 1111111111 2336
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCccc-ceee-eccCccccc--
Q 010415 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNS-ECLT-WGIDKERVL-- 244 (511)
Q Consensus 169 s~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~-E~lS-l~~D~~pvl-- 244 (511)
.+|.+|++.+++.||.+ +-+ +=|...+ ..+. +-+.+ +|+=.+|+-++ +.|. .+--..||+
T Consensus 77 e~~~~L~~~~~~~Gi~~--~st-------pfd~~sv---d~l~---~~~v~-~~KI~S~~~~n~~LL~~va~~gkPvils 140 (327)
T TIGR03586 77 EWHKELFERAKELGLTI--FSS-------PFDETAV---DFLE---SLDVP-AYKIASFEITDLPLIRYVAKTGKPIIMS 140 (327)
T ss_pred HHHHHHHHHHHHhCCcE--EEc-------cCCHHHH---HHHH---HcCCC-EEEECCccccCHHHHHHHHhcCCcEEEE
Confidence 78899999999999998 222 1111111 2232 22223 55555555444 4443 344456775
Q ss_pred cCCchhHHHHHHHHHHHH
Q 010415 245 RGRTAVEVYFDYMRSFRV 262 (511)
Q Consensus 245 ~GRTpi~~Y~dfm~SF~~ 262 (511)
+|.+-++.-..-.+-|++
T Consensus 141 tG~~t~~Ei~~Av~~i~~ 158 (327)
T TIGR03586 141 TGIATLEEIQEAVEACRE 158 (327)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 777766666666666653
No 131
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.72 E-value=66 Score=33.86 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhh
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIG 214 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g 214 (511)
..+|+...+.||+.|.|-.-+.-. .--++.++.+|+.|+++++.+. ...-.-|.-+.+..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~----------d~~~~~i~~ak~~G~~v~~~l~----------~s~~~~~e~l~~~a 149 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA----------DVSEQHIGMARELGMDTVGFLM----------MSHMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH----------HHHHHHHHHHHHcCCeEEEEEE----------cccCCCHHHHHHHH
Confidence 357899999999999987743322 2468999999999999976665 22223455555432
Q ss_pred ----ccCCC-eeeecCCCCc
Q 010415 215 ----QNNPE-IYFTDREGRR 229 (511)
Q Consensus 215 ----~~~PD-I~ftDr~G~r 229 (511)
+.-+| |.++|-.|.-
T Consensus 150 ~~~~~~Ga~~i~i~DT~G~~ 169 (333)
T TIGR03217 150 KLMESYGADCVYIVDSAGAM 169 (333)
T ss_pred HHHHhcCCCEEEEccCCCCC
Confidence 12233 5667777754
No 132
>PLN02433 uroporphyrinogen decarboxylase
Probab=43.64 E-value=46 Score=34.61 Aligned_cols=77 Identities=9% Similarity=0.059 Sum_probs=48.3
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceec---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHh
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVME 212 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e 212 (511)
.-+++..++|++.|.+.-=|+-+ -+|.+|+ |-+.+++++-+++.+-.+ -...|.||. + ++-.++.
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG~----~---~~~~~~~- 250 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANGS----G---GLLERLA- 250 (345)
T ss_pred HHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCCC----H---HHHHHHH-
Confidence 33445667999999765546543 3567777 999999999999862122 234588982 1 3334454
Q ss_pred hhccCCCeeeecCC
Q 010415 213 IGQNNPEIYFTDRE 226 (511)
Q Consensus 213 ~g~~~PDI~ftDr~ 226 (511)
+...|++-.|..
T Consensus 251 --~~~~~~i~~d~~ 262 (345)
T PLN02433 251 --GTGVDVIGLDWT 262 (345)
T ss_pred --hcCCCEEEcCCC
Confidence 334466665554
No 133
>PRK14706 glycogen branching enzyme; Provisional
Probab=43.43 E-value=50 Score=37.80 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=42.3
Q ss_pred CcccChHHHHHHH-HHHHHcCcceEEEeeeeeeeecCCCceecchh-----------------HHHHHHHHHHcCCcEEE
Q 010415 126 CELVDPEILVNQL-KILKSINVDGVMVDCWWGIVEAHTPQVYNWSG-----------------YRRLFQIVRELELKLQV 187 (511)
Q Consensus 126 ~~~~~~~~~~~~L-~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~-----------------Y~~l~~mvr~~GLKvqv 187 (511)
+.+-.-+.+...| ..||++||+.|.+=- +.|- |...+|-+ ++++++.+.++||+|..
T Consensus 161 g~~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 161 GWFLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3344556777777 689999999988632 3442 34445543 78999999999999943
Q ss_pred EEee
Q 010415 188 VMSF 191 (511)
Q Consensus 188 VmsF 191 (511)
=+-+
T Consensus 236 D~v~ 239 (639)
T PRK14706 236 DWVP 239 (639)
T ss_pred Eecc
Confidence 3333
No 134
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.36 E-value=51 Score=33.66 Aligned_cols=69 Identities=10% Similarity=0.002 Sum_probs=46.3
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
.+|+||-+-.|--+ ..-...+++-|+..|++|++.|+|. .+--...-.-..++++++++.|||+.+=
T Consensus 53 ~~V~v~~GGtl~E~-----~~~q~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~~~rlI~~~~~~g~~v~~E 119 (237)
T TIGR03849 53 YGIKVYPGGTLFEI-----AHSKGKFDEYLNECDELGFEAVEIS--------DGSMEISLEERCNLIERAKDNGFMVLSE 119 (237)
T ss_pred cCCeEeCCccHHHH-----HHHhhhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHHHHHHHHHHHhCCCeEecc
Confidence 35777666322211 1223788889999999999999874 2333345566788999999999998554
Q ss_pred Ee
Q 010415 189 MS 190 (511)
Q Consensus 189 ms 190 (511)
+.
T Consensus 120 vG 121 (237)
T TIGR03849 120 VG 121 (237)
T ss_pred cc
Confidence 33
No 135
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=43.35 E-value=21 Score=36.74 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeec--------CCCceecchhHHHHHHHHHHcCCcEE
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEA--------HTPQVYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~--------~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
+..|+.||++|++.+.- +-+|. -.|++..|..|.+.++.++++|+++.
T Consensus 143 ~e~l~~Lk~aG~~~~~~----~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~ 198 (340)
T TIGR03699 143 REVLERLKEAGLDSIPG----GGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTT 198 (340)
T ss_pred HHHHHHHHHcCCCcCCC----CcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 78999999999996631 12332 13667789999999999999999974
No 136
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=43.27 E-value=1.1e+02 Score=30.40 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=48.3
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCc--cCCC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDV--HIPL 206 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~--~IpL 206 (511)
.+...+.+.|+...+.|++-|.+. ||.-.+ ......-+.++++++.+.+.|.=| |.| .||-|... .+|.
T Consensus 86 ~~~~~i~~Ai~~Ai~~gadIIn~S--~g~~~~-~~~~~~~~~l~~ai~~A~~~Gilv--vaa----AGN~g~~~~~~~~~ 156 (247)
T cd07491 86 ITPQSAAKAIEAAVEKKVDIISMS--WTIKKP-EDNDNDINELENAIKEALDRGILL--FCS----ASDQGAFTGDTYPP 156 (247)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEee--eecccc-cccccchHHHHHHHHHHHhCCeEE--EEe----cCCCCCcCCCcccC
Confidence 356789999999999999988877 665332 111223577888888888888544 555 46766554 4555
Q ss_pred Chh
Q 010415 207 PQW 209 (511)
Q Consensus 207 P~W 209 (511)
|.+
T Consensus 157 pa~ 159 (247)
T cd07491 157 PAA 159 (247)
T ss_pred ccc
Confidence 654
No 137
>PRK08508 biotin synthase; Provisional
Probab=42.65 E-value=31 Score=34.93 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc-------eecchhHHHHHHHHHHcCCcE
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ-------VYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~-------~YdWs~Y~~l~~mvr~~GLKv 185 (511)
+.+|++||++|++.+.++ +|. ++. -.+|.-..+.++.+++.|+++
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 153 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGL 153 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 778999999999999986 554 321 246777888888999999987
No 138
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=42.62 E-value=3e+02 Score=27.65 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCC---
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL--- 206 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpL--- 206 (511)
+++.+.+-|++|.++|...|-+|+.- .|+ +.++=...+.+++.++++|=++ +++.+.-...-+.....++
T Consensus 62 ~R~~~A~ll~~L~~~ga~~I~~Di~f--~~~---~~~~~~~D~~la~al~~~~~~v--vl~~~~~~~~~~~~~~~~~~~~ 134 (310)
T PF05226_consen 62 PRSVYARLLDRLAAAGAKAIGFDILF--DEP---DPSNPEGDQALAEALRRAGNRV--VLASVFSPEEDGARPEEPPLPL 134 (310)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeee--cCC---CCCCchHHHHHHHHHHhCCCeE--EEEEecccccccccccCccccc
Confidence 67889999999999999999999964 343 1111127888999999998777 6665532222222222222
Q ss_pred ChhHH---hhhccCCCeeeecCCCCccccee
Q 010415 207 PQWVM---EIGQNNPEIYFTDREGRRNSECL 234 (511)
Q Consensus 207 P~WV~---e~g~~~PDI~ftDr~G~rn~E~l 234 (511)
|.=.. ..|-. -+..|.+|....-.+
T Consensus 135 p~l~~~~~~~G~v---n~~~D~DG~vRr~~l 162 (310)
T PF05226_consen 135 PPLASAAAGLGFV---NVSPDSDGVVRRFPL 162 (310)
T ss_pred hhhhhcccceeeE---EeeECCCCcEeeeec
Confidence 22211 11222 255688887766555
No 139
>PRK06256 biotin synthase; Validated
Probab=42.10 E-value=27 Score=35.79 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc-------eecchhHHHHHHHHHHcCCcEE
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ-------VYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~-------~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
+..|+.||++|++.|.+. +|. .+. ..+|..+.+.++.++++|+++.
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~ 204 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPC 204 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeec
Confidence 356788999999999875 354 322 2478888899999999999873
No 140
>PRK07094 biotin synthase; Provisional
Probab=41.75 E-value=36 Score=34.61 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCcceEEEeee---eeeeecCCCceecchhHHHHHHHHHHcCCcEE
Q 010415 135 VNQLKILKSINVDGVMVDCW---WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvW---WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
+..|+.||++|++.|.+.+= -.+.+.-.+ ...|+.+.+.++.++++|+++.
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~ 182 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVG 182 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeec
Confidence 46788999999999987541 111122223 5789999999999999999863
No 141
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=41.66 E-value=52 Score=33.62 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCce------ecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQV------YNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~------YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~I 204 (511)
.+++.+++++|..+|+.-|-+|.= .+.+.-.... .+|.-..+.++.+- .+..+ .++.|-|+||..+..
T Consensus 153 a~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~v~~H~C~~~~~~~~-- 226 (324)
T PF01717_consen 153 AEAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGEDA--TVGVHVCRGNYPSIL-- 226 (324)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STTTS--EEEEEESSSCHCTTH--
T ss_pred HHHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCCCC--EEEEEecCccchhhH--
Confidence 567888999999999999999976 2222211111 12332222222221 24454 669999999854321
Q ss_pred CCChhHHhhhccCCCeeeecCCCCc
Q 010415 205 PLPQWVMEIGQNNPEIYFTDREGRR 229 (511)
Q Consensus 205 pLP~WV~e~g~~~PDI~ftDr~G~r 229 (511)
-...+.+-|.++-+-+..+
T Consensus 227 ------~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 ------PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp ------HHHHCSS-SEEEEEETSST
T ss_pred ------HHHhhcccceEEeecccCC
Confidence 2334667787776666555
No 142
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=40.52 E-value=55 Score=34.57 Aligned_cols=252 Identities=13% Similarity=0.078 Sum_probs=125.9
Q ss_pred HHHHHHHHHHcCcceEEE--eeeeeeeec--CCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChh
Q 010415 134 LVNQLKILKSINVDGVMV--DCWWGIVEA--HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~v--dvWWGiVE~--~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~W 209 (511)
...++++++++|++.|.+ .++...++. .......|.-..+.++.+++.|+++++.+. +..-.-|..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e----------da~r~~~~~ 142 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE----------DATRTDIDF 142 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe----------ecCCCCHHH
Confidence 357788899999998877 333332332 112344577788999999999999976554 223334777
Q ss_pred HHhhh----ccCC-CeeeecCCCCcccceee----eccCccccccCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeec
Q 010415 210 VMEIG----QNNP-EIYFTDREGRRNSECLT----WGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGL 280 (511)
Q Consensus 210 V~e~g----~~~P-DI~ftDr~G~rn~E~lS----l~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I~eI~VGL 280 (511)
+.+.. +.-+ .|.+.|-.|.-.++.+. .-.+..++ +--+-+--|+-.+.+..++.... | +.-|...+
T Consensus 143 l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~---~l~~H~Hnd~GlA~AN~laA~~a-G-a~~vd~s~ 217 (363)
T TIGR02090 143 LIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKL---PISVHCHNDFGLATANSIAGVKA-G-AEQVHVTV 217 (363)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCc---eEEEEecCCCChHHHHHHHHHHC-C-CCEEEEEe
Confidence 76642 1122 47777877765553221 11111110 00012234444555666666554 3 56788888
Q ss_pred ccCcccCCCCCCCCC----CCccCCCcccccccHHHHHHHHHHHHH-cCcccccCCCCCCCceeeeEecccccc--CCC-
Q 010415 281 GPCGELRYPTYPAKH----GWKYPGIGEFQCYDKYLMKSLSKAAEA-RGHLFWARGPAFEGTCISAKLSGIHWW--YKT- 352 (511)
Q Consensus 281 GPaGELRYPSyp~~~----GW~~PGiGEFQCYDky~~~~lr~~a~~-~G~~~Wg~gP~F~~v~l~~Kv~giHWw--y~t- 352 (511)
++-|| | ...+... .-+. ..|.-.-+|-..+..+.+..++ .|.+-..+-|... -.+-+--+|||.. .+.
T Consensus 218 ~GlGe-r-aGN~~lE~vv~~L~~-~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG-~~~f~h~sGiH~~~i~k~~ 293 (363)
T TIGR02090 218 NGIGE-R-AGNAALEEVVMALKY-LYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVG-ENAFAHESGIHVDGVIENP 293 (363)
T ss_pred ecccc-c-cccccHHHHHHHHHH-hhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchh-HHHHHHhcchhHHHHcCCc
Confidence 88886 1 1222110 0000 0121223566566666665544 3555444444110 0011123455543 111
Q ss_pred ---CCCHHHHHhcc--cCCCCCCChHHHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHh
Q 010415 353 ---ASHAAELTAGF--YNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWD 422 (511)
Q Consensus 353 ---~sHaAElTAGy--YN~~~rDGY~~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~ 422 (511)
..+..|+.-.= +--....|=..|...+++.|..+. +. . -..|+.+|++.+.+
T Consensus 294 ~~Ye~~~P~~vG~~~~~~~g~~SG~~~i~~~l~~~g~~~~-------~~--~---------~~~~~~~vk~~~~~ 350 (363)
T TIGR02090 294 LTYEPISPEVVGNKRRIILGKHSGRHAVEAKLKELGIKVT-------DE--Q---------LKEILKRIKEIGDK 350 (363)
T ss_pred ccCCCCCHHHcCCcceeechhhccHHHHHHHHHHcCCCCC-------HH--H---------HHHHHHHHHHHHHc
Confidence 12333332110 112245677777777777664332 11 1 25677777777754
No 143
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=40.35 E-value=29 Score=35.44 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCcceEE-Ee--ee-eeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 134 LVNQLKILKSINVDGVM-VD--CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~-vd--vW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
.+..|++||++|++.+. +. .. -.+...-.|++..|.-+.+.++.+++.|+++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~ 161 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPT 161 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 47889999999999774 11 11 1111222377889999999999999999998
No 144
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.11 E-value=68 Score=32.41 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=45.6
Q ss_pred CccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEE
Q 010415 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 110 ~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVm 189 (511)
.+|+..|+=.+.|- .-.+++-++.++++||+||-+.- |+ .+.-.++++.++++||+...++
T Consensus 87 ~~plv~m~Y~Npi~-------~~G~e~f~~~~~~aGvdgviipD-----lp-------~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 87 NIPIGLLTYYNLIF-------RKGVEEFYAKCKEVGVDGVLVAD-----LP-------LEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CCCEEEEEeccHHh-------hhhHHHHHHHHHHcCCCEEEECC-----CC-------hHHHHHHHHHHHHCCCcEEEEE
Confidence 46766665544331 34778889999999999999883 22 2456789999999999996666
Q ss_pred e
Q 010415 190 S 190 (511)
Q Consensus 190 s 190 (511)
+
T Consensus 148 ~ 148 (256)
T TIGR00262 148 A 148 (256)
T ss_pred C
Confidence 6
No 145
>PRK15108 biotin synthase; Provisional
Probab=39.15 E-value=4e+02 Score=28.06 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
+++.+.+..+.+++.|+.-|.+..=| + .|-.-++.+|.++++.+++.|+++ ++|
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g---~--~p~~~~~e~i~~~i~~ik~~~i~v--~~s 130 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAW---K--NPHERDMPYLEQMVQGVKAMGLET--CMT 130 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecC---C--CCCcchHHHHHHHHHHHHhCCCEE--EEe
Confidence 45788888889999999998664333 1 344567899999999999998875 444
No 146
>PRK15452 putative protease; Provisional
Probab=39.09 E-value=32 Score=37.69 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=31.0
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEee
Q 010415 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDC 153 (511)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdv 153 (511)
.+++|||.+|.-. .+ .+-+.+...|+.|+++|||||.|.-
T Consensus 58 ~g~kvyvt~n~i~--~e---~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 58 LGKKFYVVVNIAP--HN---AKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred cCCEEEEEecCcC--CH---HHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 5699999998332 22 2347788889999999999999875
No 147
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=39.00 E-value=1.8e+02 Score=36.08 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=38.9
Q ss_pred HHHHHHHHcCcceEEE-eeeeeeeecC------------C-------Ccee---cchhHHHHHHHHHHcCCcEEEEEee-
Q 010415 136 NQLKILKSINVDGVMV-DCWWGIVEAH------------T-------PQVY---NWSGYRRLFQIVRELELKLQVVMSF- 191 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~v-dvWWGiVE~~------------~-------p~~Y---dWs~Y~~l~~mvr~~GLKvqvVmsF- 191 (511)
..|..||++||+.|.+ +|+=..-|.. . +..| .-..++++++-+.++||+|..=+-|
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~N 270 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFN 270 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 3455999999999976 3331111110 0 1111 3456899999999999999655555
Q ss_pred eccCCC
Q 010415 192 HECGGN 197 (511)
Q Consensus 192 HqCGGN 197 (511)
|-+.+|
T Consensus 271 Ht~~~~ 276 (1221)
T PRK14510 271 HTGESN 276 (1221)
T ss_pred cccCCC
Confidence 655544
No 148
>PRK05402 glycogen branching enzyme; Provisional
Probab=38.28 E-value=73 Score=36.82 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=41.3
Q ss_pred cccChHHHHHHH-HHHHHcCcceEEEeeeeeeeecCCCceecc-----------------hhHHHHHHHHHHcCCcEEEE
Q 010415 127 ELVDPEILVNQL-KILKSINVDGVMVDCWWGIVEAHTPQVYNW-----------------SGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 127 ~~~~~~~~~~~L-~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW-----------------s~Y~~l~~mvr~~GLKvqvV 188 (511)
..-+-+++...| ..||++||+.|.+-=- .|. |...+| ..+++|++.|.+.||+|..=
T Consensus 260 ~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 260 RFLSYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred cccCHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 334557888885 9999999999976431 121 111122 24899999999999999444
Q ss_pred Eee-ec
Q 010415 189 MSF-HE 193 (511)
Q Consensus 189 msF-Hq 193 (511)
+-| |-
T Consensus 335 ~V~NH~ 340 (726)
T PRK05402 335 WVPAHF 340 (726)
T ss_pred ECCCCC
Confidence 444 54
No 149
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=38.14 E-value=71 Score=37.96 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee-------------cchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
+.+.+.+.|..|+++||+.|-+.=-+--... +..-| ....++++++.++++||+|..=+-+.-++
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~g-s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPG-STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCC-CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4578999999999999999977654432211 22233 36789999999999999996655555444
No 150
>PRK03906 mannonate dehydratase; Provisional
Probab=37.18 E-value=52 Score=35.57 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=36.4
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
.|..+|++||+||....- .-......+-...+++-++|+++||+|-||=|
T Consensus 15 ~l~~~rQ~G~~~iv~~l~----~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs 64 (385)
T PRK03906 15 TLEDIRQPGATGIVTALH----DIPVGEVWPVEEILARKAEIEAAGLEWSVVES 64 (385)
T ss_pred hHHHHhcCCCCceeecCC----CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 478899999999997642 11011334555688889999999999988766
No 151
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=36.99 E-value=35 Score=35.68 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCcceEE-E--eee-eeeeecCCCceecchhHHHHHHHHHHcCCcEE
Q 010415 134 LVNQLKILKSINVDGVM-V--DCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~-v--dvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (511)
.+..|++||++|++.+. . ... --+...-.|++..|.-+.+.++.++++|+++-
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 46679999999999775 1 111 11112223667778889999999999999983
No 152
>PLN02960 alpha-amylase
Probab=36.82 E-value=84 Score=37.73 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=41.1
Q ss_pred ccChHHHH-HHHHHHHHcCcceEEEeeeeeeeecCCCceecchh-----------------HHHHHHHHHHcCCcEEEEE
Q 010415 128 LVDPEILV-NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSG-----------------YRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 128 ~~~~~~~~-~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~-----------------Y~~l~~mvr~~GLKvqvVm 189 (511)
+-.-+++. ..|..||++||+.|.+- .+.|- ++..+|-+ +++|++.+.+.||+| ||
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~V--IL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLV--FL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEE--EE
Confidence 34556665 55999999999999874 23442 33444543 899999999999999 55
Q ss_pred ee
Q 010415 190 SF 191 (511)
Q Consensus 190 sF 191 (511)
-+
T Consensus 485 Dv 486 (897)
T PLN02960 485 DI 486 (897)
T ss_pred Ee
Confidence 53
No 153
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=36.71 E-value=94 Score=30.81 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=49.2
Q ss_pred EeeccceeeCCCcccChHHHHHHHHHHH-----HcCcc----eEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 115 VMLPLGIIDMNCELVDPEILVNQLKILK-----SINVD----GVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 115 VMLPLd~V~~~~~~~~~~~~~~~L~~LK-----~~GVd----GV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
+++|-+.|. +|.+.|.++.+.-|++|+ .+|.. .|.|+.|+.-+|+ +.+.+.++.+||++
T Consensus 24 ~~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~ 91 (239)
T TIGR02529 24 VMQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEV 91 (239)
T ss_pred Eeccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCce
Confidence 456666565 788999999999999998 34553 5677888887776 57888999999999
Q ss_pred EEEEe
Q 010415 186 QVVMS 190 (511)
Q Consensus 186 qvVms 190 (511)
..++.
