BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010421
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 50/238 (21%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP--------VVFEASDSIGGIWK-----SCSYNSTKL 51
++IAI+GAG SG+A ++ + V FE GG W N +
Sbjct: 8 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPV 67
Query: 52 QSHRSDY----------EFTDFPWPNRDDPGFPSY--TEIL-DYLESYAKHFDVFKCVRF 98
S Y EF D+ + SY E+L DY++ + V K +RF
Sbjct: 68 HSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRF 127
Query: 99 NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158
N+ V V F +T + V VQ H +++I F+++V CTG +
Sbjct: 128 NTAVRHVEFNEDSQT--------------FTVTVQDHTTDTIYSAAFDYVVCCTGHFS-T 172
Query: 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216
P +P F +G E F G++LH+ D+ ++A KDK V +VG SA D+ +C
Sbjct: 173 PYVPEF---EGFEKFGGRILHAHDF----RDALE--FKDKTVLLVGSSYSAEDIGSQC 221
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 352 FEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV 411
F D + + D +ILCTGY FL + + + + L LY+G + P ++
Sbjct: 262 FADGSSEKVDAIILCTGY---IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYI 318
Query: 412 GYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKM 446
G + + + + ++ + +I + LPS E+M
Sbjct: 319 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEM 353
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 50/238 (21%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP--------VVFEASDSIGGIWK-----SCSYNSTKL 51
++IAI+GAG SG+A ++ + V FE GG W N +
Sbjct: 8 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPV 67
Query: 52 QSHRSDY----------EFTDFPWPNRDDPGFPSY--TEIL-DYLESYAKHFDVFKCVRF 98
S Y EF D+ + SY E+L DY++ + V K +RF
Sbjct: 68 HSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRF 127
Query: 99 NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158
N+ V V F +T + V VQ H +++I F+++V CTG +
Sbjct: 128 NTAVRHVEFNEDSQT--------------FTVTVQDHTTDTIYSAAFDYVVCCTGHFS-T 172
Query: 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216
P +P F +G E F G++LH+ D+ ++A KDK V +VG SA D+ +C
Sbjct: 173 PYVPEF---EGFEKFGGRILHAHDF----RDALE--FKDKTVLLVGSSYSAEDIGSQC 221
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 352 FEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV 411
F D + + D +ILCTGY FL + + + + L LY+G + P ++
Sbjct: 262 FADGSSEKVDAIILCTGY---IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYI 318
Query: 412 GYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKM 446
G + + + + ++ + +I + LPS E+M
Sbjct: 319 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEM 353
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 50/238 (21%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP--------VVFEASDSIGGIWK-----SCSYNSTKL 51
++IAI+GAG SG+A ++ + V FE GG W N +
Sbjct: 8 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPV 67
Query: 52 QSHRSDY----------EFTDFPWPNRDDPGFPSY--TEIL-DYLESYAKHFDVFKCVRF 98
S Y EF D+ + SY E+L DY++ + V K +RF
Sbjct: 68 HSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRF 127
Query: 99 NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158
N+ V V F +T + V VQ H +++I F+++V CTG +
Sbjct: 128 NTAVRHVEFNEDSQT--------------FTVTVQDHTTDTIYSAAFDYVVCCTGHFS-T 172
Query: 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216
P +P F +G E F G++LH+ D+ ++A KDK V +VG SA D+ +C
Sbjct: 173 PYVPEF---EGFEKFGGRILHAHDF----RDALE--FKDKTVLLVGSSYSAEDIGSQC 221
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 352 FEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV 411
F D + + D +ILCTGY FL + + + + L LY+G + P ++
Sbjct: 262 FADGSSEKVDAIILCTGY---IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYI 318
Query: 412 GYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKM 446
G + + + + ++ + +I + LPS E+M
Sbjct: 319 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEM 353
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 50/238 (21%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP--------VVFEASDSIGGIWK-----SCSYNSTKL 51
++IAI+GAG SG+A ++ + V FE GG W N +
Sbjct: 8 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPV 67
Query: 52 QSHRSDY----------EFTDFPWPNRDDPGFPSY--TEIL-DYLESYAKHFDVFKCVRF 98
S Y EF D+ + SY E+L DY++ + V K +RF
