Query 010421
Match_columns 511
No_of_seqs 330 out of 3450
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 00:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 8.1E-77 1.8E-81 612.3 23.4 449 4-508 1-473 (531)
2 PLN02172 flavin-containing mon 100.0 1.6E-58 3.6E-63 471.0 36.1 366 2-490 8-405 (461)
3 KOG1399 Flavin-containing mono 100.0 1.4E-50 3.1E-55 404.0 27.4 388 2-509 4-407 (448)
4 COG2072 TrkA Predicted flavopr 100.0 2.3E-43 5E-48 358.5 31.0 388 2-436 6-412 (443)
5 PF13738 Pyr_redox_3: Pyridine 100.0 1.5E-30 3.2E-35 239.9 15.3 190 8-238 1-203 (203)
6 TIGR01292 TRX_reduct thioredox 100.0 2.3E-28 5.1E-33 239.3 27.6 282 5-435 1-297 (300)
7 PRK10262 thioredoxin reductase 100.0 2.3E-26 5E-31 227.0 26.6 269 2-416 4-290 (321)
8 PRK13512 coenzyme A disulfide 99.9 4.6E-26 9.9E-31 233.7 22.4 293 5-437 2-312 (438)
9 COG1252 Ndh NADH dehydrogenase 99.9 1.8E-26 3.9E-31 226.2 18.2 301 3-440 2-333 (405)
10 PRK15317 alkyl hydroperoxide r 99.9 1.6E-25 3.4E-30 234.2 26.5 279 4-432 211-505 (517)
11 PRK06116 glutathione reductase 99.9 1.9E-25 4.1E-30 230.6 25.9 302 1-437 1-328 (450)
12 PRK05249 soluble pyridine nucl 99.9 4.2E-25 9E-30 229.0 27.5 307 1-437 1-335 (461)
13 TIGR01421 gluta_reduc_1 glutat 99.9 2.5E-25 5.3E-30 228.8 25.4 300 3-436 1-327 (450)
14 PF13434 K_oxygenase: L-lysine 99.9 9.9E-26 2.1E-30 221.4 20.0 229 4-266 2-253 (341)
15 COG1249 Lpd Pyruvate/2-oxoglut 99.9 8E-26 1.7E-30 227.5 19.4 307 1-436 1-334 (454)
16 PRK06416 dihydrolipoamide dehy 99.9 8.9E-25 1.9E-29 226.5 26.1 305 3-437 3-334 (462)
17 PLN02507 glutathione reductase 99.9 5.4E-25 1.2E-29 228.4 24.4 306 4-437 25-363 (499)
18 TIGR01424 gluta_reduc_2 glutat 99.9 1.1E-24 2.5E-29 224.1 26.2 301 4-437 2-326 (446)
19 PTZ00318 NADH dehydrogenase-li 99.9 4E-25 8.7E-30 225.8 22.2 300 3-438 9-347 (424)
20 COG0492 TrxB Thioredoxin reduc 99.9 2.2E-24 4.7E-29 207.1 25.4 262 3-416 2-276 (305)
21 TIGR03143 AhpF_homolog putativ 99.9 2E-24 4.3E-29 227.3 26.3 284 1-434 1-304 (555)
22 PRK04965 NADH:flavorubredoxin 99.9 6.2E-25 1.3E-29 221.6 21.5 286 5-438 3-303 (377)
23 TIGR03140 AhpF alkyl hydropero 99.9 1.5E-24 3.2E-29 226.6 24.5 281 4-434 212-508 (515)
24 PRK06370 mercuric reductase; V 99.9 2.1E-24 4.6E-29 223.4 25.5 305 1-437 2-334 (463)
25 PRK08010 pyridine nucleotide-d 99.9 2.5E-24 5.4E-29 221.7 25.6 303 2-437 1-317 (441)
26 PRK09564 coenzyme A disulfide 99.9 1.9E-24 4.2E-29 223.1 24.2 296 6-437 2-317 (444)
27 PRK14694 putative mercuric red 99.9 7.1E-24 1.5E-28 219.6 27.6 304 3-437 5-335 (468)
28 PTZ00052 thioredoxin reductase 99.9 1.3E-24 2.9E-29 225.7 21.5 316 1-437 2-341 (499)
29 PRK07818 dihydrolipoamide dehy 99.9 6.4E-24 1.4E-28 219.9 26.3 317 1-437 1-336 (466)
30 PRK07251 pyridine nucleotide-d 99.9 8.6E-24 1.9E-28 217.5 27.0 296 2-437 1-316 (438)
31 PRK06467 dihydrolipoamide dehy 99.9 9.3E-24 2E-28 218.4 26.7 308 1-437 1-337 (471)
32 PRK07846 mycothione reductase; 99.9 1.2E-23 2.6E-28 216.2 24.6 310 5-437 2-325 (451)
33 PRK09853 putative selenate red 99.9 8.6E-24 1.9E-28 228.1 23.8 298 3-439 538-842 (1019)
34 TIGR01423 trypano_reduc trypan 99.9 2.3E-23 5.1E-28 214.8 26.0 322 3-437 2-351 (486)
35 TIGR02053 MerA mercuric reduct 99.9 4.7E-24 1E-28 221.0 20.8 302 5-437 1-329 (463)
36 PRK14989 nitrite reductase sub 99.9 6.7E-24 1.5E-28 230.6 22.0 293 1-438 1-311 (847)
37 PRK09754 phenylpropionate diox 99.9 6.1E-24 1.3E-28 215.6 20.0 292 2-438 1-310 (396)
38 PRK05976 dihydrolipoamide dehy 99.9 7.2E-23 1.6E-27 212.4 27.3 314 1-437 1-343 (472)
39 PRK13748 putative mercuric red 99.9 2.9E-23 6.3E-28 220.4 24.8 310 4-437 98-428 (561)
40 PRK06292 dihydrolipoamide dehy 99.9 2.7E-23 5.8E-28 215.4 23.9 310 2-437 1-331 (460)
41 PRK06115 dihydrolipoamide dehy 99.9 2.9E-23 6.3E-28 214.6 24.0 307 1-437 1-338 (466)
42 PRK14727 putative mercuric red 99.9 4E-23 8.6E-28 214.3 24.6 313 3-437 15-346 (479)
43 PRK06327 dihydrolipoamide dehy 99.9 1E-22 2.2E-27 211.2 26.7 311 1-437 1-347 (475)
44 PLN02546 glutathione reductase 99.9 6.7E-24 1.4E-28 221.2 16.8 301 4-437 79-413 (558)
45 PRK12831 putative oxidoreducta 99.9 2.9E-23 6.2E-28 213.6 20.9 168 3-236 139-315 (464)
46 TIGR03169 Nterm_to_SelD pyridi 99.9 2.3E-23 5E-28 209.5 19.7 288 6-436 1-308 (364)
47 TIGR02374 nitri_red_nirB nitri 99.9 3.1E-23 6.6E-28 225.9 21.5 287 7-438 1-302 (785)
48 TIGR03452 mycothione_red mycot 99.9 1.7E-22 3.6E-27 208.0 25.7 311 4-437 2-328 (452)
49 PRK11749 dihydropyrimidine deh 99.9 4E-23 8.8E-28 213.3 21.1 280 3-435 139-448 (457)
50 PTZ00058 glutathione reductase 99.9 1E-22 2.3E-27 212.1 24.0 314 3-437 47-432 (561)
51 PRK07845 flavoprotein disulfid 99.9 5.2E-22 1.1E-26 205.2 28.7 311 5-437 2-337 (466)
52 TIGR01438 TGR thioredoxin and 99.9 6.9E-23 1.5E-27 211.9 20.8 305 4-436 2-343 (484)
53 TIGR01316 gltA glutamate synth 99.9 8.8E-23 1.9E-27 209.6 21.1 165 3-236 132-306 (449)
54 TIGR01350 lipoamide_DH dihydro 99.9 4.2E-22 9E-27 206.7 26.1 304 5-437 2-332 (461)
55 PRK06912 acoL dihydrolipoamide 99.9 8.5E-22 1.8E-26 203.5 27.1 304 6-437 2-330 (458)
56 TIGR03315 Se_ygfK putative sel 99.9 4.2E-22 9.1E-27 216.3 23.4 296 4-439 537-840 (1012)
57 PRK12779 putative bifunctional 99.9 3.8E-22 8.2E-27 219.0 22.9 166 3-236 305-481 (944)
58 COG3486 IucD Lysine/ornithine 99.9 7E-21 1.5E-25 181.4 26.8 200 1-237 2-226 (436)
59 PTZ00153 lipoamide dehydrogena 99.9 2.9E-22 6.4E-27 211.3 19.0 317 4-437 116-495 (659)
60 PRK12778 putative bifunctional 99.9 9.5E-22 2.1E-26 214.4 21.1 167 3-236 430-605 (752)
61 PRK12814 putative NADPH-depend 99.9 1.6E-21 3.5E-26 208.4 20.8 164 4-236 193-358 (652)
62 KOG0405 Pyridine nucleotide-di 99.9 4E-21 8.7E-26 178.0 19.0 310 3-436 19-349 (478)
63 PRK12770 putative glutamate sy 99.9 1.3E-20 2.9E-25 188.1 23.1 180 4-236 18-207 (352)
64 PRK12775 putative trifunctiona 99.9 1.3E-20 2.8E-25 208.8 21.8 168 3-236 429-606 (1006)
65 PRK12810 gltD glutamate syntha 99.9 6.6E-20 1.4E-24 189.7 22.1 162 4-233 143-313 (471)
66 PRK12769 putative oxidoreducta 99.8 6.6E-20 1.4E-24 197.0 22.4 167 3-237 326-504 (654)
67 KOG2495 NADH-dehydrogenase (ub 99.8 3E-20 6.6E-25 177.3 17.3 307 3-437 54-395 (491)
68 TIGR01318 gltD_gamma_fam gluta 99.8 9.8E-20 2.1E-24 187.8 21.9 170 3-240 140-321 (467)
69 KOG0404 Thioredoxin reductase 99.8 1.3E-19 2.8E-24 158.0 18.2 274 4-416 8-294 (322)
70 TIGR03385 CoA_CoA_reduc CoA-di 99.8 1.2E-19 2.7E-24 186.3 21.5 237 84-437 51-304 (427)
71 TIGR01372 soxA sarcosine oxida 99.8 3.2E-19 7E-24 198.9 25.1 284 4-434 163-467 (985)
72 COG4529 Uncharacterized protei 99.8 1.1E-18 2.3E-23 171.4 23.8 205 5-243 2-237 (474)
73 KOG1336 Monodehydroascorbate/f 99.8 2.9E-19 6.3E-24 173.9 17.5 266 4-415 74-350 (478)
74 PRK12771 putative glutamate sy 99.8 1.7E-18 3.6E-23 183.3 21.0 163 4-236 137-302 (564)
75 PRK13984 putative oxidoreducta 99.8 1.9E-18 4.2E-23 184.6 19.7 166 3-232 282-454 (604)
76 PRK12809 putative oxidoreducta 99.8 3.3E-18 7.1E-23 183.1 21.5 166 3-236 309-486 (639)
77 KOG1335 Dihydrolipoamide dehyd 99.8 1.1E-18 2.5E-23 163.9 14.6 319 4-438 39-378 (506)
78 TIGR01317 GOGAT_sm_gam glutama 99.8 1.4E-17 3.1E-22 172.4 23.4 165 4-236 143-318 (485)
79 PLN02852 ferredoxin-NADP+ redu 99.8 2.3E-17 4.9E-22 168.4 22.5 171 3-236 25-221 (491)
80 COG1251 NirB NAD(P)H-nitrite r 99.8 7.3E-18 1.6E-22 171.7 17.4 287 3-437 2-306 (793)
81 PRK09897 hypothetical protein; 99.8 4.7E-17 1E-21 168.0 23.6 195 5-236 2-246 (534)
82 KOG4716 Thioredoxin reductase 99.7 3.3E-16 7.2E-21 145.0 22.5 195 3-235 18-231 (503)
83 COG3634 AhpF Alkyl hydroperoxi 99.7 1.3E-16 2.8E-21 148.2 18.3 175 4-235 211-387 (520)
84 PTZ00188 adrenodoxin reductase 99.6 9.2E-14 2E-18 139.6 24.3 40 4-43 39-81 (506)
85 KOG1800 Ferredoxin/adrenodoxin 99.6 9.3E-14 2E-18 131.1 19.0 170 4-236 20-215 (468)
86 PRK06567 putative bifunctional 99.6 4.5E-14 9.7E-19 151.3 15.4 37 3-39 382-420 (1028)
87 COG0446 HcaD Uncharacterized N 99.5 5.2E-13 1.1E-17 136.8 19.7 287 7-437 1-310 (415)
88 KOG0399 Glutamate synthase [Am 99.5 2E-13 4.3E-18 143.1 16.1 158 3-222 1784-1949(2142)
89 COG0493 GltD NADPH-dependent g 99.5 9.3E-14 2E-18 140.6 11.0 162 4-233 123-294 (457)
90 PF13454 NAD_binding_9: FAD-NA 99.4 5.9E-12 1.3E-16 110.1 12.0 126 8-154 1-155 (156)
91 COG1148 HdrA Heterodisulfide r 99.3 1.1E-10 2.4E-15 113.9 16.3 40 4-43 124-165 (622)
92 KOG1346 Programmed cell death 99.3 4.8E-11 1.1E-15 113.9 13.4 250 5-377 179-455 (659)
93 COG2081 Predicted flavoprotein 99.2 2.3E-11 4.9E-16 117.3 8.6 135 3-161 2-171 (408)
94 KOG2755 Oxidoreductase [Genera 99.2 4.1E-10 9E-15 101.5 13.2 162 6-243 1-172 (334)
95 PF03486 HI0933_like: HI0933-l 99.1 1.9E-10 4.1E-15 115.7 10.4 133 5-160 1-169 (409)
96 PRK06847 hypothetical protein; 99.1 1.1E-09 2.4E-14 110.7 15.5 132 1-156 1-163 (375)
97 PF07992 Pyr_redox_2: Pyridine 99.1 7E-11 1.5E-15 108.3 4.9 151 6-204 1-159 (201)
98 PRK04176 ribulose-1,5-biphosph 99.0 2.1E-09 4.6E-14 101.8 10.8 136 4-156 25-173 (257)
99 TIGR02023 BchP-ChlP geranylger 99.0 6.1E-09 1.3E-13 105.7 14.6 132 5-156 1-155 (388)
100 TIGR02032 GG-red-SF geranylger 99.0 3.7E-09 7.9E-14 103.0 11.9 129 5-156 1-148 (295)
101 COG3380 Predicted NAD/FAD-depe 99.0 2.1E-09 4.6E-14 97.7 8.2 122 5-153 2-157 (331)
102 PRK06834 hypothetical protein; 99.0 1.1E-08 2.3E-13 106.6 14.6 130 3-156 2-156 (488)
103 PRK10157 putative oxidoreducta 99.0 9.1E-09 2E-13 105.5 13.9 133 1-156 1-164 (428)
104 PRK08773 2-octaprenyl-3-methyl 99.0 6.4E-09 1.4E-13 105.8 12.7 131 3-156 5-169 (392)
105 PRK07494 2-octaprenyl-6-methox 98.9 5.8E-09 1.3E-13 106.0 12.3 131 3-156 6-167 (388)
106 TIGR00292 thiazole biosynthesi 98.9 4.6E-09 1E-13 99.2 10.4 137 4-156 21-170 (254)
107 PRK08244 hypothetical protein; 98.9 1.3E-08 2.8E-13 106.7 14.6 132 4-156 2-159 (493)
108 PRK07364 2-octaprenyl-6-methox 98.9 7.5E-09 1.6E-13 106.2 12.6 135 2-156 16-181 (415)
109 PF01494 FAD_binding_3: FAD bi 98.9 3.7E-09 8E-14 105.8 9.7 134 5-156 2-172 (356)
110 TIGR01790 carotene-cycl lycope 98.9 9.5E-09 2.1E-13 104.4 12.7 127 6-155 1-140 (388)
111 PRK08013 oxidoreductase; Provi 98.9 1.1E-08 2.3E-13 104.4 12.5 132 1-156 1-168 (400)
112 PLN02463 lycopene beta cyclase 98.9 1E-08 2.3E-13 104.7 12.0 128 4-156 28-169 (447)
113 PRK06184 hypothetical protein; 98.9 2.5E-08 5.5E-13 104.7 14.9 134 3-156 2-168 (502)
114 TIGR02028 ChlP geranylgeranyl 98.9 2.6E-08 5.5E-13 101.3 14.4 135 5-156 1-160 (398)
115 PRK08163 salicylate hydroxylas 98.9 1E-08 2.3E-13 104.4 11.5 133 1-156 1-166 (396)
116 PRK06753 hypothetical protein; 98.9 1.7E-08 3.6E-13 102.0 12.6 125 6-156 2-152 (373)
117 PRK06183 mhpA 3-(3-hydroxyphen 98.9 3.7E-08 7.9E-13 104.3 15.4 133 4-156 10-174 (538)
118 COG0644 FixC Dehydrogenases (f 98.9 1.6E-08 3.4E-13 102.9 11.8 131 3-156 2-152 (396)
119 PRK05714 2-octaprenyl-3-methyl 98.9 1.8E-08 4E-13 102.9 12.2 130 4-156 2-168 (405)
120 PRK09126 hypothetical protein; 98.8 3.1E-08 6.6E-13 100.8 13.2 131 3-156 2-167 (392)
121 PRK06126 hypothetical protein; 98.8 6.8E-08 1.5E-12 102.6 15.9 136 3-156 6-188 (545)
122 PRK07190 hypothetical protein; 98.8 5.3E-08 1.1E-12 101.3 14.3 133 1-156 1-165 (487)
123 PRK07333 2-octaprenyl-6-methox 98.8 3.4E-08 7.4E-13 100.9 12.7 129 5-156 2-167 (403)
124 TIGR01988 Ubi-OHases Ubiquinon 98.8 2.6E-08 5.6E-13 101.1 11.5 128 6-156 1-163 (385)
125 PRK08132 FAD-dependent oxidore 98.8 7.4E-08 1.6E-12 102.3 15.2 134 3-156 22-185 (547)
126 PRK10015 oxidoreductase; Provi 98.8 3.8E-08 8.3E-13 100.8 12.5 133 1-156 1-164 (429)
127 PRK06185 hypothetical protein; 98.8 4.2E-08 9.1E-13 100.4 12.6 135 2-156 4-169 (407)
128 PRK07588 hypothetical protein; 98.8 3.9E-08 8.6E-13 100.0 12.2 128 5-156 1-158 (391)
129 PRK07608 ubiquinone biosynthes 98.8 4.5E-08 9.8E-13 99.4 12.6 130 3-156 4-167 (388)
130 PF05834 Lycopene_cycl: Lycope 98.8 5.7E-08 1.2E-12 97.9 13.0 120 6-155 1-141 (374)
131 PRK08850 2-octaprenyl-6-methox 98.8 4.1E-08 8.8E-13 100.3 12.1 133 1-156 1-168 (405)
132 PRK07236 hypothetical protein; 98.8 3.4E-08 7.3E-13 100.3 11.0 129 3-156 5-154 (386)
133 PRK08020 ubiF 2-octaprenyl-3-m 98.8 5.1E-08 1.1E-12 99.2 11.9 131 3-156 4-169 (391)
134 PRK07045 putative monooxygenas 98.8 9.5E-08 2.1E-12 97.1 13.8 132 3-156 4-165 (388)
135 COG0654 UbiH 2-polyprenyl-6-me 98.8 6.8E-08 1.5E-12 98.0 12.3 130 4-156 2-162 (387)
136 PRK08849 2-octaprenyl-3-methyl 98.7 9E-08 1.9E-12 97.1 12.9 132 1-156 1-167 (384)
137 PLN00093 geranylgeranyl diphos 98.7 1.4E-07 3.1E-12 96.9 13.9 137 3-156 38-199 (450)
138 PRK05732 2-octaprenyl-6-methox 98.7 7.9E-08 1.7E-12 97.9 11.9 132 2-156 1-169 (395)
139 TIGR01984 UbiH 2-polyprenyl-6- 98.7 5.9E-08 1.3E-12 98.4 10.8 128 6-156 1-162 (382)
140 PLN02697 lycopene epsilon cycl 98.7 1.3E-07 2.8E-12 98.3 13.4 128 4-156 108-248 (529)
141 PRK11445 putative oxidoreducta 98.7 1.6E-07 3.4E-12 93.9 13.4 131 5-156 2-157 (351)
142 PRK06617 2-octaprenyl-6-methox 98.7 1.2E-07 2.6E-12 95.8 12.5 126 5-156 2-160 (374)
143 COG1635 THI4 Ribulose 1,5-bisp 98.7 6.3E-08 1.4E-12 85.7 8.8 138 5-155 31-177 (262)
144 TIGR00275 flavoprotein, HI0933 98.7 1.4E-07 3E-12 95.9 12.5 123 8-156 1-160 (400)
145 PF01266 DAO: FAD dependent ox 98.7 5.3E-08 1.2E-12 97.5 9.4 59 74-156 144-203 (358)
146 TIGR03219 salicylate_mono sali 98.7 1.2E-07 2.6E-12 97.2 11.9 126 6-156 2-159 (414)
147 PRK07538 hypothetical protein; 98.7 3.2E-07 6.9E-12 94.0 14.6 135 5-156 1-165 (413)
148 PF00070 Pyr_redox: Pyridine n 98.7 2.2E-07 4.8E-12 71.2 9.8 67 6-108 1-69 (80)
149 PRK08243 4-hydroxybenzoate 3-m 98.7 2.4E-07 5.2E-12 94.2 12.9 134 4-156 2-163 (392)
150 PRK06475 salicylate hydroxylas 98.7 2.9E-07 6.3E-12 93.8 13.4 132 5-156 3-167 (400)
151 PF13450 NAD_binding_8: NAD(P) 98.6 2.7E-08 5.9E-13 73.3 4.0 50 9-58 1-52 (68)
152 PRK12266 glpD glycerol-3-phosp 98.6 4.4E-07 9.5E-12 95.1 14.3 39 1-39 3-43 (508)
153 PLN02661 Putative thiazole syn 98.6 1.7E-07 3.6E-12 91.2 10.0 136 4-155 92-243 (357)
154 TIGR01989 COQ6 Ubiquinone bios 98.6 3E-07 6.6E-12 94.7 12.2 135 5-156 1-183 (437)
155 PRK06996 hypothetical protein; 98.6 2.3E-07 5E-12 94.5 11.1 130 3-154 10-172 (398)
156 TIGR02360 pbenz_hydroxyl 4-hyd 98.6 5.2E-07 1.1E-11 91.6 13.4 134 4-156 2-163 (390)
157 PRK13369 glycerol-3-phosphate 98.6 5.8E-07 1.3E-11 94.2 14.0 61 77-156 155-215 (502)
158 PRK05868 hypothetical protein; 98.6 7.3E-07 1.6E-11 89.9 14.1 127 5-156 2-160 (372)
159 PRK08274 tricarballylate dehyd 98.6 7.1E-07 1.5E-11 93.0 14.4 39 1-39 1-43 (466)
160 PRK08294 phenol 2-monooxygenas 98.6 1.1E-06 2.3E-11 94.4 16.1 143 1-156 29-210 (634)
161 PRK11259 solA N-methyltryptoph 98.6 4.9E-07 1.1E-11 91.5 12.5 35 3-37 2-38 (376)
162 TIGR01377 soxA_mon sarcosine o 98.6 5E-07 1.1E-11 91.5 12.5 57 75-155 143-199 (380)
163 PRK05192 tRNA uridine 5-carbox 98.6 7.7E-07 1.7E-11 92.8 13.5 39 1-39 1-42 (618)
164 PF01946 Thi4: Thi4 family; PD 98.6 7.3E-08 1.6E-12 85.9 4.8 135 4-155 17-164 (230)
165 PRK11728 hydroxyglutarate oxid 98.6 5.7E-07 1.2E-11 91.5 12.1 35 4-38 2-40 (393)
166 PF12831 FAD_oxidored: FAD dep 98.6 4.5E-08 9.9E-13 100.3 4.0 131 6-155 1-149 (428)
167 TIGR01813 flavo_cyto_c flavocy 98.5 2E-06 4.4E-11 88.8 15.8 132 6-156 1-192 (439)
168 TIGR01350 lipoamide_DH dihydro 98.5 2.1E-06 4.5E-11 89.4 15.2 101 4-162 170-272 (461)
169 TIGR01789 lycopene_cycl lycope 98.5 6.9E-07 1.5E-11 89.7 11.1 138 6-179 1-155 (370)
170 COG1249 Lpd Pyruvate/2-oxoglut 98.5 1.8E-06 3.9E-11 87.9 13.9 103 4-164 173-277 (454)
171 KOG1335 Dihydrolipoamide dehyd 98.5 2E-06 4.3E-11 82.3 13.0 150 4-218 211-365 (506)
172 PRK05976 dihydrolipoamide dehy 98.5 3.4E-06 7.3E-11 87.9 15.8 104 4-163 180-285 (472)
173 PF06039 Mqo: Malate:quinone o 98.5 9.6E-07 2.1E-11 87.5 10.8 49 91-156 196-244 (488)
174 PRK12409 D-amino acid dehydrog 98.5 2.2E-06 4.7E-11 87.8 13.7 33 5-37 2-36 (410)
175 PRK06481 fumarate reductase fl 98.5 3.8E-06 8.2E-11 88.1 15.6 37 4-40 61-99 (506)
176 COG0579 Predicted dehydrogenas 98.5 1.6E-06 3.5E-11 86.8 12.1 37 3-39 2-42 (429)
177 PRK06416 dihydrolipoamide dehy 98.5 6E-06 1.3E-10 85.9 16.8 102 4-162 172-275 (462)
178 PRK06175 L-aspartate oxidase; 98.4 2.6E-06 5.6E-11 87.5 13.8 39 1-39 1-40 (433)
179 PF00890 FAD_binding_2: FAD bi 98.4 2.2E-06 4.9E-11 87.9 13.0 64 75-156 139-203 (417)
180 PRK04965 NADH:flavorubredoxin 98.4 3.1E-06 6.8E-11 85.5 13.8 96 4-155 141-238 (377)
181 PRK13339 malate:quinone oxidor 98.4 3.3E-06 7E-11 87.2 13.6 35 4-38 6-44 (497)
182 PRK11101 glpA sn-glycerol-3-ph 98.4 2.4E-06 5.2E-11 90.4 12.9 33 4-36 6-40 (546)
183 PF00070 Pyr_redox: Pyridine n 98.4 2.7E-07 5.9E-12 70.7 4.2 35 199-238 1-35 (80)
184 KOG2820 FAD-dependent oxidored 98.4 2.9E-06 6.3E-11 80.0 11.7 141 1-162 4-217 (399)
185 TIGR02053 MerA mercuric reduct 98.4 7.2E-06 1.6E-10 85.3 16.2 102 4-162 166-269 (463)
186 PRK05329 anaerobic glycerol-3- 98.4 5.5E-06 1.2E-10 83.9 14.3 32 4-35 2-35 (422)
187 PRK07818 dihydrolipoamide dehy 98.4 1E-05 2.2E-10 84.2 16.7 103 4-162 172-276 (466)
188 TIGR03364 HpnW_proposed FAD de 98.4 2.7E-06 5.9E-11 85.6 12.0 32 5-36 1-34 (365)
189 PTZ00383 malate:quinone oxidor 98.4 2.2E-06 4.8E-11 88.7 11.4 61 75-156 209-273 (497)
190 PRK07208 hypothetical protein; 98.4 6.5E-07 1.4E-11 93.6 7.5 43 1-43 1-45 (479)
191 PRK06327 dihydrolipoamide dehy 98.4 1.2E-05 2.7E-10 83.7 16.9 104 4-163 183-288 (475)
192 PRK06370 mercuric reductase; V 98.4 9.8E-06 2.1E-10 84.3 15.9 102 4-162 171-274 (463)
193 PRK09754 phenylpropionate diox 98.4 2.8E-06 6.1E-11 86.4 11.4 98 4-161 144-243 (396)
194 KOG0685 Flavin-containing amin 98.4 2.6E-06 5.7E-11 84.1 10.4 40 3-42 20-62 (498)
195 PRK06116 glutathione reductase 98.3 9.8E-06 2.1E-10 84.0 15.2 100 4-162 167-268 (450)
196 PRK01747 mnmC bifunctional tRN 98.3 3.7E-06 8E-11 91.3 12.4 33 5-37 261-295 (662)
197 PRK06912 acoL dihydrolipoamide 98.3 1.4E-05 2.9E-10 83.1 16.1 100 4-162 170-271 (458)
198 TIGR01320 mal_quin_oxido malat 98.3 5.4E-06 1.2E-10 86.1 12.8 64 76-156 177-240 (483)
199 COG0578 GlpA Glycerol-3-phosph 98.3 5.9E-06 1.3E-10 84.6 12.4 40 3-42 11-52 (532)
200 PRK07251 pyridine nucleotide-d 98.3 7.8E-06 1.7E-10 84.4 13.7 98 4-162 157-256 (438)
201 PRK06115 dihydrolipoamide dehy 98.3 9.1E-06 2E-10 84.5 14.2 104 4-162 174-279 (466)
202 PF01134 GIDA: Glucose inhibit 98.3 1.8E-06 3.8E-11 85.5 8.2 124 6-155 1-151 (392)
203 COG1252 Ndh NADH dehydrogenase 98.3 5.9E-06 1.3E-10 82.1 11.9 130 5-207 156-301 (405)
204 PRK05249 soluble pyridine nucl 98.3 1.3E-05 2.9E-10 83.3 15.2 99 4-162 175-275 (461)
205 TIGR03329 Phn_aa_oxid putative 98.3 3.3E-06 7.1E-11 87.7 10.5 32 4-35 24-59 (460)
206 PRK06452 sdhA succinate dehydr 98.3 7.5E-06 1.6E-10 86.9 13.2 37 3-39 4-42 (566)
207 PRK08205 sdhA succinate dehydr 98.3 1E-05 2.2E-10 86.4 14.1 39 1-39 2-41 (583)
208 PRK05257 malate:quinone oxidor 98.3 8.2E-06 1.8E-10 84.8 13.0 62 78-156 184-246 (494)
209 PRK07573 sdhA succinate dehydr 98.3 1.3E-05 2.8E-10 86.1 14.2 35 4-38 35-71 (640)
210 PLN02464 glycerol-3-phosphate 98.3 1E-05 2.2E-10 86.8 13.1 37 3-39 70-108 (627)
211 PRK13977 myosin-cross-reactive 98.2 5.5E-06 1.2E-10 85.7 10.6 39 4-42 22-66 (576)
212 TIGR03385 CoA_CoA_reduc CoA-di 98.2 1.4E-05 2.9E-10 82.4 13.6 98 4-162 137-236 (427)
213 PLN02927 antheraxanthin epoxid 98.2 8.1E-06 1.7E-10 86.7 12.0 33 3-35 80-114 (668)
214 TIGR01421 gluta_reduc_1 glutat 98.2 2.8E-05 6.1E-10 80.4 15.7 101 4-162 166-268 (450)
215 PRK07057 sdhA succinate dehydr 98.2 2.2E-05 4.7E-10 83.9 15.1 65 75-156 146-211 (591)
216 TIGR01424 gluta_reduc_2 glutat 98.2 1.3E-05 2.9E-10 82.8 13.3 99 4-162 166-266 (446)
217 PRK07846 mycothione reductase; 98.2 2.2E-05 4.8E-10 81.1 14.8 99 4-163 166-266 (451)
218 PRK06263 sdhA succinate dehydr 98.2 1.3E-05 2.9E-10 84.8 13.5 135 4-155 7-196 (543)
219 KOG0029 Amine oxidase [Seconda 98.2 9.6E-07 2.1E-11 91.1 4.5 41 3-43 14-56 (501)
220 PLN02985 squalene monooxygenas 98.2 1.9E-05 4.1E-10 82.7 14.2 32 4-35 43-76 (514)
221 TIGR01812 sdhA_frdA_Gneg succi 98.2 1.8E-05 3.9E-10 84.4 14.3 34 6-39 1-36 (566)
222 PRK06854 adenylylsulfate reduc 98.2 1.6E-05 3.4E-10 85.1 13.5 34 4-37 11-48 (608)
223 PRK05945 sdhA succinate dehydr 98.2 1.5E-05 3.3E-10 84.9 13.4 37 3-39 2-42 (575)
224 PRK08401 L-aspartate oxidase; 98.2 1E-05 2.2E-10 84.0 11.7 33 5-37 2-36 (466)
225 PRK08275 putative oxidoreducta 98.2 8.4E-06 1.8E-10 86.5 11.0 64 75-155 135-199 (554)
226 KOG3851 Sulfide:quinone oxidor 98.2 5.1E-05 1.1E-09 71.1 14.6 34 3-36 38-75 (446)
227 TIGR00551 nadB L-aspartate oxi 98.2 2.1E-05 4.6E-10 82.2 13.8 62 75-156 126-189 (488)
228 PRK09564 coenzyme A disulfide 98.2 1.9E-05 4.1E-10 81.8 13.4 99 4-162 149-249 (444)
229 PRK07121 hypothetical protein; 98.2 8.5E-06 1.8E-10 85.4 10.8 37 4-40 20-58 (492)
230 PRK00711 D-amino acid dehydrog 98.2 1.5E-05 3.3E-10 81.8 12.2 32 6-37 2-35 (416)
231 PRK07803 sdhA succinate dehydr 98.2 1.9E-05 4.1E-10 84.8 13.3 35 4-38 8-44 (626)
232 PLN02507 glutathione reductase 98.2 1.9E-05 4.1E-10 82.6 12.7 99 4-162 203-303 (499)
233 PTZ00139 Succinate dehydrogena 98.2 2.5E-05 5.4E-10 83.7 13.8 64 75-155 164-228 (617)
234 PRK13512 coenzyme A disulfide 98.2 2E-05 4.4E-10 81.2 12.6 95 4-162 148-244 (438)
235 COG0665 DadA Glycine/D-amino a 98.2 1.8E-05 4E-10 80.3 12.2 38 1-38 1-40 (387)
236 PRK07845 flavoprotein disulfid 98.2 2.3E-05 4.9E-10 81.5 13.0 98 5-162 178-277 (466)
237 PRK08010 pyridine nucleotide-d 98.1 2.5E-05 5.4E-10 80.8 13.1 98 4-162 158-257 (441)
238 TIGR00136 gidA glucose-inhibit 98.1 2.6E-05 5.6E-10 81.5 13.0 130 5-155 1-153 (617)
239 PRK14727 putative mercuric red 98.1 5.5E-05 1.2E-09 78.9 15.6 97 4-162 188-286 (479)
240 PRK06467 dihydrolipoamide dehy 98.1 2.5E-05 5.5E-10 81.2 13.0 102 4-162 174-277 (471)
241 COG1233 Phytoene dehydrogenase 98.1 2.3E-06 4.9E-11 89.2 5.0 52 3-54 2-55 (487)
242 PRK09078 sdhA succinate dehydr 98.1 4.5E-05 9.8E-10 81.6 14.9 64 75-155 147-211 (598)
243 TIGR01373 soxB sarcosine oxida 98.1 2.4E-05 5.3E-10 80.0 12.5 33 3-35 29-65 (407)
244 PRK08071 L-aspartate oxidase; 98.1 3.2E-05 7E-10 81.1 13.5 36 4-39 3-39 (510)
245 PRK07804 L-aspartate oxidase; 98.1 3.8E-05 8.2E-10 81.2 14.0 36 4-39 16-53 (541)
246 TIGR03452 mycothione_red mycot 98.1 5.4E-05 1.2E-09 78.4 14.8 98 4-162 169-268 (452)
247 TIGR01423 trypano_reduc trypan 98.1 3.2E-05 7E-10 80.5 13.2 100 4-162 187-291 (486)
248 PRK08641 sdhA succinate dehydr 98.1 5.5E-05 1.2E-09 80.7 15.2 37 3-39 2-40 (589)
249 KOG2415 Electron transfer flav 98.1 1.2E-05 2.6E-10 77.8 8.9 102 4-107 76-211 (621)
250 PRK12835 3-ketosteroid-delta-1 98.1 4E-05 8.7E-10 81.6 13.9 38 3-40 10-49 (584)
251 PRK14694 putative mercuric red 98.1 8.1E-05 1.8E-09 77.5 15.8 97 4-162 178-276 (468)
252 PRK08958 sdhA succinate dehydr 98.1 5.8E-05 1.3E-09 80.5 14.9 36 4-39 7-44 (588)
253 PRK07395 L-aspartate oxidase; 98.1 2.2E-05 4.8E-10 82.9 11.5 36 4-39 9-45 (553)
254 KOG2614 Kynurenine 3-monooxyge 98.1 2E-05 4.4E-10 76.8 10.0 34 4-37 2-37 (420)
255 PLN00128 Succinate dehydrogena 98.1 5.1E-05 1.1E-09 81.4 14.2 36 4-39 50-87 (635)
256 PRK06069 sdhA succinate dehydr 98.1 4E-05 8.7E-10 81.8 13.3 37 3-39 4-45 (577)
257 PRK12845 3-ketosteroid-delta-1 98.1 8.6E-05 1.9E-09 78.7 15.5 39 4-43 16-56 (564)
258 PRK09077 L-aspartate oxidase; 98.1 7E-05 1.5E-09 79.2 14.4 36 4-39 8-44 (536)
259 PRK12839 hypothetical protein; 98.1 9.9E-05 2.1E-09 78.4 15.6 39 3-41 7-47 (572)
260 PRK08255 salicylyl-CoA 5-hydro 98.1 6.2E-06 1.3E-10 90.7 6.6 115 6-156 2-141 (765)
261 PTZ00058 glutathione reductase 98.0 4.7E-05 1E-09 80.3 12.9 101 4-162 237-339 (561)
