Query 010416
Match_columns 511
No_of_seqs 181 out of 2496
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 00:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 1.3E-54 2.8E-59 451.3 50.3 398 33-440 5-412 (557)
2 PRK15049 L-asparagine permease 100.0 6E-53 1.3E-57 435.1 48.3 366 54-442 23-409 (499)
3 PRK11387 S-methylmethionine tr 100.0 1.5E-52 3.2E-57 431.5 45.7 425 54-503 9-459 (471)
4 PRK10249 phenylalanine transpo 100.0 4E-52 8.7E-57 426.1 46.2 390 53-471 15-425 (458)
5 PRK10238 aromatic amino acid t 100.0 1.2E-51 2.7E-56 422.2 46.7 422 53-501 6-448 (456)
6 PRK10746 putative transport pr 100.0 2E-51 4.4E-56 420.5 46.5 366 53-443 4-392 (461)
7 TIGR01773 GABAperm gamma-amino 100.0 1.9E-51 4.1E-56 422.1 45.6 368 54-446 7-395 (452)
8 TIGR00908 2A0305 ethanolamine 100.0 3E-51 6.4E-56 419.7 46.5 424 53-506 1-436 (442)
9 COG0833 LysP Amino acid transp 100.0 4.3E-52 9.4E-57 406.8 37.0 423 56-502 41-502 (541)
10 PRK10644 arginine:agmatin anti 100.0 1E-50 2.3E-55 415.4 45.0 421 54-507 3-435 (445)
11 PRK10836 lysine transporter; P 100.0 9.6E-51 2.1E-55 419.7 44.6 423 53-504 9-475 (489)
12 KOG1287 Amino acid transporter 100.0 9.9E-52 2.1E-56 403.3 35.1 421 53-498 6-438 (479)
13 PRK11049 D-alanine/D-serine/gl 100.0 2.7E-50 5.8E-55 414.2 46.5 424 53-505 14-465 (469)
14 PRK10655 potE putrescine trans 100.0 1.5E-50 3.3E-55 413.9 44.5 387 56-470 3-401 (438)
15 PRK10580 proY putative proline 100.0 3.2E-50 6.9E-55 412.9 46.4 426 53-504 3-451 (457)
16 PRK11357 frlA putative fructos 100.0 2.6E-50 5.7E-55 412.8 45.4 422 54-502 3-437 (445)
17 TIGR00909 2A0306 amino acid tr 100.0 1E-49 2.2E-54 407.4 47.4 383 57-447 1-384 (429)
18 TIGR00911 2A0308 L-type amino 100.0 1.9E-49 4.1E-54 412.0 46.4 398 53-475 36-445 (501)
19 COG1113 AnsP Gamma-aminobutyra 100.0 5.8E-50 1.3E-54 384.0 36.0 368 53-445 7-395 (462)
20 TIGR00905 2A0302 transporter, 100.0 4.4E-49 9.6E-54 405.9 45.0 419 57-503 5-439 (473)
21 TIGR00913 2A0310 amino acid pe 100.0 1.6E-48 3.4E-53 403.5 46.8 422 58-503 1-467 (478)
22 PRK10435 cadB lysine/cadaverin 100.0 1.4E-48 2.9E-53 398.1 44.6 359 56-437 2-377 (435)
23 PRK10197 gamma-aminobutyrate t 100.0 1.9E-48 4E-53 397.7 42.8 378 69-473 2-400 (446)
24 KOG1289 Amino acid transporter 100.0 4.6E-49 9.9E-54 384.5 34.1 442 50-508 39-518 (550)
25 KOG1286 Amino acid transporter 100.0 4.5E-49 9.7E-54 400.5 33.4 439 53-504 24-501 (554)
26 TIGR03810 arg_ornith_anti argi 100.0 3E-47 6.5E-52 391.8 44.8 363 59-441 1-382 (468)
27 PRK11021 putative transporter; 100.0 1.2E-46 2.7E-51 381.5 47.5 372 61-472 1-380 (410)
28 TIGR00907 2A0304 amino acid pe 100.0 3.7E-47 8E-52 393.5 44.1 381 51-446 4-415 (482)
29 TIGR03428 ureacarb_perm permea 100.0 1.6E-46 3.5E-51 387.1 45.3 381 51-440 5-403 (475)
30 TIGR00930 2a30 K-Cl cotranspor 100.0 4.9E-46 1.1E-50 402.6 44.5 403 53-473 70-516 (953)
31 TIGR03813 put_Glu_GABA_T putat 100.0 8.1E-44 1.7E-48 367.3 44.7 396 59-473 1-419 (474)
32 PF13520 AA_permease_2: Amino 100.0 8.7E-44 1.9E-48 363.8 33.1 362 61-445 1-381 (426)
33 TIGR00910 2A0307_GadC glutamat 100.0 2.7E-42 5.8E-47 356.3 44.4 395 57-473 2-422 (507)
34 COG0531 PotE Amino acid transp 100.0 7E-42 1.5E-46 354.3 45.6 379 53-449 6-399 (466)
35 PRK15238 inner membrane transp 100.0 3.6E-40 7.9E-45 341.5 45.3 379 56-449 4-431 (496)
36 PF00324 AA_permease: Amino ac 100.0 5.6E-44 1.2E-48 369.3 11.0 362 66-445 2-398 (478)
37 TIGR00837 araaP aromatic amino 100.0 1.2E-27 2.5E-32 240.6 30.5 356 68-454 4-372 (381)
38 KOG2082 K+/Cl- cotransporter K 100.0 1.2E-27 2.6E-32 237.6 23.6 426 60-503 113-648 (1075)
39 KOG1288 Amino acid transporter 100.0 3E-26 6.6E-31 226.0 26.1 395 60-471 66-499 (945)
40 TIGR00912 2A0309 spore germina 99.9 8.2E-23 1.8E-27 203.8 34.3 288 59-371 1-295 (359)
41 PHA02764 hypothetical protein; 99.9 3E-19 6.5E-24 162.4 26.3 275 52-392 5-285 (399)
42 PF03222 Trp_Tyr_perm: Tryptop 99.9 4.9E-18 1.1E-22 169.3 37.0 294 59-371 1-304 (394)
43 KOG2083 Na+/K+ symporter [Inor 99.9 4.3E-20 9.3E-25 181.7 20.6 393 55-472 24-444 (643)
44 TIGR00814 stp serine transport 99.9 3.8E-19 8.2E-24 176.8 27.7 288 66-374 8-313 (397)
45 TIGR00796 livcs branched-chain 99.8 9.6E-18 2.1E-22 164.4 34.5 333 71-446 5-361 (378)
46 PRK10483 tryptophan permease; 99.8 2.4E-17 5.2E-22 162.5 33.8 333 56-418 6-349 (414)
47 PRK09664 tryptophan permease T 99.8 1.5E-16 3.3E-21 156.7 35.1 328 62-418 10-350 (415)
48 PRK15132 tyrosine transporter 99.8 2.5E-16 5.5E-21 156.1 34.6 348 62-439 4-362 (403)
49 PRK13629 threonine/serine tran 99.8 2.6E-15 5.7E-20 148.0 33.2 374 68-471 26-439 (443)
50 COG0814 SdaC Amino acid permea 99.8 7.2E-15 1.6E-19 147.6 36.3 289 56-363 4-306 (415)
51 PF03845 Spore_permease: Spore 99.8 2.3E-15 5E-20 147.5 30.9 287 60-372 1-292 (320)
52 KOG1303 Amino acid transporter 99.6 1.6E-12 3.5E-17 129.6 28.7 357 53-436 30-398 (437)
53 PLN03074 auxin influx permease 99.5 2.6E-11 5.7E-16 123.8 31.3 239 58-321 43-294 (473)
54 PTZ00206 amino acid transporte 99.5 8.3E-11 1.8E-15 120.7 30.0 245 62-321 61-319 (467)
55 KOG1304 Amino acid transporter 99.4 3.3E-10 7.1E-15 111.4 30.9 379 54-472 40-443 (449)
56 PF01235 Na_Ala_symp: Sodium:a 99.4 5.2E-11 1.1E-15 117.3 24.8 294 54-372 12-338 (416)
57 PRK11375 allantoin permease; P 99.4 2.1E-08 4.6E-13 103.1 39.6 331 53-408 19-364 (484)
58 COG1115 AlsT Na+/alanine sympo 99.3 1.5E-08 3.2E-13 98.8 33.1 292 56-372 58-382 (452)
59 TIGR00835 agcS amino acid carr 99.3 1.6E-08 3.4E-13 100.5 30.9 287 58-372 44-365 (425)
60 COG3949 Uncharacterized membra 99.2 5.7E-08 1.2E-12 90.7 28.9 266 66-363 8-280 (349)
61 PF01490 Aa_trans: Transmembra 99.1 9.4E-12 2E-16 126.7 -3.3 355 59-442 1-377 (409)
62 COG1457 CodB Purine-cytosine p 99.0 4.8E-06 1E-10 82.8 36.4 243 94-370 54-299 (442)
63 COG1953 FUI1 Cytosine/uracil/t 99.0 8.5E-06 1.9E-10 81.2 36.5 290 53-356 33-338 (497)
64 PRK11017 codB cytosine permeas 99.0 8.7E-06 1.9E-10 82.3 36.8 218 58-306 8-230 (404)
65 TIGR00800 ncs1 NCS1 nucleoside 98.8 5.5E-05 1.2E-09 77.6 36.8 243 54-313 7-261 (442)
66 PRK09442 panF sodium/panthothe 98.8 0.00014 3E-09 75.6 38.5 283 58-367 40-346 (483)
67 TIGR02119 panF sodium/pantothe 98.7 0.00042 9E-09 71.9 39.2 283 58-367 39-345 (471)
68 PF05525 Branch_AA_trans: Bran 98.7 0.00034 7.3E-09 70.0 34.4 318 68-426 10-345 (427)
69 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.00094 2E-08 69.5 38.1 280 58-368 35-346 (487)
70 COG0733 Na+-dependent transpor 98.6 0.00029 6.3E-09 69.6 31.4 248 64-315 12-270 (439)
71 TIGR02358 thia_cytX probable h 98.6 0.0011 2.3E-08 66.8 37.8 246 93-372 30-276 (386)
72 TIGR00813 sss transporter, SSS 98.6 0.00023 5.1E-09 72.3 32.0 284 58-369 2-323 (407)
73 COG0591 PutP Na+/proline sympo 98.5 0.0031 6.8E-08 65.4 37.7 286 57-370 36-355 (493)
74 KOG1305 Amino acid transporter 98.4 2.3E-05 5E-10 78.3 19.6 251 58-323 3-259 (411)
75 PRK00701 manganese transport p 98.4 0.0027 5.8E-08 64.7 34.3 90 75-168 48-138 (439)
76 PLN00151 potassium transporter 98.4 0.00013 2.8E-09 76.9 24.8 286 198-504 275-580 (852)
77 COG1114 BrnQ Branched-chain am 98.4 0.0027 5.8E-08 62.0 31.5 281 63-369 7-305 (431)
78 PRK15433 branched-chain amino 98.3 0.0055 1.2E-07 61.4 32.4 277 68-370 15-308 (439)
79 COG1914 MntH Mn2+ and Fe2+ tra 98.3 0.0054 1.2E-07 61.3 31.7 109 58-170 14-123 (416)
80 PF00474 SSF: Sodium:solute sy 98.2 0.0001 2.3E-09 74.9 19.4 285 58-369 5-321 (406)
81 TIGR02711 symport_actP cation/ 98.2 0.013 2.7E-07 61.9 36.4 154 58-238 66-222 (549)
82 PF01566 Nramp: Natural resist 98.2 0.0036 7.8E-08 62.4 29.1 252 91-373 12-286 (358)
83 PRK10484 putative transporter; 98.2 0.014 3E-07 61.4 39.2 289 58-368 37-355 (523)
84 PRK12488 acetate permease; Pro 98.2 0.016 3.4E-07 61.2 38.8 154 58-238 66-222 (549)
85 PLN00150 potassium ion transpo 98.2 0.00082 1.8E-08 71.0 24.3 284 198-503 215-519 (779)
86 PRK09395 actP acetate permease 98.2 0.016 3.5E-07 61.2 37.2 154 57-237 67-223 (551)
87 TIGR03648 Na_symport_lg probab 98.1 0.019 4.1E-07 60.7 35.6 148 58-234 31-183 (552)
88 PRK15419 proline:sodium sympor 98.1 0.019 4.2E-07 60.0 39.6 155 58-238 39-202 (502)
89 PF02705 K_trans: K+ potassium 98.1 0.0024 5.1E-08 65.4 25.4 282 198-500 133-433 (534)
90 PF02133 Transp_cyt_pur: Perme 98.0 0.00016 3.5E-09 74.3 15.5 242 57-309 5-251 (440)
91 PLN00149 potassium transporter 98.0 0.011 2.4E-07 62.8 28.1 287 198-503 199-506 (779)
92 PRK10745 trkD potassium transp 97.8 0.011 2.3E-07 61.3 23.9 279 198-498 144-442 (622)
93 KOG4303 Vesicular inhibitory a 97.7 0.0003 6.4E-09 66.2 10.6 241 56-320 112-362 (524)
94 PF02028 BCCT: BCCT family tra 97.7 0.083 1.8E-06 54.3 33.9 355 58-439 72-484 (485)
95 PLN00148 potassium transporter 97.6 0.0085 1.8E-07 63.6 20.9 284 198-503 198-502 (785)
96 TIGR00794 kup potassium uptake 97.6 0.0074 1.6E-07 63.5 19.5 280 198-499 169-469 (688)
97 KOG2466 Uridine permease/thiam 97.5 0.024 5.1E-07 56.4 21.0 307 53-383 48-381 (572)
98 COG3158 Kup K+ transporter [In 96.6 0.58 1.2E-05 47.8 21.1 230 198-440 149-394 (627)
99 COG4147 DhlC Predicted symport 96.5 1 2.2E-05 45.3 29.2 184 106-314 88-291 (529)
100 TIGR01197 nramp NRAMP (natural 96.1 1.8 3.9E-05 43.5 33.3 43 329-371 282-324 (390)
101 COG4145 PanF Na+/panthothenate 95.8 2 4.2E-05 41.8 30.9 278 58-366 38-343 (473)
102 PRK09928 choline transport pro 95.8 3.3 7.1E-05 44.3 29.2 93 341-437 407-502 (679)
103 PRK09950 putative transporter; 95.8 2.9 6.3E-05 43.3 29.5 92 341-437 400-496 (506)
104 COG1292 BetT Choline-glycine b 95.3 4.1 9E-05 41.8 24.5 102 331-440 393-498 (537)
105 PF00209 SNF: Sodium:neurotran 94.6 7.2 0.00016 41.1 25.1 99 211-312 194-302 (523)
106 TIGR00842 bcct choline/carniti 93.6 9.6 0.00021 39.0 30.0 93 341-437 354-450 (453)
107 COG4146 Predicted symporter [G 92.8 10 0.00022 37.0 24.8 46 125-170 104-150 (571)
108 PRK03356 L-carnitine/gamma-but 92.3 16 0.00034 38.0 30.5 94 341-439 403-500 (504)
109 PF02554 CstA: Carbon starvati 90.7 18 0.0004 35.6 20.2 96 63-160 54-150 (376)
110 COG4025 Predicted membrane pro 88.5 7.5 0.00016 35.1 10.7 15 364-378 56-70 (284)
111 COG4858 Uncharacterized membra 86.0 20 0.00044 31.2 11.5 73 428-505 141-217 (226)
112 KOG2349 Na+:iodide/myo-inosito 85.9 11 0.00024 39.5 12.0 97 124-243 108-204 (585)
113 PF06570 DUF1129: Protein of u 81.5 28 0.00061 31.5 11.6 7 498-504 195-201 (206)
114 KOG3660 Sodium-neurotransmitte 79.7 93 0.002 33.4 23.5 57 62-118 39-100 (629)
115 PTZ00206 amino acid transporte 75.5 80 0.0017 32.7 14.3 56 327-382 121-176 (467)
116 PF14256 YwiC: YwiC-like prote 73.2 52 0.0011 27.2 10.1 46 396-441 8-53 (129)
117 PF12794 MscS_TM: Mechanosensi 67.3 1.3E+02 0.0029 29.6 17.5 38 278-315 28-69 (340)
118 COG1966 CstA Carbon starvation 67.2 1.7E+02 0.0036 30.7 35.2 99 64-163 55-153 (575)
119 COG2271 UhpC Sugar phosphate p 64.1 1.5E+02 0.0032 30.2 12.4 46 355-409 70-115 (448)
120 PF07301 DUF1453: Protein of u 63.5 30 0.00064 29.3 6.5 51 457-508 34-84 (148)
121 PF05297 Herpes_LMP1: Herpesvi 54.1 4.2 9.1E-05 37.7 0.0 38 452-489 135-172 (381)
122 PF03169 OPT: OPT oligopeptide 54.0 3.2E+02 0.0069 29.6 17.2 55 264-318 436-492 (624)
123 COG3949 Uncharacterized membra 47.7 2.8E+02 0.006 27.1 14.3 72 297-371 39-110 (349)
124 PF11998 DUF3493: Protein of u 47.6 93 0.002 22.9 6.1 39 278-316 6-44 (75)
125 PRK00968 tetrahydromethanopter 47.3 25 0.00055 31.3 3.7 33 281-313 203-236 (240)
126 PRK11281 hypothetical protein; 45.3 5.6E+02 0.012 29.9 16.5 30 281-310 527-560 (1113)
127 COG3247 HdeD Uncharacterized c 43.4 2.4E+02 0.0051 25.0 11.7 117 386-507 13-129 (185)
128 PRK10746 putative transport pr 40.7 1.5E+02 0.0032 30.7 8.9 16 484-499 433-448 (461)
129 PF01102 Glycophorin_A: Glycop 39.4 29 0.00062 28.4 2.7 12 494-505 83-94 (122)
130 PF09991 DUF2232: Predicted me 39.3 3.4E+02 0.0073 25.6 21.3 95 345-443 161-260 (290)
131 PF14007 YtpI: YtpI-like prote 38.1 1.8E+02 0.004 22.3 6.8 33 462-494 39-71 (89)
132 COG4060 MtrD Tetrahydromethano 37.6 44 0.00095 28.7 3.5 33 282-314 194-227 (230)
133 PF09930 DUF2162: Predicted tr 36.4 3.4E+02 0.0075 24.9 11.3 49 459-507 110-160 (224)
134 TIGR01432 QOXA cytochrome aa3 35.2 2.4E+02 0.0052 25.7 8.4 19 423-441 35-53 (217)
135 PF09874 DUF2101: Predicted me 33.3 3.6E+02 0.0077 24.2 9.5 25 481-505 117-141 (206)
136 PF06808 DctM: DctM-like trans 32.3 5.5E+02 0.012 26.1 13.8 46 337-382 90-136 (416)
137 PRK15433 branched-chain amino 31.8 5.8E+02 0.013 26.2 13.8 75 128-226 269-343 (439)
138 PLN02351 cytochromes b561 fami 27.3 5.1E+02 0.011 24.1 8.9 66 444-509 151-229 (242)
139 PF03596 Cad: Cadmium resistan 26.8 2.9E+02 0.0064 24.6 7.1 58 62-121 97-154 (191)
140 TIGR01478 STEVOR variant surfa 25.9 1E+02 0.0022 29.1 4.2 20 490-509 274-293 (295)
141 PRK09488 sdhD succinate dehydr 25.9 3.3E+02 0.0072 22.0 6.7 66 246-312 44-109 (115)
142 PF05545 FixQ: Cbb3-type cytoc 24.8 82 0.0018 20.9 2.6 15 489-503 20-34 (49)
143 TIGR02230 ATPase_gene1 F0F1-AT 23.8 1.8E+02 0.004 22.8 4.6 27 55-81 36-62 (100)
144 PF10067 DUF2306: Predicted me 23.6 1.2E+02 0.0026 23.8 3.8 14 490-503 54-67 (103)
145 PF03825 Nuc_H_symport: Nucleo 23.3 7.7E+02 0.017 24.8 13.1 24 383-406 59-82 (400)
146 PF06946 Phage_holin_5: Phage 22.7 3.7E+02 0.0079 20.8 7.7 37 452-489 33-69 (93)
147 PF05656 DUF805: Protein of un 22.4 4E+02 0.0088 21.2 8.8 22 423-446 55-76 (120)
148 PF04246 RseC_MucC: Positive r 22.4 2.8E+02 0.006 23.0 6.0 49 455-503 73-121 (135)
149 PTZ00370 STEVOR; Provisional 21.6 1.1E+02 0.0023 29.0 3.5 17 490-506 270-286 (296)
150 PF02411 MerT: MerT mercuric t 21.3 4.2E+02 0.0092 21.4 6.4 21 482-502 52-73 (116)
151 PTZ00382 Variant-specific surf 21.3 59 0.0013 25.3 1.5 14 490-503 82-95 (96)
152 cd03494 SQR_TypeC_SdhD Succina 21.2 4E+02 0.0088 20.7 7.0 63 247-310 31-93 (99)
153 COG3086 RseC Positive regulato 20.9 3.4E+02 0.0073 22.9 5.8 51 455-505 80-130 (150)
154 PRK14726 bifunctional preprote 20.9 8.8E+02 0.019 27.4 10.8 12 361-372 442-453 (855)
155 PF06645 SPC12: Microsomal sig 20.7 3.4E+02 0.0073 20.1 5.3 53 393-446 15-68 (76)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.3e-54 Score=451.32 Aligned_cols=398 Identities=40% Similarity=0.719 Sum_probs=344.3
Q ss_pred HHhhhhhhcccCCCccccCCCCCCcccccChhHHHHHHhcccccchhhhchhhhh-hhcCchHHHHHHHHHHHHHHHHHH
Q 010416 33 HFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALC 111 (511)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~-~~~G~~~~~~~ll~~~~~~~~~~~ 111 (511)
++.+++.|+++.++++ +++++++|+++.+|+++++++.++|+|+|..++... ..+||+.+++|+++++.+++.+++
T Consensus 5 ~~~~~~~r~k~~~~~~---~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~ 81 (557)
T TIGR00906 5 TFARCLIRRKIVDLDS---REESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFC 81 (557)
T ss_pred HHHHHHhccCCccccc---ccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 3445566666554321 235579999999999999999999999999999766 568999999999999999999999
Q ss_pred HHHHhhcCccccCcceehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccCCCccccCCCccc
Q 010416 112 YAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEF 190 (511)
Q Consensus 112 ~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 190 (511)
|+|+++++|+ +||.|.|+++.+|+.+||++||.+++.|....+..+..++.|+.++++. ...+. .+.... ..+.
T Consensus 82 yaElas~~P~-sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~--~~~~~~--~~~~ 156 (557)
T TIGR00906 82 YAEFGARVPK-AGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFR--RTYFKL--NYDG 156 (557)
T ss_pred HHHHHHhCCC-CCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--cccccc--cCCc
Confidence 9999999999 9999999999999999999999999999999999999999999886541 01000 000000 0000
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCC--------CCCCCChHHHH
Q 010416 191 LGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--------PFAPNGFKEIL 262 (511)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 262 (511)
.. ....+++.+++++.+.+|.+|+|..+++++++..++++.++++++.++.+.+.+||+ ++.|.++.+++
T Consensus 157 l~--~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l 234 (557)
T TIGR00906 157 LA--EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVL 234 (557)
T ss_pred cc--ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHH
Confidence 00 112456777788889999999999999999999999999988888888777767765 66677888899
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHH
Q 010416 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVS 342 (511)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (511)
.+...++|+|.|+|.+++++||+|||+||+||++..++.+++++|++.+++.....|+++.+.++|+.+.++..+.++..
T Consensus 235 ~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~ 314 (557)
T TIGR00906 235 SGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAK 314 (557)
T ss_pred HHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888788999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 010416 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT 422 (511)
Q Consensus 343 ~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (511)
.++.++.+.+.+++.++.+++.+|++++|||||.+|++|+|+|+|+++|++++++..+++.++.++.+++.+.++.+++.
T Consensus 315 ~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ 394 (557)
T TIGR00906 315 YIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGT 394 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999998899999999999999988888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 010416 423 LTGYSVVSACVIALRWKD 440 (511)
Q Consensus 423 ~~~~~~~~~~~l~~r~~~ 440 (511)
++.|.+.+++.+++|+++
T Consensus 395 ll~y~lv~~~~l~lR~~~ 412 (557)
T TIGR00906 395 LLAYSLVAACVLILRYQP 412 (557)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999999664
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=6e-53 Score=435.13 Aligned_cols=366 Identities=21% Similarity=0.367 Sum_probs=311.1
Q ss_pred CCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHH
Q 010416 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (511)
Q Consensus 54 ~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~ 133 (511)
++++||+++.+++.++++|++||+|+|..++..+..+||..+++|++++++.++.+.+++||++++|+ +||.|.|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~-aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPS-SGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Confidence 34599999999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHH
Q 010416 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (511)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (511)
+||.+||++||.+++.|....+......+.++.. ++.+ ...|. ...+.++++++..+|+
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~----~~~~-~~~~~----------------~~~~~~~~~l~~~iN~ 160 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHY----WGAF-GGVPQ----------------WVFALAALTIVGTMNM 160 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccC-CCCcH----------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999887665555555554432 1111 11233 3456778888999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhccc---ee--------ccCC---CCCCCCChHHHHHHHHHHHHHhhhhhhhh
Q 010416 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VD--------VSNW---SPFAPNGFKEILTGATVVFFAYVGFDAVA 279 (511)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~G~e~~~ 279 (511)
+|+|..++++.++..+|++.++++++.++.. .+ +.++ .++.|+++.+++.++....|+|.|+|.++
T Consensus 161 ~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~ 240 (499)
T PRK15049 161 IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVG 240 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999988777766554331 11 1111 23446677677778888999999999999
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Q 010416 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL 358 (511)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 358 (511)
+++||+|||+|++||++..++..+.++|+...++....+|.++.. ..+|+.++++..+.++...++.+..+++.+++.+
T Consensus 241 ~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~n 320 (499)
T PRK15049 241 TAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLN 320 (499)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988874 4578999999899888888999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHH
Q 010416 359 VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSAC 432 (511)
Q Consensus 359 ~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~ 432 (511)
+.++++||++++|||||.+|++|+|+|| +++|++|++++.+++.+..++. .++.+.++.++..++.|.+++++
T Consensus 321 s~~~~~sR~l~a~Ardg~lP~~f~kv~k-~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~ 399 (499)
T PRK15049 321 SGLYCTGRILRSMAMGGSAPSFMAKMSR-QHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVC 399 (499)
T ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 5999999999988865432221 47889999999999999999999
Q ss_pred HHHHhhcCCC
Q 010416 433 VIALRWKDRT 442 (511)
Q Consensus 433 ~l~~r~~~~~ 442 (511)
.+++|++.++
T Consensus 400 ~l~~R~~~~~ 409 (499)
T PRK15049 400 QMRLRKAIKE 409 (499)
T ss_pred HHHHHHhhhh
Confidence 9999876443
No 3
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=1.5e-52 Score=431.50 Aligned_cols=425 Identities=20% Similarity=0.312 Sum_probs=337.3
Q ss_pred CCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHH
Q 010416 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (511)
Q Consensus 54 ~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~ 132 (511)
++++||+++.++..++++|.++|+|+|..++.+++.+|| +.+++|+++++++++.+++++||++++|+ +||.|.|+++
T Consensus 9 ~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aGG~y~y~~~ 87 (471)
T PRK11387 9 AGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TGAFHVYAAR 87 (471)
T ss_pred chhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 456899999999999999999999999999999999998 59999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
.+||.+||.+||.+|++|....+......+.++.. +.| ..|.| ...+++.+++..+|
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~p----~~~~~----------------~~~~~~~~~~~~in 144 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQY---WFP----QVPVW----------------PWCLLFCALIFGLN 144 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccC----cCcHH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999988877666555554433 222 22332 33445567788999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce-------e------ccCC--CCCCCCChHHHHHHHHHHHHHhhhhhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------D------VSNW--SPFAPNGFKEILTGATVVFFAYVGFDA 277 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~G~e~ 277 (511)
++|+|..++++.....+|++.++++++.++... + ++++ +++.|++..+++.++..+.|+|.|+|.
T Consensus 145 ~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~ 224 (471)
T PRK11387 145 VVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTEL 224 (471)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999998888776666543210 0 1111 133355666788899999999999999
Q ss_pred hhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHH
Q 010416 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (511)
Q Consensus 278 ~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 356 (511)
+++++||+|||+||+||++..+..++.++|++..+++....|.++.. .++|+.+++++.++++...++.+..+.+++++
T Consensus 225 ~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~ 304 (471)
T PRK11387 225 IGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSA 304 (471)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888887764 45789999999998998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHH
Q 010416 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVS 430 (511)
Q Consensus 357 ~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~ 430 (511)
.++.+++.||++++|||||.+|++|+|+||+ ++|++|+++..++..+..+.. .++.+.++.++..++.|++.+
T Consensus 305 ~~~~~~~~sR~l~a~ardg~lP~~f~~~~~~-~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~ 383 (471)
T PRK11387 305 ANSGLYASGRMLWSLSNEGTLPACFARLTKR-GIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSIC 383 (471)
T ss_pred HHHHHHHhhHHHHHHHhcCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999974 999999998876654433321 245677888889999999999
Q ss_pred HHHHHHhhcCCCCCCC-CcccccchhhHHHHHHHHHHHHHHHhhh-hcccc-hHHHHHHHHHHHHHHHHhhhcccc
Q 010416 431 ACVIALRWKDRTSRND-SSRLTSAWRQGVICLIIIACCGFGAGLF-YRINA-SYILLIVAVVIAVLASAMLCLRHV 503 (511)
Q Consensus 431 ~~~l~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511)
++.+++|+|+++..++ .+++++.+.....+.++++.+.+.+... +.... ...+....+++++...|++++|++
T Consensus 384 ~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (471)
T PRK11387 384 ASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRLK 459 (471)
T ss_pred HHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999887755432 1223344344455666666555544332 22222 223566666677777777665543
No 4
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=4e-52 Score=426.11 Aligned_cols=390 Identities=20% Similarity=0.345 Sum_probs=324.8
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHH
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~ 132 (511)
+++++||+++.+|+.++++|+++|+|+|..++.+++.+||.++++|++++++.++.+++++|+++++|+ +||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHH
Confidence 455799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
.+||.+|+++||.+|+.+....+......+.++.. +.| ..|. ..+..+++++...+|
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~---~~~----~~~~----------------~~~~~~~~~l~~~lN 150 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQY---WFP----DVPT----------------WIWAAAFFIIINAVN 150 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCC----cCcH----------------HHHHHHHHHHHHHHH
Confidence 99999999999999999988777776666666654 222 2232 345677888899999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc---e------eccC-CC--CCCCCChHHHHHHHHHHHHHhhhhhhhhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---V------DVSN-WS--PFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~------~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (511)
++|+|..++++..+..+|++.++++++.++.. . ++++ ++ ++.++++.+++.++....|+|.|+|.+++
T Consensus 151 ~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 230 (458)
T PRK10249 151 LVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGI 230 (458)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999987766665544321 1 1111 11 23456788899999999999999999999
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Q 010416 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (511)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 359 (511)
++||+|||+|++||++..+.....++|++..+......|+++... ++|+.++++..++++...++.+..+.+.+++.++
T Consensus 231 ~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 310 (458)
T PRK10249 231 TAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNS 310 (458)
T ss_pred HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888888877643 5799999988888888888888999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACV 433 (511)
Q Consensus 360 ~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~ 433 (511)
.+++++|++++|||||.+|++|+|+|| +++|++|++++.+++.+..+.. .++.+.++.+...++.|.+++++.
T Consensus 311 ~~~~~sR~l~a~ardg~lP~~~~kv~~-~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 389 (458)
T PRK10249 311 GVYSNSRMLFGLSVQGNAPKFLTRVSR-RGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAH 389 (458)
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 4999999999999987665543 477888999999999999999999
Q ss_pred HHHhhcCC--CCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 010416 434 IALRWKDR--TSRNDSSRLTSAWRQGVICLIIIACCGFGA 471 (511)
Q Consensus 434 l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (511)
+++|++++ +.+||+ +.+..+....++++.+.+..
T Consensus 390 l~~r~~~~~~~~~~p~----~~~~~p~~~~~~l~~~~~~~ 425 (458)
T PRK10249 390 LRFRAAMRRQGRETQF----KALLYPFGNYLCIAFLGMIL 425 (458)
T ss_pred HHHHHHHHhcCCCCCc----cCCCccHHHHHHHHHHHHHH
Confidence 99987433 333433 23334444444444444433
No 5
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.2e-51 Score=422.23 Aligned_cols=422 Identities=20% Similarity=0.352 Sum_probs=340.9
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHH
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~ 132 (511)
.++++||+++.+|..+++++++||+|+|..++...+.+||+.+++|++++++.++.+++++|+++++|. +||.|+|++|
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPV-AGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 455799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
.+||..||..||.++++|....++.....++++.. .+| ..|.| ....+++++...+|
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~---~~p----~~~~~----------------~~~~i~~~~~~~lN 141 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQF---WYP----EIPTW----------------VSAAVFFVVINAIN 141 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC----cCcHH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999999988888888887765 222 23333 34566678899999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc--ce-------eccCC---CCCCCCChHHHHHHHHHHHHHhhhhhhhhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF--EV-------DVSNW---SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (511)
++|+|..++++.+...+|++.++++++.++. .. ...++ .++.|+++.++..++..+.|+|.|+|.+++
T Consensus 142 ~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 221 (456)
T PRK10238 142 LTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGI 221 (456)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999998877665553321 11 11111 124466777788888889999999999999
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Q 010416 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (511)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 359 (511)
.+||+|||+|++||++..+.....++|+..........|.++.. .++|+.++++..+.++...++.+..+.+.+++.++
T Consensus 222 ~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~ 301 (456)
T PRK10238 222 TAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNS 301 (456)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877777778888764 35789998888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACV 433 (511)
Q Consensus 360 ~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~ 433 (511)
.++++||++++|||||.+|++|+|+||+ ++|++|++++.+++.+..++. .++.+.++.+.+.++.|.++.++.
T Consensus 302 ~~~~~sR~l~a~ardg~lP~~f~kv~~~-~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 380 (456)
T PRK10238 302 CVYCNSRMLFGLAQQGNAPKALASVDKR-GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAH 380 (456)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 999999999999987765542 478889999999999999999999
Q ss_pred HHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhhh-hccc-chHHHHHHHHHHHHHHHHhhhcc
Q 010416 434 IALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLF-YRIN-ASYILLIVAVVIAVLASAMLCLR 501 (511)
Q Consensus 434 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 501 (511)
+++||+++++.+++ +++.+..+....++++.+.+..... +.++ ....|.....+++..+.|++++|
T Consensus 381 l~~r~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (456)
T PRK10238 381 MKFRRAKQEQGVVT--RFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEK 448 (456)
T ss_pred HHHHHHHHhcCCCC--CCcCCCccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998877654222 2233233344444444443333222 2222 23346665555666666665443
No 6
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=2e-51 Score=420.51 Aligned_cols=366 Identities=22% Similarity=0.333 Sum_probs=314.5
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHH
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~ 132 (511)
.++++||+++.+|..++++|++||+|+|..++..++.+||+.+++|++++++.++++.+++||++++|+ +||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 356799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
.+||.+|+.+||.+|+.|....+......+.++.. ++| ..|.| ....+++++...+|
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~---~~p----~~~~~----------------~~~~~~~~~~~~lN 139 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQF---WFP----EMAQW----------------IPALIAVALVALAN 139 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccC----CCchH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999988888877777777655 323 23333 34556677888899
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc-----------eeccCCC---CCCCCChHHHHHHHHHHHHHhhhhhhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-----------VDVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAV 278 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (511)
++|+|..++++...+.+|++.++++++.++.. .+++|+. ++.++++.++..++..+.|+|.|+|.+
T Consensus 140 ~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v 219 (461)
T PRK10746 140 LAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELI 219 (461)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999988776666544321 1123432 244667888999999999999999999
Q ss_pred hhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Q 010416 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (511)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 357 (511)
++.+||+|||+|++||++..+...+.++|++..++.....|+++... ++|+.+.+++.+.+....++++..+.+.+++.
T Consensus 220 ~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~ 299 (461)
T PRK10746 220 GITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGC 299 (461)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999998764 56999999888888777888899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHH---hhh-----cHHHHHHHHHHHHHHHHHHH
Q 010416 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA---GLF-----NVRVLSHILSVGTLTGYSVV 429 (511)
Q Consensus 358 ~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~---~~~-----~~~~l~~~~~~~~~~~~~~~ 429 (511)
++.++++||++++|||||.+|++|+|+|| +++|++|++++.+...+.. +.. .++.+.++.+++.++.|.+.
T Consensus 300 n~~~~~~sR~l~~~a~~g~lP~~~~~~~~-~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i 378 (461)
T PRK10746 300 NSGMYSCGRMLYALAKNRQLPAAMAKVSR-HGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVI 378 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 5999999998865433211 111 36788899999999999999
Q ss_pred HHHHHHHhhcCCCC
Q 010416 430 SACVIALRWKDRTS 443 (511)
Q Consensus 430 ~~~~l~~r~~~~~~ 443 (511)
+++.+++|+++|+.
T Consensus 379 ~~~~i~~r~~~~~~ 392 (461)
T PRK10746 379 LISQLRFRRAHKAA 392 (461)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999988763
No 7
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.9e-51 Score=422.07 Aligned_cols=368 Identities=22% Similarity=0.346 Sum_probs=315.9
Q ss_pred CCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHH
Q 010416 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (511)
Q Consensus 54 ~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~ 133 (511)
+.++||+++.+|..+++++.++|+|+|..++..+..+||..+++|++++++.++.+++++||++++|+ +||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPD-TGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence 55689999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHH
Q 010416 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (511)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (511)
+||.+|++.||.+++++....++.....+.++.. ++| ..|. ..++.+++++...+|+
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~---~~~----~~~~----------------~~~~~~~~~~~~~~n~ 142 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQY---WFP----DIPL----------------WLFSLILTIVLTLTNL 142 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC----cCcH----------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888877765 322 2233 3567788888899999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhccc---e----e---ccCC---CCCCCCChHHHHHHHHHHHHHhhhhhhhhh
Q 010416 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---V----D---VSNW---SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (511)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~----~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (511)
+|.|..++++.+...+|++.++.+++.++.. . + +.++ .++.|+++.+++.++..+.|+|.|+|.+++
T Consensus 143 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~ 222 (452)
T TIGR01773 143 YSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTI 222 (452)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhH
Confidence 9999999999999999998777666554321 0 1 1121 124466777899999999999999999999
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC--CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Q 010416 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL 358 (511)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 358 (511)
++||+|||+|++||++..+.....++|++.........|.++.+ +..|+.+..+..++++...++.+..+++++++.+
T Consensus 223 ~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~ 302 (452)
T TIGR01773 223 AAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLN 302 (452)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777777766543 2347888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHH
Q 010416 359 VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSAC 432 (511)
Q Consensus 359 ~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~ 432 (511)
+.+++++|++++|||||.+|++|+|+|| +++|++|+++..+++.+..+.. .++.+.++.+...++.|.+.+++
T Consensus 303 ~~~~~~sR~~~a~ardg~lP~~~~~v~~-~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~ 381 (452)
T TIGR01773 303 SALYTTSRMLYSLAERGDAPRVFMKLNK-KGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVS 381 (452)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997 5999999999998887665542 25677888888889999999999
Q ss_pred HHHHhhcCCCCCCC
Q 010416 433 VIALRWKDRTSRND 446 (511)
Q Consensus 433 ~l~~r~~~~~~~~~ 446 (511)
.+++|+|+|+.+|+
T Consensus 382 ~i~~r~~~~~~~~~ 395 (452)
T TIGR01773 382 QLRMRKKLKANGEA 395 (452)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999887776665
No 8
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=3e-51 Score=419.68 Aligned_cols=424 Identities=24% Similarity=0.342 Sum_probs=338.4
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhH
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~ 131 (511)
|++++||+++.++.++++++.++| |.+...+..+..+||. .++++++++++.++.+++++|+++++|+ +||.|.|++
T Consensus 1 ~~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~Gg~y~~~~ 78 (442)
T TIGR00908 1 QHRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AGGGYGFAR 78 (442)
T ss_pred CCchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHH
Confidence 366799999999999999999997 7777777778888985 8899999999999999999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHH
Q 010416 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (511)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 211 (511)
+.+||..|+.+||.+++.+....+.++..+++++... +| ..+. ...+.+++++...+
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~---~p----~~~~----------------~~~~~~~~~~~~~l 135 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESL---FP----VGPG----------------WLAALVFYIVFIGI 135 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc----cCch----------------hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988773 33 2222 24566777888999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCC--------CCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 010416 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW--------SPFAPNGFKEILTGATVVFFAYVGFDAVANSAE 283 (511)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~ 283 (511)
|++|+|..++++.+...++++.++++......+.+..++ +++.+.++.+++.++..+.|+|.|+|.+++++|
T Consensus 136 n~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~ae 215 (442)
T TIGR00908 136 NILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAE 215 (442)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887766555443322222121 234455666888899999999999999999999
Q ss_pred hhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcch--hHHHHHHHHHHHHHHHHHHHHH
Q 010416 284 ESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGL--KYVSVLISFGAVAGLTTTLLVG 360 (511)
Q Consensus 284 E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~ 360 (511)
|+|||+||+||++..+..++.++|+..........+.+++. .++|+.+.++...+ .+...++.+..+++.+++.++.