T Consensus 92 ~~li~ 96 (239)
T TIGR02529 92 LHVLD 96 (239)
T ss_pred EEEee
Confidence 76665
No 154
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=36.25 E-value=60 Score=38.08 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHH----HHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLF----QIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~----~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
..+++..++.|.++|+..|-||.= |. |...-..-+|..|.+.+ +++. .|++-..-+++|-|-||..+
T Consensus 585 A~alr~Ev~~L~~aG~~~IQIDEPal~--e~~~~~~~~~~~~l~~av~af~~~~-~~v~~~~~I~~H~C~gnf~~----- 656 (766)
T PLN02475 585 ALAIKDEVEDLEKAGITVIQIDEAALR--EGLPLRKSEHAFYLDWAVHSFRITN-CGVQDTTQIHTHMCYSNFND----- 656 (766)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCcchh--hcCCcCccCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEEecCCcHH-----
Confidence 457788889999999999999986 63 33222346676665444 4443 35533335778999999664
Q ss_pred CChhHH-hhhccCCCeeeecCC
Q 010415 206 LPQWVM-EIGQNNPEIYFTDRE 226 (511)
Q Consensus 206 LP~WV~-e~g~~~PDI~ftDr~ 226 (511)
+. .+.+-+-|.++.|-+
T Consensus 657 ----I~~~i~~l~~D~~~~E~~ 674 (766)
T PLN02475 657 ----IIHSIIDMDADVITIENS 674 (766)
T ss_pred ----HHHHHHhCCCCEEEEEcC
Confidence 22 234667787776644
No 155
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=36.06 E-value=59 Score=35.48 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=34.9
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
.|+.+|++||+||....-- + + .....+-...+++-++|.++||+|-||=|
T Consensus 15 ~l~~irQ~G~~giV~al~~-~--p-~gevW~~~~i~~~k~~ie~~GL~~~vvEs 64 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I--P-NGEVWEKEEIRKRKEYIESAGLHWSVVES 64 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C--C-CCCCCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3778888999999866521 1 1 11233445577888999999999988766
No 156
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=36.00 E-value=8.3 Score=39.91 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=26.0
Q ss_pred eeeEEeeCCccccCCc-ChhHHHHHHHHhcc
Q 010415 460 SAFTYLRLSPVLTDGH-NFIEFERFVKRMHG 489 (511)
Q Consensus 460 ~~FTylRm~~~lf~~~-n~~~F~~FVr~m~~ 489 (511)
.=||.+|||.+++.|. +|..+..|++.+.-
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~alek 126 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALEK 126 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHhe
Confidence 3499999999999994 79999999998854
No 157
>PRK08445 hypothetical protein; Provisional
Probab=35.98 E-value=41 Score=35.40 Aligned_cols=55 Identities=9% Similarity=0.139 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCcceEE---Eeee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEE
Q 010415 135 VNQLKILKSINVDGVM---VDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~---vdvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVm 189 (511)
+..|++||++|++-+. +... -.+-+.-.|+.-.-.-|.+..+.+++.||++-.-|
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~ 202 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATM 202 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEE
Confidence 6899999999999553 3322 22223333666677777999999999999995443
No 158
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=35.98 E-value=82 Score=32.32 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHHHHHHHH---HcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC------CCccC
Q 010415 134 LVNQLKILK---SINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG------DDVHI 204 (511)
Q Consensus 134 ~~~~L~~LK---~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVG------D~~~I 204 (511)
++.++.+|| ++|++.+..- =-||-+.|.+..+.+++.|+++-++-++=-+. |.. .-|.|
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ-----------~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~-s~~~~~~~~~~~Gi 214 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQ-----------LFYDVDNFLKFVNDCRAIGIDCPIVPGIMPIN-NYASFLRRAKWSKT 214 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeecc-----------ceecHHHHHHHHHHHHHcCCCCCEEeeccccC-CHHHHHHHHhcCCC
Confidence 444555554 4999988653 35788999999999999998875554433222 111 14568
Q ss_pred CCChhHHhhhc
Q 010415 205 PLPQWVMEIGQ 215 (511)
Q Consensus 205 pLP~WV~e~g~ 215 (511)
.+|.||.+.-+
T Consensus 215 ~vP~~l~~~l~ 225 (281)
T TIGR00677 215 KIPQEIMSRLE 225 (281)
T ss_pred CCCHHHHHHHH
Confidence 89999997654
No 159
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=35.77 E-value=1.4e+02 Score=35.97 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee-------------cchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
+-+.+.+.|..|+++||+.|-+.=-+--... +...| ..+.++++++.++++||||..=+-+--++
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 3578999999999999999977654322111 11222 35789999999999999996666665555
No 160
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=35.38 E-value=27 Score=34.28 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=15.8
Q ss_pred ecchhHHHHHHHHHHcCCcE
Q 010415 166 YNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 166 YdWs~Y~~l~~mvr~~GLKv 185 (511)
|+|+.|+.+++.+|++|++|
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipv 105 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPV 105 (213)
T ss_dssp --GGGTHHHHHHHHTSS--E
T ss_pred CchHHHHHHHHHHHHCCCCE
Confidence 68999999999999999998
No 161
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=35.38 E-value=64 Score=33.23 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHH----HHHHHHHHcCCcEEEEEe
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYR----RLFQIVRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~----~l~~mvr~~GLKvqvVms 190 (511)
.-..||++|+++|.|. +++++-.+.-=+ +-+..++++||+. |+|
T Consensus 80 S~~mL~d~G~~~viiG--------HSERR~~~~E~d~~i~~K~~aa~~~Gl~p--IlC 127 (251)
T COG0149 80 SAEMLKDLGAKYVLIG--------HSERRLYFGETDELIAKKVKAAKEAGLTP--ILC 127 (251)
T ss_pred CHHHHHHcCCCEEEEC--------ccccccccccchHHHHHHHHHHHHCCCeE--EEE
Confidence 3467999999999997 788998998888 7788999999997 998
No 162
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=35.26 E-value=34 Score=40.64 Aligned_cols=49 Identities=31% Similarity=0.629 Sum_probs=38.4
Q ss_pred cceEEEeeeeeeeecCCCcee---cchhHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 010415 146 VDGVMVDCWWGIVEAHTPQVY---NWSGYR---RLFQIVRELELKLQVVMSFHECGGNVGDD 201 (511)
Q Consensus 146 VdGV~vdvWWGiVE~~~p~~Y---dWs~Y~---~l~~mvr~~GLKvqvVmsFHqCGGNVGD~ 201 (511)
+.-||++ .=-+..++-| +|.-|+ .|+++++++|.+++ =||.=||.||-.
T Consensus 558 ~QEVMlG----YSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr---lFHGRGGtVGRG 612 (910)
T COG2352 558 VQEVMLG----YSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR---LFHGRGGSVGRG 612 (910)
T ss_pred ceEEEec----ccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE---EEccCCCCCCCC
Confidence 8889985 3344445555 799886 58999999999985 499999999864
No 163
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=35.22 E-value=61 Score=32.96 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=37.3
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHH----HHHcCCcEEEEEe
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQI----VRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~m----vr~~GLKvqvVms 190 (511)
....||++|++.|.+. +++++=.+.-=++++.. +.++||+. |+|
T Consensus 78 S~~mLkd~G~~~viiG--------HSERR~~f~Etd~~v~~K~~~a~~~gl~p--IvC 125 (250)
T PRK00042 78 SAEMLKDLGVKYVIIG--------HSERRQYFGETDELVNKKVKAALKAGLTP--ILC 125 (250)
T ss_pred CHHHHHHCCCCEEEeC--------cccccCccCcCHHHHHHHHHHHHHCCCEE--EEE
Confidence 4578999999999996 67777777777888887 99999998 888
No 164
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=35.07 E-value=97 Score=30.30 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
..++..|..+.++|+++|.+ |.+-.....+..++=...+++-++++++||++
T Consensus 10 ~~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 35788999999999999998 33322221122233345888999999999985
No 165
>PRK15108 biotin synthase; Provisional
Probab=34.89 E-value=61 Score=34.07 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCcee-------cchhHHHHHHHHHHcCCcE
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------NWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y-------dWs~Y~~l~~mvr~~GLKv 185 (511)
+..|++||++|+|.+.++. |. .|+.| +|....+..+.+++.|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~l-----eT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNL-----DT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeecc-----cc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 7789999999999988854 32 22222 5666777777888889977
No 166
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=34.66 E-value=2.2e+02 Score=27.50 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeee----eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCW----WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvW----WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
+.+.++..+++++..|++.|.+-+= +-..--....+...+-..++++++++.|+++..-+- +..-.
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~----------~~~~~ 134 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE----------DASRT 134 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET----------TTGGS
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc----------ccccc
Q ss_pred CChhHHhh----hccCCC-eeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhh
Q 010415 206 LPQWVMEI----GQNNPE-IYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNE 266 (511)
Q Consensus 206 LP~WV~e~----g~~~PD-I~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~ 266 (511)
=|..+.+. .+..+| |.+.|-.|.- +|.++| ++.+.+++++.+
T Consensus 135 ~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~------------------~P~~v~-~lv~~~~~~~~~ 181 (237)
T PF00682_consen 135 DPEELLELAEALAEAGADIIYLADTVGIM------------------TPEDVA-ELVRALREALPD 181 (237)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEEETTS-S-------------------HHHHH-HHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHcCCeEEEeeCccCCc------------------CHHHHH-HHHHHHHHhccC
No 167
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.49 E-value=94 Score=33.10 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEE
Q 010415 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (511)
...-..+.++++|.|+|.+=|||+-=+...-+.-......++.+-|++.||-+-+
T Consensus 107 ~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 107 LDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred cccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 3444567799999999999999993222111567888999999999999999843
No 168
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.48 E-value=1e+02 Score=30.77 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=35.8
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
.+++..++.|++.|.+-+-... ..-..++++.+++.|+++++.++
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~----------~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTE----------ADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhh----------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 6678888999999988654432 24578899999999999988775
No 169
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=34.33 E-value=1.3e+02 Score=35.83 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=35.6
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 126 CELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 126 ~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
|...+.++++++|+.||++|++-|.+- +.=|. .+..++|-+.||=|
T Consensus 315 G~~~~~~~~~~dl~lmk~~n~N~vRts---HyP~~-----------~~~ydLcDelGllV 360 (808)
T COG3250 315 GRVTDEDAMERDLKLMKEANMNSVRTS---HYPNS-----------EEFYDLCDELGLLV 360 (808)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEec---CCCCC-----------HHHHHHHHHhCcEE
Confidence 556789999999999999999999874 44333 34567777888776
No 170
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=34.07 E-value=79 Score=31.34 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=56.5
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhcc
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQN 216 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~ 216 (511)
....||++|+++|.+. +++++|.=+--.+-++.+.++||+. |+|. .-|.+.-..
T Consensus 73 S~~mLkd~G~~~viiG--------HSERRf~Etdi~~Kv~~a~~~gl~~--IvCi----------------~~v~~q~~~ 126 (205)
T TIGR00419 73 SAEMLKDIGAKGTLIN--------HSERRMKLADIEKKIARLKELGLTS--VVCT----------------NNVLTTAAA 126 (205)
T ss_pred CHHHHHHcCCCEEEEC--------cccCCCCccHHHHHHHHHHHCCCEE--EEEE----------------HHHHHHHHh
Confidence 4578999999999996 5666676666677778899999987 8885 222221110
Q ss_pred CCCeeeecCCCCcccceeeeccCccccc---cCCchhHHHHHHHHHHHH
Q 010415 217 NPEIYFTDREGRRNSECLTWGIDKERVL---RGRTAVEVYFDYMRSFRV 262 (511)
Q Consensus 217 ~PDI~ftDr~G~rn~E~lSl~~D~~pvl---~GRTpi~~Y~dfm~SF~~ 262 (511)
. . -+-+-++ =+||- .|+||....-+.+.+|..
T Consensus 127 --~-~---------~~~~vIA--YEPvWAIGtG~~as~~~~~~v~~~ir 161 (205)
T TIGR00419 127 --A-A---------LEPDVVA--VEPPELIGTGIPVSPAQPEVVHGSVR 161 (205)
T ss_pred --h-h---------hcCeEEE--ECCHHHhCCCCCCCHHHHHHHHHHHH
Confidence 0 0 0111122 13542 799999888888888777
No 171
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=34.03 E-value=87 Score=35.23 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=53.4
Q ss_pred cchhHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCe-eeecCCCCccc----ceee--e
Q 010415 167 NWSGYR---RLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEI-YFTDREGRRNS----ECLT--W 236 (511)
Q Consensus 167 dWs~Y~---~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI-~ftDr~G~rn~----E~lS--l 236 (511)
.|+-|+ +|.++++++|+++.+ ||.+||.||-- ..|+|. +..+-...|.. -+|-|.-.|.. ++.. .
T Consensus 216 ~w~l~~A~~~L~~~~~~~gv~i~~---fhGrGg~~~RG-Ggpp~~-~~ail~q~~g~~r~TeQga~rY~~~~e~~~~av~ 290 (494)
T PRK13655 216 VLSVKYALSRLYELEEELGVEIYP---ILGVGSLPFRG-HLSPEN-LENVLEEYPGVYTFTVQSAFRYDYPYEEVKKAIE 290 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---eccCCCCCCCC-CCChHH-HHHHHhCCCCCeEEEeccccccCCCHHHHHHHHH
Confidence 566665 577788999999855 89999999854 223222 23333455554 44544432222 2211 0
Q ss_pred ccCccccccCCchhHHHHHHHHHHHHHHhhhhc
Q 010415 237 GIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (511)
Q Consensus 237 ~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g 269 (511)
.+-+-....-..|.+.+++.|..+.+.....|-
T Consensus 291 ~~~~~~~~~p~~~~~~~~~~m~~la~~s~~~Yr 323 (494)
T PRK13655 291 EINEKLIAPPRILSEEDKEELLEIIEKYSERYQ 323 (494)
T ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 000000001123556788888877777766664
No 172
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=34.01 E-value=44 Score=39.97 Aligned_cols=57 Identities=26% Similarity=0.476 Sum_probs=36.5
Q ss_pred cchhHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHh-hhccCCCeeeecCC
Q 010415 167 NWSGYR---RLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVME-IGQNNPEIYFTDRE 226 (511)
Q Consensus 167 dWs~Y~---~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e-~g~~~PDI~ftDr~ 226 (511)
+|+=|+ +|.++++++|+|++. ||.+||.||--.--..-..+.+ .|..+-.|-+|-|.