Sbjct: 68 HSSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRF 127
Query: 99 NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158
N+ V V F +T + V VQ H +++I F+++V CTG +
Sbjct: 128 NTAVRHVEFNEDSQT--------------FTVTVQDHTTDTIYSAAFDYVVCCTGHFS-T 172
Query: 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216
P +P F +G E F G++LH+ D+ ++A KDK V +VG SA D+ +C
Sbjct: 173 PYVPEF---EGFEKFGGRILHAHDF----RDALE--FKDKTVLLVGSSYSAEDIGSQC 221
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 352 FEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV 411
F D + + D +ILCTGY FL + + + + L LY+G + P ++
Sbjct: 262 FADGSSEKVDAIILCTGY---IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYI 318
Query: 412 GYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKM 446
G + + + + ++ + +I + LPS E+M
Sbjct: 319 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEM 353
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 50/238 (21%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP--------VVFEASDSIGGIWK-----SCSYNSTKL 51
++IAI+GAG SG+A ++ + V FE GG W N +
Sbjct: 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPV 62
Query: 52 QSHRSDY----------EFTDFPWPNRDDPGFPSY--TEIL-DYLESYAKHFDVFKCVRF 98
S Y EF D+ + SY E+L DY++ + V K +RF
Sbjct: 63 HSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRF 122
Query: 99 NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158
N+ V V F +T + V VQ H +++I F+++V CTG +
Sbjct: 123 NTAVRHVEFNEDSQT--------------FTVTVQDHTTDTIYSEEFDYVVCCTGHFS-T 167
Query: 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216
P +P F +G E F G++LH+ D+ ++A KDK V +VG SA D+ +C
Sbjct: 168 PYVPEF---EGFEKFGGRILHAHDF----RDALE--FKDKTVLLVGSSSSAEDIGSQC 216
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 352 FEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV 411
F D + + D +ILCTGY FL + + + + L LY+G + P ++
Sbjct: 257 FADGSSEKVDAIILCTGY---IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYI 313
Query: 412 GYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKM 446
G + + + + ++ + +I + LPS E+M
Sbjct: 314 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEM 348
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 50/238 (21%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP--------VVFEASDSIGGIWK-----SCSYNSTKL 51
++IAI+GAG SG+A ++ + V FE GG W N +
Sbjct: 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPV 62
Query: 52 QSHRSDY----------EFTDFPWPNRDDPGFPSY--TEIL-DYLESYAKHFDVFKCVRF 98
S Y EF D+ + SY E+L DY++ + V K +RF
Sbjct: 63 HSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRF 122
Query: 99 NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158
N+ V V F +T + V VQ H +++I F+++V CTG +
Sbjct: 123 NTAVRHVEFNEDSQT--------------FTVTVQDHTTDTIYSEEFDYVVCCTGHFS-T 167
Query: 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216
P +P F +G E F G++LH+ D+ ++A KDK V +VG SA D+ +C
Sbjct: 168 PYVPEF---EGFEKFGGRILHAHDF----RDALE--FKDKTVLLVGSSYSAEDIGSQC 216
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 352 FEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV 411
F D + + D +ILCTGY FL + + + + L LY+G + P ++
Sbjct: 257 FADGSSEKVDAIILCTGY---IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYI 313
Query: 412 GYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKM 446
G + + + + ++ + +I + LPS E+M
Sbjct: 314 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEM 348
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 50/238 (21%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP--------VVFEASDSIGGIWK---SCSYNSTKLQS 53
++IAI+GAG SG A ++ + V FE GG W +
Sbjct: 3 TRIAILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPV 62
Query: 54 HRSDY------------EFTDFPWPNRDDPGFPSY--TEIL-DYLESYAKHFDVFKCVRF 98
H S Y EF D+ + SY E+L DY++ + V K +RF
Sbjct: 63 HSSXYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRF 122
Query: 99 NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158
N+ V V F +T + V VQ H +++I F+++V CTG +
Sbjct: 123 NTAVRHVEFNEDSQT--------------FTVTVQDHTTDTIYSEEFDYVVCCTGHFS-T 167
Query: 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216
P +P F +G E F G++LH+ D+ ++A KDK V +VG SA D+ +C
Sbjct: 168 PYVPEF---EGFEKFGGRILHAHDF----RDALE--FKDKTVLLVGSSYSAEDIGSQC 216
