Query 010416
Match_columns 511
No_of_seqs 181 out of 2496
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 2.2E-50 7.4E-55 414.0 40.7 419 55-507 4-435 (445)
2 3gia_A Uncharacterized protein 100.0 1.9E-49 6.5E-54 406.9 37.2 365 56-442 3-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 6.8E-46 2.3E-50 387.3 38.9 399 53-474 5-430 (511)
4 2jln_A MHP1; hydantoin, transp 99.3 1.5E-08 5.3E-13 103.9 34.4 285 56-371 22-329 (501)
5 3dh4_A Sodium/glucose cotransp 98.5 5.8E-05 2E-09 77.9 26.0 284 58-369 19-349 (530)
6 2xq2_A Sodium/glucose cotransp 98.4 0.00047 1.6E-08 72.1 31.8 282 58-368 48-377 (593)
7 2a65_A Leutaa, Na(+):neurotran 98.2 0.0027 9.1E-08 64.5 31.6 113 196-309 167-292 (519)
8 4ain_A Glycine betaine transpo 90.7 15 0.00052 37.0 24.9 24 58-81 93-116 (539)
9 2wsw_A BCCT family betaine/car 78.7 56 0.0019 32.6 30.2 25 57-81 87-111 (509)
10 2l2t_A Receptor tyrosine-prote 51.9 12 0.00042 23.4 2.8 10 496-505 31-40 (44)
11 2ks1_B Epidermal growth factor 50.7 13 0.00044 23.3 2.7 10 496-505 32-41 (44)
12 4djk_A Probable glutamate/gamm 27.0 4.1E+02 0.014 26.0 11.3 41 435-475 394-434 (511)
13 2jwa_A Receptor tyrosine-prote 22.3 1.5E+02 0.0051 18.4 4.8 10 433-442 32-41 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=2.2e-50 Score=414.03 Aligned_cols=419 Identities=21% Similarity=0.337 Sum_probs=339.2
Q ss_pred CCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHh
Q 010416 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (511)
Q Consensus 55 ~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~ 134 (511)
++.||++++++..++.++.++|+|+|..|+.. ..+|+.++++|++++++.++.+++++|+++++|+ +||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-ASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence 45689999999999999999999999998874 4578889999999999999999999999999999 999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
||.+|++.||.+++++....+.+....++++.. ++|... ++ ....++++++++++..+|++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~-------------~~~~~~~~~~~~~~~~in~~ 142 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSY---FFPILK---DP-------------WVLTITCVVVLWIFVLLNIV 142 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---TCGGGG---SH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCcccc---cc-------------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888888888887765 333211 11 12367888899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCC-CCCCCC---hHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCC
Q 010416 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k 290 (511)
|.|...+++.+...++++.++++++.++.+.+.+++. ++.+.+ +.+++.++....|+|.|+|.+++++||+|||+|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r 222 (445)
T 3l1l_A 143 GPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence 9999999999999999999988888877766555543 333333 457888999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL 369 (511)
Q Consensus 291 ~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~ 369 (511)
++||++..+..++.++|++..++.....|.++.. .+.|+.++++...+++...++.+..+++.+++.++.+++++|+++
T Consensus 223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 302 (445)
T 3l1l_A 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888764 467899999988888888899999999999999999999999999
Q ss_pred HHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhh-------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010416 370 GLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRT 442 (511)
Q Consensus 370 ~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 442 (511)
+|+|||.+|++|+|+||+ ++|+++++++.+++.++.+.. .++.+.++.++..++.|.+.+++.+++|+|+|
T Consensus 303 ~~a~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~- 380 (445)
T 3l1l_A 303 AAADDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF- 380 (445)
T ss_dssp HHHHTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-
T ss_pred HHHhCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-
Confidence 999999999999999985 999999999999887766542 46889999999999999999999999998776
Q ss_pred CCCCCcccccchhhHHHHHHHHHHHHHHHhhhhcccchHHHH-HHHHHHHHHHHHhhhcccccCCc
Q 010416 443 SRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILL-IVAVVIAVLASAMLCLRHVSYKP 507 (511)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 507 (511)
++|. +....++.++.+.+.+.... .++.... .....+++...|.+.+|++++++
T Consensus 381 ~~r~-------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (445)
T 3l1l_A 381 GKAR-------PAYLAVTTIAFLYCIWAVVG----SGAKEVMWSFVTLMVITAMYALNYNRLHKNP 435 (445)
T ss_dssp GGGC-------TTTHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred cccc-------chhHHHHHHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 3221 23345556666555555432 2233323 33333444445555544444433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=1.9e-49 Score=406.86 Aligned_cols=365 Identities=24% Similarity=0.370 Sum_probs=326.0
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhc
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g 135 (511)
+.||+++.++..+++++.++|+|++..++.....+|++++++|++++++.++.+++++|+++++|+ +||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHhC
Confidence 358999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 136 ELT-AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 136 ~~~-g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
|.+ +...+|.++++|....+.++..+++++...++ . ..++| ...+++.++++++..+|++