T Consensus 216 E~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~ 295 (442)
T TIGR00908 216 ETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGI 295 (442)
T ss_pred HhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877666666666653 45688888876532 3556666777778888899999
Q ss_pred HHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010416 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (511)
Q Consensus 361 ~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~ 440 (511)
+++.+|++++|||||.+|++|+|+| |+++|++|++++.+++.++.+..+.+.+.++.++...+.|.+.+++++++|+|+
T Consensus 296 ~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~ 374 (442)
T TIGR00908 296 IYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRR 374 (442)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999 579999999999999988777777778888889999999999999999999999
Q ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhcccccCC
Q 010416 441 RTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYK 506 (511)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (511)
|+.+||++.+.. ...+.++++.+++++...+..+.........+.++..+.|.+++|+|+++
T Consensus 375 p~~~rp~~~p~~----~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 375 PDMERPYRTPGG----ILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred CCCCCCccCCCc----chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 888877543333 34445555555555444333222222224555566666677766555544
No 9
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-52 Score=406.84 Aligned_cols=423 Identities=20% Similarity=0.285 Sum_probs=364.2
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHh
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~ 134 (511)
++||+|+.+|+.++++|+.||+|+|+..+..+..+||+ ++++|++.+++.+++..++.||+..+|. +|+...|++|-.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhc
Confidence 69999999999999999999999999999999999995 9999999999999999999999999998 999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
+|-+||..||.||+.|....+....+.+..++. +.| +..|.| ....+++++..++|.+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~y---W~p---~~v~~~----------------~w~~iF~~~i~~iN~~ 177 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQY---WFP---DTVPPW----------------IWIAIFLVLIFLLNLF 177 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh---hcC---CCCChH----------------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999998888886665 222 122554 4567788889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccce----------eccCCC--CCCCCChHHHHHHHHHHHHHhhhhhhhhhhh
Q 010416 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------DVSNWS--PFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (511)
++|.++..+..+..+|++.++.+++.+++.. +++.|+ ..+++|+.+++..+..+.|+|.|.|.+.--+
T Consensus 178 ~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaA 257 (541)
T COG0833 178 GVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAA 257 (541)
T ss_pred cccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeee
Confidence 9999999999999999999999998876532 122333 3457889999999999999999999999999
Q ss_pred hhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---------CCChHHHHHHHcchhHHHHHHHHHHHHHH
Q 010416 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (511)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 353 (511)
+|.|||+|++|||+.-.+....++|++..+.+...+|++|.. ..+|+..++++.|.+..+.+++.+.+.+.
T Consensus 258 gEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~sv 337 (541)
T COG0833 258 GESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSV 337 (541)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998832 35699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHH
Q 010416 354 TTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYS 427 (511)
Q Consensus 354 ~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~ 427 (511)
+++.|+.++++||++++||+||..||+|+|+||+ |+|.+|++++.+++++-.+-. .++++.++.+++..+.|.
T Consensus 338 lSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~-GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~ 416 (541)
T COG0833 338 LSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRR-GVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWG 416 (541)
T ss_pred HHHhhccchHHHHHHHHHHhcCCCchHHHhhCCC-CCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 999999999988885543332 478999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCC-cccccchhhHHHHHHHHHHHHHHHhh----hhccc-----c-hHHHHHHHHHHHHHHHH
Q 010416 428 VVSACVIALRWKDRTSRNDS-SRLTSAWRQGVICLIIIACCGFGAGL----FYRIN-----A-SYILLIVAVVIAVLASA 496 (511)
Q Consensus 428 ~~~~~~l~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~-~~~~~~~~~~~~~~~~~ 496 (511)
..+++.+++|+..+.+.|.. .-+++.+..+..+..+++.|..++.. .+.+. + ...|+.+.++++..++|
T Consensus 417 ~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~y 496 (541)
T COG0833 417 SICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGY 496 (541)
T ss_pred HHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998776665542 34555555556666666666555443 11111 2 24599999999999999
Q ss_pred hhhccc
Q 010416 497 MLCLRH 502 (511)
Q Consensus 497 ~~~~~~ 502 (511)
++++|.
T Consensus 497 k~~~k~ 502 (541)
T COG0833 497 KLYKKT 502 (541)
T ss_pred eeEecc
Confidence 988773
No 10
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=1e-50 Score=415.43 Aligned_cols=421 Identities=22% Similarity=0.329 Sum_probs=335.3
Q ss_pred CCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHH
Q 010416 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (511)
Q Consensus 54 ~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~ 133 (511)
+++++|+++.++.+++.++.++|+|+|..++..... |+..+++|+++++..++.+++++|+++++|+ +||.|.|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-GGIAIYGWLVTIIGALGLSMVYAKMSSLDPS-PGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHHH
Confidence 455789999999999999999999999999987665 5568899999999999999999999999999 99999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHH
Q 010416 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (511)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (511)
+||.+||++||.+++.+.............+... ++|.. .++| ...+++.+++++++.+|.
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~-------------~~~~~~~~~~~~~~~ln~ 141 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSY---FFPIL---KDPL-------------VLTITCVVVLWIFVLLNI 141 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhccc---CCcH-------------HHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887766666555566654 22321 1111 224567778888999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCC-CCC---CChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCC
Q 010416 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAP---NGFKEILTGATVVFFAYVGFDAVANSAEESKKPQ 289 (511)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 289 (511)
+|.|..+++|++.+.++++.++++.+.++...+.+++.+ +.+ +++.++..++....|+|.|+|.+++++||+|||+
T Consensus 142 ~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~ 221 (445)
T PRK10644 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK 221 (445)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc
Confidence 999999999999999999888877776655443333322 211 2345677788899999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 290 RDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (511)
Q Consensus 290 k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 368 (511)
|++||++..+..++.++|++..++.....|+++.. .+.|+.++.+...+++...++.+..+++++++.++.+...+|++
T Consensus 222 r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~ 301 (445)
T PRK10644 222 RNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887754 45788888887777777777788888889999999999999999
Q ss_pred HHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh-------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010416 369 LGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (511)
Q Consensus 369 ~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~ 441 (511)
++|+|||.+|++|+|+|| +++|++|++++.+++.++.+.. .++.+.++.++..++.|.+++++.+++|+|++
T Consensus 302 ~a~ardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~ 380 (445)
T PRK10644 302 KAAADDGLFPPIFARVNK-AGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_pred HHHHhCCCccHHHHhhCc-CCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999998 5999999999999987766542 47888999999999999999999999998876
Q ss_pred CCCCCCcccccchhhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhcccccCCc
Q 010416 442 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYKP 507 (511)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (511)
+.+|| .....+.++++.+++.+... .....++.... +.++...|++.+++|+++|
T Consensus 381 ~~~~p--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~ 435 (445)
T PRK10644 381 GKARP--------AYLAVTLIAFVYCIWAVVGS--GAKEVMWSFVT-LMVITAFYALNYNRLHKNP 435 (445)
T ss_pred ccccc--------chhHHHHHHHHHHHHHHHHh--hHHHHHHHHHH-HHHHHHHHHHHHHhhcCCC
Confidence 53332 12355666666666665421 12223333333 4455555665555555544
No 11
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=9.6e-51 Score=419.69 Aligned_cols=423 Identities=20% Similarity=0.276 Sum_probs=328.7
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhH
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~ 131 (511)
+++++||+++.++..++++|++||+|+|..++.++..+||+ .+++|+++++++++.+++++|+++++|+ +||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHH
Confidence 56779999999999999999999999999999999999996 8999999999999999999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHH
Q 010416 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (511)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 211 (511)
+.+|+.+|+++||.+++.+....+........++.. +.| ..|.| ....+++++...+
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~---~~~----~~~~~----------------~~~~~~~~~~~~l 144 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSW---WFP----DTPGW----------------IWSALFLGVIFLL 144 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCC----CCchH----------------HHHHHHHHHHHHH
Confidence 999999999999999998766655433333222222 112 22222 3355666678899
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc------e----eccCCCC---CCCCChHHHHHHHHHHHHHhhhhhhh
Q 010416 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE------V----DVSNWSP---FAPNGFKEILTGATVVFFAYVGFDAV 278 (511)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (511)
|++|+|..++++.++...|+..++.+++.++.. . +++|+.+ ..++++.+++.+.....|+|.|+|.+
T Consensus 145 N~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~ 224 (489)
T PRK10836 145 NYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELI 224 (489)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHH
Confidence 999999999999999999987776665543321 1 1223321 11345656666666678999999999
Q ss_pred hhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---------CCChHHHHHHHcchhHHHHHHHHHH
Q 010416 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGA 349 (511)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (511)
++++||+|||+||+||++..++..+.++|++..+......|.++.+ ..+|+...++..+.++...++.+..
T Consensus 225 ~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~i 304 (489)
T PRK10836 225 GIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVI 304 (489)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHH
Confidence 9999999999999999999999999999999999988888866532 1367888888888777788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHH
Q 010416 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTL 423 (511)
Q Consensus 350 ~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~ 423 (511)
+.+.+++.++.+++.+|++++|||||.+|++|+|+||+ ++|++|++++.+++.+..+.. .++.+.++.++..+
T Consensus 305 l~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~-~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 383 (489)
T PRK10836 305 LTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRG-GVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGF 383 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 999999999999887765542 25668888899999
Q ss_pred HHHHHHHHHHHHHhhcC----CCCC-CCCcccccchhhHHHHHHHHHHHHHHHhhhhc----cc--c---h-HHHHHHHH
Q 010416 424 TGYSVVSACVIALRWKD----RTSR-NDSSRLTSAWRQGVICLIIIACCGFGAGLFYR----IN--A---S-YILLIVAV 488 (511)
Q Consensus 424 ~~~~~~~~~~l~~r~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~---~-~~~~~~~~ 488 (511)
+.|.+.+++.+++|++. ++.+ || ++.+.....+.++++.|.+++..... .+ + . ..++...+
T Consensus 384 ~~y~~~~~a~l~~R~~~~~~~~~~~~~p----~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 459 (489)
T PRK10836 384 IAWLGIAISHYRFRRGYVLQGHDLNDLP----YRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIDWGGVAATYIGIPL 459 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCC----CcCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Confidence 99999999999999863 3333 33 34444445555555555555443211 11 1 1 22444555
Q ss_pred HHHHHHHHhhhccccc
Q 010416 489 VIAVLASAMLCLRHVS 504 (511)
Q Consensus 489 ~~~~~~~~~~~~~~~~ 504 (511)
.++..+.|++++|+|+
T Consensus 460 ~~~~~~~~~~~~~~~~ 475 (489)
T PRK10836 460 FLIIWFGYKLIKGTHF 475 (489)
T ss_pred HHHHHHHHHheecCCc
Confidence 5666677777666554
No 12
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-52 Score=403.29 Aligned_cols=421 Identities=25% Similarity=0.388 Sum_probs=355.8
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehh
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~ 130 (511)
++.++|||++.++.+.+.+++++|+|+|..|..++.++|+ + ++..|++.++++.+-+++|+||++.+|+ +||+|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk-sGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK-SGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCcchhhH
Confidence 4566899999999999999999999999999999999997 4 9999999999999999999999999999 99999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHH
Q 010416 131 YTAFNELTAFLVFAQLMLDYHIG-AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (511)
Q Consensus 131 ~~~~g~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (511)
.+.+||.++|...|..++..... .+..+..+++|+..- .+| ....|.+ ...+++.+++++++
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p--~fp--~c~~p~~-------------~~~lla~~~l~~lt 147 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKP--FFP--LCDVPRV-------------ASKLLAAALLVLLT 147 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc--cCC--CCCCchH-------------HHHHHHHHHHHHHH
Confidence 99999999999999987765555 488899999994331 223 1122222 33788999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccee---ccCCCCC-C---CCChHHHHHHHHHHHHHhhhhhhhhhhh
Q 010416 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---VSNWSPF-A---PNGFKEILTGATVVFFAYVGFDAVANSA 282 (511)
Q Consensus 210 ~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~-~---~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (511)
++|+.++|...++|.+++..|++.+.++++.++...- .+|+... + ..+...+..++....|+|.|||...+++
T Consensus 148 ~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vt 227 (479)
T KOG1287|consen 148 LINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVT 227 (479)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccch
Confidence 9999999999999999999999999999998887532 2222211 1 1234468889999999999999999999
Q ss_pred hhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010416 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFA-SRGLKYVSVLISFGAVAGLTTTLLVGL 361 (511)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 361 (511)
||+|||+||+|||+.+++.++++.|++++++...+++.||...++.+...+. ..+|.+. +++.+.+.++++++.++.+
T Consensus 228 eEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~i 306 (479)
T KOG1287|consen 228 EEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVI 306 (479)
T ss_pred HhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999999999999999999999866666666564 5555555 8899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010416 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (511)
Q Consensus 362 ~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~ 441 (511)
.++||+++++||+|++|+.|++.|++..+|.-+++++...+.+..+..+++.+++..++...+.+.+..++.+++|+|||
T Consensus 307 fs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p 386 (479)
T KOG1287|consen 307 FSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHP 386 (479)
T ss_pred HHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999998779999999999999999999899999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHHHHHHHHHHHHHHhhhhccc-chHHHHHHHHHHHHHHHHhh
Q 010416 442 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRIN-ASYILLIVAVVIAVLASAML 498 (511)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 498 (511)
+.+||. ...+..+++..+++.+.+..+...+ +....+.+..++.+...|.+
T Consensus 387 ~~~rPi------Kvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~ 438 (479)
T KOG1287|consen 387 PLPRPI------KVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFL 438 (479)
T ss_pred CCCCCE------eeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheE
Confidence 988863 3345567777778888877776666 33333333444444444443
No 13
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=2.7e-50 Score=414.23 Aligned_cols=424 Identities=17% Similarity=0.293 Sum_probs=336.7
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHH
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~ 132 (511)
+++++||+++.++..++++|++||+|+|..++..+..+||+.+++|++++++.++.+.+++|+++..|. .|+.|.|+++
T Consensus 14 ~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~ 92 (469)
T PRK11049 14 AEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASD 92 (469)
T ss_pred cchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHH
Confidence 345699999999999999999999999999999999999998999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
.+||..||++||.+++++....++.+...+.++.. ++| ..+. ...+.++++++..+|
T Consensus 93 ~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~---~~p----~~~~----------------~~~~~~~~~~~~~iN 149 (469)
T PRK11049 93 LLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQF---WFP----DLSD----------------WVASLAVVLLLLSLN 149 (469)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC----CCcH----------------HHHHHHHHHHHHHHH
Confidence 99999999999999999987777777777777655 223 1122 234556777889999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce-----ec----cCC------CCCCCCChHHHHHHHHHHHHHhhhhhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-----DV----SNW------SPFAPNGFKEILTGATVVFFAYVGFDA 277 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~----~~~------~~~~~~~~~~~~~~~~~~~~~~~G~e~ 277 (511)
++|.|..+++|.+...+|++.++++++.++... +. .++ .++.|+++.+++.++....|+|.|+|.
T Consensus 150 ~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~ 229 (469)
T PRK11049 150 LATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIEL 229 (469)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHH
Confidence 999999999999999999988888777655421 00 111 124466777899999999999999999
Q ss_pred hhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHH
Q 010416 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (511)
Q Consensus 278 ~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 356 (511)
+++++||+|||+|++||++..+.+...++|++.........|.++... ++|+.+.++..++++...++.+..+++.+++
T Consensus 230 ~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~ 309 (469)
T PRK11049 230 VGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASS 309 (469)
T ss_pred HHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888999999999998888888887743 4788888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHH---hhh-----cHHHHHHHHHHHHHHHHHH
Q 010416 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA---GLF-----NVRVLSHILSVGTLTGYSV 428 (511)
Q Consensus 357 ~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~---~~~-----~~~~l~~~~~~~~~~~~~~ 428 (511)
.++.+.+.+|++++|+|||.+|++|+|+||| ++|++|++++.++..+.. ... .++.+.++.++...+.|.+
T Consensus 310 ~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~ 388 (469)
T PRK11049 310 ANSGVFSTSRMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTI 388 (469)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 999999999877654311 111 3677788888889999999
Q ss_pred HHHHHHHHhhcCCCCCC--CCcccccchhhHHHHHHHHHHHHHHHhh-hhcccchHHHHHHHH-HHHHHHHHhhhccccc
Q 010416 429 VSACVIALRWKDRTSRN--DSSRLTSAWRQGVICLIIIACCGFGAGL-FYRINASYILLIVAV-VIAVLASAMLCLRHVS 504 (511)
Q Consensus 429 ~~~~~l~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 504 (511)
++++++++|+|+|+.+| |++.+.+ ...+.++++.+.+.+.. .+..++...+..... +++..++|++++|+|.
T Consensus 389 ~~~a~~~lr~~~p~~~~~~pf~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (469)
T PRK11049 389 ILCSYLVYRKQRPHLHEKSIYKMPLG----KLMCWVCMAFFAFVLVLLTLEDDTRQALIVTPLWFIALGLGYLFIGKKRA 464 (469)
T ss_pred HHHHHHHHHHhhhhcCCCCCccCcCc----chHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999999888764 3333222 23333333333333222 233233223333333 3446666777665554
Q ss_pred C
Q 010416 505 Y 505 (511)
Q Consensus 505 ~ 505 (511)
.
T Consensus 465 ~ 465 (469)
T PRK11049 465 A 465 (469)
T ss_pred h
Confidence 3
No 14
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.5e-50 Score=413.90 Aligned_cols=387 Identities=20% Similarity=0.306 Sum_probs=320.8
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhc
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g 135 (511)
++||+++.++.+++.++.++|+|+|..|+... .+|+..+++|++++++.++.+++++|+++++|+ +||.|.|+++.+|
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~GG~y~y~~~~~G 80 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTISILSWLVTAVGSMALAYAFAKCGMFSRK-SGGMGGYAEYAFG 80 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCchHHHHHHHcC
Confidence 35889999999999999999999999998754 568888999999999999999999999999999 9999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhh
Q 010416 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (511)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 215 (511)
|..||+.||.+++.+.......+....+|+.. ++|. ..+++ ...++.++++++++.+|++|
T Consensus 81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~---~~~~---~~~~~-------------~~~~~~~~~l~~~~~ln~~g 141 (438)
T PRK10655 81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTE---LFGA---TLSPV-------------QICLATIGVLWLCTVANFGG 141 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccc---ccchH-------------HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999988776666667777766 3331 11111 22456677788899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCC-CCCCCC---hHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCC
Q 010416 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (511)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (511)
.|..++++.+....+++.++++.+.++...+.+++. ++.+++ +.++..++..+.|+|.|+|.+++++||+|||+||
T Consensus 142 ~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 221 (438)
T PRK10655 142 ARITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERN 221 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcccc
Confidence 999999999999888888877777665544444443 233333 3467778888999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (511)
Q Consensus 292 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~ 370 (511)
+||++..+..++.++|++.........|.++.. .+.|..+.+++..+++...++.+..+++.+++.++...+.+|++++
T Consensus 222 iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~ 301 (438)
T PRK10655 222 VPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKS 301 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888877764 3568888888777777777888888889999999999999999999
Q ss_pred HHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh-------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 010416 371 LGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTS 443 (511)
Q Consensus 371 ~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~ 443 (511)
|+|||.+|++|+|+|| +++|+++++++.+++.++.+.. .++.+.++.++...+.|.+++++.+++|+|+++.
T Consensus 302 ~a~dg~lP~~~~~v~~-~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~ 380 (438)
T PRK10655 302 SADEGYFPKIFSRVTK-VDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVP 380 (438)
T ss_pred HhcCCchhHHHHhhCc-CCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 9999999999999997 4999999999998877655532 4788999999999999999999999999888776
Q ss_pred CCCCcccccchhhHHHHHHHHHHHHHH
Q 010416 444 RNDSSRLTSAWRQGVICLIIIACCGFG 470 (511)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (511)
+|+++ ...+++.++.+.+++.
T Consensus 381 ~~~~~------~~~~~~~~~~~~~~~~ 401 (438)
T PRK10655 381 PSKAK------VANFIAFVGALYSFYA 401 (438)
T ss_pred cchhH------HHHHHHHHHHHHHHHH
Confidence 55421 2234555555555443
No 15
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=3.2e-50 Score=412.94 Aligned_cols=426 Identities=20% Similarity=0.317 Sum_probs=335.9
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHH
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~ 132 (511)
+++++||+++.++..++++|.++|+|+|..++.....+||+.+++|++++++.++.+++++|+++++|+ +||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
.+||.+|++.||.+++.+....+......+.++.. +.| +.|.| ...++++++...+|
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~----------------~~~~~~~~l~~~ln 138 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGV---WFP----TVPHW----------------IWVLSVVLIICAVN 138 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCC----CCChH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999987777766677766654 222 23332 34556667889999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc-------ce-ecc---C-CC--CCCCCChHHHHHHHHHHHHHhhhhhhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF-------EV-DVS---N-WS--PFAPNGFKEILTGATVVFFAYVGFDAV 278 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~-~~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (511)
++|.|..++++..+..++++.++++++.++. .. +.. + +. ++.++++.+++.++..+.|+|.|+|.+
T Consensus 139 ~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~ 218 (457)
T PRK10580 139 LMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII 218 (457)
T ss_pred HccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999999998877766544321 00 111 1 11 234667778899999999999999999
Q ss_pred hhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Q 010416 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (511)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 357 (511)
++++||+|||+|++||++..+.+...++|+...+......|.++.. .++|+...++..+.++...++.+..+.+.+++.
T Consensus 219 ~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 298 (457)
T PRK10580 219 GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAI 298 (457)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888888765 346888777778877777888888888999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHH
Q 010416 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSA 431 (511)
Q Consensus 358 ~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~ 431 (511)
++.+++.+|++++|||||.+|++|+|+|| +++|++|++++.++..+..++. .++.+.++.++..++.|.++++
T Consensus 299 ~~~~~~~sR~~~~~ardg~lP~~~~kv~~-~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 377 (457)
T PRK10580 299 NSDVFGVGRMLHGMAEQGSAPKIFSKTSR-RGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILL 377 (457)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 5999999999976554432221 3678889999999999999999
Q ss_pred HHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhhh--hcccchHHHHHHHHHHHHHHHHhhhccccc
Q 010416 432 CVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLF--YRINASYILLIVAVVIAVLASAMLCLRHVS 504 (511)
Q Consensus 432 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (511)
+.+++|+|++++++++ .+++.........++++.+.+.+... ++......++....+++..+.|.+++|+|+
T Consensus 378 ~~~~lr~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 451 (457)
T PRK10580 378 SQIAFRRRLPPEEVKA-LKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKRRHDR 451 (457)
T ss_pred HHHHHHHHHHhcCCCC-CCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999998865432211 12222223344444555554444332 222233336666666777777777655443
No 16
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=2.6e-50 Score=412.76 Aligned_cols=422 Identities=24% Similarity=0.351 Sum_probs=330.5
Q ss_pred CCCcccccChhHHHHHHhcccccchhhhchhhhhhhcC-ch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhH
Q 010416 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG-PG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (511)
Q Consensus 54 ~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G-~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~ 131 (511)
++++||++++++.++++++.++|+|+|..++.+...+| +. .+++|++++++.++.+++++|+++++|+ +||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCceeeHH
Confidence 45699999999999999999999999999998776655 43 8999999999999999999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHH
Q 010416 132 TAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (511)
Q Consensus 132 ~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (511)
+.+||.+|++.||..+ ..+....+..+...++|+.. ..| ..+. ....++.+++.+++.
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~---~~~----~~~~--------------~~~~~~~~~~~~~~~ 140 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF---LTP----IDPL--------------LGKFIAAGLIIAFML 140 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC----CchH--------------HHHHHHHHHHHHHHH
Confidence 9999999999999754 44555666677777777654 222 1111 114566777778889
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCC-----CCCC-hHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 010416 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF-----APNG-FKEILTGATVVFFAYVGFDAVANSAEE 284 (511)
Q Consensus 211 l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (511)
+|++|+|..+++|.+++..++++++++++.++...+.+++++. ...+ +.+++.++..+.|+|.|+|.+++++||
T Consensus 141 ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E 220 (445)
T PRK11357 141 LHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGE 220 (445)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 9999999999999999999999887777766543333333211 1112 456788889999999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHc--chhHHHHHHHHHHHHHHHHHHHHHH
Q 010416 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASR--GLKYVSVLISFGAVAGLTTTLLVGL 361 (511)
Q Consensus 285 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~ 361 (511)
+|||+||+||++..+..++.++|++..+......|.+++.. +.|+.+.++.. .+++...++.+..+++.+++.++.+
T Consensus 221 ~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (445)
T PRK11357 221 IKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCV 300 (445)
T ss_pred hcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888887643 56777777653 3455556667778888899999999
Q ss_pred HHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010416 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (511)
Q Consensus 362 ~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~ 441 (511)
.+.+|++++|+|||.+|++|+|+|+|+++|++|++++.+++.++.+..+++.+.+..+....+.|.+...+.+++|+|+
T Consensus 301 ~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~- 379 (445)
T PRK11357 301 MYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD- 379 (445)
T ss_pred HhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC-
Confidence 9999999999999999999999998899999999999999988887778999999989999999999999998887654
Q ss_pred CCCCCCcccccchhhHHHHHHHHHHHHHHHhhhhcccchHHHHH-HHHHHHHHHHHhhhccc
Q 010416 442 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLI-VAVVIAVLASAMLCLRH 502 (511)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 502 (511)
+.+|++ +.......++++++.++++.......++...... +...+++...|.+++|+
T Consensus 380 ~~~~~~----k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 380 DYKPLW----RTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred CCCCCc----ccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheech
Confidence 444543 3333345566666666666554433343333333 33334444445444443
No 17
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=1e-49 Score=407.38 Aligned_cols=383 Identities=38% Similarity=0.636 Sum_probs=335.1
Q ss_pred cccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhch
Q 010416 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (511)
Q Consensus 57 l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~ 136 (511)
+||+++.++.+.+.++.++|+|++..++.....+|+..+++|++++++.++.+++++|+++++|+ +||.|+|++|.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCc
Confidence 58999999999999999999999999999888889989999999999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhh
Q 010416 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (511)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 216 (511)
..|++.||.+++.+....+..+...++++...+. ..+...|.+.... ..+.....+.+++++++++.+|++|.
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLP---GVGLDLPAVLTAK----PGNGGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccccCchhhhcC----CcccccccHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999887543 1111222221100 00000112456788899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHH
Q 010416 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (511)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (511)
|..+|++.+...++++.++++++.++.+.+.++++++.+.++.++..++....|+|.|+|.+.+++||+|||+|++||++
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai 232 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAI 232 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHH
Confidence 99999999999999998887777776666667777777777778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010416 297 LGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 375 (511)
Q Consensus 297 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg 375 (511)
..+..++.++|++..++.....|.++.. .+.|+.++..+.++++...++.+..+++++++.++.+...+|++++++|||
T Consensus 233 ~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg 312 (429)
T TIGR00909 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDG 312 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999988888877754 356777788888888888899999999999999999999999999999999
Q ss_pred CCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 010416 376 LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDS 447 (511)
Q Consensus 376 ~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~ 447 (511)
.+|++|+|+|+|+++|++|+++..+++.++....+++.+.++.++..++.|.+.+++.+++|+|+|+.+|++
T Consensus 313 ~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~ 384 (429)
T TIGR00909 313 LLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAF 384 (429)
T ss_pred CCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 999999999988899999999999999887777789999999999999999999999999999988877764
No 18
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.9e-49 Score=411.96 Aligned_cols=398 Identities=26% Similarity=0.355 Sum_probs=319.8
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehh
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~ 130 (511)
+++++||+++.++.+++++++++|+|+|..++.++..+|+ + .+++|++++++.++.+++++|+++++|+ +||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhH
Confidence 5677999999999999999999999999999999988887 3 5689999999999999999999999999 99999999
Q ss_pred HHHhchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHH
Q 010416 131 YTAFNELTAFLVFAQLMLD-YHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (511)
Q Consensus 131 ~~~~g~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (511)
++.+||.+|++.+|..++. +....+..+...++++... ++|.. ..|.| ...+++++++++.+
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~--~~~~~--~~~~~-------------~~~~i~~~~i~~~~ 177 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTP--VFPDC--EVPEW-------------AIRLVAVLCVLLLT 177 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCC--CCchH-------------HHHHHHHHHHHHHH
Confidence 9999999999999987763 3445556666667765431 12211 12222 22567888888999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceecc---CC--CC-CC--CCChHHHHHHHHHHHHHhhhhhhhhhh
Q 010416 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS---NW--SP-FA--PNGFKEILTGATVVFFAYVGFDAVANS 281 (511)
Q Consensus 210 ~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~--~~-~~--~~~~~~~~~~~~~~~~~~~G~e~~~~~ 281 (511)
.+|++|+|..++++.+++.++++.++++++.++.....+ +. +. +. +++..++..++..+.|+|.|+|.++++
T Consensus 178 ~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~ 257 (501)
T TIGR00911 178 LVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFV 257 (501)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 999999999999999999999998887777665432111 11 11 11 134567888999999999999999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHH-HHcchhHHHHHHHHHHHHHHHHHHHHH
Q 010416 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVG 360 (511)
Q Consensus 282 ~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~ 360 (511)
+||+|||+|++||++..+..++.++|++..++.....|.++...+.+....+ +...+ ....++.+...++.+++.++.
T Consensus 258 a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~ 336 (501)
T TIGR00911 258 TEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGS 336 (501)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888887765544333332 33333 445667778888999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010416 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (511)
Q Consensus 361 ~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~ 440 (511)
+.+.+|++++|||||.+|++|+|+|+|+++|++++++..+++.+.....++..+.++.+....+.|.+..++.+++|+|+
T Consensus 337 ~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~ 416 (501)
T TIGR00911 337 LFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKR 416 (501)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccC
Confidence 99999999999999999999999999889999999999988877766667777888888888999999999999999999
Q ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHHhhhh
Q 010416 441 RTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFY 475 (511)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
|+.+||++.+. ..+.++++.+++.+...+
T Consensus 417 p~~~rp~r~p~------~~~~l~~~~~~~~~~~~~ 445 (501)
T TIGR00911 417 PEMNRPIKVPL------FFPVFFLLSCLFLIILSL 445 (501)
T ss_pred CCCCCCccCch------HHHHHHHHHHHHHhhhhh
Confidence 98888743321 244455555555554443
No 19
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-50 Score=383.96 Aligned_cols=368 Identities=25% Similarity=0.412 Sum_probs=336.8
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHH
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~ 132 (511)
+++++||.++.+|..++++|+.||+|+|...+...+.+||+.+++|++++++.+.+...+.||...-|+ .|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
.+||+.|+.+||.||+.|+....+.....+.|++. ++| ..|.| +.+++.+++...+|
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~---WfP----~vP~W----------------v~al~~~~l~~~~N 142 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQF---WFP----DVPQW----------------VFALAAVVLLLAVN 142 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC----CCcHH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 555 55777 46788889999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce-----------eccCCC---CCCCCChHHHHHHHHHHHHHhhhhhhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-----------DVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAV 278 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (511)
+.++|.++.++..+..+|++.++.+++.+.... +.+|+. +|+|+|+.+++.++....|+|.|.|.+
T Consensus 143 L~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElv 222 (462)
T COG1113 143 LISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELV 222 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999998888765421 223332 688999999999999999999999999
Q ss_pred hhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Q 010416 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (511)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 357 (511)
...+.|.|||+|.+|||+-.......++|+.....+...+|+++.++ .+|+...++..|.++...++++..+.+.++++
T Consensus 223 GitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~ 302 (462)
T COG1113 223 GITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSAL 302 (462)
T ss_pred HHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcc
Confidence 99999999999999999999999999999999999999999998754 67999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHH
Q 010416 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSA 431 (511)
Q Consensus 358 ~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~ 431 (511)
|+.+++.+|+++.+|+||..|+.++|+||+ ++|++|++++.+...+-.++. .|+.+.+..+...+..|++..+
T Consensus 303 NSglystsRmL~~la~~g~APk~~~klsk~-gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~ 381 (462)
T COG1113 303 NSGLYSTSRMLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILL 381 (462)
T ss_pred cccccccchHHHHHhhcCcccHhHhhcccc-CCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 999999999988776554443 5788999999999999999999
Q ss_pred HHHHHhhcCCCCCC
Q 010416 432 CVIALRWKDRTSRN 445 (511)
Q Consensus 432 ~~l~~r~~~~~~~~ 445 (511)
+.+++|+++++..+
T Consensus 382 s~l~~rk~~~~~~~ 395 (462)
T COG1113 382 SQLKLRKAKPAEGK 395 (462)
T ss_pred HHHHHHhcchhccc
Confidence 99999986554433
No 20
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=4.4e-49 Score=405.94 Aligned_cols=419 Identities=23% Similarity=0.341 Sum_probs=332.1
Q ss_pred cccccChhHHHHHHhcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhc
Q 010416 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (511)
Q Consensus 57 l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g 135 (511)
.+|++++++..+++++.++|+|+|..|+.....+|+. .+++|++++++.++.+++++|+++++|+++||.|+|+++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 4889999999999999999999999999988888885 789999999999999999999999999867999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhh
Q 010416 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (511)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 215 (511)
|..|++.||.+++.+............+++.. ++|..... +++ ...+.++++.++...+|++|
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~---~~p~~~~~-~~~-------------~~~~~~~~~~~~~~~ln~~G 147 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGY---FFPLFGSG-NPV-------------PSILGASVLLWVFTFLVLRG 147 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhcCC-CcH-------------HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999888777777776777666 33322111 111 22456777888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCC-CCC-------CCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 010416 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFA-------PNGFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (511)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (511)
+|..+|+|.....+++++++++.+.++...+.+++. ++. ++.+.++..++....|+|.|+|.+++++||+||
T Consensus 148 i~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 227 (473)
T TIGR00905 148 VRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 999999999999999988888777665433333221 111 123557788889999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCCh-HHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (511)
Q Consensus 288 p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s 365 (511)
+|++||++..+..++.++|++..++.....|.+++. .++| ..+..+...+++...++.+..+++.+++.++.+.+.+
T Consensus 228 -~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~s 306 (473)
T TIGR00905 228 -KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAA 306 (473)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888887764 3567 6677777777888888889999999999999999999
Q ss_pred HHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010416 366 RLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL-----FNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (511)
Q Consensus 366 R~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~ 440 (511)
|++++|+|||.+|++|+|+||| ++|++|+++..+++.++.+. .+++.+.++.++..++.|.+++++.+++|+|+
T Consensus 307 R~~~amardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 307 EVPFSAAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHHHHHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999986 99999999999988655543 26788999999999999999999999998776
Q ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhcccc
Q 010416 441 RTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHV 503 (511)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511)
+..++ +......++.++.+.+.+..+.. +.........+..++...|.+.+|+|
T Consensus 386 ~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 386 TYPKI------KNRKALIVGVIACVYSIWLLYAA---GLKYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred Ccccc------ccchHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21111 11223455566666555544322 21122223333344445555544444
No 21
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.6e-48 Score=403.51 Aligned_cols=422 Identities=18% Similarity=0.240 Sum_probs=324.1
Q ss_pred ccccChhHHHHHHhcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhch
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~ 136 (511)
||+++.+|+.+++++.++|+|+|..++..++.+||. .+++|++++++.++.+++++|+++++|+.+||.|.|+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 689999999999999999999999999999999985 7999999999999999999999999995155777899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhh
Q 010416 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (511)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 216 (511)
.+|+++||.++++|+...+......+.++.. +.+ ..+.+ ....+++++..++|++|+
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~----------------~~~~~~~~~~~~in~~gv 137 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQY---WTD----KVNPA----------------VWIAIFYVFIVIINLFGV 137 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCC----CCCHH----------------HHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888888887776654 212 11211 222345567889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccce--e--------ccCC---CCCCCC----ChHHHHHHHHHHHHHhhhhhhhh
Q 010416 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEV--D--------VSNW---SPFAPN----GFKEILTGATVVFFAYVGFDAVA 279 (511)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~--------~~~~---~~~~~~----~~~~~~~~~~~~~~~~~G~e~~~ 279 (511)
|..++++.....+|++.++.+++.++... + +.++ +.+.+. .+.++..++....|+|.|+|.++
T Consensus 138 ~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~ 217 (478)
T TIGR00913 138 KGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVA 217 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHH
Confidence 99999999999888877776665443211 1 1111 122222 25678889999999999999999
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC----------CCChHHHHHHHcchhHHHHHHHHHH
Q 010416 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----------EDAPLSDAFASRGLKYVSVLISFGA 349 (511)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (511)
+++||+|||+||+||++..+..++.++|++..++.....|.++.+ .++|+....+..+.++...++.+..
T Consensus 218 ~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 297 (478)
T TIGR00913 218 LTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVI 297 (478)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHH
Confidence 999999999999999999999999999999888877777766421 1267777778888788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHH
Q 010416 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTL 423 (511)
Q Consensus 350 ~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~ 423 (511)
+++.+++.++.+++.+|++++|||||.+|++|+|+|| +++|++|++++.+++.+..+.. .++.+.++.+...+
T Consensus 298 ~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~-~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 376 (478)
T TIGR00913 298 LISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVDR-RGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGF 376 (478)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 5999999999998876543332 36788899999999
Q ss_pred HHHHHHHHHHHHHhhcCCC-----CCCCCcccccchhhHHHHHHHHHHHHHHHhhhhccc-----chHH-HHHHHHHHHH
Q 010416 424 TGYSVVSACVIALRWKDRT-----SRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRIN-----ASYI-LLIVAVVIAV 492 (511)
Q Consensus 424 ~~~~~~~~~~l~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~ 492 (511)
+.|++.+++.+++|+++++ .+||++.+..++...+..+..+..+.+..+..+.++ +... ++.+.+.+..
T Consensus 377 i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 456 (478)
T TIGR00913 377 FTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIAL 456 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999876433 344444433334333333333333333222222221 2222 4444445555
Q ss_pred HHHHhhhcccc
Q 010416 493 LASAMLCLRHV 503 (511)
Q Consensus 493 ~~~~~~~~~~~ 503 (511)
...|++.+|+|
T Consensus 457 ~~~~~~~~~~~ 467 (478)
T TIGR00913 457 YIGHKVYKRDK 467 (478)
T ss_pred HHHHHHhcccc
Confidence 56666655543
No 22
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=1.4e-48 Score=398.08 Aligned_cols=359 Identities=21% Similarity=0.287 Sum_probs=303.8
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhc
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g 135 (511)
+.+|+++.++.+.+.++.++|+|+|..|+... ..|+.++++|+++++.+++.+++++||++++|+ +||.|.|++| +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHH-HC
Confidence 45899999999999999999999999999764 568889999999999999999999999999999 9999999999 89
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhh
Q 010416 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (511)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 215 (511)
|.+||.+||.+|...+............|+.. ++|... .+ + ...+++++++++++.+|.+|
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~---~~p~~~--~~-~-------------~~~~~~~~i~~~~~~ln~~g 139 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLST---FFPVLN--DP-I-------------PAGIACIAIVWVFTFVNMLG 139 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccccC--Ch-H-------------HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987777766776777777766 334221 11 1 11355667778899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccceecc----CCCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCC
Q 010416 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS----NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (511)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (511)
.|...+++.+...+++++++.+.+.++.+.+.+ ++.+..+.++.+++.++..+.|+|.|+|.+++.+||+|||+||
T Consensus 140 vk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~ 219 (435)
T PRK10435 140 GTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRT 219 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcccc
Confidence 999999999988888877766655554433332 3333334556789999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (511)
Q Consensus 292 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~ 370 (511)
+||++..+..++.++|++..+......|.++.. .++|+.+.+++.++++...++.+..+++++++.+++++..+|..++
T Consensus 220 iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~ 299 (435)
T PRK10435 220 VPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVR 299 (435)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988874 5678988888888888888888888899999999999999999999
Q ss_pred HHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhh------------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010416 371 LGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL------------FNVRVLSHILSVGTLTGYSVVSACVIALR 437 (511)
Q Consensus 371 ~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r 437 (511)
|+|||.+||+|+|+|| +++|++|++++.+++.++... ..++.+.++.+...++.|++.+++.+++|
T Consensus 300 ~ardG~lP~~f~k~nk-~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 300 AANDGNFPKVYGEVDK-NGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred HHhCCCccHHHHhhCc-CCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999997 599999999988776543321 14678899999999999999999987554
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1.9e-48 Score=397.69 Aligned_cols=378 Identities=21% Similarity=0.314 Sum_probs=311.5
Q ss_pred HHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHHHHHHHH
Q 010416 69 IGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 148 (511)
Q Consensus 69 l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 148 (511)
+++|++||+|+|..++..++.+||.++++|++++++.++.+++++||++++|+ +||.|.|++|.+||.+||..||.+++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 010416 149 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 228 (511)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 228 (511)
.+....+......+.++.. ..| ..|. ..++.+++++.+.+|++|+|..+++|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~----~~~~----------------~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~ 137 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHS---WVP----GIPI----------------WLFSLVITLALTGSNLLSVKNYGEFEFWLAL 137 (446)
T ss_pred HHHHHHHHHHHHHHHHHHh---ccc----cCcH----------------HHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 9998888776655555443 111 2222 4677888888999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccee-------ccC----C--CCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHH
Q 010416 229 VKVIIVIVVIFAGAFEVD-------VSN----W--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (511)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~-------~~~----~--~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~a 295 (511)
+|++.++++++.++.... ..+ + .++.|+++.+++.++....|+|.|+|.+++.+||+|||||++||+
T Consensus 138 ~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPra 217 (446)
T PRK10197 138 CKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRA 217 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHH
Confidence 999988887766543211 011 1 134467778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCC--CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010416 296 ILGSLLICAALYVGVSLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (511)
Q Consensus 296 i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 373 (511)
+..+...+.++|++..++.....|.++.+. .++.....+..++++...++.+..+++.+++.++.+++.+|++++|||
T Consensus 218 i~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ar 297 (446)
T PRK10197 218 TNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSR 297 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999888888876432 345667778888888888899999999999999999999999999999
Q ss_pred CCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 010416 374 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDS 447 (511)
Q Consensus 374 dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~ 447 (511)
||.+|++|+|+|| +++|++|++++.+++.+..+.. .++.+.++.+...++.|.+.+++.+++||+.++++++
T Consensus 298 dg~lP~~~~~~~~-~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~- 375 (446)
T PRK10197 298 RGDAPAVMGKINR-SKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSE- 375 (446)
T ss_pred CCCcCHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 9999999999996 5999999999988776554432 4788999999999999999999999999863332221
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhh
Q 010416 448 SRLTSAWRQGVICLIIIACCGFGAGL 473 (511)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (511)
++++.+.....+.++++.+.+....