T Consensus 581 ~w~l~~Aq~~L~~~~~~~gv~l~~---FhGrGGsv~RGGgp~~~ai~~qp~g~~~g~iR~TeQG 641 (911)
T PRK00009 581 NWALYRAQEALVELAEKHGVRLTL---FHGRGGTVGRGGGPAYAAILSQPPGSVKGRIRVTEQG 641 (911)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCCCChHHHHHHhCCCccccCceEEEeec
Confidence 688776 577788999999844 9999999987644111112222 13444456677665
No 173
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=33.81 E-value=59 Score=33.31 Aligned_cols=89 Identities=13% Similarity=0.046 Sum_probs=52.6
Q ss_pred CCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEE
Q 010415 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (511)
Q Consensus 108 ~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (511)
..+|+||-+-.|--+- .-...++.-|+.+|++|++.|+|.. +--...=.-..++++++++.||||.+
T Consensus 65 ~~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 65 SHGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp CTT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HcCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEee
Confidence 3568888777666442 1267899999999999999999853 22333445677899999999999855
Q ss_pred EEeeeccCCCCCCCccCCCChhHHhh
Q 010415 188 VMSFHECGGNVGDDVHIPLPQWVMEI 213 (511)
Q Consensus 188 VmsFHqCGGNVGD~~~IpLP~WV~e~ 213 (511)
=..-. +.+.....++..|+.++
T Consensus 132 EvG~K----~~~~~~~~~~~~~i~~~ 153 (244)
T PF02679_consen 132 EVGKK----DPESDFSLDPEELIEQA 153 (244)
T ss_dssp EES-S----SHHHHTT--CCHHHHHH
T ss_pred cccCC----CchhcccCCHHHHHHHH
Confidence 44411 11112223366787654
No 174
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=33.63 E-value=53 Score=33.61 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=35.0
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCC---CceecchhHHHHHHHHHHcCCcE
Q 010415 138 LKILKSINVDGVMVDCWWGIVEAHT---PQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 138 L~~LK~~GVdGV~vdvWWGiVE~~~---p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
+..++++|++|||+|-+ .+.+ -..+++....+.++.+|++||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 46779999999999976 3333 33566788888999999999998
No 175
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=32.69 E-value=1.2e+02 Score=28.84 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
.++-++.++++||+.|.+--+. +..++.+.+++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 5667788899999998743221 245678889999999 998888888
No 176
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=32.58 E-value=1.1e+02 Score=32.62 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=68.3
Q ss_pred cceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecch-----hHHHHHHHHHHcCCcEEEEEeeec
Q 010415 119 LGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHE 193 (511)
Q Consensus 119 Ld~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvVmsFHq 193 (511)
+-+|..-|.+.+++++..--+.||++|.+.+...+| +..-.-|.|. +|+-|.+.+++.||.+ +-..|.
T Consensus 94 ~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v--~tev~d 166 (335)
T PRK08673 94 PVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPI--VTEVMD 166 (335)
T ss_pred eEEEEecCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcE--EEeeCC
Confidence 334555688889999999999999999997766666 2222335555 4999999999999999 555441
Q ss_pred cCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCcccceee-eccCccccc--cCCc
Q 010415 194 CGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLT-WGIDKERVL--RGRT 248 (511)
Q Consensus 194 CGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lS-l~~D~~pvl--~GRT 248 (511)
. .--..+. +.-|++-.=-.=-+|.+.|. .+-=..||+ +|..
T Consensus 167 -------~---~~~~~l~----~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~ 210 (335)
T PRK08673 167 -------P---RDVELVA----EYVDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMS 210 (335)
T ss_pred -------H---HHHHHHH----HhCCeEEECcccccCHHHHHHHHcCCCcEEEeCCCC
Confidence 1 1122222 23455554443344445444 333356775 5544
No 177
>PRK06233 hypothetical protein; Provisional
Probab=32.47 E-value=89 Score=33.19 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeee-ecCC---CceecchhHHH-------HHHHHHHcCCcEEEEEeeeccCCCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIV-EAHT---PQVYNWSGYRR-------LFQIVRELELKLQVVMSFHECGGNV 198 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiV-E~~~---p~~YdWs~Y~~-------l~~mvr~~GLKvqvVmsFHqCGGNV 198 (511)
.+++++.+++|.++|++.|-+|.= |+.. +... ..--.+..|.+ +++.+-+ |+.--..+++|-|-||-
T Consensus 170 A~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~-~~p~d~~i~~H~C~Gn~ 248 (372)
T PRK06233 170 AQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALA-DLPEDLTVTTHICRGNF 248 (372)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCcCCEEEEEeeCCCC
Confidence 467888899999999999999986 7642 2100 01012333332 3332332 55333467999999886
Q ss_pred CCCccCCC--ChhHHhhhccCCCeeeecCCCCccc--ceee-ecc---Cccc---cccCCchhHHHHHHHHHHHHHHhhh
Q 010415 199 GDDVHIPL--PQWVMEIGQNNPEIYFTDREGRRNS--ECLT-WGI---DKER---VLRGRTAVEVYFDYMRSFRVEFNEF 267 (511)
Q Consensus 199 GD~~~IpL--P~WV~e~g~~~PDI~ftDr~G~rn~--E~lS-l~~---D~~p---vl~GRTpi~~Y~dfm~SF~~~f~~~ 267 (511)
..+...+- -.=.-...+.+-|.|+-+=...|.. |.|. ++. ++.= |+.-++|.=.-.|.++.=..+..++
T Consensus 249 ~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~ 328 (372)
T PRK06233 249 KSTYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARIDEATEY 328 (372)
T ss_pred CCcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHh
Confidence 53211110 0001112355667777654433322 3332 111 2111 2344666544445555555555555
Q ss_pred hc
Q 010415 268 FV 269 (511)
Q Consensus 268 ~g 269 (511)
++
T Consensus 329 v~ 330 (372)
T PRK06233 329 VP 330 (372)
T ss_pred CC
Confidence 43
No 178
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=32.44 E-value=1.7e+02 Score=29.46 Aligned_cols=60 Identities=23% Similarity=0.160 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHHHHHHH-cCCcEEEEEeeeccCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRE-LELKLQVVMSFHECGG 196 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~-~GLKvqvVmsFHqCGG 196 (511)
.+.....+++|+++|++.|.+|.= |+..-. + ..++....+++.+.+.+ .|-++ ..|-||+
T Consensus 150 ~~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~~----~lHic~~ 211 (321)
T cd03310 150 AEFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGDV----EVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCce----EEEECCC
Confidence 356778889999999999999974 655432 2 45788888889988876 33332 4589986
No 179
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=32.26 E-value=99 Score=30.22 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeec
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHq 193 (511)
+.+++.+.+++||+ ++|.|.+-.=||.=....| ...-+++++-+-+.|..+ |++=|.
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~Dv--IiG~H~ 214 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADV--VIGHHP 214 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCE--EEcCCC
Confidence 46789999999998 7999999999997332222 223356666666689888 988663
No 180
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=32.24 E-value=4.5e+02 Score=25.48 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=38.3
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeecc
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHEC 194 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqC 194 (511)
+..++|+.||+.|.+=. .|+ ..|-=..|.+-.+-|+++||++=+.-=|+.|
T Consensus 21 Dw~~v~~~gi~Fv~iKA----TEG---~~~~D~~f~~n~~~A~~~Gl~vGaYHf~~~~ 71 (190)
T cd06419 21 DFNSLQSNGISFVYLRA----TQG---ASYFDDNFLSNFSRAQGTGLSVGVIHTFSFS 71 (190)
T ss_pred CHHHHHhCCCeEEEEEe----ecC---CCccChhHHHHHHHHHHCCCCEEEEEEeecC
Confidence 34566788999999964 343 4577788999999999999999666445544
No 181
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=32.13 E-value=81 Score=30.41 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
...++.-|+..+++|.+||.+.. +.... .+..-.+++-+..+++||++
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~------~~~~~~~~l~~~l~~~gl~i 61 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFP------ADYKELAELKELLADYGLEI 61 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCC------chhhhHHHHHHHHHHcCcEE
Confidence 46788999999999999999877 22222 12223899999999999998
No 182
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=31.83 E-value=80 Score=32.02 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=43.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeec------CCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChh
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEA------HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~------~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~W 209 (511)
++++..+++|++.|.+-+= .=|. ...-...+.-+.++++.+++.|++|.+.+. +..-..|..
T Consensus 75 ~di~~a~~~g~~~i~i~~~--~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e----------da~r~~~~~ 142 (262)
T cd07948 75 DDARIAVETGVDGVDLVFG--TSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE----------DSFRSDLVD 142 (262)
T ss_pred HHHHHHHHcCcCEEEEEEe--cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----------eeCCCCHHH
Confidence 3577778889998887541 1110 012234577788999999999999988776 222223777
Q ss_pred HHhh
Q 010415 210 VMEI 213 (511)
Q Consensus 210 V~e~ 213 (511)
|.+.
T Consensus 143 l~~~ 146 (262)
T cd07948 143 LLRV 146 (262)
T ss_pred HHHH
Confidence 7654
No 183
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=31.72 E-value=2.4e+02 Score=29.02 Aligned_cols=84 Identities=13% Similarity=0.170 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceec------chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCC-
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN------WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLP- 207 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd------Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP- 207 (511)
.+++++..++|++.|.+-+ +.=|...-.+++ +.-+.+++++++++||++++.+ .|....++.
T Consensus 77 ~~die~A~~~g~~~v~i~~--s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---------ed~~r~d~~~ 145 (279)
T cd07947 77 KEDLKLVKEMGLKETGILM--SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---------EDITRADIYG 145 (279)
T ss_pred HHHHHHHHHcCcCEEEEEE--cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---------EcccCCCccc
Confidence 3556666678999888744 333333233443 4458888999999999997666 233333333
Q ss_pred ---hhHHhhhc----cCCC--eeeecCCCCc
Q 010415 208 ---QWVMEIGQ----NNPE--IYFTDREGRR 229 (511)
Q Consensus 208 ---~WV~e~g~----~~PD--I~ftDr~G~r 229 (511)
.|+.+..+ .-.| |-+.|--|.-
T Consensus 146 ~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a 176 (279)
T cd07947 146 FVLPFVNKLMKLSKESGIPVKIRLCDTLGYG 176 (279)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEeccCCCcC
Confidence 57776544 2233 3355555544
No 184
>PRK12677 xylose isomerase; Provisional
Probab=31.58 E-value=1e+02 Score=33.04 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCcceEEEee---e-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 132 EILVNQLKILKSINVDGVMVDC---W-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdv---W-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
-.++.-+++++++|+++|++.. | |+.-+. ..+ ...+++-++++++||+|-.|
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v~~v 86 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVVPMV 86 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCeeEEE
Confidence 3478889999999999998831 2 322211 011 24788999999999998433
No 185
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=31.48 E-value=3e+02 Score=27.38 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc----hhHHHHHHHHHHcCC
Q 010415 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW----SGYRRLFQIVRELEL 183 (511)
Q Consensus 108 ~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW----s~Y~~l~~mvr~~GL 183 (511)
...+||+|..--... +...+..+..+++|+|+|++ .|--|.= .-++.+-+++...++
T Consensus 64 ~~~~~vi~gv~~~~~---------~~~i~~a~~a~~~Gad~v~v----------~pP~y~~~~~~~~~~~~~~ia~~~~~ 124 (281)
T cd00408 64 AGRVPVIAGVGANST---------REAIELARHAEEAGADGVLV----------VPPYYNKPSQEGIVAHFKAVADASDL 124 (281)
T ss_pred CCCCeEEEecCCccH---------HHHHHHHHHHHHcCCCEEEE----------CCCcCCCCCHHHHHHHHHHHHhcCCC
Q ss_pred cEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCC-eeeecCCCCccc--ceeeeccCccccccC
Q 010415 184 KLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPE-IYFTDREGRRNS--ECLTWGIDKERVLRG 246 (511)
Q Consensus 184 KvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ftDr~G~rn~--E~lSl~~D~~pvl~G 246 (511)
.+ ++- |.-....+.|+.-+...-.++|. +-++|..|.... +++...-++..|+.|
T Consensus 125 pi--~iY------n~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G 182 (281)
T cd00408 125 PV--ILY------NIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDRLTRLIALLGPDFAVLSG 182 (281)
T ss_pred CE--EEE------ECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEc
No 186
>PRK02227 hypothetical protein; Provisional
Probab=31.31 E-value=64 Score=33.07 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=36.7
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCC---CceecchhHHHHHHHHHHcCCcE
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHT---PQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~---p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
.-+..++++|++|+|+|-+ ++.+ -..+++.-..+.++++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4567889999999999965 3323 23567888899999999999998
No 187
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=31.18 E-value=91 Score=33.12 Aligned_cols=68 Identities=13% Similarity=0.225 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeee-ecC-----CCceec----chhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIV-EAH-----TPQVYN----WSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiV-E~~-----~p~~Yd----Ws~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVG 199 (511)
.+++++.+++|.++|++.|-+|.= |+.. ... +....+ =..|.++++.+-+ |+.--..+++|-|-||-.
T Consensus 169 A~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~-~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 169 AKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALA-GKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEeecCCCC
Confidence 567888899999999999999987 7652 110 001111 1234455555443 664444789999998965
No 188
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=31.07 E-value=1.4e+02 Score=29.34 Aligned_cols=52 Identities=21% Similarity=-0.018 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHc-CCcE
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL-ELKL 185 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~-GLKv 185 (511)
..|+..|+.+|++|+++|.+.+=+..-.. .+. .+=...+++.++++++ |+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~i 62 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL-SRP-LKKERAEKFKAIAEEGPSICL 62 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC-CCC-CCHHHHHHHHHHHHHcCCCcE
Confidence 57889999999999999998763210000 000 0115788899999999 7765
No 189
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=31.01 E-value=2.6e+02 Score=29.08 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=55.6
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecchh-----HHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010415 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWSG-----YRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~G--VdGV~vdvWWGiVE~~~p~~YdWs~-----Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD 200 (511)
..+.+.+.+-++.+++.| +|+|.+|.=|.. +-+.|+|+- -+++++-.++.|+|+.+++ |-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~--~P------- 86 (339)
T cd06604 20 YYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKVVTII--DP------- 86 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEEEEEE--eC-------
Confidence 346788889999998876 588999966541 233455543 5799999999999994443 32
Q ss_pred CccCCC-C-hhHHhhhccCCCeeeecCCCC
Q 010415 201 DVHIPL-P-QWVMEIGQNNPEIYFTDREGR 228 (511)
Q Consensus 201 ~~~IpL-P-~WV~e~g~~~PDI~ftDr~G~ 228 (511)
.|.. | .-+-+++.+ .+.|.++.+|.
T Consensus 87 --~v~~~~~~~~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 87 --GVKVDPGYDVYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred --ceeCCCCChHHHHHHH-CCeEEECCCCC
Confidence 2211 1 123344433 48899998885
No 190
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=30.74 E-value=1e+02 Score=29.42 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELE 182 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~G 182 (511)
|++++++.++.||..||+.|.|--=|+.+-+. -=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 68999999999999999999998888887763 3356777777765
No 191
>PRK03195 hypothetical protein; Provisional
Probab=30.70 E-value=85 Score=30.94 Aligned_cols=47 Identities=17% Similarity=0.414 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCceEEEEEeecccCcccCCCCCCCCCC-CccCCCcc
Q 010415 251 EVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGE 304 (511)
Q Consensus 251 ~~Y~dfm~SF~~~f~~~~g~~~I~eI~VGLGPaGELRYPSyp~~~G-W~~PGiGE 304 (511)
+.-+=......+.++.++|.++|++|-| +||.+ ||. .+| |+.+|.|-
T Consensus 134 teL~~~k~~Ii~rLN~~lG~~vV~~I~i-~GP~~----psw--~~g~~~v~grGp 181 (186)
T PRK03195 134 TQLRMMQAQLLAKIAAAVGDGVVTSLKI-TGPAA----PSW--RKGPRHIAGRGP 181 (186)
T ss_pred HHHHhhHHHHHHHHHHHhCccceeEEEE-eCCCC----CCC--CcCCCcCCCCCC
Confidence 4444455678889999999999999998 67774 343 345 88888873
No 192
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=30.70 E-value=1.5e+02 Score=23.22 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
.++.-++++|+.|++.|-+ .+-. +..++.++.+.+++.|+++
T Consensus 16 ~~~~~~~~a~~~g~~~v~i------TDh~-----~~~~~~~~~~~~~~~gi~~ 57 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI------TDHG-----NLFGAVEFYKAAKKAGIKP 57 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE------eeCC-----cccCHHHHHHHHHHcCCeE
Confidence 4667889999999999965 3321 5677889999999999988
No 193
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=30.69 E-value=37 Score=32.74 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=20.9
Q ss_pred ecCCCCcccceee-eccCccccccCCchh
Q 010415 223 TDREGRRNSECLT-WGIDKERVLRGRTAV 250 (511)
Q Consensus 223 tDr~G~rn~E~lS-l~~D~~pvl~GRTpi 250 (511)
...+.+-+.|.++ |++|+.+-++|||.+
T Consensus 107 v~vd~k~~~~~l~WL~~~d~~sidg~tvl 135 (153)
T PRK09993 107 STIDEKTSQEKLTWLNVNDALSIDGKTVL 135 (153)
T ss_pred EEcCCCcChhheeeecCCCCcccccceee
Confidence 4444555568888 488888899999986
No 194
>PRK00957 methionine synthase; Provisional
Probab=30.63 E-value=1.9e+02 Score=29.46 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChh
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~W 209 (511)
.+++...+++|+++|++.|.+|.= |+. +-.++....+.++.+.+ ++++ ....|-|| |. -|-|
T Consensus 143 a~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~--~v~lH~CG-~~-------~~i~ 205 (305)
T PRK00957 143 ARALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNV--PVAMHVCG-DV-------SNII 205 (305)
T ss_pred HHHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCC--ceEEEECC-Cc-------HHHH
Confidence 356778888999999999999964 654 12234455555554443 3344 34579995 22 1212
Q ss_pred HHhhhccCCCeeeecCCCCc
Q 010415 210 VMEIGQNNPEIYFTDREGRR 229 (511)
Q Consensus 210 V~e~g~~~PDI~ftDr~G~r 229 (511)
-...+.+-|.++-|-.|.+
T Consensus 206 -~~l~~~~vd~i~ld~~~~~ 224 (305)
T PRK00957 206 -DDLLKFNVDILDHEFASNK 224 (305)
T ss_pred -HHHHhCCCCEEEEeecCCC
Confidence 2233567788888876654
No 195
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=30.27 E-value=1e+02 Score=30.18 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCcCCCcchHHHHHHhcCCCCC
Q 010415 374 PIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLND 453 (511)
Q Consensus 374 ~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~d~~~y~qI~~~a~~~~~ 453 (511)
.+.+.++++|..+.+.++...|-... ...+|+..+.+|+..+..-.|-|.=.+.. ...++..+|++.++.
T Consensus 143 ~~~~~l~~~Gy~~v~w~v~~~Dw~~~-----~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~--- 212 (224)
T TIGR02884 143 RTLAYTKELGYYTVFWSLAFKDWKVD-----EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKE--- 212 (224)
T ss_pred HHHHHHHHcCCcEEeccccCcccCCC-----CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHH---
Confidence 47888999999999998876655321 12457888899987766544555543321 134688999988764
Q ss_pred CCCCcceeeEEeeCCcc
Q 010415 454 PDGRHLSAFTYLRLSPV 470 (511)
Q Consensus 454 ~~~~~~~~FTylRm~~~ 470 (511)
.+|+|.++++.
T Consensus 213 ------~Gy~fvtl~el 223 (224)
T TIGR02884 213 ------QGYTFKSLDDL 223 (224)
T ss_pred ------CCCEEEEhHHc
Confidence 45788877654
No 196
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=30.13 E-value=1.2e+02 Score=33.45 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEee
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsF 191 (511)
.+.++.++++..++||+.|.+-.--.-++ -.++.+++++++|+++++.+|+
T Consensus 95 ddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 95 DDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 45678889999999999988776433331 3888999999999999988873
No 197
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=30.05 E-value=1.4e+02 Score=27.65 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=39.2
Q ss_pred CCccEEEeeccceeeCCC-cccC---hHHHHHH-HHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHc
Q 010415 109 PYVPVYVMLPLGIIDMNC-ELVD---PEILVNQ-LKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL 181 (511)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~-~~~~---~~~~~~~-L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~ 181 (511)
++++|.+++--..-+... -+.+ .+++.+. ++.+++.|.|||.+|.-|...+.. -++..|.++++..|+.