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~~-------------~~~~~~~~~~~~~~~in~~ 142 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN---A---PINTF-------------NIAITEIGIVAFFTALNFF 142 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---C---CCCHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C---CCchH-------------HHHHHHHHHHHHHHHHHHH
Confidence 963 55568999999999999999999999988432 1 11122 2256788999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccceeccCCCC-CCCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhcCCCCCch
Q 010416 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLP 293 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p 293 (511)
|.|..++++.+...++++.++++++.++...+.+|+.+ +.++++.+++.++...+|+|.|+|.+++++||+|||+|++|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip 222 (444)
T 3gia_A 143 GSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVP 222 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchh
Confidence 99999999999999999999988888887777777776 44566678888989999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCC--CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 294 IGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (511)
Q Consensus 294 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 371 (511)
|++..+..++.++|++..++.....|.++.. ++.|+.+..+...+++...++.+..+++.+++.++.+++.+|++++|
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~ 302 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888887753 34577788887777888888999999999999999999999999999
Q ss_pred HhCCCCchHHhhhcCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010416 372 GRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRT 442 (511)
Q Consensus 372 a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 442 (511)
||||.+|++|+|+|+ ++|.+++++..+++.++.+..+++.+.++.+++.++.|.+.+++.+++|+|+|+
T Consensus 303 a~dg~lP~~f~~~~~--~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 303 AKDGELPEFFERKVW--FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp HHHSSCCSSCCTTSC--CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred HHCCCCCHHHhCCCC--CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999985 569999999999999888888999999999999999999999999999877643
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=6.8e-46 Score=387.34 Aligned_cols=399 Identities=18% Similarity=0.208 Sum_probs=302.8
Q ss_pred CCCCcccccChhHHHHHHhcccccchhhhchhhhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHhh--cCccccCcceeh
Q 010416 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELAS--RFPAVVGGAYLY 129 (511)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~~~~~ael~~--~~p~~~Gg~y~~ 129 (511)
+++++||++++++..+++++.++| ++..+. ...+|+..++.++++.+.. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE--EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC--CCChhhh
Confidence 466789999999999999999986 344443 4567887777777777765 579999999999 999 8999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHH
Q 010416 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (511)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (511)
+++.+||.+|++.||.+++++....+......+.++...+. .|... .+.| ...+++++++++++
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~--~~~~-------------~~~~~~~~~~~~~~ 142 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK-WPALN--EDPI-------------TKTIAALIILWALA 142 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT-CGGGT--SCSS-------------HHHHHHHHHHHHHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccccc--cCcH-------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999888888877777754210 12111 1112 33678889999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH-HHHHHhhhccce---ec----cCCCCCCCCC-hHHHHHHHHHHHHHhhhhhhhhh
Q 010416 210 IVLCWGVGESSVLNSCMTVVKVII-VIVVIFAGAFEV---DV----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVAN 280 (511)
Q Consensus 210 ~l~~~g~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~---~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~G~e~~~~ 280 (511)
.+|++|.|...+++.+.+.++++. ++++++.++... +. .++.++.|+. ..+.+.++...+|+|.|+|.+++
T Consensus 143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~ 222 (511)
T 4djk_A 143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASAT 222 (511)
T ss_dssp HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTG
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999988775443 444444443321 11 1233333331 11334556778999999999999
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHH----HHcc--hhHHHHHHHHHHHHHHH
Q 010416 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF----ASRG--LKYVSVLISFGAVAGLT 354 (511)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~i~~~~~~~ 354 (511)
++||+|||+|++||++..+..++.++|++..++.....|+++....++..+.+ +..+ .++...++.+..+++.+
T Consensus 223 ~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 302 (511)
T 4djk_A 223 HVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVL 302 (511)
T ss_dssp GGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHH
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876555544433 3445 57778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHhhhcCCCCCchHHHHHHHHHHHH-HHhhhc--------HHHHHHHHHHHHHHH
Q 010416 355 TTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGI-LAGLFN--------VRVLSHILSVGTLTG 425 (511)
Q Consensus 355 ~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~n~~~~~P~~a~~~~~~~~~~-~~~~~~--------~~~l~~~~~~~~~~~ 425 (511)
++.++.+++.+|++++|||||.+|++|+|+|| +++|+++++++.++..+ +..+.+ ++.+.++.++..++.