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 352 FEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV 411
F D + + D +ILCTGY FL + + + + L LY+G + P ++
Sbjct: 257 FADGSSEKVDAIILCTGY---IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYI 313
Query: 412 GYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEK 445
G + + + + ++ + +I + LPS E+
Sbjct: 314 GXQDQWYSFNXFDAQAWYARDVIXGRLPLPSKEE 347
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 46/243 (18%)
Query: 7 IAIIGAGVSGLAAVKQLRHHNPVV--FEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
+ ++GAG++GL A+ + R V FEA+ +GG+W Y + DY ++ P
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP 83
Query: 65 -------WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG 117
W + + + EIL YLE A FD+ + +RF+++V
Sbjct: 84 ELEQEWNWSEK----YATQPEILAYLEHVADRFDLRRDIRFDTRVTSA------------ 127
Query: 118 GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQV 177
+L W V + S + FLVV G + PAF G + F G +
Sbjct: 128 --VLDEEGLRWTVRTDRGDEVSAR-----FLVVAAGPLSNAN-TPAF---DGLDRFTGDI 176
Query: 178 LHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237
+H+ + + K+V V+G S I AE + + + R+ ++
Sbjct: 177 VHTARWPHDGVD-----FTGKRVGVIGTGSSGIQSIPIIAE-----QAEQLFVFQRSANY 226
Query: 238 TVP 240
++P
Sbjct: 227 SIP 229
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 46/243 (18%)
Query: 7 IAIIGAGVSGLAAVKQLRHHNPVV--FEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
+ ++GAG++GL A+ + R V FEA+ +GG+W Y + DY ++ P
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP 83
Query: 65 -------WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG 117
W + + + EIL YLE A FD+ + +RF+++V
Sbjct: 84 ELEQEWNWSEK----YATQPEILAYLEHVADRFDLRRDIRFDTRVTSA------------ 127
Query: 118 GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQV 177
+L W V + S + FLVV G + PAF G + F G +
Sbjct: 128 --VLDEEGLRWTVRTDRGDEVSAR-----FLVVAAGPLSNAN-TPAF---DGLDRFTGDI 176
Query: 178 LHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237
+H+ + + K+V V+G S I AE + + + R+ ++
Sbjct: 177 VHTARWPHDGVD-----FTGKRVGVIGTGSSGIQSIPIIAE-----QAEQLFVFQRSANY 226
Query: 238 TVP 240
++P
Sbjct: 227 SIP 229
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 46/243 (18%)
Query: 7 IAIIGAGVSGLAAVKQLRHHNPVV--FEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
+ ++GAG++GL A+ + R V FEA+ +GG+W Y + DY ++ P
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP 83
Query: 65 -------WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG 117
W + + + EIL YLE A FD+ + +RF+++V
Sbjct: 84 ELEQEWNWSEK----YATQPEILAYLEHVADRFDLRRDIRFDTRVTSA------------ 127
Query: 118 GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQV 177
+L W V + S + FLVV G + PAF G + F G +
Sbjct: 128 --VLDEEGLRWTVRTDRGDEVSAR-----FLVVAAGPLSNAN-TPAF---DGLDRFTGDI 176
Query: 178 LHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237
+H+ + + K+V V+G S I AE + + + R+ ++
Sbjct: 177 VHTARWPHDGVD-----FTGKRVGVIGTGSSGIQSIPIIAE-----QAEQLFVFQRSANY 226
Query: 238 TVP 240
++P
Sbjct: 227 SIP 229
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 9 IIGAGVSGLAAVKQLRHH---NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT---D 62
+IGAG G+ AV +L H V F+ +D GG W Y + Y F+ D
Sbjct: 46 VIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRD 105
Query: 63 FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLP 122
+ + + EIL+YLE FD+ + +F ++V T +L D
Sbjct: 106 LLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEV-----TSALYLDDEN----- 155
Query: 123 AGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSID 182
+WEV ++ + Y +++V G + FPN G + FEG+ +H+
Sbjct: 156 ----LWEV-----TTDHGEVYRAKYVVNAVGLLSAI----NFPNLPGLDTFEGETIHTAA 202
Query: 183 YCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240
+ + + L ++V V+G + + A PE + T+ VRT ++VP
Sbjct: 203 WPE------GKSLAGRRVGVIGTGSTGQQVITSLA-----PEVEHLTVFVRTPQYSVP 249
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 9 IIGAGVSGLAAVKQLRHH---NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT---D 62
+IGAG G+ AV +L H V F+ +D GG W Y + Y F+ D
Sbjct: 13 VIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRD 72
Query: 63 FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLP 122