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSA 136 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHH
Confidence 567776666433211100 0222 3444444 456688999999999655433321 2467777777777764
No 198
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=29.95 E-value=52 Score=33.89 Aligned_cols=74 Identities=27% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHc-CcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcC
Q 010415 104 DFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSI-NVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELE 182 (511)
Q Consensus 104 ~~~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~-GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~G 182 (511)
+++...+-..-||-||.--+..++.++++.+...||+||-+ --.|+. |+|||-+=..-.-.---+.++.|+++|
T Consensus 90 ~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~-----GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 90 DYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT-----GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred HHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc-----ccccccCchhhhhhhHHHHHHHHHHhC
No 199
>PLN03231 putative alpha-galactosidase; Provisional
Probab=29.88 E-value=98 Score=33.35 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=42.4
Q ss_pred cChHHHHHHH----HHHHHcCcceEEEeeeeeeeec----------------CCCceec-----ch------hHHHHHHH
Q 010415 129 VDPEILVNQL----KILKSINVDGVMVDCWWGIVEA----------------HTPQVYN-----WS------GYRRLFQI 177 (511)
Q Consensus 129 ~~~~~~~~~L----~~LK~~GVdGV~vdvWWGiVE~----------------~~p~~Yd-----Ws------~Y~~l~~m 177 (511)
++++.+.+.. +-||.+|-+-|.||.-|-.-++ .+-|+.- |- |.+.|++.
T Consensus 15 i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADy 94 (357)
T PLN03231 15 ISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAK 94 (357)
T ss_pred cCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHH
Confidence 3555555444 3688999999999977754321 1122222 22 89999999
Q ss_pred HHHcCCcEEEEEeeeccCC
Q 010415 178 VRELELKLQVVMSFHECGG 196 (511)
Q Consensus 178 vr~~GLKvqvVmsFHqCGG 196 (511)
|.+.|||+ ..|.+-|
T Consensus 95 vHs~GLKf----GIY~~~G 109 (357)
T PLN03231 95 VHALGLKL----GIHVMRG 109 (357)
T ss_pred HHhCCcce----EEEecCC
Confidence 99999998 4554443
No 200
>PLN02784 alpha-amylase
Probab=29.30 E-value=1.2e+02 Score=36.63 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---c----------hhHHHHHHHHHHcCCcEEEEEee-eccCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---W----------SGYRRLFQIVRELELKLQVVMSF-HECGG 196 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd---W----------s~Y~~l~~mvr~~GLKvqvVmsF-HqCGG 196 (511)
++.+...|..|+++||+.|-+.-=. +..++.-|+ + .-+++|++.++++|+||.+=+-+ |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~---~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPT---ESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCC---CCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 6899999999999999999887632 332333343 2 35899999999999999554444 77764
No 201
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=29.26 E-value=49 Score=33.72 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=24.7
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEeeeee
Q 010415 125 NCELVDPEILVNQLKILKSINVDGVMVDCWWG 156 (511)
Q Consensus 125 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWG 156 (511)
++++.-+..++.-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg 53 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecC
Confidence 356766777777777777 8999999999954
No 202
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.10 E-value=1e+02 Score=30.12 Aligned_cols=59 Identities=8% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc--hhHHHHHHHHHHcCCcEEEEEeee
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW--SGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW--s~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
+.++.-++..+.+|++.|.+.-+-..-+...+..+++ ..++++.+++++.|+++ .+=+|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l--~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML--AVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE--EEEec
Confidence 5678888899999999998632100011111111111 35788999999999988 66655
No 203
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=29.04 E-value=1.1e+02 Score=31.71 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
.++++.-|+.+|++|.+.|++.- +-=-.+=+.-.+|++++.+.|+++
T Consensus 89 ~~kvdeyl~e~~~lGfe~iEIS~--------G~i~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 89 QDKVDEYLNEAKELGFEAIEISN--------GTIPMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred cccHHHHHHHHHHcCccEEEecC--------CeeecchHHHHHHHHHHHhcccEE
Confidence 36889999999999999998752 333345678899999999999998
No 204
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.86 E-value=67 Score=34.26 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEE
Q 010415 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (511)
.+.+.|+.+++.|+++|..+. |.++-... .+.. -..++++.|+++||+|+|
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~-~~l~~~~~--~~~~-~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPI-WMLVDPDE--NGKI-VPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred cHHHHHHHHHhCCccEecCch-hhcccccc--cccc-CCHHHHHHHHHcCCEEEE
Confidence 355778999999999866543 33333212 2222 567899999999999954
No 205
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.75 E-value=3.2e+02 Score=28.57 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=62.7
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
..+|+-+|.=...|- ...+++=++.+|++|||||.|.=- | ...=+++.+.++++||+...+
T Consensus 93 ~~~Pivlm~Y~Npi~-------~~Gie~F~~~~~~~GvdGlivpDL--------P----~ee~~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 93 VKVPIVLMTYYNPIF-------NYGIEKFLRRAKEAGVDGLLVPDL--------P----PEESDELLKAAEKHGIDPIFL 153 (265)
T ss_pred CCCCEEEEEeccHHH-------HhhHHHHHHHHHHcCCCEEEeCCC--------C----hHHHHHHHHHHHHcCCcEEEE
Confidence 567888776555432 467888899999999999988521 1 122246778888999999766
Q ss_pred EeeeccCCCCCCCccCCCChhHHhhhc-cCCCeeeecCCCCccc
Q 010415 189 MSFHECGGNVGDDVHIPLPQWVMEIGQ-NNPEIYFTDREGRRNS 231 (511)
Q Consensus 189 msFHqCGGNVGD~~~IpLP~WV~e~g~-~~PDI~ftDr~G~rn~ 231 (511)
.+ ++ +-+.++-.+.+ +..-|+|..+.|..-.
T Consensus 154 va-----------Pt-t~~~rl~~i~~~a~GFiY~vs~~GvTG~ 185 (265)
T COG0159 154 VA-----------PT-TPDERLKKIAEAASGFIYYVSRMGVTGA 185 (265)
T ss_pred eC-----------CC-CCHHHHHHHHHhCCCcEEEEecccccCC
Confidence 65 11 23456655543 3356999999876544
No 206
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=28.65 E-value=1.5e+02 Score=31.33 Aligned_cols=93 Identities=15% Similarity=0.231 Sum_probs=63.1
Q ss_pred eeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010415 121 IIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (511)
Q Consensus 121 ~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD 200 (511)
+|...+.....+++++.++.|+..|.+.|--..=|...+.-+.- +=+--.+|-++..+-..|+ |||.= | |.
T Consensus 15 iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~--Il~~r--G---Gy 85 (313)
T COG1619 15 IIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKA--ILCVR--G---GY 85 (313)
T ss_pred EEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeE--EEEcc--c---CC
Confidence 34434444478999999999999998877666545444331111 1123456667777777777 99843 4 34
Q ss_pred CccCCCChhHHhhhccCCCeee
Q 010415 201 DVHIPLPQWVMEIGQNNPEIYF 222 (511)
Q Consensus 201 ~~~IpLP~WV~e~g~~~PDI~f 222 (511)
.++==||.|-.++.+++|-||+
T Consensus 86 gs~rlLp~ld~~~i~~~pKifi 107 (313)
T COG1619 86 GSNRLLPYLDYDLIRNHPKIFI 107 (313)
T ss_pred ChhhhhhhcchHHHhcCCceEE
Confidence 6777799999888899998875
No 207
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=28.60 E-value=1.1e+02 Score=34.00 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
.+.+.+..+.++++|...||+++.+| |++.+.|.+.+++.+|-|+.=-++|
T Consensus 225 ~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 225 MEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred HHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccc
Confidence 78999999999999999999996654 5667888888888876654433333
No 208
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=28.50 E-value=96 Score=36.57 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=41.8
Q ss_pred CcccChHHH-HHHHHHHHHcCcceEEEeeeeeeeecCCCceecc-----------------hhHHHHHHHHHHcCCcEEE
Q 010415 126 CELVDPEIL-VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW-----------------SGYRRLFQIVRELELKLQV 187 (511)
Q Consensus 126 ~~~~~~~~~-~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW-----------------s~Y~~l~~mvr~~GLKvqv 187 (511)
+.+..-+++ +..|..||++||+.|.+-= +.|. +....| ..+++|++.+.++||+|..
T Consensus 244 ~~~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~Vil 318 (758)
T PLN02447 244 PKVNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLM 318 (758)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 334444565 5679999999999998642 2232 111123 4489999999999999954
Q ss_pred EEee-ecc
Q 010415 188 VMSF-HEC 194 (511)
Q Consensus 188 VmsF-HqC 194 (511)
=+-+ |.+
T Consensus 319 DvV~nH~~ 326 (758)
T PLN02447 319 DVVHSHAS 326 (758)
T ss_pred Eecccccc
Confidence 4343 544
No 209
>PRK14566 triosephosphate isomerase; Provisional
Probab=28.44 E-value=91 Score=32.16 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=36.0
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHH----HHHHHHHcCCcEEEEEe
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRR----LFQIVRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~----l~~mvr~~GLKvqvVms 190 (511)
.-..||++|+++|.|. +++++-.+..=++ -++.+.++||+. |+|
T Consensus 87 S~~mL~d~G~~~viiG--------HSERR~~f~Etd~~v~~Kv~~al~~gl~p--IvC 134 (260)
T PRK14566 87 SGQMLKDAGCRYVIIG--------HSERRRMYGETSNIVAEKFAAAQKHGLTP--ILC 134 (260)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCCCCcCHHHHHHHHHHHHHCCCEE--EEE
Confidence 3567999999999996 6777777777777 677888999988 888
No 210
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=28.29 E-value=2.2e+02 Score=28.71 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=36.8
Q ss_pred CCccc-ChHHHHHHHHHHH-HcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 125 NCELV-DPEILVNQLKILK-SINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 125 ~~~~~-~~~~~~~~L~~LK-~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
+|... +.+...+-|+.+- ..+||-|-|..... .+-...+++++.+++.|.|| |+|+|
T Consensus 75 GG~~~~~~~~~~~ll~~~~~~~~~d~vDiE~~~~---------~~~~~~~~l~~~~~~~~~~v--I~S~H 133 (238)
T PRK13575 75 GGYGQFTNDLYLNLLSDLANINGIDMIDIEWQAD---------IDIEKHQRLITHLQQYNKEV--VISHH 133 (238)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEEcccC---------CChHHHHHHHHHHHHcCCEE--EEecC
Confidence 44433 3444444455444 45689988875431 12345788889999999887 99999
No 211
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.19 E-value=1.8e+02 Score=29.97 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=67.5
Q ss_pred CCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 010415 124 MNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVH 203 (511)
Q Consensus 124 ~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~ 203 (511)
-=|.+..++++..--+.+|++|+.-+.-..|==..=+.+-+-....+++.|.+.+++.||.+ +-..|
T Consensus 21 GPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~--~Tev~----------- 87 (250)
T PRK13397 21 GPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLS--VSEIM----------- 87 (250)
T ss_pred ccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCE--EEeeC-----------
Confidence 34777888999888899999999999998885111111111223468999999999999999 55544
Q ss_pred CCCChhHHhhhccCCCeeeecCCCCcccceee-eccCccccc
Q 010415 204 IPLPQWVMEIGQNNPEIYFTDREGRRNSECLT-WGIDKERVL 244 (511)
Q Consensus 204 IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lS-l~~D~~pvl 244 (511)
=|.-+....+ +.|++-.=-.=-+|.+.|- .+--..||+
T Consensus 88 --d~~~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgkPVi 126 (250)
T PRK13397 88 --SERQLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDKPIL 126 (250)
T ss_pred --CHHHHHHHHh-cCCEEEECcccccCHHHHHHHHccCCeEE
Confidence 2333333333 5676655554455555554 344456765
No 212
>PRK12568 glycogen branching enzyme; Provisional
Probab=28.05 E-value=1.4e+02 Score=35.23 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=40.7
Q ss_pred ccChHHHHHH-HHHHHHcCcceEEEeeeeeeeecCCCceecc-----------------hhHHHHHHHHHHcCCcEEEEE
Q 010415 128 LVDPEILVNQ-LKILKSINVDGVMVDCWWGIVEAHTPQVYNW-----------------SGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 128 ~~~~~~~~~~-L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW-----------------s~Y~~l~~mvr~~GLKvqvVm 189 (511)
..+.+.+... |..||++||+.|.+-= +.|. |...+| ..++++++.+.++||+|..=+
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmP---i~e~--~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLP---ITEH--PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECc---cccC--CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4466777777 5999999999997632 1221 222223 358999999999999995444
Q ss_pred ee
Q 010415 190 SF 191 (511)
Q Consensus 190 sF 191 (511)
-+
T Consensus 340 V~ 341 (730)
T PRK12568 340 VS 341 (730)
T ss_pred cc
Confidence 44
No 213
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=28.04 E-value=66 Score=32.97 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 135 VNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
..|+++.|+.|+|.|++--= ++.--..+..+-.++-|.+.++.+++.||+|
T Consensus 134 ~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~V 185 (237)
T TIGR00559 134 KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKV 185 (237)
T ss_pred HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEE
Confidence 57788899999999998543 3322122233456899999999999999999
No 214
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=27.99 E-value=95 Score=32.63 Aligned_cols=61 Identities=21% Similarity=0.108 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVG 199 (511)
.++++..+++|.++|++-|-+|.= |+..=. . .=+.|.++++.+-+ |++.. .+.|-|-||-+
T Consensus 155 A~al~~Ei~~L~~aG~~~IQiDeP~l~~~~~----~-~~~~~v~~~n~~~~-g~~~~--v~~HvC~G~~~ 216 (339)
T PRK09121 155 AKILNQEAKELEAAGVDIIQFDEPAFNVFFD----E-VNDWGVAALERAIE-GLKCE--TAVHICYGYGI 216 (339)
T ss_pred HHHHHHHHHHHHHCCCCEEEecccHHhhhhH----H-HHHHHHHHHHHHHc-CCCCc--eEEEEeCCCCC
Confidence 467788899999999999999976 763210 0 14566666666664 67764 44599988864
No 215
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=27.90 E-value=73 Score=33.74 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeee--------------------e-e--eeecCCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 132 EILVNQLKILKSINVDGVMVDCW--------------------W-G--IVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvW--------------------W-G--iVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
+.-.+-+++.|++|+|.|-+--| | | +.|--..-.+.|.+|++|++.+++.||.+
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~--- 92 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEF--- 92 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcE---
Confidence 45555567778999999976433 1 1 01101113356789999999999999998
Q ss_pred EeeeccCCCCCCCccCCCChhHHhh-hccCCCeeeecCCCCccc-ceee-eccCccccc--cCCchhHHHHHHHHHHHH
Q 010415 189 MSFHECGGNVGDDVHIPLPQWVMEI-GQNNPEIYFTDREGRRNS-ECLT-WGIDKERVL--RGRTAVEVYFDYMRSFRV 262 (511)
Q Consensus 189 msFHqCGGNVGD~~~IpLP~WV~e~-g~~~PDI~ftDr~G~rn~-E~lS-l~~D~~pvl--~GRTpi~~Y~dfm~SF~~ 262 (511)
|| + |.=..=.+. .+-+.+ +|+=-++.-++ +.|. .+.-..||+ +|.+-++.-..-.+.|+.
T Consensus 93 ~s----------t---pfd~~svd~l~~~~v~-~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 93 LS----------T---PFDLESADFLEDLGVP-RFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRD 157 (329)
T ss_pred EE----------E---eCCHHHHHHHHhcCCC-EEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 33 1 111111111 122234 44444444333 4443 344456875 777766666666666653
No 216
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.90 E-value=62 Score=32.84 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=39.6
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeeee-eeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010415 126 CELVDPEILVNQLKILKSINVDGVMVDCWW-GIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (511)
Q Consensus 126 ~~~~~~~~~~~~L~~LK~~GVdGV~vdvWW-GiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVG 199 (511)
..+.+...++ +.++.-++|+|.+|+=| |-+ +..+++++||+++|+++ +++-| |.+++|
T Consensus 235 E~~~~~~~~~---~~~~~~~~d~v~~~~~~~GGi----------~~~~~~~~~a~~~gi~~--~~~~~-~~~~i~ 293 (316)
T cd03319 235 ESCFSAADAA---RLAGGGAYDGINIKLMKTGGL----------TEALRIADLARAAGLKV--MVGCM-VESSLS 293 (316)
T ss_pred CCCCCHHHHH---HHHhcCCCCEEEEeccccCCH----------HHHHHHHHHHHHcCCCE--EEECc-hhhHHH
Confidence 3444554444 45677899999999763 322 34689999999999999 66544 355554
No 217
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=27.88 E-value=7.3e+02 Score=26.06 Aligned_cols=131 Identities=14% Similarity=0.271 Sum_probs=77.9
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEee----eeeee--------ec--------CCCceecchhHHHHHHHHHHcCCc
Q 010415 125 NCELVDPEILVNQLKILKSINVDGVMVDC----WWGIV--------EA--------HTPQVYNWSGYRRLFQIVRELELK 184 (511)
Q Consensus 125 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdv----WWGiV--------E~--------~~p~~YdWs~Y~~l~~mvr~~GLK 184 (511)
...+...+.|++.+..|...+.+..++-. -|-+- +. ...+.|.=+-+++|++.|++.|+.
T Consensus 11 aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 11 ARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred cCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 34567889999999999999988776543 24321 11 122567888899999999999999
Q ss_pred EEEEEee-------------eccCCC---------CC-CCccCCCCh---hHHhhhccCCCeeeecCCCCcccceeeecc
Q 010415 185 LQVVMSF-------------HECGGN---------VG-DDVHIPLPQ---WVMEIGQNNPEIYFTDREGRRNSECLTWGI 238 (511)
Q Consensus 185 vqvVmsF-------------HqCGGN---------VG-D~~~IpLP~---WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~ 238 (511)
|.|-+-+ ..|.+. ++ ++-++.-|. .|.++-+.-=++| ...++-+|.
T Consensus 91 vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f--------~~~~iHiGg 162 (329)
T cd06568 91 VVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALT--------PGPYIHIGG 162 (329)
T ss_pred EEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhC--------CCCeEEEec
Confidence 9665431 112110 00 011222221 1111100000111 237899999
Q ss_pred CccccccCCchhHHHHHHHHHHHHHHhhh
Q 010415 239 DKERVLRGRTAVEVYFDYMRSFRVEFNEF 267 (511)
Q Consensus 239 D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~ 267 (511)
|+.+. +..+.|..|+....+.+.+.