262 PLN02815 L-aspartate oxidase 98.0 6.7E-05 1.5E-09 79.8 14.0 35 4-39 29-65 (594)
263 TIGR01438 TGR thioredoxin and 98.0 5.7E-05 1.2E-09 78.7 13.2 101 4-162 180-282 (484)
264 PRK06292 dihydrolipoamide dehy 98.0 0.00011 2.3E-09 76.5 15.0 102 4-163 169-272 (460)
265 TIGR01176 fum_red_Fp fumarate 98.0 0.00012 2.6E-09 77.9 15.2 36 4-39 3-42 (580)
266 TIGR01811 sdhA_Bsu succinate d 98.0 9E-05 1.9E-09 79.2 14.3 32 7-38 1-34 (603)
267 PRK13748 putative mercuric red 98.0 5.1E-05 1.1E-09 81.0 12.4 97 4-162 270-368 (561)
268 PRK08626 fumarate reductase fl 98.0 8.1E-05 1.7E-09 80.3 13.7 35 4-38 5-41 (657)
269 COG2081 Predicted flavoprotein 98.0 3.5E-05 7.6E-10 75.1 9.7 155 198-371 4-167 (408)
270 PRK09231 fumarate reductase fl 98.0 0.0001 2.3E-09 78.5 14.3 36 4-39 4-43 (582)
271 PTZ00052 thioredoxin reductase 98.0 7.8E-05 1.7E-09 78.1 12.9 98 4-162 182-281 (499)
272 PRK12842 putative succinate de 98.0 0.00016 3.6E-09 77.1 15.3 37 4-40 9-47 (574)
273 PRK11883 protoporphyrinogen ox 98.0 7.3E-06 1.6E-10 85.1 4.7 39 5-43 1-43 (451)
274 PTZ00153 lipoamide dehydrogena 97.9 0.00022 4.7E-09 76.5 15.8 106 5-163 313-431 (659)
275 PTZ00367 squalene epoxidase; P 97.9 5.3E-05 1.1E-09 79.9 10.8 33 3-35 32-66 (567)
276 PTZ00318 NADH dehydrogenase-li 97.9 0.00013 2.9E-09 74.8 13.6 90 5-155 174-279 (424)
277 PRK12837 3-ketosteroid-delta-1 97.9 0.00017 3.7E-09 75.9 14.6 35 4-39 7-43 (513)
278 PRK14989 nitrite reductase sub 97.9 6.9E-05 1.5E-09 82.8 11.8 101 4-161 145-247 (847)
279 TIGR02374 nitri_red_nirB nitri 97.9 6E-05 1.3E-09 83.2 11.3 100 4-162 140-241 (785)
280 PRK06134 putative FAD-binding 97.9 0.00026 5.7E-09 75.6 15.4 38 3-40 11-50 (581)
281 PRK07233 hypothetical protein; 97.9 1.5E-05 3.3E-10 82.2 5.8 38 6-43 1-40 (434)
282 COG0446 HcaD Uncharacterized N 97.9 9E-05 2E-09 75.8 11.5 96 5-155 137-236 (415)
283 PRK12843 putative FAD-binding 97.9 0.00025 5.5E-09 75.6 15.1 39 4-42 16-56 (578)
284 COG0562 Glf UDP-galactopyranos 97.9 2.5E-05 5.5E-10 73.4 6.5 84 5-106 2-88 (374)
285 PRK07843 3-ketosteroid-delta-1 97.9 0.00028 6.2E-09 74.9 15.4 37 4-40 7-45 (557)
286 PLN02568 polyamine oxidase 97.9 1.2E-05 2.7E-10 84.4 5.0 43 1-43 2-51 (539)
287 PLN02676 polyamine oxidase 97.9 1.5E-05 3.3E-10 82.9 5.5 50 3-52 25-77 (487)
288 PRK12844 3-ketosteroid-delta-1 97.9 0.00012 2.7E-09 77.6 12.4 38 3-40 5-44 (557)
289 PLN02268 probable polyamine ox 97.9 1.3E-05 2.9E-10 82.6 5.0 39 5-43 1-41 (435)
290 PF13454 NAD_binding_9: FAD-NA 97.9 0.00018 3.8E-09 62.9 11.2 36 201-236 1-36 (156)
291 KOG2404 Fumarate reductase, fl 97.9 0.00012 2.6E-09 68.7 10.2 36 6-41 11-48 (477)
292 PTZ00306 NADH-dependent fumara 97.8 0.00028 6.1E-09 81.1 15.5 37 4-40 409-447 (1167)
293 PLN02546 glutathione reductase 97.8 0.00013 2.9E-09 76.9 11.9 100 4-162 252-353 (558)
294 TIGR02485 CobZ_N-term precorri 97.8 0.00019 4E-09 74.0 12.5 63 75-156 121-183 (432)
295 TIGR00562 proto_IX_ox protopor 97.8 1.8E-05 4E-10 82.3 5.0 40 4-43 2-47 (462)
296 COG1232 HemY Protoporphyrinoge 97.8 2.7E-05 5.9E-10 78.6 5.7 39 5-43 1-43 (444)
297 TIGR03140 AhpF alkyl hydropero 97.8 0.0002 4.4E-09 75.4 12.2 99 4-162 352-453 (515)
298 PF13434 K_oxygenase: L-lysine 97.8 3.6E-05 7.8E-10 76.1 6.1 133 3-154 189-339 (341)
299 PRK07512 L-aspartate oxidase; 97.8 0.00026 5.6E-09 74.4 12.9 33 4-36 9-41 (513)
300 PRK10262 thioredoxin reductase 97.8 0.00025 5.4E-09 70.0 12.1 103 4-162 146-251 (321)
301 PLN02576 protoporphyrinogen ox 97.8 2.9E-05 6.3E-10 81.6 5.4 40 4-43 12-54 (496)
302 TIGR02733 desat_CrtD C-3',4' d 97.8 2.9E-05 6.3E-10 81.5 5.2 48 5-52 2-51 (492)
303 COG3349 Uncharacterized conser 97.8 2.4E-05 5.3E-10 78.8 4.3 39 5-43 1-41 (485)
304 TIGR03169 Nterm_to_SelD pyridi 97.7 0.0005 1.1E-08 69.2 12.9 90 4-155 145-242 (364)
305 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.8E-05 8.3E-10 76.6 4.4 39 5-43 2-42 (377)
306 TIGR01292 TRX_reduct thioredox 97.7 0.00038 8.3E-09 67.8 11.4 93 4-154 141-236 (300)
307 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 0.00014 3E-09 73.3 8.3 34 5-38 1-36 (433)
308 TIGR02734 crtI_fam phytoene de 97.6 3.9E-05 8.4E-10 80.8 4.2 44 7-50 1-46 (502)
309 KOG1336 Monodehydroascorbate/f 97.6 0.00042 9E-09 69.0 10.9 105 4-165 213-319 (478)
310 TIGR02730 carot_isom carotene 97.6 4.5E-05 9.7E-10 80.0 4.6 48 5-52 1-50 (493)
311 PF04820 Trp_halogenase: Trypt 97.6 9.5E-05 2E-09 76.3 6.8 59 74-156 151-211 (454)
312 PRK12416 protoporphyrinogen ox 97.6 4.6E-05 9.9E-10 79.4 4.4 39 5-43 2-48 (463)
313 COG0029 NadB Aspartate oxidase 97.6 0.00043 9.3E-09 69.3 10.4 32 6-37 9-41 (518)
314 PRK13800 putative oxidoreducta 97.6 0.00068 1.5E-08 76.1 13.4 33 4-36 13-47 (897)
315 PRK15317 alkyl hydroperoxide r 97.6 0.00056 1.2E-08 72.1 11.8 98 4-162 351-452 (517)
316 TIGR02061 aprA adenosine phosp 97.6 0.00054 1.2E-08 73.0 11.6 31 6-36 1-37 (614)
317 COG2907 Predicted NAD/FAD-bind 97.6 5.2E-05 1.1E-09 72.0 3.5 40 4-43 8-48 (447)
318 COG1053 SdhA Succinate dehydro 97.6 0.00047 1E-08 72.5 10.7 37 2-38 4-42 (562)
319 PTZ00363 rab-GDP dissociation 97.6 7.8E-05 1.7E-09 76.2 4.8 43 1-43 1-45 (443)
320 TIGR02731 phytoene_desat phyto 97.5 8E-05 1.7E-09 77.3 4.4 38 6-43 1-40 (453)
321 PLN02852 ferredoxin-NADP+ redu 97.5 0.00011 2.4E-09 75.8 5.2 39 195-236 24-62 (491)
322 PLN02529 lysine-specific histo 97.5 0.0001 2.3E-09 79.4 4.6 40 4-43 160-201 (738)
323 KOG1298 Squalene monooxygenase 97.5 0.0012 2.5E-08 63.9 11.0 31 4-34 45-77 (509)
324 COG0445 GidA Flavin-dependent 97.5 0.00037 7.9E-09 70.5 8.0 34 1-34 1-36 (621)
325 PF01134 GIDA: Glucose inhibit 97.5 0.00026 5.7E-09 70.3 6.8 42 328-369 103-150 (392)
326 KOG2665 Predicted FAD-dependen 97.5 0.00065 1.4E-08 63.8 8.9 35 4-38 48-86 (453)
327 COG2509 Uncharacterized FAD-de 97.4 0.0011 2.3E-08 65.8 10.1 58 77-156 173-230 (486)
328 TIGR01316 gltA glutamate synth 97.4 0.0075 1.6E-07 62.4 16.8 32 4-35 272-305 (449)
329 COG1231 Monoamine oxidase [Ami 97.3 0.00019 4.1E-09 71.3 4.2 41 3-43 6-48 (450)
330 PRK12834 putative FAD-binding 97.3 0.00019 4.1E-09 76.2 4.6 40 1-40 1-44 (549)
331 PRK12831 putative oxidoreducta 97.3 0.0071 1.5E-07 62.8 16.1 32 4-35 281-314 (464)
332 PLN02328 lysine-specific histo 97.3 0.0002 4.3E-09 77.7 4.6 40 4-43 238-279 (808)
333 TIGR02732 zeta_caro_desat caro 97.3 0.00021 4.5E-09 74.4 4.2 38 6-43 1-40 (474)
334 PRK12770 putative glutamate sy 97.3 0.0062 1.3E-07 60.9 14.6 31 5-35 173-206 (352)
335 PLN02487 zeta-carotene desatur 97.3 0.00026 5.7E-09 74.6 4.7 39 5-43 76-116 (569)
336 PLN02463 lycopene beta cyclase 97.2 0.0008 1.7E-08 69.1 7.7 47 326-372 120-170 (447)
337 PRK11749 dihydropyrimidine deh 97.2 0.01 2.3E-07 61.6 16.1 32 4-35 273-307 (457)
338 PRK06847 hypothetical protein; 97.2 0.0015 3.2E-08 66.0 9.6 51 323-373 110-165 (375)
339 KOG2495 NADH-dehydrogenase (ub 97.2 0.00061 1.3E-08 66.8 6.0 99 6-162 220-334 (491)
340 KOG0042 Glycerol-3-phosphate d 97.2 0.0004 8.7E-09 69.8 4.7 40 4-43 67-108 (680)
341 PRK12779 putative bifunctional 97.2 0.0004 8.6E-09 77.7 5.1 36 195-235 304-339 (944)
342 KOG1276 Protoporphyrinogen oxi 97.2 0.00038 8.2E-09 68.2 4.2 39 4-42 11-53 (491)
343 COG4529 Uncharacterized protei 97.1 0.0054 1.2E-07 61.7 12.0 37 198-236 2-38 (474)
344 PLN03000 amine oxidase 97.1 0.00046 9.9E-09 75.1 4.8 40 4-43 184-225 (881)
345 PLN02612 phytoene desaturase 97.1 0.00044 9.5E-09 73.5 4.5 39 4-42 93-133 (567)
346 PRK05335 tRNA (uracil-5-)-meth 97.1 0.0005 1.1E-08 69.0 4.4 34 4-37 2-37 (436)
347 TIGR03143 AhpF_homolog putativ 97.1 0.0051 1.1E-07 65.5 12.3 33 4-36 143-177 (555)
348 PTZ00188 adrenodoxin reductase 97.1 0.00077 1.7E-08 68.8 5.4 37 195-236 37-74 (506)
349 PLN02976 amine oxidase 97.1 0.00052 1.1E-08 77.5 4.5 40 4-43 693-734 (1713)
350 TIGR01789 lycopene_cycl lycope 97.0 0.002 4.3E-08 64.8 8.2 33 339-371 106-138 (370)
351 TIGR02462 pyranose_ox pyranose 97.0 0.00067 1.5E-08 70.9 4.2 39 5-43 1-41 (544)
352 PRK12810 gltD glutamate syntha 97.0 0.021 4.6E-07 59.5 15.3 32 4-35 281-315 (471)
353 PF03486 HI0933_like: HI0933-l 96.9 0.00039 8.4E-09 70.4 2.0 49 324-372 113-167 (409)
354 PRK12778 putative bifunctional 96.9 0.029 6.2E-07 62.2 16.7 32 4-35 570-604 (752)
355 PRK09853 putative selenate red 96.9 0.0025 5.5E-08 70.8 8.2 37 195-236 537-573 (1019)
356 KOG2852 Possible oxidoreductas 96.9 0.011 2.4E-07 55.1 10.9 39 1-39 7-53 (380)
357 PF06100 Strep_67kDa_ant: Stre 96.9 0.013 2.8E-07 59.4 12.4 40 4-43 2-47 (500)
358 PRK05868 hypothetical protein; 96.9 0.0028 6.2E-08 63.9 7.9 34 198-236 2-35 (372)
359 KOG2844 Dimethylglycine dehydr 96.9 0.0048 1E-07 63.9 9.3 59 74-155 184-242 (856)
360 COG3486 IucD Lysine/ornithine 96.9 0.0079 1.7E-07 59.0 10.3 46 95-155 294-339 (436)
361 PF05834 Lycopene_cycl: Lycope 96.8 0.0015 3.3E-08 65.8 5.3 45 328-372 95-143 (374)
362 PRK05192 tRNA uridine 5-carbox 96.8 0.0056 1.2E-07 64.5 9.3 33 198-235 5-37 (618)
363 PRK09897 hypothetical protein; 96.8 0.011 2.4E-07 62.0 11.2 36 198-236 2-37 (534)
364 TIGR01318 gltD_gamma_fam gluta 96.8 0.044 9.5E-07 57.0 15.6 33 4-36 282-317 (467)
365 PRK12814 putative NADPH-depend 96.8 0.051 1.1E-06 59.0 16.6 32 4-35 323-357 (652)
366 TIGR01790 carotene-cycl lycope 96.7 0.0048 1E-07 62.6 7.9 33 199-236 1-33 (388)
367 PF00732 GMC_oxred_N: GMC oxid 96.7 0.0014 3E-08 63.8 3.8 32 5-36 1-35 (296)
368 PRK07236 hypothetical protein; 96.6 0.007 1.5E-07 61.4 8.4 36 196-236 5-40 (386)
369 PRK12769 putative oxidoreducta 96.6 0.057 1.2E-06 58.8 15.7 32 4-35 468-502 (654)
370 PRK01438 murD UDP-N-acetylmura 96.6 0.0036 7.7E-08 65.5 6.1 31 4-34 16-48 (480)
371 KOG2311 NAD/FAD-utilizing prot 96.6 0.0097 2.1E-07 59.3 8.4 31 3-33 27-59 (679)
372 PLN02697 lycopene epsilon cycl 96.6 0.0061 1.3E-07 63.8 7.6 47 325-371 197-248 (529)
373 PRK02106 choline dehydrogenase 96.5 0.0025 5.4E-08 68.0 4.3 35 1-35 2-39 (560)
374 PRK07588 hypothetical protein; 96.5 0.0073 1.6E-07 61.4 7.4 33 199-236 2-34 (391)
375 PF07992 Pyr_redox_2: Pyridine 96.5 0.0015 3.2E-08 59.5 2.1 32 199-235 1-32 (201)
376 PLN02172 flavin-containing mon 96.4 0.0067 1.4E-07 62.8 7.0 32 4-35 204-237 (461)
377 PRK08163 salicylate hydroxylas 96.4 0.011 2.4E-07 60.1 8.3 35 197-236 4-38 (396)
378 PRK12809 putative oxidoreducta 96.4 0.12 2.6E-06 56.1 16.3 33 4-36 451-486 (639)
379 PF13738 Pyr_redox_3: Pyridine 96.3 0.01 2.2E-07 54.0 6.9 31 201-235 1-31 (203)
380 PRK08773 2-octaprenyl-3-methyl 96.3 0.0092 2E-07 60.7 7.2 49 324-372 117-170 (392)
381 COG2072 TrkA Predicted flavopr 96.3 0.028 6.2E-07 57.9 10.7 36 196-235 7-42 (443)
382 COG3075 GlpB Anaerobic glycero 96.3 0.0039 8.5E-08 59.2 3.9 33 3-35 1-35 (421)
383 TIGR00136 gidA glucose-inhibit 96.3 0.019 4.2E-07 60.4 9.2 32 199-235 2-33 (617)
384 TIGR03315 Se_ygfK putative sel 96.3 0.011 2.4E-07 66.0 7.8 36 196-236 536-571 (1012)
385 PRK09126 hypothetical protein; 96.2 0.024 5.3E-07 57.5 9.7 34 198-236 4-37 (392)
386 PRK07045 putative monooxygenas 96.2 0.0085 1.9E-07 60.8 6.0 34 198-236 6-39 (388)
387 PRK06834 hypothetical protein; 96.2 0.017 3.6E-07 60.5 8.3 34 198-236 4-37 (488)
388 KOG2960 Protein involved in th 96.2 0.0016 3.5E-08 57.6 0.5 39 5-43 77-120 (328)
389 TIGR03862 flavo_PP4765 unchara 96.2 0.028 6.1E-07 56.1 9.4 66 71-161 77-145 (376)
390 KOG3851 Sulfide:quinone oxidor 96.2 0.015 3.3E-07 55.0 6.8 35 342-376 114-150 (446)
391 KOG3855 Monooxygenase involved 96.2 0.05 1.1E-06 53.6 10.5 35 4-38 36-78 (481)
392 KOG0405 Pyridine nucleotide-di 96.1 0.042 9.2E-07 52.7 9.7 103 3-164 188-292 (478)
393 PRK07333 2-octaprenyl-6-methox 96.1 0.012 2.6E-07 60.0 6.9 49 324-372 115-168 (403)
394 TIGR01984 UbiH 2-polyprenyl-6- 96.1 0.02 4.4E-07 57.9 8.3 48 324-371 109-162 (382)
395 COG0492 TrxB Thioredoxin reduc 96.1 0.057 1.2E-06 52.4 10.9 93 4-155 143-237 (305)
396 PRK06753 hypothetical protein; 96.1 0.026 5.6E-07 56.9 9.0 33 199-236 2-34 (373)
397 TIGR01470 cysG_Nterm siroheme 96.1 0.0098 2.1E-07 54.3 5.3 35 195-234 7-41 (205)
398 KOG2853 Possible oxidoreductas 96.0 0.013 2.9E-07 55.8 5.9 33 4-36 86-124 (509)
399 PRK12775 putative trifunctiona 96.0 0.0094 2E-07 67.6 5.9 35 196-235 429-463 (1006)
400 PRK06184 hypothetical protein; 96.0 0.025 5.3E-07 59.6 8.7 34 198-236 4-37 (502)
401 PRK07608 ubiquinone biosynthes 96.0 0.015 3.2E-07 59.1 6.8 34 198-236 6-39 (388)
402 PRK05714 2-octaprenyl-3-methyl 96.0 0.034 7.4E-07 56.8 9.4 48 325-372 117-169 (405)
403 COG2303 BetA Choline dehydroge 96.0 0.0064 1.4E-07 64.3 4.0 35 1-35 4-40 (542)
404 COG0654 UbiH 2-polyprenyl-6-me 96.0 0.024 5.1E-07 57.6 8.0 48 324-371 108-162 (387)
405 KOG1800 Ferredoxin/adrenodoxin 96.0 0.019 4.1E-07 55.8 6.6 36 198-236 21-56 (468)
406 KOG4716 Thioredoxin reductase 95.9 0.015 3.2E-07 55.5 5.8 103 6-163 200-304 (503)
407 PRK08401 L-aspartate oxidase; 95.9 0.076 1.6E-06 55.3 11.7 33 198-235 2-34 (466)
408 PRK06567 putative bifunctional 95.9 0.012 2.5E-07 65.0 5.7 36 195-235 381-416 (1028)
409 PRK10157 putative oxidoreducta 95.8 0.012 2.6E-07 60.6 5.3 33 198-235 6-38 (428)
410 TIGR02032 GG-red-SF geranylger 95.8 0.024 5.2E-07 54.8 7.2 33 199-236 2-34 (295)
411 TIGR01372 soxA sarcosine oxida 95.8 0.06 1.3E-06 61.3 11.0 94 4-161 317-413 (985)
412 PRK07494 2-octaprenyl-6-methox 95.8 0.033 7.2E-07 56.5 8.2 34 198-236 8-41 (388)
413 PF01266 DAO: FAD dependent ox 95.8 0.023 5E-07 56.5 7.0 48 325-373 152-205 (358)
414 PRK08850 2-octaprenyl-6-methox 95.8 0.03 6.4E-07 57.2 7.9 47 325-371 116-168 (405)
415 PRK12771 putative glutamate sy 95.8 0.22 4.9E-06 53.2 14.8 31 4-34 267-300 (564)
416 PRK01438 murD UDP-N-acetylmura 95.8 0.013 2.8E-07 61.3 5.3 36 195-235 14-49 (480)
417 PRK13984 putative oxidoreducta 95.7 0.3 6.5E-06 52.7 15.7 20 4-23 418-437 (604)
418 TIGR03219 salicylate_mono sali 95.7 0.037 8.1E-07 56.7 8.3 34 199-236 2-35 (414)
419 PRK11445 putative oxidoreducta 95.6 0.021 4.4E-07 57.2 5.7 32 199-236 3-34 (351)
420 TIGR01988 Ubi-OHases Ubiquinon 95.6 0.034 7.3E-07 56.2 7.4 33 199-236 1-33 (385)
421 PRK08020 ubiF 2-octaprenyl-3-m 95.6 0.045 9.7E-07 55.6 8.3 33 198-235 6-38 (391)
422 PRK08849 2-octaprenyl-3-methyl 95.6 0.039 8.5E-07 55.9 7.8 32 199-235 5-36 (384)
423 COG3573 Predicted oxidoreducta 95.6 0.017 3.6E-07 55.0 4.5 45 4-49 5-53 (552)
424 PRK08244 hypothetical protein; 95.5 0.049 1.1E-06 57.2 8.6 34 198-236 3-36 (493)
425 KOG4254 Phytoene desaturase [C 95.5 0.009 2E-07 59.2 2.8 41 3-43 13-55 (561)
426 KOG1399 Flavin-containing mono 95.5 0.15 3.2E-06 52.2 11.3 40 196-240 5-48 (448)
427 TIGR01317 GOGAT_sm_gam glutama 95.4 0.79 1.7E-05 48.0 17.1 33 4-36 283-318 (485)
428 PRK06475 salicylate hydroxylas 95.4 0.048 1E-06 55.6 7.9 34 198-236 3-36 (400)
429 KOG0399 Glutamate synthase [Am 95.4 0.045 9.7E-07 60.1 7.6 38 194-236 1782-1819(2142)
430 PRK06718 precorrin-2 dehydroge 95.3 0.041 9E-07 50.1 6.1 34 195-233 8-41 (202)
431 TIGR03378 glycerol3P_GlpB glyc 95.3 0.018 3.8E-07 58.1 4.0 31 5-35 1-33 (419)
432 PRK05732 2-octaprenyl-6-methox 95.3 0.061 1.3E-06 54.7 8.0 32 198-234 4-38 (395)
433 TIGR02023 BchP-ChlP geranylger 95.2 0.035 7.7E-07 56.3 6.2 31 199-234 2-32 (388)
434 COG0445 GidA Flavin-dependent 95.2 0.032 7E-07 56.9 5.6 32 198-234 5-36 (621)
435 KOG1346 Programmed cell death 95.2 0.061 1.3E-06 52.8 7.2 98 4-161 347-451 (659)
436 PF04820 Trp_halogenase: Trypt 95.2 0.12 2.6E-06 53.5 9.9 50 323-372 157-212 (454)
437 PRK07190 hypothetical protein; 95.2 0.031 6.8E-07 58.4 5.7 34 198-236 6-39 (487)
438 TIGR01810 betA choline dehydro 95.1 0.017 3.7E-07 61.3 3.5 31 6-36 1-34 (532)
439 PLN02785 Protein HOTHEAD 95.1 0.022 4.7E-07 60.8 4.2 33 4-36 55-88 (587)
440 COG3634 AhpF Alkyl hydroperoxi 95.0 0.2 4.3E-06 48.3 9.8 100 3-162 353-455 (520)
441 KOG2755 Oxidoreductase [Genera 95.0 0.1 2.2E-06 48.3 7.6 28 346-373 79-106 (334)
442 PRK06126 hypothetical protein; 95.0 0.033 7.2E-07 59.3 5.2 35 197-236 7-41 (545)
443 PRK08013 oxidoreductase; Provi 94.9 0.026 5.6E-07 57.6 4.2 34 198-236 4-37 (400)
444 PF00743 FMO-like: Flavin-bind 94.8 0.084 1.8E-06 55.6 7.7 31 4-34 183-215 (531)
445 PRK05329 anaerobic glycerol-3- 94.8 0.18 4E-06 51.4 9.7 92 8-155 219-317 (422)
446 PLN00093 geranylgeranyl diphos 94.7 0.14 3.1E-06 52.9 8.8 34 198-236 40-73 (450)
447 TIGR02028 ChlP geranylgeranyl 94.6 0.1 2.2E-06 53.1 7.5 33 199-236 2-34 (398)
448 PRK05562 precorrin-2 dehydroge 94.5 0.077 1.7E-06 48.7 5.6 34 195-233 23-56 (223)
449 KOG2311 NAD/FAD-utilizing prot 94.4 0.15 3.3E-06 51.2 7.8 32 198-234 29-60 (679)
450 PF12831 FAD_oxidored: FAD dep 94.4 0.052 1.1E-06 55.9 4.9 33 199-236 1-33 (428)
451 TIGR00275 flavoprotein, HI0933 94.4 0.053 1.1E-06 55.2 4.9 31 201-236 1-31 (400)
452 PRK10015 oxidoreductase; Provi 94.4 0.04 8.7E-07 56.7 4.0 34 198-236 6-39 (429)
453 PRK06183 mhpA 3-(3-hydroxyphen 94.3 0.11 2.3E-06 55.3 7.3 35 197-236 10-44 (538)
454 PRK08132 FAD-dependent oxidore 94.3 0.078 1.7E-06 56.5 6.1 36 196-236 22-57 (547)
455 PRK07538 hypothetical protein; 94.3 0.18 3.9E-06 51.6 8.6 33 199-236 2-34 (413)
456 PRK06481 fumarate reductase fl 94.2 0.65 1.4E-05 48.9 12.7 34 198-236 62-95 (506)
457 COG0493 GltD NADPH-dependent g 94.1 0.043 9.3E-07 56.3 3.6 36 195-235 121-156 (457)
458 PF00996 GDI: GDP dissociation 94.1 0.053 1.1E-06 55.2 4.1 43 1-43 1-45 (438)
459 PF00890 FAD_binding_2: FAD bi 94.1 0.24 5.2E-06 50.8 9.1 33 199-236 1-33 (417)
460 KOG2614 Kynurenine 3-monooxyge 94.1 0.18 3.9E-06 49.9 7.4 33 198-235 3-35 (420)
461 PRK06617 2-octaprenyl-6-methox 93.9 0.17 3.7E-06 51.0 7.5 32 199-235 3-34 (374)
462 KOG1238 Glucose dehydrogenase/ 93.7 0.062 1.3E-06 56.1 3.7 35 3-37 56-93 (623)
463 KOG3923 D-aspartate oxidase [A 93.7 0.083 1.8E-06 49.8 4.1 32 3-34 2-42 (342)
464 TIGR01813 flavo_cyto_c flavocy 93.4 0.64 1.4E-05 48.0 10.9 33 199-236 1-34 (439)
465 COG1251 NirB NAD(P)H-nitrite r 93.3 0.16 3.4E-06 53.9 5.9 98 5-161 146-245 (793)
466 PRK06996 hypothetical protein; 93.2 0.18 3.8E-06 51.4 6.3 38 197-235 11-48 (398)
467 PF01210 NAD_Gly3P_dh_N: NAD-d 93.2 0.089 1.9E-06 45.8 3.5 30 6-35 1-32 (157)
468 TIGR01989 COQ6 Ubiquinone bios 93.0 0.092 2E-06 54.2 3.8 47 326-372 123-184 (437)
469 COG1148 HdrA Heterodisulfide r 92.8 0.25 5.5E-06 49.8 6.3 36 196-236 123-158 (622)
470 PF13241 NAD_binding_7: Putati 92.8 0.11 2.5E-06 41.5 3.3 32 3-34 6-39 (103)
471 COG0569 TrkA K+ transport syst 92.7 0.12 2.7E-06 47.9 3.8 32 5-36 1-34 (225)
472 PRK07530 3-hydroxybutyryl-CoA 92.6 0.15 3.2E-06 49.5 4.5 35 1-35 1-37 (292)
473 PRK05335 tRNA (uracil-5-)-meth 92.5 0.12 2.7E-06 52.2 3.8 35 198-237 3-37 (436)
474 TIGR01470 cysG_Nterm siroheme 92.4 0.18 3.9E-06 46.0 4.5 31 4-34 9-41 (205)
475 PF13450 NAD_binding_8: NAD(P) 92.4 0.12 2.6E-06 37.8 2.7 30 202-236 1-30 (68)
476 PF02558 ApbA: Ketopantoate re 92.3 0.15 3.3E-06 43.9 3.7 73 200-367 1-75 (151)
477 COG0644 FixC Dehydrogenases (f 92.2 0.36 7.7E-06 49.1 6.8 34 198-236 4-37 (396)
478 PF02737 3HCDH_N: 3-hydroxyacy 91.9 0.17 3.8E-06 45.1 3.7 30 6-35 1-32 (180)
479 COG1206 Gid NAD(FAD)-utilizing 91.9 0.72 1.6E-05 44.3 7.8 39 198-241 4-42 (439)
480 TIGR00137 gid_trmFO tRNA:m(5)U 91.9 0.15 3.3E-06 51.7 3.7 34 199-237 2-35 (433)
481 COG1206 Gid NAD(FAD)-utilizing 91.9 0.14 3.1E-06 48.9 3.1 35 3-37 2-38 (439)
482 PF13241 NAD_binding_7: Putati 91.8 0.068 1.5E-06 42.8 0.8 36 195-235 5-40 (103)
483 PRK06130 3-hydroxybutyryl-CoA 91.7 0.2 4.4E-06 49.0 4.3 35 1-35 1-37 (311)
484 PRK05945 sdhA succinate dehydr 91.7 2.5 5.4E-05 45.4 12.8 34 199-235 5-38 (575)
485 PRK06175 L-aspartate oxidase; 91.7 0.89 1.9E-05 46.8 9.1 32 199-236 6-37 (433)
486 TIGR00551 nadB L-aspartate oxi 91.6 1.4 3E-05 46.3 10.5 31 199-235 4-34 (488)
487 TIGR03197 MnmC_Cterm tRNA U-34 91.6 0.43 9.3E-06 48.2 6.6 58 75-156 133-190 (381)
488 PF01488 Shikimate_DH: Shikima 91.5 0.23 5E-06 42.0 3.8 38 194-235 9-46 (135)
489 PRK06719 precorrin-2 dehydroge 91.4 0.21 4.5E-06 43.5 3.5 34 194-232 10-43 (157)
490 PRK06719 precorrin-2 dehydroge 91.4 0.27 5.9E-06 42.7 4.2 30 4-33 13-44 (157)
491 KOG2820 FAD-dependent oxidored 91.3 2.3 5E-05 41.2 10.5 35 196-235 6-40 (399)
492 PRK02705 murD UDP-N-acetylmura 91.2 0.2 4.3E-06 52.1 3.8 32 6-37 2-35 (459)
493 PRK06069 sdhA succinate dehydr 91.2 3.1 6.7E-05 44.7 13.0 35 199-235 7-41 (577)
494 COG1086 Predicted nucleoside-d 91.2 0.27 5.8E-06 50.8 4.5 39 193-235 246-285 (588)
495 PRK07819 3-hydroxybutyryl-CoA 91.1 0.23 5E-06 48.0 3.9 32 5-36 6-39 (286)
496 PF01593 Amino_oxidase: Flavin 91.0 0.16 3.4E-06 51.9 2.8 30 14-43 1-32 (450)
497 PF03721 UDPG_MGDP_dh_N: UDP-g 91.0 0.2 4.2E-06 45.0 3.0 32 5-36 1-34 (185)
498 PLN02545 3-hydroxybutyryl-CoA 90.9 0.3 6.4E-06 47.5 4.5 35 1-35 1-37 (295)
499 PRK06854 adenylylsulfate reduc 90.8 2.4 5.2E-05 45.7 11.6 33 199-236 13-47 (608)
500 PRK06718 precorrin-2 dehydroge 90.8 0.33 7.1E-06 44.2 4.3 32 3-34 9-42 (202)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=8.1e-77 Score=612.26 Aligned_cols=449 Identities=34% Similarity=0.584 Sum_probs=262.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC---------CcCceeccCCCCccccCCCCCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC---------SYNSTKLQSHRSDYEFTDFPWPNRDDPG 72 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (511)
.++|+|||||+|||++|+.| .|++++|||+++++||+|+.+ .|+++.+|+|+.+|+|+|+|+|+.. +.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~-p~ 79 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY-PD 79 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC-SS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC-CC
Confidence 37899999999999999999 999999999999999999852 5899999999999999999999885 89
Q ss_pred CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 73 FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 73 ~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
|+++.++.+||+.|+++|++.++|+|+++|++|++.++. ...++|+|++++. ++..+..||+||+||
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~-----------~~~~~W~V~~~~~--g~~~~~~fD~Vvvat 146 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDF-----------SATGKWEVTTEND--GKEETEEFDAVVVAT 146 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTT-----------T-ETEEEEEETTT--TEEEEEEECEEEEEE
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeecccc-----------CCCceEEEEeecC--CeEEEEEeCeEEEcC
Confidence 999999999999999999999999999999999985331 1257899987543 444567899999999
Q ss_pred cccCCCCCCCC--CCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 153 GKYGDVPIIPA--FPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 153 G~~~~~p~~p~--~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
|++ ..|++|. +| |++.|.|+++||.+|++ ++.++||||+|||+|.||+|+|.+|+..++ +|++
T Consensus 147 G~~-~~P~~P~~~~~---G~e~F~G~i~HS~~yr~------~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~-----~v~~ 211 (531)
T PF00743_consen 147 GHF-SKPNIPEPSFP---GLEKFKGEIIHSKDYRD------PEPFKGKRVLVVGGGNSGADIAVELSRVAK-----KVYL 211 (531)
T ss_dssp -SS-SCESB-----C---TGGGHCSEEEEGGG--T------GGGGTTSEEEEESSSHHHHHHHHHHTTTSC-----CEEE
T ss_pred CCc-CCCCCChhhhh---hhhcCCeeEEccccCcC------hhhcCCCEEEEEeCCHhHHHHHHHHHHhcC-----CeEE
Confidence 999 6999995 88 99999999999999998 567999999999999999999999998765 4999
Q ss_pred EEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcc
Q 010421 231 IVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPF 310 (511)
Q Consensus 231 ~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 310 (511)
+.|++.|++|+....|.|.|..+..|+..++...... ++.....+..++..+....++|.|.+..