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~~-~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 381 (511)
T 4djk_A 303 AEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK-NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCA 381 (511)
T ss_dssp HHHHHHTTHHHHHTCHHHHGGGCSSSCCCCCS-SSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcccHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 49999999998544333 233333 688999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhhh
Q 010416 426 YSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLF 474 (511)
Q Consensus 426 ~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
|.+++++++++|+|+++.+|+++.+.+++....+..++++.+.+..+..
T Consensus 382 y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (511)
T 4djk_A 382 YFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVS 430 (511)
T ss_dssp HHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHee
Confidence 9999999999999988888876655556665666677777666665544
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.27 E-value=1.5e-08 Score=103.86 Aligned_cols=285 Identities=12% Similarity=0.026 Sum_probs=158.4
Q ss_pred CcccccChhHHHHHHhcccccchhhhchhhhhhhcCch---HHHHHHHHHHHHHHHHHHHHHHhhcCccccCc-ceehhH
Q 010416 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGG-AYLYAY 131 (511)
Q Consensus 56 ~l~r~l~~~~~~~l~i~~~ig~gi~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg-~y~~~~ 131 (511)
+.+|+.++++.+.+=++..+..+-+........ |-. ++++.+++.++........+.++.++ |- .....+
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~----Gl~~~v~~R 95 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW----GINFTVAAR 95 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH----CCCHHHHTT
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc----CCChhhhhH
Confidence 346778999999877777666555544433333 432 55555555555544444444444443 43 445777
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHH
Q 010416 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (511)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (511)
..||++.+.+......+..+...+......++.+..+++ +++ ..+. .+..+++.++...
T Consensus 96 ~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g----~~~~----------------~v~~~i~~~l~~~ 155 (501)
T 2jln_A 96 MPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG----FTNL----------------PLWIVIFGAIQVV 155 (501)
T ss_dssp TTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCH----------------HHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchH----------------HHHHHHHHHHHHH
Confidence 799999999988888888877777777777777766542 111 1111 2344556666777
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccceec--cCCCCCCC-CChHHHHHHHHHH-HHHhhhhhhhhhhhhhhc
Q 010416 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAP-NGFKEILTGATVV-FFAYVGFDAVANSAEESK 286 (511)
Q Consensus 211 l~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~~~G~e~~~~~~~E~k 286 (511)
+.+.|.|...+++.+...+.++..+.+.+..+...+. .+.....+ ....+++.++... .+...+.-..+.++.+.|
T Consensus 156 ~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~ 235 (501)
T 2jln_A 156 TTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECK 235 (501)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBC
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCC
Confidence 7889999999999999888777777666655543332 11111111 1122455544432 222244456778888888
Q ss_pred CCCCC-----------chHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHcchhHH-HHHHH-HHHHHHH
Q 010416 287 KPQRD-----------LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYV-SVLIS-FGAVAGL 353 (511)
Q Consensus 287 ~p~k~-----------~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-i~~~~~~ 353 (511)
++++. .-++..++..+...+..+........ ....+|...+.+...++.. ..+.. +..+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~ 310 (501)
T 2jln_A 236 VDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLAT 310 (501)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 86441 22333333333332222222222211 1223344444342323322 44455 5566666
Q ss_pred HHHHH-HHHHHHHHHHHHH
Q 010416 354 TTTLL-VGLYVQSRLYLGL 371 (511)
Q Consensus 354 ~~~~~-~~~~~~sR~l~~~ 371 (511)
+++.. ...++++--+..+
T Consensus 311 i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 311 WSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHh
Confidence 55555 3577777766665
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.46 E-value=5.8e-05 Score=77.86 Aligned_cols=284 Identities=11% Similarity=0.066 Sum_probs=134.4
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhch
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g~ 136 (511)
.|++++|....-.+++.+++..+.. ++..+..|-....+.|.. .+.....+..+...-++. + .-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~-~-~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEK-G-IYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHT-T-CCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHc-C-CccHHHHHHHHcCc
Confidence 5889999877777677676655554 555555432223333322 222223333444444443 2 56888999999999
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHhh
Q 010416 137 LTAFLVFAQLMLDYHI-GAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (511)
Q Consensus 137 ~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 215 (511)
+...+.+....+.+.. ..++.....+..++.+++ .|.+ ..+.+...+...+...-|
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------i~~~---------------~~i~i~~~i~~~Yt~~GG 152 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------IPLM---------------YSILGLALFALVYSIYGG 152 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------CCHH---------------HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHHhcc
Confidence 8888777766554443 334444445555665443 1222 111122222233333457
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccce----------------eccCCCCC----CC-----CChHHHHHHHHHHHH
Q 010416 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------------DVSNWSPF----AP-----NGFKEILTGATVVFF 270 (511)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~~~----~~-----~~~~~~~~~~~~~~~ 270 (511)
.|...+...+-..+.++..+++.+..+... +++.++.+ .+ .++...+.+......
