BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010417
         (511 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
          Length = 292

 Score = 32.0 bits (71), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 10/63 (15%)

Query: 262 CCLPH---PDKE-ETGGEDAHFISDKQAIGVADGVGGWANH-GVNAGLYSRELMSNSVAA 316
            C+PH   P +E E  G D HF+S ++ +          NH  + AG Y+  L   SVA+
Sbjct: 127 SCVPHTTRPKREYEVDGRDYHFVSSREQME-----RDIQNHLFIEAGQYNDNLYGTSVAS 181

Query: 317 IQE 319
           ++E
Sbjct: 182 VRE 184


>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
 pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
          Length = 190

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 27/145 (18%)

Query: 293 GGWANHGVNAGLYSRELMSNSVAAIQEEPDGSI---DPARVLE--KAHSST------RAK 341
           G   + G+ A     E + NS+ +IQ+ P   I   D   +LE  KA++ +      R K
Sbjct: 1   GSSGSSGMTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYK 60

Query: 342 GSSTACIIALTDQGLR-----AINLGDSGFVVVRDGCTVFRSPVQQHDFNFTYQLEYGSN 396
            +    ++    +G       A+ LG  GFV VR    + R  + +     TY LEYG++
Sbjct: 61  NAGITKVVGTEARGFLFGAPVALGLG-VGFVPVRKPGKLPRETISE-----TYDLEYGTD 114

Query: 397 SDLPSSGQVFTIPVAPGDVIIAGTD 421
                  ++    + PGD ++   D
Sbjct: 115 QL-----EIHVDAIKPGDKVLVVDD 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,957,642
Number of Sequences: 62578
Number of extensions: 550273
Number of successful extensions: 1296
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1296
Number of HSP's gapped (non-prelim): 10
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)