T Consensus 212 s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~---------------~~~~~~~~~~l~~~~~~~~~gl~p~~~~ 276 (531)
T PF00743_consen 212 STRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPE---------------SLSNWLLEKKLNKRFDHENYGLKPKHRF 276 (531)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred EEecccccccccccccccccccccccccccccccccc---------------cccccccccccccccccccccccccccc
Confidence 9999999999987778999887777765544321111 1111122223333445556788888765
Q ss_pred ccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEcCCcee-eccEEEEecCCCCcccccccCCCcccccccC
Q 010421 311 EEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKL-EADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~dG~~~-~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
.++.+++++++.+.+.+|+|+++. .|.++++++|+|+||+.+ ++|+||+||||+.+++|++ ..+ ...
T Consensus 277 -----~~~~~~ind~l~~~i~~G~i~vk~-~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~---~~~---~~~ 344 (531)
T PF00743_consen 277 -----FSQHPTINDELPNRIRSGRIKVKP-DIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLD---ESL---IKV 344 (531)
T ss_dssp ---------------------------EE--EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB----TTT---T-S
T ss_pred -----cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc---ccc---ccc
Confidence 456678999999999999999864 589999999999999985 6999999999999987653 222 222
Q ss_pred CCCcccceeeecCCCC--CceEEEeecccc-hhhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCC
Q 010421 390 PSGLLPLYRGTIHPLI--PNMAFVGYIESV-SNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKR 466 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~--pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (511)
.++...||++++++++ |+|+|||++... +.++++|+||||+|++|+|+.+||+.++|.+++.++.+++.+......+
T Consensus 345 ~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~~~~~~ 424 (531)
T PF00743_consen 345 DDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRFGFSPR 424 (531)
T ss_dssp -SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT--SHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3445679999999875 899999998764 4578999999999999999999999999999988876655443222234
Q ss_pred cceeeeccccHHHHHHhhCCCCCCchhhHhh-------hcccCCccCCC
Q 010421 467 HCISTFSINHSDEICEEMGWNAWRKRNWLLE-------AFSPYGSKDYE 508 (511)
Q Consensus 467 ~~~~~~~~~y~d~l~~~~g~~~~~~~~~~~~-------~~~~~~~~~y~ 508 (511)
+....++..|+|+||+++|+.|...+.|++| +|+|+.|++||
T Consensus 425 ~~~~~d~~~y~deLA~~iG~~P~~~~l~~~dp~l~~~~~~gp~~p~~YR 473 (531)
T PF00743_consen 425 HTIQVDYIDYMDELAREIGCKPNFWKLFLTDPKLARKLYFGPCTPYQYR 473 (531)
T ss_dssp HHHHHHHHHHHHTTS----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5566788999999999999999876655544 89999999998
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.6e-58 Score=470.99 Aligned_cols=366 Identities=27% Similarity=0.491 Sum_probs=292.2
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--------------------CcCceeccCCCCccc
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--------------------SYNSTKLQSHRSDYE 59 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--------------------~~~~~~~~~~~~~~~ 59 (511)
.+.++|+|||||+|||+||++| .|++|+|||+++.+||+|.+. .|.++++|+|+..|.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 3468999999999999999999 899999999999999999752 388899999999999
Q ss_pred cCCCCCCCC------CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEE
Q 010421 60 FTDFPWPNR------DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQ 133 (511)
Q Consensus 60 ~~~~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (511)
|+++|++.. ..+.|+++.++.+||+++++++++.++|+|+++|++|++. +++|+|++.
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~----------------~~~w~V~~~ 151 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV----------------DGKWRVQSK 151 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec----------------CCeEEEEEE
Confidence 999998652 1367999999999999999999998889999999999973 568999987
Q ss_pred eCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHH
Q 010421 134 THNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLA 213 (511)
Q Consensus 134 ~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a 213 (511)
++. +...+..||+||+|||++ ..|++|.+| |.+.|.|.++|++.|+. +..+++|+|+|||+|.||+|+|
T Consensus 152 ~~~-~~~~~~~~d~VIvAtG~~-~~P~~P~ip---G~~~f~G~~iHs~~yr~------~~~~~gk~VvVVG~G~Sg~diA 220 (461)
T PLN02172 152 NSG-GFSKDEIFDAVVVCNGHY-TEPNVAHIP---GIKSWPGKQIHSHNYRV------PDPFKNEVVVVIGNFASGADIS 220 (461)
T ss_pred cCC-CceEEEEcCEEEEeccCC-CCCcCCCCC---CcccCCceEEEecccCC------ccccCCCEEEEECCCcCHHHHH
Confidence 643 233357899999999998 599999999 99999999999999987 4568999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010421 214 KECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYL 293 (511)
Q Consensus 214 ~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (511)
.+|+..+.+ |+++.|++... ...
T Consensus 221 ~~L~~~a~~-----V~l~~r~~~~~--~~~-------------------------------------------------- 243 (461)
T PLN02172 221 RDIAKVAKE-----VHIASRASESD--TYE-------------------------------------------------- 243 (461)
T ss_pred HHHHHhCCe-----EEEEEeecccc--ccc--------------------------------------------------
Confidence 999988654 99999975310 000
Q ss_pred hccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEe-CCcEEEcCCceeeccEEEEecCCCCc
Q 010421 294 LWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFW-KGGLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 294 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~-~~~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
.++ .| ..++.+ ...|.++. +++|+|+||+.+++|.||+||||+++
T Consensus 244 --~~~------~~-------------------------~~~v~~-~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~ 289 (461)
T PLN02172 244 --KLP------VP-------------------------QNNLWM-HSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYH 289 (461)
T ss_pred --cCc------CC-------------------------CCceEE-CCcccceecCCeEEECCCCCccCCEEEECCcCCcc
Confidence 000 00 011111 11233333 34599999999999999999999999
Q ss_pred ccccccCCCcccccccCCCCcccceeeecCCCC-CceEEEeecccchhhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010421 373 KKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLI-PNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTS 451 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~-pnl~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~ 451 (511)
++|++-. ..+..+.+...+||++++++.. |+|+|||.+....+++++|+||+|+|++|+|+..||+.++|.++++
T Consensus 290 ~pfL~~~----~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~ 365 (461)
T PLN02172 290 FPFLETN----GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDIN 365 (461)
T ss_pred ccccCcc----cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence 8875411 1111233445579999999975 9999999987777889999999999999999999999999999998
Q ss_pred HHHHHHHHhccccCC--cceeeeccccHHHHHHhhCCCCCC
Q 010421 452 KEMEVMKQSTRFYKR--HCISTFSINHSDEICEEMGWNAWR 490 (511)
Q Consensus 452 ~~~~~~~~~~~~~~~--~~~~~~~~~y~d~l~~~~g~~~~~ 490 (511)
++.+.++... ..++ |.+...+..|+|+|++++|+.|..
T Consensus 366 ~~~~~~~~~g-~~~r~~h~~~~~~~~y~~~la~~~g~~~~~ 405 (461)
T PLN02172 366 AWYASLEALG-IPKRYTHKLGKIQSEYLNWIAEECGCPLVE 405 (461)
T ss_pred HHHHHHHhcC-CCCceeEEcCccHHHHHHHHHHHhCCCCCH
Confidence 8876554422 2222 344445789999999999998743
No 3
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-50 Score=404.04 Aligned_cols=388 Identities=30% Similarity=0.481 Sum_probs=294.8
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--------C-cCceeccCCCCccccCCCCCCCCCC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--------S-YNSTKLQSHRSDYEFTDFPWPNRDD 70 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (511)
.+.++|+|||||+|||++|+.| .|++++||||.+.+||+|.+. . |..+++|.|+..|+|+++|+++..+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 3578999999999999999999 999999999999999999985 4 9999999999999999999998865
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEE
Q 010421 71 PGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVV 150 (511)
Q Consensus 71 ~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVl 150 (511)
..||++.++.+||++||++|++.+.|+|+++|..++... +|.|.|...+..+. +....||.||+
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~---------------~gkW~V~~~~~~~~-~~~~ifd~VvV 147 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID---------------KGKWRVTTKDNGTQ-IEEEIFDAVVV 147 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc---------------CCceeEEEecCCcc-eeEEEeeEEEE
Confidence 777999999999999999999999999999999999841 37999999887644 45789999999
Q ss_pred eecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 151 CTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 151 AtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
|||++ ..|++|.+++. +++.|.|+++||++|+. ++.+.+|+|+|||+|.||+|++.+++..+.. |++
T Consensus 148 ctGh~-~~P~~P~~~g~-~~~~f~G~~iHS~~Yk~------~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~-----v~~ 214 (448)
T KOG1399|consen 148 CTGHY-VEPRIPQIPGP-GIESFKGKIIHSHDYKS------PEKFRDKVVLVVGCGNSGMDISLDLLRVAKE-----VHL 214 (448)
T ss_pred cccCc-CCCCCCcCCCC-chhhcCCcceehhhccC------cccccCceEEEECCCccHHHHHHHHHHhccC-----cce
Confidence 99999 58999999822 27799999999999997 5679999999999999999999999988754 787
Q ss_pred EEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcc
Q 010421 231 IVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPF 310 (511)
Q Consensus 231 ~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 310 (511)
..++ +.... .+
T Consensus 215 ~~~~-----~~~~~--~~-------------------------------------------------------------- 225 (448)
T KOG1399|consen 215 SVVS-----PKVHV--EP-------------------------------------------------------------- 225 (448)
T ss_pred eeec-----ccccc--cc--------------------------------------------------------------
Confidence 7662 10000 00
Q ss_pred ccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEc-CCceeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 311 EEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFE-DNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~-dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
......++..+.. |..+++++.++. ++....+|.||+||||...+++++ .... ....
T Consensus 226 -----------------~~~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~---~~~~-~~~~ 283 (448)
T KOG1399|consen 226 -----------------PEILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLE---TLGL-GTVR 283 (448)
T ss_pred -----------------cceeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEeecceec---cCCc-eeec
Confidence 0000112333344 788889996655 555688999999999999988653 2222 2334
Q ss_pred CCCcccceeeecCCCC-CceEEEeecccchhhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCcc
Q 010421 390 PSGLLPLYRGTIHPLI-PNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHC 468 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~-pnl~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (511)
++...++|++++++.+ |.+.++|.......++.+|+|++|++++++|+.++|+.++|..+.....+.++....-..+++
T Consensus 284 ~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~~~~~t 363 (448)
T KOG1399|consen 284 DNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLATGRHT 363 (448)
T ss_pred cCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhcccccccc
Confidence 5556789999998775 566776655443678999999999999999999999999998887766544433211102222
Q ss_pred eee---eccccHHHHHHhhCCCCCCchhhHhhhcccCCccCCCC
Q 010421 469 IST---FSINHSDEICEEMGWNAWRKRNWLLEAFSPYGSKDYED 509 (511)
Q Consensus 469 ~~~---~~~~y~d~l~~~~g~~~~~~~~~~~~~~~~~~~~~y~~ 509 (511)
... ....|...++...|+..+-....+.-|++|+++..|+-
T Consensus 364 ~~~~~~~l~~y~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~ 407 (448)
T KOG1399|consen 364 HVPDYDELAEYINWFADLCGFPKTEPWLAKEGWKGPCGLYAYGL 407 (448)
T ss_pred cccchHHHHHHhhhhhhhcCCCCcchHHhhhhccCccceeEeec
Confidence 111 23345555555555544322222334778988887763
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=358.47 Aligned_cols=388 Identities=27% Similarity=0.379 Sum_probs=284.4
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
+..+||+|||||+|||++|++| .|.+ ++||||++++||+|+.++||++++++|+..++|+++|++ + ...++...+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~-~~~~~~~~~ 83 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-W-DEAFAPFAE 83 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-C-cccCCCccc
Confidence 3568999999999999999999 8888 999999999999999999999999999999999999998 3 377888888
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.+|+.+++++|++..++.++++|..+++. + ....|+|+++++... ++.||+||+|||++ +.
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~--~------------~~~~w~V~~~~~~~~---~~~a~~vV~ATG~~-~~ 145 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWD--E------------DTKRWTVTTSDGGTG---ELTADFVVVATGHL-SE 145 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEec--C------------CCCeEEEEEcCCCee---eEecCEEEEeecCC-CC
Confidence 999999999999999999999999999883 2 267999999887521 17799999999999 69
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
|++|.|+ |.+.|.|.++||++|++ +..++||+|+|||+|+||+|+|.+|++.+++ ||+++|++.|+
T Consensus 146 P~iP~~~---G~~~f~g~~~HS~~~~~------~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~-----vt~~qRs~~~~ 211 (443)
T COG2072 146 PYIPDFA---GLDEFKGRILHSADWPN------PEDLRGKRVLVIGAGASAVDIAPELAEVGAS-----VTLSQRSPPHI 211 (443)
T ss_pred CCCCCCC---CccCCCceEEchhcCCC------ccccCCCeEEEECCCccHHHHHHHHHhcCCe-----eEEEecCCCce
Confidence 9999999 99999999999999998 4679999999999999999999999999754 99999999999
Q ss_pred ecCcccCCccchhhhhhhhhhhhcC--CCchh-HHHHHHH----hh-hhhhHHHHHHHHHHHHhccCC--cccCCCCCCC
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHG--SPNQS-LLRTLLC----LL-LSPLRRGVSKFIESYLLWKLP--LLKYGLKPDH 308 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~--~~~~~-~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~p~~ 308 (511)
+|...... +... .......+.. ..... +...... .. ...............+..... ..+..+.|.+
T Consensus 212 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 288 (443)
T COG2072 212 LPKPLLGE-EVGG--RLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDY 288 (443)
T ss_pred eccccccc-chHH--HHHHhhhCccceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCC
Confidence 99875211 1110 0011100000 00000 0000000 00 000111111222222222211 1222344543
Q ss_pred ccccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEcCCceeeccEEEEecCCCCc-ccccccCCCcccccc
Q 010421 309 PFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGK-KKLKAFLPEPFQSLL 387 (511)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~-~~~~~~~~~~~~~~~ 387 (511)
.. .|++...+..+++....+++.++...+..+++.++...+|.+++.|+++.+||+..+ .... ......
T Consensus 289 ~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~-----~~~~~~ 358 (443)
T COG2072 289 AP-----GDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGA-----AGGYGG 358 (443)
T ss_pred Cc-----cccccccccchhhhhhhcccceeeccccccCCcceecCCCccccceEEEecCCCchhheeee-----cccccc
Confidence 32 566666677899999999999999999999999998888888999999999999983 2211 111111
Q ss_pred cC-CCCcccceeeecCCCCCceEEEeecccchh----hhhHHHHHHHHHHHhcC
Q 010421 388 EH-PSGLLPLYRGTIHPLIPNMAFVGYIESVSN----LHTAELRSIWLSRLIDD 436 (511)
Q Consensus 388 ~~-~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~----~~~~e~qa~~~a~~l~g 436 (511)
.. .......|+++...+.||+++++....... ....|.+.++++..+..
T Consensus 359 ~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (443)
T COG2072 359 DPWDKDAPLAYKGLALSGGPNLFLIGGPTKASGGLKAALRAELRITLLADAIAH 412 (443)
T ss_pred ccccccccceeccccccCCCceEEecCccCCcccchhHHhhhhhhhHHHHHHHh
Confidence 11 112344688888899999999975543221 24677788888777654
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.97 E-value=1.5e-30 Score=239.86 Aligned_cols=190 Identities=37% Similarity=0.605 Sum_probs=134.2
Q ss_pred EEECCCHHHHHHHHhc--cCCC-cEEEcCCCCcCccccCCCcCceeccCCCCcc---ccCCCCCCC------C-CCCCCC
Q 010421 8 AIIGAGVSGLAAVKQL--RHHN-PVVFEASDSIGGIWKSCSYNSTKLQSHRSDY---EFTDFPWPN------R-DDPGFP 74 (511)
Q Consensus 8 ~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~---~~~~~~~~~------~-~~~~~~ 74 (511)
+||||||+||++|.+| .|.+ ++|||+++.+||.|.. .++..++..|.... .++++.... + ....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR-YYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC-H-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE-eCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999 8998 9999999999999996 55555554444332 222221110 0 035678
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+++++.+|++.+++++++ .++++++|+++++. ++.|+|+++++. ++.||+||+|||.
T Consensus 80 ~~~~v~~yl~~~~~~~~l--~i~~~~~V~~v~~~----------------~~~w~v~~~~~~-----~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGL--EIRFNTRVESVRRD----------------GDGWTVTTRDGR-----TIRADRVVLATGH 136 (203)
T ss_dssp BHHHHHHHHHHHHHHTTG--GEETS--EEEEEEE----------------TTTEEEEETTS------EEEEEEEEE---S
T ss_pred CHHHHHHHHHHHHhhcCc--ccccCCEEEEEEEe----------------ccEEEEEEEecc-----eeeeeeEEEeeec
Confidence 999999999999999999 69999999999994 445999998774 7899999999999
Q ss_pred cCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 155 YGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 155 ~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
. +.|+.|.++ | ..+. ..+|+.++.+ +..+++|+|+|||+|.||+|+|..|++.+. +|++++|+
T Consensus 137 ~-~~p~~p~~~---g-~~~~-~~~h~~~~~~------~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~-----~V~~~~R~ 199 (203)
T PF13738_consen 137 Y-SHPRIPDIP---G-SAFR-PIIHSADWRD------PEDFKGKRVVVVGGGNSAVDIAYALAKAGK-----SVTLVTRS 199 (203)
T ss_dssp S-CSB---S-T---T-GGCS-EEEEGGG-ST------TGGCTTSEEEEE--SHHHHHHHHHHTTTCS-----EEEEEESS
T ss_pred c-CCCCccccc---c-cccc-ceEehhhcCC------hhhcCCCcEEEEcChHHHHHHHHHHHhhCC-----EEEEEecC
Confidence 8 589999998 6 2233 7899999876 356889999999999999999999998874 59999999
Q ss_pred Ccee
Q 010421 235 THWT 238 (511)
Q Consensus 235 ~~~~ 238 (511)
|.|+
T Consensus 200 ~~~~ 203 (203)
T PF13738_consen 200 PIWY 203 (203)
T ss_dssp ----
T ss_pred CCCC
Confidence 9885
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.97 E-value=2.3e-28 Score=239.31 Aligned_cols=282 Identities=21% Similarity=0.289 Sum_probs=195.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
+||+|||||++|+++|..| .|++|+|+|+++ .||.|.... ....++.+ .....+.++..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~-------~~~~~~~~~~~~ 62 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF-------PEGISGPELMEK 62 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC-------CCCCChHHHHHH
Confidence 5899999999999999999 899999999975 777765411 00111111 122356789999
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP 162 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p 162 (511)
++.+++++++ .+++ ++|+++++. ++.|.|.+.++. ++.||+||+|||. .|+.|
T Consensus 63 l~~~~~~~gv--~~~~-~~v~~v~~~----------------~~~~~v~~~~~~-----~~~~d~liiAtG~---~~~~~ 115 (300)
T TIGR01292 63 MKEQAVKFGA--EIIY-EEVIKVDLS----------------DRPFKVKTGDGK-----EYTAKAVIIATGA---SARKL 115 (300)
T ss_pred HHHHHHHcCC--eEEE-EEEEEEEec----------------CCeeEEEeCCCC-----EEEeCEEEECCCC---CcccC
Confidence 9999999998 7777 899999873 456777765543 7999999999994 57777
Q ss_pred CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 163 AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 163 ~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
.+| |.+.|.+..+|...+.. .....+++|+|||+|.+|+|+|..|++.+. +|+++.|++.+..
T Consensus 116 ~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~-----~V~~v~~~~~~~~--- 178 (300)
T TIGR01292 116 GIP---GEDEFLGRGVSYCATCD------GPFFKNKEVAVVGGGDSAIEEALYLTRIAK-----KVTLVHRRDKFRA--- 178 (300)
T ss_pred CCC---ChhhcCCccEEEeeecC------hhhcCCCEEEEECCChHHHHHHHHHHhhcC-----EEEEEEeCcccCc---
Confidence 788 66656555555443332 234578999999999999999999988764 4999999764210
Q ss_pred ccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccccc
Q 010421 243 RIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIM 322 (511)
Q Consensus 243 ~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~ 322 (511)
.
T Consensus 179 ~------------------------------------------------------------------------------- 179 (300)
T TIGR01292 179 E------------------------------------------------------------------------------- 179 (300)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCchhhhhccC-eEEEEeCc-eeEEeCCc----EEEc---CC--ceeeccEEEEecCCCCcccccccCCCcccccccCCC
Q 010421 323 PEGFFSEAEKG-KIVFKRAS-KWWFWKGG----LEFE---DN--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPS 391 (511)
Q Consensus 323 ~~~~~~~l~~g-~v~v~~~~-i~~~~~~~----v~~~---dG--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
+.+.+.+++. +|+++.+. +.++++++ +++. +| .++++|.||+|||++++..+.+.+ +..+++
T Consensus 180 -~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~------~~~~~~ 252 (300)
T TIGR01292 180 -KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL------LELDEG 252 (300)
T ss_pred -HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh------heecCC
Confidence 0001122232 56666553 66666543 4443 24 458999999999999987654321 111334
Q ss_pred CcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHhc
Q 010421 392 GLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 392 ~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l~ 435 (511)
+.+.+... ..++.||+|++|.... ......+..|++.+|..+.
T Consensus 253 g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 253 GYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred CcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 45555555 4468999999998775 3446678889999888765
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=99.95 E-value=2.3e-26 Score=227.03 Aligned_cols=269 Identities=18% Similarity=0.327 Sum_probs=185.2
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
+..+||+||||||+||+||..| .|+++++||+ ...||.+.... . +.++ |. .....+.+++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~~~----------~---~~~~--~~--~~~~~~~~~~ 65 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTT----------E---VENW--PG--DPNDLTGPLL 65 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceecCc----------e---ECCC--CC--CCCCCCHHHH
Confidence 3568999999999999999999 8899999996 46788665410 0 1111 11 1234567788
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+++..+++.++. .++++ +|..|+.. ++.|+++...+ .+.||+||+|||. .|
T Consensus 66 ~~~~~~~~~~~~~--~~~~~-~v~~v~~~----------------~~~~~v~~~~~------~~~~d~vilAtG~---~~ 117 (321)
T PRK10262 66 MERMHEHATKFET--EIIFD-HINKVDLQ----------------NRPFRLTGDSG------EYTCDALIIATGA---SA 117 (321)
T ss_pred HHHHHHHHHHCCC--EEEee-EEEEEEec----------------CCeEEEEecCC------EEEECEEEECCCC---CC
Confidence 9999999998886 56664 67777762 45576654321 6899999999994 57
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
+.|++| |.+.|.++.+|...+.. .....+++|+|||+|.+|+|+|..|++.+.+ |+++.|++.+
T Consensus 118 ~~~~i~---g~~~~~~~~v~~~~~~~------~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~-----Vtlv~~~~~~-- 181 (321)
T PRK10262 118 RYLGLP---SEEAFKGRGVSACATCD------GFFYRNQKVAVIGGGNTAVEEALYLSNIASE-----VHLIHRRDGF-- 181 (321)
T ss_pred CCCCCC---CHHHcCCCcEEEeecCC------HHHcCCCEEEEECCCHHHHHHHHHHHhhCCE-----EEEEEECCcc--
Confidence 888888 77777777777766644 2346799999999999999999999988654 9999998642
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
+... .
T Consensus 182 ~~~~--------~------------------------------------------------------------------- 186 (321)
T PRK10262 182 RAEK--------I------------------------------------------------------------------- 186 (321)
T ss_pred CCCH--------H-------------------------------------------------------------------
Confidence 1000 0
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEEcCC------ceeeccEEEEecCCCCcccccccCCCcccccc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEFEDN------TKLEADVVILCTGYDGKKKLKAFLPEPFQSLL 387 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~~dG------~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~ 387 (511)
..+.+.+.+++.+|+++.+. +.+++++ +|+++++ +++++|.||+|+|++++..+.+. .+ .
T Consensus 187 --~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~---~l-~-- 258 (321)
T PRK10262 187 --LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG---QL-E-- 258 (321)
T ss_pred --HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc---cc-c--
Confidence 00011234667788888765 7788765 3666543 35999999999999999765431 11 0
Q ss_pred cCCCCcccceee----ecCCCCCceEEEeeccc
Q 010421 388 EHPSGLLPLYRG----TIHPLIPNMAFVGYIES 416 (511)
Q Consensus 388 ~~~~~~~~ly~~----~~~~~~pnl~~iG~~~~ 416 (511)
..++.+.+..+ ...++.||+|++|....
T Consensus 259 -~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~ 290 (321)
T PRK10262 259 -LENGYIKVQSGIHGNATQTSIPGVFAAGDVMD 290 (321)
T ss_pred -ccCCEEEECCCCcccccccCCCCEEECeeccC
Confidence 11122222221 23578999999998764
No 8
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.94 E-value=4.6e-26 Score=233.74 Aligned_cols=293 Identities=16% Similarity=0.187 Sum_probs=186.9
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++|+|||||++|+.+|.+| .+.+|+|+|+++.++ |..+. +|...........+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-------~~~~~--------------lp~~~~~~~~~~~~~~ 60 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FANCA--------------LPYYIGEVVEDRKYAL 60 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-------cccCC--------------cchhhcCccCCHHHcc
Confidence 4899999999999999999 468999999987652 11100 0100001111122222
Q ss_pred HH-HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 81 DY-LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 81 ~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+ .+.+.++.++ .++++++|++|+.. +. +|.+.++.+++..++.||+||+||| +.|
T Consensus 61 ~~~~~~~~~~~~i--~v~~~~~V~~Id~~----------------~~--~v~~~~~~~~~~~~~~yd~lviAtG---s~~ 117 (438)
T PRK13512 61 AYTPEKFYDRKQI--TVKTYHEVIAINDE----------------RQ--TVTVLNRKTNEQFEESYDKLILSPG---ASA 117 (438)
T ss_pred cCCHHHHHHhCCC--EEEeCCEEEEEECC----------------CC--EEEEEECCCCcEEeeecCEEEECCC---CCC
Confidence 22 1334456677 78888999999873 11 4666665433444578999999999 456
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhh-hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEA-ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
+.|.++ +.. ++...++.+..... ......+++|+|||+|.+|+|+|..|++.+.+ ||++.|++. +
T Consensus 118 ~~~~~~---~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~-----Vtli~~~~~-l 183 (438)
T PRK13512 118 NSLGFE---SDI-----TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLH-----PTLIHRSDK-I 183 (438)
T ss_pred CCCCCC---CCC-----eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCc-----EEEEecccc-c
Confidence 766554 221 22222221110000 00123468999999999999999999988754 999999875 2
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
++..+ . .