T Consensus 153 l~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 232 (530)
T 3dh4_A 153 LSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANL 232 (530)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHH
Confidence 777766666555555544443333222111 11111111 11 112111212222233
Q ss_pred Hhhhhhh-hhhhhhhhcCCCCCchHHHHHHHHHHHHHHHH---HHHHHHhccc----------------ccCCCCCChHH
Q 010416 271 AYVGFDA-VANSAEESKKPQRDLPIGILGSLLICAALYVG---VSLVLTGMVP----------------YKFLDEDAPLS 330 (511)
Q Consensus 271 ~~~G~e~-~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~---~~~~~~~~~~----------------~~~~~~~~~~~ 330 (511)
.|.|.+. ..+=.-..||+ |+..|+..++.....+..++ ..++.....+ ++..+++..+.
T Consensus 233 ~~~g~~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p 311 (530)
T 3dh4_A 233 YYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYP 311 (530)
T ss_dssp HHTTTTCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHH
T ss_pred HHHcCCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHH
Confidence 4445432 22222335664 66778887776554333221 1122111111 11122344455
Q ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 331 DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL 369 (511)
Q Consensus 331 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~ 369 (511)
...+ ..++++.-++..+.+.+..++..+.+.+.+-.+.
T Consensus 312 ~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~~ 349 (530)
T 3dh4_A 312 WLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATIFT 349 (530)
T ss_dssp HHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5554 5666777777777777777777777777666543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.41 E-value=0.00047 Score=72.10 Aligned_cols=282 Identities=12% Similarity=0.075 Sum_probs=139.7
Q ss_pred ccccChhHHHHHHhcccccchhhhc-hhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcCccccCcceehhHHHhc
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~~-~~~~~~~~G~~-~~~~~ll~~~~~~~~~~~~ael~~~~p~~~Gg~y~~~~~~~g 135 (511)
.|++++|....-.+++.+++.-+.. ++.++.. |.. .++.|. ..+.....+..+...-++. + .-..++|.++.||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~-G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~-~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSI-GLAIASYEWM-SAITLIIVGKYFLPIFIEK-G-IYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHT-CGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-T-CCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHc-CHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-C-CCCcHHHHHHHcc
Confidence 5788888666555566666555544 5555554 432 333332 1222233344444444443 2 5678899999999
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccCCCccccCCCcccccCcchhhHHHHHHHHHHHHHHHh
Q 010416 136 ELTAFLVFAQLMLDYHI-GAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (511)
Q Consensus 136 ~~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (511)
+....+.+....+.+.. ..+......+..++..++ .|.| ..+.+...+...+...-
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------i~~~---------------~~i~i~~~i~~~Yt~~G 180 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------IPLM---------------YSILGLALFALVYSIYG 180 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ccHH---------------HHHHHHHHHHHHHHHhc
Confidence 98887777666554443 344455555666666443 1222 12222333334555556
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcccee----------------ccCCCCCCCCC--------hHHHHH-HHHHHH
Q 010416 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD----------------VSNWSPFAPNG--------FKEILT-GATVVF 269 (511)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~~--------~~~~~~-~~~~~~ 269 (511)
|.|...+...+=..+.++..+++.+..+...+ .+.++.+.+.+ +...+. +.....
