BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010418
         (511 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HS0|A Chain A, T. Maritima Purl Complexed With Atp
 pdb|2HS3|A Chain A, T. Maritima Purl Complexed With Fgar
 pdb|2HS4|A Chain A, T. Maritima Purl Complexed With Fgar And Amppcp
          Length = 603

 Score = 29.3 bits (64), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 222 VTLMLFACIVWLKLVSYAHTNYDMRALANSADKGDASSSSVNVDCSYDVSFK 273
           V L  F+ ++W +   Y+HT   +R L  +  +G+A    VN+D  Y V+FK
Sbjct: 20  VELQAFS-VMWSEHCGYSHTKKYIRRLPKTGFEGNA--GVVNLDDYYSVAFK 68


>pdb|3D54|A Chain A, Stucture Of Purlqs From Thermotoga Maritima
 pdb|3D54|E Chain E, Stucture Of Purlqs From Thermotoga Maritima
 pdb|3D54|I Chain I, Stucture Of Purlqs From Thermotoga Maritima
          Length = 629

 Score = 29.3 bits (64), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 222 VTLMLFACIVWLKLVSYAHTNYDMRALANSADKGDASSSSVNVDCSYDVSFK 273
           V L  F+ ++W +   Y+HT   +R L  +  +G+A    VN+D  Y V+FK
Sbjct: 46  VELQAFS-VMWSEHCGYSHTKKYIRRLPKTGFEGNA--GVVNLDDYYSVAFK 94


>pdb|2HRU|A Chain A, T. Maritima Purl Complexed With Adp
 pdb|2HRY|A Chain A, T. Maritima Purl Complexed With Amppcp
          Length = 603

 Score = 29.3 bits (64), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 222 VTLMLFACIVWLKLVSYAHTNYDMRALANSADKGDASSSSVNVDCSYDVSFK 273
           V L  F+ ++W +   Y+HT   +R L  +  +G+A    VN+D  Y V+FK
Sbjct: 20  VELQAFS-VMWSEHCGYSHTKKYIRRLPKTGFEGNA--GVVNLDDYYSVAFK 68


>pdb|1VK3|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
           Synthase Ii (Tm1246) From Thermotoga Maritima At 2.15 A
           Resolution
          Length = 615

 Score = 28.9 bits (63), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 222 VTLMLFACIVWLKLVSYAHTNYDMRALANSADKGDASSSSVNVDCSYDVSFK 273
           V L  F+ + W +   Y+HT   +R L  +  +G+A    VN+D  Y V+FK
Sbjct: 32  VELQAFS-VXWSEHCGYSHTKKYIRRLPKTGFEGNA--GVVNLDDYYSVAFK 80


>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
           Rickettsia Prowazekii
 pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
           Rickettsia Prowazekii
          Length = 482

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 66  IARNGKMIGNGDNHAAGLDIKFAYRPSVPAHRRIKESP 103
           +A+ G  +G G N   G DIKFA + +    +  K +P
Sbjct: 246 LAQGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAP 283


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.141    0.464 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,507,842
Number of Sequences: 62578
Number of extensions: 518360
Number of successful extensions: 1204
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 5
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.4 bits)