T Consensus 376 -~~~~~~~~p~~~~~~i~~~~~~~~~ 400 (446)
T PRK10197 376 -IRLRMWLYPWLTWLVIGFITFVLVV 400 (446)
T ss_pred -CCCcCCCcchHHHHHHHHHHHHHHH
Confidence 2234444444555555544444333
No 24
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-49 Score=384.46 Aligned_cols=442 Identities=20% Similarity=0.223 Sum_probs=352.7
Q ss_pred cCCCCCCcccccChhHHHHHHhccc-ccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcce
Q 010416 50 RTNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAY 127 (511)
Q Consensus 50 ~~~~~~~l~r~l~~~~~~~l~i~~~-ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y 127 (511)
+.++++++||++++|+.+.++++.+ .-.|+-.+....+..+|+ ...|+|++++++.++++.+++|+++++|+ +||.|
T Consensus 39 ~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt-sGgLy 117 (550)
T KOG1289|consen 39 ELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT-SGGLY 117 (550)
T ss_pred HcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC-CCcHH
Confidence 5679999999999999999999876 334555555566676776 59999999999999999999999999999 99999
Q ss_pred ehhHH----HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHH
Q 010416 128 LYAYT----AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI 203 (511)
Q Consensus 128 ~~~~~----~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (511)
.|+.. .+||..+|++||...+++....++.....++.+..+..+ .+|.+..+.+ ...++..+
T Consensus 118 ~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l------~np~y~~~~~--------~~~~v~~a 183 (550)
T KOG1289|consen 118 FWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSL------TNPNYEPTNY--------HQFGVFEA 183 (550)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhh------cCCCCcccce--------EeehHHHH
Confidence 99987 577788999999999999999999999999999987663 3555554444 33789999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce--------------eccCCCCCCCCChHHHHHHHHHHH
Q 010416 204 LLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--------------DVSNWSPFAPNGFKEILTGATVVF 269 (511)
Q Consensus 204 ~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 269 (511)
+..+..++|+...|..++++.+.....++.+++.++...... +++|-++|.++|+ .++.++....
T Consensus 184 i~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~f~~~~ 262 (550)
T KOG1289|consen 184 ILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILGFFNPA 262 (550)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHhhccce
Confidence 999999999999999999999999999988888877765532 2334445656676 7888999999
Q ss_pred HHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccC---CC--CCChHHHHHHHcchhHHHHH
Q 010416 270 FAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF---LD--EDAPLSDAFASRGLKYVSVL 344 (511)
Q Consensus 270 ~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~ 344 (511)
|++.|+|+.+|++||+|||+|+.||+|..+..+..++.....+.+..+.++|. .+ ..+|+.+++.+..++-....
T Consensus 263 wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~ 342 (550)
T KOG1289|consen 263 WTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVF 342 (550)
T ss_pred eEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEe
Confidence 99999999999999999999999999999999999999999999998888432 22 25799999876655544577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--hHHhhhcCCCCCchHHHHHHHHHHHHHHhhh-----cHHHHHHH
Q 010416 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHI 417 (511)
Q Consensus 345 ~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~l~~~ 417 (511)
+....+++.+.++.+.+.++||..|+.+|||.+| ++++|+|+++++|.+|+++..+++.++.++. +++++.+.
T Consensus 343 ~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~ 422 (550)
T KOG1289|consen 343 LLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSA 422 (550)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8888889999999999999999999999999999 9999999988999999999999999888876 68899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhhhhccc---chHHHHHHHHH--HHH
Q 010416 418 LSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRIN---ASYILLIVAVV--IAV 492 (511)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~ 492 (511)
..++..++|.++.++.+.++|++-++.|...+++.++...+. +...+.++.+...+...+ ..++|..++.. .+.
T Consensus 423 a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk~s~p~~~i~-v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf 501 (550)
T KOG1289|consen 423 AAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGKFSKPIGIIA-VLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLF 501 (550)
T ss_pred HHHHHHHHHHHhHHhheeecccccCCCCccccccccchHHHH-HHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhh
Confidence 999999999999999988877633444443344444444333 444444444444443333 44444444333 555
Q ss_pred HHHHhhhc-ccccCCcc
Q 010416 493 LASAMLCL-RHVSYKPL 508 (511)
Q Consensus 493 ~~~~~~~~-~~~~~~~~ 508 (511)
.++|++.. ||-++.|.
T Consensus 502 ~li~~~~~~~k~f~gP~ 518 (550)
T KOG1289|consen 502 CLIYYFVSARKWFKGPI 518 (550)
T ss_pred hhheeeeecceeecCCc
Confidence 56666444 44344443
No 25
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-49 Score=400.53 Aligned_cols=439 Identities=31% Similarity=0.482 Sum_probs=341.2
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhcCcccc-Ccceehh
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYA 130 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~-Gg~y~~~ 130 (511)
+++++||+++.+|+.++++|++||+|+|+..+.++..+|| +.+++++++++.+++.+++++|++.++|. + |+.|.|+
T Consensus 24 ~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~-~aGs~~~ya 102 (554)
T KOG1286|consen 24 GETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPV-SAGSFYTYA 102 (554)
T ss_pred ccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccc-ccccceeee
Confidence 3468999999999999999999999999999999988887 59999999999999999999999999999 7 9999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccccCCCccccCCCcccccCcchhhHHHHHHHHH-
Q 010416 131 YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE--LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL- 207 (511)
Q Consensus 131 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 207 (511)
++..|+.+||.+||.+++.|+...++.+.+++.++..... ......+..+... +....++..+++.
T Consensus 103 ~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~-----------~~~~fla~~v~in~ 171 (554)
T KOG1286|consen 103 YRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGG-----------WIPDFLAFILIINL 171 (554)
T ss_pred eeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCc-----------cHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998540 0000000111111 0112233222222
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCC---------CCCCChHHHHHHHHHHHHHhhhhhhh
Q 010416 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---------FAPNGFKEILTGATVVFFAYVGFDAV 278 (511)
Q Consensus 208 ~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (511)
+....+.+.|.....+++++.+.++.+.+++..+....|.+||.+ |.|.++.|++.+...+.|+|.|+|.+
T Consensus 172 ~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~v 251 (554)
T KOG1286|consen 172 FGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELV 251 (554)
T ss_pred HHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHH
Confidence 333333566677777888888877777777777777766656543 67778899999999999999999999
Q ss_pred hhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCCCCh----HHHHHHHcchhHHHHHHHHHHHHH
Q 010416 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LDEDAP----LSDAFASRGLKYVSVLISFGAVAG 352 (511)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~ 352 (511)
+..+||.|||||++|+|+..++..+.++|++..+.+...+|+++ +.++.+ +....+..+.+.++.+++++++++
T Consensus 252 a~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~ 331 (554)
T KOG1286|consen 252 ATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIG 331 (554)
T ss_pred HHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHH
Confidence 99999999999999999999999999999999999999999998 666554 444444455555666999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhc------HHHHHHHHHHHHHHHH
Q 010416 353 LTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN------VRVLSHILSVGTLTGY 426 (511)
Q Consensus 353 ~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~ 426 (511)
+.+++++.+++++|.+++||+||.+|++|+++||+ ++|+.|++++.+++.+..+..+ ++++.++.+++.++.|
T Consensus 332 ~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w 410 (554)
T KOG1286|consen 332 LLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAW 410 (554)
T ss_pred HHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999997 9999999999999988877775 4999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCC-----CcccccchhhHHH---HHHHHHHHHHHHhhhhc--cc--c-hHHHHHHHHHHHHH
Q 010416 427 SVVSACVIALRWKDRTSRND-----SSRLTSAWRQGVI---CLIIIACCGFGAGLFYR--IN--A-SYILLIVAVVIAVL 493 (511)
Q Consensus 427 ~~~~~~~l~~r~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~~~~~ 493 (511)
.+.+++.+++|+..+++.++ ++.+...+..... ..+..+...+....+.. +. . ...|+...+.++..
T Consensus 411 ~~i~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~ 490 (554)
T KOG1286|consen 411 TLVALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFY 490 (554)
T ss_pred HHHHHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999998765444321 1222222222222 22222222222222222 11 1 12266666677777
Q ss_pred HHHhhhccccc
Q 010416 494 ASAMLCLRHVS 504 (511)
Q Consensus 494 ~~~~~~~~~~~ 504 (511)
+.+++++|.+.
T Consensus 491 i~~~i~~~~~~ 501 (554)
T KOG1286|consen 491 IGYKIYAKPTN 501 (554)
T ss_pred HHHheeecccc
Confidence 77787776654
No 26
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=3e-47 Score=391.82 Aligned_cols=363 Identities=22% Similarity=0.355 Sum_probs=302.5
Q ss_pred cccChhHHHHHHhcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCcccc-CcceehhHHHhch
Q 010416 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNE 136 (511)
Q Consensus 59 r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~-Gg~y~~~~~~~g~ 136 (511)
|++++++..++.++++||+|+|..|+.....+||+ .+++|++++++.++.+++++|+++++|+ + ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCc
Confidence 78999999999999999999999999999888986 8999999999999999999999999998 6 5999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhh
Q 010416 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (511)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 216 (511)
..|++.||.+|+++......+......++.. ++|.+....+. ....++.++++....+|++|.
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~--------------~~~~~~~~~~~~~~~ln~~Gv 142 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGY---FFPIFGGGNNP--------------PSIIGASVLLWCVHFLVLRGV 142 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccccCCCcH--------------HHHHHHHHHHHHHHHHHHhCH
Confidence 9999999999999887766665555555544 33322111111 113456677778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCC---------C-CCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 010416 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---------F-APNGFKEILTGATVVFFAYVGFDAVANSAEESK 286 (511)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (511)
|..+++|.+.+.+|+++++++++.++...+.+++.+ + ..+.+.++..++....|+|.|+|.+++++||.|
T Consensus 143 ~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k 222 (468)
T TIGR03810 143 EGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAE 222 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhcc
Confidence 999999999999999988887776654333222211 0 112244566788899999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CCh-HHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (511)
Q Consensus 287 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 364 (511)
| +||+||++..+...+.++|++..++.....|.+++.+ ++| ..+..+...+++...++.+..+++.+++.++++...
T Consensus 223 ~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~ 301 (468)
T TIGR03810 223 K-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLP 301 (468)
T ss_pred C-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 7999999999999999999999999888888777543 344 666777777888889999999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010416 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSACVIALRWK 439 (511)
Q Consensus 365 sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 439 (511)
+|++++|||||.+|++|+|+|| +++|+++++++.+++.++.+.. .++.+.++.+...++.|.+.+++.+++|+|
T Consensus 302 sR~~~a~ardg~lP~~f~k~~~-~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 302 AEIPLLMAKDKLMPKYFGKENA-NGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHHhCCCccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999997 5999999999988876554432 578899999999999999999999999877
Q ss_pred CC
Q 010416 440 DR 441 (511)
Q Consensus 440 ~~ 441 (511)
++
T Consensus 381 ~~ 382 (468)
T TIGR03810 381 GG 382 (468)
T ss_pred cC
Confidence 63
No 27
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.2e-46 Score=381.50 Aligned_cols=372 Identities=20% Similarity=0.260 Sum_probs=299.7
Q ss_pred cChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHH
Q 010416 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (511)
Q Consensus 61 l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (511)
+++|+...+.+++++|+|+|..|+.+...+||.++++|++++++.++.+++++|+++++|+ +||.|.|+++.+||.+|+
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH-AGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHhHHHHhCchhHH
Confidence 5789999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHH
Q 010416 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (511)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 220 (511)
..||.+++.+....++.......++... +|. +.| ....++.++.++...+|++|+|..+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~-------------~~~~~~~~~~~~~~~ln~~Gv~~~~ 138 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQAL---FGW-----SSW-------------QLLLAELLTLALLWLLNLRGASSSA 138 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH---cCC-----CCc-------------hHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999877766655555555555552 221 111 1145667778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccceeccCC--CCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHH
Q 010416 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNW--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILG 298 (511)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~ 298 (511)
|++.+...+.+..+..+...+ ..+..++ .+..+.++.++..++...+|+|.|+|.+++++||+|||+||+||++..
T Consensus 139 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~ 216 (410)
T PRK11021 139 NLQTVIALLIVALVVAIWWAG--DIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMI 216 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHH
Confidence 999988765544333222111 1122222 223345777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCC-CCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 010416 299 SLLICAALYVGVSLVLTGMVPYKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLL 377 (511)
Q Consensus 299 ~~~~~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 377 (511)
+..++.++|++..+......+.++. ..+.+..+.+++..+++...++.+..+.+.+++.++.+.+.+|++++|+|||.+
T Consensus 217 ~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~l 296 (410)
T PRK11021 217 GLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRP 296 (410)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999999999998887666554443 234567777766655666667787888999999999999999999999999999
Q ss_pred chHHhhhcCCCCCchHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccc
Q 010416 378 PSIFAKVHPKRHTPVHSQVWVGIVAGILAGL-----FNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTS 452 (511)
Q Consensus 378 P~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~ 452 (511)
|++|+|+|| +++|++++++..+++.+..++ .+++.+.++.+...++.|.+..++.+++++|+.
T Consensus 297 P~~~~k~~~-~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~~----------- 364 (410)
T PRK11021 297 PSYLARLSA-RGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRY----------- 364 (410)
T ss_pred cHHHHhhcc-CCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------
Confidence 999999997 599999999998887665443 267889999999999999999999999886431
Q ss_pred chhhHHHHHHHHHHHHHHHh
Q 010416 453 AWRQGVICLIIIACCGFGAG 472 (511)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~ 472 (511)
..+++++.+.|.+...
T Consensus 365 ----~~~~~~~~~~~~~~~~ 380 (410)
T PRK11021 365 ----RPLAVLGCLLCLLLLV 380 (410)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 1356666666666654
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=3.7e-47 Score=393.46 Aligned_cols=381 Identities=18% Similarity=0.243 Sum_probs=297.6
Q ss_pred CCCCCCcccccChhHHHHHHhccc-ccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCccee
Q 010416 51 TNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128 (511)
Q Consensus 51 ~~~~~~l~r~l~~~~~~~l~i~~~-ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~ 128 (511)
.++++++||+++.++.+.++++.+ ...|++...+.....+|| +.+++|++++++.++.+++++||++++|+ +||.|+
T Consensus 4 ~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~Gg~y~ 82 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SGGQYF 82 (482)
T ss_pred cCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-CccHHH
Confidence 457888999999999999999954 237888888888888998 58999999999999999999999999999 999999
Q ss_pred hhHHHhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHH
Q 010416 129 YAYTAFN----ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204 (511)
Q Consensus 129 ~~~~~~g----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (511)
|++|.+| +..||++||.+++++....++.....+.++.....+.. ..+.|... .+....+++++
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~--------~~~~~~i~~~~ 150 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT----PGREYIPT--------RWHIFGIMIGI 150 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcccc--------CchhhhhHHHH
Confidence 9999886 57799999999999999988888888888877543211 00111111 11225677788
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccee---------ccCCC----CCCCCChHHHHHHHHHHHHH
Q 010416 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWS----PFAPNGFKEILTGATVVFFA 271 (511)
Q Consensus 205 ~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~----~~~~~~~~~~~~~~~~~~~~ 271 (511)
+++++.+|++|.|..++++.+...++++.++++.+..+...+ ++++. ++.++++ +++.++....|+
T Consensus 151 ~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fs 229 (482)
T TIGR00907 151 HLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWS 229 (482)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHH
Confidence 899999999999999999999988887777654444332211 11111 1223344 567777888899
Q ss_pred hhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccc-ccCC-C--CCChHHHHHHH-cchhHHHHHHH
Q 010416 272 YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVP-YKFL-D--EDAPLSDAFAS-RGLKYVSVLIS 346 (511)
Q Consensus 272 ~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~-~~~~-~--~~~~~~~~~~~-~~~~~~~~~~~ 346 (511)
|.|+|.+++++||+|||+|++||++..++.+..+++++..+......+ .++. + .++|+.+++.. .+.++...++.
T Consensus 230 f~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~ 309 (482)
T TIGR00907 230 MTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLL 309 (482)
T ss_pred hcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHH
Confidence 999999999999999999999999999998877766555554443333 2222 1 23588888765 45546677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--hHHhhhcCCCCCchHHHHHHHHHHHHHHhhh-----cHHHHHHHHH
Q 010416 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILS 419 (511)
Q Consensus 347 i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~l~~~~~ 419 (511)
+..+++.+++.++.+++.||++++|||||.+| ++|+|+|||+++|++|++++.+++.++.+.. .++.+.++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~ 389 (482)
T TIGR00907 310 CLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCT 389 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888889999999999999999999999999 9999999988999999999999987766654 5788999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010416 420 VGTLTGYSVVSACVIALRWKDRTSRND 446 (511)
Q Consensus 420 ~~~~~~~~~~~~~~l~~r~~~~~~~~~ 446 (511)
...++.|.++..+.++.|++ ++++||
T Consensus 390 ~~~~i~y~~~~~~~l~~~~~-~~~~~~ 415 (482)
T TIGR00907 390 VALDVSYVIPIICKLAKGRN-TIAPGP 415 (482)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCCCC
Confidence 99999999999887654433 344444
No 29
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.6e-46 Score=387.10 Aligned_cols=381 Identities=21% Similarity=0.260 Sum_probs=295.2
Q ss_pred CCCCCCcccccChhHHHHHHhccc-ccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceeh
Q 010416 51 TNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (511)
Q Consensus 51 ~~~~~~l~r~l~~~~~~~l~i~~~-ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~ 129 (511)
.++++++||+++.++.+.++++.+ ++.|++..++..+..+||+.+++|+++++..++.+++++||++++|+ +||.|+|
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~-aGG~Y~~ 83 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPI-SGAIYQW 83 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCHHHH
Confidence 568899999999999999999986 88999999999999999999999999999999999999999999999 9999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHH
Q 010416 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (511)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (511)
+++.+||.+||++||.+++++....+........++.....-..... ..+.+... ....+..+++.+++++..
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~ 156 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIG-EDPTLTSP------SGAANAVLLGSVLLVLTT 156 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-cCccccCC------CchHHHHHHHHHHHHHHH
Confidence 99999999999999999999987766665555444433211000000 01111000 001123677788888999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceecc-------CCCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhh
Q 010416 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS-------NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (511)
Q Consensus 210 ~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (511)
.+|++|.|..++++.+...++++.++++++..+...+.+ ++.++.+.....++.+.....|+|.|+|.+++++
T Consensus 157 ~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 236 (475)
T TIGR03428 157 VINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELS 236 (475)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 999999999999999999998877777666554332211 1111222223457778888999999999999999
Q ss_pred hhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCCCChHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHH
Q 010416 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LDEDAPLSDAFA-SRGLKYVSVLISFGAVAGLTTTLLV 359 (511)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~ 359 (511)
||+|||+|++||++..+..+..++|.+..+......+..+ ...+++...++. ..+.++.. .+....+++.+++.++
T Consensus 237 eE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~ 315 (475)
T TIGR03428 237 EETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLA 315 (475)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877777666555422 111122223333 34444444 3445567788889999
Q ss_pred HHHHHHHHHHHHHhCCCCc--hHHhhhcCCCCCchHHHHHHHHHHHHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHH
Q 010416 360 GLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSAC 432 (511)
Q Consensus 360 ~~~~~sR~l~~~a~dg~lP--~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~ 432 (511)
.+.+.||+++++||||.+| ++|+|+|+|+++|++|+++..+++.++.++. .++.+.++.++...+.|.++.+.
T Consensus 316 ~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~ 395 (475)
T TIGR03428 316 IQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVP 395 (475)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 5999999888999999999999988776653 57888999999999999999888
Q ss_pred HHHHhhcC
Q 010416 433 VIALRWKD 440 (511)
Q Consensus 433 ~l~~r~~~ 440 (511)
.+..|+|+
T Consensus 396 ~l~~~~~~ 403 (475)
T TIGR03428 396 LLLRRLRG 403 (475)
T ss_pred HHHHHHhc
Confidence 87776553
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=4.9e-46 Score=402.63 Aligned_cols=403 Identities=17% Similarity=0.184 Sum_probs=324.9
Q ss_pred CCCCcccccChhHHHHHH-hcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhc-CccccCcceeh
Q 010416 53 DGEGLLRRLGLFELVLIG-VGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASR-FPAVVGGAYLY 129 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~-i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~-~p~~~Gg~y~~ 129 (511)
+++..+|++++++.+.+. +++++|.|+|..++.+.+.+|.+ +++.|+++++++++.+++++|++++ +|+ +||.|.|
T Consensus 70 ~~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-aGG~Y~y 148 (953)
T TIGR00930 70 KPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-GGGAYYL 148 (953)
T ss_pred CCCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccHHHHH
Confidence 334457899999999887 99999999999999999999975 8999999999999999999999998 999 9999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHH
Q 010416 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (511)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (511)
++|.+||.+|+.+||.+++++.+..+.++.++++++..++...+......+.+ ...+++.+++++++
T Consensus 149 isralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~-------------~~~iia~i~l~ll~ 215 (953)
T TIGR00930 149 ISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPIN-------------DIRIYGTVTVVVLL 215 (953)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccc-------------cchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998543100000000110 12567888999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccee-----------c----cCCCCCCCCChHHHHHHHHHHHHHhhh
Q 010416 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-----------V----SNWSPFAPNGFKEILTGATVVFFAYVG 274 (511)
Q Consensus 210 ~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~G 274 (511)
++|+.|+|...++|.+++.++++.++.+++.++.... . .|+.+..+.+..++...+...+++|.|
T Consensus 216 ~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tG 295 (953)
T TIGR00930 216 GISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTG 295 (953)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877766543210 0 111122223333466777777889999
Q ss_pred hhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CChHH----------------------H
Q 010416 275 FDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLS----------------------D 331 (511)
Q Consensus 275 ~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~----------------------~ 331 (511)
+|+.+++++|+|||+|++||+++.++.+++++|++.++++..+.+.+.... +.... +
T Consensus 296 i~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~ 375 (953)
T TIGR00930 296 ILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMN 375 (953)
T ss_pred HHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcc
Confidence 999999999999999999999999999999999999988777766543221 00000 1
Q ss_pred HHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--hHHhhhcCCCCCchHHHHHHHHHHHHHHhh
Q 010416 332 AFA-SRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (511)
Q Consensus 332 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~ 408 (511)
.+. .........++.++++++++++.++++.+++|++++|||||.+| ++|+|+|+|+++|++|+++..+++.++.++
T Consensus 376 ~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili 455 (953)
T TIGR00930 376 NLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILI 455 (953)
T ss_pred hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 111 11112245678889999999999999999999999999999999 899999988899999999999999999888
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhh
Q 010416 409 FNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGL 473 (511)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (511)
.+++.+..+.+..++++|++.+++++++|+++++.+||.++++++ .+++++++.|+++++.
T Consensus 456 ~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~----~~sllG~l~c~~lmf~ 516 (953)
T TIGR00930 456 AELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHW----WLSLLGASLCCAIMFL 516 (953)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchH----HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998887777776554333 4667777777666544
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=8.1e-44 Score=367.26 Aligned_cols=396 Identities=20% Similarity=0.283 Sum_probs=289.2
Q ss_pred cccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHhhcCccccCcceehhHHHhchh
Q 010416 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (511)
Q Consensus 59 r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~ 137 (511)
||++.+++.++.+..+++. ...+ ..+..|+.+++.|++++++. ++.+++++||++++|+ +||.|.|++|.+||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~--~~~~--~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSL--RGLP--AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHh--hcch--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeHhhhcChh
Confidence 5699999999988776442 2223 33567888999999999876 5899999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhh
Q 010416 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (511)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 217 (511)
+|+..||.+|+++....+......+..+.. ..+... ..+.. ..+......+.++++++.+.+|++|+|
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~---~~~~~~-~~~~~--------~~~~~~~~~~~l~~~~~~~~in~~gv~ 143 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAF---IGPEAT-VDESL--------AGNKLYVLVSVLFVYWLATFIALRGVA 143 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCccc-cCccc--------ccccHHHHHHHHHHHHHHHHHHhcChH
Confidence 999999999999977655443333322221 111100 00100 011122245667777788999999999
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHhhhccc---eecc----CCCCCCCC--ChHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 010416 218 ESSVLNSCMTVV-KVIIVIVVIFAGAFE---VDVS----NWSPFAPN--GFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (511)
Q Consensus 218 ~~~~~~~~~~~~-~i~~~~~~~~~~~~~---~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (511)
..++++.+...+ ++++++++++.++.. .+.. ++.++.|+ ++..+..+ ...+|+|.|+|.++..+||+||
T Consensus 144 ~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 144 AFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccC
Confidence 999999876544 444444444443321 1110 12222232 23233322 2457899999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCh----HHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAP----LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (511)
Q Consensus 288 p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 363 (511)
|+|++||++..+..++.++|++..++.....|+++...+++ +.+..+..+.++...++.+...++.+++.++.+.+
T Consensus 223 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~ 302 (474)
T TIGR03813 223 PDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAG 302 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887654333 33344555666777777778888889999999999
Q ss_pred HHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh--------cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--------NVRVLSHILSVGTLTGYSVVSACVIA 435 (511)
Q Consensus 364 ~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~l~ 435 (511)
.+|++++++|||.+|++|+|+|| +++|+++++++.+++.++.++. .++.+.++.+...++.|++.+++.++
T Consensus 303 ~sR~~~a~ardg~lP~~~~kv~k-~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~ 381 (474)
T TIGR03813 303 PSSGMLAVAKAGYLPTFFQKTNK-NGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIY 381 (474)
T ss_pred HHHHHHHHhhcCCCCHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 6999999999988765544322 36778888888899999999999999
Q ss_pred HhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhh
Q 010416 436 LRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGL 473 (511)
Q Consensus 436 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (511)
+|+|+++.+||++.+.+++.......++++.+++.+..
T Consensus 382 lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~ 419 (474)
T TIGR03813 382 LRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVL 419 (474)
T ss_pred HHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHhe
Confidence 99888888888666655554445555555555555443
No 32
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=8.7e-44 Score=363.82 Aligned_cols=362 Identities=33% Similarity=0.569 Sum_probs=309.3
Q ss_pred cChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHhhcCccccCcceehhHHHhchhhH
Q 010416 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (511)
Q Consensus 61 l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g 139 (511)
+++++.++++++.++|+|++..+ ....+|+..++++++++++. ++.+++|+|+++++|+ +||.|.|+++.+||++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccch
Confidence 57999999999999999998877 66668888999999998888 8999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhH
Q 010416 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (511)
Q Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 219 (511)
++.+|.+++.+....+.......+++...++ +.. .+ ++....++++++++....+|++|.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~------------~~~~~~~i~~~~~~~~~~l~~~g~~~~ 140 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFG--PDL---NP------------SPWPQFLIAIILILLFTLLNLLGIKLS 140 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--GGG---TC------------SHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccc--ccc---cc------------ccchheeeeecccccceEeeechhhhh
Confidence 9999999999999998888888888877433 210 01 112336788999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhccceecc--C-----CCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCC
Q 010416 220 SVLNSCMTVVKV-IIVIVVIFAGAFEVDVS--N-----WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (511)
Q Consensus 220 ~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (511)
+|++.....+++ ..++++++.++...+.+ + .+++.++++.+++.++....|+|.|+|++++++||.|| ||
T Consensus 141 ~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ 218 (426)
T PF13520_consen 141 GKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KT 218 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HH
T ss_pred hhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hh
Confidence 999999999999 56666666665543221 1 23455666667889999999999999999999999776 89
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCC----hHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDA----PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (511)
Q Consensus 292 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 367 (511)
+||++.++.+++.++|++..++.....|+++....+ +....++..+++++..++.+..+++++++.++.+.+.+|+
T Consensus 219 ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 298 (426)
T PF13520_consen 219 IPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRL 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhc
Confidence 999999999999999999999999999988764422 4667777887789999999999999999999999999999
Q ss_pred HHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010416 368 YLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (511)
Q Consensus 368 l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~ 441 (511)
+++|+|||.+|++|+|+| |+++|++++++..+++.++.++. +++.+.++.++...+.|.+..++.+++|+|++
T Consensus 299 l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 299 LYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRP 377 (426)
T ss_dssp HHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred ccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999999999999 57999999999999996665432 57899999999999999999999999999988
Q ss_pred CCCC
Q 010416 442 TSRN 445 (511)
Q Consensus 442 ~~~~ 445 (511)
+.+|
T Consensus 378 ~~~r 381 (426)
T PF13520_consen 378 DLKR 381 (426)
T ss_dssp SSGH
T ss_pred CcCC
Confidence 8755
No 33
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=2.7e-42 Score=356.33 Aligned_cols=395 Identities=18% Similarity=0.204 Sum_probs=287.0
Q ss_pred cccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHH-HHHHHHHHHHHhhcCc-cccCcceehhHHHh
Q 010416 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFP-AVVGGAYLYAYTAF 134 (511)
Q Consensus 57 l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~~~~~ael~~~~p-~~~Gg~y~~~~~~~ 134 (511)
.+||++.+++.++.++.+. +++..| .....|...+..+++++++ .++.+++++||++++| + +||.|.|++|.+
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~--~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~-~GG~y~wv~~a~ 76 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP--TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWE-EGGIFAWVSNTL 76 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CCCeeeehhhcc
Confidence 3678999999999987764 444444 2456678777778887777 6899999999999997 8 999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
||++|++.+|.+|+.+....+............... .|.. ..+.| ...+..++++++++++|++
T Consensus 77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~--~~~~~-------------~~~i~~l~i~~~~t~~n~~ 140 (507)
T TIGR00910 77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPAL--NEDPI-------------IKFIAALIIFWALAFSQFG 140 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cchh--ccCcH-------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999999998876544432222222221110 1110 11111 2245667778889999999
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHhhhccce--e-c----cCCCCCCCCC-hHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 010416 215 GVGESSVLNSCMTVVKV-IIVIVVIFAGAFEV--D-V----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVANSAEES 285 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~--~-~----~~~~~~~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (511)
|.|...+++++.....+ ++++++++++.... + + .+.+++.|+. ..+.+..+....|+|.|+|.+++++||+
T Consensus 141 G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~ 220 (507)
T TIGR00910 141 GTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL 220 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc
Confidence 99999999988655433 33333333332211 1 1 1112333321 1133445555689999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHH----HHHcc--hhHHHHHHHHHHHHHHHHHHHH
Q 010416 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDA----FASRG--LKYVSVLISFGAVAGLTTTLLV 359 (511)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~i~~~~~~~~~~~~ 359 (511)
|||+|++||++..+.+++.++|.+..+++....|+++....++..+. ....+ ..+...++.+..+++.+++.++
T Consensus 221 knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~ 300 (507)
T TIGR00910 221 ENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIAS 300 (507)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888877888876544433332 23332 2566667788888889999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh---------cHHHHHHHHHHHHHHHHHHHH
Q 010416 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---------NVRVLSHILSVGTLTGYSVVS 430 (511)
Q Consensus 360 ~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~~~~~ 430 (511)
++++.+|++++++|||.+|++|+|+|| +++|+++++++.+++.++.++. .++.+.++.+...++.|++..
T Consensus 301 ~i~~~sR~l~~~ardg~lP~~~~k~nk-~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~ 379 (507)
T TIGR00910 301 WIVGPSRGMFAAAQKGLLPAAFAKMNK-HEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFF 379 (507)
T ss_pred HHHHHHHHHHHhcccCCcCHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 5999999999999887654331 245566778889999999999
Q ss_pred HHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhh
Q 010416 431 ACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGL 473 (511)
Q Consensus 431 ~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (511)
++.+++|+|+|+.+|+++.+.+.+...+...++++.+++..+.
T Consensus 380 ~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~ 422 (507)
T TIGR00910 380 IGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFI 422 (507)
T ss_pred HHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHhe
Confidence 9999999999998888766555554455666666666555443
No 34
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-42 Score=354.31 Aligned_cols=379 Identities=37% Similarity=0.561 Sum_probs=323.9
Q ss_pred CCCCcccccChhH-HHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhH
Q 010416 53 DGEGLLRRLGLFE-LVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (511)
Q Consensus 53 ~~~~l~r~l~~~~-~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~ 131 (511)
++++++|+++.++ ...+.++.++|.|++..++.....+ +...++|++++++..+.+++++|+++++|+ +||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS-AGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeeeehh
Confidence 5667789999999 8888999999999999999877766 555555999999999889999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-cCCCccccCCCcccccCcchhhHHHHHHHHHHHH
Q 010416 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFK-ENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (511)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (511)
+.+||+.|+.++|.+++.+....++.......++...+ +... ...+. ....+++.++.++...
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 147 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLF---PGPGLLSIGP-------------LLIILIALALIALLTL 147 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcchhhcCCc-------------hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888777743 3211 01110 2337889999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCCC-----CCChHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 010416 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA-----PNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (511)
Q Consensus 211 l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (511)
+|++|.|...+++.+...+++++++++.+.++.+.+.++.+.+. ......++.++....|+|.|+|.+++.+||+
T Consensus 148 ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 227 (466)
T COG0531 148 LNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV 227 (466)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Confidence 99999999999999999999999999998877766554322111 1233458888899999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC---ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED---APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLY 362 (511)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 362 (511)
|||+|++||++..+.+.+.++|++..+......+.++.... .|..+......+.++..++.+..+.+++++.+++..
T Consensus 228 knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~ 307 (466)
T COG0531 228 KNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWIL 307 (466)
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887654433 688888887777888999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010416 363 VQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSACVIALR 437 (511)
Q Consensus 363 ~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~~r 437 (511)
+.+|.+++|+|||.+|++|+|+|+|+++|++++++..+++.++.+.. .++.+.++.+...++.|.+..++.+++|
T Consensus 308 ~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~ 387 (466)
T COG0531 308 AVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLR 387 (466)
T ss_pred HHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998899999999999998333322 3689999999999999999999999999
Q ss_pred hcCCCCCCCCcc
Q 010416 438 WKDRTSRNDSSR 449 (511)
Q Consensus 438 ~~~~~~~~~~~~ 449 (511)
+|+++.+|+++.
T Consensus 388 ~~~~~~~~~~~~ 399 (466)
T COG0531 388 RKKPDLKRPFRL 399 (466)
T ss_pred hcCCCCCCcccc
Confidence 997777676443
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=3.6e-40 Score=341.49 Aligned_cols=379 Identities=17% Similarity=0.201 Sum_probs=269.3
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHH-HHHHHHHHHHHhhcCccccCcceehhHHHh
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~ 134 (511)
+.||+++++++..+.++.++|.+. .......+|+..++.+++++++ .++.+++++|+++++|+.+||.|+|+++.+
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~~---~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFAN---SPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCCc---hHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 347899999999999999998652 2334566788877777777766 578999999999999952699999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHH
Q 010416 135 NELTAFLVFAQLMLDYHIGAASIARSLAS-YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (511)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (511)
||++|+..+|.++..+............. .....++ .. ..+.|.... .........++++++++++.+|.
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~----~~~~~~~~~~a~~~~~~~t~vn~ 151 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFG---KD--TTQTWHFLG----LNSTQVVGILAVIWMILVTFVAS 151 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cc--hhhhhhhhc----ccchHHHHHHHHHHHHHHHHHHc
Confidence 99999999999888877654333321111 1111111 00 001110000 00111123456666668999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh----hccce-e---ccCCCCCC---CCC---hHHHHHHHHHHHHHhhhhhhhh
Q 010416 214 WGVGESSVLNSCMTVVKVIIVIVVIFA----GAFEV-D---VSNWSPFA---PNG---FKEILTGATVVFFAYVGFDAVA 279 (511)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~-~---~~~~~~~~---~~~---~~~~~~~~~~~~~~~~G~e~~~ 279 (511)
+|+|..++++++....++...+++++. .+... + ..+++++. ..+ ..+++.++..+.|+|.|+|..+
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 231 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG 231 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence 999999999998776665433222211 11111 1 11111111 011 1357778888999999999999
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-------CChHHHHHHHc----------------
Q 010416 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-------DAPLSDAFASR---------------- 336 (511)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---------------- 336 (511)
+.+||+|||||++||++..+...+.++|++..+.+....|.++..+ +.+.. ..+..
T Consensus 232 ~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~ 310 (496)
T PRK15238 232 GLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASL 310 (496)
T ss_pred HHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhh
Confidence 9999999999999999999999999999998888877777666432 11221 11111
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh--c---
Q 010416 337 -GLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N--- 410 (511)
Q Consensus 337 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~--~--- 410 (511)
.+.++..++.+..+.+.+++.+...++.+|.+++.++||.+|++|+|+|| +++|++|++++.++..++.+.. .
T Consensus 311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk-~g~P~~a~~~~~~i~~l~~~~~~~~~~~ 389 (496)
T PRK15238 311 TLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNK-NGMPANAMWLQCIIVSVFILLVSFGGDA 389 (496)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHHhCchh
Confidence 12455556678888899999999999999999999999999999999996 6999999999988877554332 1
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 010416 411 ----VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSR 449 (511)
Q Consensus 411 ----~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~ 449 (511)
++.+.++.++..++.|++.+++++++|| +++.+|+++.
T Consensus 390 ~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~ 431 (496)
T PRK15238 390 ASAFFNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVV 431 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcee
Confidence 6789999999999999999999999875 5666666544
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=5.6e-44 Score=369.32 Aligned_cols=362 Identities=29% Similarity=0.464 Sum_probs=303.7
Q ss_pred HHHHHhcccccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHHHH
Q 010416 66 LVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (511)
Q Consensus 66 ~~~l~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~ 144 (511)
+.++++++++|+|+|...+.....+|+ +.++++++++++.++.+.+++|+++++|+ +||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcCCceeeH
Confidence 345678899999999999999999999 69999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCC-ccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 010416 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIP-SWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLN 223 (511)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 223 (511)
.+++.+....+......+.++... .. ....+ .|.+. .+++.++.++...+|++|+|..++++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~------------~~~~~i~~~~~~~l~~~gv~~~~~~~ 143 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFW----GY-FPGLPSTWVWG------------ILIAIIFILLITLLNLFGVRVSGKIE 143 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccc----cc-ccccccccccc------------chhhhhhhhhhhhhhhhhhhccchHH
Confidence 999999999888887777755542 11 11333 33211 14567888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcc--ceecc--CC---------CCCCCCC--------hHHHHHHHHHHHHHhhhhhhhhhhh
Q 010416 224 SCMTVVKVIIVIVVIFAGAF--EVDVS--NW---------SPFAPNG--------FKEILTGATVVFFAYVGFDAVANSA 282 (511)
Q Consensus 224 ~~~~~~~i~~~~~~~~~~~~--~~~~~--~~---------~~~~~~~--------~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (511)
..+..++++.++.+++.++. ..+.+ +. .+..+++ +.+++.++..++++|.|+|+++..+
T Consensus 144 ~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a 223 (478)
T PF00324_consen 144 FILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILA 223 (478)
T ss_pred HHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhccccccccccccc
Confidence 99999999999888887722 11111 11 1123444 7789999999999999999999999
Q ss_pred hhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC------ChHHHHHHHcchhHHHHHHHHHHHHHHHHH
Q 010416 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED------APLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (511)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 356 (511)
||+|||||++||++..+.+..+++|++..++.....|.++.... +|+.+..+..++++...++.+..+.+++++
T Consensus 224 ~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~ 303 (478)
T PF00324_consen 224 EEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSS 303 (478)
T ss_pred ccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhh
Confidence 99999999999999999999999999999999999888885321 478888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHH
Q 010416 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVS 430 (511)
Q Consensus 357 ~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~ 430 (511)
.++.++++||++++|+|||.+|+++.++++|+++|++|++++.+++.+..+.. .++.+.++.++..++.|.+.+
T Consensus 304 ~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (478)
T PF00324_consen 304 ANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILIN 383 (478)
T ss_pred hhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhh
Confidence 99999999999999999999995555555557999999999999987766543 245677888899999999999
Q ss_pred HHHHHHhhcCCCCCC
Q 010416 431 ACVIALRWKDRTSRN 445 (511)
Q Consensus 431 ~~~l~~r~~~~~~~~ 445 (511)
++.+++|++.+.++|
T Consensus 384 ~s~~~~r~~~~~~~~ 398 (478)
T PF00324_consen 384 ISYIRFRKKFKYRGR 398 (478)
T ss_pred hhhhhhhhhhccccc
Confidence 999988887554444
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.96 E-value=1.2e-27 Score=240.63 Aligned_cols=356 Identities=13% Similarity=0.051 Sum_probs=268.7
Q ss_pred HHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHHHHHHH
Q 010416 68 LIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (511)
Q Consensus 68 ~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~ 147 (511)
.+.+++++|+|++..|......+++.+++..+++++.+...+++++|+.+++|+ +||.|+|+++.+||..+++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 456788999999999998777666677788899999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 010416 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMT 227 (511)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 227 (511)
+.+....+++....++++...+.. ......|. ....+++.+++..++++|.|...|++.++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~--~~~~~~~~----------------~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~ 144 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGE--YFGFPWSA----------------RAIVLIFTVLFGSFVWLSTSAVDRITRVLI 144 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHH--hcCCCccH----------------HHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 998888888888888888875431 11111121 345667777888999999999999999999
Q ss_pred HHHHHHHHHHHhhhccceeccCCCCCC--CCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHH
Q 010416 228 VVKVIIVIVVIFAGAFEVDVSNWSPFA--PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAA 305 (511)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~ 305 (511)
..+++.++++.+.+..+.+.+|+.+.. +.++.++..++....++|...+..+.+.+|+|+++|++||++.++..+..+
T Consensus 145 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~ 224 (381)
T TIGR00837 145 FGKIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALV 224 (381)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 999999888888777776666665532 235567778888888888444568888999987799999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCC-------CChHHHHHHH-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 010416 306 LYVGVSLVLTGMVPYKFLDE-------DAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLL 377 (511)
Q Consensus 306 ~y~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 377 (511)
+|++......+..|.+++.+ .++..+..+. .++++...++.++..+++.++.++...+.++.+..