T Consensus 163 DE~~~----~~~~~~~~f~~~~~~~v~~~ 187 (329)
T cd06568 163 DEAHS----TPHDDYAYFVNRVRAIVAKY 187 (329)
T ss_pred ccCCC----CchHHHHHHHHHHHHHHHHC
Confidence 99864 45678888888877777654
No 218
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=27.79 E-value=58 Score=29.48 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeee-eeeec---CCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWW-GIVEA---HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN 197 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWW-GiVE~---~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGN 197 (511)
.+.++..++..+.+|+..|.+...+ ..-.. +..-..--..++++.++++++|+++ +++-+.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i----~lE~~~~~ 136 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI----ALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE----EEE-SSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE----EEecccCc
Confidence 5788899999999999999988553 11111 0111222347788999999999665 44544433
No 219
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.54 E-value=1.8e+02 Score=29.49 Aligned_cols=50 Identities=4% Similarity=-0.031 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
.+..+.++++..+.|++.|.+-+-.. +.+--.+.++.+++.|+++++-++
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~~~~----------~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFDALN----------DVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeecCC----------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45678899999999999988854322 256788899999999999876444
No 220
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.53 E-value=1.3e+02 Score=26.62 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=32.0
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcE
Q 010415 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (511)
..+++....-|+.++++|+.+|-+-- + +.=.++.++++++|+++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~~----------g----~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQP----------G----AESEELIEAAREAGIRV 105 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE-T----------T----S--HHHHHHHHHTT-EE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEEc----------c----hHHHHHHHHHHHcCCEE
Confidence 46889999999999999999875521 2 56689999999999998
No 221
>PLN02417 dihydrodipicolinate synthase
Probab=27.47 E-value=2.7e+02 Score=28.27 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc--hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW--SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW--s~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpL 206 (511)
.+.+..-...++.+++|+|+|++ ..|--|.. .+..+.|+-+.++. +|+=++-=+ ...+.|
T Consensus 80 ~~t~~~i~~a~~a~~~Gadav~~---------~~P~y~~~~~~~i~~~f~~va~~~----pi~lYn~P~-----~tg~~l 141 (280)
T PLN02417 80 NSTREAIHATEQGFAVGMHAALH---------INPYYGKTSQEGLIKHFETVLDMG----PTIIYNVPG-----RTGQDI 141 (280)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEE---------cCCccCCCCHHHHHHHHHHHHhhC----CEEEEEChh-----HhCcCC
Q ss_pred ChhHHhhhccCCC-eeeecCCCCcccceeeeccCccccccC
Q 010415 207 PQWVMEIGQNNPE-IYFTDREGRRNSECLTWGIDKERVLRG 246 (511)
Q Consensus 207 P~WV~e~g~~~PD-I~ftDr~G~rn~E~lSl~~D~~pvl~G 246 (511)
+.-+.+.-.++|. +-++|.+|+ .....+-.|.+.||.|
T Consensus 142 ~~~~l~~l~~~pni~giKdss~~--~~~~~~~~~~~~v~~G 180 (280)
T PLN02417 142 PPEVIFKIAQHPNFAGVKECTGN--DRVKQYTEKGILLWSG 180 (280)
T ss_pred CHHHHHHHhcCCCEEEEEeCCCc--HHHHHHhcCCeEEEEc
No 222
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=27.03 E-value=1.7e+02 Score=30.14 Aligned_cols=87 Identities=14% Similarity=0.215 Sum_probs=57.2
Q ss_pred cChHHHHHHHHHHHHc--CcceEEEee-eeeeeecCCCceecch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010415 129 VDPEILVNQLKILKSI--NVDGVMVDC-WWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~--GVdGV~vdv-WWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD 200 (511)
.+.+.+.+-++.+++. -+|.|.+|. ||+ ..+-+.|+|+ --+++++-+++.|+||. +..|-. |.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~--~~i~P~---v~- 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAELM--ISIWPT---FG- 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEEE--EEecCC---cC-
Confidence 5778899999999887 679999996 553 2111266666 57889999999999994 443311 11
Q ss_pred CccCCCChhHHhhhccCCCeeeecCCCCcc
Q 010415 201 DVHIPLPQWVMEIGQNNPEIYFTDREGRRN 230 (511)
Q Consensus 201 ~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn 230 (511)
..-+. -+++++ .+.++++..|...
T Consensus 92 ---~~~~~--y~e~~~-~g~~v~~~~g~~~ 115 (319)
T cd06591 92 ---PETEN--YKEMDE-KGYLIKTDRGPRV 115 (319)
T ss_pred ---CCChh--HHHHHH-CCEEEEcCCCCee
Confidence 11122 233433 4889999888754
No 223
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.96 E-value=1.7e+02 Score=28.29 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc----hhHHHHHHHHHHcCCcEEEEEeee
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW----SGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW----s~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
+.+++-++..+.+|+..|. ++.|......+..=.| +..+++++++++.|+++ .+=.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~--~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l--~lE~~ 144 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVN--CLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTL--LIEPI 144 (254)
T ss_pred HHHHHHHHHHHHhCCCEEE--ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEE--EEEEC
Confidence 5677788889999999775 5666543211111113 45789999999999887 55544
No 224
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=26.94 E-value=55 Score=33.27 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=23.8
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEeeeee
Q 010415 125 NCELVDPEILVNQLKILKSINVDGVMVDCWWG 156 (511)
Q Consensus 125 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWG 156 (511)
++++..+..+++-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg 53 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecC
Confidence 356666677776666666 8999999999954
No 225
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=26.92 E-value=1.4e+02 Score=31.11 Aligned_cols=52 Identities=8% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCC-------ceecchhHHHHHHHHHHcCCc-EEEEEee
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELK-LQVVMSF 191 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p-------~~YdWs~Y~~l~~mvr~~GLK-vqvVmsF 191 (511)
+..|+.||++||+.|.+. ||.-.+ ...++.-+.+.+++++++|++ |.+-|-|
T Consensus 100 ~e~l~~l~~~Gv~risiG-----vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-----VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-----cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
No 226
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=26.86 E-value=57 Score=35.13 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=33.0
Q ss_pred HHHHHHHc-CcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 137 QLKILKSI-NVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~-GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
.|..+++. ||+||.....+--. ....+-...+++-+.++++||++.||=|
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEs 66 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIES 66 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 46778886 99999988865222 2344556678889999999999988766
No 227
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.70 E-value=3.3e+02 Score=27.44 Aligned_cols=113 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc---hhHHHHHHHHHHcCCc
Q 010415 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW---SGYRRLFQIVRELELK 184 (511)
Q Consensus 108 ~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW---s~Y~~l~~mvr~~GLK 184 (511)
...+||++..--..+ +..-+..+..+++|+|+|++ -.|--|.- .-|+-+-+++++.++.
T Consensus 65 ~~~~~vi~gv~~~s~---------~~~i~~a~~a~~~Gad~v~v---------~pP~y~~~~~~~i~~~~~~i~~~~~~p 126 (285)
T TIGR00674 65 NGRVPVIAGTGSNAT---------EEAISLTKFAEDVGADGFLV---------VTPYYNKPTQEGLYQHFKAIAEEVDLP 126 (285)
T ss_pred CCCCeEEEeCCCccH---------HHHHHHHHHHHHcCCCEEEE---------cCCcCCCCCHHHHHHHHHHHHhcCCCC
Q ss_pred EEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCe-eeecCCCCccc--ceeeeccCccccccC
Q 010415 185 LQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEI-YFTDREGRRNS--ECLTWGIDKERVLRG 246 (511)
Q Consensus 185 vqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI-~ftDr~G~rn~--E~lSl~~D~~pvl~G 246 (511)
| ++= |.-....++|+.-+.+.-.++|.| .++|-+|.... +++...-|+..||.|
T Consensus 127 i--~lY------n~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G 183 (285)
T TIGR00674 127 I--ILY------NVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLERISEIKAIAPDDFVVLSG 183 (285)
T ss_pred E--EEE------ECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEC
No 228
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=26.66 E-value=62 Score=31.16 Aligned_cols=36 Identities=39% Similarity=0.622 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHc--CCcE
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL--ELKL 185 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~--GLKv 185 (511)
+++++.|+.|+++|||||+|.-. -++.++++. +++|
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~~------------------g~~~~~k~~~~~~~i 39 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSNP------------------GLLELLKELGPDLKI 39 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcCH------------------HHHHHHHHhCCCCcE
Confidence 57899999999999999999632 356778888 5566
No 229
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=26.62 E-value=1.9e+02 Score=32.82 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=37.5
Q ss_pred cchhHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCC-ChhHHhhhccCCCee-eecCC
Q 010415 167 NWSGYR---RLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL-PQWVMEIGQNNPEIY-FTDRE 226 (511)
Q Consensus 167 dWs~Y~---~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpL-P~WV~e~g~~~PDI~-ftDr~ 226 (511)
.|+-|+ +|.++++++|++|.+ ||.+||.+|-- -+ |..+.++-...|..+ +|-|+
T Consensus 224 ~~al~~Aq~~L~e~~ee~gV~l~p---fhGrGgspfRG---Gg~P~n~a~il~qppG~~t~TeQs 282 (506)
T TIGR02751 224 VLSNKYALSRLYELSEETGISIYP---IIGAGSLPFRG---HLSPENIERVLDEYPGVYTFTVQS 282 (506)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---EeecCCCCcCC---CCChhhHHHHHhcCCCceEEeeec
Confidence 576665 567778999999866 68899998865 35 566555666777644 45444
No 230
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=26.47 E-value=7.6e+02 Score=25.99 Aligned_cols=117 Identities=12% Similarity=0.159 Sum_probs=75.1
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEee----eeeeeecC-----------CCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 126 CELVDPEILVNQLKILKSINVDGVMVDC----WWGIVEAH-----------TPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 126 ~~~~~~~~~~~~L~~LK~~GVdGV~vdv----WWGiVE~~-----------~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
..+...+.+++.+..|.....+-.++-. -|-+--+. ..+.|.=+-++++++.|++.|+.|.|
T Consensus 12 R~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIP--- 88 (348)
T cd06562 12 RHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIP--- 88 (348)
T ss_pred ccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEE---
Confidence 3566789999999999999988877532 24332110 13568889999999999999999944
Q ss_pred eeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCC------CcccceeeeccCccccccCCchhHHHHHHHHHHHHHH
Q 010415 191 FHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREG------RRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEF 264 (511)
Q Consensus 191 FHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G------~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f 264 (511)
.|-.|.=.....+.+|++....... ......|... .+.=.+|+.+.-+++
T Consensus 89 ------------EID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~------------~~~t~~fl~~vl~E~ 144 (348)
T cd06562 89 ------------EIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPT------------NPKTYDFLKTLFKEV 144 (348)
T ss_pred ------------eccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCC------------ChhHHHHHHHHHHHH
Confidence 4447765555556778776554321 1112223322 233345777777777
Q ss_pred hhhhc
Q 010415 265 NEFFV 269 (511)
Q Consensus 265 ~~~~g 269 (511)
.+.+.
T Consensus 145 ~~lF~ 149 (348)
T cd06562 145 SELFP 149 (348)
T ss_pred HHhcC
Confidence 77665
No 231
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=26.41 E-value=62 Score=31.74 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeee
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCW 154 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvW 154 (511)
|...+++++++|+++|++.+++||=
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiM 34 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIM 34 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeec
Confidence 6778999999999999999999985
No 232
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.38 E-value=7.3e+02 Score=26.12 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=74.3
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEee----eeeee--------ec-------------------CCCceecchhHHHH
Q 010415 126 CELVDPEILVNQLKILKSINVDGVMVDC----WWGIV--------EA-------------------HTPQVYNWSGYRRL 174 (511)
Q Consensus 126 ~~~~~~~~~~~~L~~LK~~GVdGV~vdv----WWGiV--------E~-------------------~~p~~YdWs~Y~~l 174 (511)
..+...+.+++.+..|...+++..++-. -|-+- |. ...+.|-=+-++++
T Consensus 12 R~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~ei 91 (357)
T cd06563 12 RHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREI 91 (357)
T ss_pred ccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHH
Confidence 4566789999999999999988877532 23221 11 01367889999999
Q ss_pred HHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCC------CCcccceeeeccCccccccCCc
Q 010415 175 FQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDRE------GRRNSECLTWGIDKERVLRGRT 248 (511)
Q Consensus 175 ~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~------G~rn~E~lSl~~D~~pvl~GRT 248 (511)
++.|++.|+.|.|- |-.|.=...+.+.+|++.-.... +......|...
T Consensus 92 v~yA~~rgI~VIPE---------------ID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~----------- 145 (357)
T cd06563 92 VAYAAERGITVIPE---------------IDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPG----------- 145 (357)
T ss_pred HHHHHHcCCEEEEe---------------cCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCC-----------
Confidence 99999999999544 55676444444678877654432 22223334433
Q ss_pred hhHHHHHHHHHHHHHHhhhhc
Q 010415 249 AVEVYFDYMRSFRVEFNEFFV 269 (511)
Q Consensus 249 pi~~Y~dfm~SF~~~f~~~~g 269 (511)
.+.=.+|+.+.-+++.+.+.
T Consensus 146 -~~~t~~f~~~ll~E~~~lF~ 165 (357)
T cd06563 146 -KPETYTFLEDVLDEVAELFP 165 (357)
T ss_pred -ChhHHHHHHHHHHHHHHhCC
Confidence 22233566666666666554
No 233
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=26.15 E-value=1.6e+02 Score=28.44 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecC------CCceecchhHHHHHHHHHHcCCcEEEEEe-eecc
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAH------TPQVYNWSGYRRLFQIVRELELKLQVVMS-FHEC 194 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~------~p~~YdWs~Y~~l~~mvr~~GLKvqvVms-FHqC 194 (511)
...++.++++|++.|.+-.=-. +.. ....-+++-..+.++.+++.|+++++.++ ...|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS--ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 6789999999999998877422 110 11223677888999999999999988884 4444
No 234
>PRK08005 epimerase; Validated
Probab=26.05 E-value=74 Score=31.65 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=32.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--cchhHHHHHHHHHH
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVRE 180 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y--dWs~Y~~l~~mvr~ 180 (511)
.|...++++|++|+++|+|-+++||= +|+| |.+-=-+.++.+|+
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvM--------DG~FVPN~tfG~~~i~~l~~ 55 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIE--------DTSFINNITFGMKTIQAVAQ 55 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecc--------CCCcCCccccCHHHHHHHHh
Confidence 36789999999999999999999983 5555 34433445555554
No 235
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=25.79 E-value=1.9e+02 Score=34.00 Aligned_cols=84 Identities=11% Similarity=0.170 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHH-HHHHHHHHc--CCcEEEEEeeeccCCCCCCCccCCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYR-RLFQIVREL--ELKLQVVMSFHECGGNVGDDVHIPL 206 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~-~l~~mvr~~--GLKvqvVmsFHqCGGNVGD~~~IpL 206 (511)
..+++..++.|.++|+.-|-+|+= |- |.-.-..=+|..|. ...+..+.. |++--.-+..|-|-||.++ +
T Consensus 574 a~a~~~ev~~L~~aG~~~IQIDEPaL~--~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~-----i 646 (750)
T TIGR01371 574 ALAIRDEVLDLEEAGIKIIQIDEPALR--EGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNE-----I 646 (750)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCchhh--hcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHH-----H
Confidence 456778889999999999999986 53 32111223555543 233444332 5531123489999998763 1
Q ss_pred ChhHHhhhccCCCeeeec
Q 010415 207 PQWVMEIGQNNPEIYFTD 224 (511)
Q Consensus 207 P~WV~e~g~~~PDI~ftD 224 (511)
=.++. +.+-|.+..|
T Consensus 647 ~~~l~---~l~vD~i~lE 661 (750)
T TIGR01371 647 IESIA---DLDADVISIE 661 (750)
T ss_pred HHHHH---hCCCCEEEEE
Confidence 13333 5666777766
No 236
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=25.79 E-value=1.9e+02 Score=28.07 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeec
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHq 193 (511)
+.+.+.+.+++||+. +|-|.+-.=||.-....| -+.-+++++.+-+.|..+ |++=|.
T Consensus 160 ~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p----~~~~~~la~~l~~~G~D~--IiG~H~ 216 (239)
T cd07381 160 DLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYP----TPEQRELARALIDAGADL--VIGHHP 216 (239)
T ss_pred CHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCC----CHHHHHHHHHHHHCCCCE--EEcCCC
Confidence 468899999999988 999999999997332222 223456666666789888 888663
No 237
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=25.78 E-value=5.9e+02 Score=26.00 Aligned_cols=129 Identities=18% Similarity=0.130 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHH------------------HHHHHHcCCcEEEEEee
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRL------------------FQIVRELELKLQVVMSF 191 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l------------------~~mvr~~GLKvqvVmsF 191 (511)
+++.+...++.+++.|+++|.+.+--- +++ ....|.-.+++ +..+.++|.+. +..
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~---~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~---I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLG---RRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADG---IVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCC---CCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCE---EEE
Confidence 567788888999999999988866421 121 11344332222 33344555554 233
Q ss_pred eccCCCCCCCccCCCChhHHhhhccCC-CeeeecCCCCccc----ceeeeccCccccccCCchhH--------HHHHHHH
Q 010415 192 HECGGNVGDDVHIPLPQWVMEIGQNNP-EIYFTDREGRRNS----ECLTWGIDKERVLRGRTAVE--------VYFDYMR 258 (511)
Q Consensus 192 HqCGGNVGD~~~IpLP~WV~e~g~~~P-DI~ftDr~G~rn~----E~lSl~~D~~pvl~GRTpi~--------~Y~dfm~ 258 (511)
|.+||-..|. .++-...+.++.+.-+ +|-..=.-|-++. ++|.+|+|-+ .-||--+. --.++++
T Consensus 200 ~~~gG~~~~~-g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V--~ig~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLDG-APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAV--LIGRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCCC-CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEE--EEcHHHHHHHHhcCHHHHHHHHH
Confidence 4456654432 2333334555543332 4555555666665 7888999864 33443332 2245777
Q ss_pred HHHHHHhhhh
Q 010415 259 SFRVEFNEFF 268 (511)
Q Consensus 259 SF~~~f~~~~ 268 (511)
.+++++...+
T Consensus 277 ~l~~el~~~m 286 (299)
T cd02809 277 ILRDELERAM 286 (299)
T ss_pred HHHHHHHHHH
Confidence 7777776655
No 238
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.56 E-value=85 Score=33.83 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=76.9
Q ss_pred cEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEee---------------------eeee--eecCCCceecc
Q 010415 112 PVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDC---------------------WWGI--VEAHTPQVYNW 168 (511)
Q Consensus 112 pvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdv---------------------WWGi--VE~~~p~~YdW 168 (511)
|+|+-+-++ +|.+|.+ +.=.+-+++.|++|+|.|-+-- ||+. -|--..-..+|
T Consensus 14 ~~~iIAEig-~NHnG~l---e~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~ 89 (347)
T COG2089 14 KPFIIAEIG-ANHNGDL---ERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPL 89 (347)
T ss_pred CcEEEeeec-ccccCcH---HHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCH
Confidence 445555554 3555655 3334457788999999998766 6553 12222345789
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCeeeecCCCCccc-ceee-eccCccccc--
Q 010415 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNS-ECLT-WGIDKERVL-- 244 (511)
Q Consensus 169 s~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~-E~lS-l~~D~~pvl-- 244 (511)
+|+.+|++.|++.|+-+ +| ++.= +.=|...-+-+|+ +|+=.+|--|. ..|. ++.-.-|+.