T Consensus 184 ~~~~d-------~----~-------------------------------------------------------------- 190 (438)
T PRK13512 184 NKLMD-------A----D-------------------------------------------------------------- 190 (438)
T ss_pred chhcC-------H----H--------------------------------------------------------------
Confidence 23211 0 0
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccce
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLY 397 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly 397 (511)
+.+.+.+.+++.+|+++.+. +.++++..|++++|+++++|.||+|||++++..+++.. ++..++++.+.+.
T Consensus 191 ---~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~-----gl~~~~~G~i~Vd 262 (438)
T PRK13512 191 ---MNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESS-----NIKLDDKGFIPVN 262 (438)
T ss_pred ---HHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhc-----CcccCCCCcEEEC
Confidence 00111234556678888765 88888888999999999999999999999997653311 1112334445555
Q ss_pred eeecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCC
Q 010421 398 RGTIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 398 ~~~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 437 (511)
..+ .++.||+|++|..... ...+.+..||+.+|..+.|.
T Consensus 263 ~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 263 DKF-ETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred CCc-ccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 543 3578999999976531 12345788999999999874
No 9
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.94 E-value=1.8e-26 Score=226.23 Aligned_cols=301 Identities=20% Similarity=0.234 Sum_probs=197.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
++++|||||||++|+.+|+.| . +.+|+++|+++.. .+.. +-........+..+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h-------l~~p----------------lL~eva~g~l~~~~ 58 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH-------LFTP----------------LLYEVATGTLSESE 58 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc-------ccch----------------hhhhhhcCCCChhh
Confidence 467999999999999999999 3 3789999998654 1111 11111122333445
Q ss_pred HHHHHHHHHHhcCCCCceEe-eeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC
Q 010421 79 ILDYLESYAKHFDVFKCVRF-NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~ 157 (511)
+.--++..+++.+ .+.| ..+|++|+.. ++ +|++.+.. .+.||+||+|+| +
T Consensus 59 i~~p~~~~~~~~~---~v~~~~~~V~~ID~~--~k----------------~V~~~~~~-----~i~YD~LVvalG---s 109 (405)
T COG1252 59 IAIPLRALLRKSG---NVQFVQGEVTDIDRD--AK----------------KVTLADLG-----EISYDYLVVALG---S 109 (405)
T ss_pred eeccHHHHhcccC---ceEEEEEEEEEEccc--CC----------------EEEeCCCc-----cccccEEEEecC---C
Confidence 5555555555443 2333 4589999983 21 58887743 799999999999 5
Q ss_pred CCCCCCCCCCCCCCcccceEEecccc---Cc-cch--hhhhhcc---CCCcEEEECCCCCHHHHHHHHHHhcCC------
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDY---CK-LDK--EAASQLL---KDKKVAVVGFKKSAIDLAKECAESNQG------ 222 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~---~~-~~~--~~~~~~~---~~k~V~VvG~G~sg~d~a~~l~~~~~~------ 222 (511)
.++.+++| |...+.-.+-...+- +. +.. +...... .--.|+|+|||+||+|+|.+|++....
T Consensus 110 ~~~~fgi~---G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~ 186 (405)
T COG1252 110 ETNYFGIP---GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFR 186 (405)
T ss_pred cCCcCCCC---CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhc
Confidence 67888888 644332111111111 00 000 0000011 112699999999999999999976431
Q ss_pred --CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcc
Q 010421 223 --PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLL 300 (511)
Q Consensus 223 --~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
+..-+|+++.+.|. ++|... .+.+
T Consensus 187 ~~~~~~~V~LVea~p~-ILp~~~-----------~~l~------------------------------------------ 212 (405)
T COG1252 187 VDPSELRVILVEAGPR-ILPMFP-----------PKLS------------------------------------------ 212 (405)
T ss_pred CCccccEEEEEccCch-hccCCC-----------HHHH------------------------------------------
Confidence 11126889988876 555543 1100
Q ss_pred cCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCce-eeccEEEEecCCCCccccccc
Q 010421 301 KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTK-LEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 301 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~-~~~D~VI~aTG~~~~~~~~~~ 378 (511)
+...+.+++-+|++..+. |+++++++|++++|.+ +++|.||||+|.+++....++
T Consensus 213 -----------------------~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 213 -----------------------KYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred -----------------------HHHHHHHHHCCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 011135677789999886 9999999999999995 999999999999998643321
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-------chhhhhHHHHHHHHHHHhcCCCCC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-------VSNLHTAELRSIWLSRLIDDKFKL 440 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-------~~~~~~~e~qa~~~a~~l~g~~~l 440 (511)
.+...+..+.+.+...+..+++||+|++|.+.. +.+.+.|+.|++++|++|..+...
T Consensus 270 -----~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 270 -----SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred -----ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 111114456677888888999999999996542 234578999999999988665543
No 10
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.94 E-value=1.6e-25 Score=234.22 Aligned_cols=279 Identities=15% Similarity=0.137 Sum_probs=192.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+||||||+|++||.+| .|++++|+++. +||+|.. .+ ....++ ...+..+.++.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~-~~------------~~~~~~-----~~~~~~~~~l~~ 270 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLD-TM------------GIENFI-----SVPETEGPKLAA 270 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeec-cC------------cccccC-----CCCCCCHHHHHH
Confidence 47999999999999999999 99999999874 8998864 11 000010 112346788999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++...++++++ .++++++|+++++. ++.|.|.+.++. .+.||.||+|||. .|+.
T Consensus 271 ~l~~~~~~~gv--~i~~~~~V~~I~~~----------------~~~~~V~~~~g~-----~i~a~~vViAtG~---~~r~ 324 (517)
T PRK15317 271 ALEEHVKEYDV--DIMNLQRASKLEPA----------------AGLIEVELANGA-----VLKAKTVILATGA---RWRN 324 (517)
T ss_pred HHHHHHHHCCC--EEEcCCEEEEEEec----------------CCeEEEEECCCC-----EEEcCEEEECCCC---CcCC
Confidence 99999999998 78889999999872 456788775553 7899999999995 5677
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|++| |.+.|.+..+|.....+ ...+.+|+|+|||+|.+|+|+|..|+..+. +|+++.|.+... +
T Consensus 325 ~~ip---G~~~~~~~~v~~~~~~~------~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~-----~Vtlv~~~~~l~-~- 388 (517)
T PRK15317 325 MNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVK-----HVTVLEFAPELK-A- 388 (517)
T ss_pred CCCC---CHHHhcCceEEEeeccC------chhcCCCEEEEECCCHHHHHHHHHHHhcCC-----EEEEEEECcccc-c-
Confidence 8888 76667666666554332 234678999999999999999999998765 499999876421 0
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
. .
T Consensus 389 -~-------~---------------------------------------------------------------------- 390 (517)
T PRK15317 389 -D-------Q---------------------------------------------------------------------- 390 (517)
T ss_pred -c-------H----------------------------------------------------------------------
Confidence 0 0
Q ss_pred cCCchhhhhc-cCeEEEEeCc-eeEEeCC-----cEEEc---CCc--eeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 322 MPEGFFSEAE-KGKIVFKRAS-KWWFWKG-----GLEFE---DNT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 322 ~~~~~~~~l~-~g~v~v~~~~-i~~~~~~-----~v~~~---dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
.+.+.+. ..+|+++.+. +.++.++ +|++. +|+ ++++|.|++|+|++++..+.+.. +..+
T Consensus 391 ---~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~------v~~~ 461 (517)
T PRK15317 391 ---VLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT------VELN 461 (517)
T ss_pred ---HHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh------eeeC
Confidence 0001122 2467777765 6666655 25554 343 48999999999999987654311 1113
Q ss_pred CCCcccceeeecCCCCCceEEEeecccch--hhhhHHHHHHHHHH
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIESVS--NLHTAELRSIWLSR 432 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~~~--~~~~~e~qa~~~a~ 432 (511)
+++.+.+...+ .++.||||++|...... ....+..++.-+|.
T Consensus 462 ~~g~i~vd~~l-~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~ 505 (517)
T PRK15317 462 RRGEIIVDARG-ATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAAL 505 (517)
T ss_pred CCCcEEECcCC-CCCCCCEEECccccCCCCCEEEEhhhhHHHHHH
Confidence 33444444443 36889999999876532 13344455554443
No 11
>PRK06116 glutathione reductase; Validated
Probab=99.94 E-value=1.9e-25 Score=230.61 Aligned_cols=302 Identities=19% Similarity=0.206 Sum_probs=186.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-CCcCceeccCCCCcc----c-cCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHRSDY----E-FTDFPWPNRDDPG 72 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~ 72 (511)
|+..+||+||||||+|++||..| .|++|+|+|+. .+||+|.. .+.|...+....... . ...+.+... ..
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~--~~ 77 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT--EN 77 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC--CC
Confidence 66678999999999999999999 89999999995 89998754 123332111000000 0 000111100 00
Q ss_pred CCChHHHHHH-----------HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 73 FPSYTEILDY-----------LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 73 ~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
.....++.++ +....++.++ .+..+ ++..++. .+|++ ++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~v~~--------------------~~v~~-~g~----- 128 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGV--DLIEG-FARFVDA--------------------HTVEV-NGE----- 128 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC--------------------CEEEE-CCE-----
Confidence 1122222222 2233334455 44443 3443332 24666 332
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
.+.||+||+||| ..|..|.+| |.+ .++++.++... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 129 ~~~~d~lViATG---s~p~~p~i~---g~~----~~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~l~~~g~ 191 (450)
T PRK06116 129 RYTADHILIATG---GRPSIPDIP---GAE----YGITSDGFFAL-------EELPKRVAVVGAGYIAVEFAGVLNGLGS 191 (450)
T ss_pred EEEeCEEEEecC---CCCCCCCCC---Ccc----eeEchhHhhCc-------cccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 789999999999 468888888 654 24454444331 1346899999999999999999998875
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ |+++.|.+.. ++... . .
T Consensus 192 ~-----Vtlv~~~~~~-l~~~~-------~----~--------------------------------------------- 209 (450)
T PRK06116 192 E-----THLFVRGDAP-LRGFD-------P----D--------------------------------------------- 209 (450)
T ss_pred e-----EEEEecCCCC-ccccC-------H----H---------------------------------------------
Confidence 4 9999997742 22211 0 0
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc---EEEcCCceeeccEEEEecCCCCcccc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG---LEFEDNTKLEADVVILCTGYDGKKKL 375 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~---v~~~dG~~~~~D~VI~aTG~~~~~~~ 375 (511)
+...+.+.+++.+|+++.+. +.+++. ++ |.+.+|+++++|.||+|||++++...
T Consensus 210 --------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 210 --------------------IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred --------------------HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 00111233455667777764 677753 33 56678988999999999999998763
Q ss_pred cccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 376 KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+.. .-.++..+.++.+.+..++ .++.||+|++|.... ....+.|..|++.+|..+.|.
T Consensus 270 l~l---~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 270 LGL---ENAGVKLNEKGYIIVDEYQ-NTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred CCc---hhcCceECCCCcEecCCCC-CcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 211 1011111334445555443 367899999998764 334568999999999998774
No 12
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.94 E-value=4.2e-25 Score=229.00 Aligned_cols=307 Identities=14% Similarity=0.131 Sum_probs=189.1
Q ss_pred CCC-CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc-------ccCCCCCCCCC
Q 010421 1 MAN-YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY-------EFTDFPWPNRD 69 (511)
Q Consensus 1 m~~-~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~ 69 (511)
|++ .+||+||||||+|+.+|..| .|.+|+|+|+++.+||+|... ..|...+......+ .|..++.
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~---- 76 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRV---- 76 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCC----
Confidence 443 68999999999999999999 899999999988999998552 33332221111100 1111111
Q ss_pred CCCCCChHHHHHHH-----------HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCC
Q 010421 70 DPGFPSYTEILDYL-----------ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSN 138 (511)
Q Consensus 70 ~~~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 138 (511)
....+..++.++. ....++.++ .++.+ ++..++ .+.++|...++
T Consensus 77 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~~------------------~~~~~v~~~~g--- 131 (461)
T PRK05249 77 -KLRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQG-RARFVD------------------PHTVEVECPDG--- 131 (461)
T ss_pred -cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEec------------------CCEEEEEeCCC---
Confidence 1122344444443 333344444 44433 333332 23344443322
Q ss_pred ceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHH
Q 010421 139 SIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAE 218 (511)
Q Consensus 139 ~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~ 218 (511)
...++.||+||+||| +.|..|.++ +.+. ..++++.+.... ...+++|+|||+|.+|+|+|..+++
T Consensus 132 ~~~~~~~d~lviATG---s~p~~p~~~---~~~~--~~v~~~~~~~~~-------~~~~~~v~IiGgG~~g~E~A~~l~~ 196 (461)
T PRK05249 132 EVETLTADKIVIATG---SRPYRPPDV---DFDH--PRIYDSDSILSL-------DHLPRSLIIYGAGVIGCEYASIFAA 196 (461)
T ss_pred ceEEEEcCEEEEcCC---CCCCCCCCC---CCCC--CeEEcHHHhhch-------hhcCCeEEEECCCHHHHHHHHHHHH
Confidence 233689999999999 467777665 3221 135555444432 2357999999999999999999998
Q ss_pred hcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCC
Q 010421 219 SNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLP 298 (511)
Q Consensus 219 ~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
.+.+ |+++.|++. ++|..+ . .
T Consensus 197 ~g~~-----Vtli~~~~~-~l~~~d-------~----~------------------------------------------ 217 (461)
T PRK05249 197 LGVK-----VTLINTRDR-LLSFLD-------D----E------------------------------------------ 217 (461)
T ss_pred cCCe-----EEEEecCCC-cCCcCC-------H----H------------------------------------------
Confidence 8765 999999875 333221 0 0
Q ss_pred cccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCc--EEEcCCceeeccEEEEecCCCCcc
Q 010421 299 LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGG--LEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 299 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
+.+.+.+.+++.+|+++.+. +.+++ +++ +++++|+++++|.||+|+|++++.
T Consensus 218 -----------------------~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 218 -----------------------ISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred -----------------------HHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 00011123445567777664 66665 333 446688889999999999999997
Q ss_pred cccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 374 KLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.++.. ...++..++.+.+.+..++ .++.||+|++|.... +.....|..|++.+|..+.|.
T Consensus 275 ~~l~l---~~~g~~~~~~G~i~vd~~~-~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 275 DGLNL---ENAGLEADSRGQLKVNENY-QTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred cCCCc---hhhCcEecCCCcEeeCCCc-ccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 64211 1111111333444444433 357899999998764 334568999999999999875
No 13
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.94 E-value=2.5e-25 Score=228.80 Aligned_cols=300 Identities=19% Similarity=0.225 Sum_probs=181.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPS 75 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (511)
+.+||+||||||+|+.||..+ .|.+|+|+|+ ..+||+|... ..|...+......+. ...+.++... .....
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~~~~ 78 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNL-ENTFN 78 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCC-cCccC
Confidence 468999999999999999999 8999999999 5799987641 333321111111100 1111111110 00112
Q ss_pred hHHHHHH-----------HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 76 YTEILDY-----------LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 76 ~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
..++.++ +....++.++ .+..++.+. .+ +. +|.+ ++. .+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~~-~~------------------~~--~v~v-~~~-----~~~ 129 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHARF-TK------------------DG--TVEV-NGR-----DYT 129 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-cc------------------CC--EEEE-CCE-----EEE
Confidence 2333333 2233334444 455554321 11 11 3544 221 689
Q ss_pred eCEEEEeecccCCCCCCC-CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCC
Q 010421 145 FEFLVVCTGKYGDVPIIP-AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGP 223 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p-~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 223 (511)
||+||+||| +.|..| .+| |.+. .+++.++..+. ..+++|+|||+|.+|+|+|..|+..+.+
T Consensus 130 ~d~vIiAtG---s~p~~p~~i~---g~~~----~~~~~~~~~~~-------~~~~~vvIIGgG~iG~E~A~~l~~~g~~- 191 (450)
T TIGR01421 130 APHILIATG---GKPSFPENIP---GAEL----GTDSDGFFALE-------ELPKRVVIVGAGYIAVELAGVLHGLGSE- 191 (450)
T ss_pred eCEEEEecC---CCCCCCCCCC---CCce----eEcHHHhhCcc-------ccCCeEEEECCCHHHHHHHHHHHHcCCc-
Confidence 999999999 467888 788 6542 23333333221 2468999999999999999999988765
Q ss_pred CCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCC
Q 010421 224 EGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYG 303 (511)
Q Consensus 224 ~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (511)
||++.|.+.. ++..+ ..+
T Consensus 192 ----Vtli~~~~~i-l~~~d-------~~~-------------------------------------------------- 209 (450)
T TIGR01421 192 ----THLVIRHERV-LRSFD-------SMI-------------------------------------------------- 209 (450)
T ss_pred ----EEEEecCCCC-CcccC-------HHH--------------------------------------------------
Confidence 9999998752 23221 000
Q ss_pred CCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc---EEEcCC-ceeeccEEEEecCCCCccccc
Q 010421 304 LKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG---LEFEDN-TKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 304 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~---v~~~dG-~~~~~D~VI~aTG~~~~~~~~ 376 (511)
.+.+.+.+++.+|+++.+. +.+++. ++ +++++| +++++|.||+|+|++|+..++
T Consensus 210 -------------------~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l 270 (450)
T TIGR01421 210 -------------------SETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGL 270 (450)
T ss_pred -------------------HHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccC
Confidence 0011123445567777764 666653 22 567788 569999999999999997642
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g 436 (511)
.+ .-.++..+.++.+.+... ..++.||+|++|.... ....+.|..|++.+|..+.+
T Consensus 271 ~l---~~~g~~~~~~G~i~vd~~-~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 271 GL---ENVGIKLNEKGQIIVDEY-QNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred Cc---cccCcEECCCCcEEeCCC-CcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 11 111111133344444444 3467899999998654 33467899999999998875
No 14
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.94 E-value=9.9e-26 Score=221.39 Aligned_cols=229 Identities=24% Similarity=0.318 Sum_probs=136.8
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCcCccccCC-CcCceeccCCC-----------CccccCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHR-----------SDYEFTDFPWPNR 68 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~ 68 (511)
.+|+++||.||++|+.|..| ...++..||+.+.+ .|+.. ..++.++++|. .-|+|..+-....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 47999999999999999999 56899999998766 68763 24666665542 2222211100000
Q ss_pred -------CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 69 -------DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 69 -------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
....+|++.++.+|+++++++++. .++|+++|++|++..+. +...|+|.+++ .++...
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~------------~~~~~~V~~~~-~~g~~~ 144 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDG------------DEDLFRVTTRD-SDGDGE 144 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEET------------TEEEEEEEEEE-TTS-EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCC------------CccEEEEEEee-cCCCee
Confidence 035678999999999999999985 69999999999995210 01368999876 335556
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
.+.++.||+||| ..|.+|.+. ........++|+++|.... ....++++|+|||||.||+|++..|.+.+.
T Consensus 145 ~~~ar~vVla~G---~~P~iP~~~---~~~~~~~~v~Hss~~~~~~----~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~ 214 (341)
T PF13434_consen 145 TYRARNVVLATG---GQPRIPEWF---QDLPGSPRVFHSSEYLSRI----DQSLAGKRVAVVGGGQSAAEIFLDLLRRGP 214 (341)
T ss_dssp EEEESEEEE-------EE---GGG---GGGTT-TTEEEGGGHHHHH----T-----EEEEEE-SSHHHHHHHHHHHHH-T
T ss_pred EEEeCeEEECcC---CCCCCCcch---hhcCCCCCEEEehHhhhcc----ccccCCCeEEEECCcHhHHHHHHHHHhCCC
Confidence 899999999999 578988754 1111236799999986522 235688999999999999999999999865
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccch-hhhhhhhhhhhcCCCc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFF-MFYSTRFSQFLHGSPN 266 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~-~~~~~r~~~~~~~~~~ 266 (511)
. .+|+++.|++. +.|... .|+. +.+.....+.+...|.
T Consensus 215 ~---~~V~~i~R~~~-~~~~d~---s~f~ne~f~P~~v~~f~~l~~ 253 (341)
T PF13434_consen 215 E---AKVTWISRSPG-FFPMDD---SPFVNEIFSPEYVDYFYSLPD 253 (341)
T ss_dssp T---EEEEEEESSSS--EB-------CCHHGGGSHHHHHHHHTS-H
T ss_pred C---cEEEEEECCCc-cCCCcc---ccchhhhcCchhhhhhhcCCH
Confidence 2 46999999985 445443 3432 2334445555555543
No 15
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.94 E-value=8e-26 Score=227.49 Aligned_cols=307 Identities=19% Similarity=0.201 Sum_probs=195.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc-cC----CCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE-FT----DFPWPNRDDPG 72 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~ 72 (511)
|.+.+|++|||+||+|..+|.++ .|.+++++|+...+||++..- +.|.-.+-.....+. +. .+.+... ..
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~--~~ 78 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE--VP 78 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecC--CC
Confidence 55679999999999999999999 888899999987999998751 333322211111111 00 1111110 00
Q ss_pred CCChHHHHHHHHHH-----------HHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 73 FPSYTEILDYLESY-----------AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 73 ~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
-....++.+..+.. .+..++ .+..+ +. +. .+..+|.+... ..+
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V--~vi~G-~a---~f-----------------~~~~~v~V~~~---~~~ 132 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGV--DVIRG-EA---RF-----------------VDPHTVEVTGE---DKE 132 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCC--EEEEE-EE---EE-----------------CCCCEEEEcCC---Cce
Confidence 12333344333332 222333 22221 11 11 11225666553 123
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
++.+|++||||| +.|..|+++ +.+.. .++.+.+...+ . ..+++++|||+|.+|+|+|..+++.+.
T Consensus 133 ~~~a~~iiIATG---S~p~~~~~~---~~~~~--~~~~s~~~l~~------~-~lP~~lvIiGgG~IGlE~a~~~~~LG~ 197 (454)
T COG1249 133 TITADNIIIATG---SRPRIPPGP---GIDGA--RILDSSDALFL------L-ELPKSLVIVGGGYIGLEFASVFAALGS 197 (454)
T ss_pred EEEeCEEEEcCC---CCCcCCCCC---CCCCC--eEEechhhccc------c-cCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 899999999999 578888877 43321 24444443221 1 467899999999999999999999987
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ ||++.|.+. ++|..+ .
T Consensus 198 ~-----VTiie~~~~-iLp~~D-----------~---------------------------------------------- 214 (454)
T COG1249 198 K-----VTVVERGDR-ILPGED-----------P---------------------------------------------- 214 (454)
T ss_pred c-----EEEEecCCC-CCCcCC-----------H----------------------------------------------
Confidence 6 999999886 555443 0
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEcCCc--eeeccEEEEecCCCCccc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFEDNT--KLEADVVILCTGYDGKKK 374 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~dG~--~~~~D~VI~aTG~~~~~~ 374 (511)
.+++.+.+.++++++++..+. +.+++.+. +.+++|+ ++++|.|++|||.+|+..
T Consensus 215 -------------------ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 215 -------------------EISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred -------------------HHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 111122234556677887776 55554432 6677877 689999999999999975
Q ss_pred ccccCCCcccccccCCCCcccceeeecCCCCCceEEEeec-ccchhhhhHHHHHHHHHHHhcC
Q 010421 375 LKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYI-ESVSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~-~~~~~~~~~e~qa~~~a~~l~g 436 (511)
- |+.+-.++..+.++.+.+. ....++.||+|++|.. ......+.+..|++.+|..+.|
T Consensus 276 ~---LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 276 G---LGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred C---CChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 2 2222122222455566666 5556779999999988 4445668999999999999886
No 16
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.94 E-value=8.9e-25 Score=226.49 Aligned_cols=305 Identities=18% Similarity=0.174 Sum_probs=183.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-CCcCceeccCCCCcccc----CCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHRSDYEF----TDFPWPNRDDPGFPS 75 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 75 (511)
..+||+||||||+|++||..| .|.+|+|+|+.. +||+|.. ...|+..+......+.+ ..+.+... .....
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~--~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE--NVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC--CCccC
Confidence 458999999999999999999 899999999976 9998754 23444332222222111 11111110 12235
Q ss_pred hHHHHHHHHHHHH-----------hcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 76 YTEILDYLESYAK-----------HFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 76 ~~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
..++.+|.+.+.+ +.++ .+..+ +++.++. . ++++...+++ .++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~~~~------------------~--~~~v~~~~~~--~~~~ 134 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIRG-EAKLVDP------------------N--TVRVMTEDGE--QTYT 134 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC------------------C--EEEEecCCCc--EEEE
Confidence 5666677544433 3344 34433 3333322 2 2444321111 2789
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCC
Q 010421 145 FEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPE 224 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 224 (511)
||+||+|||. .|..| | |.+.....++++.+...+ ...+++|+|||+|.+|+|+|..+++.+.+
T Consensus 135 ~d~lViAtGs---~p~~~--p---g~~~~~~~v~~~~~~~~~-------~~~~~~vvVvGgG~~g~E~A~~l~~~g~~-- 197 (462)
T PRK06416 135 AKNIILATGS---RPREL--P---GIEIDGRVIWTSDEALNL-------DEVPKSLVVIGGGYIGVEFASAYASLGAE-- 197 (462)
T ss_pred eCEEEEeCCC---CCCCC--C---CCCCCCCeEEcchHhhCc-------cccCCeEEEECCCHHHHHHHHHHHHcCCe--
Confidence 9999999995 45543 3 433211124444433321 13468999999999999999999987654
Q ss_pred CCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCC
Q 010421 225 GQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304 (511)
Q Consensus 225 ~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (511)
||++.|.+. ++|... ...
T Consensus 198 ---Vtli~~~~~-~l~~~~-----------~~~----------------------------------------------- 215 (462)
T PRK06416 198 ---VTIVEALPR-ILPGED-----------KEI----------------------------------------------- 215 (462)
T ss_pred ---EEEEEcCCC-cCCcCC-----------HHH-----------------------------------------------
Confidence 999999875 333321 000
Q ss_pred CCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcCC---ceeeccEEEEecCCCCccccc
Q 010421 305 KPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFEDN---TKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 305 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~dG---~~~~~D~VI~aTG~~~~~~~~ 376 (511)
.+.+.+.+++.+|+++.+. +.+++++ + +.+++| +++++|.||+|||.+++..+.
T Consensus 216 ------------------~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l 277 (462)
T PRK06416 216 ------------------SKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENL 277 (462)
T ss_pred ------------------HHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCC
Confidence 0011123445567877774 7777643 3 345565 669999999999999987642
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
. ..-.++..+ ++.+.+..++ .++.||+|++|.... +.....+..|++.+|..+.|.
T Consensus 278 ~---l~~~gl~~~-~g~i~vd~~~-~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (462)
T PRK06416 278 G---LEELGVKTD-RGFIEVDEQL-RTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGN 334 (462)
T ss_pred C---chhcCCeec-CCEEeECCCC-ccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCC
Confidence 1 010111112 3334343333 367899999998764 334578999999999999874
No 17
>PLN02507 glutathione reductase
Probab=99.94 E-value=5.4e-25 Score=228.39 Aligned_cols=306 Identities=16% Similarity=0.147 Sum_probs=185.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcC---------CCCcCccccC-CCcCceeccCCCCcc----ccCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA---------SDSIGGIWKS-CSYNSTKLQSHRSDY----EFTDFPWPN 67 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~---------~~~~GG~w~~-~~~~~~~~~~~~~~~----~~~~~~~~~ 67 (511)
.+||+||||||+|+.+|..+ .|.+|+|+|+ .+.+||+|.. .++|.-.+......+ ....+.+..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 37999999999999999999 8999999996 3679999855 234443321111110 001111110
Q ss_pred CCCCCCCChHHHHHHHHHHHH-----------hcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC
Q 010421 68 RDDPGFPSYTEILDYLESYAK-----------HFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN 136 (511)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (511)
. ...-....++.++.....+ ..++ .+. ..++..++ ...++|+..++
T Consensus 105 ~-~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~i-~g~a~~vd------------------~~~v~V~~~~g- 161 (499)
T PLN02507 105 N-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGV--KLY-EGEGKIVG------------------PNEVEVTQLDG- 161 (499)
T ss_pred C-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEE-EEEEEEec------------------CCEEEEEeCCC-
Confidence 0 0111233444433333322 2233 222 22444333 23345554333
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHH
Q 010421 137 SNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216 (511)
Q Consensus 137 ~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l 216 (511)
+..++.||+|||||| +.|..|.+| |.+. ..++.+...+ ...+++|+|||+|.+|+|+|..+
T Consensus 162 --~~~~~~~d~LIIATG---s~p~~p~ip---G~~~----~~~~~~~~~l-------~~~~k~vvVIGgG~ig~E~A~~l 222 (499)
T PLN02507 162 --TKLRYTAKHILIATG---SRAQRPNIP---GKEL----AITSDEALSL-------EELPKRAVVLGGGYIAVEFASIW 222 (499)
T ss_pred --cEEEEEcCEEEEecC---CCCCCCCCC---Cccc----eechHHhhhh-------hhcCCeEEEECCcHHHHHHHHHH
Confidence 333588999999999 467788888 6432 2233322221 12468999999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhcc
Q 010421 217 AESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWK 296 (511)
Q Consensus 217 ~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
+..+.+ |+++.|.+. +++..+ . . +.
T Consensus 223 ~~~G~~-----Vtli~~~~~-~l~~~d-------~----~----------------------------~~---------- 247 (499)
T PLN02507 223 RGMGAT-----VDLFFRKEL-PLRGFD-------D----E----------------------------MR---------- 247 (499)
T ss_pred HHcCCe-----EEEEEecCC-cCcccC-------H----H----------------------------HH----------
Confidence 888765 999999774 222211 0 0 00
Q ss_pred CCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCC
Q 010421 297 LPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 297 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
..+.+.+++.+|+++.+. +.++++ ++ +.+.+|+++++|.||+|+|+++
T Consensus 248 ---------------------------~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 248 ---------------------------AVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred ---------------------------HHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCC
Confidence 011123445567777764 667653 33 5566888899999999999999
Q ss_pred cccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 372 KKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
+..++.+ .-.++..++++.+.+..++ .++.||+|++|..... ...+.|..|++.++..+.|.
T Consensus 301 n~~~l~l---~~~gl~~~~~G~I~Vd~~~-~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 301 NTKRLNL---EAVGVELDKAGAVKVDEYS-RTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred CCCCCCc---hhhCcEECCCCcEecCCCC-cCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 9764211 1111111334445555444 3688999999987653 34578999999999998764
No 18
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.94 E-value=1.1e-24 Score=224.10 Aligned_cols=301 Identities=16% Similarity=0.165 Sum_probs=183.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCc----cccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSD----YEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (511)
.+||+||||||+|++||..+ .|++|+|+|+ +.+||++... +.|...+-..... -.+..+.+... ..-...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG--KARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC--CCCcCH
Confidence 48999999999999999999 8999999999 5799987641 3333221111000 01111111100 001112
Q ss_pred H-----------HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 77 T-----------EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 77 ~-----------~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
. ++.++++...++.++ .+..+ ++..++. . ++.+... +. .+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~v~~------------------~--~v~v~~~--g~--~~~~ 131 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGV--ELLEG-RARLVGP------------------N--TVEVLQD--GT--TYTA 131 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEE-EEEEecC------------------C--EEEEecC--Ce--EEEc
Confidence 2 233444555555665 44443 5555543 1 2333221 22 6899
Q ss_pred CEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCC
Q 010421 146 EFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEG 225 (511)
Q Consensus 146 d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 225 (511)
|+||+||| +.|..|++| |.+. .+.+.+...+ ...+++|+|||+|.+|+|+|..+++.+.+
T Consensus 132 d~lIiATG---s~p~~p~i~---G~~~----~~~~~~~~~l-------~~~~~~vvVIGgG~~g~E~A~~l~~~G~~--- 191 (446)
T TIGR01424 132 KKILIAVG---GRPQKPNLP---GHEL----GITSNEAFHL-------PTLPKSILILGGGYIAVEFAGIWRGLGVQ--- 191 (446)
T ss_pred CEEEEecC---CcCCCCCCC---Cccc----eechHHhhcc-------cccCCeEEEECCcHHHHHHHHHHHHcCCe---
Confidence 99999999 568888888 6432 2222222221 12478999999999999999999887754
Q ss_pred CcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCC
Q 010421 226 QPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLK 305 (511)
Q Consensus 226 ~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (511)
|+++.+.+. ++|..+ ...