T Consensus 225 lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~------- 297 (381)
T TIGR00837 225 LYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLAD------- 297 (381)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 99999999999999887641 2345556654 56677888888899999999988888777755443
Q ss_pred chHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCCCCCCCCcccccch
Q 010416 378 PSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACV---IALRWKDRTSRNDSSRLTSAW 454 (511)
Q Consensus 378 P~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---l~~r~~~~~~~~~~~~~~~~~ 454 (511)
.+++.+++ +.|..+.++..+...++........+..+...+....++...+.. ++.|+|+++ ++++.+.+++
T Consensus 298 --~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~--~~~~~~~~~~ 372 (381)
T TIGR00837 298 --LFKFDDSK-KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFPN--AGYRVWGGNK 372 (381)
T ss_pred --HhCCCccc-CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccccCChH
Confidence 34443333 336777788888887777766555556666555544444444333 333544332 3444444444
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-27 Score=237.57 Aligned_cols=426 Identities=15% Similarity=0.165 Sum_probs=313.6
Q ss_pred ccC-hhHHHHHHhcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchh
Q 010416 60 RLG-LFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (511)
Q Consensus 60 ~l~-~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~ 137 (511)
+++ +..++.-.+-.+.|.-.|.....+...+|.. ..+..+++++..++++.+++.+++.--..+||.|..++|.+||.
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPE 192 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPE 192 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCcc
Confidence 444 3445566788888888899999999999986 78888888888899999999999975554899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhh
Q 010416 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (511)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 217 (511)
.|..+|.++.++..+..+.|+++..+.+... ++|........-.. . +.........+-..+++++.+++.+.|+|
T Consensus 193 FGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Y--i~P~aaIf~~~~a~--~-~~~am~nnlRvYGT~~Li~m~lIVf~GVK 267 (1075)
T KOG2082|consen 193 FGGAVGLCFYLGTTVAAAMYILGAVEIFLTY--IFPAAAIFGAEDAH--D-EAAAMLNNLRVYGTVFLILMALIVFVGVK 267 (1075)
T ss_pred ccceeeehhhhhhHHHHHHHHHhHHHHHHHH--HccHhhhcCccccc--c-chhhhhcceehHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977763 33432211110000 0 00000112245667888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccce------------------------------eccC------------------
Q 010416 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEV------------------------------DVSN------------------ 249 (511)
Q Consensus 218 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------------~~~~------------------ 249 (511)
..-++...+..+.++.++.+.+.++... +..|
T Consensus 268 ~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~ 347 (1075)
T KOG2082|consen 268 FVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSAT 347 (1075)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcc
Confidence 9999888887777766665555433210 0011
Q ss_pred ---------CC------C---------CC----------CCC-------------------hHHHHHHHHHHHHHhhhhh
Q 010416 250 ---------WS------P---------FA----------PNG-------------------FKEILTGATVVFFAYVGFD 276 (511)
Q Consensus 250 ---------~~------~---------~~----------~~~-------------------~~~~~~~~~~~~~~~~G~e 276 (511)
.+ + ++ +.| -.+|...+.+-+-+.+|+-
T Consensus 348 c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGIm 427 (1075)
T KOG2082|consen 348 CDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIM 427 (1075)
T ss_pred cccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceee
Confidence 00 0 00 000 0123333444455789999
Q ss_pred hhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHH-----HHcchhHHHHHHHHHHHH
Q 010416 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF-----ASRGLKYVSVLISFGAVA 351 (511)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~ 351 (511)
+.++.+++.|||+|++|.+.+.+.+....+|+...+.+..++....+.+ -+.+.. -.....+-++++.++.++
T Consensus 428 aGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRD--KfG~sv~g~lVva~laWPsPwVi~IGsFl 505 (1075)
T KOG2082|consen 428 AGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRD--KFGQSVGGNLVVATLAWPSPWVIVIGSFL 505 (1075)
T ss_pred ecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhh--hhhhhccCcEEEEEecCCCceeeehhHHH
Confidence 9999999999999999999999999999999998888887766332211 011111 111122345688899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCc--hHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 010416 352 GLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVV 429 (511)
Q Consensus 352 ~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 429 (511)
+++++.+..+.++.|++++.|||+.+| +.|+|..++ +-|.+|+++..+++-.-+++.+.+.+..+.++.++.+|.++
T Consensus 506 ST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~n-gEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fV 584 (1075)
T KOG2082|consen 506 STCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKAN-GEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFV 584 (1075)
T ss_pred HHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCC-CCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999998885 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhcccc
Q 010416 430 SACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHV 503 (511)
Q Consensus 430 ~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511)
++++...-.-+.+.+||+++++++ .+++++..+|+++++.. .+.|.+++.. +..++|+++.-+-
T Consensus 585 NLaCavqtLLrtPnWRPRfkyyHW----~LSflG~sLC~~iMF~~-----SWyyAlvAm~-~a~~IYKYiEykG 648 (1075)
T KOG2082|consen 585 NLACAVQTLLRTPNWRPRFKYYHW----SLSFLGASLCLAIMFIS-----SWYYALVAML-IAGVIYKYIEYKG 648 (1075)
T ss_pred hHHHHHHHHhcCCCCCccchhhhh----HHHHHHHHHHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHhhcc
Confidence 999999888888888987665554 56788888888777532 2234444333 3444477665433
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.95 E-value=3e-26 Score=226.02 Aligned_cols=395 Identities=18% Similarity=0.191 Sum_probs=303.9
Q ss_pred ccChhHHHHHHhcc-cccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchh
Q 010416 60 RLGLFELVLIGVGA-SVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (511)
Q Consensus 60 ~l~~~~~~~l~i~~-~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~ 137 (511)
+++.++.++.-.+. +...=+|...+.+...+|-. .+..++++..+.+++.+++..+++.--.++||.|..++|.+||.
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpE 145 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPE 145 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcc
Confidence 78877766543332 34445677888888888875 88888888889999999999999987776999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhh
Q 010416 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (511)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 217 (511)
.|.-.|..+.+++++.++.++.++.+-+.+.++ ..... ......+=+..++..+.+..++.++..+.+.|..
T Consensus 146 fGGSIGllFf~anV~~~am~isG~vE~il~nfG---~~a~g-----~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsa 217 (945)
T KOG1288|consen 146 FGGSIGLLFFVANVFNCAMNISGFVEPILDNFG---KEAQG-----ASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSA 217 (945)
T ss_pred cCCeeeehhhHHHHhcchhhhhhhhHHHHHhcC---ccccC-----CcccccCCCCcchhhHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999988654 11000 0011111244556688888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccceeccCC------------------CCCC-----------------CCChHHHH
Q 010416 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW------------------SPFA-----------------PNGFKEIL 262 (511)
Q Consensus 218 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------~~~~-----------------~~~~~~~~ 262 (511)
.++|..++.+....+.+....+..+....+++- +++. ..+..+|-
T Consensus 218 lfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~ 297 (945)
T KOG1288|consen 218 LFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFA 297 (945)
T ss_pred HHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehh
Confidence 999999888877666665555544332211111 1110 11222344
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHH
Q 010416 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVS 342 (511)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (511)
..+...+-..+|.-+.+++++|.|+|.|.+||+.+.++....+.|++..+.+....|+.-+..+.. .+.+... -+
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~---v~~~isl--~p 372 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD---VMMHISL--HP 372 (945)
T ss_pred hhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchh---heeeccc--cc
Confidence 444555556789999999999999999999999999999999999999999998888766554321 2222211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--hHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 010416 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (511)
Q Consensus 343 ~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (511)
+++.++.+.+.+.+.++.+.++||++.++|||..+| -.|+|...+.+.|+.|+.+...+..+..+..++|.+..+.++
T Consensus 373 ~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~ 452 (945)
T KOG1288|consen 373 PFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITM 452 (945)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 355667777888888999999999999999999999 678888777799999999999999998888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 010416 421 GTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGA 471 (511)
Q Consensus 421 ~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (511)
.++++|...+++++.++....+..||.++++++. .|.++.+.+...+
T Consensus 453 ~FLlty~~vNLacl~LeissAPNFRPtFkyF~w~----TclvG~l~s~~mM 499 (945)
T KOG1288|consen 453 TFLLTYGAVNLACLLLEISSAPNFRPTFKYFNWH----TCLVGVLLSLGMM 499 (945)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCchhhhhhHH----HHHHHHHHHHhhh
Confidence 9999999999999999999999999876665554 3555555554443
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.93 E-value=8.2e-23 Score=203.80 Aligned_cols=288 Identities=17% Similarity=0.255 Sum_probs=237.7
Q ss_pred cccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhh
Q 010416 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELT 138 (511)
Q Consensus 59 r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~ 138 (511)
.++|.+|...+.++.++|+|++..|+...+.+|+.+|++++++++.+.+.+++++|+.+++|+ . +.++|.++.+||..
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-K-NFSEILSKYLGKIL 78 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CHHHHHHHHhhHHH
Confidence 368999999999999999999999999999899999999999999999999999999999997 5 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhh
Q 010416 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218 (511)
Q Consensus 139 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 218 (511)
|++.+|.+++......+......++++.... .| ..|.| .+.+.+++++...+..|.|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~----~tp~~----------------~~~l~~l~~~~~~~~~Gi~~ 136 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYL--LP----RTPII----------------VIIILIIIVSIYIVRKGIEV 136 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC----CCCHH----------------HHHHHHHHHHHHHHHccHHH
Confidence 9999999988777777777777777776532 22 34443 46677778888999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhhccceeccCCCCCCCCChHHHHHHHH-HHHHHhhhhhhhhhhhhhhcCCCCCchHHH
Q 010416 219 SSVLNSCMTVVKVII-VIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT-VVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (511)
Q Consensus 219 ~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (511)
.+|++.+...++++. ++++........+.+|..|..++|+.+...+.. ...|+|.|+|......+|+||| |+.||++
T Consensus 137 i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~ 215 (359)
T TIGR00912 137 LLRTAEILLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSI 215 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHH
Confidence 999999999888877 344544444445678888888888888888776 7889999999999999999996 5699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHcchh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 297 LGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLK-Y---VSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (511)
Q Consensus 297 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 371 (511)
..+..++.++|....++.....+.++.+. ..|..+..+....+ . ...++....+.+.+......++.+++.+.++
T Consensus 216 ~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~ 295 (359)
T TIGR00912 216 IKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKL 295 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654 56888888765433 2 3344555666666666677788888877654
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=3e-19 Score=162.36 Aligned_cols=275 Identities=19% Similarity=0.246 Sum_probs=181.1
Q ss_pred CCCCCcccccChhHHHHHHhcccc-cchhhhchhhhh-hhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceeh
Q 010416 52 NDGEGLLRRLGLFELVLIGVGASV-GAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (511)
Q Consensus 52 ~~~~~l~r~l~~~~~~~l~i~~~i-g~gi~~~~~~~~-~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~ 129 (511)
++.+++-|+.+.+|.++..++.+. |.++ ..+.... ..-|...+++|+++++++.+.+++|+|+++++|+ +||.|.|
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPr-AGGdYVY 82 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPL-NGGDYAY 82 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCceEEE
Confidence 478899999999999999988773 3322 1122111 2234458999999999999999999999999999 9999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHH
Q 010416 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLA-S-YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (511)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (511)
.+|.+||.+|++.||..|+.+..+.++..-... + .++..++. ..+ ..-...
T Consensus 83 ISRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~~~~~~--------------------------f~~-~~s~~~ 135 (399)
T PHA02764 83 IRTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQNQFEQ--------------------------FLI-VESLFP 135 (399)
T ss_pred hHHhhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeHHHHHH--------------------------HHH-HHHHHH
Confidence 999999999999999999998887665432111 1 11111110 111 111122
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc--eeccCCCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 010416 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE--VDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (511)
Q Consensus 208 ~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (511)
...+...|.+..+|...++.....+.. +...... ...+|++- ++ ....++....-.|.=.|+..+.++|.
T Consensus 136 i~~~i~~~~~~~~~~v~il~~a~~i~a---if~~~~s~n~~~~~f~~--sn---t~~~a~~~~l~~~~fi~a~~y~~~ei 207 (399)
T PHA02764 136 IVLLIIANKKIYAKIVDILAIAQIIIA---IFIAFKSFNFQYQNFTI--SN---TLLSALLFDLSAFIFINAISYIAGEI 207 (399)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHH---HHhhccceeEEEcceee--hH---HHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 233334557778887777655544411 1111111 11222221 11 34556666666777889999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (511)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s 365 (511)
||-+|....+-..+..++.++-+..+. .. . .++-+.+..+.++-.....--.|
T Consensus 208 ~n~~k~~~~gyf~s~~~~~~~~ii~sy-----------~n---~-------------~il~~~~~~w~~~y~~~~~~~~s 260 (399)
T PHA02764 208 KNIKKSSMIGYFVSYGIVAILSIIDSY-----------SN---L-------------NILFALMPIWFFSYMPIANKIQS 260 (399)
T ss_pred hcchhhhhhhhHHHHHHHHHHHHHHhh-----------hh---H-------------HHHHHHHHHHHHhheeeecchHH
Confidence 999998888888777776665443320 00 0 11111233444444445556789
Q ss_pred HHHHHHHhCCCCchHHhhhcCCCCCch
Q 010416 366 RLYLGLGRDGLLPSIFAKVHPKRHTPV 392 (511)
Q Consensus 366 R~l~~~a~dg~lP~~~~~~n~~~~~P~ 392 (511)
|++++|+.|+.+|++|+|.|| ++|.
T Consensus 261 rli~~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 261 RLIQTMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred HHHHHHHhhhhchHHHhccCC--Ccee
Confidence 999999999999999999987 6887
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.86 E-value=4.9e-18 Score=169.27 Aligned_cols=294 Identities=16% Similarity=0.161 Sum_probs=241.1
Q ss_pred cccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhh
Q 010416 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELT 138 (511)
Q Consensus 59 r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~ 138 (511)
|+-+.+...++.+|+.+|+|++..|-.....|-....+..+++..+++..++.++|.+.+.|+ +.+.-+.++|.+||.+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKKG 79 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChHH
Confidence 345678899999999999999999987655444568889999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhh
Q 010416 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218 (511)
Q Consensus 139 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 218 (511)
+++.+..+.+.......+|....++.+.+.++. ..+...++ ......+.+++..+.+.|.|.
T Consensus 80 ~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~--~~~~~~~~----------------~~~~~~f~~i~~~iv~~g~~~ 141 (394)
T PF03222_consen 80 GIVIGISYLFLLYALLVAYISGGGSILSSLLGN--QLGTDLSP----------------WLSSLLFTIIFGGIVYFGTKA 141 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH--hcCCCCcH----------------HHHHHHHHHHHHHHHHhhHHH
Confidence 999999999988888889999999999886551 11112222 345566677777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCC--CCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHH
Q 010416 219 SSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--APNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (511)
Q Consensus 219 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (511)
..|+++.+...+++.++.+.+..+.+.+.++.... .+..+...+..+....++|.-+..++.+....++-+|+++|++
T Consensus 142 v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai 221 (394)
T PF03222_consen 142 VDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAI 221 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHH
Confidence 99999999999999999999988888877776542 2356677888999999999999999999999997778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCC----CC---ChHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 297 LGSLLICAALYVGVSLVLTGMVPYKFLD----ED---APLSDAFA-SRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (511)
Q Consensus 297 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~----~~---~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 368 (511)
..+..+..++|++...++.+.+|.++.. .+ ++.....+ ..++++...+..+...++..++..+...+..+.+
T Consensus 222 ~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l 301 (394)
T PF03222_consen 222 IIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFL 301 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887642 22 23333443 4567788888888999999888888888777776
Q ss_pred HHH
Q 010416 369 LGL 371 (511)
Q Consensus 369 ~~~ 371 (511)
.+.
T Consensus 302 ~d~ 304 (394)
T PF03222_consen 302 ADL 304 (394)
T ss_pred HHH
Confidence 553
No 43
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.3e-20 Score=181.65 Aligned_cols=393 Identities=18% Similarity=0.208 Sum_probs=303.4
Q ss_pred CCcccccChhHHHHHH-hcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHH
Q 010416 55 EGLLRRLGLFELVLIG-VGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (511)
Q Consensus 55 ~~l~r~l~~~~~~~l~-i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~ 132 (511)
.+-+-+++||+.++.. .-++.|.-+|...+.+.+++|.+ .++...++..+....+++..-++++-..|+||.|..++|
T Consensus 24 ~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~ 103 (643)
T KOG2083|consen 24 TKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISR 103 (643)
T ss_pred cCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEe
Confidence 3345678999988653 33456777889999999999986 888888899999999999999999987779999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
.+|+..|.-.|..|.+++..+++.+..++++.+..+++ ....+ .+..++.+..++...+|
T Consensus 104 slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~-------~~s~~-------------~i~gi~~vt~~ill~i~ 163 (643)
T KOG2083|consen 104 SLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFE-------TESKE-------------MIDGIGSVTVLILLAIN 163 (643)
T ss_pred cccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-------hccHH-------------HhcchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999876 22222 22447788888899999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccee-----c---------cCCCCCCCCChHHHHHHHHHHHHHhhhhhhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-----V---------SNWSPFAPNGFKEILTGATVVFFAYVGFDAV 278 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (511)
..|.++..|+|.++..+.++.+.-..+..+...+ + +|..+-..++ ..|+..+..-+-+.+|.-+.
T Consensus 164 ~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~-~tfF~vf~vfFpaatgilaG 242 (643)
T KOG2083|consen 164 VAGVEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG-YTFFSVFAVFFPAATGILAG 242 (643)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC-CceEeeeeeecchhhhhhcc
Confidence 9999999999999988888777766666554322 1 0111111112 14565566666788999999
Q ss_pred hhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-----CC----hHHHHHHHcc-hhHHHHHHHHH
Q 010416 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-----DA----PLSDAFASRG-LKYVSVLISFG 348 (511)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~-~~~~~~~~~i~ 348 (511)
.+++++.|+|++++|++...+......+|+............+..+. .+ .+.+.++... ..........+
T Consensus 243 ~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AG 322 (643)
T KOG2083|consen 243 ANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAG 322 (643)
T ss_pred ccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhH
Confidence 99999999999999999999999999999887766664433332211 11 2233222110 11112345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--hHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010416 349 AVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGY 426 (511)
Q Consensus 349 ~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 426 (511)
...+...+..+.+..+.++++++.+|+..| .+++|-..+.+.|.++..+....+...+.+...+.+..+.+...+.+|
T Consensus 323 i~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~sy 402 (643)
T KOG2083|consen 323 ILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSY 402 (643)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhh
Confidence 667777778889999999999999999999 678877766789999999999999888888899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHh
Q 010416 427 SVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAG 472 (511)
Q Consensus 427 ~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
.....+++.-+...++.+|++...+..|. .+.+.+.|..+..
T Consensus 403 Alinf~~f~aSl~~s~~wRp~f~~yn~wV----SllGalKOG~ImF 444 (643)
T KOG2083|consen 403 ALINFSCFHASLAISEGWRPSFKFYNAWV----SLLGALLCLAIMF 444 (643)
T ss_pred hccchhhhhhhhccccccCchhhhHHHHH----HHHHHHHHHHHHH
Confidence 99999999999999999998766666553 4455555555543
No 44
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.85 E-value=3.8e-19 Score=176.79 Aligned_cols=288 Identities=13% Similarity=0.057 Sum_probs=221.4
Q ss_pred HHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHH----HHHhhcCccccCcceehhHHHhchhhHHH
Q 010416 66 LVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCY----AELASRFPAVVGGAYLYAYTAFNELTAFL 141 (511)
Q Consensus 66 ~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~----ael~~~~p~~~Gg~y~~~~~~~g~~~g~~ 141 (511)
.....++..+|+|++..|..+ |...++.++++.+++++..+.+ .|.....|.++.+.++++++.+||.+|.+
T Consensus 8 w~~~l~gt~IGaGiL~LP~~a----g~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQA----GLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 345567778999999999863 4445666666666666555554 44433334325899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHH
Q 010416 142 VFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (511)
Q Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 221 (511)
.++.|++.......+++...++.+.+... .....+.|++ .+..+.++++...++..|.|...|
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~--~~~~~~~p~~---------------~i~~lilv~il~~iv~~G~~~i~r 146 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLV--NQLGTAPPLR---------------GLLSLALILILVAIMSFGEKLLFK 146 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCcHH---------------HHHHHHHHHHHHHHHHhcHHHHHH
Confidence 99999999999988888888887776543 1122223332 356777777778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccceeccCCC--CCCCCChHHHHHHHHHHHHHhhhhhhhhhhh----hhhcCC---CCCc
Q 010416 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--PFAPNGFKEILTGATVVFFAYVGFDAVANSA----EESKKP---QRDL 292 (511)
Q Consensus 222 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~----~E~k~p---~k~~ 292 (511)
++.++...+++.++.+.+....+.+.+|.. |...+.+..+..++....|+|.|+|..+.++ +|.+|| +|+.
T Consensus 147 ~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~ 226 (397)
T TIGR00814 147 IMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC 226 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH
Confidence 999999999999998888888888877775 3223345678999999999999999999998 667655 4778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC----C-ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 293 PIGILGSLLICAALYVGVSLVLTGMVPYKFLDE----D-APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (511)
Q Consensus 293 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 367 (511)
.|++..+..+..++|+...+.+....+.++..+ + +.+....+...++....+..+...++...+..+...+....
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~ 306 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREG 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 899999999999999999999999998887532 2 22333334667778888888888888888888888888888
Q ss_pred HHHHHhC
Q 010416 368 YLGLGRD 374 (511)
Q Consensus 368 l~~~a~d 374 (511)
+..+-++
T Consensus 307 l~~l~~~ 313 (397)
T TIGR00814 307 LNGIVLN 313 (397)
T ss_pred HHHHHHH
Confidence 8887743
No 45
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.85 E-value=9.6e-18 Score=164.36 Aligned_cols=333 Identities=16% Similarity=0.116 Sum_probs=249.7
Q ss_pred hcccccchhhhchhhhhhhcCc--h-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHHHHHHH
Q 010416 71 VGASVGAGIFVVTGTVARDAGP--G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (511)
Q Consensus 71 i~~~ig~gi~~~~~~~~~~~G~--~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~ 147 (511)
++.-+|+|.+..|+.....+|. . ++++|+++++..-+.+.+ +.|+ .||.|++..+.+||+.|++.+|..+
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~-~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALAL-VGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeee-cCCCHHHHHHHhChHHHHHHHHHHH
Confidence 3445889999999988877774 2 788999999998888877 8999 9999999999999999999999987
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHH
Q 010416 148 LDYHIGA-----ASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVL 222 (511)
Q Consensus 148 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 222 (511)
+..-... ++.+...+ +.. ++| ..... ....+..+++..+..++++++.|...++
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p---~~~---~~~~~-------------~~l~i~siiff~i~~~l~~~~~k~~~~i 136 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAP---LLH---SPTSL-------------LALFIFSLIFFAVVLLLSLNPSKLIDRV 136 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHh---ccC---cccch-------------HHHHHHHHHHHHHHHHHHcCcccHHHHh
Confidence 6654432 22222222 221 222 11110 0114566777777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeccCCCCCCCCCh-HHHHHHHHHHHHHhh-------hhhhhhhhhh-hhcCCCCCch
Q 010416 223 NSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGF-KEILTGATVVFFAYV-------GFDAVANSAE-ESKKPQRDLP 293 (511)
Q Consensus 223 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~p~k~~p 293 (511)
+++++.++++.++++++.++.+...+.-.+..+..- ..+..++.-.-+++. |+-.+..+.+ |.|||+|+.|
T Consensus 137 Gk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~ 216 (378)
T TIGR00796 137 GKFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITK 216 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999887633221111111100 246777777778888 8888888888 9999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcccccCCC----CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 294 IGILGSL-LICAALYVGVSLVLTGMVPYKFLD----EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (511)
Q Consensus 294 ~ai~~~~-~~~~~~y~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 368 (511)
+.+..+. ....+.|+...++.....+.++.+ +.+...++.+...|+.+..++.+...++|++++++...++++.
T Consensus 217 ~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~- 295 (378)
T TIGR00796 217 YTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEY- 295 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999998 677777888888888777655432 3456677778888899999999999999999999888875554
Q ss_pred HHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCCCC
Q 010416 369 LGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIA--LRWKDRTSRND 446 (511)
Q Consensus 369 ~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~--~r~~~~~~~~~ 446 (511)
|+|.++ +.|+++.++...+...+.....++.+.++..-...+.|=+.....+. +|++.|+.+|+
T Consensus 296 ------------f~~~~~--k~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~ 361 (378)
T TIGR00796 296 ------------FHKLVP--KLSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAV 361 (378)
T ss_pred ------------HHHhcC--CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 556655 39999998888888777777799999998887777777777776666 66666665554
No 46
>PRK10483 tryptophan permease; Provisional
Probab=99.83 E-value=2.4e-17 Score=162.54 Aligned_cols=333 Identities=12% Similarity=0.011 Sum_probs=250.6
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhc
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g 135 (511)
..|++.+.+...++..|+.||+|++..|-.....+-..+....++..+.+...++.+.|.+.++|+ +-+....+++.+|
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~LG 84 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLLG 84 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcC
Confidence 447788999999999999999999999975555444568999999999999999999999999998 8889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhh
Q 010416 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (511)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 215 (511)
|.+..+.+.++.+-......+|....++.+.+.++ ..+...|. ....+.+.++...+.+.|
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~---~~~~~i~~----------------~~~~llF~~~~~~iv~~g 145 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFA---EMSLNVPA----------------RAAGFGFALLVAFVVWLS 145 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH---hcCCCCcH----------------HHHHHHHHHHHHHHHHhh
Confidence 99888888888777777788899999999988653 12222233 356778888889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCCC---CCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCc
Q 010416 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA---PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDL 292 (511)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~ 292 (511)
.|...|+++.+...+++..+.++...+.+.+.++..+.. +..+.....++....++|.-+..++.+.+..++-.|++
T Consensus 146 t~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~ki 225 (414)
T PRK10483 146 TKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTI 225 (414)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHH
Confidence 999999999999999988888777766666665553211 12234567888999999999999999999988655689
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccCCC----CCChHH---HHH-HHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 293 PIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPLS---DAF-ASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (511)
Q Consensus 293 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~----~~~~~~---~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 364 (511)
+|++..+..+..++|++-..++.+.+|.++.. .+++.. ... +..+.++...+..++..++..++..+...+.
T Consensus 226 r~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL 305 (414)
T PRK10483 226 VKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGL 305 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999977642 222222 222 3456667777788888888888877777777
Q ss_pred HHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 010416 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHIL 418 (511)
Q Consensus 365 sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~ 418 (511)
...+.++-|.+ +++ +-.....++..+...++.+.+....+..+.
T Consensus 306 ~d~l~D~~k~~---------~~~-~~r~~~~~ltflPPl~~al~~P~~Fl~AL~ 349 (414)
T PRK10483 306 FDYLADLFGFD---------DSA-MGRFKTALLTFLPPVVGGLLFPNGFLYAIG 349 (414)
T ss_pred HHHHHHHhCCC---------Ccc-ccceeeehhhHhhHHHHHHHhHHHHHHHHH
Confidence 77666654321 111 111223345666666666666444444333
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.81 E-value=1.5e-16 Score=156.68 Aligned_cols=328 Identities=12% Similarity=0.062 Sum_probs=243.0
Q ss_pred ChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHH
Q 010416 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (511)
Q Consensus 62 ~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~ 141 (511)
+.....++..|++||+|++..|-.....+-..+.+..++..+++...++.+.|...++|. +-+.-..+++.+||.+..+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTWNII 88 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHH
Confidence 566688899999999999999976555544568999999999999999999999999998 8899999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHH
Q 010416 142 VFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (511)
Q Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 221 (511)
.+..+.+-......+|....++.+.+.++. ..+...|. ....+.+.++...+.+.|.|...|
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~--~~~~~i~~----------------~~~~llF~~~~~~~v~~gt~~vd~ 150 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISM--NLGYHANP----------------RIVGICTAIFVASVLWISSLAASR 150 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhh--hccCCCcH----------------HHHHHHHHHHHHHHHHhchhHHHH
Confidence 888887777777888999999999886541 11112222 345678888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccceeccCCCCCC--CCC---hHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHH
Q 010416 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA--PNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (511)
Q Consensus 222 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (511)
.++.+...+++..+.++.....+.+.++..... ... +.....++....++|.-+..++.+....++-.|+.+|++
T Consensus 151 ~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaI 230 (415)
T PRK09664 151 ITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSV 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHH
Confidence 999999999988888787777777666554321 111 234667888889999999999999998886668899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCC----CCChHHH----HHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 297 LGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPLSD----AFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (511)
Q Consensus 297 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 368 (511)
+.+..+..++|++...++.+.+|.++.. ++.+..+ ..+...+++...+..++..++..++..+...+....+
T Consensus 231 l~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l 310 (415)
T PRK09664 231 VFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYL 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877642 2222333 2234566777777888888888777766666666665
Q ss_pred HHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 010416 369 LGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHIL 418 (511)
Q Consensus 369 ~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~ 418 (511)
..+-+. .+++ +.......+..+...++.+++....+..+.
T Consensus 311 ~D~~~~---------~~~~-~~r~~~~~ltflPPl~~al~~P~gFl~AL~ 350 (415)
T PRK09664 311 ADLFKI---------DNSH-GGRFKTVLLTFLPPALLYLIFPNGFIYGIG 350 (415)
T ss_pred HHHhCC---------CCcc-ccceeeehhhHhhhHHHHHHhhHHHHHHHH
Confidence 554322 1111 112223345566666666666544444443
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.80 E-value=2.5e-16 Score=156.15 Aligned_cols=348 Identities=14% Similarity=0.058 Sum_probs=255.2
Q ss_pred ChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHH
Q 010416 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (511)
Q Consensus 62 ~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~ 141 (511)
+.+...++..|+.+|+|++..|-.....|-..+....++++.++...++.++|...+.|+ +-+..+.+++.+||..+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHHHHH
Confidence 467788899999999999999986666444568888889999899999999999888887 7889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHH
Q 010416 142 VFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (511)
Q Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 221 (511)
.+..+.+.......+|....++.+.+.++- +.+.+.+. ....+.+.++...+.+.|.|...|
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~--~~~~~i~~----------------~~~~l~F~~~~~~iv~~g~~~v~~ 144 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISD--WTGISMSP----------------TAGVLLFTLVAGGVVCVGTSSVDL 144 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHH--hccCCCCh----------------HHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999988888999999988877775431 11111122 234556666666688889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccceeccCCCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHH
Q 010416 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL 301 (511)
Q Consensus 222 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~ 301 (511)
++..+...+++.++.+......+.+.+++... +.+..-...++....++|.-+..++.+....++-+|+.+|++..+..
T Consensus 145 ~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~ 223 (403)
T PRK15132 145 FNRFLFSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSA 223 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHH
Confidence 99999999998888877777777777766532 11111367788889999999999999999998777889999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCC----CCC---hHHH-HHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010416 302 ICAALYVGVSLVLTGMVPYKFLD----EDA---PLSD-AFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (511)
Q Consensus 302 ~~~~~y~~~~~~~~~~~~~~~~~----~~~---~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 373 (511)
+..++|++-..++.+.+|.++.. ++. +..+ ..+...+++...+..+...++..++..+...+..+.+.++-+
T Consensus 224 i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~ 303 (403)
T PRK15132 224 IPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQ 303 (403)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988642 222 2333 334567788888888888888888888888888888777654
Q ss_pred CCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh--cHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 010416 374 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--NVRVLSHILS-VGTLTGYSVVSACVIALRWK 439 (511)
Q Consensus 374 dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~--~~~~l~~~~~-~~~~~~~~~~~~~~l~~r~~ 439 (511)
.+. +++ + -.....+..+...++.+.+ .|....+.++ ....+.++++.....+.|++
T Consensus 304 ~~~--------~~~-~-r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 304 RRN--------TVG-G-RLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred cCc--------ccc-C-CchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 311 111 1 1223344455555555543 2333333333 33345556666655555543
No 49
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.76 E-value=2.6e-15 Score=147.97 Aligned_cols=374 Identities=11% Similarity=0.020 Sum_probs=261.3
Q ss_pred HHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCcceehhHHHhchhhHHHHHHHH
Q 010416 68 LIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRF-PAVVGGAYLYAYTAFNELTAFLVFAQL 146 (511)
Q Consensus 68 ~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~-p~~~Gg~y~~~~~~~g~~~g~~~g~~~ 146 (511)
...+|+.+|+|++..|-.....|-...++..+++..+++..++.+.|..... |+ +.+.-+.+++.+||.++.+.+..|
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~-~~~i~~v~~~~lG~~g~~i~~ilY 104 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNP-SGNITETVEEHFGKTGGVVITFLY 104 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCHHHHHHHHcChhHHHHHHHHH
Confidence 4566778999999999766554445688999999999999999999999999 55 667888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccc-CCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 010416 147 MLDYHIGAASIARSLASYVVSILELFPFFKE-NIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSC 225 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 225 (511)
.+.......+|.....+.+.+.+. .+.+. ..|. .+..+++..+...+...|.|...|++.+
T Consensus 105 ff~ly~ll~aY~~~itn~l~sfl~--~ql~~~~~~r----------------~l~slifv~~l~~iv~~G~~~v~kv~~~ 166 (443)
T PRK13629 105 FFAICPLLWIYGVTITNTFMTFWE--NQLGFAPLNR----------------GFVALFLLLLMAFVIWFGKDLMVKVMSY 166 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hhcCcCCccH----------------HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999888888888777777766422 11111 1122 4678888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccceeccCCCCCC----CC----Ch-HHHHHHHHHHHHHhhhhhhhhhhhhh----hc------
Q 010416 226 MTVVKVIIVIVVIFAGAFEVDVSNWSPFA----PN----GF-KEILTGATVVFFAYVGFDAVANSAEE----SK------ 286 (511)
Q Consensus 226 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~----~~-~~~~~~~~~~~~~~~G~e~~~~~~~E----~k------ 286 (511)
+...+++.++.+.+..+.+.+.+++.... ++ +. .....++....++|.-+-.++.++.. .+
T Consensus 167 Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~ 246 (443)
T PRK13629 167 LVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRD 246 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccc
Confidence 99999999999999999888877765321 11 11 24677888899999888888887766 42
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC----CCCh-HHHHHHHcch---------hHHHHHHHHHHHHH
Q 010416 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAP-LSDAFASRGL---------KYVSVLISFGAVAG 352 (511)
Q Consensus 287 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~---------~~~~~~~~i~~~~~ 352 (511)
+.+|+..|++..+..+..++|++..+.+.+..++++.. ++.+ +...++...+ +....+..+...++
T Consensus 247 ~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~A 326 (443)
T PRK13629 247 FTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVA 326 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHH
Confidence 12477899999999999999999999999999988853 3445 5556665555 66788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC-chHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHH----HHHHHH
Q 010416 353 LTTTLLVGLYVQSRLYLGLGRDGLL-PSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVG----TLTGYS 427 (511)
Q Consensus 353 ~~~~~~~~~~~~sR~l~~~a~dg~l-P~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~ 427 (511)
...+..+...+....+..+.++... ++ =.|.|+| ..-....++..+.+ .+....+.+.+.-+.+++ ..+.|+
T Consensus 327 I~TSFlGv~LGl~E~l~gl~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~-w~~~~~np~il~~i~~~~gPiia~il~l 403 (443)
T PRK13629 327 IFKSFFGHYLGTLEGLNGLILKFGYKGD-KTKVSLG-KLNTISMIFIMGST-WVVAYANPNILDLIEAMGAPIIASLLCL 403 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccCHH-HHHHHHHHHHHHHH-HHHHHhCccHHHHHHHhhhHHHHHHHHH
Confidence 8899999989988888888753211 10 0022221 12222223333333 333333555554444433 345555
Q ss_pred HHHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 010416 428 VVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGA 471 (511)
Q Consensus 428 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (511)
++..+. +|.|..++ ++++.....+.+.|++.....+
T Consensus 404 ~P~y~i----~kvp~l~~----yr~~~~n~fv~~~Gl~~i~~~~ 439 (443)
T PRK13629 404 LPMYAI----RKAPSLAK----YRGRLDNVFVTVIGLLTILNIV 439 (443)
T ss_pred HHHHHH----HccHHHHH----hCCCchhHHHHHHHHHHHHHHH
Confidence 555443 34443322 1233444555556555544433
No 50
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.76 E-value=7.2e-15 Score=147.65 Aligned_cols=289 Identities=17% Similarity=0.156 Sum_probs=228.1
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhcCccccC-cceehhHHH
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTA 133 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~G-g~y~~~~~~ 133 (511)
..+++.+....+.+.+++.+|+|++..|-.. +.+|- ..+...++++.++....+.+.|...+.|+ +. +.++-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~-~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF-GGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHH
Confidence 3466677888889999999999999999644 44454 58999999999999999999999999998 74 999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHH
Q 010416 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (511)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (511)
+||.++++.+..+.+.......+|....++.+.+.++ ..+... + ..+.+..+++..+...+.+
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~--~~~~~~-~--------------~~r~~~~lif~~~~~~l~~ 144 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLG--NQFGLN-P--------------LPRKLGSLIFALVLAFLSW 144 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH--hhcccC-C--------------cchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888654 111111 1 1125566777777788999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCC--C-CCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCC
Q 010416 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--A-PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (511)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k 290 (511)
.|.+..-|.+..+...+++.++++......+.+.++.... . +..+..++.++....++|.++-..+.+..|+|++++
T Consensus 145 ~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~ 224 (415)
T COG0814 145 LGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK 224 (415)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence 9999999999999999999999988888887666555332 2 245668899999999999999999999999998887
Q ss_pred C-chHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-------CCChHHHHH-HHcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010416 291 D-LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-------EDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVGL 361 (511)
Q Consensus 291 ~-~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 361 (511)
+ ++|++..+..+..++|+...+....+++.+..+ +........ .....+.......+....+..++.....
T Consensus 225 ~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~ 304 (415)
T COG0814 225 KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVY 304 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCch
Confidence 7 999999999999999999999999998887432 222233333 3344555666666666666655544443
Q ss_pred HH
Q 010416 362 YV 363 (511)
Q Consensus 362 ~~ 363 (511)
..
T Consensus 305 lg 306 (415)
T COG0814 305 LG 306 (415)
T ss_pred hh
Confidence 33
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.75 E-value=2.3e-15 Score=147.48 Aligned_cols=287 Identities=19% Similarity=0.304 Sum_probs=245.7
Q ss_pred ccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhH
Q 010416 60 RLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (511)
Q Consensus 60 ~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g 139 (511)
|+|.+|...+.+...+|+++...|+.....+| .+|++.+++++......+.+..+.+++|+ ....++.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhCcHHH
Confidence 57899999999999999999999998888886 89999999999999999999999999994 8899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhH
Q 010416 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (511)
Q Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 219 (511)
.+.+..+.+.+....+......++.++... +| ..|.| .+...+++++......|.+..
