Query 010418
Match_columns 511
No_of_seqs 203 out of 516
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 06:22:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qmy_A Protease, leader protea 16.1 56 0.0019 29.8 1.7 24 366-389 23-46 (167)
2 1rpq_W Peptide E131; receptor- 12.4 36 0.0012 21.7 -0.5 15 281-295 3-17 (26)
3 2lx0_A Membrane fusion protein 6.6 5.8E+02 0.02 16.9 3.6 27 158-184 5-31 (32)
4 3fwb_B Nuclear mRNA export pro 6.4 2.7E+02 0.0091 21.1 2.2 24 423-446 10-33 (55)
5 3lim_A Fragaceatoxin C; pore f 6.0 1.4E+02 0.0047 27.9 0.4 11 379-389 108-118 (178)
6 2zxe_B Na+,K+-ATPase beta subu 4.7 7.9E+02 0.027 24.5 5.1 25 386-411 90-114 (305)
7 3ouf_A Potassium channel prote 4.4 6.2E+02 0.021 20.3 3.4 27 271-297 32-60 (97)
8 1gwy_A Sticholysin II; cytolys 4.2 2.2E+02 0.0075 26.5 0.5 8 381-388 109-116 (175)
9 3fwc_B Nuclear mRNA export pro 3.6 5.1E+02 0.017 21.1 2.2 25 422-446 39-63 (85)
10 1jxc_A Putative trypsin inhibi 3.4 1.7E+02 0.0058 23.0 -0.8 10 279-288 27-36 (68)
No 1
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=16.07 E-value=56 Score=29.80 Aligned_cols=24 Identities=25% Similarity=0.685 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhccCcccccccccc
Q 010418 366 LWLNILAELLRFGDREFYKDWWNA 389 (511)
Q Consensus 366 ~~LN~~AEl~rFgDR~FY~DWWNs 389 (511)
||||.+-.|+|.-|-.|++-=.++
T Consensus 23 cWLNtilQLfryvdepfFd~~y~s 46 (167)
T 1qmy_A 23 AWLNAILQLFRYVEEPFFDWVYSS 46 (167)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHTC
T ss_pred hHHHHHHHHHHHcCccchhhccCC
Confidence 999999999999999998433333
No 2
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=12.44 E-value=36 Score=21.72 Aligned_cols=15 Identities=27% Similarity=0.786 Sum_probs=11.8
Q ss_pred ccceeeeccCCCCCc
Q 010418 281 APTLCYQTSYPRTAS 295 (511)
Q Consensus 281 aPTL~Yq~~YPRT~~ 295 (511)
+|-.||++.|---+.
T Consensus 3 cphfcyeldyelcpd 17 (26)
T 1rpq_W 3 CPHFCYELDYELCPD 17 (26)
T ss_dssp CCTHHHHSSSCCSCG
T ss_pred CCeeeeecCcccCCc
Confidence 788999999876554
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=6.60 E-value=5.8e+02 Score=16.87 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=17.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHHhh
Q 010418 158 DWPLLMCCLTLPLFPLSAFLVEKLAQR 184 (511)
Q Consensus 158 ~w~l~~~~l~l~~~~~~a~~iEk~~~~ 184 (511)
.|..+.....+..|..+.||+-|..++
T Consensus 5 iweviaglvalltflafgfwlfkylqk 31 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLFKYLQK 31 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466555555566677888888776654
No 4
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=6.41 E-value=2.7e+02 Score=21.14 Aligned_cols=24 Identities=13% Similarity=-0.038 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 010418 423 GAALLIAFTVSAIFHELCIAVPCH 446 (511)
Q Consensus 423 ~~A~l~vF~vSA~~HE~ii~v~~~ 446 (511)
....+.-=+.+|++||.+.-+.+-
T Consensus 10 iI~sLs~eLy~AFihE~lY~~~le 33 (55)
T 3fwb_B 10 FIDTMTRELYDAFLHERLYLIYMD 33 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566668999999988665443