T Consensus 192 --Vtli~~~~~-~l~~~d-----------~~~------------------------------------------------ 209 (446)
T TIGR01424 192 --VTLIYRGEL-ILRGFD-----------DDM------------------------------------------------ 209 (446)
T ss_pred --EEEEEeCCC-CCcccC-----------HHH------------------------------------------------
Confidence 999998764 222211 000
Q ss_pred CCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCcccccccCC
Q 010421 306 PDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLP 380 (511)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~ 380 (511)
...+.+.+++.+|+++.+. +.+++. ++ |.+.+|+++++|.||+|||++++...+.+
T Consensus 210 -----------------~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l-- 270 (446)
T TIGR01424 210 -----------------RALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGL-- 270 (446)
T ss_pred -----------------HHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCc--
Confidence 0011123445567777764 666653 33 55668888999999999999998653211
Q ss_pred CcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 381 EPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
...++..++++.+.+..++ .++.||+|++|..... ...+.|..|++.++..+.|.
T Consensus 271 -~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 271 -EAAGVELNDAGAIAVDEYS-RTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred -cccCeEECCCCcEEeCCCC-ccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 1111111333444444443 3578999999987753 34568999999999998763
No 19
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.94 E-value=4e-25 Score=225.82 Aligned_cols=300 Identities=15% Similarity=0.188 Sum_probs=186.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
.+++|||||||++|+.+|+.| .+.+|+|||+++.. .|..+ ++.. .......+++.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~-------~~~~~---------------l~~~-~~g~~~~~~~~ 65 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM-------LFTPL---------------LPQT-TTGTLEFRSIC 65 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc-------chhhh---------------HHHh-cccCCChHHhH
Confidence 357999999999999999999 56899999998654 22111 0000 01111233444
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe--CC---CCceeEEEeCEEEEeeccc
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT--HN---SNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~---~~~~~~~~~d~vVlAtG~~ 155 (511)
..++..++.++. .....+|++|+.. +. .|.+.. .. ++...++.||+||+|||
T Consensus 66 ~~~~~~~~~~~~---~~i~~~V~~Id~~----------------~~--~v~~~~~~~~~~~~~~g~~i~yD~LViAtG-- 122 (424)
T PTZ00318 66 EPVRPALAKLPN---RYLRAVVYDVDFE----------------EK--RVKCGVVSKSNNANVNTFSVPYDKLVVAHG-- 122 (424)
T ss_pred HHHHHHhccCCe---EEEEEEEEEEEcC----------------CC--EEEEecccccccccCCceEecCCEEEECCC--
Confidence 445555555554 3456799999873 22 244411 10 01112799999999999
Q ss_pred CCCCCCCCCCCCCCCCcccceEEeccccCccch---h--h----h-------hhccCCCcEEEECCCCCHHHHHHHHHHh
Q 010421 156 GDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDK---E--A----A-------SQLLKDKKVAVVGFKKSAIDLAKECAES 219 (511)
Q Consensus 156 ~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~---~--~----~-------~~~~~~k~V~VvG~G~sg~d~a~~l~~~ 219 (511)
+.|..|.+| |.... .+....+.+... . . . ......++|+|||+|.+|+|+|.+|+..
T Consensus 123 -s~~~~~~ip---G~~e~---~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~ 195 (424)
T PTZ00318 123 -ARPNTFNIP---GVEER---AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADF 195 (424)
T ss_pred -cccCCCCCC---CHHHc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHH
Confidence 467777777 54321 111111110000 0 0 0 0012335899999999999999999863
Q ss_pred cCC---------CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHH
Q 010421 220 NQG---------PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIE 290 (511)
Q Consensus 220 ~~~---------~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (511)
... ....+|+++.+.+. ++|... ..
T Consensus 196 ~~~~~~~~~~~~~~~~~Vtlv~~~~~-ll~~~~-----------~~---------------------------------- 229 (424)
T PTZ00318 196 FRDDVRNLNPELVEECKVTVLEAGSE-VLGSFD-----------QA---------------------------------- 229 (424)
T ss_pred HHHHHHhhhhcccccCEEEEEcCCCc-ccccCC-----------HH----------------------------------
Confidence 100 00246999998765 223221 00
Q ss_pred HHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCC
Q 010421 291 SYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGY 369 (511)
Q Consensus 291 ~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~ 369 (511)
+++...+.+++.+|+++.+. |.++++++|+++||+++++|.||+|+|.
T Consensus 230 -------------------------------~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 230 -------------------------------LRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred -------------------------------HHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCC
Confidence 00111234666778988765 8899999999999999999999999999
Q ss_pred CCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc------chhhhhHHHHHHHHHHHhcCCC
Q 010421 370 DGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES------VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~------~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+++. +...++ +..++++.+.+...+..++.||+|++|.... +.....|..|++++|..|.+.+
T Consensus 279 ~~~~-~~~~~~-----l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 279 GPGP-LTKQLK-----VDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred CCcc-hhhhcC-----CcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 9873 332222 1123445666766666678999999997664 2234678999999998875443
No 20
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-24 Score=207.07 Aligned_cols=262 Identities=20% Similarity=0.276 Sum_probs=185.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
+.+||+||||||+||+||.++ .+++ ++|+|+ ..+||..... . ..-.|+.+ +.-.++.++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~------~----~venypg~-------~~~~~g~~L 63 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKT------T----DVENYPGF-------PGGILGPEL 63 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccc------e----eecCCCCC-------ccCCchHHH
Confidence 468999999999999999999 8888 556655 5666543320 0 00011111 222467888
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
.+-++..+.+++. .+.. .+|.+++. .+ .+.|.+.++ +++++.||+|||. .
T Consensus 64 ~~~~~~~a~~~~~--~~~~-~~v~~v~~-----------------~~~~F~v~t~~~------~~~ak~vIiAtG~---~ 114 (305)
T COG0492 64 MEQMKEQAEKFGV--EIVE-DEVEKVEL-----------------EGGPFKVKTDKG------TYEAKAVIIATGA---G 114 (305)
T ss_pred HHHHHHHHhhcCe--EEEE-EEEEEEee-----------------cCceEEEEECCC------eEEEeEEEECcCC---c
Confidence 8888888888887 5554 67777776 33 677877665 6999999999995 5
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
++.|.+| |...|.|+-+|.+..++ . .+++|+|+|||+|.||+|-|..|++.+.+ ||+++|++..-
T Consensus 115 ~~~~~~~---~e~e~~g~gv~yc~~cd------g-~~~~k~v~ViGgG~sAve~Al~L~~~a~~-----Vtlv~r~~~~r 179 (305)
T COG0492 115 ARKLGVP---GEEEFEGKGVSYCATCD------G-FFKGKDVVVIGGGDSAVEEALYLSKIAKK-----VTLVHRRDEFR 179 (305)
T ss_pred ccCCCCC---cchhhcCCceEEeeecC------c-cccCCeEEEEcCCHHHHHHHHHHHHhcCe-----EEEEecCcccC
Confidence 6777777 65578888888777776 3 58999999999999999999999998765 99999987521
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
+.
T Consensus 180 -a~----------------------------------------------------------------------------- 181 (305)
T COG0492 180 -AE----------------------------------------------------------------------------- 181 (305)
T ss_pred -cC-----------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccCCchhhhhc-cCeEEEEeCc-eeEEeC---CcEEEcCC--c--eeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 319 MAIMPEGFFSEAE-KGKIVFKRAS-KWWFWK---GGLEFEDN--T--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 319 ~~~~~~~~~~~l~-~g~v~v~~~~-i~~~~~---~~v~~~dG--~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+...+.++ ..+|.++.+. +.++.+ .+|++++. + ++.+|-|+.+.|+.|+..+..-+.. .+
T Consensus 182 -----~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~------~~ 250 (305)
T COG0492 182 -----EILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV------LD 250 (305)
T ss_pred -----HHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc------cC
Confidence 00011122 2377877774 888877 46888763 3 4899999999999999765321111 24
Q ss_pred CCCcccceeeecCCCCCceEEEeeccc
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIES 416 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~ 416 (511)
+++.+.+... ..++.|++|++|....
T Consensus 251 ~~g~I~v~~~-~~TsvpGifAaGDv~~ 276 (305)
T COG0492 251 ENGYIVVDEE-METSVPGIFAAGDVAD 276 (305)
T ss_pred CCCcEEcCCC-cccCCCCEEEeEeecc
Confidence 4555545444 5688999999997654
No 21
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.93 E-value=2e-24 Score=227.32 Aligned_cols=284 Identities=20% Similarity=0.252 Sum_probs=187.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
|.+.+||+|||||||||+||..| .+++|+|+|++ .+||.+.. .+ ....+| .....++.+
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~-~~------------~i~~~p-----g~~~~~~~~ 61 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI-TS------------EVVNYP-----GILNTTGPE 61 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe-cc------------ccccCC-----CCcCCCHHH
Confidence 77779999999999999999999 89999999995 68887653 10 000111 012245678
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.++++..++++++ .+ ++++|+.++.. +..+.|.+.++ .+.+++||+|||+ .
T Consensus 62 l~~~l~~~~~~~gv--~~-~~~~V~~i~~~----------------~~~~~V~~~~g------~~~a~~lVlATGa---~ 113 (555)
T TIGR03143 62 LMQEMRQQAQDFGV--KF-LQAEVLDVDFD----------------GDIKTIKTARG------DYKTLAVLIATGA---S 113 (555)
T ss_pred HHHHHHHHHHHcCC--EE-eccEEEEEEec----------------CCEEEEEecCC------EEEEeEEEECCCC---c
Confidence 88999999999887 44 47789888862 33455655433 5789999999994 6
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
|+.|.+| |.+.+.+..+|...... .....+++|+|||+|.+|+|+|..|++.+. +|+++.|.+...
T Consensus 114 p~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~-----~Vtli~~~~~~~ 179 (555)
T TIGR03143 114 PRKLGFP---GEEEFTGRGVAYCATCD------GEFFTGMDVFVIGGGFAAAEEAVFLTRYAS-----KVTVIVREPDFT 179 (555)
T ss_pred cCCCCCC---CHHHhCCceEEEEeecC------hhhcCCCEEEEECCCHHHHHHHHHHHccCC-----EEEEEEeCCccc
Confidence 7888888 76556555555443332 234678999999999999999999987765 499999976421
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
.+. .. .
T Consensus 180 ~~~--------------~~---------------------------~--------------------------------- 185 (555)
T TIGR03143 180 CAK--------------LI---------------------------A--------------------------------- 185 (555)
T ss_pred cCH--------------HH---------------------------H---------------------------------
Confidence 000 00 0
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEE---cCCcee----eccE----EEEecCCCCcccccccCCCc
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEF---EDNTKL----EADV----VILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~---~dG~~~----~~D~----VI~aTG~~~~~~~~~~~~~~ 382 (511)
...+...+|+++.+. |.++.+++ +.+ .+|+.. ++|. ||+|+|++|+..+.+.
T Consensus 186 --------~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~---- 253 (555)
T TIGR03143 186 --------EKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG---- 253 (555)
T ss_pred --------HHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh----
Confidence 011223456766654 66766543 222 356543 3666 9999999999865431
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHh
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLI 434 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l 434 (511)
.+..+.++.+.+... +.++.||+|++|.... ...+..|..|++.+|..+
T Consensus 254 --~l~l~~~G~I~vd~~-~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 254 --VVELDKRGYIPTNED-METNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred --hcccCCCCeEEeCCc-cccCCCCEEEceeccCCCcchheeHHhhHHHHHHHH
Confidence 111123344444433 3457899999998743 222445667777666654
No 22
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.93 E-value=6.2e-25 Score=221.62 Aligned_cols=286 Identities=18% Similarity=0.230 Sum_probs=182.4
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++|+|||||+||+.+|..| .+.+|+|+++++.. .|....+ + ..+ ......+++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~-------~y~~~~l--~---~~~----------~~~~~~~~~~ 60 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD-------EYNKPDL--S---HVF----------SQGQRADDLT 60 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC-------CcCcCcC--c---HHH----------hCCCCHHHhh
Confidence 6899999999999999999 46789999997643 2211110 0 000 1111233443
Q ss_pred H-HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 81 D-YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 81 ~-yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
. ....+++++++ .++++++|++++.. . ..|.+ ++. .+.||+||+||| ..|
T Consensus 61 ~~~~~~~~~~~gv--~~~~~~~V~~id~~-----------------~-~~v~~-~~~-----~~~yd~LVlATG---~~~ 111 (377)
T PRK04965 61 RQSAGEFAEQFNL--RLFPHTWVTDIDAE-----------------A-QVVKS-QGN-----QWQYDKLVLATG---ASA 111 (377)
T ss_pred cCCHHHHHHhCCC--EEECCCEEEEEECC-----------------C-CEEEE-CCe-----EEeCCEEEECCC---CCC
Confidence 3 24566777888 78889999999872 1 24554 322 789999999999 467
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
..|++| |.+. +++.....+... .......+++|+|||+|.+|+|+|..|++.+.+ |+++.+.+.. +
T Consensus 112 ~~p~i~---G~~~----v~~~~~~~~~~~-~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~-----Vtlv~~~~~~-l 177 (377)
T PRK04965 112 FVPPIP---GREL----MLTLNSQQEYRA-AETQLRDAQRVLVVGGGLIGTELAMDLCRAGKA-----VTLVDNAASL-L 177 (377)
T ss_pred CCCCCC---CCce----EEEECCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe-----EEEEecCCcc-c
Confidence 888888 6542 333222211100 001224678999999999999999999987654 9999997752 2
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
+... + ..
T Consensus 178 ~~~~----~------~~--------------------------------------------------------------- 184 (377)
T PRK04965 178 ASLM----P------PE--------------------------------------------------------------- 184 (377)
T ss_pred chhC----C------HH---------------------------------------------------------------
Confidence 2110 0 00
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
..+.+.+.+++.+|+++.+. +.+++.++ |++.||+++++|.||+|+|++++..+.+..+... .. .+
T Consensus 185 --~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~------~~-gi 255 (377)
T PRK04965 185 --VSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAV------NR-GI 255 (377)
T ss_pred --HHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCc------CC-CE
Confidence 00011123445567777654 67776432 6788999999999999999999876543222111 11 23
Q ss_pred cceeeecCCCCCceEEEeecccc-----hhhhhHHHHHHHHHHHhcCCC
Q 010421 395 PLYRGTIHPLIPNMAFVGYIESV-----SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.+..+ +.++.||+|++|..... ..+..+..|++.+|+.|.|..
T Consensus 256 ~vd~~-l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 256 VVDSY-LQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred EECCC-cccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 33333 23568999999976532 234558899999999998853
No 23
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.93 E-value=1.5e-24 Score=226.60 Aligned_cols=281 Identities=15% Similarity=0.180 Sum_probs=186.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+||||||+|++||..| .|++|+|++. .+||++.. .. + ...+.. .....+.++.+
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~-~~-~--------~~~~~~--------~~~~~~~~l~~ 271 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKD-TV-G--------IENLIS--------VPYTTGSQLAA 271 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcccc-Cc-C--------cccccc--------cCCCCHHHHHH
Confidence 48999999999999999999 8999999975 48887754 10 0 001110 11235778889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++...++++++ .++++++|++++.. ++.|.|++.++. .+.||+||+|||. .|+.
T Consensus 272 ~l~~~l~~~gv--~i~~~~~V~~I~~~----------------~~~~~v~~~~g~-----~i~~d~lIlAtGa---~~~~ 325 (515)
T TIGR03140 272 NLEEHIKQYPI--DLMENQRAKKIETE----------------DGLIVVTLESGE-----VLKAKSVIVATGA---RWRK 325 (515)
T ss_pred HHHHHHHHhCC--eEEcCCEEEEEEec----------------CCeEEEEECCCC-----EEEeCEEEECCCC---CcCC
Confidence 99999988888 78889999999862 445777765553 7999999999995 5677
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|++| |...+.+.-++...... .....+++|+|||+|.+|+|+|..|+..+.+ ||++.+.+....
T Consensus 326 ~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~-----Vtli~~~~~l~~-- 389 (515)
T TIGR03140 326 LGVP---GEKEYIGKGVAYCPHCD------GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRH-----VTVLEFADELKA-- 389 (515)
T ss_pred CCCC---CHHHcCCCeEEEeeccC------hhhcCCCEEEEECCcHHHHHHHHHHHhcCcE-----EEEEEeCCcCCh--
Confidence 7788 65445444344333222 1235689999999999999999999887654 999987653100
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
.+ .
T Consensus 390 -------------~~-------------------------------~--------------------------------- 392 (515)
T TIGR03140 390 -------------DK-------------------------------V--------------------------------- 392 (515)
T ss_pred -------------hH-------------------------------H---------------------------------
Confidence 00 0
Q ss_pred cCCchhhhhcc-CeEEEEeCc-eeEEeCC-----cEEEcCC-----ceeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 322 MPEGFFSEAEK-GKIVFKRAS-KWWFWKG-----GLEFEDN-----TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 322 ~~~~~~~~l~~-g~v~v~~~~-i~~~~~~-----~v~~~dG-----~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+.+.+++ .+|+++.+. +.+++++ +|+++++ +++++|.||+|+|++|+..+++.. +..+
T Consensus 393 ----l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~------~~~~ 462 (515)
T TIGR03140 393 ----LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA------VELN 462 (515)
T ss_pred ----HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh------cccC
Confidence 0012222 357777664 6677654 3666542 358999999999999997654311 1112
Q ss_pred CCCcccceeeecCCCCCceEEEeecccch--hhhhHHHHHHHHHHHh
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIESVS--NLHTAELRSIWLSRLI 434 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~~~--~~~~~e~qa~~~a~~l 434 (511)
..+.+.+...+ .++.||+|++|...... ....|..|+.-+|..+
T Consensus 463 ~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i 508 (515)
T TIGR03140 463 RRGEIVIDERG-RTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSA 508 (515)
T ss_pred CCCeEEECCCC-CCCCCCEEEcccccCCccceEEEEEccHHHHHHHH
Confidence 33334444333 35789999999876532 2334555666555543
No 24
>PRK06370 mercuric reductase; Validated
Probab=99.93 E-value=2.1e-24 Score=223.44 Aligned_cols=305 Identities=13% Similarity=0.121 Sum_probs=181.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----ccCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----EFTDFPWPNRDDPGF 73 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 73 (511)
|...+||+||||||+|++||..| .|++|+|+|+. .+||+|... ..|.-.+......+ ....+.++.. ....
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~ 79 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVG-GPVS 79 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccC-ccCc
Confidence 55679999999999999999999 89999999994 789987641 12211110000000 0011111100 0012
Q ss_pred CChHHHHHHHHHHH-----------Hhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 74 PSYTEILDYLESYA-----------KHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 74 ~~~~~~~~yl~~~~-----------~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
....++.++.+... ++. ++ .++.++.+. ++ . .+|++. +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~~-~~------------------~--~~v~v~-~~----- 130 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHARF-ES------------------P--NTVRVG-GE----- 130 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEEE-cc------------------C--CEEEEC-cE-----
Confidence 23344444433332 222 44 444444331 11 1 135552 21
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
++.||+||+||| +.|..|.+| |.+.. .++++.+.... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 131 ~~~~d~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvVIGgG~~g~E~A~~l~~~G~ 195 (463)
T PRK06370 131 TLRAKRIFINTG---ARAAIPPIP---GLDEV--GYLTNETIFSL-------DELPEHLVIIGGGYIGLEFAQMFRRFGS 195 (463)
T ss_pred EEEeCEEEEcCC---CCCCCCCCC---CCCcC--ceEcchHhhCc-------cccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 689999999999 568888888 65432 24444443321 1347899999999999999999998876
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ |+++.|.+. ++|... ...
T Consensus 196 ~-----Vtli~~~~~-~l~~~~-----------~~~-------------------------------------------- 214 (463)
T PRK06370 196 E-----VTVIERGPR-LLPRED-----------EDV-------------------------------------------- 214 (463)
T ss_pred e-----EEEEEcCCC-CCcccC-----------HHH--------------------------------------------
Confidence 4 999999875 333221 000
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEc--C-CceeeccEEEEecCCCCcc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFE--D-NTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~--d-G~~~~~D~VI~aTG~~~~~ 373 (511)
.+.+.+.+++.+|+++.+. +.+++++ + |.+. + +.++++|.||+|||++|+.
T Consensus 215 ---------------------~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 215 ---------------------AAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ---------------------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 0011123445567777664 6677543 2 3332 3 4469999999999999987
Q ss_pred cccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccch-hhhhHHHHHHHHHHHhcCC
Q 010421 374 KLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVS-NLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 437 (511)
..+. + .-.++..++++.+.+...+ .++.||+|++|...... ....+..|++.+|..+.+.
T Consensus 274 ~~l~-l--~~~g~~~~~~G~i~vd~~l-~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 274 DDLG-L--EAAGVETDARGYIKVDDQL-RTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CCcC-c--hhhCceECCCCcEeECcCC-cCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 5211 0 1011111334445555443 35789999999876543 3467899999999998764
No 25
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.93 E-value=2.5e-24 Score=221.67 Aligned_cols=303 Identities=13% Similarity=0.101 Sum_probs=181.8
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC-CcCccccCC-CcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD-SIGGIWKSC-SYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~-~~GG~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
++.+||+|||||++|++||..| .|.+|+|+|+.+ .+||+|... ..|. ..+........++ .......+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~-------k~l~~~~~~~~~~-~~~~~~~~ 72 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPT-------KTLVHDAQQHTDF-VRAIQRKN 72 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccch-------HHHHHHhccCCCH-HHHHHHHH
Confidence 0468999999999999999999 899999999976 489988541 1222 1111100000000 00111122
Q ss_pred HHHHHHHHH-----HHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 78 EILDYLESY-----AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 78 ~~~~yl~~~-----~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
++.++++.. .+..++ .+.. .++..++ .+.+.|...++ ..++.||+||+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~gv--~~~~-g~~~~i~------------------~~~~~v~~~~g----~~~~~~d~lviAT 127 (441)
T PRK08010 73 EVVNFLRNKNFHNLADMPNI--DVID-GQAEFIN------------------NHSLRVHRPEG----NLEIHGEKIFINT 127 (441)
T ss_pred HHHHHHHHhHHHHHhhcCCc--EEEE-EEEEEec------------------CCEEEEEeCCC----eEEEEeCEEEEcC
Confidence 333444221 111133 2222 2344333 23344443332 1258999999999
Q ss_pred cccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 153 GKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 153 G~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
| +.|..|.+| |.+.+.+ ++++.++... ...+++|+|||+|.+|+|+|..++..+.+ |+++.
T Consensus 128 G---s~p~~p~i~---G~~~~~~-v~~~~~~~~~-------~~~~~~v~ViGgG~~g~E~A~~l~~~g~~-----Vtli~ 188 (441)
T PRK08010 128 G---AQTVVPPIP---GITTTPG-VYDSTGLLNL-------KELPGHLGILGGGYIGVEFASMFANFGSK-----VTILE 188 (441)
T ss_pred C---CcCCCCCCC---CccCCCC-EEChhHhhcc-------cccCCeEEEECCCHHHHHHHHHHHHCCCe-----EEEEe
Confidence 9 567888888 6654433 5555444331 13568999999999999999999988754 99999
Q ss_pred ecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccc
Q 010421 233 RTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEE 312 (511)
Q Consensus 233 R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 312 (511)
|.+. ++|..+ ...
T Consensus 189 ~~~~-~l~~~~-----------~~~------------------------------------------------------- 201 (441)
T PRK08010 189 AASL-FLPRED-----------RDI------------------------------------------------------- 201 (441)
T ss_pred cCCC-CCCCcC-----------HHH-------------------------------------------------------
Confidence 9764 334322 000
Q ss_pred ccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--cEEEc-CCceeeccEEEEecCCCCcccccccCCCccccccc
Q 010421 313 DYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--GLEFE-DNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLE 388 (511)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~v~~~-dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~ 388 (511)
.+.+.+.+++.+|+++.+. +.+++.+ ++.+. ++.++++|.||+|+|.+|+..++.. ...++..
T Consensus 202 ----------~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~---~~~gl~~ 268 (441)
T PRK08010 202 ----------ADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHP---ENAGIAV 268 (441)
T ss_pred ----------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCc---hhcCcEE
Confidence 0011234555677777664 7777533 34432 2335899999999999999754211 0011111
Q ss_pred CCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 389 HPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 389 ~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
++++.+.+..++ .++.||+|++|..... ...+.+..|++.++..+.|+
T Consensus 269 ~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 269 NERGAIVVDKYL-HTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred CCCCcEEECCCc-ccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 334445554443 4578999999987764 34567888999999988773
No 26
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.93 E-value=1.9e-24 Score=223.13 Aligned_cols=296 Identities=16% Similarity=0.174 Sum_probs=180.7
Q ss_pred eEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
+|+|||||++|+++|..| .+.+|+|||+++.++ |..+.. +......+....++..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~~~-------------------~~~~~~~~~~~~~~~~ 60 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGACGL-------------------PYFVGGFFDDPNTMIA 60 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecCCC-------------------ceEeccccCCHHHhhc
Confidence 799999999999999999 356899999987652 111000 0000112222334444
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+.....+++++ .++++++|++|+.. +. .|.+.+..++....+.||+||+||| ..|..
T Consensus 61 ~~~~~~~~~gv--~~~~~~~V~~id~~----------------~~--~v~~~~~~~~~~~~~~yd~lviAtG---~~~~~ 117 (444)
T PRK09564 61 RTPEEFIKSGI--DVKTEHEVVKVDAK----------------NK--TITVKNLKTGSIFNDTYDKLMIATG---ARPII 117 (444)
T ss_pred CCHHHHHHCCC--eEEecCEEEEEECC----------------CC--EEEEEECCCCCEEEecCCEEEECCC---CCCCC
Confidence 44455566777 78889999999872 22 4666553223322344999999999 46777
Q ss_pred CCCCCCCCCCcccceEEeccccCccchh-hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKE-AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~-~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
|.+| |.+. ..+++...+.+.... ..-....+++|+|||+|.+|+|+|..+.+.+.+ |+++.+.+..+.+
T Consensus 118 ~~i~---g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-----Vtli~~~~~~l~~ 187 (444)
T PRK09564 118 PPIK---NINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKN-----VRIIQLEDRILPD 187 (444)
T ss_pred CCCC---CcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCc-----EEEEeCCcccCch
Confidence 8777 5432 124444433221100 000123578999999999999999999887654 9999887642211
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ..+ .
T Consensus 188 ~~~-----------~~~----------------------------~---------------------------------- 194 (444)
T PRK09564 188 SFD-----------KEI----------------------------T---------------------------------- 194 (444)
T ss_pred hcC-----------HHH----------------------------H----------------------------------
Confidence 110 000 0
Q ss_pred ccCCchhhhhccCeEEEEeCc-eeEEeCCc---EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccc
Q 010421 321 IMPEGFFSEAEKGKIVFKRAS-KWWFWKGG---LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPL 396 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~---v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (511)
+.+.+.+++.+|+++.+. +.++++++ .+..++.++++|.||+|||++++..+++-.+ +....++.+.+
T Consensus 195 ---~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~g-----l~~~~~g~i~v 266 (444)
T PRK09564 195 ---DVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTG-----LKTLKNGAIIV 266 (444)
T ss_pred ---HHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcC-----ccccCCCCEEE
Confidence 001123344456666654 66665443 2234556799999999999999876533211 11122334444
Q ss_pred eeeecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCC
Q 010421 397 YRGTIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 397 y~~~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 437 (511)
...+ .++.||+|++|..... .....|..||+.+|..|.|.
T Consensus 267 d~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~ 317 (444)
T PRK09564 267 DEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGR 317 (444)
T ss_pred CCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCC
Confidence 4433 3578999999976532 23467999999999999874
No 27
>PRK14694 putative mercuric reductase; Provisional
Probab=99.93 E-value=7.1e-24 Score=219.58 Aligned_cols=304 Identities=16% Similarity=0.164 Sum_probs=185.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCcc-------c-cCCCCCCCCCC--
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDY-------E-FTDFPWPNRDD-- 70 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~-- 70 (511)
+.+||+|||||++|+++|..| .|.+|+|||+. .+||+|.. ++| .|+..+ . ....++.....
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n---~Gc---iPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN---IGC---VPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec---CCc---cccHHHHHHHHHHHHHhhccccCCcccC
Confidence 458999999999999999999 89999999995 79999864 333 333322 1 11111100000
Q ss_pred CCCCChHHHHHHHHHHHHhcC-------CC--CceE-eeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCce
Q 010421 71 PGFPSYTEILDYLESYAKHFD-------VF--KCVR-FNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSI 140 (511)
Q Consensus 71 ~~~~~~~~~~~yl~~~~~~~~-------~~--~~i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (511)
..-....++.++.+...+.+. +. ..+. ...+|..++ ...|+|++.++. .
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id------------------~~~~~V~~~~g~---~ 136 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD------------------ERTLTVTLNDGG---E 136 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec------------------CCEEEEEecCCC---e
Confidence 111244555555554433221 10 0122 223444443 345778776542 2
Q ss_pred eEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhc
Q 010421 141 QRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESN 220 (511)
Q Consensus 141 ~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~ 220 (511)
.++.||+||+||| ..|..|++| |.+.. ..+++.+...+ ...+++|+|||+|.+|+|+|..|++.+
T Consensus 137 ~~~~~d~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~~~l-------~~~~~~vvViG~G~~G~E~A~~l~~~g 201 (468)
T PRK14694 137 QTVHFDRAFIGTG---ARPAEPPVP---GLAET--PYLTSTSALEL-------DHIPERLLVIGASVVALELAQAFARLG 201 (468)
T ss_pred EEEECCEEEEeCC---CCCCCCCCC---CCCCC--ceEcchhhhch-------hcCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 3689999999999 568888888 65432 24444332221 134689999999999999999999887
Q ss_pred CCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcc
Q 010421 221 QGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLL 300 (511)
Q Consensus 221 ~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
.+ |+++.+.. ++|... ..
T Consensus 202 ~~-----Vtlv~~~~--~l~~~~-----------~~-------------------------------------------- 219 (468)
T PRK14694 202 SR-----VTVLARSR--VLSQED-----------PA-------------------------------------------- 219 (468)
T ss_pred Ce-----EEEEECCC--CCCCCC-----------HH--------------------------------------------
Confidence 54 99998742 333221 00
Q ss_pred cCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc--EEE-cCCceeeccEEEEecCCCCccccc
Q 010421 301 KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG--LEF-EDNTKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 301 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~--v~~-~dG~~~~~D~VI~aTG~~~~~~~~ 376 (511)
+.+.+.+.+++.+|+++.+. +.+++.++ +.+ .++.++++|.||+|||.+|+..++
T Consensus 220 ---------------------~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l 278 (468)
T PRK14694 220 ---------------------VGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENL 278 (468)
T ss_pred ---------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCC
Confidence 00111123445567777764 66665432 332 234469999999999999997653
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.. .-.++. ..++.+.+..++ .++.||+|++|.... ....+.+..|++.+|..+.|.
T Consensus 279 ~l---~~~g~~-~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 279 NL---ESIGVE-TERGAIRIDEHL-QTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred Cc---hhcCcc-cCCCeEeeCCCc-ccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 21 101111 123334444443 357899999998764 334577889999999998764
No 28
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.93 E-value=1.3e-24 Score=225.67 Aligned_cols=316 Identities=17% Similarity=0.197 Sum_probs=186.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC--------CcCccccC-CCcCceeccCCCCccc-----cCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD--------SIGGIWKS-CSYNSTKLQSHRSDYE-----FTDFP 64 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~--------~~GG~w~~-~~~~~~~~~~~~~~~~-----~~~~~ 64 (511)
|+-.+||+||||||+|+.||..+ .|.+|+|+|+.. .+||++.. ..+|.-.+..+...+. ...+.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 44458999999999999999999 899999999631 48998643 1444322211111110 01111
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 65 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
+.. .. -....++.++++..++.++. .+....++..|+.... .+.+ .+..+|.+.+.+ ....+.