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~--lp----~TP~~----------------~i~~~~ll~~~y~a~~G~e~i 135 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYL--LP----ETPIW----------------VIILLFLLVAAYAARKGIEVI 135 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC----cCCHH----------------HHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999888853 23 56664 566778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccceeccCCCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHH
Q 010416 220 SVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGS 299 (511)
Q Consensus 220 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~ 299 (511)
+|.......+.++..+.+........+.+|..|..++|+..++.+.....+.|.|.|....+.+.+||| |+..|....+
T Consensus 136 ~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~k~~~~~ 214 (320)
T PF03845_consen 136 ARVAEILFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK-KKLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHH
Confidence 999999988888888888888887788889999999999999999989999999999999999999997 4578999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 300 LLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLK----YVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (511)
Q Consensus 300 ~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 372 (511)
...++++|....+......+.+.... ..|..+..+....+ -...++....+.+.+......++++++.+..+-
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f 292 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLF 292 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888888876543 56777777654322 344555556666667777777888888877653
No 52
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.59 E-value=1.6e-12 Score=129.62 Aligned_cols=357 Identities=15% Similarity=0.055 Sum_probs=228.2
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCc-----c
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGG-----A 126 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg-----~ 126 (511)
++...+|.-++++..+-.++.++|.|+..+| .+....|+. .+...++.+++.+.++..+.+.-+.+|. -.| .
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~-~~~~r~~~Y 107 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLP-YALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEA-VPGKRRYRY 107 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhH-HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccCCCh
Confidence 3444577799999999999999999999998 677778885 6899999999999999888888888888 666 6
Q ss_pred eehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHH
Q 010416 127 YLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206 (511)
Q Consensus 127 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (511)
-+.+.+.||++.-.++++...+..+..+..+....++.+..++........ +. ++.....+.+++.+.
T Consensus 108 ~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l----------~~~~f~iif~~i~~~ 175 (437)
T KOG1303|consen 108 PDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SL----------DKQYFIIIFGLIVLP 175 (437)
T ss_pred HHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--cc----------cceehhhhHHHHHHH
Confidence 677788999887778899999999999999999999999997653221110 00 101111222232222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceecc-CC-CCCCCCChHHH-HHHHHHHHHHhhhhhhhhhhhh
Q 010416 207 LLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS-NW-SPFAPNGFKEI-LTGATVVFFAYVGFDAVANSAE 283 (511)
Q Consensus 207 ~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~~~~~~G~e~~~~~~~ 283 (511)
... +...+...++........+.........+....-.. +- .+....+..+. +.++....|+|.|+-....+..
T Consensus 176 ~s~---lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~ 252 (437)
T KOG1303|consen 176 LSQ---LPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQH 252 (437)
T ss_pred HHH---CCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHh
Confidence 222 333344555555555555555544555554432111 11 11111111122 6788999999999999999999
Q ss_pred hhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHc-chhHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 284 ESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLVGLY 362 (511)
Q Consensus 284 E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 362 (511)
.+|+|+| ++|+.+.+..+++++|+.+++.-+..++++..++ +.... ...|.....++...+.++++...+.+
T Consensus 253 tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~------il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~ 325 (437)
T KOG1303|consen 253 TMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDN------ILLSLQPPTWLIALANILIVLHLIGSYQIYAQ 325 (437)
T ss_pred hcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchh------hhhcccCchhHHHHHHHHHHHHHhhhhhhhhc
Confidence 9999977 9999999999999999999999888877765322 33444 36677777788888888776644433
Q ss_pred HHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 010416 363 VQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV--GTLTGYSVVSACVIAL 436 (511)
Q Consensus 363 ~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~l~~ 436 (511)
-..-.+..+.++ -++.+.+.+.-.+.=.|...+.....+... +-.|+.+.++.+. ....++.++++.++..
T Consensus 326 pl~~~~E~~~~~--~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~-~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 326 PLFDVVEKLIGV--KHPDFKKRSLVLRLLVRTFFVAVTTFVALS-FPFFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred chHHHHHHHhcc--CCccccccccceeeehhhHHHHHHHHHHHh-ccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333332221 111122211001222222222222211111 1256777777753 4468888888887665
No 53
>PLN03074 auxin influx permease; Provisional
Probab=99.52 E-value=2.6e-11 Score=123.82 Aligned_cols=239 Identities=11% Similarity=0.033 Sum_probs=140.9
Q ss_pred ccccChhHHHHHHhcccccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHH----HHhhcCccccCcce-----
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYA----ELASRFPAVVGGAY----- 127 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~a----el~~~~p~~~Gg~y----- 127 (511)
.++-+..+...-.+.+.+|.|++..|. ++..+|. ..++..++.++++...+..+. |..++.|+ .+-.|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~-Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~-~~~~~~~~~~ 120 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKER-EKVDFKNHVI 120 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHH-HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-CCCchhHHHH
Confidence 345556666556777889999999886 5566676 477777777777776666555 56666665 44322
Q ss_pred ---ehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHH
Q 010416 128 ---LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204 (511)
Q Consensus 128 ---~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (511)
+-+.+.+||.++.+......+.....+..+....++.+.. +.+. .+...|. .+...+.
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~---l~~~--~~~~~~~--------------~i~~~v~ 181 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYY---INDN--LDKRTWT--------------YIFGACC 181 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhh---hCCC--cCCCeEE--------------eehHHHH
Confidence 2233467988888776655555555554444443433222 1110 0111121 1222222
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 010416 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEE 284 (511)
Q Consensus 205 ~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (511)
+. +...+..|..+++..+.....+.....+.+......+...++...+.++..++.++.+..|+|.|+-....+-.|
T Consensus 182 ~~---~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~ 258 (473)
T PLN03074 182 AT---TVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHA 258 (473)
T ss_pred HH---HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 22 222344556665554444433333233333333322222222112334556777888899999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010416 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (511)
Q Consensus 285 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 321 (511)
+|||+ ++++....+...+...|+...+..+..++++
T Consensus 259 M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 259 MWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred ccChh-cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 99995 5999988888888888888777766666654
No 54
>PTZ00206 amino acid transporter; Provisional
Probab=99.46 E-value=8.3e-11 Score=120.71 Aligned_cols=245 Identities=15% Similarity=0.143 Sum_probs=156.2
Q ss_pred ChhHHHHHHhcccccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHH
Q 010416 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (511)
Q Consensus 62 ~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (511)
+..+..+-.+.+++|+|++..|.. ...+|. ..++..++.++++......+.+.+.+-+ .-...+.+++.+||+..+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~--~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSA-ANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN--IRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHhCHHHHH
Confidence 345556666777899999998874 456676 4777777777777777777777776633 446666777789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHH
Q 010416 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (511)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 220 (511)
++.....+..+..+.++....++.+...+... ..+.+....+ ++.. ......+.+..-+...+.++..+
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~-----~~~~~~~~~~----~~r~--~~~~i~~~i~lPLs~~r~i~~L~ 206 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGT-----NAPDFLKQKS----GNRL--LTSLMWLCFMLPLVIPRHIDSLR 206 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----Cccchhhhcc----CcEE--eeeehhhhHhhhcccccchHHHH
Confidence 99999999999999999999999888754310 1111111000 0000 01111112222333345566666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccceeccCCC-----C-------CCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCC
Q 010416 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-----P-------FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288 (511)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 288 (511)
++..+.....+...+..++.......+++.+ + .+.. ....+.++....|+|.++.....+-+|+|||
T Consensus 207 ~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 207 YVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 6654443332222222222222111111111 0 0111 1256788999999999999999999999987
Q ss_pred C-CCchHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010416 289 Q-RDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (511)
Q Consensus 289 ~-k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 321 (511)
. |+..+.+..++.++.++|....+.-+..++.+
T Consensus 286 t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 286 SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 4 67889999999999999999988888777654
No 55
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.44 E-value=3.3e-10 Score=111.43 Aligned_cols=379 Identities=14% Similarity=0.109 Sum_probs=215.7
Q ss_pred CCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCc-hHHHHHHHHHHHHH----HHHHHHHHHhhcCccc------
Q 010416 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASV----LNALCYAELASRFPAV------ 122 (511)
Q Consensus 54 ~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~----~~~~~~ael~~~~p~~------ 122 (511)
.++.++..|..+.+.--+-+++|+|++..|. +...+|. ...+.-++.+.+++ ....+--+++++.-+.
T Consensus 40 ~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~-AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~ 118 (449)
T KOG1304|consen 40 LRDREHPTSATQTLIHLLKGSIGTGILSLPL-AFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAE 118 (449)
T ss_pred cccCCCCCchHHHHHHHHHhhhccccccChH-HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHH
Confidence 3444556888888888888899999988886 5566665 34444444444433 3444555666654220
Q ss_pred ------cCcceehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcch
Q 010416 123 ------VGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLS 196 (511)
Q Consensus 123 ------~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (511)
.+|.- | .|.+||...+++-....+++...++.+....++.+.++.+ . ...+.+.
T Consensus 119 ~~~~a~~~~~~-~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~---~--~~~~~~s------------- 178 (449)
T KOG1304|consen 119 TAESAMEGGPG-W-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVD---E--HSPGVLS------------- 178 (449)
T ss_pred HHHHHHcCCcH-H-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHh---c--cCCCCcc-------------
Confidence 12222 5 7789999999999999999999999999999999999665 1 0112221
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce-eccCCCCCC-CCChHHHHHHHHHHHHHhhh
Q 010416 197 INILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-DVSNWSPFA-PNGFKEILTGATVVFFAYVG 274 (511)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G 274 (511)
.....++.+..... +.-+|..+++.-......++.++.+.+...... +....++.. -.++.++...+..+.|+|-|
T Consensus 179 ~~~~i~~~~~~~ll--l~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEG 256 (449)
T KOG1304|consen 179 VRLYILIQLPPLLL--LNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEG 256 (449)
T ss_pred HHHHHHHHHHHHHH--HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhcc
Confidence 01222222222223 333455555555555555544444444332211 111221110 12366788889999999999
Q ss_pred hhhhhhhhhhhcCCCCCch---HHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHHHHHHHHH
Q 010416 275 FDAVANSAEESKKPQRDLP---IGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVA 351 (511)
Q Consensus 275 ~e~~~~~~~E~k~p~k~~p---~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 351 (511)
.-.+-.+=+++|+|+ ++| +.+-.++.++.++|....+.-+..++++.-+. +..+....++...+-+...+
T Consensus 257 ig~VLPlEn~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s------ITLNLP~~~l~~~Vkl~~ai 329 (449)
T KOG1304|consen 257 IGMVLPLENSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS------ITLNLPQEILSQTVKLLLAI 329 (449)
T ss_pred ceEEEehhhcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce------EEecCCccHHHHHHHHHHHH
Confidence 999999999999995 488 99999999999999999888888877765332 11111113333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHH--HHHHHH
Q 010416 352 GLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG-LFNVRVLSHILSVGT--LTGYSV 428 (511)
Q Consensus 352 ~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~~~ 428 (511)
+.+.+.--.++..-++++.- +.+++++ +|+.-.+..-=....+++.++.. .-+++.++++.+... .+.+++
T Consensus 330 ~I~ls~pLQ~yv~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~ 403 (449)
T KOG1304|consen 330 AIFLTYPLQFYVPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIF 403 (449)
T ss_pred HHHHcCchhhhhhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHc
Confidence 44444444556666666642 2333331 11101111111112222222222 337888888886444 566666
Q ss_pred HHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHh
Q 010416 429 VSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAG 472 (511)
Q Consensus 429 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
+.+.-+... .++.++. ..++.+...++.+++++..+++.+
T Consensus 404 P~liel~~~--~~~~~~~--~~~~~~~ni~l~~~G~~~~v~Gty 443 (449)
T KOG1304|consen 404 PPLIELITF--YPEGKGR--FMWKLIKNIVLIVFGVFGFVYGTY 443 (449)
T ss_pred cHHHHHHHh--cccccCc--eehHHHHHHHHHHHHHHHHHHHHh
Confidence 665554444 3333211 123445555555555555544443
No 56
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.44 E-value=5.2e-11 Score=117.28 Aligned_cols=294 Identities=19% Similarity=0.242 Sum_probs=190.7
Q ss_pred CCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccc------cCcce
Q 010416 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAV------VGGAY 127 (511)
Q Consensus 54 ~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~------~Gg~y 127 (511)
+++.++++|.++.++.++++.+|+|-......+...|||+++....+.+++...+.++=.-|+.+|.+| .||..
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 334466899999999999999999999998899999999855555555666666666666666666542 37888
Q ss_pred ehhHHHhchh-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHH
Q 010416 128 LYAYTAFNEL-TAFLVFAQLMLDYHIG-AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILL 205 (511)
Q Consensus 128 ~~~~~~~g~~-~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (511)
.|.++.+|.+ ++.+.+.+....+... ........++.+.+.++ .|+ ...++++.
T Consensus 92 yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~--------i~~----------------~~~gi~l~ 147 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG--------IPP----------------WITGIILA 147 (416)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc--------ccH----------------HHHHHHHH
Confidence 9999999854 4555555544444332 33344444444444322 233 34667777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCC---------CCCCC----ChHHHHH------HHH
Q 010416 206 ALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFKEILT------GAT 266 (511)
Q Consensus 206 ~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~~----~~~~~~~------~~~ 266 (511)
++..++..-|+|...++...+..+..+..++..+..+. .+.++.. .|.++ |..+... ++.
T Consensus 148 ~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~-~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~ 226 (416)
T PF01235_consen 148 ILVALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIII-INIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVA 226 (416)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhh
Confidence 78888888899999999998888877766666655444 2322222 12222 2212111 222
Q ss_pred HHHHHh---hhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccC---CCCCChHHHHHHHcchhH
Q 010416 267 VVFFAY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF---LDEDAPLSDAFASRGLKY 340 (511)
Q Consensus 267 ~~~~~~---~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 340 (511)
=.+|+- .|.....|-+.|.++|.|+=-.+++-..+-..++..+..+.+...-.+.. .+...-....++...+++
T Consensus 227 Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~ 306 (416)
T PF01235_consen 227 RGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSW 306 (416)
T ss_pred hhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhh
Confidence 234443 46677778888999998766555555555555566665555554332222 222222344556666688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 341 VSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (511)
Q Consensus 341 ~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 372 (511)
+..++.+.+++-.+++..++.+.+.+.+..+.
T Consensus 307 g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 307 GPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999988765
No 57
>PRK11375 allantoin permease; Provisional
Probab=99.36 E-value=2.1e-08 Score=103.13 Aligned_cols=331 Identities=11% Similarity=0.033 Sum_probs=166.8
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceeh
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~---~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~ 129 (511)
..++.+|+.++++.+.+=++..+..+.+...+..+. .|- .++++.+++.++........+..+.++. =+....
T Consensus 19 pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~G---l~~~v~ 94 (484)
T PRK11375 19 PKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYG---VPFAMI 94 (484)
T ss_pred cCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHhcccccccC---CChhHh
Confidence 445557888889888776666554333333333332 232 3555555555555444444444444432 256667
Q ss_pred hHHHhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh-hccccccCCCccccCCCcccccCcchhhHHHHHHHHH
Q 010416 130 AYTAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (511)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (511)
.+..||.+.+.+.+.... +..+...+......++.+..+++ ++|.+....++. . ...-+.....+..++.++
T Consensus 95 sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~-~-----~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 95 LRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDF-T-----LLGLSLPGLITFLIFWLV 168 (484)
T ss_pred HHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-c-----cCCCcHHHHHHHHHHHHH
Confidence 777899887777777763 45555566666666666665443 333222111000 0 000111112334455566
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCCCCC-------ChHHHHHHHHHHHHHhh-hhhhhh
Q 010416 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN-------GFKEILTGATVVFFAYV-GFDAVA 279 (511)
Q Consensus 208 ~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-G~e~~~ 279 (511)
...+.+.|.|...+++.+...+.++..+.+.+..+...+.+......+. ....+..++....-++. +.-..+
T Consensus 169 ~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~ 248 (484)
T PRK11375 169 NVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSAS 248 (484)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 6666778999999999988887766666555554443332211111111 12345555434333343 445677
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hcccccCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Q 010416 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT-GMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL 358 (511)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 358 (511)
.++...|++ |+.-++..++..+...+.....+... .....-.....+ ..++....+......+..+..++++.++..
T Consensus 249 D~tRy~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~d-p~~i~~~~~~~~~~~~a~l~~v~a~~~tN~ 326 (484)
T PRK11375 249 DFTQNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWN-VLDIVQRWDSLFASFFAVLVILMTTISTNA 326 (484)
T ss_pred chhcccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC-HHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 888888886 44556666666555544433222221 111000001122 344444444344444444455555555432
Q ss_pred -HHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhh
Q 010416 359 -VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (511)
Q Consensus 359 -~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~ 408 (511)
..++.++--+. +.+||+. |+| ++.++..+++.++..+
T Consensus 327 ~~N~ys~~~~l~-----~l~pk~i---~~~-----~~~~i~~iig~~~~pw 364 (484)
T PRK11375 327 TGNIIPAGYQIA-----ALAPTKL---TYK-----NGVLIASIISLLICPW 364 (484)
T ss_pred HhhcccHHHHHH-----HhCcCcc---chh-----hHHHHHHHHHHHhccH
Confidence 34444443333 4667543 333 4555555555554443
No 58
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.32 E-value=1.5e-08 Score=98.82 Aligned_cols=292 Identities=19% Similarity=0.266 Sum_probs=196.0
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCcccc------Ccceeh
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVV------GGAYLY 129 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~------Gg~y~~ 129 (511)
+-++.+|.++.++.+.++.+|+|-......+...|||+++....+.+++...+.++=+-|+..|.+|+ ||+-+|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 55788999999999999999999999888999999998444444455555666666666777776433 788899
Q ss_pred hHHHhc-hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHH
Q 010416 130 AYTAFN-ELTAFLVFAQLMLDYH-IGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (511)
Q Consensus 130 ~~~~~g-~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (511)
.++.+| |+.|.+.+....+++- ........+.++.+...++ .|. ...++++.++
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~--------~~~----------------~~~gi~la~l 193 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG--------IPP----------------LVTGIVLALL 193 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC--------CcH----------------HHHHHHHHHH
Confidence 999998 5667777766666665 4667777778887777654 222 4677888888
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCC---------CCCCC----ChH------HHHHHHHHH
Q 010416 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFK------EILTGATVV 268 (511)
Q Consensus 208 ~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~~----~~~------~~~~~~~~~ 268 (511)
...+.+-|+|..+++......+.-+..++..+..+. .+.++.. .|.+. |+. .+..++.=.
T Consensus 194 ~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~-~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RG 272 (452)
T COG1115 194 VALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIV-LNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRG 272 (452)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHH
Confidence 889999999999999988877666555554443332 1222111 12121 111 122233334
Q ss_pred HHHh---hhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC--CCChH-HHHHHHcchhHHH
Q 010416 269 FFAY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPL-SDAFASRGLKYVS 342 (511)
Q Consensus 269 ~~~~---~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~ 342 (511)
.|+- .|....++-+.++++|.|+=-..++-..+-..++.....+++...-.++..+ ++..+ ...+++..++++.
T Consensus 273 lfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~ 352 (452)
T COG1115 273 LFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGS 352 (452)
T ss_pred hhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHH
Confidence 5554 3555556666777888664444444444435555555555555443332222 22233 4455677778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (511)
Q Consensus 343 ~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 372 (511)
.++.+.+++-.+++..++++-+-|.+.-+.
T Consensus 353 ~fv~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 353 YFVAIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988765
No 59
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.27 E-value=1.6e-08 Score=100.53 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=172.1
Q ss_pred ccccChhHHHHHHhcccccchhhhchhhhhhhcCchH-HHHHHHHHHHHHHHHHHHHHHhhcCccc-c-----Ccceehh
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGV-TISFLLAGAASVLNALCYAELASRFPAV-V-----GGAYLYA 130 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~-~~~~ll~~~~~~~~~~~~ael~~~~p~~-~-----Gg~y~~~ 130 (511)
++++|.++.++.++++.+|.|-......+...+||++ .|.|+.+ ++.....+.-.-++.++.++ + ||+-.|.
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~a-llGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTA-FIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHH-HHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 3569999999999999999984444444588899974 4444444 33334444444444444321 2 3444888
Q ss_pred HHHhc-hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHH
Q 010416 131 YTAFN-ELTAFLVFAQLMLDY-HIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (511)
Q Consensus 131 ~~~~g-~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (511)
++.++ |++|.+.+.. .+.+ ...........++.+.+.+ ..|.| ..++++.++.
T Consensus 123 ~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~--------~~~~~----------------v~~i~l~~l~ 177 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF--------NVPKL----------------VTGIVLTVLT 177 (425)
T ss_pred HHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc--------CCcHH----------------HHHHHHHHHH
Confidence 88766 7778777777 4454 3344555556666555422 22333 4566666677
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCC---------CCCCCh-HHHH---------HHHHHHH
Q 010416 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---------FAPNGF-KEIL---------TGATVVF 269 (511)
Q Consensus 209 ~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~---------~~~~~~~ 269 (511)
..+..-|.|...++...+..+..+..++..+.... .+.+|..+ |.++.. .++. .++.=..
T Consensus 178 ~~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~ 256 (425)
T TIGR00835 178 ALIIFGGLKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGL 256 (425)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHH
Confidence 77766799999999999988877776555443222 24333321 222211 1211 1222234
Q ss_pred HHh---hhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccc---CCCCCChH-HHHHHHcchhHHH
Q 010416 270 FAY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK---FLDEDAPL-SDAFASRGLKYVS 342 (511)
Q Consensus 270 ~~~---~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~ 342 (511)
|+- .|....+|-+.|+++|.|+=-.++.-..+-..++.....+.+...-.++ +.+. ..+ ...++...+.++.
T Consensus 257 fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g-~~lt~~af~~~~g~~g~ 335 (425)
T TIGR00835 257 FSNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSG-AQLTQQALSYGLGSFGA 335 (425)
T ss_pred hccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcH-HHHHHHHHHHHhhhhHH
Confidence 444 4666677778888899775444444444444555555555444332222 1122 223 2344554566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (511)
Q Consensus 343 ~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 372 (511)
.++.+..++-.+++..++.+.+-+.+..+.
T Consensus 336 ~~v~i~~~lFaftTii~~~yyge~~~~yl~ 365 (425)
T TIGR00835 336 VFVAVALFLFAFSTIIGWYYYGEKNAEFLK 365 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888999999999999999999988888764
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.20 E-value=5.7e-08 Score=90.73 Aligned_cols=266 Identities=18% Similarity=0.172 Sum_probs=169.6
Q ss_pred HHHHHhcccccchhhhchhhhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHH
Q 010416 66 LVLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLV 142 (511)
Q Consensus 66 ~~~l~i~~~ig~gi~~~~~~~~~~~G~---~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~ 142 (511)
..+..++.++|+| |.+-..+.+.-|. -+.++.++.+++....+....|+++++. +...-++.++..||.++.+.
T Consensus 8 ~~f~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~--a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 8 WAFAFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN--ATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHhhHHHHHHH
Confidence 3445666788988 6666666666654 4999999999999999999999999997 68888999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhh-hhhHHH
Q 010416 143 FAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG-VGESSV 221 (511)
Q Consensus 143 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~ 221 (511)
-....+..+..+.....+.++.+.+.++ .|.| +-++.++.+...+..++ .+..-+
T Consensus 85 d~~iif~lf~~~vVM~AGags~~~e~~~--------lP~w----------------iGali~i~~v~i~lfl~~vegi~t 140 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLLEEMFG--------LPYW----------------IGALIIILLVLILLFLGRVEGIIT 140 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHhC--------ccHH----------------HHHHHHHHHHHHHHHHhcccceee
Confidence 7666665555544444555557777654 4555 22355555556666666 888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccceeccCCCCCC--CCChHHHHHHHHHHHHHh-hhhhhhhhhhhhhcCCCCCchHHHHH
Q 010416 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA--PNGFKEILTGATVVFFAY-VGFDAVANSAEESKKPQRDLPIGILG 298 (511)
Q Consensus 222 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~p~k~~p~ai~~ 298 (511)
++.+...+.++.+.............+.++... ..+|. ........+.. ...-....+++|+|++ |+..++-..
T Consensus 141 vn~iI~P~LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~--~~~~~Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~ 217 (349)
T COG3949 141 VNGIITPFLIIILVLVTLSFQFTNLGNAAQIVLTKQGNWK--ASAVGYGALNILVAVAVLVPLGGRMESR-KVSGIGGLI 217 (349)
T ss_pred eheeHHHHHHHHHHHHHHHHHHhhccchhhhcCCcCCChH--HHHHhhhhHHHHhHhHhhhhhccccccc-chhhhhhhh
Confidence 888887777666444333322211111111111 12222 11111222222 3444556677999985 777888888
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 299 SLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (511)
Q Consensus 299 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 363 (511)
+-++.+++..+.+.......| +..+.+-|..++.+... +....++.+...+...++..+.+++
T Consensus 218 gglIlgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 218 GGLILGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred hhHHHHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777777765544 33445668888888775 4444455555555555554444443
No 61
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.05 E-value=9.4e-12 Score=126.75 Aligned_cols=355 Identities=12% Similarity=0.091 Sum_probs=207.1
Q ss_pred cccChhHHHHHHhcccccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhcCc---cccCcceehhHHHh
Q 010416 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFP---AVVGGAYLYAYTAF 134 (511)
Q Consensus 59 r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p---~~~Gg~y~~~~~~~ 134 (511)
||-|+++.....++.++|+|++..|..... +|. ..++..++.+++.......+.|.....| + .-...+-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~-~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~-~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ-SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTG-RRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccc-cccccccccccc
Confidence 467889999999999999999999975554 565 5888888899999999999999998876 3 444555667899
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHH-
Q 010416 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC- 213 (511)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 213 (511)
||+.++++..+..+........+....++.+.++.. ..... +...+ ....++...+...+..
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~---~~~~~---~~~~~-----------~~~~~i~~~i~~pls~~ 141 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIP---SFFGD---LFISR-----------YVWIIIFALIVLPLSFL 141 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeecccc---ccccc---ccccc-----------ccccccccccccccccc
Confidence 999999999888888888888888888887777433 21110 00000 1111111222222222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhccce---eccCCC---CCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcC
Q 010416 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (511)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (511)
+..+..+.++.......+.. +.+........ +..+.. .+.+..+.++..++....|+|.++.....+.+|+|+
T Consensus 142 ~~l~~l~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~ 220 (409)
T PF01490_consen 142 KNLKSLRYLSILGLFSIFYF-IVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKD 220 (409)
T ss_pred chhhHHHHHhhhhhhcccee-eeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccC
Confidence 22333333332222222211 01111111111 111111 112334568899999999999999999999999999
Q ss_pred CCC--CchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 288 PQR--DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLK-YVSVLISFGAVAGLTTTLLVGLYVQ 364 (511)
Q Consensus 288 p~k--~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 364 (511)
|+| ++.|+...+..++.++|....+..+...+.+..+ ++....... +...+..+...+..+.+.-...+..
T Consensus 221 ~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~ 294 (409)
T PF01490_consen 221 PSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQG------NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPA 294 (409)
T ss_pred CccccccceeeeehhhhhhHHhhhhhhcccceeeeeecc------hhhhcCCCcccccccccccchhhhhhccccccchh
Confidence 865 4559999999999999999999888777654222 233332222 2333444444444444433344455
Q ss_pred HHHHHHHHhCC-----CCchHHhhhcCCCCCchHHHHHHHHHHHHHHh-hhcHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 010416 365 SRLYLGLGRDG-----LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG-LFNVRVLSHILS--VGTLTGYSVVSACVIAL 436 (511)
Q Consensus 365 sR~l~~~a~dg-----~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~l~~ 436 (511)
.+.+...-++. ..++.-.+ ++..+.-.+. ...+++.++.. ..+++.+.++.+ ....+.|.+|.+.+++.
T Consensus 295 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~ 371 (409)
T PF01490_consen 295 RNSLENLLFKRAASSRDSPKNTPS-SRWLRYLIRI--ILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKL 371 (409)
T ss_pred Hhhhhhheeccccccccccccccc-cceeeeeeec--chhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHh
Confidence 55555543321 11110000 0000111111 11122222222 226777777775 33468899999988887
Q ss_pred hhcCCC
Q 010416 437 RWKDRT 442 (511)
Q Consensus 437 r~~~~~ 442 (511)
+++++.
T Consensus 372 ~~~~~~ 377 (409)
T PF01490_consen 372 FKRKRN 377 (409)
T ss_pred hccccc
Confidence 766543
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=99.04 E-value=4.8e-06 Score=82.81 Aligned_cols=243 Identities=12% Similarity=0.063 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010416 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173 (511)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (511)
++++.+++-++........++++.+..- -...-.+..||.+-+.+.....++.++...+.+....++.....
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Gl---pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~----- 125 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGL---PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG----- 125 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCC---ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-----
Confidence 5555555555555555555555443322 33344455799999999998888888887777777766653221
Q ss_pred ccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccC-CCC
Q 010416 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN-WSP 252 (511)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~ 252 (511)
+..|.| ...++..++.++..++|.|...+++++......+..+......+-..+..+ ...
T Consensus 126 ---~~~~~~----------------~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~ 186 (442)
T COG1457 126 ---TGLPVW----------------AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWV 186 (442)
T ss_pred ---CCCcHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeec
Confidence 133433 345566667888889999999999999998877776666665554222111 111
Q ss_pred CCCCChHHHHHHHHHHHHHhhhh-hhhhhhhhhhcCCCC-CchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHH
Q 010416 253 FAPNGFKEILTGATVVFFAYVGF-DAVANSAEESKKPQR-DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLS 330 (511)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~G~-e~~~~~~~E~k~p~k-~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 330 (511)
-.|..+.+++.++..+.-.+..+ -.++.++.-.|+|+. +.-.+...+......+-.....+.....+.++ +..
T Consensus 187 ~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~-----~~~ 261 (442)
T COG1457 187 KGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD-----SIA 261 (442)
T ss_pred cCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----hHH
Confidence 11445556777766655555444 446777777777641 22223333333333333333333333333322 344
Q ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 331 DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (511)
Q Consensus 331 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~ 370 (511)
+.....|+ ......+.+.++..++....+++++=....
T Consensus 262 ~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 262 DVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred HHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45555553 334455566666666555556666555554
No 63
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=99.01 E-value=8.5e-06 Score=81.17 Aligned_cols=290 Identities=13% Similarity=0.031 Sum_probs=158.1
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCc--hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehh
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP--GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~--~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~ 130 (511)
..++.+|+.++++-+.+=.+.+...+-+...+..+..|.. .++++.+++-++........+..+.++-. ..-...
T Consensus 33 P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI---pFpv~~ 109 (497)
T COG1953 33 PTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI---PFPVLS 109 (497)
T ss_pred CCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC---CchHHH
Confidence 4456689999999998776666555545555555555442 37777777777666555554444444322 334566
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccCCCccccCCCcccccCcchhhHHHHHHHHHHH
Q 010416 131 YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (511)
Q Consensus 131 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (511)
+..||-+.+-+-.....+.-+......+...+..++.++. ++|.+...++.. +..+-+....+..+++.++..
T Consensus 110 RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~------~~lg~tt~~~i~F~ifW~l~~ 183 (497)
T COG1953 110 RASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLS------PLLGLTTLELICFFIFWVLQL 183 (497)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccc------cccCCcHHHHHHHHHHHHHHH
Confidence 6788876666555555554445555555556665555544 334322111100 111222233344444555555
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCCCC-------CChHHHHHHHHHHHHHh-hhhhhhhhh
Q 010416 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAP-------NGFKEILTGATVVFFAY-VGFDAVANS 281 (511)
Q Consensus 210 ~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~G~e~~~~~ 281 (511)
++...|.+..+|++.+......+..+.+.+....+.+..+.....| +.+..++.+.....-.+ +..-..+.+
T Consensus 184 l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DF 263 (497)
T COG1953 184 LVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDF 263 (497)
T ss_pred HHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 6666899999999999999999999999998887765532221111 11223333332222111 455567788
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH----hcccccCCCCCChHHHHHHHcchhHHHH-HHHHHHHHHHHHH
Q 010416 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLT----GMVPYKFLDEDAPLSDAFASRGLKYVSV-LISFGAVAGLTTT 356 (511)
Q Consensus 282 ~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~ 356 (511)
+.+.|+| |+.-++-.+++-+...++-+..+... ...+..- ....|+..+........ +..+...+++++.
T Consensus 264 sRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~----w~P~di~~~~~~~~~~~fl~~l~~~iati~~ 338 (497)
T COG1953 264 TRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETI----WDPLDIVARFLSGFYAAFLAGLTFAVATIST 338 (497)
T ss_pred hcccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCccc----CCHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 8888886 44445555555555444444333333 2222221 12345665555443333 4444444444443
No 64
>PRK11017 codB cytosine permease; Provisional
Probab=98.99 E-value=8.7e-06 Score=82.26 Aligned_cols=218 Identities=14% Similarity=0.143 Sum_probs=115.8
Q ss_pred ccccChhHHHHHHhcccccchhhhchhhhhhhc-Cc-hHHHHHHHHHHHHHHHHHHHHHHhhcCccccC-cceehhHHHh
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDA-GP-GVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAF 134 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~-G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~G-g~y~~~~~~~ 134 (511)
+|+ ++++....-++..+....+..-+. +..+ +. .++++.+++.++........+..+.+ .| ......+..|
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~-l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k----~G~~~~v~sR~~F 81 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGT-LGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAK----TGLSTHLLARFSF 81 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCcCHHHHHHHHh
Confidence 445 778866554444333222222222 2221 22 36666666666555444444444443 44 4555667789
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
|.+.+.+.+....+..+...+.+....+..+...++ .+. ....++..++.......
T Consensus 82 G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------~~~----------------~~~~~i~~~l~~~~~~~ 137 (404)
T PRK11017 82 GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------LDI----------------NLLIVLSGLLMTVTAYF 137 (404)
T ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------CCH----------------HHHHHHHHHHHHHHHHH
Confidence 998888888777776666666666555555444322 111 11233444555666778
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcccee-ccCCCCCCCCChHHHHHHHHHHHHH-hhhhhhhhhhhhhhcCCCCCc
Q 010416 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSPFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDL 292 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~p~k~~ 292 (511)
|.|...+++++......+..+...+....+.+ .+......+.+...+..++....-. ..+.-..+.++...|++++ .
T Consensus 138 G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~ 216 (404)
T PRK11017 138 GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-A 216 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc-e
Confidence 88999999988877766655544443322221 1111111122223455544443322 3455667888888888644 3
Q ss_pred hHHHHHHHHHHHHH
Q 010416 293 PIGILGSLLICAAL 306 (511)
Q Consensus 293 p~ai~~~~~~~~~~ 306 (511)
-.+...+..+...+
T Consensus 217 ~~~~~lg~~i~~~~ 230 (404)
T PRK11017 217 VLATMVAFFLGNSL 230 (404)
T ss_pred eehhHHHHHHHHHH
Confidence 35555554444333
No 65
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.84 E-value=5.5e-05 Score=77.64 Aligned_cols=243 Identities=10% Similarity=0.046 Sum_probs=127.8
Q ss_pred CCCcccccChhHHHHHHhcccccchhhhchhhhhhhc-C-chHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhH
Q 010416 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDA-G-PGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (511)
Q Consensus 54 ~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~-G-~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~ 131 (511)
.++.+|+.++++...+=++..+...-+..-......+ + +.++++.+++.++........+..+.++-. ......+
T Consensus 7 vp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl---~~~v~sR 83 (442)
T TIGR00800 7 VKEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL---PFPVLSR 83 (442)
T ss_pred CCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC---Ccchhhh
Confidence 3444666788888877666554433333332222221 1 236666666666655555555555554422 5666777
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccCCCccccCCCcccccCcchhhHHHHHHH-HHHH
Q 010416 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILL-ALLT 209 (511)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 209 (511)
..||.+.+.+.+....+..+...+.++...++.+..+++ +.|......++ . .....+..++. .+..
T Consensus 84 ~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~-~-----------t~~~~~~~~i~~~l~~ 151 (442)
T TIGR00800 84 ASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNG-M-----------TTLELICFIIFWALVL 151 (442)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCc-c-----------cHHHHHHHHHHHHHHH
Confidence 899999999999999888888888888888888777655 22211100110 0 00012222222 2222
Q ss_pred H-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccee-ccCC---CC--CCCCChHHHHHHHHHHHHHh-hhhhhhhhh
Q 010416 210 I-VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNW---SP--FAPNGFKEILTGATVVFFAY-VGFDAVANS 281 (511)
Q Consensus 210 ~-l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~~~-~G~e~~~~~ 281 (511)
. ....|.|...+.+.......++.+++++ ....+.+ ..+. .+ ..+....+++.++....-.. .+...++.+
T Consensus 152 ~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dy 230 (442)
T TIGR00800 152 VFLFFFGYKIRHLFEWLAVVPPFAAFGMLI-WALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDF 230 (442)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhh
Confidence 2 3445666555555555444444333333 2222211 1111 11 11223445666555543333 455678889
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010416 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLV 313 (511)
Q Consensus 282 ~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~ 313 (511)
+...|+++ +-.++...+.....+...+....
T Consensus 231 sRy~~~~~-~~~~~~~~~~~~~~~~~~~~g~~ 261 (442)
T TIGR00800 231 TRFGKSKK-TAIWGQFLALPGGFTLTCFFGIL 261 (442)
T ss_pred hhhcCCcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 99998864 44455555555544444443333
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.79 E-value=0.00014 Score=75.62 Aligned_cols=283 Identities=13% Similarity=0.109 Sum_probs=151.1
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHH---HHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHH
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTIS---FLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~---~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~ 133 (511)
.|++++|....-.+++.++++-+.. ++.++..|-...+.+ .....+.....+.-+.++.++.. .=..+++.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN--AVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence 6888888766666666666655554 445555432222211 11121222234445566666653 56788999999
Q ss_pred hchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 134 FNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 134 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
||++ .....+....+..+..........+..++.+++ .|.+ ..+.+..+++.....
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------i~~~---------------~~iii~~~iv~iYt~ 174 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------ISYE---------------TGLLIFGITVALYTA 174 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHH
Confidence 9854 566667766666666777777788887777554 1222 122223334455566
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce-------------eccCCCCCCCCChHH--HHHH-HHHHHHHhhhhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNGFKE--ILTG-ATVVFFAYVGFD 276 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~G~e 276 (511)
.-|.|...+...+-..+.++..+++....+... +++.+.+..+.++.+ .... .....+...+..
T Consensus 175 ~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p 254 (483)
T PRK09442 175 FGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLP 254 (483)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCC
Confidence 678888888777776666555544433222111 111112222222111 1111 111122222332
Q ss_pred hhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH---hcccccCCCCCChHHHHHHHcchhHHHHHHHHHHHHHH
Q 010416 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT---GMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (511)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 353 (511)
...+-.-..||+ |+..|+..++.....++++...+.-. ...|.. .+++..+....++..++++..++..+.+.+.
T Consensus 255 ~~~qR~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~-~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~ 332 (483)
T PRK09442 255 HTAVRCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDL-TVPDKVIPTLMLKVLPPFAAGIFLAAPMAAI 332 (483)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCccchHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 222222235665 67888888887666666554433321 122321 1234455566667777787777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 010416 354 TTTLLVGLYVQSRL 367 (511)
Q Consensus 354 ~~~~~~~~~~~sR~ 367 (511)
.++..+.+.+.+=.
T Consensus 333 mST~~s~l~~~ss~ 346 (483)
T PRK09442 333 MSTVDSQLLQSSST 346 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665553
No 67
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.72 E-value=0.00042 Score=71.89 Aligned_cols=283 Identities=13% Similarity=0.071 Sum_probs=151.9
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCch-HHHH---HHHHHHHHHHHHHHHHHHhhcCccccCcceehhHH
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPG-VTIS---FLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~-~~~~---~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~ 132 (511)
.|+++++....-.+++.+|++-+.. ++..+.. |.. ..+. +..+.+.....+.-+.++.++.. .-..++|.++
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~ 115 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNY-GLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN--AITINDVLKA 115 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHH
Confidence 6889999888777777777666654 4444444 332 1111 11122212223334455555553 5688899999
Q ss_pred Hhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHH
Q 010416 133 AFNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (511)
Q Consensus 133 ~~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 211 (511)
.||++ ...+.+....+..+..........+..++..++ .|.| ..+.+...+.....
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------i~~~---------------~~iii~~~iv~iYt 172 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------LSYL---------------TALFIFSSSVLIYT 172 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHH
Confidence 99954 566777666666666666667777777777544 2222 12223333455566
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce-e------------ccCCCCCCCCChH--HHHHHH-HHHHHHhhhh
Q 010416 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-D------------VSNWSPFAPNGFK--EILTGA-TVVFFAYVGF 275 (511)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~--~~~~~~-~~~~~~~~G~ 275 (511)
..-|.|...+...+-..+.++..+++....+... + ++.++++.+.++. .+...+ ....+...+.
T Consensus 173 ~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 252 (471)
T TIGR02119 173 TFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGL 252 (471)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCc
Confidence 6678898888877777666655554444333221 1 1111122222211 111111 1111222233
Q ss_pred hhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc--ccccCCCCCChHHHHHHHcchhHHHHHHHHHHHHHH
Q 010416 276 DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM--VPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (511)
Q Consensus 276 e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 353 (511)
....+-.-..||+ |+..|+..++......++....+.-... ..++..+++..+.....+..++++..++..+.+.+.