T Consensus 90 e~~~~Lke~a~~~Gi~~---~S----------SPfd--~~svd~l~~~~~~-ayKIaS~E~~~~plik~iA~~~kPiIlS 153 (347)
T COG2089 90 EWHAQLKEYARKRGIIF---FS----------SPFD--LTAVDLLESLNPP-AYKIASGEINDLPLIKYIAKKGKPIILS 153 (347)
T ss_pred HHHHHHHHHHHHcCeEE---Ee----------cCCC--HHHHHHHHhcCCC-eEEecCccccChHHHHHHHhcCCCEEEE
Confidence 99999999999999854 44 2110 1112222233333 55666666655 2222 222233553
Q ss_pred cCCchhHHHHHHHHHHHHHHh
Q 010415 245 RGRTAVEVYFDYMRSFRVEFN 265 (511)
Q Consensus 245 ~GRTpi~~Y~dfm~SF~~~f~ 265 (511)
.|.+-++.-.+-+.-||++=.
T Consensus 154 TGma~~~ei~~av~~~r~~g~ 174 (347)
T COG2089 154 TGMATIEEIEEAVAILRENGN 174 (347)
T ss_pred cccccHHHHHHHHHHHHhcCC
Confidence 666767777777777766533
No 239
>PTZ00333 triosephosphate isomerase; Provisional
Probab=25.52 E-value=1.5e+02 Score=30.43 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=35.4
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCCceecc----hhHHHHHHHHHHcCCcEEEEEe
Q 010415 138 LKILKSINVDGVMVDCWWGIVEAHTPQVYNW----SGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 138 L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW----s~Y~~l~~mvr~~GLKvqvVms 190 (511)
-..||++|+++|.|. +++++=.| .--.+-++.+.++||+. |+|
T Consensus 82 ~~mL~d~G~~~viiG--------HSERR~~f~Etd~~I~~Kv~~al~~gl~p--IlC 128 (255)
T PTZ00333 82 AEMLKDLGINWTILG--------HSERRQYFGETNEIVAQKVKNALENGLKV--ILC 128 (255)
T ss_pred HHHHHHcCCCEEEEC--------cccccCcCCCCcHHHHHHHHHHHHCCCEE--EEE
Confidence 478999999999996 67777777 66677777888999888 888
No 240
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=25.52 E-value=1.1e+02 Score=30.42 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=37.3
Q ss_pred hHHHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCc
Q 010415 372 YAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALP 434 (511)
Q Consensus 372 Y~~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~ 434 (511)
...+++.|-+.|+...++|+--.--+..- -...--++++..+...+++.||..+|||.--
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~---LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEf 182 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESF---LGRELDRELIEELPELNKKYGVDPCGEGGEF 182 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGG---TT-B--HHHHHHHHHHHHHH---TT-TTTTE
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHH---CCCCccHHHHHHHHHHHhhcCccccCCCeeE
Confidence 66778888889999999998543222110 0122236889999999999999999999754
No 241
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=25.48 E-value=1.8e+02 Score=26.36 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeee
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWG 156 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWG 156 (511)
..+......+.++++|+|+|++..-++
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~ 89 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIG 89 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHH
Confidence 357778888999999999999975543
No 242
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=25.34 E-value=1.9e+02 Score=28.26 Aligned_cols=56 Identities=5% Similarity=0.094 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeee-ecCCCceecchh----HHHHHHHHHHcCCcEEEEEeee
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIV-EAHTPQVYNWSG----YRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiV-E~~~p~~YdWs~----Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
+.+++-++..+.+|+..|.+ .||.. +...+.+ .|.. .+++.+++++.|+++ .+=.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~--~~g~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~Gv~l--~lE~~ 145 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINC--LVGKTPAGFSSEQ-IHATLVENLRYAANMLMKEDILL--LIEPI 145 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEE--CCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHcCCEE--EEEeC
Confidence 55788888899999998865 34432 1111122 1433 477888899999887 66554
No 243
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=25.16 E-value=1.5e+02 Score=31.42 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc----------eecchhHHHHHHHHHHcCCc-E
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ----------VYNWSGYRRLFQIVRELELK-L 185 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~----------~YdWs~Y~~l~~mvr~~GLK-v 185 (511)
..+++.||++||++|++.+ |...+. ..+|..-.+.++.++++|++ |
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 5667999999999999763 442222 45677777888999999996 6
No 244
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=25.13 E-value=1.6e+02 Score=29.35 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCcee------cchhHHHHHHHHHHcCCcEE
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVY------NWSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y------dWs~Y~~l~~mvr~~GLKvq 186 (511)
.++++..++.|++.|.+-+-.. |.....++ -+....++++.+++.|++++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVS--DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 3456777889999888876322 11111222 35778899999999999874
No 245
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=25.10 E-value=38 Score=34.64 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCcceEEEeee-eeeeecCCCceec--chhHHHHHHHHHHcCCcEE
Q 010415 135 VNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYN--WSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~Yd--Ws~Y~~l~~mvr~~GLKvq 186 (511)
..|+++.|++|+|.|++.-= |.-.......... ++-|.+.+..+++.||+|.
T Consensus 135 ~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~Vn 189 (239)
T PF03740_consen 135 PEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVN 189 (239)
T ss_dssp HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEe
Confidence 56788899999999999754 5544321122222 7999999999999999993
No 246
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=25.05 E-value=7.3e+02 Score=26.42 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=98.8
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeee--eeeeec----------CCCceecchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 128 LVDPEILVNQLKILKSINVDGVMVDCW--WGIVEA----------HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdvW--WGiVE~----------~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
..+++.+++-|+.+|+.|++.|.|||= +|.|== ..-..+ -.-.+++++.+++.|+-+.+=+....
T Consensus 9 a~~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~-i~D~~~l~~~l~e~gIY~IARIv~Fk-- 85 (316)
T PF13200_consen 9 AGSPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPY-IKDLKALVKKLKEHGIYPIARIVVFK-- 85 (316)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccccc-ccCHHHHHHHHHHCCCEEEEEEEEec--
Confidence 457789999999999999999999996 665521 111122 35678899999999999876443221
Q ss_pred CCCCCCccCCCChhHHhhhccCCCeeeecCCCCccc--ceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhcCceE
Q 010415 196 GNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNS--ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGII 273 (511)
Q Consensus 196 GNVGD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~--E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g~~~I 273 (511)
|+ .. .+++||..+....|..-. +-.+ |+|-- .+.-++|....+.+.+.. | +
T Consensus 86 ----D~-~l---------a~~~pe~av~~~~G~~w~d~~~~~-WvnP~--------~~evw~Y~i~IA~Eaa~~-G---F 138 (316)
T PF13200_consen 86 ----DP-VL---------AEAHPEWAVKTKDGSVWRDNEGEA-WVNPY--------SKEVWDYNIDIAKEAAKL-G---F 138 (316)
T ss_pred ----Ch-HH---------hhhChhhEEECCCCCcccCCCCCc-cCCCC--------CHHHHHHHHHHHHHHHHc-C---C
Confidence 32 11 245777777666664322 2222 44432 678899999999998865 5 6
Q ss_pred EEEEeecccCcccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHc
Q 010415 274 AEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEAR 323 (511)
Q Consensus 274 ~eI~VGLGPaGELRYPSyp~~~GW~~PGiGEFQCYDky~~~~lr~~a~~~ 323 (511)
.||+.= =+|||..-...+=.|+.- .-+-.=-.++.+|=+.|+++
T Consensus 139 dEIqfD-----YIRFP~~~~~~~l~y~~~-~~~~~r~~aI~~Fl~~a~~~ 182 (316)
T PF13200_consen 139 DEIQFD-----YIRFPDEGRLSGLDYSEN-DTEESRVDAITDFLAYAREE 182 (316)
T ss_pred CEEEee-----eeecCCCCcccccccCCC-CCcchHHHHHHHHHHHHHHH
Confidence 788763 468888332333344321 11111124456665555554
No 247
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.78 E-value=80 Score=31.24 Aligned_cols=46 Identities=20% Similarity=0.078 Sum_probs=36.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--cchhHHHHHHHHHHcC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVRELE 182 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y--dWs~Y~~l~~mvr~~G 182 (511)
.|+..++.+|++|+++|+|.+++|+ -+|+| |.+.=.+.++.+|+.+
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~Di--------mDg~fvpn~~~G~~~v~~lr~~~ 63 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDV--------MDGHFVPNLSFGPPVVKSLRKHL 63 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEec--------ccCccCCCcCcCHHHHHHHHhcC
Confidence 4678999999999999999999998 35666 4555567777777765
No 248
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=24.75 E-value=1.4e+02 Score=34.91 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=60.8
Q ss_pred CCCCCCC-CCCCccEEEeeccceeeCCCcccChHHHHHH--HHHHHHcCcceEEE-eeeeeeeecC---CCceecch---
Q 010415 100 LPERDFA-GTPYVPVYVMLPLGIIDMNCELVDPEILVNQ--LKILKSINVDGVMV-DCWWGIVEAH---TPQVYNWS--- 169 (511)
Q Consensus 100 ~~~~~~~-~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~--L~~LK~~GVdGV~v-dvWWGiVE~~---~p~~YdWs--- 169 (511)
.|=++|+ .++.||--.- |.+ .++... |..||++||..|++ +|..-.-|++ ..-.|+|-
T Consensus 177 ~HVr~fT~~~~~v~~~~r---------GTy---~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 177 AHVRDFTQLHPGVPEELR---------GTY---LGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred eeecccccCCCCCchhhc---------cce---ehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 5667777 7777773221 221 234444 99999999999985 7775555553 34678884
Q ss_pred ---------------------hHHHHHHHHHHcCCcEEEEEee-eccCCCCCCCccCCC
Q 010415 170 ---------------------GYRRLFQIVRELELKLQVVMSF-HECGGNVGDDVHIPL 206 (511)
Q Consensus 170 ---------------------~Y~~l~~mvr~~GLKvqvVmsF-HqCGGNVGD~~~IpL 206 (511)
.+|++++-+.++||-|.-=+=| |-+.||.- -++.++
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~-g~t~~f 302 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNEL-GPTLSF 302 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCc-Cccccc
Confidence 4778888888999998432223 87777633 334444
No 249
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.55 E-value=1.4e+02 Score=29.52 Aligned_cols=59 Identities=10% Similarity=0.269 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec--chhHHHHHHHHHHcCCcEEEEEeee
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN--WSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd--Ws~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
+.+++.++..+.+|+..|.+.-....-+...+..++ -+.+++++++++++|+++ .|=.|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l--~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTL--AVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEE--EEeeC
Confidence 458889999999999988653210001111111122 245678999999999987 55433
No 250
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.53 E-value=1.5e+02 Score=32.52 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=38.2
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCC-------ceecchhHHHHHHHHHHcCCcEEEE
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~p-------~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
..|+.||++|+..|.+. +|...+ +..+.+-+.+.+++++++|+++.+-
T Consensus 288 ell~~l~~aG~~~v~iG-----iES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 288 DILHLYRRAGLVHISLG-----TEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred HHHHHHHHhCCcEEEEc-----cccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 56789999999999886 465433 4567888999999999999987543
No 251
>PRK07329 hypothetical protein; Provisional
Probab=24.46 E-value=2e+02 Score=28.59 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=25.9
Q ss_pred hHHHHHHHHHcCcE-EEEeeccccccCCCCCCCCCCCChHHH---HHHHHHHHHhcCCe
Q 010415 372 YAPIAAMLKKHGVA-LNFTCVELRTVDQHEDFPEALADPEGL---VWQVLNAAWDVSIL 426 (511)
Q Consensus 372 Y~~Ia~mf~kh~~~-l~FTClEM~d~~~~~~~~~a~s~Pe~L---v~QV~~aA~~~Gv~ 426 (511)
|..+++++++.|+. +++. ||.+. |+.+ ..+..+.+++.|++
T Consensus 197 ~~~~l~~~~~~g~~~i~~g------SDAH~--------~~~vg~~~~~a~~~l~~~g~~ 241 (246)
T PRK07329 197 YRYAIELYKQLGGKLFSIG------SDAHK--------LEHYRYNFDDAQKLLKEHGIK 241 (246)
T ss_pred hHHHHHHHHHcCCeEEEec------CCCCC--------HHHHHHHHHHHHHHHHHcCCc
Confidence 57778888888874 6665 34443 5555 34456666676654
No 252
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=24.35 E-value=4.6e+02 Score=26.44 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc---hhHHHHHHHHHHcCCc
Q 010415 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW---SGYRRLFQIVRELELK 184 (511)
Q Consensus 108 ~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW---s~Y~~l~~mvr~~GLK 184 (511)
...+||++..--..+ +...+..+.++++|+|+|++ -.|--|.- .-++.+-+++...++.
T Consensus 68 ~~~~~vi~gv~~~~~---------~~~i~~a~~a~~~G~d~v~~---------~pP~~~~~~~~~i~~~~~~ia~~~~~p 129 (292)
T PRK03170 68 NGRVPVIAGTGSNST---------AEAIELTKFAEKAGADGALV---------VTPYYNKPTQEGLYQHFKAIAEATDLP 129 (292)
T ss_pred CCCCcEEeecCCchH---------HHHHHHHHHHHHcCCCEEEE---------CCCcCCCCCHHHHHHHHHHHHhcCCCC
Q ss_pred EEEEEeeeccCCCCCCCccCCCChhHHhhhccCCCe-eeecCCCCccc--ceeeeccCccccccC
Q 010415 185 LQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEI-YFTDREGRRNS--ECLTWGIDKERVLRG 246 (511)
Q Consensus 185 vqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI-~ftDr~G~rn~--E~lSl~~D~~pvl~G 246 (511)
| ++- |.-....+.|+.=+...-.++|.| .++|.+|.... +++...-|+..||.|
T Consensus 130 v--~lY------n~P~~~g~~l~~~~~~~L~~~p~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G 186 (292)
T PRK03170 130 I--ILY------NVPGRTGVDILPETVARLAEHPNIVGIKEATGDLERVSELIELVPDDFAVYSG 186 (292)
T ss_pred E--EEE------ECccccCCCCCHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHhCCCCeEEEEC
No 253
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=24.24 E-value=1.7e+02 Score=30.57 Aligned_cols=63 Identities=29% Similarity=0.353 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChh
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~W 209 (511)
+.+...+.|+.+|++|+.. +||. +|.-+-=. =..|.++.++.|+.|.+.=.||. ....|.|
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~-T~~g~GRd-~~~l~~is~~tGv~II~~TG~y~---------~~~~p~~ 96 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDA-TPIGLGRD-VEALREISRRTGVNIIASTGFYK---------EPFYPEW 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE-S---------GGCSCHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEec-CCcccCcC-HHHHHHHHHHhCCeEEEeCCCCc---------cccCChh
Confidence 6788899999999999876 5665 44322222 27788899999999966666664 1235788
Q ss_pred HH
Q 010415 210 VM 211 (511)
Q Consensus 210 V~ 211 (511)
+.
T Consensus 97 ~~ 98 (308)
T PF02126_consen 97 VR 98 (308)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 254
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=24.21 E-value=1.3e+02 Score=31.40 Aligned_cols=44 Identities=23% Similarity=0.475 Sum_probs=36.3
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCC-------ceecchhHHHHHHHHHHcCCc
Q 010415 136 NQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELK 184 (511)
Q Consensus 136 ~~L~~LK~~GVdGV~vdvWWGiVE~~~p-------~~YdWs~Y~~l~~mvr~~GLK 184 (511)
..|+.||++||+.|.+.| |.-.+ ..+++.-+.+.+++++++|++
T Consensus 100 e~l~~l~~~G~~rvsiGv-----qS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL-----QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HHHHHHHHcCCCEEEEEC-----ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 578999999999999998 54332 345788899999999999987
No 255
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=24.18 E-value=1.7e+02 Score=31.06 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHH----HHH-HHcCCcEEEEEeeeccCCCCCCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLF----QIV-RELELKLQVVMSFHECGGNVGDD 201 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~----~mv-r~~GLKvqvVmsFHqCGGNVGD~ 201 (511)
..++++.++.|+.+||.-|-+|.= |+.-.+... |..|.+.+ +.+ +..|-++ -++.|-|.|+..+.
T Consensus 157 A~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~d~--~i~~HiCy~e~~~~ 227 (330)
T COG0620 157 ALALRDEVKDLEDAGIKIIQIDEPALREGLPLRR----DDDYLEWAVEAINLAAAGVGADT--QIHLHICYSEFNDI 227 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEeechhhhhcCCcccc----chHHHHHHHHHHHHHHhcCCCCc--EEEEEEECCcccch
Confidence 467778889999999999999994 777665322 23443332 222 2345556 56778999976664
No 256
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.16 E-value=44 Score=34.45 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHH----HHHHHcCCcEEEEEeeec
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLF----QIVRELELKLQVVMSFHE 193 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~----~mvr~~GLKvqvVmsFHq 193 (511)
..+|.+|+..||+.|-.--+|= ++...++.|- ..+++|. .-+.++|||+.+-+..|-
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~-~h~~rl~~~E~~Ra~~~Gl~~~vavGvHP 74 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDP-YPMKTAEVYL-DHFRRLLGVEPERAEKAGLKLKVAVGVHP 74 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCC-CCcccHHHHH-HHHHHHHccchhhHHhhCceeeEEeccCC
Confidence 3689999999999999988888 7776676652 2333443 347899999999999884
No 257
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=24.11 E-value=2.2e+02 Score=29.12 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred ccEEEeeccceeeCCCcccChHHHHHHHHHHHHc--CcceEE----------EeeeeeeeecCC-----Ccee-------
Q 010415 111 VPVYVMLPLGIIDMNCELVDPEILVNQLKILKSI--NVDGVM----------VDCWWGIVEAHT-----PQVY------- 166 (511)
Q Consensus 111 vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~--GVdGV~----------vdvWWGiVE~~~-----p~~Y------- 166 (511)
+||+|-|+.+. +...+.+-.+.+.+. ||+||. +| .|+.. .+.|
T Consensus 158 iPv~vKl~p~~--------~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id-----~~~~~~~~~~~~~~gG~SG~~ 224 (294)
T cd04741 158 IPVGVKTPPYT--------DPAQFDTLAEALNAFACPISFITATNTLGNGLVLD-----PERETVVLKPKTGFGGLAGAY 224 (294)
T ss_pred CCEEEEeCCCC--------CHHHHHHHHHHHhccccCCcEEEEEccCCcccccc-----CCCCCcccCCCCCCCCcCchh
Q ss_pred -cchhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010415 167 -NWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (511)
Q Consensus 167 -dWs~Y~~l~~mvr~~GLKvqvVmsFHqCGG 196 (511)
.|...+.+.++.+..+.++ +|++ |||
T Consensus 225 i~~~al~~v~~~~~~~~~~i-pIig---~GG 251 (294)
T cd04741 225 LHPLALGNVRTFRRLLPSEI-QIIG---VGG 251 (294)
T ss_pred hHHHHHHHHHHHHHhcCCCC-CEEE---eCC
No 258
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=23.97 E-value=1.6e+02 Score=31.06 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee--eeeeecCCCceecchhHHHHHHHHHHcCC
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW--WGIVEAHTPQVYNWSGYRRLFQIVRELEL 183 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW--WGiVE~~~p~~YdWs~Y~~l~~mvr~~GL 183 (511)
++-+.---++.+++|.||+|+.|. =...=..++|+.++..++++.+-++..+.