+ + + EIL+YLE FD+ + +F ++V T +L D
Sbjct: 73 LLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEV-----TSALYLDDEN----- 122
Query: 123 AGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSID 182
+WEV ++ + Y +++V G + FPN G + FEG+ +H+
Sbjct: 123 ----LWEV-----TTDHGEVYRAKYVVNAVGLLSAI----NFPNLPGLDTFEGETIHTAA 169
Query: 183 YCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240
+ + + L ++V V+G + + A PE + T+ VRT ++VP
Sbjct: 170 WPE------GKSLAGRRVGVIGTGSTGQQVITSLA-----PEVEHLTVFVRTPQYSVP 216
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 51/272 (18%)
Query: 7 IAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGGIW-------KSCSYNSTKLQSHRSD 57
+ ++GAG SGL A+ +LR + V E + +GG+W C+ S + S+
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCAIESIEYCYSFSE 78
Query: 58 YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG 117
++ W R + S EIL Y+ A FD+ + F++ V F + T
Sbjct: 79 EVLQEWNWTER----YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNT---- 130
Query: 118 GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQV 177
W V ++N R +L++ +G+ +P PN G + F G +
Sbjct: 131 ----------WTV-----DTNHGDRIRARYLIMASGQLS----VPQLPNFPGLKDFAGNL 171
Query: 178 LHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV--RTT 235
H+ ++ + + Q +V V+G S I ++ + A+ Q + V RT
Sbjct: 172 YHTGNWPHEPVDFSGQ-----RVGVIGTGSSGIQVSPQIAK-------QAAELFVFQRTP 219
Query: 236 HWTVPHYRIWGLPFFMF-YSTRFSQFLHGSPN 266
H+ VP P F+ R+++F S N
Sbjct: 220 HFAVPARNAPLDPEFLADLKKRYAEFREESRN 251
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 111/272 (40%), Gaps = 51/272 (18%)
Query: 7 IAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGGIW-------KSCSYNSTKLQSHRSD 57
+ ++GAG SGL A+ +LR + V E + +GG+W C S + S+
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSE 78
Query: 58 YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG 117
++ W R + S EIL Y+ A FD+ + F++ V F + T
Sbjct: 79 EVLQEWNWTER----YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNT---- 130
Query: 118 GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQV 177
W V ++N R +L++ +G+ +P PN G + F G +
Sbjct: 131 ----------WTV-----DTNHGDRIRARYLIMASGQLS----VPQLPNFPGLKDFAGNL 171
Query: 178 LHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV--RTT 235
H+ ++ + + Q +V V+G S I ++ + A+ Q + V RT
Sbjct: 172 YHTGNWPHEPVDFSGQ-----RVGVIGTGSSGIQVSPQIAK-------QAAELFVFQRTP 219
Query: 236 HWTVPHYRIWGLPFFMF-YSTRFSQFLHGSPN 266
H+ VP P F+ R+++F S N
Sbjct: 220 HFAVPARNAPLDPEFLADLKKRYAEFREESRN 251
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 111/272 (40%), Gaps = 51/272 (18%)
Query: 7 IAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGGIW-------KSCSYNSTKLQSHRSD 57
+ ++GAG SGL A+ +LR + V E + +GG+W C S + S+
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSE 78
Query: 58 YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG 117
++ W R + S EIL Y+ A FD+ + F++ V F + T
Sbjct: 79 EVLQEWNWTER----YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNT---- 130
Query: 118 GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQV 177
W V ++N R +L++ +G+ +P PN G + F G +
Sbjct: 131 ----------WTV-----DTNHGDRIRARYLIMASGQLS----VPQLPNFPGLKDFAGNL 171
Query: 178 LHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV--RTT 235
H+ ++ + + Q +V V+G S I ++ + A+ Q + V RT
Sbjct: 172 YHTGNWPHEPVDFSGQ-----RVGVIGTGSSGIQVSPQIAK-------QAAELFVFQRTP 219
Query: 236 HWTVPHYRIWGLPFFMF-YSTRFSQFLHGSPN 266
H+ VP P F+ R+++F S N
Sbjct: 220 HFAVPARNAPLDPEFLADLKKRYAEFREESRN 251
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 111/272 (40%), Gaps = 51/272 (18%)
Query: 7 IAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGGIW-------KSCSYNSTKLQSHRSD 57
+ ++GAG SGL A+ +LR + V E + +GG+W C S + S+
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSE 78
Query: 58 YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG 117
++ W R + S EIL Y+ A FD+ + F++ V F + T
Sbjct: 79 EVLQEWNWTER----YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNT---- 130
Query: 118 GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQV 177
W V ++N R +L++ +G+ +P PN G + F G +
Sbjct: 131 ----------WTV-----DTNHGDRIRARYLIMASGQLS----VPQLPNFPGLKDFAGNL 171
Query: 178 LHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV--RTT 235