T Consensus 253 p~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~ 331 (471)
T TIGR02119 253 PQTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAI 331 (471)
T ss_pred hHHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHH
Confidence 2223334445664 7788998888776666554433332111 112211234455555566667777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 010416 354 TTTLLVGLYVQSRL 367 (511)
Q Consensus 354 ~~~~~~~~~~~sR~ 367 (511)
+++..+.+.+.+-.
T Consensus 332 mST~~s~l~~~ss~ 345 (471)
T TIGR02119 332 MSTVNSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666655
No 68
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.66 E-value=0.00034 Score=69.97 Aligned_cols=318 Identities=18% Similarity=0.165 Sum_probs=177.0
Q ss_pred HHHhcccccchhhhchhhhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHHHH
Q 010416 68 LIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (511)
Q Consensus 68 ~l~i~~~ig~gi~~~~~~~~~~~G~---~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~ 144 (511)
...++.-.|+|-..-|...-..+|. .+.++++++++..=..+..-. -+ .||.+.=..+..||+.|.+...
T Consensus 10 ~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~------~~-~~~~~~~l~~~v~~~f~~if~~ 82 (427)
T PF05525_consen 10 FALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV------AK-SGGGIEDLASRVGPKFALIFTI 82 (427)
T ss_pred HHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH------hh-cCCCHHHHhcccCcHHHHHHHH
Confidence 3444445788888888877777775 277788888777544443311 12 4555555566677888877765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010416 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNS 224 (511)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 224 (511)
...+.--... +.....+...... +.|.++. +..+ ...+..+++..+..++.++.-|...++.+
T Consensus 83 ~i~l~IGP~~-aiPRtaa~sfe~~--i~p~~~~-~~~~-------------~~~ifs~iFF~i~~~l~~~p~kivd~iGk 145 (427)
T PF05525_consen 83 LIYLSIGPLF-AIPRTAAVSFEMG--IAPFFPE-NSNI-------------SLLIFSIIFFAITYLLSLNPSKIVDRIGK 145 (427)
T ss_pred HHHHHHHhcc-cCcchhhhhHHHh--hhccCCc-cccc-------------chhhhhHHHHHHHHHHHhchhhHHHHHHH
Confidence 5443321110 1111111111110 2233222 1111 22567788888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccceeccCCCC---CCCCCh-HHHHHHH----HHHHHHhhhhhhhhhhhhhhcCCCCCchHHH
Q 010416 225 CMTVVKVIIVIVVIFAGAFEVDVSNWSP---FAPNGF-KEILTGA----TVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (511)
Q Consensus 225 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~----~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (511)
+++.+.++.+.++++.++.+...+.-.+ +.++.+ .|+..+. ..+...|...-..+--....||+ |+..|.+
T Consensus 146 ~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~ 224 (427)
T PF05525_consen 146 FLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYT 224 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHH
Confidence 9999999999999988887543222211 111111 1222221 22333333333333333334443 3344444
Q ss_pred HH----HHHHHHHHHHHHHHHHHhcccc--cCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 297 LG----SLLICAALYVGVSLVLTGMVPY--KFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (511)
Q Consensus 297 ~~----~~~~~~~~y~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~ 370 (511)
.. +...-.++|....+.-....+. ++.+..+.+..+.++..|+.+..++.+...++|++++.+-..++++...+
T Consensus 225 ~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~ 304 (427)
T PF05525_consen 225 IKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSE 304 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3444444444433332222221 12233445666777888899999999999999999999998888887765
Q ss_pred HHhCCCCchHHhhhcCCCCCchH-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010416 371 LGRDGLLPSIFAKVHPKRHTPVH-SQVWVGIVAGILAGLFNVRVLSHILSVGTLTGY 426 (511)
Q Consensus 371 ~a~dg~lP~~~~~~n~~~~~P~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 426 (511)
. .+| .+++ .+++..+++.++..+ .++.++++..-...+.|
T Consensus 305 ~-------------~~k--isY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 305 L-------------FPK--ISYKVWVIIFTIFSFIIANL-GLDQIIKISVPILMFIY 345 (427)
T ss_pred H-------------hcc--cChHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHh
Confidence 3 222 2233 333344555444443 67777777653333333
No 69
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.61 E-value=0.00094 Score=69.45 Aligned_cols=280 Identities=12% Similarity=0.060 Sum_probs=138.7
Q ss_pred ccccChhHHHHHHhcccccchhhh-chhhhhhhcCchHHHHHHHHHHH-HHHHHHHHHHHhhcCc----cccCcceehhH
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFV-VTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFP----AVVGGAYLYAY 131 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~-~~~~~~~~~G~~~~~~~ll~~~~-~~~~~~~~ael~~~~p----~~~Gg~y~~~~ 131 (511)
.|+++++....-..++.+++..+. .++..+.. |....+..+ +..+ .....+.+++.-+++. + .=..++|.+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~-G~~~~~~~~-g~~~~~~~~~~~~~~~~r~~~~~~~~-~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVT-GLSELWIAI-GLTIGAYINWKFVAPRLRVYTEAAHN-SITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHh-hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhcC-CccHHHHHH
Confidence 688888876654445455544444 45555554 443222221 2222 2222333444333221 2 335789999
Q ss_pred HHhch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHH
Q 010416 132 TAFNE---LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (511)
Q Consensus 132 ~~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (511)
+.||+ ....+.+....+......+......+..++.+++ .|.| ..+.+...+..
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------i~~~---------------~~iii~~~i~~ 168 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------LDYK---------------TGLLIGALIIV 168 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccHH---------------HHHHHHHHHHH
Confidence 99984 4555566666666666666666777777776543 1222 22233344555
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccee-------------ccCCCCCCCCChHHHHHHHHHHHHHhhhh
Q 010416 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-------------VSNWSPFAPNGFKEILTGATVVFFAYVGF 275 (511)
Q Consensus 209 ~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 275 (511)
.....-|.|...+...+=+.+.++..+++.+..+...+ ++..+.+.+..+..+... ..|.+ |.
T Consensus 169 ~Yt~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~-g~ 244 (487)
T TIGR02121 169 IYTFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISL---LAWGL-GY 244 (487)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHH---HHHHH-Hh
Confidence 66667788888887776666655544433333222111 111111112222222222 12221 21
Q ss_pred hhhhhhhhh---hcCCCCCchHHHHHHHHHHHHHHHHHHHH---HHhcccc-cC---CCCCChHHHHHHHcchhHHHHHH
Q 010416 276 DAVANSAEE---SKKPQRDLPIGILGSLLICAALYVGVSLV---LTGMVPY-KF---LDEDAPLSDAFASRGLKYVSVLI 345 (511)
Q Consensus 276 e~~~~~~~E---~k~p~k~~p~ai~~~~~~~~~~y~~~~~~---~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 345 (511)
-...++... .||+ |+..|+..++.....+.++...+. .....+. ++ .+++..+....+...++++..++
T Consensus 245 ~~~p~~~qR~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~ 323 (487)
T TIGR02121 245 FGQPHIIVRFMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGIL 323 (487)
T ss_pred ccchHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHH
Confidence 122333332 3553 677788777654433322211111 1111111 11 12234445555666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010416 346 SFGAVAGLTTTLLVGLYVQSRLY 368 (511)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~sR~l 368 (511)
..+.+.+..++..+.+.+.+-.+
T Consensus 324 ~a~ilaA~mST~~s~l~s~ss~~ 346 (487)
T TIGR02121 324 LAAILAAIMSTISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788887777777776554
No 70
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.60 E-value=0.00029 Score=69.64 Aligned_cols=248 Identities=15% Similarity=0.093 Sum_probs=130.9
Q ss_pred hHHHHHHhcccccchhhhchhhhh-hhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHH
Q 010416 64 FELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLV 142 (511)
Q Consensus 64 ~~~~~l~i~~~ig~gi~~~~~~~~-~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~ 142 (511)
...+.-++|+.+|.|-....+... .+||.+-++-|++..+. .-.-..++|++--.-. .++...--++..+++.....
T Consensus 12 lGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~-~GiPlli~Ef~iGr~~-~~~~~~a~~~l~~~~~~~~~ 89 (439)
T COG0733 12 LGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLL-VGIPLLLAEFAIGRRG-RKNAVGAFRKLAPKKKWEWI 89 (439)
T ss_pred HHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHH-HhHHHHHHHHHhhhhc-CCChhHHHHHhccCccchhh
Confidence 334455677779988888866554 55555544444443333 2233344555432221 11222222222222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhh-HH
Q 010416 143 FAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE-SS 220 (511)
Q Consensus 143 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~ 220 (511)
||.-.+.......-|....+-.+...+. +...+. .+.........+...|.......-+++..+..++..+|++. ..
T Consensus 90 G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GIE 168 (439)
T COG0733 90 GWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-DTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGIE 168 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 4443333333333333333332222211 111111 00110000111122333334455567777777888889876 89
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccceecc-----CCCCCCC--CChHHHHHHHHHHHHHhh-hhhhhhhhhhhhcCCCCCc
Q 010416 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVS-----NWSPFAP--NGFKEILTGATVVFFAYV-GFDAVANSAEESKKPQRDL 292 (511)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~-G~e~~~~~~~E~k~p~k~~ 292 (511)
|.+.++.....+.++++.+-.+...+.. -+.|..+ .+...+..++.-++|+.. |+-...+++.-.++ +.|+
T Consensus 169 k~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~l 247 (439)
T COG0733 169 KANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KSDL 247 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccch
Confidence 9999998888877777776655432110 1111111 113467888889999885 88888888888876 6889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 010416 293 PIGILGSLLICAALYVGVSLVLT 315 (511)
Q Consensus 293 p~ai~~~~~~~~~~y~~~~~~~~ 315 (511)
++.-.........+-++..+.+.
T Consensus 248 ~~sa~~v~~~n~~~s~lAGl~If 270 (439)
T COG0733 248 VSSALSIVLLNTLISLLAGLVIF 270 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 99888887777777666555554
No 71
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.59 E-value=0.0011 Score=66.75 Aligned_cols=246 Identities=14% Similarity=0.037 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010416 93 GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 172 (511)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (511)
.++++.+++.++........+..+.++.. ......+..||++.+.+.+....+..+...+.+....++.++.+.+.
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl---~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~- 105 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL---SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGR- 105 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc---CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 46666666666655544454554444422 55667777999999999999999988888888888888888886541
Q ss_pred cccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCC
Q 010416 173 PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP 252 (511)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 252 (511)
.++ ..+. ......+.++.......|.|..++++.+...+..+..+........+.+......
T Consensus 106 -~~~-~~~~----------------~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 167 (386)
T TIGR02358 106 -LFG-EESP----------------MLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWN 167 (386)
T ss_pred -hcC-CCch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcC
Confidence 111 1111 1222333445666777899999999999988877777665554444333221111
Q ss_pred CCCCChHHHHHHHHHHHHH-hhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHH
Q 010416 253 FAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSD 331 (511)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 331 (511)
.+.. .++..++...... ..+....++++...|+| |+.-++..++..+...+..+.........+.+ +| .+
T Consensus 168 -~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~-----d~-~~ 238 (386)
T TIGR02358 168 -RAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT-----DI-IS 238 (386)
T ss_pred -CCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CH-HH
Confidence 1111 3444443332211 12333477888888876 44557777776666666666555555443322 23 23
Q ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 332 AFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (511)
Q Consensus 332 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 372 (511)
.....+.. ....+..+++..++.....+.++--+..+.
T Consensus 239 ~~~~~g~~---~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~ 276 (386)
T TIGR02358 239 ILAGAGLG---IPALLIILLSTVTTTFMDIYSAAISTGNLL 276 (386)
T ss_pred HHHhccHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44333322 223344455555555555666666666543
No 72
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.58 E-value=0.00023 Score=72.30 Aligned_cols=284 Identities=14% Similarity=0.039 Sum_probs=156.4
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhch
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~ 136 (511)
.|+++++....-.+++.++++.+.. ++.++.. |...++..+...+.....+..+.+..++.+ .-..++|.++.||+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAY-GFAIGFYELGALVLLIILGWLFVPIFINNG--AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHhCc
Confidence 4788888777777676776655554 5555555 433333233333334556666666665544 57888999999998
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhh
Q 010416 137 -LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (511)
Q Consensus 137 -~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 215 (511)
....+.+....+..+...+......+..++..++ .|.| ..+.+...++......-|
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~---------------~~~ii~~~i~~~Yt~~GG 135 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLY---------------LSLLLLGAITILYTVFGG 135 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHH---------------HHHHHHHHHHHHHHHHcc
Confidence 5666777878888888888888888888877554 1222 222233334455566678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcccee-c-------cCCCC----------CCCCC---hHHHHHH---HHHHHHH
Q 010416 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-V-------SNWSP----------FAPNG---FKEILTG---ATVVFFA 271 (511)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~-------~~~~~----------~~~~~---~~~~~~~---~~~~~~~ 271 (511)
.|...+...+-..+.++..+++.+..+.+.+ . .+..+ ...+. ...+..+ .......
T Consensus 136 ~~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 215 (407)
T TIGR00813 136 LKAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALW 215 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHH
Confidence 8888887777666655544444333322211 0 00000 00100 0011111 1111111
Q ss_pred hhhhhh-hhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH---hcccc--cC------CCCCChHHHHHHHcchh
Q 010416 272 YVGFDA-VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT---GMVPY--KF------LDEDAPLSDAFASRGLK 339 (511)
Q Consensus 272 ~~G~e~-~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~---~~~~~--~~------~~~~~~~~~~~~~~~~~ 339 (511)
+ +.+. ..+=.--.|| +|+.+|+..++.....++++...+.-. ...+. ++ .+++..+....++..++
T Consensus 216 ~-~~~~~~~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~ 293 (407)
T TIGR00813 216 Y-WTNQVIVQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPP 293 (407)
T ss_pred H-hcCHHHhhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCc
Confidence 1 1111 0111122355 477889988887766665544332222 12221 11 12344455566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 340 YVSVLISFGAVAGLTTTLLVGLYVQSRLYL 369 (511)
Q Consensus 340 ~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~ 369 (511)
++.-++.+..+.+..++..+.+.+.+-.+.
T Consensus 294 ~l~gl~~agilaA~mST~~s~l~a~ss~~~ 323 (407)
T TIGR00813 294 GLAGLFLAAILAAVMSTLSSQLNSASTVFT 323 (407)
T ss_pred chHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 877777778888888877777777766543
No 73
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.46 E-value=0.0031 Score=65.42 Aligned_cols=286 Identities=14% Similarity=0.040 Sum_probs=154.1
Q ss_pred cccccChhHHHHHHhccc-cc-chhhhchhhhhhhcCchHHHHHH---HHHHHHHHHHHHHHHHhhcCccccCcceehhH
Q 010416 57 LLRRLGLFELVLIGVGAS-VG-AGIFVVTGTVARDAGPGVTISFL---LAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (511)
Q Consensus 57 l~r~l~~~~~~~l~i~~~-ig-~gi~~~~~~~~~~~G~~~~~~~l---l~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~ 131 (511)
-.|+++.+ +..++.+.. .+ ...+..|+.++..|-...++... ...+.....+--..+++ +-++ .=..++|.+
T Consensus 36 ~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~-~~T~~d~l~ 112 (493)
T COG0591 36 GGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARG-ATTIPDFLE 112 (493)
T ss_pred cCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC-CccHHHHHH
Confidence 36888888 666655544 44 45555677777654444333333 44444556666677777 4444 678889999
Q ss_pred HHhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHH
Q 010416 132 TAFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (511)
Q Consensus 132 ~~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (511)
+.|| +....+.+....+..+...+......+..++..++ .+.+ ..+.+....+...
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~---------------~~~~~~~~~v~~Y 169 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYV---------------TGILIGALIVALY 169 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHH---------------HHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999988866443 1111 2233344555555
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce-----------eccC---CCCCCC-CChHHHH---HHHHHHHHHh
Q 010416 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-----------DVSN---WSPFAP-NGFKEIL---TGATVVFFAY 272 (511)
Q Consensus 211 l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~---~~~~~~-~~~~~~~---~~~~~~~~~~ 272 (511)
...-|.|...+....=+.+.++.+..+.+...... ..++ .+++.. ....... .........+
T Consensus 170 t~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (493)
T COG0591 170 TFLGGLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYF 249 (493)
T ss_pred HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhh
Confidence 66667777776655544444444443333322210 1111 111111 1111111 1111123333
Q ss_pred hhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHH----Hhccc-cc-----CCCCCChHHHHHHHcchhHHH
Q 010416 273 VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL----TGMVP-YK-----FLDEDAPLSDAFASRGLKYVS 342 (511)
Q Consensus 273 ~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~----~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~ 342 (511)
...+...+.-. .|++ |+.||.......+-.+.++...+++ ....+ .+ +.+++..+........++|..
T Consensus 250 ~~~~i~~r~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 327 (493)
T COG0591 250 GQPHILPRFMA-AKSI-KSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIA 327 (493)
T ss_pred cCchhhhhhhh-hccH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHH
Confidence 33344444444 4444 3344333333333333222221111 11111 11 123344566666777788877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 343 VLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (511)
Q Consensus 343 ~~~~i~~~~~~~~~~~~~~~~~sR~l~~ 370 (511)
-+.....+.+..++..+.+...+-.+-.
T Consensus 328 g~~~~ailaAvmSt~ss~ll~~ss~~t~ 355 (493)
T COG0591 328 GLLLAAILAAVMSTASSQLLVASSAITR 355 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 7777777777777776666666655443
No 74
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.43 E-value=2.3e-05 Score=78.35 Aligned_cols=251 Identities=14% Similarity=0.098 Sum_probs=136.9
Q ss_pred ccccChhHHHHHHhcccccchhhhchhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhch
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~ 136 (511)
+++-+.+..+.-...++.|+|++..|. +....|- ..++...+.+.+.......+.+.+.+.++ . ......++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~-afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPY-AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-R-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHH-HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C-CHHHHHHHHcCC
Confidence 455567777777888899999999886 4455565 37778888888888889999999999987 3 444555556665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhh
Q 010416 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (511)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 216 (511)
................ ..++.....+.+....... ..++|.... +.+..-...+....++....+.+ ..
T Consensus 80 ~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~-----~~~~~~~~~---~~~~~~~ill~~~~~i~pLsl~k--~l 148 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSL-----FLDEEGGSH---YLDRNFLILLVLLFIILPLSLLK--NL 148 (411)
T ss_pred CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhc-----ccccccccc---cccceeEeehHHHHHHHHHHHHH--hh
Confidence 4422221111111111 1111111222221111100 001110000 00000001122222222222222 21
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccceec--cCCCCCCCCCh--HHHHHHHHHHHHHhhhhhhhhhhhhhhcCCC-CC
Q 010416 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAPNGF--KEILTGATVVFFAYVGFDAVANSAEESKKPQ-RD 291 (511)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-k~ 291 (511)
. .-+.....+....+.++.+.+......+. ....+..+++. .+++.++....++|..++.....-+|+|||+ |+
T Consensus 149 ~-~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~ 227 (411)
T KOG1305|consen 149 D-SLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKK 227 (411)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHH
Confidence 1 22222233333333333323222222111 11122223332 4788999999999999999999999999996 67
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 010416 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFL 323 (511)
Q Consensus 292 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~ 323 (511)
+.+....+...+.++|.......+..++++..
T Consensus 228 i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~ 259 (411)
T KOG1305|consen 228 IQRVSNIAIILATLIYLLTGLFGYLTFGDLVK 259 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheecccch
Confidence 88999999999999999988888877776653
No 75
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.41 E-value=0.0027 Score=64.66 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=53.4
Q ss_pred ccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccC-cceehhHHHhchhhHHHHHHHHHHHHHHH
Q 010416 75 VGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIG 153 (511)
Q Consensus 75 ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~ 153 (511)
+|.|-..+..+.-+.-|...+|..+++.+ ....+.|++.|+-...| +..+-.++.+||.+++.......+....+
T Consensus 48 idpG~i~t~~~aGA~~Gy~LLW~llls~~----~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~ 123 (439)
T PRK00701 48 MDPGNWATNIQGGSQFGYTLLWVILLSNL----MAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMAT 123 (439)
T ss_pred ecchHHHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHH
Confidence 44444433333333344445555555444 44555666666554334 77888889999988887766666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 010416 154 AASIARSLASYVVSI 168 (511)
Q Consensus 154 ~~~~~~~~~~~~~~~ 168 (511)
...+..+.+.-++.+
T Consensus 124 ~~~e~~G~a~al~ll 138 (439)
T PRK00701 124 DLAEVIGAAIALKLL 138 (439)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555543
No 76
>PLN00151 potassium transporter; Provisional
Probab=98.41 E-value=0.00013 Score=76.94 Aligned_cols=286 Identities=10% Similarity=0.005 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc---ceeccCCCCCCCC---------ChHHHHHHH
Q 010416 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EVDVSNWSPFAPN---------GFKEILTGA 265 (511)
Q Consensus 198 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~ 265 (511)
..+++++++.+..+.-+|....++ .++.+.++-++.+..+++. +.++.-+..++|. +..+| ..+
T Consensus 275 V~Is~~ILv~LF~~Q~~GT~kVg~---~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw-~~L 350 (852)
T PLN00151 275 VMISVAFLVILFSVQRFGTSKVGF---AFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKAW-SAL 350 (852)
T ss_pred hhHHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCceE-EEe
Confidence 567777777777777778655554 5555555555444444443 3333333333331 11111 123
Q ss_pred HHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHHH
Q 010416 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (511)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (511)
.-.+.+.+|.|+...=-+-. .+|.+..+-..-+.=+.++--...-+....-| ++ ..+|+... ..+++.+-+
T Consensus 351 GgVvLciTGaEALfADLGHF--g~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~~--~~npFy~s----vP~~~~wP~ 421 (852)
T PLN00151 351 GGCVLCATGSEAMFADLGYF--SVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-DS--AEQIFFSS----VPSSLFWPV 421 (852)
T ss_pred cceeeeeccchhhhcccCCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCc-cc--ccCcHHHh----CCchhHHHH
Confidence 33445668888754433333 23445444433222222221112222222212 11 12233322 333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHhhhcCCCC----CchHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 010416 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKRH----TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (511)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~n~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (511)
.+.+.++.+-+.++.+.++--++.+.-+-|.+|+ +.-+++++.. .|..-.+++.....+...+.+.+.+.+.+++
T Consensus 422 ~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGi 501 (852)
T PLN00151 422 FLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGI 501 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhh
Confidence 5555555555556666666666666677799994 4556665433 5555444443333333333477888888877
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchh-hHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHHHHHHHHHHh
Q 010416 421 GTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWR-QGVICLIIIACCGFGAGL--FYRINASYILLIVAVVIAVLASAM 497 (511)
Q Consensus 421 ~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 497 (511)
+.....+++.+-....-+...+. +.+. ..+..+++.+=..++... -+..+.|...++..++..+...|.
T Consensus 502 AV~~vM~iTT~L~~lV~~~~W~~--------~~~~~~~f~~~F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM~~W~ 573 (852)
T PLN00151 502 AEVGVMMVSTILVTLVMLLIWQT--------NIFLVLCFPVVFLSVELVFFSSVLSSVGDGGWIPLVFASVFLCIMYIWN 573 (852)
T ss_pred hhhhhhhHHHHHHHHHHHHHcCc--------cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 76555544444332221111111 2222 112222222222333222 244568888888888877777776
Q ss_pred hhccccc
Q 010416 498 LCLRHVS 504 (511)
Q Consensus 498 ~~~~~~~ 504 (511)
+-+++++
T Consensus 574 yG~~~~~ 580 (852)
T PLN00151 574 YGSKLKY 580 (852)
T ss_pred HHHHHHH
Confidence 5444433
No 77
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.39 E-value=0.0027 Score=62.03 Aligned_cols=281 Identities=17% Similarity=0.145 Sum_probs=151.9
Q ss_pred hhHHHHHHhcccccchhhhchhhhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhH
Q 010416 63 LFELVLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (511)
Q Consensus 63 ~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~---~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g 139 (511)
.+..-++.++--.|+|-..-|...-...|. .+.++++++++..=..+..- .-. .||.++=..+..||+.|
T Consensus 7 ~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa------~a~-~g~~~~~l~~~i~~~fg 79 (431)
T COG1114 7 IIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIA------VAL-YGGGVESLATRIGPWFG 79 (431)
T ss_pred HHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHH------hhc-cCCCHHHHhhhccchHH
Confidence 344445566656888888888866666675 37777888777654333331 112 56666666667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhH
Q 010416 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (511)
Q Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 219 (511)
.+.....++.--... +...+.+....- .+.|..+++.+. ...+...+...+..++.+..-|..
T Consensus 80 ~~f~~~iyLsIGPff-AiPRt~~vsfe~--~i~p~~~~~~~~--------------~l~ifs~ifF~ia~~~sl~pskli 142 (431)
T COG1114 80 VLFAIAIYLSIGPFF-AIPRTGAVSFEV--GISPLLGDSSLP--------------SLFIFSVIFFAIAYLFSLNPSKLI 142 (431)
T ss_pred HHHHHHHHHHhcccc-cCCcccchhHHH--hhhcccCCCcch--------------HHHHHHHHHHHHHHHHHcCHHHHH
Confidence 776654443321110 000111100000 022333332222 225677888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccceeccCC--------CCCCCCCh-HHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCC
Q 010416 220 SVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW--------SPFAPNGF-KEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (511)
Q Consensus 220 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k 290 (511)
.|+.++++.++++.++++.+..+...+..-- +++. +|+ .|....=..+...|...-..+.=....+++ |
T Consensus 143 d~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~-~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~ 220 (431)
T COG1114 143 DRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFS-KGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-K 220 (431)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-H
Confidence 9999999999999998888886664332211 1111 111 112222233444554443333333334443 3
Q ss_pred CchHHHHHHHHHHHHHHHHHH--HHHHhcccccCCC----CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 291 DLPIGILGSLLICAALYVGVS--LVLTGMVPYKFLD----EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (511)
Q Consensus 291 ~~p~ai~~~~~~~~~~y~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 364 (511)
+..|....+-++..+.-...- +...+....+... +..-+....++..|+.+..++.+...++|+.+..+...++
T Consensus 221 ~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~ 300 (431)
T COG1114 221 QIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVAC 300 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333333322222211 1112221121111 1223344456677888888999999999999888888777
Q ss_pred HHHHH
Q 010416 365 SRLYL 369 (511)
Q Consensus 365 sR~l~ 369 (511)
+....
T Consensus 301 aefF~ 305 (431)
T COG1114 301 AEFFS 305 (431)
T ss_pred HHHHH
Confidence 76644
No 78
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.30 E-value=0.0055 Score=61.45 Aligned_cols=277 Identities=14% Similarity=0.092 Sum_probs=149.5
Q ss_pred HHHhcccccchhhhchhhhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHHHH
Q 010416 68 LIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (511)
Q Consensus 68 ~l~i~~~ig~gi~~~~~~~~~~~G~---~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~ 144 (511)
.+-++.-.|+|-..-|...-..+|. .+.++++++++..=..+..- .. + .||.++-..+..||+.|.+...
T Consensus 15 ~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiia----va--~-~~g~~~~l~~rv~~~f~~~f~~ 87 (439)
T PRK15433 15 FMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVA----LA--K-VGGGVDSLSTPIGKVAGVLLAT 87 (439)
T ss_pred HHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH----Hh--h-cCCCHHHHhhhcchHHHHHHHH
Confidence 3444445888988888877777775 27777877777754433331 11 2 4444444555567777776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010416 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNS 224 (511)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 224 (511)
...+.--... +...+.+....- .+.|..+++ .....+..+++..+..++..+.-|...++.+
T Consensus 88 ~i~l~IGP~~-aiPRtaavsfEm--~i~p~~~~~---------------~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK 149 (439)
T PRK15433 88 VCYLAVGPLF-ATPRTATVSFEV--GIAPLTGDS---------------ALPLFIYSLVYFAIVILVSLYPGKLLDTVGN 149 (439)
T ss_pred HHHHHHhhcc-ccCCccccchhh--eeeccCCcc---------------cHHHHHHHHHHHHHHHHHHcChhhHHHHhHH
Confidence 4333211110 000111100000 011211110 1122456778888888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccceeccCCCC---CCCCCh-HHHHHHH----HHHHHHhhhhhhhhhhhhhhcCCCCCchH--
Q 010416 225 CMTVVKVIIVIVVIFAGAFEVDVSNWSP---FAPNGF-KEILTGA----TVVFFAYVGFDAVANSAEESKKPQRDLPI-- 294 (511)
Q Consensus 225 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~----~~~~~~~~G~e~~~~~~~E~k~p~k~~p~-- 294 (511)
+++.+.++.+.++++.++.+.....-.+ +..+.+ .|+..+. ..+...|...-..+--....||+ |++.|
T Consensus 150 ~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t 228 (439)
T PRK15433 150 FLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYT 228 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHH
Confidence 9999999999988888877532111111 111101 1222221 12223333322222223335554 33334
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhccc-ccCC-CCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 295 --GILGSLLICAALYVGVSLVLTGMVP-YKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (511)
Q Consensus 295 --ai~~~~~~~~~~y~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~ 370 (511)
+-.++.+...++|....+.-....+ .++. +..+-......+..++++..++.+...++|++++.+...+.++.+.+
T Consensus 229 ~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 229 VWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555544443332222 1122 22333444556777889999999999999999999998888887664
No 79
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.27 E-value=0.0054 Score=61.32 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=60.6
Q ss_pred ccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccC-cceehhHHHhch
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNE 136 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~G-g~y~~~~~~~g~ 136 (511)
+|++....--++.-.+-++.|-+.+..+.-+.-|...++..++.-++ .....|++.++-..+| |.-+-++|.++|
T Consensus 14 ~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~----~~~~Q~~~arLgivTG~~laq~ir~~y~~ 89 (416)
T COG1914 14 RKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLM----AYILQELSARLGIVTGKGLAEAIRERYLP 89 (416)
T ss_pred HHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCcHHHHHHHHccc
Confidence 34444444333333333444433333333333344444444444444 4444444444433233 467788888999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010416 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILE 170 (511)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (511)
.+++.......+......-.+..+.+--++.+++
T Consensus 90 ~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 90 GLGILLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9888887777777777777777777777766543
No 80
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.23 E-value=0.0001 Score=74.87 Aligned_cols=285 Identities=16% Similarity=0.102 Sum_probs=135.0
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhch
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~ 136 (511)
.|+++++....-.+++.+|++-+.. ++..+.. |....+..+...+......+.++.--++.. .-..++|.++.||+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSY-GISGLWYAIGYAIGFLLFALFFAPRLRRSG--AVTIPEYLEKRYGS 81 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT--GGGGHHHHHHHHHHHHHHHHTHHHHHHTT----SHHHHHHHHT-H
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcceeeeccccchhHHHHHHHHHHhhcccc--hhhhhhhhhhhcCC
Confidence 5788888777666666677665555 5555554 443223223333333344444444444332 56788999999998
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 137 LT--AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 137 ~~--g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
.. ..+.+....+..+...+......+..++..+++ |.+ ..+.+...++..+...-
T Consensus 82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi--------~~~---------------~~~~i~~~i~~iYt~~G 138 (406)
T PF00474_consen 82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI--------PYN---------------TAILIVGVIVIIYTFFG 138 (406)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------HH---------------HHHHHHHHHHHHTTCTT
T ss_pred chhhhhhcccccchhhhhhhhccccccccchhhccch--------hhh---------------HHHHHHHHHHHHhhhhh
Confidence 88 666666667777777788888888888775541 111 11222233333344455
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccce-------------eccCCCCCCCCCh---HHHHHHHHHHHHHhhhhhhh
Q 010416 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNGF---KEILTGATVVFFAYVGFDAV 278 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~e~~ 278 (511)
|.|...+...+-..+.++..+++.+..+... +++..+.+.|.+. .+.............|....
T Consensus 139 Gl~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 218 (406)
T PF00474_consen 139 GLRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGA 218 (406)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccc
Confidence 7888777666655555544444443332211 1100111112221 00011101101111233333
Q ss_pred hhhhhhh---cCCCCCchHHHHHHHHHHHHHHHHHH------HHHHhcccc----cCCCCCChHHHHHHHcchhHHHHHH
Q 010416 279 ANSAEES---KKPQRDLPIGILGSLLICAALYVGVS------LVLTGMVPY----KFLDEDAPLSDAFASRGLKYVSVLI 345 (511)
Q Consensus 279 ~~~~~E~---k~p~k~~p~ai~~~~~~~~~~y~~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (511)
.++..+. ||+ |+.+|+...+.....+++.... .......|. ++.+++..+....++..+++..-++
T Consensus 219 p~~~qR~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~ 297 (406)
T PF00474_consen 219 PHFWQRFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLF 297 (406)
T ss_dssp -HHHHHHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHH
T ss_pred hHHHHHHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHH
Confidence 5554443 443 6678888777654444443311 112222221 1122344556666777778877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 346 SFGAVAGLTTTLLVGLYVQSRLYL 369 (511)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~sR~l~ 369 (511)
....+.+..++..+.+.+.+-.+.
T Consensus 298 ~~~~~aA~~ST~~s~l~a~ss~~~ 321 (406)
T PF00474_consen 298 LAGILAAIMSTADSLLLAISSIFS 321 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhh
Confidence 777777777777777777666543
No 81
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.21 E-value=0.013 Score=61.93 Aligned_cols=154 Identities=11% Similarity=-0.025 Sum_probs=86.7
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHHHHHHHHHHH-HHHHHHHHHhhcCccccCcceehhHHHhc
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASV-LNALCYAELASRFPAVVGGAYLYAYTAFN 135 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ll~~~~~~-~~~~~~ael~~~~p~~~Gg~y~~~~~~~g 135 (511)
.|++++|....-..+..+++.-|.. ++.++.. |...++.. ++....+ ...+.++|--++.- .=-..+|.++.|+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~-G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g--~~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTS-GYDGLIYS-LGFLVGWPIILFLIAERLRNLG--RYTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHH-HHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHHHcC
Confidence 6888888665444444455444443 4445544 44322222 2333333 33444566554443 2355567777886
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 136 -ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 136 -~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
|....+.+....+..+..........+..++.+++ .|.| ..+.+...+...+...-
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------i~~~---------------~~iii~~~i~~~Yt~~G 198 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------LNYH---------------VAVVLVGILMVMYVLFG 198 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHHHhh
Confidence 55777777777766666667777777777776543 1222 12223333445555567
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 010416 215 GVGESSVLNSCMTVVKVIIVIVVI 238 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~ 238 (511)
|.|...+.+.+=..+.++..+++.
T Consensus 199 Gm~av~~td~iQ~~im~~g~i~~~ 222 (549)
T TIGR02711 199 GMLATTWVQIIKAVLLLFGATFMA 222 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777666655544443
No 82
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.19 E-value=0.0036 Score=62.37 Aligned_cols=252 Identities=14% Similarity=0.133 Sum_probs=126.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcCccc-cCcceehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010416 91 GPGVTISFLLAGAASVLNALCYAELASRFPAV-VGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (511)
Q Consensus 91 G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~-~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (511)
|...+|..+++.++.+ .+.|++.|+-.. ..+..+-.++.+||.+++.......+........+..+.+.-++.++
T Consensus 12 Gy~Llw~lll~~~~~~----~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~ 87 (358)
T PF01566_consen 12 GYSLLWVLLLSNLLKY----VFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF 87 (358)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555544 445555554421 34677777889999999998888888877777777766666555432
Q ss_pred hhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccee
Q 010416 170 ELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL---CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD 246 (511)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 246 (511)
+ .|.+ ....+..+.+..+. ..+.|...++...+..+..+..+...+.. ..+
T Consensus 88 g--------~~~~----------------~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~--~p~ 141 (358)
T PF01566_consen 88 G--------IPLW----------------IWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIV--HPD 141 (358)
T ss_pred C--------CCcH----------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhc--chh
Confidence 1 2222 12222222222222 33445555554444444333222222221 222
Q ss_pred cc----CCC-CCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcC---CCCCc----hHHHHHHHHHHHHHHHHHHHHH
Q 010416 247 VS----NWS-PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKK---PQRDL----PIGILGSLLICAALYVGVSLVL 314 (511)
Q Consensus 247 ~~----~~~-~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---p~k~~----p~ai~~~~~~~~~~y~~~~~~~ 314 (511)
.. .+. |..|. ..++...+....+....++...+-+-..++ ++|+. -|....=..+..+...+.+.++
T Consensus 142 ~~~~~~g~~~P~~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai 220 (358)
T PF01566_consen 142 WGEVARGLVVPSIPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAI 220 (358)
T ss_pred HHHHhhhccCCCCcc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 22233 123444444444555555544433322221 11110 1122221112222222222221
Q ss_pred ----Hhccc-c-cCCCCCChHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010416 315 ----TGMVP-Y-KFLDEDAPLSDAFASRGL-KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (511)
Q Consensus 315 ----~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 373 (511)
..... . .+..+.....+.++...| ++...++.++.+.+.+++..+...++++.+.+.-+
T Consensus 221 ~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 221 LIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 11111 1 122333455666676667 79999999999999999999998888888887653
No 83
>PRK10484 putative transporter; Provisional
Probab=98.19 E-value=0.014 Score=61.38 Aligned_cols=289 Identities=13% Similarity=0.031 Sum_probs=137.7
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchH-HHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhc
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGV-TISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~-~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g 135 (511)
.|++++|-...-..++.+++.-+.. ++..+.. |... .+.+ ...+...+.++.++.--++.. .=..++|.++.||
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~-G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~--~~T~~e~l~~Ryg 112 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYAS-GMSVMAWEV-TAAIALIILALIFLPRYLKSG--ITTIPDFLEERYD 112 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHh-CHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC--CccHHHHHHHhcC
Confidence 6899998776666666666655554 5555543 5432 2222 222222334444444333332 4577889999999
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHH-H-HHHHHHHHHH
Q 010416 136 ELTAFLVFAQLMLDYHIGA-ASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILA-P-ILLALLTIVL 212 (511)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~ 212 (511)
++...+.+....+.+.... +......+..+..+++..... ..|.+. . ..+. + +..+......
T Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~--gi~~~~------------~-~~~~~~~~~~i~~~Yt~ 177 (523)
T PRK10484 113 KTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELL--GISYGA------------A-IWLLVWLIGIIGAIYAV 177 (523)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhc--CCcHHH------------H-HHHHHHHHHHHHhhhhh
Confidence 8776666666665555432 222223333333322110000 111110 0 1111 1 1123345555
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce---------------eccCCCCCCC----CChHHHHHHHHHHHHHhh
Q 010416 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---------------DVSNWSPFAP----NGFKEILTGATVVFFAYV 273 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 273 (511)
.-|.|...+...+=..+.++..+++....+... +++.++...+ ..+..++.++......+.
T Consensus 178 ~GGl~aV~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (523)
T PRK10484 178 FGGLKAVAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYW 257 (523)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 568888888776666555554433322221111 1111111111 122223333222212222
Q ss_pred hhhhhhhhhhh---hcCCCCCchHHHHHHHHHHHHHHHHH---HHHHHhcccccCCCCCChHHHHHHHcchhHHHHHHHH
Q 010416 274 GFDAVANSAEE---SKKPQRDLPIGILGSLLICAALYVGV---SLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISF 347 (511)
Q Consensus 274 G~e~~~~~~~E---~k~p~k~~p~ai~~~~~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 347 (511)
+. ..++... .||+ |+..|+..++.....+.+... .+......|.+..+++..+.....+..++++.-++..
T Consensus 258 ~~--~q~~~qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a 334 (523)
T PRK10484 258 CT--NQSIVQRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAA 334 (523)
T ss_pred hC--CHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHH
Confidence 21 2333333 3553 667788877765544443332 2222223333222334455666666667777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010416 348 GAVAGLTTTLLVGLYVQSRLY 368 (511)
Q Consensus 348 ~~~~~~~~~~~~~~~~~sR~l 368 (511)
+.+.+..++..+.+.+.|-.+
T Consensus 335 ~ilAA~mST~~s~l~s~st~~ 355 (523)
T PRK10484 335 VLFGAILSTFNGFLNSASTLF 355 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776666543
No 84
>PRK12488 acetate permease; Provisional
Probab=98.17 E-value=0.016 Score=61.23 Aligned_cols=154 Identities=9% Similarity=-0.071 Sum_probs=92.5
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHHHHHHHHHHHH-HHHHHHHHhhcCccccCcceehhHHHhc
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVL-NALCYAELASRFPAVVGGAYLYAYTAFN 135 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ll~~~~~~~-~~~~~ael~~~~p~~~Gg~y~~~~~~~g 135 (511)
.|++++|.......+..+++.-|.. ++.++.. |...++ +.++..+.++ ..+.+++--++.. .=..++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~-G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g--~~T~~d~l~~Rf~ 141 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMN-GYDGLL-YALGVLAGWPIILFLIAERLRNLG--KYTFADVVSYRLA 141 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChhHHH-HHHHHHHHHHHHHHHHHHHHHHCC--CcchHHHHHHHcC
Confidence 5899999887766666676665554 5555554 443222 2233333332 2344555444443 2466678888888
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 136 -ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 136 -~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
|....+.+....+..+..........+..++.+++ .|.| ..+.+...+...+...-
T Consensus 142 s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------i~~~---------------~~iii~~~i~~~Yt~~G 198 (549)
T PRK12488 142 QGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------ISYL---------------YAVVIVGALMVLYVTFG 198 (549)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHhcc
Confidence 56888888888877777778888888877777543 1222 12222333444455566
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 010416 215 GVGESSVLNSCMTVVKVIIVIVVI 238 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~ 238 (511)
|.|...+.+.+=..+.++..+++.