T Consensus 181 Gl~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 260 (593)
T 2xq2_A 181 GLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVAN 260 (593)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHH
Confidence 88887776666665555554444333222111 11122111111 111111 122223
Q ss_pred HHhhhhhh-hhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHH---HHHHhc-cc--------------ccCC-CCCChH
Q 010416 270 FAYVGFDA-VANSAEESKKPQRDLPIGILGSLLICAALYVGVS---LVLTGM-VP--------------YKFL-DEDAPL 329 (511)
Q Consensus 270 ~~~~G~e~-~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~---~~~~~~-~~--------------~~~~-~~~~~~ 329 (511)
..+.|.+. ..+-.-+.||+ |+..|+..++.....++.+... ++.... .+ .++. +++..+
T Consensus 261 ~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 339 (593)
T 2xq2_A 261 LYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAY 339 (593)
T ss_dssp HHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHH
T ss_pred HHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHH
Confidence 34455542 34445567775 7788888877665444433211 111111 00 1122 223444
Q ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010416 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (511)
Q Consensus 330 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 368 (511)
.... ...++++.-++..+.+.+..++..+.+.+.+-.+
T Consensus 340 p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 340 PWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 6666777777777777777777777777666654
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=98.25 E-value=0.0027 Score=64.52 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhhcccee----cc-----CCCCCCCC--ChHHHHH
Q 010416 196 SINILAPILLALLTIVLCWGV-GESSVLNSCMTVVKVIIVIVVIFAGAFEVD----VS-----NWSPFAPN--GFKEILT 263 (511)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~-----~~~~~~~~--~~~~~~~ 263 (511)
...+.-++..++...+..+|+ |...|...++.....+.++++.+-++...+ .. .+.|..+. +...+..
T Consensus 167 ~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~ 246 (519)
T 2a65_A 167 FAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHH
Confidence 334444555566667777899 779999999988887777777766554333 10 11122111 1235788
Q ss_pred HHHHHHHHhh-hhhhhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHH
Q 010416 264 GATVVFFAYV-GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVG 309 (511)
Q Consensus 264 ~~~~~~~~~~-G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~ 309 (511)
++.-++|++. |+-....++.-.|+ +.|++|.-.........+-++
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 8999999985 88888888887776 678888777766665555444
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=90.72 E-value=15 Score=36.97 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=19.5
Q ss_pred ccccChhHHHHHHhcccccchhhh
Q 010416 58 LRRLGLFELVLIGVGASVGAGIFV 81 (511)
Q Consensus 58 ~r~l~~~~~~~l~i~~~ig~gi~~ 81 (511)
|.++|.++-+++.++.-+|.|+.+
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCcchHHHHHHHHHhhcchhee
Confidence 567888889999999888888653
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=78.73 E-value=56 Score=32.64 Aligned_cols=25 Identities=4% Similarity=0.100 Sum_probs=19.4
Q ss_pred cccccChhHHHHHHhcccccchhhh
Q 010416 57 LLRRLGLFELVLIGVGASVGAGIFV 81 (511)
Q Consensus 57 l~r~l~~~~~~~l~i~~~ig~gi~~ 81 (511)
-|-++|.++-+++.++.-+|.|+..
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhh
Confidence 4557888888888888888877544
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=51.91 E-value=12 Score=23.38 Aligned_cols=10 Identities=20% Similarity=0.076 Sum_probs=4.0
Q ss_pred HhhhcccccC
Q 010416 496 AMLCLRHVSY 505 (511)
Q Consensus 496 ~~~~~~~~~~ 505 (511)
|++++|++.+
T Consensus 31 ~~~~RRRr~~ 40 (44)
T 2l2t_A 31 AVYVRRKSIK 40 (44)
T ss_dssp HHHHHTTCSS
T ss_pred HHHhhhhhhh
Confidence 3344444433
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=50.69 E-value=13 Score=23.28 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=4.1
Q ss_pred HhhhcccccC
Q 010416 496 AMLCLRHVSY 505 (511)
Q Consensus 496 ~~~~~~~~~~ 505 (511)
|++++|++.+
T Consensus 32 ~~~~RRr~~~ 41 (44)
T 2ks1_B 32 GLFMRRRHIV 41 (44)
T ss_dssp HHHHHTTTCC
T ss_pred HHHhhhhHhh
Confidence 3344444433
No 12
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=26.95 E-value=4.1e+02 Score=25.96 Aligned_cols=41 Identities=7% Similarity=-0.208 Sum_probs=20.3
Q ss_pred HHhhcCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhhhh
Q 010416 435 ALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFY 475 (511)
Q Consensus 435 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
+.+.+.+...|-...++..+....+.++..+...+....+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 434 (511)
T 4djk_A 394 LKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPP 434 (511)
T ss_dssp HHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeCC
Confidence 34443333344444445655545555555555555554443
No 13
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.30 E-value=1.5e+02 Score=18.45 Aligned_cols=10 Identities=10% Similarity=0.289 Sum_probs=4.8
Q ss_pred HHHHhhcCCC
Q 010416 433 VIALRWKDRT 442 (511)
Q Consensus 433 ~l~~r~~~~~ 442 (511)
.+++|||+.+
T Consensus 32 ~~~~RRR~~~ 41 (44)
T 2jwa_A 32 GILIKRRQQK 41 (44)
T ss_dssp HHHHHHHCSC
T ss_pred Hhheehhhhh
Confidence 3445555444
Done!