No 5
>3lim_A Fragaceatoxin C; pore forming toxin, actinoporins; HET: LDA; 1.80A {Actinia fragacea} PDB: 3zwj_A 3zwg_A 1kd6_A 1iaz_A 1tzq_A
Probab=6.02 E-value=1.4e+02 Score=27.92 Aligned_cols=11 Identities=45% Similarity=1.507 Sum_probs=8.3
Q ss_pred Ccccccccccc
Q 010418 379 DREFYKDWWNA 389 (511)
Q Consensus 379 DR~FY~DWWNs 389 (511)
|..||+.|||-
T Consensus 108 DyNlYsNW~~V 118 (178)
T 3lim_A 108 DYNWYSNWWNV 118 (178)
T ss_dssp CTTTCCCEEEE
T ss_pred chhhhhheeEE
Confidence 77788888874
No 6
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=4.72 E-value=7.9e+02 Score=24.49 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.0
Q ss_pred ccccccHHHHHHhccccHHHHhhhhc
Q 010418 386 WWNAKTVEEYWRMWNMPVHKWMVRHI 411 (511)
Q Consensus 386 WWNsts~~efwR~WN~pVH~wL~rhV 411 (511)
|||+++-++| ..|=.-.++||..|-
T Consensus 90 ~f~~~~~~s~-~~yv~~l~~FL~~Y~ 114 (305)
T 2zxe_B 90 SFSISNPKSY-ESFVKSMHKLMDLYN 114 (305)
T ss_dssp EECTTCGGGT-HHHHHHHHHHHGGGC
T ss_pred EEeCCChhhH-HHHHHHHHHHHHHhc
Confidence 8998776664 778888999998865
No 7
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=4.37 E-value=6.2e+02 Score=20.28 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=20.4
Q ss_pred chhhhhhhhh--ccceeeeccCCCCCccc
Q 010418 271 SFKSLVYFMV--APTLCYQTSYPRTASVR 297 (511)
Q Consensus 271 tl~n~~yFl~--aPTL~Yq~~YPRT~~IR 297 (511)
++-+-+||.+ ..|.=|-|-+|+|+.=|
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr 60 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGK 60 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHH
Confidence 5667777765 67889999999986433
No 8
>1gwy_A Sticholysin II; cytolysin, pore-forming toxin, hemolysis, cnidocyst; 1.71A {Stoichactis helianthus} SCOP: b.97.1.1 PDB: 1o71_A 1o72_A* 2ks3_A 2l38_A 2l2b_A 2ks4_A
Probab=4.16 E-value=2.2e+02 Score=26.48 Aligned_cols=8 Identities=38% Similarity=1.880 Sum_probs=3.6
Q ss_pred cccccccc
Q 010418 381 EFYKDWWN 388 (511)
Q Consensus 381 ~FY~DWWN 388 (511)
.||..|||
T Consensus 109 NlYsNW~~ 116 (175)
T 1gwy_A 109 NWYSNWWD 116 (175)
T ss_dssp SSCCCEEE
T ss_pred cchhheeE
Confidence 44444444
No 9
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=3.61 E-value=5.1e+02 Score=21.14 Aligned_cols=25 Identities=12% Similarity=-0.030 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh
Q 010418 422 KGAALLIAFTVSAIFHELCIAVPCH 446 (511)
Q Consensus 422 k~~A~l~vF~vSA~~HE~ii~v~~~ 446 (511)
+....+.-=+.+|++||-+.-+.+-
T Consensus 39 ~iI~sLs~eLy~AFihE~lY~~~le 63 (85)
T 3fwc_B 39 DFIDTMTRELYDAFLHERLYLIYMD 63 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566677778999999988665443
No 10
>1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5
Probab=3.45 E-value=1.7e+02 Score=22.99 Aligned_cols=10 Identities=40% Similarity=1.035 Sum_probs=7.7
Q ss_pred hhccceeeec
Q 010418 279 MVAPTLCYQT 288 (511)
Q Consensus 279 l~aPTL~Yq~ 288 (511)
-+.||+|||-
T Consensus 27 rifPt~Cy~~ 36 (68)
T 1jxc_A 27 RIFPTICYTR 36 (68)
T ss_dssp TCCCCHHHHH
T ss_pred hhhhHHHHHH
Confidence 3579999974
Done!