T Consensus 199 Gm~av~~td~iQ~~im~~~~i~~~ 222 (549)
T PRK12488 199 GMLATTWVQIIKAVLLLSGTSFMA 222 (549)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 899888877776666655544443
No 85
>PLN00150 potassium ion transporter family protein; Provisional
Probab=98.16 E-value=0.00082 Score=70.97 Aligned_cols=284 Identities=13% Similarity=0.076 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc---eeccCCCCCCC---------CChHHHHHHH
Q 010416 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDVSNWSPFAP---------NGFKEILTGA 265 (511)
Q Consensus 198 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~ 265 (511)
..+++++++.+..+.-+|....+ ..++.+.++-++.+..+++.. .++.-+..++| ++..+| ..+
T Consensus 215 v~is~~ILv~LF~iQ~~GT~kVg---~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~-~~L 290 (779)
T PLN00150 215 TIISCVILVILFSLQRFGTHKVS---FLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQGW-ESL 290 (779)
T ss_pred hhhHHHHHHHHHHHHhccchhhh---hhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCceE-EEe
Confidence 56777777777777777755554 455555555555555555443 23333333333 121111 123
Q ss_pred HHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHH-HHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHH
Q 010416 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL-ICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVL 344 (511)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (511)
...+.+.+|.|+.-.=-+-. .+|.+..+-..-+. ...+-|+. .-+....-| ++ ..+|+... ..+++.+-
T Consensus 291 G~V~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~LlL~Y~G-QaA~ll~~p-~~--~~npFf~~----iP~~~~~P 360 (779)
T PLN00150 291 GGIVLCMTGTEAMFADLGHF--TVKSMQIAFTSLVYPCLLLTYLG-QAAYLVKHM-ED--VNDPFYRS----LPKPIYWP 360 (779)
T ss_pred cceeeeecchhhhhccccCC--CccceeeeehhhHHHHHHHHHcc-hHHHHhcCc-cc--ccCcHHHh----CCchhHHH
Confidence 33455678888754433333 23445454442222 22222222 222222212 11 12333332 33455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHhhhcCCCC----CchHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 010416 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKRH----TPVHSQVWVGIVAGILAGLFNVRVLSHILS 419 (511)
Q Consensus 345 ~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~n~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (511)
+.+.+.++.+-+.++.+.++--+..+.-+-|.+|+ +.-+++++.. .|..-.+++.....+...+.+-+.+.+.++
T Consensus 361 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 361 IFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhh
Confidence 55555555555666666666666777777899994 4455565433 555444444333333333337788888887
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchh-hHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHHHHHHHHHH
Q 010416 420 VGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWR-QGVICLIIIACCGFGAGL--FYRINASYILLIVAVVIAVLASA 496 (511)
Q Consensus 420 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 496 (511)
++.....+++.+-....-++..+. +.+. .....+++.+=..++... -+..+.|...++..++..+...|
T Consensus 441 iAV~~vM~iTT~L~~~v~~~~W~~--------~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W 512 (779)
T PLN00150 441 IAVVGVMIITTCLMTLVMIIIWRK--------HILLALLFFTVFAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGTVMYTW 512 (779)
T ss_pred hheehhhHHHHHHHHHHHHHHcCc--------cHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 766554444444332222221111 2222 122222222222333222 24456888888888777777777
Q ss_pred hhhcccc
Q 010416 497 MLCLRHV 503 (511)
Q Consensus 497 ~~~~~~~ 503 (511)
.+-++++
T Consensus 513 ~~G~~~~ 519 (779)
T PLN00150 513 HYGTRKR 519 (779)
T ss_pred HHHHHHH
Confidence 6544333
No 86
>PRK09395 actP acetate permease; Provisional
Probab=98.16 E-value=0.016 Score=61.19 Aligned_cols=154 Identities=10% Similarity=-0.027 Sum_probs=86.4
Q ss_pred cccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHHHHHHHHHHH-HHHHHHHHHhhcCccccCcceehhHHHh
Q 010416 57 LLRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASV-LNALCYAELASRFPAVVGGAYLYAYTAF 134 (511)
Q Consensus 57 l~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ll~~~~~~-~~~~~~ael~~~~p~~~Gg~y~~~~~~~ 134 (511)
-.|++++|......+++.+++.-|.. ++..+.. |...++ +.++..++. ...+.+++--++.. .=..++|.++.|
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~-G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g--~~T~~d~l~~Ry 142 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTS-GYDGLI-YSIGFLVGWPIILFLIAERLRNLG--KYTFADVASYRL 142 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHh-CHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC--CccHHHHHHHHc
Confidence 36888988766666666666655554 4455543 543222 222232322 22333333222221 234556777889
Q ss_pred c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHH
Q 010416 135 N-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (511)
Q Consensus 135 g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (511)
| |....+.+....+..+..........+..++.+++ .|.| ..+.+...+.......
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------i~~~---------------~~ili~~~i~~iYt~~ 199 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------LNYH---------------VAVVLVGVLMMVYVLF 199 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHhh
Confidence 8 56788888887777777777777777776766543 1222 2233333444555556
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 010416 214 WGVGESSVLNSCMTVVKVIIVIVV 237 (511)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~ 237 (511)
-|.|...+.+.+=.++.++..+++
T Consensus 200 GGm~av~~TD~iQ~iim~~g~ii~ 223 (551)
T PRK09395 200 GGMLATTWVQIIKAVLLLSGATFM 223 (551)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 688888887776655555544433
No 87
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.13 E-value=0.019 Score=60.74 Aligned_cols=148 Identities=12% Similarity=0.033 Sum_probs=90.7
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCch-H--HHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHH
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPG-V--TISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~-~--~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~ 133 (511)
.|++++|....-..++.+++.-|.. ++..+.. |.. . .+++.++ ....++.+++.-+++. .-..++|.++.
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~-G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~--~~T~~e~l~~R 104 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFL-GYDGLAYLMGWTGG---YVLLALLLAPYLRKFG--KYTVPDFIGDR 104 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHh-ChHHHHHHHHHHHH---HHHHHHHHHHHHHHCC--CccHHHHHHHH
Confidence 6889999877666666676655554 4444443 432 2 2223222 2234466666666665 46888999999
Q ss_pred hc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHH
Q 010416 134 FN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (511)
Q Consensus 134 ~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (511)
|| |....+.+....+..+...+......+..++.+++ .|.| ..+.+..++......
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------i~~~---------------~~iii~~~i~~iYt~ 161 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------VDFE---------------TGVFIGMAIVFFYAV 161 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHHH
Confidence 98 44677888777777777777777777777777544 1222 112222334455555
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH
Q 010416 213 CWGVGESSVLNSCMTVVKVIIV 234 (511)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~ 234 (511)
.-|.|...+...+=+.+.++..
T Consensus 162 ~GG~~aV~~TD~iQ~iim~ig~ 183 (552)
T TIGR03648 162 LGGMKGVTWTQVAQYIVLIVAY 183 (552)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 5688888777666655554443
No 88
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.11 E-value=0.019 Score=59.98 Aligned_cols=155 Identities=15% Similarity=0.044 Sum_probs=85.8
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHHHHHHHHHH-HHHHHHHH-HHh---hcCccccCcceehhH
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAAS-VLNALCYA-ELA---SRFPAVVGGAYLYAY 131 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ll~~~~~-~~~~~~~a-el~---~~~p~~~Gg~y~~~~ 131 (511)
.|++++|....-..++.+++..+.. |+.++.. |....+.. ++..+. ......++ .+. .+.++ .=..++|.+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~-G~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLS-GISESWIA-IGLTLGAWINWKLVAGRLRVHTEYNNN-ALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC-ceeHHHHHH
Confidence 6889998777666666666655554 5555544 54322222 222222 11111111 111 11223 446778999
Q ss_pred HHhch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHH
Q 010416 132 TAFNE---LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (511)
Q Consensus 132 ~~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (511)
+.||+ ....+.+....+......+......+..++.+++ .|.+ ..+.+...++.
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------i~~~---------------~~iii~~~iv~ 172 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------MSYE---------------TALWAGAAATI 172 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHH
Confidence 99984 4555666666666666666666777777766543 1221 22333344556
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 010416 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVI 238 (511)
Q Consensus 209 ~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~ 238 (511)
.....-|.|...+...+=+.+.++..+++.
T Consensus 173 iYt~~GGl~aV~~TD~iQ~~imi~g~i~~~ 202 (502)
T PRK15419 173 LYTFIGGFLAVSWTDTVQASLMIFALILTP 202 (502)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667889888877776666555444433
No 89
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=98.09 E-value=0.0024 Score=65.36 Aligned_cols=282 Identities=11% Similarity=0.058 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce--eccCCCCCC---------CCChHHHHHHHH
Q 010416 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFA---------PNGFKEILTGAT 266 (511)
Q Consensus 198 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~ 266 (511)
..+++++++....+.-+|....++ .++.+.++-++.+...++... +++-+..++ .++..+ +..+.
T Consensus 133 v~it~~ILv~LF~iQ~~GT~~ig~---~FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~-~~~LG 208 (534)
T PF02705_consen 133 VPITIAILVGLFAIQRFGTAKIGK---LFGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIG-FFVLG 208 (534)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHH---HHhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCch-hhhcc
Confidence 567777777777777777655554 566666665555555555432 121111122 223322 22344
Q ss_pred HHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHH-HHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHHH
Q 010416 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL-ICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (511)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (511)
..+.+.+|.|+--.--+-. .+|.+.++-..-+. ...+.|+. .-+....-| + ...+|+.... .+|..+-+
T Consensus 209 ~V~L~~TGaEALyADmGHf--g~~~Ir~aw~~~V~PaL~LnY~G-QgA~ll~~p-~--~~~npFf~~~----P~~~~~p~ 278 (534)
T PF02705_consen 209 AVFLCVTGAEALYADMGHF--GRKPIRIAWFFLVFPALLLNYFG-QGALLLSHP-E--AVSNPFFLLI----PEWLLWPM 278 (534)
T ss_pred hHHHHHhhHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHcc-HHHHHHcCc-c--hhhhHHHHHh----HHHHHHHH
Confidence 5667778999866433322 23555555444222 22222222 222222211 1 1133444333 34555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHhhhcCCC-C---CchHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 010416 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKR-H---TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (511)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~n~~~-~---~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (511)
.+.+.++.+-+.++...++--+..+.-+-|.+|+ ...++|++. | .|..-.++......+...+.+-+.+.+.+++
T Consensus 279 ~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGi 358 (534)
T PF02705_consen 279 VILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGI 358 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHH
Confidence 6666666666667777777777778888899994 455556543 2 5665555554444444444488899999988
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHHHHHHHHHHhh
Q 010416 421 GTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGL--FYRINASYILLIVAVVIAVLASAML 498 (511)
Q Consensus 421 ~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (511)
+......++.+.....-+++.+.+ ..+.......+..+=..+.... -+..+.|...++..++......|+.
T Consensus 359 AVt~tM~iTT~L~~~v~~~~w~~~-------~~~~~~~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~tW~~ 431 (534)
T PF02705_consen 359 AVTGTMLITTILLFLVMRRVWKWP-------LWLALLFFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTIMYTWRR 431 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 887777777765544433332221 1122222222222222233222 3455688888777777777776664
Q ss_pred hc
Q 010416 499 CL 500 (511)
Q Consensus 499 ~~ 500 (511)
-+
T Consensus 432 G~ 433 (534)
T PF02705_consen 432 GR 433 (534)
T ss_pred HH
Confidence 33
No 90
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.99 E-value=0.00016 Score=74.30 Aligned_cols=242 Identities=13% Similarity=0.087 Sum_probs=117.3
Q ss_pred cccccChhHHHHHHhcccccchhhhchhhhhhhc-C-chHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHh
Q 010416 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDA-G-PGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (511)
Q Consensus 57 l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~-G-~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~ 134 (511)
.+|+.++++.+.+=++..+....+..-......+ + +.++++.+++.++........+.++.++. =......+..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~G---l~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTG---LPTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC------HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccC---CCchhcchhcc
Confidence 4677788888877666554443333333332222 1 23677777777766555555555555442 24556666689
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
|.+.+.+.+....+..+...+.+....++.+..+.+.. ++ . +.+... ..........+..++..++.......
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~--~g-~-~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII--FG-S-FLWIGN---AIIGIALPLWVCFFIFWLIQTLFAIY 154 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C-------HH--------------HHHHHHHHHHHHHHCT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cC-c-chhhhh---hhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 99888888888888888888888888888888866511 00 0 011000 00000001122333444556666778
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCC-C-CCCCCChHHHHHHHHHHHHHh-hhhhhhhhhhhhhcCCCCC
Q 010416 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW-S-PFAPNGFKEILTGATVVFFAY-VGFDAVANSAEESKKPQRD 291 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~p~k~ 291 (511)
|.+...+++.+...+..+..+.+........+.... + +..+.....+..++....-.. ...-..+.++...|++ |+
T Consensus 155 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~-~~ 233 (440)
T PF02133_consen 155 GMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSD-TS 233 (440)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--H-HH
T ss_pred CHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCC-CC
Confidence 888888888877766555544444443333222111 1 111111112333333322221 2223345677777764 33
Q ss_pred chHHHHHHHHHHHHHHHH
Q 010416 292 LPIGILGSLLICAALYVG 309 (511)
Q Consensus 292 ~p~ai~~~~~~~~~~y~~ 309 (511)
..+...++.....+...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (440)
T PF02133_consen 234 AWWGFWLGFPGGFIPFVL 251 (440)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeehhhhHHHHHHH
Confidence 445555555444444333
No 91
>PLN00149 potassium transporter; Provisional
Probab=97.96 E-value=0.011 Score=62.77 Aligned_cols=287 Identities=10% Similarity=0.010 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc---ceeccCCCCCCCC---------ChHHHHHHH
Q 010416 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EVDVSNWSPFAPN---------GFKEILTGA 265 (511)
Q Consensus 198 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~ 265 (511)
..+++++++.+..+.-+|....+ ..++.+.++-++.+..+++. +.++.-+..++|. +..+ +..+
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg---~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g-~~~L 274 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVG---FLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGG-WMSL 274 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCce-eEee
Confidence 45777777777777777755554 45555555555555555544 3334433333332 1111 1123
Q ss_pred HHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHH-HHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHH
Q 010416 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL-ICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVL 344 (511)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (511)
.-.+.+.+|.|+.-.=-+-. .+|.+..+-..-+. ...+.|+. .-+....-|...-+-.+|+... ..+++.+-
T Consensus 275 GgV~L~iTG~EALyADlGHF--~~~~Ir~aw~~~V~P~L~L~Y~G-QaA~l~~~p~~~~~~~~pFy~~----iP~~~~~P 347 (779)
T PLN00149 275 GGILLCITGSEAMFADLGHF--SQLSIKIAFTSLVYPSLILAYMG-QAAYLSKHHVIESDYRIGFYVS----VPEKLRWP 347 (779)
T ss_pred cchhhcccchhhhhhcccCC--CccceeeeehhhHHHHHHHHhhh-HHHHHhcCcchhccccCcHHHh----CCchhHHH
Confidence 34556778999754433333 23555554443222 22222332 2333322221101112233332 33445455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHhhhcCCCC----CchHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 010416 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKRH----TPVHSQVWVGIVAGILAGLFNVRVLSHILS 419 (511)
Q Consensus 345 ~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~n~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (511)
+.+.+.++.+-+.++.+.++--++.+.-+-|.+|+ +.-+++++.. .|..-.+++.....+...+-+.+.+.+.++
T Consensus 348 ~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 427 (779)
T PLN00149 348 VLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASG 427 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhh
Confidence 55555555555566666666666777777799994 4445555433 555544444333333333337788888887
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchh-hHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHHHHHHHHHH
Q 010416 420 VGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWR-QGVICLIIIACCGFGAGL--FYRINASYILLIVAVVIAVLASA 496 (511)
Q Consensus 420 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 496 (511)
++......++.+-....-+...+. +.+. .....+++.+=..++... -+..+.|...++..++..+...|
T Consensus 428 iAV~~vM~iTT~L~~lv~~~~W~~--------~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W 499 (779)
T PLN00149 428 LAVITVMLVTTCLMSLVIVLCWHK--------SVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALSFIFLLVMYVW 499 (779)
T ss_pred hhhehHHHHHHHHHHHHHHHHcCc--------cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 766554444444332222221111 2221 122222222222333222 24456888888888877777777
Q ss_pred hhhcccc
Q 010416 497 MLCLRHV 503 (511)
Q Consensus 497 ~~~~~~~ 503 (511)
.+-++++
T Consensus 500 ~~G~~~~ 506 (779)
T PLN00149 500 HYGTLKR 506 (779)
T ss_pred HHHHHHH
Confidence 6544333
No 92
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=97.78 E-value=0.011 Score=61.30 Aligned_cols=279 Identities=12% Similarity=0.058 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce--eccCCCCCCC---------CChHHHHHHHH
Q 010416 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAP---------NGFKEILTGAT 266 (511)
Q Consensus 198 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~ 266 (511)
..+++++++....+.-+|.... ...++.+.++-++.+.+.++... +++-+...+| ++..+ +..+.
T Consensus 144 vpit~~ILv~LF~iQ~~GT~~v---G~~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~g-f~~LG 219 (622)
T PRK10745 144 VPLSIIVLTLLFMIQKHGTGMV---GKLFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVS-FFALG 219 (622)
T ss_pred HHHHHHHHHHHHHHhccccHHH---hhhhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCce-EEEec
Confidence 5677777777777777775544 45666666665555555555432 2222222222 12111 11233
Q ss_pred HHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHH-HHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHHH
Q 010416 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL-ICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (511)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (511)
..+.+.+|.|+--.=-+-. .+|.+.++-..-+. ...+.|+. .-+....-| + ...+|+... ..+|..+-+
T Consensus 220 ~V~L~vTGaEALYADmGHF--G~~~Ir~aW~~~v~P~L~LnY~G-QgA~ll~~p-~--~~~NpFf~~----~P~~~~~p~ 289 (622)
T PRK10745 220 AVVLAITGVEALYADMGHF--GKFPIRLAWFTVVLPSLVLNYFG-QGALLLKNP-E--AIKNPFFLL----APDWALIPL 289 (622)
T ss_pred ceeeeccchHHHhhccCCC--CccceeeeehhhHHHHHHHHhcc-hHHHHhcCc-h--hhcCcHHHh----CChhHHHHH
Confidence 3455668888754433333 23555555443332 22333333 222222111 1 113344433 334555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHhhhcCCCC----CchHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 010416 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKRH----TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (511)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~n~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (511)
.+.+.++.+-+.++.+.++--+..+.-+-|++|+ ...++|++.. .|..-.++......+...+.+.+.+.+.+++
T Consensus 290 viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 290 LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhh
Confidence 6666666666667777777677777778899994 4455555422 4554444443333333333377888888887
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchhhH-HHHHHHHHHHHHHHhh--hhcccchHHHHHHHHHHHHHHHHh
Q 010416 421 GTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQG-VICLIIIACCGFGAGL--FYRINASYILLIVAVVIAVLASAM 497 (511)
Q Consensus 421 ~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 497 (511)
+......++.+-.....+++.+. +.+... ....+..+=..+.... -+..+.|...++..++......|+
T Consensus 370 AVt~tM~iTT~L~~~v~~~~w~~--------~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~iM~tW~ 441 (622)
T PRK10745 370 AVTGTMVLTSILSTTVARKNWHW--------NKYFVALILIAFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFIVMTTWK 441 (622)
T ss_pred hheeHhHHHHHHHHHHHHHHcCc--------cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 77666656555444443332211 222211 1122222222222222 244558888777777777777666
Q ss_pred h
Q 010416 498 L 498 (511)
Q Consensus 498 ~ 498 (511)
.
T Consensus 442 ~ 442 (622)
T PRK10745 442 S 442 (622)
T ss_pred H
Confidence 3
No 93
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=97.73 E-value=0.0003 Score=66.20 Aligned_cols=241 Identities=12% Similarity=0.079 Sum_probs=149.5
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcce-------e
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAY-------L 128 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y-------~ 128 (511)
+-+.+++-|+..+=+...+-|.=+..+| .+...||..++.+.+..+..+..++-.+.| +.|....-|.. .
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP-~AvlhGGyw~i~amvg~A~vCcyTGk~Li~--CLYE~~~dGevVrvRdsYv 188 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLP-IAVLHGGYWSIGAMVGVAYVCCYTGKLLIE--CLYENGEDGEVVRVRDSYV 188 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccc-eeeeEcchhHHHHHHhhhhhhhccchhhhh--hhccCCCCCcEEEeehhHH
Confidence 3356899999888776666443222233 455667877777777777666655554443 22322022333 2
Q ss_pred hhHHH-hchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHH
Q 010416 129 YAYTA-FNELTA-FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206 (511)
Q Consensus 129 ~~~~~-~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (511)
-+.+. ++|.+| ..+....++....++..+....++.+.+ -+|........| ..++.+.++
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~---~fP~~svd~~sW---------------m~i~~a~LL 250 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQS---CFPGLSVDKASW---------------MMITSASLL 250 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhc---cCCCCCccccch---------------hhhhhHHHh
Confidence 22222 666665 6677778888888888999999998888 666555555566 345444444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCCC-CCCChHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 010416 207 LLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF-APNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (511)
Q Consensus 207 ~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (511)
-+.. +...|..+++..+.+...+++-++++...+.....-.|+.. ++.+...+-..+....|+|+..--.+++-+.+
T Consensus 251 pc~F--Lk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM 328 (524)
T KOG4303|consen 251 PCSF--LKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM 328 (524)
T ss_pred hhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc
Confidence 4443 34567788888777777777776666655554433333310 01111111222344568888888889999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010416 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY 320 (511)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~ 320 (511)
|||.+ +-.-+-|+-+...++=.+..++.......
T Consensus 329 ~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~ 362 (524)
T KOG4303|consen 329 KNPSQ-FNVMLKWSHIAAAVFKVVFGMLGFLTFGE 362 (524)
T ss_pred CChhH-heeeeehHHHHHHHHHHHHHHheeeeech
Confidence 99965 77778888888888877776666655443
No 94
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.70 E-value=0.083 Score=54.27 Aligned_cols=355 Identities=15% Similarity=0.073 Sum_probs=159.6
Q ss_pred ccccChhHHHHHHhcccccchhhhchh-h-hh--h------hcCc-------------h-HHHHHHHHHHHHHHHHHHHH
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVVTG-T-VA--R------DAGP-------------G-VTISFLLAGAASVLNALCYA 113 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~~~-~-~~--~------~~G~-------------~-~~~~~ll~~~~~~~~~~~~a 113 (511)
|.++|.++-.++.+++-+|.|+..-.. + .. . ..+. + .+.+|.+-++.++..++.+.
T Consensus 72 kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y 151 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFY 151 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeee
Confidence 567788888888888888888755321 1 11 0 0110 0 24455555556666666555
Q ss_pred HHhhcCccccCcceehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccC
Q 010416 114 ELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGG 193 (511)
Q Consensus 114 el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (511)
.-.+.+.- +...+-...+...+..|.+.=....++.+.+.+...-.....+..-++ ..++.....
T Consensus 152 ~k~~~~~~-ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~--~~~Gi~~~~------------ 216 (485)
T PF02028_consen 152 NKGKPLRI-SSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLS--SLFGIPNTF------------ 216 (485)
T ss_dssp TS---SSG-GGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCTSSSTH------------
T ss_pred ecCCCCch-hhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHcCCCCch------------
Confidence 53333322 333333333333344565555555555555555444444444444333 111111111
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHhhhccce--------------e---cc-CCCCCC
Q 010416 194 TLSINILAPILLALLTIVLCWGVG-ESSVLNSCMTVVKVIIVIVVIFAGAFEV--------------D---VS-NWSPFA 254 (511)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------------~---~~-~~~~~~ 254 (511)
.....+..++.++.+.-...|++ ..+++.+.-..+.++.++.+.+.+-... + .. +..+..
T Consensus 217 -~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~ 295 (485)
T PF02028_consen 217 -GLQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFG 295 (485)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 12244445555555566666663 3555555555544444444444331100 0 00 111222
Q ss_pred CCC-hHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-cccccC-----CC---
Q 010416 255 PNG-FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG-MVPYKF-----LD--- 324 (511)
Q Consensus 255 ~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~-~~~~~~-----~~--- 324 (511)
..+ |......+..+-|.-.+--....++.=.| .|+++.-+...++...+...+---+... .+..+. ..
T Consensus 296 ~~~~w~~~WTvFYwaWWiawaPfvG~FiArISk--GRTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~ 373 (485)
T PF02028_consen 296 NSGQWPQDWTVFYWAWWIAWAPFVGLFIARISK--GRTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAAN 373 (485)
T ss_dssp TTTHHHHHTHHHHHHHHHHTHHHHHHHHHHCTT--TSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHH
T ss_pred CcccccCCCHHHHHHHHHHHHHHHHHHHhhhcC--CcCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHh
Confidence 333 43333333333332222222333333333 3888666666555555444332222221 111111 10
Q ss_pred CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHH--HHHH
Q 010416 325 EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWV--GIVA 402 (511)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~--~~~~ 402 (511)
+..+-..+++....-++..++.+..++.++....+..-+++..+..++.+| +.++ ..+.+..|.. .+++
T Consensus 374 ~~g~~~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep--~~~~ri~W~~~~~~~a 444 (485)
T PF02028_consen 374 EQGPEAALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEP--PRWLRIFWGLIIGALA 444 (485)
T ss_dssp HH-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCC--chHHHHHHHHHHHHHH
Confidence 111111222222222334455555555666666677788888888888776 1111 2333333333 2333
Q ss_pred HHHHhhhc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010416 403 GILAGLFN---VRVLSHILSVGTLTGYSVVSACVIALRWK 439 (511)
Q Consensus 403 ~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 439 (511)
..+..... .+.+..+.++...+...+.+.+.++.-||
T Consensus 445 ~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 445 IVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333343 45555566677777777777777665543
No 95
>PLN00148 potassium transporter; Provisional
Probab=97.63 E-value=0.0085 Score=63.62 Aligned_cols=284 Identities=9% Similarity=0.021 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc---ceeccCCCCCCC---------CChHHHHHHH
Q 010416 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EVDVSNWSPFAP---------NGFKEILTGA 265 (511)
Q Consensus 198 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~ 265 (511)
..+++++++.+..+.-+|....+ ..++.+.++-++.+..+++. +.++.-+..++| ++..+| ..+
T Consensus 198 v~is~~ILv~LF~vQ~~GT~kVg---~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~-~~L 273 (785)
T PLN00148 198 VLLACVILVGLFALQHCGTHRVA---FMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDGW-ISL 273 (785)
T ss_pred hhHHHHHHHHHHHHhccccHHHH---hhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCceE-Eee
Confidence 56777777777777777765555 45555555555555555544 333433333333 222111 123
Q ss_pred HHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHH-HHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHH
Q 010416 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL-ICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVL 344 (511)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (511)
.-.+.+.+|.|+.-.=-+-. .+|.+.++-..-+. ...+-|+. .-+....-| ++ -.+|+... ..++..+-
T Consensus 274 GgV~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~L~L~Y~G-QaA~ll~~p-~~--~~npFf~~----iP~~~~~P 343 (785)
T PLN00148 274 GGILLSITGTEAMFADLGHF--TAASIRLAFATVIYPCLVVQYMG-QAAFLSKNI-PS--IPNSFYDS----IPDPVFWP 343 (785)
T ss_pred cchheeccchhhhhhhccCC--CccceEEeeeehHHHHHHHHHcc-hHHHHhcCc-cc--ccCcHHHh----CCchhHHH
Confidence 34456678988754433333 23445444432222 22222322 222222222 11 12333332 33444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHhhhcCCCC----CchHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 010416 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKRH----TPVHSQVWVGIVAGILAGLFNVRVLSHILS 419 (511)
Q Consensus 345 ~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~n~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (511)
+.+.+.++.+-+.++.+.++--+..+.-+-|.+|+ +.-+++++.. .|..-.+++.....+...+.+-+.+.+.++
T Consensus 344 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYG 423 (785)
T PLN00148 344 VFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYG 423 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhh
Confidence 55555555555566666666666777777799994 4556665532 565554444433333333447778888887
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchh-hHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHHHHHHHHHH
Q 010416 420 VGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWR-QGVICLIIIACCGFGAGL--FYRINASYILLIVAVVIAVLASA 496 (511)
Q Consensus 420 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 496 (511)
++.....+++.+-....-+...+. +.+. ..+..+++.+=..++... -+..+.|...++..++..+...|
T Consensus 424 iAV~~vM~iTT~L~~lV~~~~W~~--------~~~~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W 495 (785)
T PLN00148 424 LACMTVMFITTFLMALVIIFVWQK--------SIILAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAIFMSIMYIW 495 (785)
T ss_pred hheeeHHHHHHHHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 666544444433222211111111 2222 122222222222333222 24456888888888877777777
Q ss_pred hhhcccc
Q 010416 497 MLCLRHV 503 (511)
Q Consensus 497 ~~~~~~~ 503 (511)
.+-++++
T Consensus 496 ~~G~~~~ 502 (785)
T PLN00148 496 HYGTRKK 502 (785)
T ss_pred HHHHHHH
Confidence 6544333
No 96
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=97.58 E-value=0.0074 Score=63.54 Aligned_cols=280 Identities=10% Similarity=0.075 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce---eccCCCCCCC---------CChHHHHHHH
Q 010416 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSPFAP---------NGFKEILTGA 265 (511)
Q Consensus 198 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~~~~~ 265 (511)
..+++++++....+.-+|....+ ..++.+.++-++.+.+.++... ++.-+..++| ++..+ +..+
T Consensus 169 v~it~~ILv~LF~iQ~~GT~kvg---~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~L 244 (688)
T TIGR00794 169 VPISCIILVLLFLIQRFGTAKVG---FTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVSL 244 (688)
T ss_pred hhHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eeec
Confidence 56777777777777777755544 5566666665555555555432 2222222222 22212 1233
Q ss_pred HHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHH-HHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHH
Q 010416 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGS-LLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVL 344 (511)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (511)
...+.+.+|.|+--.=-+-.. +|.+..+-..- .-...+.|+. .-+....-| ++ ..+|+... ..+|..+-
T Consensus 245 G~V~L~iTGaEALyADmGHFg--~~~Ir~aw~~~V~P~L~LnY~G-QgA~ll~~p-~~--~~NpFf~~----~P~~~~~p 314 (688)
T TIGR00794 245 GGVVLSITGVEAMFADLGHFG--KLPIQLAWFTFVYPSLILCYIG-QAAYLSKHP-EA--IKNPFFLS----IPDWALWP 314 (688)
T ss_pred cchhheeccHhhhhcccCCCC--cccceeehHHHHHHHHHHHHcc-hHHHHhcCc-ch--hcCcHHHh----CchHHHHH
Confidence 445567789997544333332 34454444422 2222222332 222222111 11 12344333 34566566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHhhhcCCCC----CchHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 010416 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKRH----TPVHSQVWVGIVAGILAGLFNVRVLSHILS 419 (511)
Q Consensus 345 ~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~n~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (511)
+.+.+.++.+-+.++.+.++--+..+.-+-|++|+ ...++|++.. .|..-.+++.....+...+.+-+.+.+.++
T Consensus 315 ~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYG 394 (688)
T TIGR00794 315 LFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYG 394 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhh
Confidence 66666666666667777777777777778899994 4555555422 555554444444333333447788888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchh-hHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHHHHHHHHHH
Q 010416 420 VGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWR-QGVICLIIIACCGFGAGL--FYRINASYILLIVAVVIAVLASA 496 (511)
Q Consensus 420 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 496 (511)
++......++.+-....-++..+. +.+. .....++..+=..++... -+..+.|...++..++......|
T Consensus 395 iaVt~tM~iTT~L~~~v~~~~w~~--------~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~~W 466 (688)
T TIGR00794 395 IAVTGTFLVTTCLMTVVMTIVWKW--------NIYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVMTTW 466 (688)
T ss_pred hhhhhhhHHHHHHHHHHHHHHcCc--------cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 777666666555443332222111 2221 112222222222222222 24556888888877777777777
Q ss_pred hhh
Q 010416 497 MLC 499 (511)
Q Consensus 497 ~~~ 499 (511)
..-
T Consensus 467 ~~G 469 (688)
T TIGR00794 467 RYG 469 (688)
T ss_pred HHH
Confidence 643
No 97
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.53 E-value=0.024 Score=56.37 Aligned_cols=307 Identities=13% Similarity=0.065 Sum_probs=147.2
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCc--hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehh
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP--GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~--~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~ 130 (511)
..+.-+|..++|+.+.+=.+..+..+-+...+..++.|-. ..|+..+++-++.......-+. .|..|+..
T Consensus 48 Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns~--------~G~~yhIs 119 (572)
T KOG2466|consen 48 PVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNSR--------PGSDYHIS 119 (572)
T ss_pred cCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHccC--------CCcccccc
Confidence 3455688999999998776666666666666666666542 3666666666554433332222 35555432
Q ss_pred -----HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccCCCccccCCCcccccCcchhhHHH-HH
Q 010416 131 -----YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILA-PI 203 (511)
Q Consensus 131 -----~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 203 (511)
+..||-..+...-....+.-+..-..++...++.++.++. +++. ....|.++... +..+..+++ ++
T Consensus 120 Fpv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~-~~hipntl~~~------~~tt~e~i~FfI 192 (572)
T KOG2466|consen 120 FPVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKS-FSHIPNTLGKP------GTTTYEFIGFFI 192 (572)
T ss_pred eeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhh-hhcCccccCCC------CCchHHHHHHHH
Confidence 2344433333222233333333444555566666666544 3332 22344444311 111223344 44
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceec--c-CCCCCCCCC---hHHHHHHHHHHHHHh-hhhh
Q 010416 204 LLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--S-NWSPFAPNG---FKEILTGATVVFFAY-VGFD 276 (511)
Q Consensus 204 ~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~~~~~~~~~~~~-~G~e 276 (511)
+-++.....++++....++...-.+......+.+.+....+.+. + +..+....+ ...++.++....-.| ++.-
T Consensus 193 Fwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~ 272 (572)
T KOG2466|consen 193 FWVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIV 272 (572)
T ss_pred HHHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhc
Confidence 44444555557777888877777777777777777776665443 1 111111221 113443333322222 3444
Q ss_pred hhhhhhhhhcCCCCCchHHHHHHHHHHHHH----HHHHHHHHHhcccccCCCCCChHHHHHHH-------cchhHHHHHH
Q 010416 277 AVANSAEESKKPQRDLPIGILGSLLICAAL----YVGVSLVLTGMVPYKFLDEDAPLSDAFAS-------RGLKYVSVLI 345 (511)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~----y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 345 (511)
..+.++.=.|+|.. .+.+-+.++.+...+ .++..-+.....+.+-. ...+++.+ .|...+..++
T Consensus 273 N~pDFsRF~ksp~a-~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W----~Pldil~~~l~~~y~~G~RAgvFfi 347 (572)
T KOG2466|consen 273 NAPDFSRFAKSPNA-IWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYW----SPLDILNQWLDTNYSAGARAGVFFI 347 (572)
T ss_pred cCchhHhhcCCCCc-cchhhhhhhhhhhhhhhheeeEehhhhhhhhccccc----CHHHHHHHHhccccccccchhhhHH
Confidence 45556666666633 222222222211111 11111111111111111 22334332 3556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhh
Q 010416 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAK 383 (511)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~ 383 (511)
.+...++.++...+. .-+-.++.-.+.+||++.-
T Consensus 348 ~~~f~laql~~NISa----n~vaagnDl~~L~PkyinI 381 (572)
T KOG2466|consen 348 GFGFALAQLGTNISA----NSVAAGNDLSALLPKYINI 381 (572)
T ss_pred HHHHHHHHHhcchhc----cccccchhhHhhCcceEEe
Confidence 777777776654332 1122223334678887755
No 98
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.58 Score=47.81 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce--eccCCCCCCCCChHHHHH--------HHHH
Q 010416 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAPNGFKEILT--------GATV 267 (511)
Q Consensus 198 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~ 267 (511)
..+++++++....+.-.|....+ ..++.+.++-.+.+...++... +++-+...+|.....++. .+..
T Consensus 149 vpitl~IL~~LF~iQ~~GT~~Vg---~~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~vLGa 225 (627)
T COG3158 149 VPITLIILVLLFLIQRFGTGRVG---KLFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLGA 225 (627)
T ss_pred HHHHHHHHHHHHHHhcccchhhh---hhhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEEEeee
Confidence 56777777777777777765555 4666666666666666666532 333233333321111111 1223
Q ss_pred HHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCC-CCCChHHHHHHHcchhHHHHHHH
Q 010416 268 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFL-DEDAPLSDAFASRGLKYVSVLIS 346 (511)
Q Consensus 268 ~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 346 (511)
.+.+.+|-|+--.=-+-.. +|.+.+|=..-..= .++.++.-.+..--.+. ...+|+... ...|..+-+.
T Consensus 226 VfLavTGaEALYADmGHfG--r~pI~~AWf~vv~P----~L~LNY~GQGA~vL~~p~a~~npFF~~----~P~~aliP~v 295 (627)
T COG3158 226 VFLAVTGAEALYADMGHFG--RKPIRVAWFFVVLP----CLLLNYFGQGALLLSNPEAIGNPFFLL----APDWALIPLV 295 (627)
T ss_pred eeeeeccHHHHHhhccccC--CccHHHHHHHHHHH----HHHHHHccccceeccCcccccCcHHHh----ChhhHHHHHH
Confidence 3456678887544333332 34454443322220 11112221111111111 112343332 2334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHhhhcCC-CC---CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 010416 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK-RH---TPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421 (511)
Q Consensus 347 i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~~~n~~-~~---~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (511)
+.+..++.-+.++.+.++--+..+.-|-|++|+ ...+++++ .| .|..-.++...+..++.-+.+-+.+.+.++++
T Consensus 296 iLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiA 375 (627)
T COG3158 296 ILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIA 375 (627)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChh
Confidence 455555555555555555555666677899993 34444443 22 56655555544444443444677788777766
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 010416 422 TLTGYSVVSACVIALRWKD 440 (511)
Q Consensus 422 ~~~~~~~~~~~~l~~r~~~ 440 (511)
.-....++.+-....-+++
T Consensus 376 VTgtM~iTt~L~~~~~~~~ 394 (627)
T COG3158 376 VTGTMVITTILLTVVMRKK 394 (627)
T ss_pred eeehhHHHHHHHHHHHHHh
Confidence 6555555555444443333
No 99
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.55 E-value=1 Score=45.26 Aligned_cols=184 Identities=9% Similarity=0.056 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhcCccccCcceehh-HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcccc
Q 010416 106 VLNALCYAELASRFPAVVGGAYLYA-YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIG 184 (511)
Q Consensus 106 ~~~~~~~ael~~~~p~~~Gg~y~~~-~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (511)
....+..+|--+++-+ =...++. .|.-.+..-++.++..++....+......+.+..+..+++ .|.+
T Consensus 88 ~i~~fL~A~~LRk~Gk--yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------v~~~-- 155 (529)
T COG4147 88 PILLFLIAEYLRKLGK--YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------VPYH-- 155 (529)
T ss_pred HHHHHHHHHHHHhcCC--cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------CCce--
Confidence 3456677787777754 2223333 4445567778888888888788888888888888887654 2222
Q ss_pred CCCcccccCcchhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceecc---------C------
Q 010416 185 HGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS---------N------ 249 (511)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~------ 249 (511)
..+.++..+......+-|.|...|.|.+=.++.+...+++.+....+.+++ +
T Consensus 156 -------------vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~ 222 (529)
T COG4147 156 -------------VGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDD 222 (529)
T ss_pred -------------eehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccC
Confidence 334556666777777889999999998877777776666666554432211 0
Q ss_pred CCCCCCCCh--HHHHHHHHHHHHHhhhhhhhhhhhhhh-cCC-CCCchHHHHHHHHHHHHHHHHHHHHH
Q 010416 250 WSPFAPNGF--KEILTGATVVFFAYVGFDAVANSAEES-KKP-QRDLPIGILGSLLICAALYVGVSLVL 314 (511)
Q Consensus 250 ~~~~~~~~~--~~~~~~~~~~~~~~~G~e~~~~~~~E~-k~p-~k~~p~ai~~~~~~~~~~y~~~~~~~ 314 (511)
.....++|. ...+..+...+--..|.-.-+|+--+. --| -|+-+|+..++.....++|+...+.-
T Consensus 223 ~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig 291 (529)
T COG4147 223 GSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIG 291 (529)
T ss_pred cccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112221 123333444444456776666664332 112 15566888999999999998755543
No 100
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=96.10 E-value=1.8 Score=43.48 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=32.1
Q ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (511)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 371 (511)
..+..+...|++...++.++++.+-.++..+..+++.-.+.+.