H+ ++ + + Q +V V+G S I ++ + A+ Q + V RT
Sbjct: 172 YHTGNWPHEPVDFSGQ-----RVGVIGTGSSGIQVSPQIAK-------QAAELFVFQRTP 219
Query: 236 HWTVPHYRIWGLPFFMF-YSTRFSQFLHGSPN 266
H+ VP P F+ R+++F S N
Sbjct: 220 HFAVPARNAPLDPEFLADLKKRYAEFREESRN 251
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 94/260 (36%), Gaps = 61/260 (23%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRS 56
+ KIAIIGAG SGL K L +FE S GG+W S S KL +
Sbjct: 5 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPST 64
Query: 57 DYEFTDFP------WPNRDDP--------------------------GFPSYTEILDYLE 84
+ T P P P FP I +Y
Sbjct: 65 NPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQR 124
Query: 85 SYAKHFDVFKCVRFNSKVVEV-RFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY 143
YA+ F ++ + V+++ + GS T G AG P I +
Sbjct: 125 IYAQPLLPF--IKLATDVLDIEKKDGSWVVTYKGTK---AGSP-------------ISKD 166
Query: 144 GFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVV 203
F+ + +C G Y +P PN KG + + V S+ + L +E +L + V VV
Sbjct: 167 IFDAVSICNGHYE----VPYIPNIKGLDEYAKAVPGSVLHSSLFREP--ELFVGESVLVV 220
Query: 204 GFKKSAIDLAKECAESNQGP 223
G SA DL + + P
Sbjct: 221 GGASSANDLVRHLTPVAKHP 240
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 337 FKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAF--LPEPFQSLLEHPSGLL 394
F ++ + KGG + D VI CTGY + L P L++ S +
Sbjct: 265 FDPTTREIYLKGGKVLSN-----IDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVH 319
Query: 395 PLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLE 448
+Y+ + P +AFVG V T++ ++ +L+R+ + KLPS E+ L+
Sbjct: 320 NVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLK 373
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 94/260 (36%), Gaps = 61/260 (23%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRS 56
+ KIAIIGAG SGL K L +FE S GG+W S S KL +
Sbjct: 3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPST 62
Query: 57 DYEFTDFP------WPNRDDP--------------------------GFPSYTEILDYLE 84
+ T P P P FP I +Y
Sbjct: 63 NPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQR 122
Query: 85 SYAKHFDVFKCVRFNSKVVEV-RFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY 143
YA+ F ++ + V+++ + GS T G AG P I +
Sbjct: 123 IYAQPLLPF--IKLATDVLDIEKKDGSWVVTYKGTK---AGSP-------------ISKD 164
Query: 144 GFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVV 203
F+ + +C G Y +P PN KG + + V S+ + L +E +L + V VV
Sbjct: 165 IFDAVSICNGHYE----VPYIPNIKGLDEYAKAVPGSVLHSSLFREP--ELFVGESVLVV 218
Query: 204 GFKKSAIDLAKECAESNQGP 223
G SA DL + + P
Sbjct: 219 GGASSANDLVRHLTPVAKHP 238
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 337 FKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAF--LPEPFQSLLEHPSGLL 394
F ++ + KGG + D VI CTGY + L P L++ S +
Sbjct: 263 FDPTTREIYLKGGKVLSN-----IDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVH 317
Query: 395 PLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLE 448
+Y+ + P +AFVG V T++ ++ +L+R+ + KLPS E+ L+
Sbjct: 318 NVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLK 371
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 6 KIAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGGIWKSCSYN 47
++A+IGAGVSGLAA +L+ H N VFEA GG +S S +
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD 58
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 193
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 193
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 145
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
+ +IG G+SGLAA K L + N +V EA D +GG
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGG 58
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
+AI+GAG+SGLAA LR + V EA D +GG
Sbjct: 8 VAIVGAGISGLAAATALRKAGLSVAVIEARDRVGG 42
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNPV----VFEASDSIGGIWKSCS 45
K+ IIGAG++GL A L H N + V EA D +GG ++ +
Sbjct: 10 KVIIIGAGIAGLKAASTL-HQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNPV----VFEASDSIGGIWKSCS 45
K+ IIGAG++GL A L H N + V EA D +GG ++ +
Sbjct: 10 KVIIIGAGIAGLKAASTL-HQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNPV----VFEASDSIGGIWKSCS 45
K+ IIGAG++GL A L H N + V EA D +GG ++ +
Sbjct: 10 KVIIIGAGIAGLKAASTL-HQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNPV----VFEASDSIGGIWKSCS 45