T Consensus 228 r~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 228 RDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred hhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 333444445668899999999998 33333457899999999999998887654
No 259
>PRK05926 hypothetical protein; Provisional
Probab=23.82 E-value=70 Score=34.17 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCcceEEEeee----eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEE
Q 010415 134 LVNQLKILKSINVDGVMVDCW----WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdvW----WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVm 189 (511)
.+..|++||++|++-+...-+ .-+-+.-.|++-....+.+..+.+++.||++-.-|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgm 227 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATM 227 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCce
Confidence 467799999999997764301 11122233667777888999999999999994433
No 260
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=23.56 E-value=1.7e+02 Score=29.69 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=32.6
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCcee----cchhHHHHHHHHHHcCCcEEEEEe
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVY----NWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y----dWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
....||++|+++|.+. +++++- +=.--.+-+..+.++||+. |+|
T Consensus 76 S~~mL~d~G~~~viiG--------HSERR~~f~Et~~~i~~Kv~~a~~~gl~p--IvC 123 (242)
T cd00311 76 SAEMLKDAGAKYVIIG--------HSERRQYFGETDEDVAKKVKAALEAGLTP--ILC 123 (242)
T ss_pred CHHHHHHcCCCEEEeC--------cccccCcCCCCcHHHHHHHHHHHHCCCEE--EEE
Confidence 5678999999999996 455552 3344555566888899987 888
No 261
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=23.46 E-value=2.2e+02 Score=32.67 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEee
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsF 191 (511)
.+.++..++..++.||+.|.|-.-..-+ .--...+++|+++|+++++.+||
T Consensus 96 ddvv~~~v~~a~~~Gid~~rifd~lnd~----------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 96 DDVVERFVERAVKNGMDVFRVFDAMNDP----------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeeCCcH----------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 3567888888888899888776432222 35667888888888888887775
No 262
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=23.41 E-value=1.5e+02 Score=33.10 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
+.+++.+..+.++++|...||+++++ +-|+..+.|.+.+++.+|-|+.=-++|
T Consensus 246 ~~~em~~ra~~a~e~G~~~~mv~~~~----------~G~~al~~l~~~~~~~~l~IhaHrA~~ 298 (475)
T CHL00040 246 TCEEMYKRAVFARELGVPIVMHDYLT----------GGFTANTSLAHYCRDNGLLLHIHRAMH 298 (475)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeccc----------cccchHHHHHHHhhhcCceEEeccccc
Confidence 57899999999999999999999876 347778888888888876554434444
No 263
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=23.40 E-value=87 Score=31.63 Aligned_cols=26 Identities=12% Similarity=-0.056 Sum_probs=23.7
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeee
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCW 154 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvW 154 (511)
.|...++.+|++|+++|+|-+++||=
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVM 47 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIA 47 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEecc
Confidence 36789999999999999999999984
No 264
>PRK14565 triosephosphate isomerase; Provisional
Probab=23.17 E-value=1.3e+02 Score=30.52 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=35.3
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHH----HHHHHcCCcEEEEEe
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLF----QIVRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~----~mvr~~GLKvqvVms 190 (511)
.-..||++|++.|.+. +++++=.+.-=++.+ +.+.++||+. |+|
T Consensus 77 S~~mLkd~G~~~viiG--------HSERR~~f~Etd~~V~~Kv~~al~~gl~p--IvC 124 (237)
T PRK14565 77 SAKMLKECGCSYVILG--------HSERRSTFHETDSDIRLKAESAIESGLIP--IIC 124 (237)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCcCCcCHHHHHHHHHHHHHCCCEE--EEE
Confidence 4578999999999996 566666677767777 7788899987 888
No 265
>PTZ00445 p36-lilke protein; Provisional
Probab=23.13 E-value=1.8e+02 Score=29.59 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=45.9
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecch------------hHHHHHHHHHHcCCcEEEE
Q 010415 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS------------GYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs------------~Y~~l~~mvr~~GLKvqvV 188 (511)
++..+....=.+.||+.||..|-+|.==-+|..++.|..++. ..++++..++++|++|-||
T Consensus 25 ~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 25 LNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVV 97 (219)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence 345566666677899999999999976666665555655553 4788999999999999443
No 266
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=22.98 E-value=1.3e+02 Score=34.78 Aligned_cols=64 Identities=14% Similarity=0.355 Sum_probs=40.9
Q ss_pred HHHHH--HHHHHHHcCcceEEEe-e----------------eeeeeec---CCCcee----cchhHHHHHHHHHHcCCcE
Q 010415 132 EILVN--QLKILKSINVDGVMVD-C----------------WWGIVEA---HTPQVY----NWSGYRRLFQIVRELELKL 185 (511)
Q Consensus 132 ~~~~~--~L~~LK~~GVdGV~vd-v----------------WWGiVE~---~~p~~Y----dWs~Y~~l~~mvr~~GLKv 185 (511)
.++.. .|..||++||+.|.+- | .||.-=. .-+..| .-..+++|++.+.+.||+|
T Consensus 182 ~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 182 AGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred HHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 45554 4999999999999763 2 2442100 001122 2456999999999999999
Q ss_pred EEEEee-eccC
Q 010415 186 QVVMSF-HECG 195 (511)
Q Consensus 186 qvVmsF-HqCG 195 (511)
..=+-| |-+.
T Consensus 262 IlDvV~NHt~~ 272 (688)
T TIGR02100 262 ILDVVYNHTAE 272 (688)
T ss_pred EEEECcCCccC
Confidence 655555 5443
No 267
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.86 E-value=1.8e+02 Score=27.44 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=33.7
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEe
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVms 190 (511)
+++.++++|+|.|.+.+..+ + ..-.++.+.++++|+++.+-|+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------~----~~~~~~i~~~~~~g~~~~~~~~ 110 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------D----ATIKGAVKAAKKHGKEVQVDLI 110 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------H----HHHHHHHHHHHHcCCEEEEEec
Confidence 78889999999999986542 1 2246899999999999966554
No 268
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=22.64 E-value=1.7e+02 Score=28.74 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=42.6
Q ss_pred hHHHHHHHHHcCcEEEEeeccccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCc
Q 010415 372 YAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALP 434 (511)
Q Consensus 372 Y~~Ia~mf~kh~~~l~FTClEM~d~~~~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~ 434 (511)
-..|++.+.+.|....++|+--.--+... -...--+.++..+....++.|+.++|||.--
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~---lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE~ 183 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESW---LGREIDEKYIEKLKALNKRYGINPAGEGGEY 183 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHH---CCCccCHHHHHHHHHHHhhcCccccCCCcee
Confidence 56789999999999999998432111100 0122225788888898999999999999754
No 269
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=22.64 E-value=1.5e+02 Score=31.53 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee--eeeeec------CCCceecchhHHHHHHHHHHcCCcEEEE
Q 010415 131 PEILVNQLKILKSINVDGVMVDCW--WGIVEA------HTPQVYNWSGYRRLFQIVRELELKLQVV 188 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvW--WGiVE~------~~p~~YdWs~Y~~l~~mvr~~GLKvqvV 188 (511)
.+.+...|++|++.|+|||-+|+= |-.||. .++-+=.=..|.++.+++|...=-+++|
T Consensus 125 kdii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi 190 (300)
T COG2342 125 KDIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVI 190 (300)
T ss_pred HHHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 367889999999999999988863 222221 1222333455888999999776555444
No 270
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=22.60 E-value=2.7e+02 Score=24.83 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCC---------ceecchhHHHHHHHHHHcC-CcEEEEE
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTP---------QVYNWSGYRRLFQIVRELE-LKLQVVM 189 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p---------~~YdWs~Y~~l~~mvr~~G-LKvqvVm 189 (511)
...++.|+++|++.|.+++ ++. ....++-+.+.++.++++| +++...+
T Consensus 100 ~~~~~~l~~~~~~~i~isl-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 100 EELLEALKEAGVNRVSLGV-------QSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
No 271
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.60 E-value=2.3e+02 Score=29.22 Aligned_cols=87 Identities=15% Similarity=0.248 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecchh-----HHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 010415 131 PEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWSG-----YRRLFQIVRELELKLQVVMSFHECGGNVGDDVH 203 (511)
Q Consensus 131 ~~~~~~~L~~LK~~G--VdGV~vdvWWGiVE~~~p~~YdWs~-----Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~ 203 (511)
.+.+.+-++.+++.| +|.|.+|.=|-.-+...-+.|+|.- -+++++-+++.|+|+ ++..|-+=.. +
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~--~~~i~P~i~~--~--- 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRL--APNIKPGLLQ--D--- 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEE--EEEeCCcccC--C---
Confidence 678888889999877 4888888433222221223466643 678889999999999 5555543211 1
Q ss_pred CCCChhHHhhhccCCCeeeecCCCCc
Q 010415 204 IPLPQWVMEIGQNNPEIYFTDREGRR 229 (511)
Q Consensus 204 IpLP~WV~e~g~~~PDI~ftDr~G~r 229 (511)
=|. -+++.+ -+.|.++.+|..
T Consensus 101 --~~~--y~e~~~-~g~~v~~~~g~~ 121 (317)
T cd06599 101 --HPR--YKELKE-AGAFIKPPDGRE 121 (317)
T ss_pred --CHH--HHHHHH-CCcEEEcCCCCC
Confidence 122 344433 378888887753
No 272
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=22.49 E-value=1.5e+02 Score=31.24 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCce----------ecchhHHHHHHHHHHcCCc
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQV----------YNWSGYRRLFQIVRELELK 184 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~----------YdWs~Y~~l~~mvr~~GLK 184 (511)
.++++.||++||+.+++.+ |.-.+.. -+|..-.+.++.++++|++
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 4567999999999999853 4422333 3566667789999999997
No 273
>PRK03705 glycogen debranching enzyme; Provisional
Probab=22.42 E-value=1.1e+02 Score=35.36 Aligned_cols=54 Identities=15% Similarity=0.469 Sum_probs=36.7
Q ss_pred HHHHHHHcCcceEEEe-e----------------eeee-------eecCCCceec------chhHHHHHHHHHHcCCcEE
Q 010415 137 QLKILKSINVDGVMVD-C----------------WWGI-------VEAHTPQVYN------WSGYRRLFQIVRELELKLQ 186 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vd-v----------------WWGi-------VE~~~p~~Yd------Ws~Y~~l~~mvr~~GLKvq 186 (511)
.|..||++||+.|.+- | .||. +|+ .|- =..++++++-+.+.||||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~----~ygt~~~~~~~efk~LV~~~H~~GI~VI 259 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP----AYASGPETALDEFRDAVKALHKAGIEVI 259 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc----ccCCCCcchHHHHHHHHHHHHHCCCEEE
Confidence 4899999999999762 2 2432 221 111 1258999999999999996
Q ss_pred EEEee-ecc
Q 010415 187 VVMSF-HEC 194 (511)
Q Consensus 187 vVmsF-HqC 194 (511)
.=+-| |-+
T Consensus 260 lDvV~NHt~ 268 (658)
T PRK03705 260 LDVVFNHSA 268 (658)
T ss_pred EEEcccCcc
Confidence 65556 543
No 274
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=22.41 E-value=4.3e+02 Score=28.08 Aligned_cols=86 Identities=13% Similarity=0.210 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCCccCCCChh
Q 010415 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (511)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~--GLKvqvVmsFHqCGGNVGD~~~IpLP~W 209 (511)
....+=+.+||++|++-|. |- -.--||.-+.+..+++.+. |-+ .++++ + .=|.|
T Consensus 110 ~~~~~l~~~lk~lGf~~v~--------et--~~~ad~~~~e~~~e~i~~~~~~~~-~p~it----------S---~CP~~ 165 (374)
T TIGR02512 110 DVTGKMVAALRKLGFDYVF--------DT--NFAADLTIMEEGTELLERLKNGGK-LPMFT----------S---CCPGW 165 (374)
T ss_pred hHHHHHHHHHHHcCCCEEE--------EC--cHHHHHHHHHHHHHHHHHhhcCCC-CCeEe----------c---CCHHH
Confidence 3456777888899998753 32 2345888877777777642 223 24566 2 25999
Q ss_pred HHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHH
Q 010415 210 VMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSF 260 (511)
Q Consensus 210 V~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF 260 (511)
|.=+-+.+|+++ .+||-. ++|++.=..++++.
T Consensus 166 v~~iek~~P~li----------~~ls~v---------~SP~~~~g~~iK~~ 197 (374)
T TIGR02512 166 VNYAEKYYPELL----------PNLSSC---------KSPQQMLGAVIKTY 197 (374)
T ss_pred HHHHHHHChhhh----------ccccCC---------CChHHHHHHHHHHH
Confidence 998888888853 456644 68999887777664
No 275
>PLN02681 proline dehydrogenase
Probab=22.36 E-value=1.1e+03 Score=26.23 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=35.7
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-Ccee--cchhHHHHHHHHHHcCCc
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-PQVY--NWSGYRRLFQIVRELELK 184 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~-p~~Y--dWs~Y~~l~~mvr~~GLK 184 (511)
.+.+....-+++|++.|+.+ ++|.= +|... +..+ +-..|.++++++.+.+..
T Consensus 92 Et~~e~~~~i~~L~~~G~~~-iLdy~---~E~~~~e~~~d~~~~~~l~~Id~~~~~~~~ 146 (455)
T PLN02681 92 EDAEEAARTVRRLWELGLGG-ILDYA---AEDAGDNAACDRNLEKFLAAIRAAATLPPS 146 (455)
T ss_pred CCHHHHHHHHHHHHHCCCeE-Eeecc---ccCcCCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 46788888999999999987 67763 34321 2222 345688888888877653
No 276
>PRK00111 hypothetical protein; Provisional
Probab=22.30 E-value=1.4e+02 Score=29.36 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCceEEEEEeecccCcccCCCCCCCCCC-CccCCCcc
Q 010415 251 EVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGE 304 (511)
Q Consensus 251 ~~Y~dfm~SF~~~f~~~~g~~~I~eI~VGLGPaGELRYPSyp~~~G-W~~PGiGE 304 (511)
+.-+=........+++++|..+|.+|-| .||.+ ||. .+| |+.+|.|-
T Consensus 128 tEL~~~r~~Il~rLNe~LG~~vV~dIri-~GP~~----psw--~~G~~~v~grgp 175 (180)
T PRK00111 128 TNLRMMQRQILQVIAEKVGPDIITELRI-FGPQA----PSW--RKGPLHVKGRGP 175 (180)
T ss_pred HHHHhHHHHHHHHHHHHcCcCceeEEEE-ECCCC----CCC--CcCCCcCCCCCC
Confidence 4444445678889999999889999999 99974 332 345 77788773
No 277
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=22.23 E-value=2.9e+02 Score=27.85 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=43.1
Q ss_pred eeCCCcccCh---HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeee
Q 010415 122 IDMNCELVDP---EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (511)
Q Consensus 122 V~~~~~~~~~---~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFH 192 (511)
|+.-|.+.+. ..++.-|...+++||..+++.. .++..++++.++++++. ++.+.+.+|
T Consensus 6 iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~------------~~~~~~~~~~~l~~~~~-~v~~~~GiH 66 (258)
T PRK11449 6 IDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPA------------TEAENFARVLALAERYQ-PLYAALGLH 66 (258)
T ss_pred EEeccCCCChhhccCHHHHHHHHHHCCCCEEEEee------------CCHHHHHHHHHHHHhCC-CEEEEEeeC
Confidence 4445555442 2466778899999999987532 27888899999999887 588899988
No 278
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=21.84 E-value=91 Score=32.37 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCcee----cchhHHHHHHHHHHcCCcEEE--EEeee
Q 010415 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVY----NWSGYRRLFQIVRELELKLQV--VMSFH 192 (511)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y----dWs~Y~~l~~mvr~~GLKvqv--VmsFH 192 (511)
+.+|++||..+||.|.+|.. |.=|- =-+.| .=.-|.+.+.++++.|++|.+ ++..|
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~v-Ik~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~ 161 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDV-IKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLD 161 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHH-HHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEec
Confidence 67899999999999999975 11110 00122 234699999999999999954 44444
No 279
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=21.73 E-value=9e+02 Score=25.36 Aligned_cols=92 Identities=8% Similarity=0.157 Sum_probs=56.3
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----hH--HHHHHHHHHcCCcEEEEEeeeccCCCC
Q 010415 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GY--RRLFQIVRELELKLQVVMSFHECGGNV 198 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~G--VdGV~vdvWWGiVE~~~p~~YdWs-----~Y--~~l~~mvr~~GLKvqvVmsFHqCGGNV 198 (511)
..+.+.+.+-++.+++.| +|+|.+|+=|. + .-+.|+|. -- +++++-+++.|+|| ++..|-.- ++
T Consensus 20 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~--~~~i~P~v-~~ 92 (339)
T cd06602 20 YKNVDEVKEVVENMRAAGIPLDVQWNDIDYM--D--RRRDFTLDPVRFPGLKMPEFVDELHANGQHY--VPILDPAI-SA 92 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECcccc--c--CccceecccccCCCccHHHHHHHHHHCCCEE--EEEEeCcc-cc
Confidence 456788999999998865 68999996653 1 22445443 45 88999999999999 44444221 11
Q ss_pred CCCccCCCChhHHhhhccCCCeeeecCCCCcc
Q 010415 199 GDDVHIPLPQWVMEIGQNNPEIYFTDREGRRN 230 (511)
Q Consensus 199 GD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn 230 (511)
.. ..-.-+.+ +++.+ -+.|.++.+|...
T Consensus 93 ~~-~~~~~~~~--~e~~~-~g~~v~~~~g~~~ 120 (339)
T cd06602 93 NE-PTGSYPPY--DRGLE-MDVFIKNDDGSPY 120 (339)
T ss_pred Cc-CCCCCHHH--HHHHH-CCeEEECCCCCEE
Confidence 10 00012222 33432 3778888888653
No 280
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=21.58 E-value=1.6e+02 Score=32.39 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEE
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (511)
+.+++.+..+.++++|.++|||++++. -|+..+.|.+.+++.+|-|+.
T Consensus 222 ~~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ih~ 269 (412)
T TIGR03326 222 PVREMERRAELVADLGGQYVMVDVVVC----------GWSALQYIRELTEDLGLAIHA 269 (412)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeecc----------chHHHHHHHHhhccCCeEEEE
Confidence 468999999999999999999998763 366666666665565554433
No 281
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.57 E-value=2e+02 Score=28.68 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=43.1
Q ss_pred EEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeee-ecCCCceecchhHHHHHHHHHHc
Q 010415 114 YVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIV-EAHTPQVYNWSGYRRLFQIVREL 181 (511)
Q Consensus 114 yVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiV-E~~~p~~YdWs~Y~~l~~mvr~~ 181 (511)
.+..|++ .+++ .|++++++.++.|.+.||+||.+. |.. |. -....+-++++++.+.+.