T Consensus 82 ~~~--~~-~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~v~~i~g-------~a~~---~~~~~v~v~~~~--~~~~i~ 144 (499)
T PTZ00052 82 WKT--SS-SFNWGKLVTTVQNHIRSLNF--SYRTGLRSSKVEYING-------LAKL---KDEHTVSYGDNS--QEETIT 144 (499)
T ss_pred CCC--CC-CcCHHHHHHHHHHHHHHhhH--HHHHHhhhcCcEEEEE-------EEEE---ccCCEEEEeeCC--CceEEE
Confidence 111 01 34667888888877766543 2222222211111000 0000 122356665432 123689
Q ss_pred eCEEEEeecccCCCCCCCC-CCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCC
Q 010421 145 FEFLVVCTGKYGDVPIIPA-FPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGP 223 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p~-~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 223 (511)
||+|||||| +.|..|. +| |.+.. .+.+.+...+ ...+++|+|||+|.+|+|+|..|+..+.+
T Consensus 145 ~d~lIIATG---s~p~~p~~i~---G~~~~---~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~~G~~- 207 (499)
T PTZ00052 145 AKYILIATG---GRPSIPEDVP---GAKEY---SITSDDIFSL-------SKDPGKTLIVGASYIGLETAGFLNELGFD- 207 (499)
T ss_pred CCEEEEecC---CCCCCCCCCC---Cccce---eecHHHHhhh-------hcCCCeEEEECCCHHHHHHHHHHHHcCCc-
Confidence 999999999 4677774 77 54321 2333333221 12457999999999999999999988765
Q ss_pred CCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCC
Q 010421 224 EGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYG 303 (511)
Q Consensus 224 ~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (511)
||++.|+ . +++..+ ...
T Consensus 208 ----Vtli~~~-~-~l~~~d-------~~~-------------------------------------------------- 224 (499)
T PTZ00052 208 ----VTVAVRS-I-PLRGFD-------RQC-------------------------------------------------- 224 (499)
T ss_pred ----EEEEEcC-c-ccccCC-------HHH--------------------------------------------------
Confidence 9999874 2 233221 000
Q ss_pred CCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--C--cEEEcCCceeeccEEEEecCCCCccccccc
Q 010421 304 LKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--G--GLEFEDNTKLEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 304 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~ 378 (511)
.+.+.+.+++.+|+++.+. +.+++. + .|++.+|+++++|.||+|+|++|+..++.+
T Consensus 225 -------------------~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l 285 (499)
T PTZ00052 225 -------------------SEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNL 285 (499)
T ss_pred -------------------HHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCc
Confidence 0011123444556776664 445542 2 256778988999999999999999765321
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHhcCC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.-.++..++++.+.+... .++.||+|++|.... +...+.|..|++.+|..+.+.
T Consensus 286 ---~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 286 ---NAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred ---hhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 101111122332222222 467899999998653 345678999999999988764
No 29
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=6.4e-24 Score=219.95 Aligned_cols=317 Identities=15% Similarity=0.172 Sum_probs=178.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc-----cCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE-----FTDFPWPNRDDPG 72 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 72 (511)
|+..+||+||||||+|++||..| .|.+|+|+|+ ..+||++... ..|+-.+........ ...+.... ..
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~---~~ 76 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG---EV 76 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc---Cc
Confidence 44568999999999999999999 8999999998 5789987652 223211100000000 00011100 11
Q ss_pred CCChHHHHHHHHHHHHhcCCCCceEe-eeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEe
Q 010421 73 FPSYTEILDYLESYAKHFDVFKCVRF-NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVC 151 (511)
Q Consensus 73 ~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlA 151 (511)
......+....+...++..-.-...+ ...|+.++.... + .+.. +|.+...+ ++..++.||+||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~----------~-~~~~--~v~v~~~~-g~~~~~~~d~lViA 142 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGT----------F-TDAN--TLEVDLND-GGTETVTFDNAIIA 142 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE----------E-cCCC--EEEEEecC-CCeeEEEcCEEEEe
Confidence 12223333332222211100000011 012333331000 0 0022 34443322 22337899999999
Q ss_pred ecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 010421 152 TGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMI 231 (511)
Q Consensus 152 tG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~ 231 (511)
||+ .|..| | |.+ ..+.++.+.+... ....+++|+|||+|.+|+|+|..+++.+.+ |+++
T Consensus 143 TGs---~p~~~--p---g~~-~~~~v~~~~~~~~-------~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~-----Vtlv 201 (466)
T PRK07818 143 TGS---STRLL--P---GTS-LSENVVTYEEQIL-------SRELPKSIVIAGAGAIGMEFAYVLKNYGVD-----VTIV 201 (466)
T ss_pred CCC---CCCCC--C---CCC-CCCcEEchHHHhc-------cccCCCeEEEECCcHHHHHHHHHHHHcCCe-----EEEE
Confidence 994 55543 4 432 1223444332111 113568999999999999999999988765 9999
Q ss_pred EecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccc
Q 010421 232 VRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFE 311 (511)
Q Consensus 232 ~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 311 (511)
.+.+. ++|..+ ..
T Consensus 202 ~~~~~-~l~~~d-----------~~------------------------------------------------------- 214 (466)
T PRK07818 202 EFLDR-ALPNED-----------AE------------------------------------------------------- 214 (466)
T ss_pred ecCCC-cCCccC-----------HH-------------------------------------------------------
Confidence 98774 333321 00
Q ss_pred cccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEc--CCc--eeeccEEEEecCCCCcccccccCCCc
Q 010421 312 EDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFE--DNT--KLEADVVILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~--dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~ 382 (511)
+.+.+.+.+++.+|+++.+. +.++++++ +++. ||+ ++++|.||+|+|++|+..++.+ .
T Consensus 215 ----------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l---~ 281 (466)
T PRK07818 215 ----------VSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGL---E 281 (466)
T ss_pred ----------HHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCc---h
Confidence 00111234555678888765 77775432 3444 674 5999999999999999754211 1
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
..++....++.+.+...+ .++.||+|++|.... ....+.|..|++.+|..+.|.
T Consensus 282 ~~g~~~~~~g~i~vd~~~-~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 282 KTGVALTDRGAIAIDDYM-RTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGA 336 (466)
T ss_pred hcCcEECCCCcEeeCCCc-ccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 111111233344454443 357899999998764 344678999999999999874
No 30
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.93 E-value=8.6e-24 Score=217.48 Aligned_cols=296 Identities=13% Similarity=0.088 Sum_probs=176.8
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC-cCccccCC-CcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS-IGGIWKSC-SYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~-~GG~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
++.+||+||||||+|++||..| .|.+|+|+|+++. +||++... ..| ...+-.... ......
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP-------~k~~~~~~~--------~~~~~~ 65 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIP-------TKTLLVAAE--------KNLSFE 65 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCcccc-------chHhhhhhh--------cCCCHH
Confidence 1468999999999999999999 8999999999864 69875431 122 111111000 001122
Q ss_pred HHHHHHH-----------HHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeC
Q 010421 78 EILDYLE-----------SYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFE 146 (511)
Q Consensus 78 ~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 146 (511)
++.++.+ ....+.++ .+..++ +..++ + .+|.+..++ ...++.||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g~-~~~~~------------------~--~~v~v~~~~--~~~~~~~d 120 (438)
T PRK07251 66 QVMATKNTVTSRLRGKNYAMLAGSGV--DLYDAE-AHFVS------------------N--KVIEVQAGD--EKIELTAE 120 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEcc------------------C--CEEEEeeCC--CcEEEEcC
Confidence 2222222 22223333 333322 22111 1 145555432 12368999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCC
Q 010421 147 FLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQ 226 (511)
Q Consensus 147 ~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~ 226 (511)
+||+||| ..|+.|.+| |.+... .++++.++..+ ...+++|+|||+|.+|+|+|..+++.+.+
T Consensus 121 ~vViATG---s~~~~p~i~---G~~~~~-~v~~~~~~~~~-------~~~~~~vvIIGgG~~g~e~A~~l~~~g~~---- 182 (438)
T PRK07251 121 TIVINTG---AVSNVLPIP---GLADSK-HVYDSTGIQSL-------ETLPERLGIIGGGNIGLEFAGLYNKLGSK---- 182 (438)
T ss_pred EEEEeCC---CCCCCCCCC---CcCCCC-cEEchHHHhcc-------hhcCCeEEEECCCHHHHHHHHHHHHcCCe----
Confidence 9999999 457788888 654332 25555444332 13478999999999999999999987654
Q ss_pred cEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCC
Q 010421 227 PCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKP 306 (511)
Q Consensus 227 ~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 306 (511)
|+++.|.+.. +|... ... ..
T Consensus 183 -Vtli~~~~~~-l~~~~-----------~~~----------------------------~~------------------- 202 (438)
T PRK07251 183 -VTVLDAASTI-LPREE-----------PSV----------------------------AA------------------- 202 (438)
T ss_pred -EEEEecCCcc-CCCCC-----------HHH----------------------------HH-------------------
Confidence 9999998752 33221 000 00
Q ss_pred CCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--cE-EEcCCceeeccEEEEecCCCCcccccccCCCc
Q 010421 307 DHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--GL-EFEDNTKLEADVVILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~v-~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~ 382 (511)
.+.+.+++.+|+++.+. +.+++.+ ++ +..+|+++++|.||+|||.+|+.....+ .
T Consensus 203 ------------------~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l---~ 261 (438)
T PRK07251 203 ------------------LAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGL---E 261 (438)
T ss_pred ------------------HHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCc---h
Confidence 00123444567777664 6666543 33 3346778999999999999998654221 1
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
-.++....++.+.+... +.++.||+|++|..... ...+.+..|++.++..+.+.
T Consensus 262 ~~~~~~~~~g~i~vd~~-~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 262 NTDIELTERGAIKVDDY-CQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred hcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 01111123344445443 34578999999987653 33467777888888887654
No 31
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=9.3e-24 Score=218.38 Aligned_cols=308 Identities=15% Similarity=0.146 Sum_probs=179.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----ccCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----EFTDFPWPNRDDPGF 73 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 73 (511)
|+..+||+||||||+|+.+|..+ .|.+|+|+|+.+.+||+|... ++|...+-.....+ ....+.+... ...
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~--~~~ 78 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG--EPK 78 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC--CCC
Confidence 66789999999999999999999 899999999988899987542 34442211100000 0111111100 111
Q ss_pred CChHHHHHHHHHHH-----------HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 74 PSYTEILDYLESYA-----------KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 74 ~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
....++.++.+... +..++ .+..+ ++..++ .. +|.+...+ ++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~a~~~~------------------~~--~v~v~~~~-g~~~~ 134 (471)
T PRK06467 79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKV--TVVNG-LGKFTG------------------GN--TLEVTGED-GKTTV 134 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc------------------CC--EEEEecCC-CceEE
Confidence 23344444433332 33344 33332 232222 11 34444322 22237
Q ss_pred EEeCEEEEeecccCCCCC-CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 143 YGFEFLVVCTGKYGDVPI-IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 143 ~~~d~vVlAtG~~~~~p~-~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
+.||+||+|||+ .|. .|.++ +.. ..++.+.+...+ ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 135 ~~~d~lViATGs---~p~~~p~~~---~~~---~~v~~~~~~~~~-------~~~~~~vvIiGgG~iG~E~A~~l~~~G~ 198 (471)
T PRK06467 135 IEFDNAIIAAGS---RPIQLPFIP---HDD---PRIWDSTDALEL-------KEVPKRLLVMGGGIIGLEMGTVYHRLGS 198 (471)
T ss_pred EEcCEEEEeCCC---CCCCCCCCC---CCC---CcEEChHHhhcc-------ccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 899999999994 565 34444 321 124444433322 1246899999999999999999998876
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ ||++.+.+. ++|..+ .. +..
T Consensus 199 ~-----Vtlv~~~~~-il~~~d-------~~--------------------------------~~~-------------- 219 (471)
T PRK06467 199 E-----VDVVEMFDQ-VIPAAD-------KD--------------------------------IVK-------------- 219 (471)
T ss_pred C-----EEEEecCCC-CCCcCC-------HH--------------------------------HHH--------------
Confidence 5 999999875 333322 00 000
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCc--EEEcCC----ceeeccEEEEecCCCCc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGG--LEFEDN----TKLEADVVILCTGYDGK 372 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~--v~~~dG----~~~~~D~VI~aTG~~~~ 372 (511)
.+.+.+++. |+++.+. +.+++ +++ ++++++ +++++|.||+|+|++|+
T Consensus 220 -----------------------~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 220 -----------------------VFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred -----------------------HHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 011123333 5555543 55554 333 334442 35999999999999999
Q ss_pred ccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 373 KKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
..++.. ...++..++++.+.+..++ .++.||+|++|.... +...+.|..|++.+|..+.|.
T Consensus 276 ~~~l~~---~~~gl~~~~~G~I~Vd~~~-~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 276 GKLLDA---EKAGVEVDERGFIRVDKQC-RTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred CCccCh---hhcCceECCCCcEeeCCCc-ccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 764221 1111212334444444433 357899999998754 344678999999999999774
No 32
>PRK07846 mycothione reductase; Reviewed
Probab=99.92 E-value=1.2e-23 Score=216.17 Aligned_cols=310 Identities=14% Similarity=0.094 Sum_probs=182.2
Q ss_pred CeEEEECCCHHHHHHHHhccCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCChHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 79 (511)
+||+||||||+|..+|..+.|.+|+|+|+ +.+||++... +.|.-.+......+. .+.+.+... ..-....++
T Consensus 2 yD~vVIG~G~~g~~aa~~~~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERFADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE--LDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHHCCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC--CCcCCHHHH
Confidence 79999999999999887778999999998 5789987652 233322111111111 011111100 112345666
Q ss_pred HHHHHHHHHhcCCC-CceE-ee-eEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 80 LDYLESYAKHFDVF-KCVR-FN-SKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 80 ~~yl~~~~~~~~~~-~~i~-~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++.....+++.-. .... +. ..|.-+... +.+ .+..+|++.++. ++.||+||+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~----------a~~---~~~~~V~v~~g~-----~~~~d~lViATG--- 137 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH----------ARF---IGPKTLRTGDGE-----EITADQVVIAAG--- 137 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEE----------EEE---ecCCEEEECCCC-----EEEeCEEEEcCC---
Confidence 66665554443110 0000 10 011111100 000 111256665443 789999999999
Q ss_pred CCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 157 DVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 157 ~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+.|..|.+| |.+.. .+..+.+...+ ...+++|+|||+|.+|+|+|..+++.+.+ |+++.|++.
T Consensus 138 s~p~~p~i~---g~~~~--~~~~~~~~~~l-------~~~~~~vvIIGgG~iG~E~A~~l~~~G~~-----Vtli~~~~~ 200 (451)
T PRK07846 138 SRPVIPPVI---ADSGV--RYHTSDTIMRL-------PELPESLVIVGGGFIAAEFAHVFSALGVR-----VTVVNRSGR 200 (451)
T ss_pred CCCCCCCCC---CcCCc--cEEchHHHhhh-------hhcCCeEEEECCCHHHHHHHHHHHHcCCe-----EEEEEcCCc
Confidence 578888888 53321 12233332221 13468999999999999999999988754 999999875
Q ss_pred eeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccc
Q 010421 237 WTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYAS 316 (511)
Q Consensus 237 ~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 316 (511)
. +|..+ . .. ..
T Consensus 201 l-l~~~d-------~----~~----------------------------~~----------------------------- 211 (451)
T PRK07846 201 L-LRHLD-------D----DI----------------------------SE----------------------------- 211 (451)
T ss_pred c-ccccC-------H----HH----------------------------HH-----------------------------
Confidence 2 22221 0 00 00
Q ss_pred ccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCC
Q 010421 317 CQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPS 391 (511)
Q Consensus 317 ~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
.+.+.++ .+|+++.+. +.+++.+ + |.+.+|+++++|.||+|||++|+..++.. .-.++..+++
T Consensus 212 --------~l~~l~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~---~~~gl~~~~~ 279 (451)
T PRK07846 212 --------RFTELAS-KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDA---AAAGVDVDED 279 (451)
T ss_pred --------HHHHHHh-cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCc---hhcCceECCC
Confidence 0001122 236766654 6666533 3 55678888999999999999999765321 1111111334
Q ss_pred CcccceeeecCCCCCceEEEeecccch-hhhhHHHHHHHHHHHhcCC
Q 010421 392 GLLPLYRGTIHPLIPNMAFVGYIESVS-NLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 392 ~~~~ly~~~~~~~~pnl~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 437 (511)
+.+.+..++ .++.||+|++|...... ..+.+..|++.++..+.+.
T Consensus 280 G~i~Vd~~~-~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 280 GRVVVDEYQ-RTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred CcEeECCCc-ccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 445454443 37789999999876543 3468999999999998764
No 33
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.92 E-value=8.6e-24 Score=228.08 Aligned_cols=298 Identities=21% Similarity=0.237 Sum_probs=175.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+||||||||++||..| .|++|+|||+.+.+||.+.. ..|+.+ ...++.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~-~IP~~R------------------------lp~evL 592 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN-IIPQFR------------------------IPAELI 592 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee-eccccc------------------------ccHHHH
Confidence 357999999999999999999 89999999999999998765 332211 113344
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
++..+.+.++++ .+++++.| .+.. .+.. ...||+||||||+. .|.
T Consensus 593 ~~die~l~~~GV--e~~~gt~V-di~l-------------------------e~L~-----~~gYDaVILATGA~--~~~ 637 (1019)
T PRK09853 593 QHDIEFVKAHGV--KFEFGCSP-DLTV-------------------------EQLK-----NEGYDYVVVAIGAD--KNG 637 (1019)
T ss_pred HHHHHHHHHcCC--EEEeCcee-EEEh-------------------------hhhe-----eccCCEEEECcCCC--CCC
Confidence 444455666787 78888776 2221 1111 44599999999974 355
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.+.++ |.+ ..++++.++.............+|+|+|||+|.+|+|+|..+.+.+.. ++|+++.|++.-.+|
T Consensus 638 ~l~Ip---G~~---~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGa---keVTLVyRr~~~~MP 708 (1019)
T PRK09853 638 GLKLE---GGN---QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGV---EKVTVVYRRTKQEMP 708 (1019)
T ss_pred CCCCC---Ccc---CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCC---ceEEEEEccCccccc
Confidence 55666 533 124443333210000001234689999999999999999988877431 369999998743333
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ..+... +..-+. +... +
T Consensus 709 A~~---------------------------------------eEle~A----leeGVe-----~~~~---------~--- 728 (1019)
T PRK09853 709 AWR---------------------------------------EEYEEA----LEDGVE-----FKEL---------L--- 728 (1019)
T ss_pred ccH---------------------------------------HHHHHH----HHcCCE-----EEeC---------C---
Confidence 221 000000 000000 0000 0
Q ss_pred ccCCchhhhhccCeEEEEeCceeEEeCCc----EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccc
Q 010421 321 IMPEGFFSEAEKGKIVFKRASKWWFWKGG----LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPL 396 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~i~~~~~~~----v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (511)
.... ...+|++.+..-.+...+++| +...++.++++|.||+|+|++++..+.+..+ +..+..+.+.+
T Consensus 729 -~p~~---I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~G-----L~ld~~G~I~V 799 (1019)
T PRK09853 729 -NPES---FDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANG-----IPLDKKGWPVV 799 (1019)
T ss_pred -ceEE---EEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcC-----ccccCCCCEEe
Confidence 0000 001233332211111112222 2223455799999999999999876543211 11122333333
Q ss_pred eeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCCCC
Q 010421 397 YRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDKFK 439 (511)
Q Consensus 397 y~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~~~ 439 (511)
. ....++.|++|++|.... +.+...|..|++.+|..+.+...
T Consensus 800 D-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 800 D-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred C-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 2 234467899999998753 45567899999999999877554
No 34
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.92 E-value=2.3e-23 Score=214.80 Aligned_cols=322 Identities=14% Similarity=0.127 Sum_probs=183.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCC--------CCcCccccCC-CcCceeccCCCCccc----cCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEAS--------DSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWP 66 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~--------~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~ 66 (511)
+.+||+|||+|++|..||..+ . |.+|+|+|+. ..+||++... +.|.-.+......+. ...+.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 568999999999999999999 4 7999999984 5799987652 333322211111110 1111110
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcC--CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC---CCCcee
Q 010421 67 NRDDPGFPSYTEILDYLESYAKHFD--VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH---NSNSIQ 141 (511)
Q Consensus 67 ~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~ 141 (511)
......-.....+.++.+.+.++.. ....+.-...|+-+.-. +.+ .+..+|.+... +++..+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~----------a~f---~~~~~v~V~~~~~~~~~~~~ 148 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW----------GAL---EDKNVVLVRESADPKSAVKE 148 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE----------EEE---ccCCEEEEeeccCCCCCcce
Confidence 0000111233344444433332210 00000000011111110 000 11224666532 111124
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
.+.||+|||||| +.|..|++| |.+. ++.+.+...+ ...+++|+|||+|.+|+|+|..++....
T Consensus 149 ~~~~d~lIIATG---s~p~~p~i~---G~~~----~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~~~~l~~ 211 (486)
T TIGR01423 149 RLQAEHILLATG---SWPQMLGIP---GIEH----CISSNEAFYL-------DEPPRRVLTVGGGFISVEFAGIFNAYKP 211 (486)
T ss_pred EEECCEEEEecC---CCCCCCCCC---Chhh----eechhhhhcc-------ccCCCeEEEECCCHHHHHHHHHHHHhcc
Confidence 799999999999 568888888 6542 2333222211 1346899999999999999987766521
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
. +.+||++.|.+.. +|..+ . .
T Consensus 212 ~--G~~Vtli~~~~~i-l~~~d-------~----~--------------------------------------------- 232 (486)
T TIGR01423 212 R--GGKVTLCYRNNMI-LRGFD-------S----T--------------------------------------------- 232 (486)
T ss_pred C--CCeEEEEecCCcc-ccccC-------H----H---------------------------------------------
Confidence 1 2359999998752 33322 0 0
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--C---cEEEcCCceeeccEEEEecCCCCcccc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--G---GLEFEDNTKLEADVVILCTGYDGKKKL 375 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~---~v~~~dG~~~~~D~VI~aTG~~~~~~~ 375 (511)
+.+.+.+.+++.+|+++.+. +.+++. + .|.+.+|+++++|.||+|||++|+..+
T Consensus 233 --------------------~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 233 --------------------LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred --------------------HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 00111123445567777765 666653 2 266778888999999999999999764
Q ss_pred cccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 376 KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
+.+ .-.++..++++.+.+..++ .++.||+|++|..... ...+.|..|++.++..+.|.
T Consensus 293 l~l---~~~gl~~~~~G~I~Vd~~l-~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 293 LQL---DKVGVELTKKGAIQVDEFS-RTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred CCc---hhhCceECCCCCEecCCCC-cCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 321 1011112334445555444 3678999999987653 34578999999999998763
No 35
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.92 E-value=4.7e-24 Score=220.99 Aligned_cols=302 Identities=17% Similarity=0.150 Sum_probs=180.6
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-CCcCceeccCCCCccccCC---CCCCCCCCCCCCCh--
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHRSDYEFTD---FPWPNRDDPGFPSY-- 76 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 76 (511)
+||+||||||+|+++|..+ .|.+|+|+|+.. +||+|.. ...|...+......+++.. +.+... ...+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~--~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAA--TVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccC--CCccCHHH
Confidence 6999999999999999999 899999999964 9999864 1233322211111111110 111000 111122
Q ss_pred -----HHHHHHH-----HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeC
Q 010421 77 -----TEILDYL-----ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFE 146 (511)
Q Consensus 77 -----~~~~~yl-----~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 146 (511)
+++..++ ....+++++ .+..+ ++..++ ..+|.+.++. ..+.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~~~--------------------~~~v~v~~g~----~~~~~~ 130 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGV--DYLRG-RARFKD--------------------PKTVKVDLGR----EVRGAK 130 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCc--EEEEE-EEEEcc--------------------CCEEEEcCCe----EEEEeC
Confidence 2332222 223344454 33333 222211 1246664421 257899
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCC
Q 010421 147 FLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQ 226 (511)
Q Consensus 147 ~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~ 226 (511)
+||+||| ..|..|.+| |.+.. .++++.+.... ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 131 ~lIiATG---s~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvIIGgG~~g~E~A~~l~~~g~~---- 191 (463)
T TIGR02053 131 RFLIATG---ARPAIPPIP---GLKEA--GYLTSEEALAL-------DRIPESLAVIGGGAIGVELAQAFARLGSE---- 191 (463)
T ss_pred EEEEcCC---CCCCCCCCC---CcccC--ceECchhhhCc-------ccCCCeEEEECCCHHHHHHHHHHHHcCCc----
Confidence 9999999 568888888 65543 24555444321 12358999999999999999999988765
Q ss_pred cEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCC
Q 010421 227 PCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKP 306 (511)
Q Consensus 227 ~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 306 (511)
||++.|.+. ++|..+ ... .
T Consensus 192 -Vtli~~~~~-~l~~~d-----------~~~----------------------------~-------------------- 210 (463)
T TIGR02053 192 -VTILQRSDR-LLPREE-----------PEI----------------------------S-------------------- 210 (463)
T ss_pred -EEEEEcCCc-CCCccC-----------HHH----------------------------H--------------------
Confidence 999999875 333321 000 0
Q ss_pred CCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEc---CCceeeccEEEEecCCCCccccccc
Q 010421 307 DHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFE---DNTKLEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~---dG~~~~~D~VI~aTG~~~~~~~~~~ 378 (511)
..+.+.+++.+|+++.+. |.+++.+ + +.+. +++++++|.||+|||++++...+.
T Consensus 211 -----------------~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~- 272 (463)
T TIGR02053 211 -----------------AAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLG- 272 (463)
T ss_pred -----------------HHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCC-
Confidence 001123445567777765 6666533 2 3333 235699999999999999875211
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
+ ...++..++++.+.+...+ .++.||+|++|..... ...+.|..|++.+|..+.+.
T Consensus 273 l--~~~g~~~~~~G~i~vd~~~-~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 273 L--EKAGVKLDERGGILVDETL-RTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred c--cccCCEECCCCcEeECCCc-cCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 1 1111111334445454443 4578999999987654 33578999999999998774
No 36
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.92 E-value=6.7e-24 Score=230.64 Aligned_cols=293 Identities=17% Similarity=0.179 Sum_probs=188.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc------cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL------RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFP 74 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (511)
|+ +++|+|||+|++|+.+|..| .+++|+||++++.+ .|..+.+. . .+. . .
T Consensus 1 m~-~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~-------~Y~r~~L~--~---~~~---------~--~ 56 (847)
T PRK14989 1 MS-KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI-------AYDRVHLS--S---YFS---------H--H 56 (847)
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC-------cccCCcch--H---hHc---------C--C
Confidence 53 46899999999999999998 24789999998776 33322221 0 000 0 1
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
..+++......+.++.++ .++.+++|++++.. ...|.+.++. .+.||+||+|||
T Consensus 57 ~~~~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~------------------~~~V~~~~G~-----~i~yD~LVIATG- 110 (847)
T PRK14989 57 TAEELSLVREGFYEKHGI--KVLVGERAITINRQ------------------EKVIHSSAGR-----TVFYDKLIMATG- 110 (847)
T ss_pred CHHHccCCCHHHHHhCCC--EEEcCCEEEEEeCC------------------CcEEEECCCc-----EEECCEEEECCC-
Confidence 123333333445556777 78888999998862 1245555543 789999999999
Q ss_pred cCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 155 YGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 155 ~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
+.|..|.+| |.+.. .++......+.... ......+++++|||+|.+|+|+|..|++.+.+ |+++.+.
T Consensus 111 --s~p~~p~ip---G~~~~--~v~~~rt~~d~~~l-~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~-----VtvVe~~ 177 (847)
T PRK14989 111 --SYPWIPPIK---GSETQ--DCFVYRTIEDLNAI-EACARRSKRGAVVGGGLLGLEAAGALKNLGVE-----THVIEFA 177 (847)
T ss_pred --CCcCCCCCC---CCCCC--CeEEECCHHHHHHH-HHHHhcCCeEEEECCCHHHHHHHHHHHHcCCe-----EEEEecc
Confidence 468888888 65421 12222222111100 01224678999999999999999999988765 9999997
Q ss_pred CceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccc
Q 010421 235 THWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDY 314 (511)
Q Consensus 235 ~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 314 (511)
+.+ +|+.. +. ...
T Consensus 178 ~~l-l~~~l------d~--------------------------------~~~---------------------------- 190 (847)
T PRK14989 178 PML-MAEQL------DQ--------------------------------MGG---------------------------- 190 (847)
T ss_pred ccc-hhhhc------CH--------------------------------HHH----------------------------
Confidence 752 22211 00 000
Q ss_pred ccccccccCCchhhhhccCeEEEEeCc-eeEEeCC------cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccc
Q 010421 315 ASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG------GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLL 387 (511)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~------~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~ 387 (511)
..+.+.+++.+|+++.+. +.++.++ .|+++||+++++|.||+|+|++|+..+....+ +.
T Consensus 191 ---------~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~G-----l~ 256 (847)
T PRK14989 191 ---------EQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCG-----LA 256 (847)
T ss_pred ---------HHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcC-----cc
Confidence 011133455567777765 6677532 36789999999999999999999976532111 11
Q ss_pred cCCCCcccceeeecCCCCCceEEEeecccc-----hhhhhHHHHHHHHHHHhcCCC
Q 010421 388 EHPSGLLPLYRGTIHPLIPNMAFVGYIESV-----SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 388 ~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.++.+.+.+..++ .++.||+|++|..... .....+..||+.+|..|.|..
T Consensus 257 ~~~~G~I~VD~~l-~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 257 VAPRGGIVINDSC-QTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred CCCCCcEEECCCC-cCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 2334455555544 3568999999976532 234568889999999998753
No 37
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.92 E-value=6.1e-24 Score=215.56 Aligned_cols=292 Identities=13% Similarity=0.107 Sum_probs=176.5
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
...++|+|||||++|+.||..| .+ .+|+|++++... .|.. ...++. +...+..+ ..+...
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~-------~y~r--~~l~~~---~~~~~~~~---~~~~~~- 64 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL-------PYER--PPLSKS---MLLEDSPQ---LQQVLP- 64 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC-------CCCC--CCCCHH---HHCCCCcc---ccccCC-
Confidence 0457899999999999999999 44 479999997654 2211 111110 10000000 011111
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~ 157 (511)
..+..+.++ .++.+++|..++.. . ..|.+.++. ++.||+||+|||+
T Consensus 65 ------~~~~~~~~i--~~~~g~~V~~id~~-----------------~-~~v~~~~g~-----~~~yd~LViATGs--- 110 (396)
T PRK09754 65 ------ANWWQENNV--HLHSGVTIKTLGRD-----------------T-RELVLTNGE-----SWHWDQLFIATGA--- 110 (396)
T ss_pred ------HHHHHHCCC--EEEcCCEEEEEECC-----------------C-CEEEECCCC-----EEEcCEEEEccCC---
Confidence 112234566 77888899999862 1 246665554 7999999999994
Q ss_pred CCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
.|+.|+++ +.. ...++......+... .......+++|+|||+|.+|+|+|..|++.+.+ ||++.+.+..
T Consensus 111 ~~~~~p~~---~~~--~~~v~~~~~~~da~~-l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~-----Vtlv~~~~~~ 179 (396)
T PRK09754 111 AARPLPLL---DAL--GERCFTLRHAGDAAR-LREVLQPERSVVIVGAGTIGLELAASATQRRCK-----VTVIELAATV 179 (396)
T ss_pred CCCCCCCC---CcC--CCCEEecCCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCe-----EEEEecCCcc
Confidence 56655554 221 112333222211100 001234679999999999999999999987654 9999987752
Q ss_pred eecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccc
Q 010421 238 TVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASC 317 (511)
Q Consensus 238 ~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 317 (511)
+++.. + ...
T Consensus 180 -l~~~~------~----~~~------------------------------------------------------------ 188 (396)
T PRK09754 180 -MGRNA------P----PPV------------------------------------------------------------ 188 (396)
T ss_pred -hhhhc------C----HHH------------------------------------------------------------
Confidence 22110 0 000
Q ss_pred cccccCCchhhhhccCeEEEEeCc-eeEEeCCc---EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCc
Q 010421 318 QMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG---LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGL 393 (511)
Q Consensus 318 ~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~---v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
.+.+.+.+++.+|+++.+. +.+++.++ +.+.||+++++|.||+|+|.+++..+....+ +. .++.
T Consensus 189 -----~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~g-----l~--~~~g 256 (396)
T PRK09754 189 -----QRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREAN-----LD--TANG 256 (396)
T ss_pred -----HHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcC-----CC--cCCC
Confidence 0001123444567777664 67776432 5678999999999999999999876533211 11 1223
Q ss_pred ccceeeecCCCCCceEEEeeccc----------chhhhhHHHHHHHHHHHhcCCC
Q 010421 394 LPLYRGTIHPLIPNMAFVGYIES----------VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 394 ~~ly~~~~~~~~pnl~~iG~~~~----------~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+.+..++ .++.||+|++|.... ...+..|..||+.+|+.+.|..
T Consensus 257 i~vd~~~-~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 257 IVIDEAC-RTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred EEECCCC-ccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 4343333 357899999996542 1234689999999999998753
No 38
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=7.2e-23 Score=212.45 Aligned_cols=314 Identities=18% Similarity=0.136 Sum_probs=183.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcccc----CCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYEF----TDFPWPNRDDPGF 73 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 73 (511)
|...+||+||||||+|+++|..| .|.+|+|+|+. .+||+|... +.|.-.+......+.. ..+.+... ...