K+ IIGAG++GL A L H N + V EA D +GG ++ +
Sbjct: 10 KVIIIGAGIAGLKAASTL-HQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNPV----VFEASDSIGGIWKSCS 45
K+ IIGAG++GL A L H N + V EA D +GG ++ +
Sbjct: 10 KVIIIGAGIAGLKAASTL-HQNGIQDCLVLEARDRVGGRLQTVT 52
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 2 ANYSKIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGGIWKS 43
+N ++ I+GAG+SGL+A L + H V EAS+ GG K+
Sbjct: 44 SNPKRVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKT 87
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
+AI+GAG SGLAA LR + V EA D +GG
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
+AI+GAG SGLAA LR + V EA D +GG
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
+AI+GAG SGLAA LR + V EA D +GG
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 6 KIAIIGAGVSGLAAVKQLRHH---NPVVFEASDSIGG 39
++ ++GAG+SG++A K+L + ++ EA+D IGG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 6 KIAIIGAGVSGLAAVKQLRHH---NPVVFEASDSIGG 39
++ ++GAG+SG++A K+L + ++ EA+D IGG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
+ +IG G+SGL+A K L + + +V EA D +GG
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG 39
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
+ +IG G+SGL+A K L + + +V EA D +GG
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG 39
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
+ +IG G+SGL+A K L + + +V EA D +GG
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG 50
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 12/60 (20%)
Query: 2 ANYSKIAIIGAGVSGLAAVKQLR--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYE 59
+N + ++GAG+SGL+A L H V EAS+ GG +++++R+D E
Sbjct: 31 SNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGG----------RVRTYRNDKE 80
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 1 MANYSK-IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
M N + + I+GAG SGL A ++L+ + V EA D +GG
Sbjct: 3 MQNLDRDVVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGG 44
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 6 KIAIIGAGVSGLAA---VKQLRHHNPVVFEASDSIGGIWKS 43
KI IIGAG +GL A + +L + N ++E +D+ GG+ +S
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS 51
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 369 YDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGT 400
YD +KL A L +PF LE PS L L RGT
Sbjct: 50 YDAIRKLLAVLDDPFTRFLE-PSRLAALRRGT 80
>pdb|2QF4|A Chain A, High Resolution Structure Of The Major Periplasmic Domain
From The Cell Shape-determining Filament Mrec
(orthorhombic Form)
pdb|2QF4|B Chain B, High Resolution Structure Of The Major Periplasmic Domain
From The Cell Shape-determining Filament Mrec
(orthorhombic Form)
pdb|2QF5|A Chain A, High Resolution Structure Of The Major Periplasmic Domain
From The Cell Shape-determining Filament Mrec
(monoclinic Form)
Length = 172
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN 136
T I + Y K DV K + NS G TT GN A PV EV TH+
Sbjct: 82 TTIYGIIIGYDKENDVLKISQLNSN--SDISAGDKVTTGGLGNFNVADIPVGEVVATTHS 139
Query: 137 SNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNK 168
++ + R E V + +V +I N+K
Sbjct: 140 TDYLTR---EVTVKLSADTHNVDVIELVGNSK 168
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Query: 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYE 59
+N + ++GAG+SGL+A L H V EAS+ GG ++++HR+ E
Sbjct: 31 SNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGG----------RVRTHRNSKE 80
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGG 39
+A++G G+SGLA LR + V+ E+S +GG
Sbjct: 19 VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG 53
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39
+++ ++GAG SGL A + L R ++ V+ EA +GG
Sbjct: 392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGG 428
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39
+N + I+GAG++GL+A L H V EAS+ GG
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,734,771
Number of Sequences: 62578
Number of extensions: 659405
Number of successful extensions: 1546
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1467
Number of HSP's gapped (non-prelim): 88
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)