T Consensus 7 ~~~TPf~---~dg~-iD~~~~~~~i~~l~~~Gv~gl~v~---GstGE~---~~lt~~Er~~l~~~~~~~ 65 (284)
T cd00950 7 ALVTPFK---DDGS-VDFDALERLIEFQIENGTDGLVVC---GTTGES---PTLSDEEHEAVIEAVVEA 65 (284)
T ss_pred eeeCCcC---CCCC-cCHHHHHHHHHHHHHcCCCEEEEC---CCCcch---hhCCHHHHHHHHHHHHHH
Confidence 3444554 2444 699999999999999999999765 433 22 356778899999988876
No 282
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=21.52 E-value=2.9e+02 Score=35.65 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec-------------chhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHECG 195 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mvr~~GLKvqvVmsFHqCG 195 (511)
.-+++.+.|..||++||+.|-+.=.+--... +..-|| ...+++|++.++++||||..=+-+.-+|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~g-s~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPG-STHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCC-CCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 4588999999999999999988766542211 222333 4568899999999999996555554444
No 283
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.51 E-value=2.6e+02 Score=28.55 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEE
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (511)
+.+.+.+.++.+++.|++.|.+- | ...| .+++.+|.++++.+++.+.++..
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~---g---g~~~-~~~~~~~~~i~~~Ik~~~~~i~~ 87 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQ---G---GLNP-QLDIEYYEELFRAIKQEFPDVHI 87 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe---c---CCCC-CCCHHHHHHHHHHHHHHCCCceE
Confidence 56788888999999999988772 1 1223 36789999999999999766643
No 284
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.30 E-value=1.3e+02 Score=29.39 Aligned_cols=55 Identities=7% Similarity=0.152 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc--hhHHHHHHHHHHcCCcE
Q 010415 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW--SGYRRLFQIVRELELKL 185 (511)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdW--s~Y~~l~~mvr~~GLKv 185 (511)
.+.+++.++..+.+|+..|.+.-+..--+......+.| +.++++.++++++|+++
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 35777888999999999997744321111111122222 46889999999999877
No 285
>PLN02429 triosephosphate isomerase
Probab=21.26 E-value=1.5e+02 Score=31.57 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=36.2
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHH----HHHcCCcEEEEEe
Q 010415 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQI----VRELELKLQVVMS 190 (511)
Q Consensus 137 ~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~m----vr~~GLKvqvVms 190 (511)
.-..||++|+..|.+. +++++=.+..=++.+.. +.++||+. |+|
T Consensus 139 Sa~mLkd~Gv~~ViiG--------HSERR~~f~Etd~~V~~Kv~~al~~GL~p--IvC 186 (315)
T PLN02429 139 SVEQLKDLGCKWVILG--------HSERRHVIGEKDEFIGKKAAYALSEGLGV--IAC 186 (315)
T ss_pred CHHHHHHcCCCEEEeC--------ccccCCCCCcCHHHHHHHHHHHHHCcCEE--EEE
Confidence 4578999999999996 56666667777888877 99999998 888
No 286
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=21.23 E-value=1e+02 Score=30.54 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--cchhHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCCccCC
Q 010415 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHIP 205 (511)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y--dWs~Y~~l~~mvr~~--GLKvqvVmsFHqCGGNVGD~~~Ip 205 (511)
|...++++|++|+++|+|-+++|| -+|+| |.+.=-+.++.+|+. .+.+ ..|----|
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~Dv--------mDG~Fvpn~tfg~~~i~~i~~~~~~~~~----dvHLMv~~-------- 69 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDV--------MDNHYVPNLTFGAPICKALRDYGITAPI----DVHLMVKP-------- 69 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec--------ccCcccCccccCHHHHHHHHHhCCCCCE----EEEeccCC--------
Confidence 678999999999999999999998 35666 555555666666664 3433 33321111
Q ss_pred CChhHHhhhccCCCeeeecCCCCccc-ceee----eccCccccccCCchhHHHHHHHH
Q 010415 206 LPQWVMEIGQNNPEIYFTDREGRRNS-ECLT----WGIDKERVLRGRTAVEVYFDYMR 258 (511)
Q Consensus 206 LP~WV~e~g~~~PDI~ftDr~G~rn~-E~lS----l~~D~~pvl~GRTpi~~Y~dfm~ 258 (511)
+=.|+-.-.+.-+|++..--+=..+. +.|. .|+----+|.=-||++.+.++..
T Consensus 70 p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 70 VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 22255444455566665544422221 2221 33322233455689988876653
No 287
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.20 E-value=2.4e+02 Score=28.21 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=44.0
Q ss_pred ccChHHHHHHHHHHHHc--CcceEEEeeeeeeeecCCCcee--c-----chhHHHHHHHHHHcCCcEEEEE
Q 010415 128 LVDPEILVNQLKILKSI--NVDGVMVDCWWGIVEAHTPQVY--N-----WSGYRRLFQIVRELELKLQVVM 189 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~--GVdGV~vdvWWGiVE~~~p~~Y--d-----Ws~Y~~l~~mvr~~GLKvqvVm 189 (511)
..+.+.+.+-.+.+++. -+|.|.+|.+|.. .-+.+ + |.--+++++-+++.|+|+.+++
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~----~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~ 86 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTD----GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWI 86 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECccccc----CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 35788899999999985 5689999999973 23444 3 4456889999999999994444
No 288
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=21.06 E-value=9.3e+02 Score=24.90 Aligned_cols=87 Identities=14% Similarity=0.277 Sum_probs=55.5
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010415 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (511)
Q Consensus 128 ~~~~~~~~~~L~~LK~~G--VdGV~vdvWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD 200 (511)
..+.+.+..-++.+++.+ +|.|.+|+=|. . +-+.|+|+ --+++++-+++.|+||.+++-=|- ..
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i-----~~ 90 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGI-----RV 90 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccc-----cC
Confidence 456788899999998876 58999996552 1 23456554 478899999999999955543111 10
Q ss_pred CccCCCChhHHhhhccCCCeeeecCCCC
Q 010415 201 DVHIPLPQWVMEIGQNNPEIYFTDREGR 228 (511)
Q Consensus 201 ~~~IpLP~WV~e~g~~~PDI~ftDr~G~ 228 (511)
+. .-|.+. ++ ...+.|.++.+|.
T Consensus 91 ~~--~~~~~~--~~-~~~~~~v~~~~g~ 113 (317)
T cd06600 91 DQ--NYSPFL--SG-MDKGKFCEIESGE 113 (317)
T ss_pred CC--CChHHH--HH-HHCCEEEECCCCC
Confidence 11 123332 23 2347888888875
No 289
>PRK14057 epimerase; Provisional
Probab=20.79 E-value=1.1e+02 Score=31.68 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=23.7
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeee
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCW 154 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvW 154 (511)
.|...++++|++|+++|+|-+++||=
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVM 54 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLM 54 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEecc
Confidence 36789999999999999999999984
No 290
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=20.64 E-value=1.1e+02 Score=30.66 Aligned_cols=110 Identities=17% Similarity=0.146 Sum_probs=63.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--cchhHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCCccC
Q 010415 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHI 204 (511)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~Y--dWs~Y~~l~~mvr~~--GLKvqvVmsFHqCGGNVGD~~~I 204 (511)
-|...++.+|++|+++|+|-+++|| -+|+| |.+-=-+.++.+|+. .+.+ ..|----
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDi--------mDG~FVPN~tfg~~~i~~lr~~~~~~~~----dvHLMv~-------- 72 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDV--------MDNHYVPNLTIGPMVCQALRKHGITAPI----DVHLMVE-------- 72 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEec--------ccCccCCCcccCHHHHHHHHhhCCCCCE----EEEeccC--------
Confidence 3678999999999999999999998 35666 455445566666665 3333 2222110
Q ss_pred CCChhHHhhhccCCCeeeecCCCCccc-cee----eeccCccccccCCchhHHHHHHHH
Q 010415 205 PLPQWVMEIGQNNPEIYFTDREGRRNS-ECL----TWGIDKERVLRGRTAVEVYFDYMR 258 (511)
Q Consensus 205 pLP~WV~e~g~~~PDI~ftDr~G~rn~-E~l----Sl~~D~~pvl~GRTpi~~Y~dfm~ 258 (511)
.+=.|+-.-.+.-+|++..--+-..+. +.| +.|+--==+|+=-||++.+..+..
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~ 131 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLP 131 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHh
Confidence 133366555555667666554433222 211 122211112344689988877643
No 291
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=20.63 E-value=1.5e+02 Score=30.42 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=36.7
Q ss_pred CCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcC-------------cceEEE
Q 010415 106 AGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSIN-------------VDGVMV 151 (511)
Q Consensus 106 ~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~G-------------VdGV~v 151 (511)
..-+..+|++++|...-+.++..+.++.+...|..|+..+ +-|||+
T Consensus 234 ~~~p~~Kv~iG~pa~~~aa~~gyv~~~~l~~~i~~l~~~~~~~~~~~~~~y~~~gGvm~ 292 (312)
T cd02871 234 PPLPADKVVIGLPASPSAAGGGYVSPSEVIKALDCLMKGTNCGSYYPAGGYPSLRGLMT 292 (312)
T ss_pred ccCChhhEEEeccCCCCccCCCccCHHHHHHHHHHHhcCCCCCcccCCCCCCCcceEEE
Confidence 3456778999999875444456789999999999999864 889997
No 292
>PRK14705 glycogen branching enzyme; Provisional
Probab=20.56 E-value=1.7e+02 Score=36.39 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=37.4
Q ss_pred hHHHHHH-HHHHHHcCcceEEEeeeeeeeecCCCceecch-----------------hHHHHHHHHHHcCCcEEEEEe
Q 010415 131 PEILVNQ-LKILKSINVDGVMVDCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVVMS 190 (511)
Q Consensus 131 ~~~~~~~-L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs-----------------~Y~~l~~mvr~~GLKvqvVms 190 (511)
-+++... |..||++||+.|.+== +.| -|..++|- .++++++.+.+.||+| ||-
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmP---v~e--~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~V--ILD 834 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMP---VAE--HPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGV--LLD 834 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECc---ccc--CCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEE--EEE
Confidence 3555556 6999999999997531 223 23334453 3899999999999999 554
No 293
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=20.32 E-value=2.4e+02 Score=26.28 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=62.1
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccCCCChhHHhhhccC
Q 010415 138 LKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNN 217 (511)
Q Consensus 138 L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~IpLP~WV~e~g~~~ 217 (511)
..+||+.||++|++=+.-|. .|.=..|.+-.+.++++||++-+-.-++.| |..+. .. ==.|+.+
T Consensus 12 w~~~k~~gi~fviikateG~-------~~~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~a-~~-qA~~f~~----- 75 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGT-------SYVDPYFESNIKNAKAAGLPVGAYHFARAT--NSSDA-EA-QADYFLN----- 75 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETT-------TEE-TTHHHHHHHHHHTTSEEEEEEE--TT--THCHH-HH-HHHHHHH-----
T ss_pred HHHHHHCCCCEEEEEeeeCC-------CeecchHHHHHHHHHHcCCeEEEEEEeccC--CcccH-HH-HHHHHHH-----
Confidence 56779999999999986433 133356788889999999998665555543 22220 00 0012222
Q ss_pred CCeeeecCCCCcccceeeeccCccccccCCchhHHHHHHHHHHHHHHhhhhc
Q 010415 218 PEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (511)
Q Consensus 218 PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~dfm~SF~~~f~~~~g 269 (511)
.-+......+-+++|-+--...........+.++.|.+++....|
T Consensus 76 -------~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~~G 120 (181)
T PF01183_consen 76 -------QVKGGDPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKAAG 120 (181)
T ss_dssp -------CTHTSSTSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHHCT
T ss_pred -------HhcccCCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 221111222223444331123345578889999999999977665
No 294
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=20.30 E-value=1.2e+03 Score=26.00 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=90.1
Q ss_pred CcccChHHHHHHHHHHHHc--CcceEEEeeeeeeeecC---CCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010415 126 CELVDPEILVNQLKILKSI--NVDGVMVDCWWGIVEAH---TPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (511)
Q Consensus 126 ~~~~~~~~~~~~L~~LK~~--GVdGV~vdvWWGiVE~~---~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD 200 (511)
|.-.+++.+.+++..+.++ |-.-|.+-.=|+ |.. .-.+..=.-|..+++.|++.||++
T Consensus 63 G~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~--~~d~~vdrd~~~p~hf~~w~~~Ak~~glgl--------------- 125 (414)
T TIGR01748 63 GKARTPSELRADLEKAMSLIPGKHRLNLHAIYL--ETDEPVSRDEIKPEHFKNWVEWAKANGLGL--------------- 125 (414)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceeeecccc--cCCCcccccccCcccHHHHHHHHHHcCCCc---------------
Confidence 5557889999999888775 888999999995 321 113333467889999999999999
Q ss_pred CccCCCChhHHhhhccCCCeeeecCCCCcccceeeeccCccccccCCchhHHHHHH-------HHHHHHHHhhhhcCceE
Q 010415 201 DVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDY-------MRSFRVEFNEFFVDGII 273 (511)
Q Consensus 201 ~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~Y~df-------m~SF~~~f~~~~g~~~I 273 (511)
.-||..| .+.. .+.=+||+ .|-+.=|+| ++.+.+.|..-+|+..|
T Consensus 126 --------------DfNpn~F-sh~~---~k~G~SLs----------hpD~~iR~fwI~H~~~c~~I~~~fg~~lGs~~l 177 (414)
T TIGR01748 126 --------------DFNPTCF-SHPL---SADGFTLS----------HPDDSIRQFWIDHCKASRRISEYFGKELGTPSV 177 (414)
T ss_pred --------------CcCcccC-CCcc---ccCCCccc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 1233333 1111 01122333 223333333 56677888888887444
Q ss_pred EEEEeecccCcccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHcCcccc
Q 010415 274 AEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW 328 (511)
Q Consensus 274 ~eI~VGLGPaGELRYPSyp~~~GW~~PGiGEFQCYDky~~~~lr~~a~~~G~~~W 328 (511)
..|=| .+|-+|||...|.- =+.++.+|.+--.+.-.+-|
T Consensus 178 ~niWi---------------pDG~kd~~~d~~~~-r~Rl~eSLdeI~a~~l~~~~ 216 (414)
T TIGR01748 178 MNIWI---------------PDGMKDIPVDRLTP-RKRLLEALDEVFSEKLNEAH 216 (414)
T ss_pred heeec---------------CCCCCCCCcccccH-HHHHHHHHHHHHHhhcCchh
Confidence 44443 26888999887776 66777888877666444444
No 295
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=20.27 E-value=1.4e+02 Score=31.49 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCcc
Q 010415 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVH 203 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~ 203 (511)
.++.-...|++.|++.. ++..||++. +.+..+++++++++.+....+-+. ||.|-|...
T Consensus 40 ~~~~v~~~L~~~g~~~~----~~~~v~~~p----~~~~v~~~~~~~~~~~~D~IIavG----GGSviD~AK 98 (375)
T cd08179 40 FLDKVEAYLKEAGIEVE----VFEGVEPDP----SVETVLKGAEAMREFEPDWIIALG----GGSPIDAAK 98 (375)
T ss_pred hHHHHHHHHHHcCCeEE----EeCCCCCCc----CHHHHHHHHHHHHhcCCCEEEEeC----CccHHHHHH
Confidence 34444555678888642 455565532 788999999999999998855555 777888764
No 296
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.18 E-value=4.6e+02 Score=27.04 Aligned_cols=79 Identities=15% Similarity=0.298 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCccC--CCChh
Q 010415 133 ILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI--PLPQW 209 (511)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdvW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNVGD~~~I--pLP~W 209 (511)
+.+.--+..++.|+.||-+-=+ ++.-.. .+. |..+++.|.++|+-|+. |-=.+-.+...+- ..|.=
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~~~~~~-~~~------~~pi~~~a~~~gvpv~i----htG~~~~~~~~~~~~~~p~~ 182 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQGFYPD-DPR------LYPIYEAAEELGVPVVI----HTGAGPGGAGLEKGHSDPLY 182 (293)
T ss_pred HHHHHHHHHHhcCceEEEecccccCCCCC-ChH------HHHHHHHHHHcCCCEEE----EeCCCCCCcccccCCCCchH
Confidence 4444455556789999988433 665553 122 89999999999999944 6422222222232 56667
Q ss_pred HHhhhccCCCeee
Q 010415 210 VMEIGQNNPEIYF 222 (511)
Q Consensus 210 V~e~g~~~PDI~f 222 (511)
+.++.++.|++-+
T Consensus 183 ~~~va~~fP~l~I 195 (293)
T COG2159 183 LDDVARKFPELKI 195 (293)
T ss_pred HHHHHHHCCCCcE
Confidence 7778889998644
No 297
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.15 E-value=3.7e+02 Score=29.04 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=70.1
Q ss_pred cceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchhHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 010415 119 LGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNV 198 (511)
Q Consensus 119 Ld~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdvWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvVmsFHqCGGNV 198 (511)
+-+|..-|.+.+++++-.-=+.+|++|+..+.-..|==..-+.+-+-..-.+++-|.+..++.||.+ +-..|
T Consensus 102 l~vIAGPCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~--~tev~------ 173 (352)
T PRK13396 102 VVVVAGPCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGI--ITEVM------ 173 (352)
T ss_pred EEEEEeCCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcE--EEeeC------
Confidence 4455567888999999999999999999998866653111111112233567999999999999999 55543
Q ss_pred CCCccCCCChhHHhhhccCCCeeeecCCCCcccceee-eccCccccc--cCCc
Q 010415 199 GDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLT-WGIDKERVL--RGRT 248 (511)
Q Consensus 199 GD~~~IpLP~WV~e~g~~~PDI~ftDr~G~rn~E~lS-l~~D~~pvl--~GRT 248 (511)
=|.-|-... +.-|++-.=-.--+|.+-|. .+--..||+ +|..
T Consensus 174 -------d~~~v~~~~-~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~ 218 (352)
T PRK13396 174 -------DAADLEKIA-EVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMA 218 (352)
T ss_pred -------CHHHHHHHH-hhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCC
Confidence 233333222 23566655444444444443 333456775 5555
No 298
>PF03799 FtsQ: Cell division protein FtsQ; InterPro: IPR005548 FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins, reviewed in []. The precise function of FtsQ is unknown.; PDB: 2VH1_B 2VH2_B 2ALJ_A 1YR1_A.
Probab=20.12 E-value=2e+02 Score=23.97 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=40.2
Q ss_pred CCCeeeecCCCCcccceeeeccCccccccCCchhHH-HHHHHHHHHHHHhhhhcCceEEEEEee
Q 010415 217 NPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEV-YFDYMRSFRVEFNEFFVDGIIAEIEVG 279 (511)
Q Consensus 217 ~PDI~ftDr~G~rn~E~lSl~~D~~pvl~GRTpi~~-Y~dfm~SF~~~f~~~~g~~~I~eI~VG 279 (511)
+-..++.|++|..-..-.. ..+.+|++.|-+.-+. -.++++.+..-...+.. .|++|.+.
T Consensus 7 ~~~~~lvd~~G~v~~~~~~-~~~~lP~i~g~~~~~~~~~~~~~~l~~~~~~~~~--~i~~i~~~ 67 (117)
T PF03799_consen 7 GGGYYLVDENGVVFEPEPE-PPPDLPLITGPEDSEKDLLELLRELAALPPPLRS--QISEISYD 67 (117)
T ss_dssp TTEEEEEETTS-EECCCCT-TTTTS-EEESSTTHHHHHHHHHHHHHHHHHHTTH--S-SEEEEE
T ss_pred CCceEEECCCCeEEecCCC-CCCCCeEEECCCCchHHHHHHHHHHHHHHHHHhc--eeeEEEEC
Confidence 3457899999998877322 4568999999886544 57777777766666554 58888653
Done!