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS--GPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC--CCc
Confidence 77789999999999999999999 89999999995 899998652 2232221111111110 01111100 001
Q ss_pred CChHH-------HHHHHH----HHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 74 PSYTE-------ILDYLE----SYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 74 ~~~~~-------~~~yl~----~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
..... +.+++. ...++.++ .+.. .++..++..... +.++.++|.+.++ +..+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~-g~a~~i~~~~~~-----------~~~~~~~v~~~~g---~~~~ 140 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKI--DVFH-GIGRILGPSIFS-----------PMPGTVSVETETG---ENEM 140 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEeCCCCCc-----------CCceEEEEEeCCC---ceEE
Confidence 12222 222232 23334454 4444 355555432000 1133455655443 1237
Q ss_pred EEeCEEEEeecccCCCCCCCCCCCCCCCCcccc-eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 143 YGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEG-QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 143 ~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g-~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
+.||+||+|||. .|..| | +.. +.+ .++++.+.... ...+++|+|||+|.+|+|+|..|++.+.
T Consensus 141 ~~~d~lViATGs---~p~~~--p---~~~-~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~~G~E~A~~l~~~g~ 204 (472)
T PRK05976 141 IIPENLLIATGS---RPVEL--P---GLP-FDGEYVISSDEALSL-------ETLPKSLVIVGGGVIGLEWASMLADFGV 204 (472)
T ss_pred EEcCEEEEeCCC---CCCCC--C---CCC-CCCceEEcchHhhCc-------cccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 899999999994 55443 2 221 112 24554443321 1246899999999999999999998865
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ ||++.|.+. ++|..+ ..
T Consensus 205 ~-----Vtli~~~~~-il~~~~-----------~~--------------------------------------------- 222 (472)
T PRK05976 205 E-----VTVVEAADR-ILPTED-----------AE--------------------------------------------- 222 (472)
T ss_pred e-----EEEEEecCc-cCCcCC-----------HH---------------------------------------------
Confidence 4 999999874 333321 00
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe---CCcE---EEcCCc--eeeccEEEEecCCCCc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW---KGGL---EFEDNT--KLEADVVILCTGYDGK 372 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~---~~~v---~~~dG~--~~~~D~VI~aTG~~~~ 372 (511)
+...+.+.+++.+|+++.+. +.+++ ++++ .+.+|+ ++++|.||+|||.+++
T Consensus 223 --------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 223 --------------------LSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred --------------------HHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 00011123455567777765 66665 3443 235674 5899999999999998
Q ss_pred ccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 373 KKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
...+. .+...+. ..++.+.+...+ .++.||+|++|.... +.....+..|++.++..+.|.
T Consensus 283 ~~~l~---l~~~~~~-~~~g~i~Vd~~l-~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 283 TEGIG---LENTDID-VEGGFIQIDDFC-QTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGK 343 (472)
T ss_pred CCCCC---chhcCce-ecCCEEEECCCc-ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 65321 1111111 122334343332 355799999998754 334578999999999988775
No 39
>PRK13748 putative mercuric reductase; Provisional
Probab=99.92 E-value=2.9e-23 Score=220.45 Aligned_cols=310 Identities=15% Similarity=0.156 Sum_probs=179.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc-cCCCCCCCCC--CCCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE-FTDFPWPNRD--DPGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 77 (511)
.+||+||||||+|+++|..| .|.+|+|+|++ .+||+|... .+|...+..+..... ....+++... .......+
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 58999999999999999999 89999999996 899998652 233322211111100 0111110000 01112344
Q ss_pred HHHHHHHHHHHhcC-------CCC--ceEe-eeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 78 EILDYLESYAKHFD-------VFK--CVRF-NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 78 ~~~~yl~~~~~~~~-------~~~--~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
.+.++.+...+++. +.. .+.+ ..++..++ ...+.|...++ ....+.||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~------------------~~~~~v~~~~g---~~~~~~~d~ 235 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKD------------------DQTLIVRLNDG---GERVVAFDR 235 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEec------------------CCEEEEEeCCC---ceEEEEcCE
Confidence 55544443332211 000 1111 22333222 23344544332 223689999
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCc
Q 010421 148 LVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQP 227 (511)
Q Consensus 148 vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~ 227 (511)
||+||| +.|..|.+| |.+.. ..+++.+... ....+++|+|||+|.+|+|+|..|++.+.+
T Consensus 236 lviAtG---s~p~~p~i~---g~~~~--~~~~~~~~~~-------~~~~~~~vvViGgG~ig~E~A~~l~~~g~~----- 295 (561)
T PRK13748 236 CLIATG---ASPAVPPIP---GLKET--PYWTSTEALV-------SDTIPERLAVIGSSVVALELAQAFARLGSK----- 295 (561)
T ss_pred EEEcCC---CCCCCCCCC---CCCcc--ceEccHHHhh-------cccCCCeEEEECCCHHHHHHHHHHHHcCCE-----
Confidence 999999 568888888 65432 1233222111 123568999999999999999999988754
Q ss_pred EEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCC
Q 010421 228 CTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPD 307 (511)
Q Consensus 228 Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 307 (511)
|+++.|.. +++..+ . ..
T Consensus 296 Vtli~~~~--~l~~~d-------~----~~-------------------------------------------------- 312 (561)
T PRK13748 296 VTILARST--LFFRED-------P----AI-------------------------------------------------- 312 (561)
T ss_pred EEEEecCc--cccccC-------H----HH--------------------------------------------------
Confidence 99999853 333221 0 00
Q ss_pred CccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--CcEEEc-CCceeeccEEEEecCCCCcccccccCCCcc
Q 010421 308 HPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GGLEFE-DNTKLEADVVILCTGYDGKKKLKAFLPEPF 383 (511)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~v~~~-dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~ 383 (511)
...+.+.+++.+|+++.+. +.+++. +.+.+. ++.++++|.||+|+|++|+..++.. .-
T Consensus 313 ---------------~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l---~~ 374 (561)
T PRK13748 313 ---------------GEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLAL---DA 374 (561)
T ss_pred ---------------HHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCc---hh
Confidence 0011123445567776654 666643 233222 3336999999999999999754211 11
Q ss_pred cccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 384 QSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 384 ~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
.++..++++.+.+..++ .++.||+|++|..... ...+.+..|++.++..+.|.
T Consensus 375 ~g~~~~~~g~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 375 AGVTVNAQGAIVIDQGM-RTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred cCceECCCCCEeECCCc-ccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 11111333444444443 3578999999987643 34567889999999998764
No 40
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=2.7e-23 Score=215.44 Aligned_cols=310 Identities=18% Similarity=0.185 Sum_probs=181.3
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----ccCCCCCCCCCCCCCC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----EFTDFPWPNRDDPGFP 74 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 74 (511)
++.+||+|||||++|+++|..| .|.+|+|+|+ +.+||+|... .+|...+......+ .+..+.+... ....
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~--~~~~ 77 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD--GPKI 77 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC--CCcc
Confidence 1458999999999999999999 8999999999 7899998751 22221111111000 1122222111 2345
Q ss_pred ChHHHHHHHHHHHHhcCCCCce-E--ee-eEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEE
Q 010421 75 SYTEILDYLESYAKHFDVFKCV-R--FN-SKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVV 150 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i-~--~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVl 150 (511)
+..++.++++...+++.. .+ . +. ..|.-+..... . .+.+++.+ ++. ++.||+||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~g~~~----------~---~~~~~v~v-~~~-----~~~~d~lIi 136 (460)
T PRK06292 78 DFKKVMARVRRERDRFVG--GVVEGLEKKPKIDKIKGTAR----------F---VDPNTVEV-NGE-----RIEAKNIVI 136 (460)
T ss_pred CHHHHHHHHHHHHHHHhc--chHHHHHhhCCCEEEEEEEE----------E---ccCCEEEE-CcE-----EEEeCEEEE
Confidence 677888888777765432 11 0 00 01111110000 0 11124544 222 789999999
Q ss_pred eecccCCCCCCCCCCCCCCCCcccc-eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEE
Q 010421 151 CTGKYGDVPIIPAFPNNKGPEVFEG-QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCT 229 (511)
Q Consensus 151 AtG~~~~~p~~p~~~~~~g~~~~~g-~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vt 229 (511)
|||. . .|.+| |.....+ .++++.+...+ ...+++|+|||+|.+|+|+|..|++.+.+ |+
T Consensus 137 ATGs---~--~p~ip---g~~~~~~~~~~~~~~~~~~-------~~~~k~v~VIGgG~~g~E~A~~l~~~g~~-----Vt 196 (460)
T PRK06292 137 ATGS---R--VPPIP---GVWLILGDRLLTSDDAFEL-------DKLPKSLAVIGGGVIGLELGQALSRLGVK-----VT 196 (460)
T ss_pred eCCC---C--CCCCC---CCcccCCCcEECchHHhCc-------cccCCeEEEECCCHHHHHHHHHHHHcCCc-----EE
Confidence 9994 4 34444 3322112 24443333221 23578999999999999999999988764 99
Q ss_pred EEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCc
Q 010421 230 MIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHP 309 (511)
Q Consensus 230 l~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 309 (511)
++.|.+. ++|..+ . . +.
T Consensus 197 li~~~~~-~l~~~d-------~----~----------------------------~~----------------------- 213 (460)
T PRK06292 197 VFERGDR-ILPLED-------P----E----------------------------VS----------------------- 213 (460)
T ss_pred EEecCCC-cCcchh-------H----H----------------------------HH-----------------------
Confidence 9999875 333211 0 0 00
Q ss_pred cccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC---cEEE--cCC--ceeeccEEEEecCCCCcccccccCCC
Q 010421 310 FEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG---GLEF--EDN--TKLEADVVILCTGYDGKKKLKAFLPE 381 (511)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~---~v~~--~dG--~~~~~D~VI~aTG~~~~~~~~~~~~~ 381 (511)
+.+.+.+++. |+++.+. +.+++.+ ++++ .+| +++++|.||+|+|.+|+...+.+
T Consensus 214 --------------~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l--- 275 (460)
T PRK06292 214 --------------KQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGL--- 275 (460)
T ss_pred --------------HHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCc---
Confidence 0011234444 6666554 6666532 3443 344 45899999999999999764211
Q ss_pred cccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 382 PFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 382 ~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
.-.++..++++.+.+...+ .++.||+|++|..... .....|..|++.+|..+.+.
T Consensus 276 ~~~g~~~~~~g~i~vd~~~-~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 276 ENTGIELDERGRPVVDEHT-QTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred HhhCCEecCCCcEeECCCc-ccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 1011111333444444443 3478999999987653 33568999999999998873
No 41
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.92 E-value=2.9e-23 Score=214.58 Aligned_cols=307 Identities=18% Similarity=0.152 Sum_probs=174.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc------cCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE------FTDFPWPNRDDP 71 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 71 (511)
|+ .+||+||||||+|++||..+ .|.+|+|+|+++.+||++... +.|.-.+-.....+. ...+.... .
T Consensus 1 m~-~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~---~ 76 (466)
T PRK06115 1 MA-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV---K 76 (466)
T ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc---c
Confidence 63 58999999999999999999 899999999878899987541 333322211111111 00110000 0
Q ss_pred CCCChHHHHHHHHHH-----------HHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCce
Q 010421 72 GFPSYTEILDYLESY-----------AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSI 140 (511)
Q Consensus 72 ~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (511)
.-....++.++.... .++.++ .+..+ +. ++.. ..+..|...+ ++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~a-~~~~-----------------~~~v~v~~~~---g~~ 132 (466)
T PRK06115 77 PTLNLAQMMKQKDESVEALTKGVEFLFRKNKV--DWIKG-WG-RLDG-----------------VGKVVVKAED---GSE 132 (466)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EE-EEcc-----------------CCEEEEEcCC---Cce
Confidence 011222222222211 222222 22222 11 1111 2223333222 222
Q ss_pred eEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhc
Q 010421 141 QRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESN 220 (511)
Q Consensus 141 ~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~ 220 (511)
.++.||+||||||+ .|. .+| |.+.....++++.+.... ...+++|+|||+|.+|+|+|..+++.+
T Consensus 133 ~~~~~d~lVIATGs---~p~--~ip---g~~~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~ig~E~A~~l~~~G 197 (466)
T PRK06115 133 TQLEAKDIVIATGS---EPT--PLP---GVTIDNQRIIDSTGALSL-------PEVPKHLVVIGAGVIGLELGSVWRRLG 197 (466)
T ss_pred EEEEeCEEEEeCCC---CCC--CCC---CCCCCCCeEECHHHHhCC-------ccCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 36899999999995 443 244 432111234544433321 135799999999999999999999887
Q ss_pred CCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcc
Q 010421 221 QGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLL 300 (511)
Q Consensus 221 ~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
.+ ||++.|.+. ++|..+ ..
T Consensus 198 ~~-----Vtlie~~~~-il~~~d-----------~~-------------------------------------------- 216 (466)
T PRK06115 198 AQ-----VTVVEYLDR-ICPGTD-----------TE-------------------------------------------- 216 (466)
T ss_pred Ce-----EEEEeCCCC-CCCCCC-----------HH--------------------------------------------
Confidence 64 999998764 333221 00
Q ss_pred cCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--CcE--EEc---CC--ceeeccEEEEecCCC
Q 010421 301 KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GGL--EFE---DN--TKLEADVVILCTGYD 370 (511)
Q Consensus 301 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~v--~~~---dG--~~~~~D~VI~aTG~~ 370 (511)
+.+.+.+.+++.+|+++.+. +.++++ +++ .+. +| +++++|.||+|+|++
T Consensus 217 ---------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 217 ---------------------TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred ---------------------HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 00011123445567877764 667754 343 232 23 469999999999999
Q ss_pred CcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 371 GKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
|+...+. .+..++..+..+ +.+..+ ..++.||+|++|..... ...+.|..||+.+|..+.|.
T Consensus 276 pn~~~l~---~~~~g~~~~~~G-~~vd~~-~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 276 PYTQGLG---LETVGLETDKRG-MLANDH-HRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred cccccCC---cccccceeCCCC-EEECCC-eecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9875321 111111112222 223222 24678999999987753 34578999999999998775
No 42
>PRK14727 putative mercuric reductase; Provisional
Probab=99.92 E-value=4e-23 Score=214.33 Aligned_cols=313 Identities=16% Similarity=0.128 Sum_probs=178.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPS 75 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (511)
..+||+|||||++|+++|..| .|.+|+|+|+.+.+||+|... +.|...+..+..... .+.+.++... .. ..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~-~~ 92 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVA-PS-ID 92 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCC-Cc-cC
Confidence 358999999999999999999 899999999988999999762 234332211111111 1111111100 11 12
Q ss_pred hHHHHHHHHHHHHhcC---CCCceEeeeEEEE----EEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEE
Q 010421 76 YTEILDYLESYAKHFD---VFKCVRFNSKVVE----VRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFL 148 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~----v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 148 (511)
...+..+......+.. ....+..+..|.- .... +.+.+.|...++ +..++.||+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~---------------~~~~v~v~~~~g---~~~~~~~d~l 154 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFK---------------DGNTLVVRLHDG---GERVLAADRC 154 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEe---------------cCCEEEEEeCCC---ceEEEEeCEE
Confidence 3333322222221110 0000010101111 1221 134455554333 2336899999
Q ss_pred EEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 010421 149 VVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPC 228 (511)
Q Consensus 149 VlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~V 228 (511)
||||| +.|..|.+| |.+.. ..+++.+... ....+++|+|||+|.+|+|+|..+++.+.+ |
T Consensus 155 ViATG---s~p~~p~i~---G~~~~--~~~~~~~~l~-------~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~-----V 214 (479)
T PRK14727 155 LIATG---STPTIPPIP---GLMDT--PYWTSTEALF-------SDELPASLTVIGSSVVAAEIAQAYARLGSR-----V 214 (479)
T ss_pred EEecC---CCCCCCCCC---CcCcc--ceecchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHHcCCE-----E
Confidence 99999 568888888 65321 2233222111 113468999999999999999999987754 9
Q ss_pred EEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCC
Q 010421 229 TMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDH 308 (511)
Q Consensus 229 tl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 308 (511)
+++.|.. +++..+ ... .
T Consensus 215 tlv~~~~--~l~~~d-------~~~--------------------------------~---------------------- 231 (479)
T PRK14727 215 TILARST--LLFRED-------PLL--------------------------------G---------------------- 231 (479)
T ss_pred EEEEcCC--CCCcch-------HHH--------------------------------H----------------------
Confidence 9998742 333221 000 0
Q ss_pred ccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCcEEEc-CCceeeccEEEEecCCCCcccccccCCCccc
Q 010421 309 PFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGGLEFE-DNTKLEADVVILCTGYDGKKKLKAFLPEPFQ 384 (511)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~v~~~-dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~ 384 (511)
+.+.+.+++.+|+++.+. +.+++ ++++.+. ++.++++|.||+|+|+.++..++. ....
T Consensus 232 ---------------~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~---l~~~ 293 (479)
T PRK14727 232 ---------------ETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLN---LEAV 293 (479)
T ss_pred ---------------HHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCC---chhh
Confidence 011123444556666654 55554 3333322 233689999999999999876421 1111
Q ss_pred ccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 385 SLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 385 ~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
++..++++.+.+...+ .++.||+|++|..... ...+.+..|++.+|..+.|.
T Consensus 294 g~~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 294 GVTTDTSGAIVVNPAM-ETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred CceecCCCCEEECCCe-ecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 1111334445554443 3578999999987653 44578889999999999874
No 43
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.91 E-value=1e-22 Score=211.23 Aligned_cols=311 Identities=18% Similarity=0.198 Sum_probs=181.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcC------CCCcCccccCC-CcCceeccCCCCccc-c----CCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA------SDSIGGIWKSC-SYNSTKLQSHRSDYE-F----TDFPWP 66 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~------~~~~GG~w~~~-~~~~~~~~~~~~~~~-~----~~~~~~ 66 (511)
|...+||+||||||+|++||.++ .|.+|+|+|+ ...+||+|... .+|...+......+. + ..+..+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 66678999999999999999999 8999999998 36789988652 223211111111110 0 111111
Q ss_pred CCCCCCCCChHHHHHHH-----------HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC
Q 010421 67 NRDDPGFPSYTEILDYL-----------ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH 135 (511)
Q Consensus 67 ~~~~~~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (511)
.. ..-...+++.+.. +...+..++ .+. ..++..++.. .+.++|.+...
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~g~~~~~~~~----------------~~~~~v~v~~~ 139 (475)
T PRK06327 81 VD--GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKI--TVL-KGRGSFVGKT----------------DAGYEIKVTGE 139 (475)
T ss_pred CC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEecCC----------------CCCCEEEEecC
Confidence 00 0011222333222 222333343 233 3345444431 33567877543
Q ss_pred CCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccce-EEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHH
Q 010421 136 NSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQ-VLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAK 214 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~-~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~ 214 (511)
+ ++ ++.||+||+|||+ .|..| | +.. +.+. ++++..... ....+++|+|||+|.+|+|+|.
T Consensus 140 ~-~~--~~~~d~lViATGs---~p~~~--p---~~~-~~~~~~~~~~~~~~-------~~~~~~~vvVvGgG~~g~E~A~ 200 (475)
T PRK06327 140 D-ET--VITAKHVIIATGS---EPRHL--P---GVP-FDNKIILDNTGALN-------FTEVPKKLAVIGAGVIGLELGS 200 (475)
T ss_pred C-Ce--EEEeCEEEEeCCC---CCCCC--C---CCC-CCCceEECcHHHhc-------ccccCCeEEEECCCHHHHHHHH
Confidence 2 22 7899999999995 45433 2 211 1222 333222222 1235689999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 010421 215 ECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLL 294 (511)
Q Consensus 215 ~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (511)
.+++.+.+ ||++.|++.. +|..+ . .
T Consensus 201 ~l~~~g~~-----Vtli~~~~~~-l~~~d-------~----~-------------------------------------- 225 (475)
T PRK06327 201 VWRRLGAE-----VTILEALPAF-LAAAD-------E----Q-------------------------------------- 225 (475)
T ss_pred HHHHcCCe-----EEEEeCCCcc-CCcCC-------H----H--------------------------------------
Confidence 99888654 9999998752 22211 0 0
Q ss_pred ccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcC--C--ceeeccEEEE
Q 010421 295 WKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFED--N--TKLEADVVIL 365 (511)
Q Consensus 295 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~d--G--~~~~~D~VI~ 365 (511)
+.+.+.+.+++.+|+++.+. |.+++.+ + +.+.+ | +++++|.||+
T Consensus 226 ---------------------------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~ 278 (475)
T PRK06327 226 ---------------------------VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIV 278 (475)
T ss_pred ---------------------------HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEE
Confidence 00011123445567777764 6677543 3 44444 3 4589999999
Q ss_pred ecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 366 CTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 366 aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
|||++|+...+. ....++..+.++.+.+...+ .++.||+|++|.... +.....|..|++.+|..+.|.
T Consensus 279 a~G~~p~~~~l~---~~~~g~~~~~~G~i~vd~~~-~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 279 SIGRVPNTDGLG---LEAVGLKLDERGFIPVDDHC-RTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred ccCCccCCCCCC---cHhhCceeCCCCeEeECCCC-ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCC
Confidence 999999975321 11111112333444454433 357899999998754 344578999999999999874
No 44
>PLN02546 glutathione reductase
Probab=99.91 E-value=6.7e-24 Score=221.17 Aligned_cols=301 Identities=18% Similarity=0.159 Sum_probs=176.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcC---------CCCcCccccCC-CcCceeccCCCCccc----cCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA---------SDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPN 67 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~---------~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~ 67 (511)
.+||+|||||++|+.+|..+ .|.+|+|+|+ ...+||++-.. +.|.-.+........ ...+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 47999999999999999999 8999999996 25688887651 222211111000000 01111110
Q ss_pred CCCCCCCChHHH-----------HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC
Q 010421 68 RDDPGFPSYTEI-----------LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN 136 (511)
Q Consensus 68 ~~~~~~~~~~~~-----------~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (511)
.. ..-.....+ .+++....++.++ .+.. .++..++. . +|.+ +++
T Consensus 159 ~~-~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~-G~a~~vd~-----------------~---~V~v-~G~ 213 (558)
T PLN02546 159 ET-EPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIE-GRGKIVDP-----------------H---TVDV-DGK 213 (558)
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-eEEEEccC-----------------C---EEEE-CCE
Confidence 00 001122222 2333333344444 3332 23333332 1 3544 222
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHH
Q 010421 137 SNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216 (511)
Q Consensus 137 ~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l 216 (511)
.+.||+|||||| +.|..|++| |.+. ++++.+... ....+++|+|||+|.+|+|+|..|
T Consensus 214 -----~~~~D~LVIATG---s~p~~P~Ip---G~~~----v~~~~~~l~-------~~~~~k~V~VIGgG~iGvE~A~~L 271 (558)
T PLN02546 214 -----LYTARNILIAVG---GRPFIPDIP---GIEH----AIDSDAALD-------LPSKPEKIAIVGGGYIALEFAGIF 271 (558)
T ss_pred -----EEECCEEEEeCC---CCCCCCCCC---Chhh----ccCHHHHHh-------ccccCCeEEEECCCHHHHHHHHHH
Confidence 689999999999 578888888 6542 333333222 123578999999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhcc
Q 010421 217 AESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWK 296 (511)
Q Consensus 217 ~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
+..+.+ |+++.|.+. ++|..+ . . +.
T Consensus 272 ~~~g~~-----Vtlv~~~~~-il~~~d-------~----~----------------------------~~---------- 296 (558)
T PLN02546 272 NGLKSD-----VHVFIRQKK-VLRGFD-------E----E----------------------------VR---------- 296 (558)
T ss_pred HhcCCe-----EEEEEeccc-cccccC-------H----H----------------------------HH----------
Confidence 987654 999998764 223221 0 0 00
Q ss_pred CCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc-EE--EcCCceeeccEEEEecCCC
Q 010421 297 LPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG-LE--FEDNTKLEADVVILCTGYD 370 (511)
Q Consensus 297 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~-v~--~~dG~~~~~D~VI~aTG~~ 370 (511)
..+.+.+++.+|+++.+. +.++++ ++ +. +.+++.+.+|.||+|+|++
T Consensus 297 ---------------------------~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 297 ---------------------------DFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred ---------------------------HHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 001123445567777665 666642 23 33 3445445699999999999
Q ss_pred CcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 371 GKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
++..++. ..-.++..+.++.+.+..++ .++.||+|++|..... ...+.+..|++.+|..+.|.
T Consensus 350 Pnt~~L~---le~~gl~~d~~G~I~VD~~l-~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 350 PNTKNLG---LEEVGVKMDKNGAIEVDEYS-RTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred cCCCcCC---hhhcCCcCCCCCcEeECCCc-eeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9976421 01111111333445444433 3578999999987653 34578999999999998774
No 45
>PRK12831 putative oxidoreductase; Provisional
Probab=99.91 E-value=2.9e-23 Score=213.58 Aligned_cols=168 Identities=23% Similarity=0.331 Sum_probs=114.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+||||||+||++|..| .|++|+|||+.+.+||.+.+ ..| .+.+ +.+++.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~-gip--------------~~~l---------~~~~~~ 194 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY-GIP--------------EFRL---------PKETVV 194 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee-cCC--------------CccC---------CccHHH
Confidence 458999999999999999999 89999999999999998754 221 1111 123456
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+..+.++++++ .+++++.|.. .+++.+.. ..+.||+||+|||+. .|+
T Consensus 195 ~~~~~~~~~~gv--~i~~~~~v~~------------------------~v~~~~~~----~~~~~d~viiAtGa~--~~~ 242 (464)
T PRK12831 195 KKEIENIKKLGV--KIETNVVVGK------------------------TVTIDELL----EEEGFDAVFIGSGAG--LPK 242 (464)
T ss_pred HHHHHHHHHcCC--EEEcCCEECC------------------------cCCHHHHH----hccCCCEEEEeCCCC--CCC
Confidence 666677777888 7888775521 12222211 135699999999963 577
Q ss_pred CCCCCCCCCCCcccceEEeccccCccch-------hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDK-------EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~-------~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
.|++| |.+. . .++.+.++..... ........+|+|+|||+|.+|+|+|..+.+.+.+ ||++.|
T Consensus 243 ~l~ip---G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~-----Vtlv~r 312 (464)
T PRK12831 243 FMGIP---GENL-N-GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE-----VHIVYR 312 (464)
T ss_pred CCCCC---CcCC-c-CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE-----EEEEee
Confidence 78888 5442 1 2444433321000 0001235789999999999999999999998764 999998
Q ss_pred cCc
Q 010421 234 TTH 236 (511)
Q Consensus 234 ~~~ 236 (511)
+..
T Consensus 313 ~~~ 315 (464)
T PRK12831 313 RSE 315 (464)
T ss_pred cCc
Confidence 763
No 46
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.91 E-value=2.3e-23 Score=209.49 Aligned_cols=288 Identities=16% Similarity=0.150 Sum_probs=179.0
Q ss_pred eEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+|+|||||++|+.+|.+| .+.+|+|+|+++.. .|... ++.. .......+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~-------~~~~~---------------~~~~-~~g~~~~~~~~ 57 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT-------PYSGM---------------LPGM-IAGHYSLDEIR 57 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC-------cccch---------------hhHH-HheeCCHHHhc
Confidence 489999999999999998 35789999997653 22110 0000 01112334555
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
..+.++++++++ ++.. .+|++++.. + . +|.+.++. ++.||+||+||| ..|.
T Consensus 58 ~~~~~~~~~~gv--~~~~-~~v~~id~~----------------~-~-~V~~~~g~-----~~~yD~LviAtG---~~~~ 108 (364)
T TIGR03169 58 IDLRRLARQAGA--RFVI-AEATGIDPD----------------R-R-KVLLANRP-----PLSYDVLSLDVG---STTP 108 (364)
T ss_pred ccHHHHHHhcCC--EEEE-EEEEEEecc----------------c-C-EEEECCCC-----cccccEEEEccC---CCCC
Confidence 566677777777 5554 589999873 1 1 57776654 689999999999 5677
Q ss_pred CCCCCCCCCCCcccceEEecccc---Cc----cchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC-CCCCcEEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDY---CK----LDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG-PEGQPCTMIV 232 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~---~~----~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~-~~~~~Vtl~~ 232 (511)
.|.+| |.... ++..... .. .. +.......+++|+|||+|.+|+|+|..|+..... ....+|+++
T Consensus 109 ~~~i~---g~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li- 180 (364)
T TIGR03169 109 LSGVE---GAADL---AVPVKPIENFLARWEALL-ESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI- 180 (364)
T ss_pred CCCCC---ccccc---ccccCCHHHHHHHHHHHH-HHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-
Confidence 88888 53211 1111111 00 00 0000012467999999999999999999864211 001358988
Q ss_pred ecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccc
Q 010421 233 RTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEE 312 (511)
Q Consensus 233 R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 312 (511)
+.+. +++... ..
T Consensus 181 ~~~~-~l~~~~-----------~~-------------------------------------------------------- 192 (364)
T TIGR03169 181 AGAS-LLPGFP-----------AK-------------------------------------------------------- 192 (364)
T ss_pred eCCc-ccccCC-----------HH--------------------------------------------------------
Confidence 4332 222211 00
Q ss_pred ccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCC
Q 010421 313 DYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPS 391 (511)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
+.+.+.+.+++.+|+++.+. +.++++++|++++|+++++|.||+|+|.+++..+.. . ++..+..
T Consensus 193 ---------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-~-----gl~~~~~ 257 (364)
T TIGR03169 193 ---------VRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAE-S-----GLPLDED 257 (364)
T ss_pred ---------HHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHHHH-c-----CCCcCCC
Confidence 00111234556678888875 778888889999999999999999999998743321 1 1111334
Q ss_pred CcccceeeecCCCCCceEEEeecccc------hhhhhHHHHHHHHHHHhcC
Q 010421 392 GLLPLYRGTIHPLIPNMAFVGYIESV------SNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 392 ~~~~ly~~~~~~~~pnl~~iG~~~~~------~~~~~~e~qa~~~a~~l~g 436 (511)
+.+.+...+..++.||+|++|..... .....|..||+.+|+.+..
T Consensus 258 g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 258 GFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 44555554444588999999976532 1234688899988887754
No 47
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.91 E-value=3.1e-23 Score=225.89 Aligned_cols=287 Identities=16% Similarity=0.187 Sum_probs=182.9
Q ss_pred EEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 7 IAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 7 v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
|+|||+|++|+.+|.+| .+++|+|||+++.++ |..+.+ +. +. ....+.+++..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~----~l---------~g~~~~~~l~~ 58 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SS----VL---------QGEADLDDITL 58 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cH----HH---------CCCCCHHHccC
Confidence 68999999999999988 357899999987762 221111 00 00 00112233332
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
...++.++.++ .++++++|+.|+.. .++|.+.++. ++.||+||+||| +.|+.
T Consensus 59 ~~~~~~~~~gv--~~~~g~~V~~Id~~------------------~k~V~~~~g~-----~~~yD~LVlATG---s~p~~ 110 (785)
T TIGR02374 59 NSKDWYEKHGI--TLYTGETVIQIDTD------------------QKQVITDAGR-----TLSYDKLILATG---SYPFI 110 (785)
T ss_pred CCHHHHHHCCC--EEEcCCeEEEEECC------------------CCEEEECCCc-----EeeCCEEEECCC---CCcCC
Confidence 33344556777 78889999999872 1357666554 789999999999 46888
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|++| |.+.. + ++......+.... ......+++|+|||+|.+|+|+|..|++.+.. |+++.+.+.+ +++
T Consensus 111 p~ip---G~~~~-~-v~~~rt~~d~~~i-~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~-----Vtvv~~~~~l-l~~ 178 (785)
T TIGR02374 111 LPIP---GADKK-G-VYVFRTIEDLDAI-MAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMD-----VSVIHHAPGL-MAK 178 (785)
T ss_pred CCCC---CCCCC-C-EEEeCCHHHHHHH-HHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe-----EEEEccCCch-hhh
Confidence 8888 65421 1 2222222111100 01223678999999999999999999988764 9999987753 221
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
.. +. ....
T Consensus 179 ~l------d~--------------------------------~~~~---------------------------------- 186 (785)
T TIGR02374 179 QL------DQ--------------------------------TAGR---------------------------------- 186 (785)
T ss_pred hc------CH--------------------------------HHHH----------------------------------
Confidence 10 00 0000
Q ss_pred cCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccc
Q 010421 322 MPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPL 396 (511)
Q Consensus 322 ~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (511)
.+.+.+++.+|+++.+. +.++.++ +|+++||+++++|.||+|+|++|+..+....+.+. ++.+.+
T Consensus 187 ---~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~-------~ggI~V 256 (785)
T TIGR02374 187 ---LLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKV-------NRGIIV 256 (785)
T ss_pred ---HHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCcc-------CCCEEE
Confidence 01123445567777765 6666543 37889999999999999999999976543221111 123333
Q ss_pred eeeecCCCCCceEEEeecccc-----hhhhhHHHHHHHHHHHhcCCC
Q 010421 397 YRGTIHPLIPNMAFVGYIESV-----SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 397 y~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~~ 438 (511)
...+ .++.||+|++|..... ..+..+..||+.+|..|.|..