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444455667788889999999998888888888776666654
No 101
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.85 E-value=2 Score=41.84 Aligned_cols=278 Identities=14% Similarity=0.114 Sum_probs=142.7
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHHHHHHHHHHH--------HHHHHHHHHhhcCccccCccee
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASV--------LNALCYAELASRFPAVVGGAYL 128 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ll~~~~~~--------~~~~~~ael~~~~p~~~Gg~y~ 128 (511)
.|+++..-+.+...++=+++..|.. |+.++..|- +|++-+.+.. ..+--++.+++++. +=...+
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl-----gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~n--AltI~D 110 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL-----GWVLLAMIQVPTVWLALGVLGKKFAILAREYN--ALTIND 110 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhC--CeeHHH
Confidence 4677766544444333355554443 555554432 2333222222 22333445555553 233444
Q ss_pred hhHHH-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHH
Q 010416 129 YAYTA-FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (511)
Q Consensus 129 ~~~~~-~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (511)
+.++. -++...++.+...++.......+.-.+.+..+....++ + +. ....+--..+
T Consensus 111 ~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi--------d-Y~--------------tgL~ifa~~V 167 (473)
T COG4145 111 LLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI--------D-YT--------------TGLLIFAVSV 167 (473)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC--------C-ch--------------hhHHHHHHHH
Confidence 55444 46788899999999998888888888899888876541 1 10 1111222233
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccce-------------eccCCCCCCCCC--hHHHHHH-HHHHHHH
Q 010416 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNG--FKEILTG-ATVVFFA 271 (511)
Q Consensus 208 ~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~-~~~~~~~ 271 (511)
.....+-|-|.....-.+=+.+.++..+++....+... |++-..|...+. -..++.+ ....++.
T Consensus 168 ~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~g 247 (473)
T COG4145 168 AIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFG 247 (473)
T ss_pred HHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHH
Confidence 33444556777666555555555554444444332211 222222222222 0122222 2233344
Q ss_pred hhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-cccccCCC-CCChHHHHHHHcchhHHHHHHHHHH
Q 010416 272 YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG-MVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGA 349 (511)
Q Consensus 272 ~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (511)
..|.-....=.-..|| +|.+.+++.++..+..++.+.+-.+-.. -.-.+|+. .+..+..+.-+...+...-++..+.
T Consensus 248 vlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~agifl~ap 326 (473)
T COG4145 248 VLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAGIFLAAP 326 (473)
T ss_pred HhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHHHHHHHH
Confidence 4444333333334577 5778899999888887776655443221 11112222 3444455555666666666666667
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010416 350 VAGLTTTLLVGLYVQSR 366 (511)
Q Consensus 350 ~~~~~~~~~~~~~~~sR 366 (511)
+.+..++.++.+.-+|-
T Consensus 327 maAiMSTIds~L~~~ss 343 (473)
T COG4145 327 MAAIMSTINSQLLQSSS 343 (473)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777766554443
No 102
>PRK09928 choline transport protein BetT; Provisional
Probab=95.83 E-value=3.3 Score=44.25 Aligned_cols=93 Identities=6% Similarity=-0.199 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHH---HHH
Q 010416 341 VSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVL---SHI 417 (511)
Q Consensus 341 ~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l---~~~ 417 (511)
+..+..+..++.++....+..-+++-.+-.++.+|.-|+- +.+ +...-.+++++. +++..+......+.+ ..+
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~--~pp-~~~RifW~v~ig-~la~~LL~~GGL~aLQt~sii 482 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS--DAP-NWLRVFWSVAIG-LLTLGMLMTNGISALQNTTVI 482 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC--CCC-cceeeHHHHHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence 3344444444444555566667777788888776643311 111 123334454433 333344444444444 444
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010416 418 LSVGTLTGYSVVSACVIALR 437 (511)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~r 437 (511)
.++...+..++.+.+.++.-
T Consensus 483 ~alPf~~I~ll~~~sl~k~l 502 (679)
T PRK09928 483 MGLPFSFVIFFVMAGLYKSL 502 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666766643
No 103
>PRK09950 putative transporter; Provisional
Probab=95.78 E-value=2.9 Score=43.28 Aligned_cols=92 Identities=8% Similarity=-0.068 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcC-CCCCchHHHHHHHHHHHHHHhhhc-HHHHH---
Q 010416 341 VSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHP-KRHTPVHSQVWVGIVAGILAGLFN-VRVLS--- 415 (511)
Q Consensus 341 ~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~-~~~~P~~a~~~~~~~~~~~~~~~~-~~~l~--- 415 (511)
+..++.+..++.++....+..-+++-.+..++.+|.-++ .|+ +...=.+++.+. +++..+..... .+.+-
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~----~~P~~~~ri~W~i~~g-~ia~~Ll~~gG~l~~lQ~~~ 474 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREG----DDPDRGLRLFWCVVIT-LIPLSILFTGASLDTMKTTV 474 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCC----CCCCcchhHHHHHHHH-HHHHHHHHhCCcHHHHHHHH
Confidence 444555555555555666677777888888877654221 111 112223343333 33333333333 55444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010416 416 HILSVGTLTGYSVVSACVIALR 437 (511)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~r 437 (511)
.+.++...+...+.+.+.++.-
T Consensus 475 ii~alP~~~i~~l~~~s~~k~l 496 (506)
T PRK09950 475 VLTALPFLVILLIKVYGFIRWL 496 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555565666666655544
No 104
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=95.28 E-value=4.1 Score=41.84 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=52.5
Q ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh
Q 010416 331 DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG-LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF 409 (511)
Q Consensus 331 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg-~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~ 409 (511)
.+++....-++..+..+..++....-..+..-+++-++..++..| .-|+..-|+ .++ ++..+++..+.+..
T Consensus 393 alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~-------~W~-v~~~~ia~~lL~~g 464 (537)
T COG1292 393 ALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRV-------FWG-VLIGLIAAVLLLIG 464 (537)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHH-------HHH-HHHHHHHHHHHHhC
Confidence 334433333344444554444444445666777888888877766 223222221 122 33344444455555
Q ss_pred cHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcC
Q 010416 410 NVRVLS---HILSVGTLTGYSVVSACVIALRWKD 440 (511)
Q Consensus 410 ~~~~l~---~~~~~~~~~~~~~~~~~~l~~r~~~ 440 (511)
.++.+- -+.++...+..++.+.+.++--+++
T Consensus 465 gl~aLqt~~ii~alPF~~vll~~~~sl~k~l~~d 498 (537)
T COG1292 465 GLEALQTAAIITALPFSLVLLVMMFSLIKDLKQD 498 (537)
T ss_pred CHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence 554444 4445555666677777776654433
No 105
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.58 E-value=7.2 Score=41.09 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=55.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccee---------ccCCCCCCCCChHHHHHHHHHHHHHhh-hhhhhhh
Q 010416 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWSPFAPNGFKEILTGATVVFFAYV-GFDAVAN 280 (511)
Q Consensus 211 l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~e~~~~ 280 (511)
....|+|..+|+......+-.+.++++.+-++...+ ..+|+... +..-+..++..++|+.. |.-....
T Consensus 194 ~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~--~~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 194 GIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL--DPKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT--SHHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred heEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh--HHHHHHHHHHHHhhccCCCcceEEE
Confidence 345678888877766554434444444443322111 11233222 12356888888999885 8888888
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010416 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSL 312 (511)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~ 312 (511)
++.-.|+ +.|++|..........++.++..+
T Consensus 272 ~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~ 302 (523)
T PF00209_consen 272 YGSYNKF-KNNIFRDALIVAFINTLVSLLAGL 302 (523)
T ss_dssp HHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGT
T ss_pred EcCcCCC-CccccccceEEEcCchhhhHhHHH
Confidence 8877776 577888776666666555544433
No 106
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=93.62 E-value=9.6 Score=38.99 Aligned_cols=93 Identities=12% Similarity=-0.069 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhc-HHHHH---H
Q 010416 341 VSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN-VRVLS---H 416 (511)
Q Consensus 341 ~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~-~~~l~---~ 416 (511)
+..++....++..+....+..-+++-.+..++.++.-++- +-++ ...-.+++.+. +++..+.+... .+.+- .
T Consensus 354 ~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~--ep~~-~~ri~W~v~ig-~~a~~ll~~gG~l~~lQ~~~i 429 (453)
T TIGR00842 354 LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGE--EPPK-WVRVFWAVAIG-LIALVLLFSGGSLAALQTTAI 429 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC--CCCc-ccchHHHHHHH-HHHHHHHHhcCcHHHHHHHHH
Confidence 3444555555555555566667777777777553321110 1111 23334554443 33333334333 55444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010416 417 ILSVGTLTGYSVVSACVIALR 437 (511)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~r 437 (511)
+.++...+...+.+.+.++.-
T Consensus 430 i~alP~~~i~~l~~~sl~k~l 450 (453)
T TIGR00842 430 IAALPFSLVMLVVMASLIKDL 450 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666655443
No 107
>COG4146 Predicted symporter [General function prediction only]
Probab=92.83 E-value=10 Score=37.04 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=35.9
Q ss_pred cceehhHHHhchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 010416 125 GAYLYAYTAFNELTAFLVFAQLMLDYHI-GAASIARSLASYVVSILE 170 (511)
Q Consensus 125 g~y~~~~~~~g~~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 170 (511)
-..++.++.|.+.--.+...++.+.|.. ..+....+.+..++++++
T Consensus 104 TIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~ 150 (571)
T COG4146 104 TIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFH 150 (571)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhc
Confidence 4557999999999999999998888855 455666777777888765
No 108
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=92.30 E-value=16 Score=37.98 Aligned_cols=94 Identities=11% Similarity=-0.112 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcC-CCCCchHHHHHHHHHHHHHHhhhcHH---HHHH
Q 010416 341 VSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHP-KRHTPVHSQVWVGIVAGILAGLFNVR---VLSH 416 (511)
Q Consensus 341 ~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~-~~~~P~~a~~~~~~~~~~~~~~~~~~---~l~~ 416 (511)
+..++.+..++.++....+..-+++-.+..++.+|.-++ .|+ +...-.+++.+. +++..+.+....+ ....
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~----~~p~~~~ri~W~v~ig-~ia~~Ll~~GGl~~lQt~si 477 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDG----EEPPLLVRIGWSILVG-IIGIVLLALGGLKPIQTAII 477 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCC----CCCCcchhhHHHHHHH-HHHHHHHHhcCHHHHHHHHH
Confidence 334445555555555556667777888888877653221 111 112333444333 3333333433444 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 010416 417 ILSVGTLTGYSVVSACVIALRWK 439 (511)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~r~~ 439 (511)
+.++...+...+.+.+.++.-++
T Consensus 478 i~alPf~~i~~l~~~sl~k~l~~ 500 (504)
T PRK03356 478 AGGCPLFFVNIMVTLSFIKDAKQ 500 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666655433
No 109
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=90.67 E-value=18 Score=35.57 Aligned_cols=96 Identities=14% Similarity=-0.091 Sum_probs=64.1
Q ss_pred hhHHHHHHhcccccchhhhchhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHH
Q 010416 63 LFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (511)
Q Consensus 63 ~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~ 141 (511)
.|-++..=+.++.|+|-...|-.+.. -|+. +++..+++.++.-.+--..+-+.|.--+ +-+.-+.+++..||+.+.+
T Consensus 54 ~~vlfghhf~sIAGaGPI~GPi~aa~-~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~-G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 54 KWVLFGHHFASIAGAGPIVGPILAAQ-FGWLPALLWIVFGCIFAGAVHDYGSLMASVRHK-GKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred hHHhhHHHHHHHhccccchHHHHHHH-hcchHHHHHHHHccHHHHHHHHHHHHhhhhcCC-CccHHHHHHHHHHHHHHHH
Confidence 34555566667778888888877744 4664 6665666666665555555555555444 6677888999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010416 142 VFAQLMLDYHIGAASIARS 160 (511)
Q Consensus 142 ~g~~~~~~~~~~~~~~~~~ 160 (511)
..+..++..+...+.....
T Consensus 132 f~~f~~~~lilV~avF~~v 150 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFADV 150 (376)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877777666555544433
No 110
>COG4025 Predicted membrane protein [Function unknown]
Probab=88.53 E-value=7.5 Score=35.08 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCCCc
Q 010416 364 QSRLYLGLGRDGLLP 378 (511)
Q Consensus 364 ~sR~l~~~a~dg~lP 378 (511)
.-|-+.++.||+.+|
T Consensus 56 ~ve~v~e~~re~~i~ 70 (284)
T COG4025 56 KVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHhcCCCc
Confidence 346788999999876
No 111
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=86.01 E-value=20 Score=31.20 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhhhhcccchH----HHHHHHHHHHHHHHHhhhcccc
Q 010416 428 VVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASY----ILLIVAVVIAVLASAMLCLRHV 503 (511)
Q Consensus 428 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 503 (511)
+-...+..+|.+..+..|+ ++|...........+.++.......-|+.. ..+...++..+.+..+++.++|
T Consensus 141 my~my~y~yr~~ad~sqr~-----~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk 215 (226)
T COG4858 141 MYIMYYYAYRMRADNSQRP-----GTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKK 215 (226)
T ss_pred HHHHHHHHHHhhcccccCC-----chHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555444454 555555555555554444433322222111 1333334434444455554544
Q ss_pred cC
Q 010416 504 SY 505 (511)
Q Consensus 504 ~~ 505 (511)
+.
T Consensus 216 ~N 217 (226)
T COG4858 216 KN 217 (226)
T ss_pred hc
Confidence 43
No 112
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=85.91 E-value=11 Score=39.55 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=53.9
Q ss_pred CcceehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHH
Q 010416 124 GGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI 203 (511)
Q Consensus 124 Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (511)
...|+|.++.|+++.-......+.+..+.........-+..+++..++ .-+ ......
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------~~~---------------l~~~~~ 164 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------NLY---------------LIVVIL 164 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------Cce---------------eehHHH
Confidence 577899999999886666666666666655555555555555554331 000 011122
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010416 204 LLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 243 (511)
Q Consensus 204 ~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 243 (511)
...+.....+-|+|..-+.-.+=+.+.+.....+++.+..
T Consensus 165 ~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~ 204 (585)
T KOG2349|consen 165 GLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTM 204 (585)
T ss_pred HHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeeh
Confidence 2333334444566766665555566666666666665544
No 113
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=81.45 E-value=28 Score=31.51 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.9
Q ss_pred hhccccc
Q 010416 498 LCLRHVS 504 (511)
Q Consensus 498 ~~~~~~~ 504 (511)
++.|+|+
T Consensus 195 ~~lkkk~ 201 (206)
T PF06570_consen 195 FYLKKKY 201 (206)
T ss_pred HHHHHHh
Confidence 3334444
No 114
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=79.69 E-value=93 Score=33.44 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=36.6
Q ss_pred ChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHHHHHHHHH-HHH---HHHHHHHHhhc
Q 010416 62 GLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAA-SVL---NALCYAELASR 118 (511)
Q Consensus 62 ~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ll~~~~-~~~---~~~~~ael~~~ 118 (511)
+..+.++-.+|..+|-|=+.. |-..+.+||.+.++-|++..++ ..+ .-.++.++.++
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~ 100 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQ 100 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcC
Confidence 677888888898999888885 5567788887655555544444 334 33444444433
No 115
>PTZ00206 amino acid transporter; Provisional
Probab=75.47 E-value=80 Score=32.69 Aligned_cols=56 Identities=4% Similarity=-0.133 Sum_probs=44.8
Q ss_pred ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHh
Q 010416 327 APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFA 382 (511)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~ 382 (511)
..+.++.+...++++..+..+..++.+++.+.+++...+..+...-++...|+++.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 35777888877889999999999999999999999999998887665444455554
No 116
>PF14256 YwiC: YwiC-like protein
Probab=73.18 E-value=52 Score=27.23 Aligned_cols=46 Identities=17% Similarity=0.034 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010416 396 VWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (511)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~ 441 (511)
|.+.++..++......+..-.....+.+..|....-....+|.|++
T Consensus 8 W~Ml~~P~l~G~~~~~~w~~~~L~~aw~~~yl~~~p~~~~~k~r~~ 53 (129)
T PF14256_consen 8 WAMLLVPFLLGMAGGPSWAHLPLLLAWLFGYLAFYPFLLWLKQRRR 53 (129)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444555555554444444444456667777777777777776553
No 117
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=67.32 E-value=1.3e+02 Score=29.58 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=25.5
Q ss_pred hhhhhhhhcCCCCC----chHHHHHHHHHHHHHHHHHHHHHH
Q 010416 278 VANSAEESKKPQRD----LPIGILGSLLICAALYVGVSLVLT 315 (511)
Q Consensus 278 ~~~~~~E~k~p~k~----~p~ai~~~~~~~~~~y~~~~~~~~ 315 (511)
....++++.++++| .|+++.++.+.+.-.-++...+..
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~g~ 69 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAIGY 69 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555 899999988887777665544444
No 118
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=67.19 E-value=1.7e+02 Score=30.68 Aligned_cols=99 Identities=13% Similarity=-0.024 Sum_probs=63.1
Q ss_pred hHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhchhhHHHHH
Q 010416 64 FELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVF 143 (511)
Q Consensus 64 ~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~~~g~~~g 143 (511)
+-++..=+.++.|+|-.+.|-.+.+.|-+...+..+++.+++-.+--.+.-+.|.--+ +-+.-+.+.+-+|+..+.+..
T Consensus 55 ~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~-G~Si~~ia~~~lG~~a~~~~~ 133 (575)
T COG1966 55 WVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHG-GKSIGEIAGKYLGRTAKVFFL 133 (575)
T ss_pred hhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccC-CccHHHHHHHHhhhhHHHHHH
Confidence 3344455666778999999987777764555555566666665555555555554444 556778888889998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010416 144 AQLMLDYHIGAASIARSLAS 163 (511)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~ 163 (511)
...++-.+...+..+...+.
T Consensus 134 ~~~l~iliiv~Avfa~vv~~ 153 (575)
T COG1966 134 LLALILLILVGAVFAAVIAK 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66655555544444443333
No 119
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=64.07 E-value=1.5e+02 Score=30.16 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh
Q 010416 355 TTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF 409 (511)
Q Consensus 355 ~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~ 409 (511)
+++....++.|+.+..+=-|+. |+| ..--..+++++++++++.+..
T Consensus 70 ~s~f~i~YG~sKf~~G~~sDr~--------npr-~fm~~gLilsai~nil~Gfs~ 115 (448)
T COG2271 70 GSAFSITYGVSKFVMGVLSDRS--------NPR-YFMAFGLILSAIVNILFGFSP 115 (448)
T ss_pred HHHHHHHHHHHHHHhhhhcccC--------CCc-eeehHHHHHHHHHHHHHhhhh
Confidence 4445566899999998877754 444 222345566666665555444
No 120
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=63.48 E-value=30 Score=29.31 Aligned_cols=51 Identities=10% Similarity=-0.178 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhcccccCCcc
Q 010416 457 GVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYKPL 508 (511)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (511)
.+++.+...........+...+++...+...++ .....+.+++..|++.+.
T Consensus 34 IIlPplfmstG~lmf~~P~~~~~~~~~l~A~~~-G~lFs~~Li~ts~fEvrd 84 (148)
T PF07301_consen 34 IILPPLFMSTGFLMFVFPFFRPPWLEVLEAFLV-GALFSYPLIKTSKFEVRD 84 (148)
T ss_pred HHHhHHHHHHHHHHHhCccccchHHHHHHHHHH-HHHHHHHHHHhceEEEEC
Confidence 455555544444444444444455444333333 333666677777766553
No 121
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=54.12 E-value=4.2 Score=37.74 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Q 010416 452 SAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVV 489 (511)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (511)
..|..+..|+..++..++.+....-...|.+.++=...
T Consensus 135 s~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~W 172 (381)
T PF05297_consen 135 SFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYW 172 (381)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666555555555555555566665544444
No 122
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=53.96 E-value=3.2e+02 Score=29.57 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhcCCC--CCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010416 264 GATVVFFAYVGFDAVANSAEESKKPQ--RDLPIGILGSLLICAALYVGVSLVLTGMV 318 (511)
Q Consensus 264 ~~~~~~~~~~G~e~~~~~~~E~k~p~--k~~p~ai~~~~~~~~~~y~~~~~~~~~~~ 318 (511)
.+....+.+...+.+..+..|.|--. |.-||.+..+.++.+++-.+++..+...+
T Consensus 436 ~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~ 492 (624)
T PF03169_consen 436 NLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL 492 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677888888999999988654 66788888888888888777777666444
No 123
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=47.74 E-value=2.8e+02 Score=27.12 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 297 LGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (511)
Q Consensus 297 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 371 (511)
.++++++++++.+......-.--. . +.....+..+...++....+..+..+..+++.+.....+++-.+.++
T Consensus 39 ~~gIivs~vlf~~~g~vim~ig~~--f-~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~ 110 (349)
T COG3949 39 ILGIILSTVLFTLSGAVIMTIGKK--F-NATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEM 110 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--h-cccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 345666666666655554422111 1 12224557777778888888888888888888887777776666653
No 124
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=47.65 E-value=93 Score=22.95 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=31.5
Q ss_pred hhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 010416 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG 316 (511)
Q Consensus 278 ~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~ 316 (511)
-..+-.|++.|=|.+.+.++.+...+..+..++...=..
T Consensus 6 ~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~ 44 (75)
T PF11998_consen 6 YARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI 44 (75)
T ss_pred HHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999998887776655443
No 125
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=47.31 E-value=25 Score=31.30 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=26.1
Q ss_pred hhhhhcCCC-CCchHHHHHHHHHHHHHHHHHHHH
Q 010416 281 SAEESKKPQ-RDLPIGILGSLLICAALYVGVSLV 313 (511)
Q Consensus 281 ~~~E~k~p~-k~~p~ai~~~~~~~~~~y~~~~~~ 313 (511)
-.|-.+||| |++||+++.+.+.+.++-++..+.
T Consensus 203 TIEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 203 TIEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eeecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 346678998 899999999999888877665443
No 126
>PRK11281 hypothetical protein; Provisional
Probab=45.32 E-value=5.6e+02 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=19.3
Q ss_pred hhhhhcCC----CCCchHHHHHHHHHHHHHHHHH
Q 010416 281 SAEESKKP----QRDLPIGILGSLLICAALYVGV 310 (511)
Q Consensus 281 ~~~E~k~p----~k~~p~ai~~~~~~~~~~y~~~ 310 (511)
.++++.++ ....|+++.++++.+.-..++.
T Consensus 527 ~~~~ig~~~~D~~~~T~~al~~t~l~alp~~l~~ 560 (1113)
T PRK11281 527 LAADIGTLKRDSQLHTPKAILITLLLALPVTLIF 560 (1113)
T ss_pred HHHhcCCcccCcccccHHHHHHHHHHHHHHHHHH
Confidence 34444444 3457999999988776555543
No 127
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=43.45 E-value=2.4e+02 Score=25.05 Aligned_cols=117 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHH
Q 010416 386 PKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIA 465 (511)
Q Consensus 386 ~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (511)
+..+.|++...+..++..+..++.-++...+.......+......-+.+..-....++..+ +.|.....-++..+
T Consensus 13 ~~l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~lli~Gi~~ii~af~~r~~~-----~~W~lll~Gil~i~ 87 (185)
T COG3247 13 EMLKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGILLLISGIIEIISAFGNRSDN-----SFWPLLLSGILSIL 87 (185)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHH
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhcccccCCc
Q 010416 466 CCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSYKP 507 (511)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (511)
........+....-...+.+...++..++.-....-+.++++
T Consensus 88 ~gil~~~~~~~~~~~l~~lia~~~i~~GI~ri~~~~~~~~~~ 129 (185)
T COG3247 88 LGILAGFNPGLGALVLTYLIAIWFIASGILRIVVAFRLRSLP 129 (185)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
No 128
>PRK10746 putative transport protein YifK; Provisional
Probab=40.73 E-value=1.5e+02 Score=30.66 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 010416 484 LIVAVVIAVLASAMLC 499 (511)
Q Consensus 484 ~~~~~~~~~~~~~~~~ 499 (511)
..+..+++..+.|+++
T Consensus 433 ~~~~~~~~~~~~y~~~ 448 (461)
T PRK10746 433 VGIIFLLAVTLIYKVF 448 (461)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444433
No 129
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.42 E-value=29 Score=28.37 Aligned_cols=12 Identities=8% Similarity=-0.222 Sum_probs=4.3
Q ss_pred HHHhhhcccccC
Q 010416 494 ASAMLCLRHVSY 505 (511)
Q Consensus 494 ~~~~~~~~~~~~ 505 (511)
+++++++|+|++
T Consensus 83 li~y~irR~~Kk 94 (122)
T PF01102_consen 83 LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHS--
T ss_pred HHHHHHHHHhcc
Confidence 334444444443
No 130
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=39.26 E-value=3.4e+02 Score=25.63 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcH-----HHHHHHHH
Q 010416 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNV-----RVLSHILS 419 (511)
Q Consensus 345 ~~i~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~-----~~l~~~~~ 419 (511)
+-...+...+.........+.|.+....++. +.+.+.++ .+.|.+.++...+...+....... +.+..=..
T Consensus 161 ~P~~~~i~~~~~~~~~~~l~~~il~r~~~~~---~~~~~~~~-~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i~~Nl~ 236 (290)
T PF09991_consen 161 FPALLIISALLMSLINYYLARRILRRLGIPI---PPLPPFRE-WRLPRWLIWLLIVALALSLVGGGFGGSWLQIIGLNLL 236 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCCCchHH-HhCcHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3333333344444444555556554443331 22222233 688999888775554433332222 12222123
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC
Q 010416 420 VGTLTGYSVVSACVIALRWKDRTS 443 (511)
Q Consensus 420 ~~~~~~~~~~~~~~l~~r~~~~~~ 443 (511)
....+.|.+..++.+....++++.
T Consensus 237 ~v~~~l~~~qGla~~~~~~~~~~~ 260 (290)
T PF09991_consen 237 IVLSFLFFIQGLAVIHFFLKRRKM 260 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444567778888888876666543
No 131
>PF14007 YtpI: YtpI-like protein
Probab=38.06 E-value=1.8e+02 Score=22.25 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 010416 462 IIIACCGFGAGLFYRINASYILLIVAVVIAVLA 494 (511)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (511)
++..+..+.+--.+..+++..+++..++++.++
T Consensus 39 lG~fl~~fgiNQ~~~~~st~~~iV~~ifl~lG~ 71 (89)
T PF14007_consen 39 LGIFLILFGINQMFLFGSTVRLIVGAIFLVLGL 71 (89)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhH
Confidence 344444444433444667777766666644443
No 132
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=37.60 E-value=44 Score=28.72 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=25.2
Q ss_pred hhhhcCCC-CCchHHHHHHHHHHHHHHHHHHHHH
Q 010416 282 AEESKKPQ-RDLPIGILGSLLICAALYVGVSLVL 314 (511)
Q Consensus 282 ~~E~k~p~-k~~p~ai~~~~~~~~~~y~~~~~~~ 314 (511)
.|..+||| |+.||+.+.+.+...+.-++..+..
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~v 227 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLLV 227 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 46678998 8899999999888877766554443
No 133
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=36.36 E-value=3.4e+02 Score=24.89 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhhhcccchHH--HHHHHHHHHHHHHHhhhcccccCCc
Q 010416 459 ICLIIIACCGFGAGLFYRINASYI--LLIVAVVIAVLASAMLCLRHVSYKP 507 (511)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (511)
+|+.+...++.........+.+.. ++...+++.....-...||.+.+.|
T Consensus 110 vCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~il~ss~i~r~~~~~~p 160 (224)
T PF09930_consen 110 VCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILILLSSFIFRRLKKPYP 160 (224)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 455555555555555555555555 3333333444444445554444443
No 134
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=35.22 E-value=2.4e+02 Score=25.72 Aligned_cols=19 Identities=5% Similarity=0.366 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 010416 423 LTGYSVVSACVIALRWKDR 441 (511)
Q Consensus 423 ~~~~~~~~~~~l~~r~~~~ 441 (511)
++.+.+...+..++|+|+.
T Consensus 35 lvv~~lli~~~~kyr~r~~ 53 (217)
T TIGR01432 35 FVVFVLFTIFLVKYRYRKD 53 (217)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4455555566666665543
No 135
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=33.29 E-value=3.6e+02 Score=24.17 Aligned_cols=25 Identities=8% Similarity=-0.051 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccC
Q 010416 481 YILLIVAVVIAVLASAMLCLRHVSY 505 (511)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (511)
..+...+++.++.++.+++.|.|+.
T Consensus 117 ~y~~yL~~v~laVl~fr~~Fr~ky~ 141 (206)
T PF09874_consen 117 PYYTYLGFVFLAVLAFRYYFRSKYG 141 (206)
T ss_pred hHHHHHHHHHHHHHHHhhheeeeec
Confidence 3344444555555666666666664
No 136
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=32.28 E-value=5.5e+02 Score=26.07 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCchHHh
Q 010416 337 GLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL-GLGRDGLLPSIFA 382 (511)
Q Consensus 337 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~-~~a~dg~lP~~~~ 382 (511)
|+.....++....+-+..++..+...+.++... +|-|+|+=|++-+
T Consensus 90 Ggla~~~v~as~~fgaisGS~~A~~a~~G~i~iP~M~k~GY~~~~A~ 136 (416)
T PF06808_consen 90 GGLAQVAVVASALFGAISGSSVANAAAIGSITIPEMKKAGYPPEFAA 136 (416)
T ss_pred ccchhHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHcCCCHHHhH
Confidence 444444555556666666666666666666654 4666666554333
No 137
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=31.84 E-value=5.8e+02 Score=26.17 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=56.2
Q ss_pred ehhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHH
Q 010416 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (511)
Q Consensus 128 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (511)
..+.+.+|+....+.+...+++-..+........++++...+. ..+ .....+..++
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---------isY---------------~~~v~i~~l~ 324 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---------LSY---------------RTLVFILGGF 324 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CcH---------------HHHHHHHHHH
Confidence 4566789999999999999999999999999999999888432 111 3456677777
Q ss_pred HHHHHHhhhhhHHHHHHHH
Q 010416 208 LTIVLCWGVGESSVLNSCM 226 (511)
Q Consensus 208 ~~~l~~~g~~~~~~~~~~~ 226 (511)
...+...|.+..-++..-.
T Consensus 325 S~~lSn~G~~~II~~s~Pi 343 (439)
T PRK15433 325 SMVVSNLGLSQLIQISVPV 343 (439)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 7777778877665555433
No 138
>PLN02351 cytochromes b561 family protein
Probab=27.33 E-value=5.1e+02 Score=24.08 Aligned_cols=66 Identities=5% Similarity=-0.215 Sum_probs=30.9
Q ss_pred CCCCcccccchhhHHHHHHHHHHHHHHHhhhhc-------------ccchHHHHHHHHHHHHHHHHhhhcccccCCccc
Q 010416 444 RNDSSRLTSAWRQGVICLIIIACCGFGAGLFYR-------------INASYILLIVAVVIAVLASAMLCLRHVSYKPLL 509 (511)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (511)
.|....|++......+-.+++..+..++..-.. +.-..+.+.+.+++.+.++.+...+.++++|.+
T Consensus 151 ~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~~kr~~~ 229 (242)
T PLN02351 151 TRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILAAVLPKYQSHSS 229 (242)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHhhcCccccCCCc
Confidence 344444555555555555555555554432111 113344555555555544444444455554443
No 139
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=26.79 E-value=2.9e+02 Score=24.62 Aligned_cols=58 Identities=14% Similarity=0.015 Sum_probs=31.1
Q ss_pred ChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 010416 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPA 121 (511)
Q Consensus 62 ~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~ 121 (511)
..+.+..+++++ |+--....-..+....+.-+...++...++.......+..-.+.|.
T Consensus 97 ~i~~Va~iTiAn--GgDNigIYiP~Fa~~s~~~l~v~l~vF~ilv~v~c~la~~l~~~p~ 154 (191)
T PF03596_consen 97 LILTVAAITIAN--GGDNIGIYIPLFASLSLAELIVILIVFLILVGVWCFLAYKLARIPI 154 (191)
T ss_pred hhHHhhhhhhhc--CCCeEEEeehhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 356676777766 3222222223444445555555555555555555556666667775
No 140
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.93 E-value=1e+02 Score=29.13 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=10.8
Q ss_pred HHHHHHHhhhcccccCCccc
Q 010416 490 IAVLASAMLCLRHVSYKPLL 509 (511)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~ 509 (511)
+++.+.+|+++|||+..++|
T Consensus 274 vliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 274 VLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHhhccccccc
Confidence 34444456667766654443
No 141
>PRK09488 sdhD succinate dehydrogenase cytochrome b556 small membrane subunit; Provisional
Probab=25.87 E-value=3.3e+02 Score=22.00 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=42.5
Q ss_pred eccCCCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010416 246 DVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSL 312 (511)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~ 312 (511)
+++.+..+..+.+...+..+......+-++-..-.+.||.-++ +..++..........+.|.+-.+
T Consensus 44 ~y~~~~~~f~~p~~ai~~ll~l~~~~~H~~iGmq~VieDYV~~-~~lR~~l~~~~~~~l~~~~~w~~ 109 (115)
T PRK09488 44 TYEVWRGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKP-LALRLMLQLVIVVALVVYVIYGF 109 (115)
T ss_pred CHHHHHHHHcChHHHHHHHHHHHHHHHHHHHcchHHHHHccCc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655666666666666666666666777777778887664 33566676677677777765443
No 142
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.77 E-value=82 Score=20.86 Aligned_cols=15 Identities=7% Similarity=-0.201 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhcccc
Q 010416 489 VIAVLASAMLCLRHV 503 (511)
Q Consensus 489 ~~~~~~~~~~~~~~~ 503 (511)
++..++++|.+++++
T Consensus 20 ~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 20 VFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHcccc
Confidence 344445555555444
No 143
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.83 E-value=1.8e+02 Score=22.80 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=12.6
Q ss_pred CCcccccChhHHHHHHhcccccchhhh
Q 010416 55 EGLLRRLGLFELVLIGVGASVGAGIFV 81 (511)
Q Consensus 55 ~~l~r~l~~~~~~~l~i~~~ig~gi~~ 81 (511)
++.-|.++....+.+.+...+-.|++.
T Consensus 36 ~~~~~~l~~~g~IG~~~v~pil~G~~l 62 (100)
T TIGR02230 36 RSIWEGLGMFGLIGWSVAIPTLLGVAV 62 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444433333333
No 144
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.61 E-value=1.2e+02 Score=23.84 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=6.8
Q ss_pred HHHHHHHhhhcccc
Q 010416 490 IAVLASAMLCLRHV 503 (511)
Q Consensus 490 ~~~~~~~~~~~~~~ 503 (511)
......++..++++
T Consensus 54 ~~~~~a~~~ar~~~ 67 (103)
T PF10067_consen 54 ITTFLAVRAARRGR 67 (103)
T ss_pred HHHHHHHHHHHhCC
Confidence 44445555555444
No 145
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=23.33 E-value=7.7e+02 Score=24.81 Aligned_cols=24 Identities=0% Similarity=0.069 Sum_probs=13.0
Q ss_pred hhcCCCCCchHHHHHHHHHHHHHH
Q 010416 383 KVHPKRHTPVHSQVWVGIVAGILA 406 (511)
Q Consensus 383 ~~n~~~~~P~~a~~~~~~~~~~~~ 406 (511)
...+|++.+.+.+.+..+++.+..
T Consensus 59 ~~aDr~~~~~~~l~~~~l~~~~~~ 82 (400)
T PF03825_consen 59 AIADRFGSAKRILALLSLLSALAL 82 (400)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHH
Confidence 334445666666666555554433
No 146
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.70 E-value=3.7e+02 Score=20.80 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=18.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Q 010416 452 SAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVV 489 (511)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (511)
++|.+.+..++++++.++..+.+- ..+....+..+.+
T Consensus 33 ~K~iPlIs~viGilLG~~~~~~~~-~~~l~~~~~aG~l 69 (93)
T PF06946_consen 33 NKWIPLISVVIGILLGAAAYPLTG-DGNLALMAWAGGL 69 (93)
T ss_pred cchhhHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHH
Confidence 566666666666665554443332 2344443333333
No 147
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=22.42 E-value=4e+02 Score=21.20 Aligned_cols=22 Identities=5% Similarity=-0.118 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCC
Q 010416 423 LTGYSVVSACVIALRWKDRTSRND 446 (511)
Q Consensus 423 ~~~~~~~~~~~l~~r~~~~~~~~~ 446 (511)
.+...++.++.. .||-+|..++
T Consensus 55 ~l~~~i~~lal~--vRRlhD~G~s 76 (120)
T PF05656_consen 55 ILLLFIPSLALT--VRRLHDIGRS 76 (120)
T ss_pred HHHHHHHHHHHH--hhhhhcCCCC
Confidence 334444444433 3445555554
No 148
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=22.41 E-value=2.8e+02 Score=22.95 Aligned_cols=49 Identities=10% Similarity=-0.119 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhcccc
Q 010416 455 RQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHV 503 (511)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511)
....+|++.+++...+.......+.+.........++.++..+++.|+.
T Consensus 73 l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~ 121 (135)
T PF04246_consen 73 LVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRL 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445666666665555544433322222333333334444344444333
No 149
>PTZ00370 STEVOR; Provisional
Probab=21.62 E-value=1.1e+02 Score=29.02 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=9.0
Q ss_pred HHHHHHHhhhcccccCC
Q 010416 490 IAVLASAMLCLRHVSYK 506 (511)
Q Consensus 490 ~~~~~~~~~~~~~~~~~ 506 (511)
+++.+.+|+++|||+..
T Consensus 270 vliilYiwlyrrRK~sw 286 (296)
T PTZ00370 270 VLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHhhcchh
Confidence 33444455666666543
No 150
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=21.28 E-value=4.2e+02 Score=21.44 Aligned_cols=21 Identities=10% Similarity=-0.020 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHh-hhccc
Q 010416 482 ILLIVAVVIAVLASAM-LCLRH 502 (511)
Q Consensus 482 ~~~~~~~~~~~~~~~~-~~~~~ 502 (511)
.+.+...+++++..|+ .++++
T Consensus 52 p~fi~~tl~~lg~a~~~~yr~~ 73 (116)
T PF02411_consen 52 PYFIALTLLFLGYAFWRLYRPR 73 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 3444444444444444 55443
No 151
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=21.25 E-value=59 Score=25.30 Aligned_cols=14 Identities=7% Similarity=-0.045 Sum_probs=6.9
Q ss_pred HHHHHHHhhhcccc
Q 010416 490 IAVLASAMLCLRHV 503 (511)
Q Consensus 490 ~~~~~~~~~~~~~~ 503 (511)
+++++.||++.|+|
T Consensus 82 lv~~l~w~f~~r~k 95 (96)
T PTZ00382 82 LVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHhheeEEeec
Confidence 44445555555543
No 152
>cd03494 SQR_TypeC_SdhD Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the high potential quinine, ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. SdhD and SdhC are the two transmembrane proteins of bacterial SQRs. They contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD an
Probab=21.15 E-value=4e+02 Score=20.73 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=39.2
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHH
Q 010416 247 VSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGV 310 (511)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~ 310 (511)
++.+..+..+.+...+..+......+=.+-..-++-||.-++ +..++..........+.|..-
T Consensus 31 y~~~~~~~~~p~~~i~~~l~~~~~~~H~~~Glr~vi~DYv~~-~~lr~~l~~~~~~~l~~~~~~ 93 (99)
T cd03494 31 YEAWSGLFSSLWMKIFTLLALLALLLHAWIGLWDILTDYVKP-AGLRLLLQVLIILVLFGYLIW 93 (99)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666777777888888764 335566666666666666543
No 153
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=20.89 E-value=3.4e+02 Score=22.92 Aligned_cols=51 Identities=10% Similarity=-0.102 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhcccccC
Q 010416 455 RQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHVSY 505 (511)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (511)
...+.+++++++.....-..+....+..........++++..+.|.|+..+
T Consensus 80 LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~ 130 (150)
T COG3086 80 LVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLAK 130 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555555543344333444433333334444444444444444
No 154
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=20.86 E-value=8.8e+02 Score=27.40 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 010416 361 LYVQSRLYLGLG 372 (511)
Q Consensus 361 ~~~~sR~l~~~a 372 (511)
....-|+..++.
T Consensus 442 IVI~ErIreel~ 453 (855)
T PRK14726 442 VLIYERIREEEK 453 (855)
T ss_pred EEeHHHHHHHHH
Confidence 344456666653
No 155
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.73 E-value=3.4e+02 Score=20.06 Aligned_cols=53 Identities=11% Similarity=-0.057 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010416 393 HSQVWVGIVAGILAGLF-NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRND 446 (511)
Q Consensus 393 ~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~ 446 (511)
..+.+.++++.+..... ++....-....+..++.++..-.+-.+ +|+|-++.+
T Consensus 15 ~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y-~r~p~~W~~ 68 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLVVVPPWPFY-NRHPLKWLP 68 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeCCcHhh-cCCcccCCC
Confidence 44555555565555544 555555555556666666555555444 466655554
Done!