T Consensus 257 d~~~-~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 257 NDSM-QTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred CCCc-ccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 3332 3578999999976432 123457789999999998854
No 48
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.91 E-value=1.7e-22 Score=207.99 Aligned_cols=311 Identities=14% Similarity=0.078 Sum_probs=176.6
Q ss_pred CCeEEEECCCHHHHHHHHhccCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCChHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 78 (511)
.+||+|||+|++|..+|..+.|.+|+|+|+ ..+||++... +.|.-.+-.....+. ...+.+... ..-....+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~--~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE--IDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHHCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC--CCccCHHH
Confidence 589999999999999876669999999998 6799987651 233222111111110 011111100 11123455
Q ss_pred HHHHHHH-HHHhcCCC-CceEee---eEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 79 ILDYLES-YAKHFDVF-KCVRFN---SKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 79 ~~~yl~~-~~~~~~~~-~~i~~~---~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+.++... ..+...-. ....+. ..|+-+.. .+.+ .+.++|.+.++. ++.||+||+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g----------~~~~---~~~~~V~~~~g~-----~~~~d~lIiATG 140 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDG----------HARF---VGPRTLRTGDGE-----EITGDQIVIAAG 140 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEE----------EEEE---ecCCEEEECCCc-----EEEeCEEEEEEC
Confidence 5555433 22211000 000000 01111110 0000 223457665443 689999999999
Q ss_pred ccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 154 KYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 154 ~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
+.|..|++. +... -.+..+.+...+ ...+++|+|||+|.+|+|+|..|++.+.+ |+++.+
T Consensus 141 ---s~p~~p~~~---~~~~--~~~~~~~~~~~l-------~~~~k~vvVIGgG~ig~E~A~~l~~~G~~-----Vtli~~ 200 (452)
T TIGR03452 141 ---SRPYIPPAI---ADSG--VRYHTNEDIMRL-------PELPESLVIVGGGYIAAEFAHVFSALGTR-----VTIVNR 200 (452)
T ss_pred ---CCCCCCCCC---CCCC--CEEEcHHHHHhh-------hhcCCcEEEECCCHHHHHHHHHHHhCCCc-----EEEEEc
Confidence 467777543 2111 123333332221 12478999999999999999999988764 999999
Q ss_pred cCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccc
Q 010421 234 TTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEED 313 (511)
Q Consensus 234 ~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 313 (511)
.+. ++|..+ ... ...
T Consensus 201 ~~~-ll~~~d-------~~~--------------------------------~~~------------------------- 215 (452)
T TIGR03452 201 STK-LLRHLD-------EDI--------------------------------SDR------------------------- 215 (452)
T ss_pred cCc-cccccC-------HHH--------------------------------HHH-------------------------
Confidence 775 222211 000 000
Q ss_pred cccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCcccccccCCCccccccc
Q 010421 314 YASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLE 388 (511)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~ 388 (511)
+.+.++. +|+++.+. +.+++. ++ +.+.+|+++++|.||+|||++|+..++.. .-.++..
T Consensus 216 ------------l~~~~~~-gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~---~~~gl~~ 279 (452)
T TIGR03452 216 ------------FTEIAKK-KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDA---EAAGVEV 279 (452)
T ss_pred ------------HHHHHhc-CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCc---hhcCeeE
Confidence 0011222 36666553 666652 33 45568888999999999999999765321 1111212
Q ss_pred CCCCcccceeeecCCCCCceEEEeecccch-hhhhHHHHHHHHHHHhcCC
Q 010421 389 HPSGLLPLYRGTIHPLIPNMAFVGYIESVS-NLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 389 ~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 437 (511)
++++.+.+..++. ++.||+|++|...... ..+.+..|++.+|..+.+.
T Consensus 280 ~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 280 DEDGRIKVDEYGR-TSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred CCCCcEeeCCCcc-cCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 3344455555443 7889999999877543 3468999999999998764
No 49
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.91 E-value=4e-23 Score=213.29 Aligned_cols=280 Identities=22% Similarity=0.275 Sum_probs=173.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||++|+++|..| .|++|+|+|+.+.+||.+.. ..| .+....++.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~-gip------------------------~~~~~~~~~ 193 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY-GIP------------------------EFRLPKDIV 193 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec-cCC------------------------CccCCHHHH
Confidence 357999999999999999999 89999999999999887654 111 111234666
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+....++++++ .+++++.|.. .+++.+. .+.||+||+|||.. .|+
T Consensus 194 ~~~~~~l~~~gv--~~~~~~~v~~------------------------~v~~~~~------~~~~d~vvlAtGa~--~~~ 239 (457)
T PRK11749 194 DREVERLLKLGV--EIRTNTEVGR------------------------DITLDEL------RAGYDAVFIGTGAG--LPR 239 (457)
T ss_pred HHHHHHHHHcCC--EEEeCCEECC------------------------ccCHHHH------HhhCCEEEEccCCC--CCC
Confidence 666677777777 6777765521 1222111 36799999999964 466
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhh--hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEA--ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~--~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
.+.+| |.+. . .++++.++....... ......+++|+|||+|.+|+|+|..+.+.+. ++|+++.|++...
T Consensus 240 ~~~i~---G~~~-~-gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~----~~Vtlv~~~~~~~ 310 (457)
T PRK11749 240 FLGIP---GENL-G-GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGA----ESVTIVYRRGREE 310 (457)
T ss_pred CCCCC---CccC-C-CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCC----CeEEEeeecCccc
Confidence 66777 5432 1 245544432211000 0122368999999999999999999998765 2599999976533
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
+|... +
T Consensus 311 ~~~~~---------------------------------------~----------------------------------- 316 (457)
T PRK11749 311 MPASE---------------------------------------E----------------------------------- 316 (457)
T ss_pred CCCCH---------------------------------------H-----------------------------------
Confidence 32211 0
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCCc-----EEEc-------------------CCceeeccEEEEecCCCCcc
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG-----LEFE-------------------DNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~-----v~~~-------------------dG~~~~~D~VI~aTG~~~~~ 373 (511)
..+.+++.+|+++.+. +.++.+++ |++. +++++++|.||+|+|++++.
T Consensus 317 -------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 317 -------EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred -------HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 0011222334444332 33332221 3321 23459999999999999986
Q ss_pred cccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhc
Q 010421 374 KLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLID 435 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~ 435 (511)
.+.. ...++..+..+.+.+......++.|++|++|..... .....|..|++.+|..+.
T Consensus 390 ~l~~----~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 390 LILS----TTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred hhhc----cccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 5421 001111123344444442345678999999987643 345678888888887653
No 50
>PTZ00058 glutathione reductase; Provisional
Probab=99.91 E-value=1e-22 Score=212.11 Aligned_cols=314 Identities=14% Similarity=0.138 Sum_probs=180.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPS 75 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (511)
..+||+|||||++|+.||..+ .|.+|+|+|++ .+||++... +.|.-.+-....... ...+.+.. ..-..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~---~~~~d 122 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT---QFSFN 122 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc---cCccC
Confidence 357999999999999999999 89999999995 799987541 233322221111111 00111110 00112
Q ss_pred hHHHHHHH-----------HHHHHhcCCCCceEeee-EEEE-----E---EEcCCCCcccCCCCCCCCCCCceEEEEE--
Q 010421 76 YTEILDYL-----------ESYAKHFDVFKCVRFNS-KVVE-----V---RFTGSLETTDSGGNLLPAGHPVWEVAVQ-- 133 (511)
Q Consensus 76 ~~~~~~yl-----------~~~~~~~~~~~~i~~~~-~V~~-----v---~~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 133 (511)
...+.+.. +...++.++ .+..+. ++.+ | ..... ++.. ..++..+|...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~G~a~f~~~~~v~v~~~~~~~~-------~~~~-~~~~~~~v~~~~~ 192 (561)
T PTZ00058 123 LPLLVERRDKYIRRLNDIYRQNLKKDNV--EYFEGKGSLLSENQVLIKKVSQVDG-------EADE-SDDDEVTIVSAGV 192 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCc--EEEEEEEEEecCCEEEeeccccccc-------cccc-cccccceeeeccc
Confidence 22222222 222333444 333332 1111 0 00000 0000 00122222110
Q ss_pred -eCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHH
Q 010421 134 -THNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDL 212 (511)
Q Consensus 134 -~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~ 212 (511)
..++++ ++.||+|||||| +.|..|.+| |.+ .++++.++..+ ..+++|+|||+|.+|+|+
T Consensus 193 ~~~~~g~--~i~ad~lVIATG---S~P~~P~Ip---G~~----~v~ts~~~~~l--------~~pk~VvIIGgG~iGlE~ 252 (561)
T PTZ00058 193 SQLDDGQ--VIEGKNILIAVG---NKPIFPDVK---GKE----FTISSDDFFKI--------KEAKRIGIAGSGYIAVEL 252 (561)
T ss_pred eecCCCc--EEECCEEEEecC---CCCCCCCCC---Cce----eEEEHHHHhhc--------cCCCEEEEECCcHHHHHH
Confidence 011122 699999999999 578888888 654 24555544332 237999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHH
Q 010421 213 AKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESY 292 (511)
Q Consensus 213 a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (511)
|..++..+.+ ||++.|.+. ++|..+ . .
T Consensus 253 A~~l~~~G~~-----Vtli~~~~~-il~~~d-------~----~------------------------------------ 279 (561)
T PTZ00058 253 INVVNRLGAE-----SYIFARGNR-LLRKFD-------E----T------------------------------------ 279 (561)
T ss_pred HHHHHHcCCc-----EEEEEeccc-ccccCC-------H----H------------------------------------
Confidence 9999988765 999999874 334322 0 0
Q ss_pred HhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC---cE--EEcCC-ceeeccEEEE
Q 010421 293 LLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG---GL--EFEDN-TKLEADVVIL 365 (511)
Q Consensus 293 ~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~---~v--~~~dG-~~~~~D~VI~ 365 (511)
+.+.+.+.+++.+|+++.+. +.+++++ ++ .+.++ +++++|.||+
T Consensus 280 -----------------------------i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~Vlv 330 (561)
T PTZ00058 280 -----------------------------IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIY 330 (561)
T ss_pred -----------------------------HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEE
Confidence 00111133455567777665 6666542 23 34454 4699999999
Q ss_pred ecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-----------------------------
Q 010421 366 CTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES----------------------------- 416 (511)
Q Consensus 366 aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~----------------------------- 416 (511)
|||++|+..++. ...... ...++.+.+..++ .++.||+|++|....
T Consensus 331 A~Gr~Pn~~~L~---l~~~~~-~~~~G~I~VDe~l-qTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 405 (561)
T PTZ00058 331 CVGRSPNTEDLN---LKALNI-KTPKGYIKVDDNQ-RTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTS 405 (561)
T ss_pred CcCCCCCccccC---ccccce-ecCCCeEEECcCC-ccCCCCEEEeEeccCccccccccccccccccccccccccccccc
Confidence 999999976432 111111 1233445454443 468899999997755
Q ss_pred ------chhhhhHHHHHHHHHHHhcCC
Q 010421 417 ------VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 417 ------~~~~~~~e~qa~~~a~~l~g~ 437 (511)
....+.|..|++.+|..+.|.
T Consensus 406 ~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 406 GESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred cccccCcCchHHHHHHHHHHHHHHhCC
Confidence 223468999999999998774
No 51
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.91 E-value=5.2e-22 Score=205.24 Aligned_cols=311 Identities=14% Similarity=0.109 Sum_probs=181.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----ccCCCCCCCC-CCCCCCCh
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----EFTDFPWPNR-DDPGFPSY 76 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~ 76 (511)
++|+|||||++|+.+|..+ .|.+|+|+|++ .+||++... ..|.-.+-...... ....+.+... ........
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 5899999999999999999 79999999995 589987651 22221110000000 0001111100 00011122
Q ss_pred HHHHHHH-----------HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 77 TEILDYL-----------ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 77 ~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
..+.++. ...++++++ .+..+ ++..++...+ .....|...++ ...++.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~~~~~~~--------------~~~v~V~~~~g---~~~~~~~ 140 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGV--RVIAG-RGRLIDPGLG--------------PHRVKVTTADG---GEETLDA 140 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEeecccC--------------CCEEEEEeCCC---ceEEEec
Confidence 3333333 333344455 44433 4444331001 22333433222 2236899
Q ss_pred CEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCC
Q 010421 146 EFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEG 225 (511)
Q Consensus 146 d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 225 (511)
|+||+|||+ .|..|+.+ +.+ ...++++.+.... ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 141 d~lViATGs---~p~~~p~~---~~~--~~~v~~~~~~~~~-------~~~~~~vvVIGgG~ig~E~A~~l~~~g~~--- 202 (466)
T PRK07845 141 DVVLIATGA---SPRILPTA---EPD--GERILTWRQLYDL-------DELPEHLIVVGSGVTGAEFASAYTELGVK--- 202 (466)
T ss_pred CEEEEcCCC---CCCCCCCC---CCC--CceEEeehhhhcc-------cccCCeEEEECCCHHHHHHHHHHHHcCCe---
Confidence 999999994 56655443 221 1135554444332 12468999999999999999999988754
Q ss_pred CcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCC
Q 010421 226 QPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLK 305 (511)
Q Consensus 226 ~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (511)
||++.+.+. ++|... .. .
T Consensus 203 --Vtli~~~~~-~l~~~d-----------~~----------------------------~-------------------- 220 (466)
T PRK07845 203 --VTLVSSRDR-VLPGED-----------AD----------------------------A-------------------- 220 (466)
T ss_pred --EEEEEcCCc-CCCCCC-----------HH----------------------------H--------------------
Confidence 999998765 333321 00 0
Q ss_pred CCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCc--EEEcCCceeeccEEEEecCCCCcccccccCC
Q 010421 306 PDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLP 380 (511)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~ 380 (511)
.+.+.+.+++.+|+++.+. +.+++ +++ |.+.+|+++++|.||+|+|++|+...+.+
T Consensus 221 -----------------~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l-- 281 (466)
T PRK07845 221 -----------------AEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGL-- 281 (466)
T ss_pred -----------------HHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCc--
Confidence 0011123455567777664 66664 333 45678889999999999999999764211
Q ss_pred CcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 381 EPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
.-.++..++.+.+.+...+ .++.||+|++|..... .....|..|++.++..+.|.
T Consensus 282 -~~~gl~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 282 -EEAGVELTPSGHITVDRVS-RTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred -hhhCceECCCCcEeECCCc-ccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 1011112334445555443 3578999999987754 34578999999999988764
No 52
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.90 E-value=6.9e-23 Score=211.87 Aligned_cols=305 Identities=19% Similarity=0.206 Sum_probs=177.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC--------CcCccccC-CCcCceeccCCCCccc----cCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD--------SIGGIWKS-CSYNSTKLQSHRSDYE----FTDFPWPNR 68 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~--------~~GG~w~~-~~~~~~~~~~~~~~~~----~~~~~~~~~ 68 (511)
.+||+|||||++|+.+|..+ .|.+|+|+|+.. .+||+|.. .++|.-.+......+. ...+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 47999999999999999999 899999999731 58998765 2444432211111111 011111100
Q ss_pred CCCCCCChHHHHHHHHHHHHhc-----------CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC
Q 010421 69 DDPGFPSYTEILDYLESYAKHF-----------DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS 137 (511)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~-----------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (511)
...-.....+.++.....+++ ++ .+. ..+..-++ .. +|.+.+.+
T Consensus 82 -~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v--~~i-~G~a~f~~------------------~~--~v~v~~~~- 136 (484)
T TIGR01438 82 -ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKV--NYE-NAYAEFVD------------------KH--RIKATNKK- 136 (484)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCc--EEE-EEEEEEcC------------------CC--EEEEeccC-
Confidence 001123344444443333322 22 111 11111111 12 35554322
Q ss_pred CceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHH
Q 010421 138 NSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECA 217 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~ 217 (511)
+....+.||+||+||| +.|..|++| |.+.. .+++.+...+ ....++|+|||+|.+|+|+|..++
T Consensus 137 g~~~~~~~d~lVIATG---s~p~~p~ip---G~~~~---~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~ 200 (484)
T TIGR01438 137 GKEKIYSAERFLIATG---ERPRYPGIP---GAKEL---CITSDDLFSL-------PYCPGKTLVVGASYVALECAGFLA 200 (484)
T ss_pred CCceEEEeCEEEEecC---CCCCCCCCC---Cccce---eecHHHhhcc-------cccCCCEEEECCCHHHHHHHHHHH
Confidence 2223689999999999 568888888 65321 2333333321 124578999999999999999999
Q ss_pred HhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccC
Q 010421 218 ESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKL 297 (511)
Q Consensus 218 ~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (511)
+.+.+ ||++.|. . ++|..+ ..
T Consensus 201 ~~G~~-----Vtli~~~-~-~l~~~d-------~~--------------------------------------------- 221 (484)
T TIGR01438 201 GIGLD-----VTVMVRS-I-LLRGFD-------QD--------------------------------------------- 221 (484)
T ss_pred HhCCc-----EEEEEec-c-cccccC-------HH---------------------------------------------
Confidence 98765 9999874 2 334332 00
Q ss_pred CcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCc---eeeccEEEEecCC
Q 010421 298 PLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNT---KLEADVVILCTGY 369 (511)
Q Consensus 298 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~---~~~~D~VI~aTG~ 369 (511)
+.+.+.+.+++.+|+++.+. +.+++. ++ |++++|+ ++++|.||+|+|+
T Consensus 222 ------------------------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 222 ------------------------CANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred ------------------------HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 00011123455567777664 445542 22 5566663 6999999999999
Q ss_pred CCcccccccCCCcccccccCC-CCcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHhcC
Q 010421 370 DGKKKLKAFLPEPFQSLLEHP-SGLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l~g 436 (511)
+|+..++.. .-.++..+. ++.+.+... ..++.|++|++|.... ....+.|..|++.+++.+.+
T Consensus 278 ~pn~~~l~l---~~~gv~~~~~~G~I~Vd~~-~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 278 DACTRKLNL---ENVGVKINKKTGKIPADEE-EQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CcCCCcCCc---ccccceecCcCCeEecCCC-cccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 999764221 111111111 233434333 3467899999998753 33457899999999999875
No 53
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.90 E-value=8.8e-23 Score=209.65 Aligned_cols=165 Identities=27% Similarity=0.340 Sum_probs=111.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.+ .+|. +....++.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~-gip~------------------------~~~~~~~~ 186 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY-GIPE------------------------FRLPKEIV 186 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee-cCCC------------------------ccCCHHHH
Confidence 357999999999999999999 89999999999999987654 1111 11123455
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.......+++++ .+++++.|. . .|++.+. ...||+||+|||+. .|+
T Consensus 187 ~~~~~~l~~~gv--~~~~~~~v~---~---------------------~v~~~~~------~~~yd~viiAtGa~--~p~ 232 (449)
T TIGR01316 187 VTEIKTLKKLGV--TFRMNFLVG---K---------------------TATLEEL------FSQYDAVFIGTGAG--LPK 232 (449)
T ss_pred HHHHHHHHhCCc--EEEeCCccC---C---------------------cCCHHHH------HhhCCEEEEeCCCC--CCC
Confidence 555555566776 666665431 1 1333222 24699999999963 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchh--------hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKE--------AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~--------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
.|.+| |.+. .| ++++.++...... .......+|+|+|||+|.+|+|+|..+.+.+.+ ||++.
T Consensus 233 ~~~ip---G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~-----Vtlv~ 302 (449)
T TIGR01316 233 LMNIP---GEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE-----VHCLY 302 (449)
T ss_pred cCCCC---CCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE-----EEEEe
Confidence 88888 5442 22 4444433210000 001134689999999999999999999998764 99999
Q ss_pred ecCc
Q 010421 233 RTTH 236 (511)
Q Consensus 233 R~~~ 236 (511)
|++.
T Consensus 303 ~~~~ 306 (449)
T TIGR01316 303 RRTR 306 (449)
T ss_pred ecCc
Confidence 9764
No 54
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.90 E-value=4.2e-22 Score=206.68 Aligned_cols=304 Identities=15% Similarity=0.126 Sum_probs=176.7
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCChH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 77 (511)
+||+|||||++|+++|.+| .|.+|+|+|+ +.+||+|... .+|...+......+. ...+.+... ....+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE--NVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC--CCcCCHH
Confidence 7999999999999999999 8999999999 8899988642 344322221111111 111111100 1112333
Q ss_pred HHHHHHHHHH-----------HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeC
Q 010421 78 EILDYLESYA-----------KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFE 146 (511)
Q Consensus 78 ~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 146 (511)
.+.++.+... ++.++ .+..+ ++..++ ...+.+...++ . .++.||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~~------------------~~~~~v~~~~g--~--~~~~~d 133 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKV--TVIKG-EAKFLD------------------PGTVLVTGENG--E--ETLTAK 133 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc------------------CCEEEEecCCC--c--EEEEeC
Confidence 4433333322 22333 22222 222221 22233332221 1 268999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcccc-eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCC
Q 010421 147 FLVVCTGKYGDVPIIPAFPNNKGPEVFEG-QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEG 225 (511)
Q Consensus 147 ~vVlAtG~~~~~p~~p~~~~~~g~~~~~g-~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 225 (511)
+||+||| ..|+.|++| . + +.+ .+.++.+.... ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 134 ~lVlAtG---~~p~~~~~~-~-~---~~~~~~~~~~~~~~~-------~~~~~~vvViGgG~~g~e~A~~l~~~g~~--- 195 (461)
T TIGR01350 134 NIIIATG---SRPRSLPGP-F-D---FDGEVVITSTGALNL-------KEVPESLVIIGGGVIGIEFASIFASLGSK--- 195 (461)
T ss_pred EEEEcCC---CCCCCCCCC-C-C---CCCceEEcchHHhcc-------ccCCCeEEEECCCHHHHHHHHHHHHcCCc---
Confidence 9999999 456666553 0 1 112 23333322221 13468999999999999999999988754
Q ss_pred CcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCC
Q 010421 226 QPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLK 305 (511)
Q Consensus 226 ~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (511)
|+++.|.+. ++|... ...
T Consensus 196 --Vtli~~~~~-~l~~~~-----------~~~------------------------------------------------ 213 (461)
T TIGR01350 196 --VTVIEMLDR-ILPGED-----------AEV------------------------------------------------ 213 (461)
T ss_pred --EEEEEcCCC-CCCCCC-----------HHH------------------------------------------------
Confidence 999999875 233211 000
Q ss_pred CCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCcE--EEcCC--ceeeccEEEEecCCCCccccccc
Q 010421 306 PDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGGL--EFEDN--TKLEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~v--~~~dG--~~~~~D~VI~aTG~~~~~~~~~~ 378 (511)
...+.+.+++.+|+++.+. +.+++ ++++ .+.+| +++++|.||+|||.+++...+.
T Consensus 214 -----------------~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~- 275 (461)
T TIGR01350 214 -----------------SKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLG- 275 (461)
T ss_pred -----------------HHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCC-
Confidence 0011123445567777764 66664 3344 34567 4699999999999999865210
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+ .-.++..+..+.+.+...+ .++.||+|++|.... ......|..|++.+|..+.++
T Consensus 276 ~--~~~gl~~~~~g~i~vd~~l-~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 276 L--ENLGVELDERGRIVVDEYM-RTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred c--HhhCceECCCCcEeeCCCc-ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 0 0011111233334444332 356799999998764 334578999999999999764
No 55
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.90 E-value=8.5e-22 Score=203.52 Aligned_cols=304 Identities=12% Similarity=0.099 Sum_probs=174.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCChHH
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 78 (511)
+|+||||||+|+++|..+ .|.+|+|+|++ .+||++... +.|...+......+. ...+..+............
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 799999999999999999 89999999995 688887541 222211100000000 0111111100011223445
Q ss_pred HHHHHHHHHHh-----------cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 79 ILDYLESYAKH-----------FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 79 ~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
+..+.....++ .++ .+ +..++..++ .. ++.+...+ + ..++.||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~a~~~~------------------~~--~v~v~~~~-~-~~~~~~d~ 135 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKI--KV-IQGKASFET------------------DH--RVRVEYGD-K-EEVVDAEQ 135 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCc--EE-EEEEEEEcc------------------CC--EEEEeeCC-C-cEEEECCE
Confidence 54444333332 122 11 122332222 22 23333321 1 12689999
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCc
Q 010421 148 LVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQP 227 (511)
Q Consensus 148 vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~ 227 (511)
||||||+ .|..|+++ +.+. ..++++.+...+ ...+++|+|||+|.+|+|+|..+.+.+.+
T Consensus 136 lviATGs---~p~~~p~~---~~~~--~~v~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~~g~~----- 195 (458)
T PRK06912 136 FIIAAGS---EPTELPFA---PFDG--KWIINSKHAMSL-------PSIPSSLLIVGGGVIGCEFASIYSRLGTK----- 195 (458)
T ss_pred EEEeCCC---CCCCCCCC---CCCC--CeEEcchHHhCc-------cccCCcEEEECCCHHHHHHHHHHHHcCCe-----
Confidence 9999994 56666565 4321 124554433321 12468999999999999999999887654
Q ss_pred EEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCC
Q 010421 228 CTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPD 307 (511)
Q Consensus 228 Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 307 (511)
|+++.|.+. ++|... ..+
T Consensus 196 Vtli~~~~~-ll~~~d-----------~e~-------------------------------------------------- 213 (458)
T PRK06912 196 VTIVEMAPQ-LLPGED-----------EDI-------------------------------------------------- 213 (458)
T ss_pred EEEEecCCC-cCcccc-----------HHH--------------------------------------------------
Confidence 999998765 233211 000
Q ss_pred CccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc--EEEc-CCc--eeeccEEEEecCCCCcccccccCCC
Q 010421 308 HPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG--LEFE-DNT--KLEADVVILCTGYDGKKKLKAFLPE 381 (511)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~--v~~~-dG~--~~~~D~VI~aTG~~~~~~~~~~~~~ 381 (511)
.+.+.+.+++.+|+++.+. +.+++.++ +.+. +|+ ++++|.||+|||.+|+...+. .
T Consensus 214 ---------------~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~---l 275 (458)
T PRK06912 214 ---------------AHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLN---L 275 (458)
T ss_pred ---------------HHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCC---c
Confidence 0011123445567777765 66775433 4443 443 589999999999999865321 1
Q ss_pred cccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 382 PFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 382 ~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+..++..... .+.+..++ .++.||+|++|.... ....+.|..|++.+|..+.|.
T Consensus 276 ~~~gv~~~~~-gi~Vd~~~-~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 276 EKAGVQFSNK-GISVNEHM-QTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred hhcCceecCC-CEEeCCCe-ecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 1111111222 24444433 256899999998765 334568999999999999874
No 56
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.90 E-value=4.2e-22 Score=216.27 Aligned_cols=296 Identities=21% Similarity=0.197 Sum_probs=169.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||||||+||..| .|++|+|||+++.+||.... .+|..+ .+ .+..+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~-~IP~~r-----------------------lp-~e~l~ 591 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN-IIPEFR-----------------------IS-AESIQ 591 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee-cccccC-----------------------CC-HHHHH
Confidence 47999999999999999999 89999999999999987654 222111 11 23344
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+..+.+..+++ .+++++. . + +++.+.. ...||+||+|||+. .+..
T Consensus 592 ~~ie~l~~~GV--e~~~g~~-----~-----------------d----~~ve~l~-----~~gYDaVIIATGA~--~~~~ 636 (1012)
T TIGR03315 592 KDIELVKFHGV--EFKYGCS-----P-----------------D----LTVAELK-----NQGYKYVILAIGAW--KHGP 636 (1012)
T ss_pred HHHHHHHhcCc--EEEEecc-----c-----------------c----eEhhhhh-----cccccEEEECCCCC--CCCC
Confidence 44445555676 5665531 1 0 1222211 45699999999975 3455
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHh-cCCCCCCcEEEEEecCceeec
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAES-NQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~-~~~~~~~~Vtl~~R~~~~~~p 240 (511)
+.++ |... .++.+.++.............+|+|+|||+|.+|+|+|..+.+. +. ++|+++.|+..-.+|
T Consensus 637 l~I~---G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga----~kVtLVyRr~~~~Mp 706 (1012)
T TIGR03315 637 LRLE---GGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGV----EKVTVVYRRTKRYMP 706 (1012)
T ss_pred CCcC---CCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCC----ceEEEEEccCccccc
Confidence 5566 4321 23333333210000001234689999999999999999988876 42 369999997642333
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ..+ ... +. .++ ...
T Consensus 707 a~~-----------eEl----------------------------~~a----le-------eGV-------------e~~ 723 (1012)
T TIGR03315 707 ASR-----------EEL----------------------------EEA----LE-------DGV-------------DFK 723 (1012)
T ss_pred cCH-----------HHH----------------------------HHH----HH-------cCC-------------EEE
Confidence 221 000 000 00 000 000
Q ss_pred ccCCchhhhhccCeEEEEeCceeEEeCCc--EEEcCCc--eeeccEEEEecCCCCcccccccCCCcccccccCCCCcccc
Q 010421 321 IMPEGFFSEAEKGKIVFKRASKWWFWKGG--LEFEDNT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPL 396 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~i~~~~~~~--v~~~dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (511)
. ..-...+..+++++..-.+...+.++ ....+|+ ++++|.||+|+|++++..+.+.++ +..+..+.+.+
T Consensus 724 ~--~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~G-----L~ld~~G~I~V 796 (1012)
T TIGR03315 724 E--LLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNG-----IPLDEYGWPVV 796 (1012)
T ss_pred e--CCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcC-----cccCCCCCEEe
Confidence 0 00000112334433221111111222 2233454 589999999999999876543221 11123333444
Q ss_pred eeeecCCCCCceEEEeecc-cchhhhhHHHHHHHHHHHhcCCCC
Q 010421 397 YRGTIHPLIPNMAFVGYIE-SVSNLHTAELRSIWLSRLIDDKFK 439 (511)
Q Consensus 397 y~~~~~~~~pnl~~iG~~~-~~~~~~~~e~qa~~~a~~l~g~~~ 439 (511)
......++.|++|++|... .+.....|..|++.+|..+.++..
T Consensus 797 D~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 797 NQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 4333456789999999875 455667899999999999876543
No 57
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.89 E-value=3.8e-22 Score=218.98 Aligned_cols=166 Identities=24% Similarity=0.298 Sum_probs=117.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||||||+||..| .|++|+|||+.+.+||...+ ..| .|....++.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y-GIP------------------------~~rlp~~vi 359 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY-GIP------------------------EFRLPNQLI 359 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc-cCC------------------------CCcChHHHH
Confidence 358999999999999999999 99999999999999998765 222 222334566
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+...+.++.+|+ .+++|+.|-. .+++.+.. ...||+||+|||+. .|+
T Consensus 360 ~~~i~~l~~~Gv--~f~~n~~vG~------------------------dit~~~l~-----~~~yDAV~LAtGA~--~pr 406 (944)
T PRK12779 360 DDVVEKIKLLGG--RFVKNFVVGK------------------------TATLEDLK-----AAGFWKIFVGTGAG--LPT 406 (944)
T ss_pred HHHHHHHHhhcC--eEEEeEEecc------------------------EEeHHHhc-----cccCCEEEEeCCCC--CCC
Confidence 666667777887 7777765421 24444432 35699999999974 688
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhh---------hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEA---------ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMI 231 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~---------~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~ 231 (511)
.+++| |.+. .| ++.+.+|....... ......||+|+|||||.+|+|+|..+.+.+.+ |+++
T Consensus 407 ~l~Ip---G~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~-----Vtlv 476 (944)
T PRK12779 407 FMNVP---GEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN-----VTIV 476 (944)
T ss_pred cCCCC---CCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE-----EEEE
Confidence 88888 5432 22 44444432110000 00123689999999999999999999988764 9999
Q ss_pred EecCc
Q 010421 232 VRTTH 236 (511)
Q Consensus 232 ~R~~~ 236 (511)
.|++.
T Consensus 477 ~rr~~ 481 (944)
T PRK12779 477 YRRTK 481 (944)
T ss_pred EecCc
Confidence 99753
No 58
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=7e-21 Score=181.41 Aligned_cols=200 Identities=24% Similarity=0.325 Sum_probs=141.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCcCccccCC-CcCceeccC-----------CCCccccCCCC-
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSIGGIWKSC-SYNSTKLQS-----------HRSDYEFTDFP- 64 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~-----------~~~~~~~~~~~- 64 (511)
|+...|++.||.||+-|+.|..| .+.+...+||.+.+ .|+.. ..|+..+++ |...|+|-.+-
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 55678999999999999999999 46889999999888 78764 345555544 33444443211
Q ss_pred -------CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC
Q 010421 65 -------WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS 137 (511)
Q Consensus 65 -------~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (511)
+-.. ...++.+.|+.+|+++.+.++. .++|+++|++|...+ .+....+.+....
T Consensus 80 ~h~RLy~Fl~~-e~f~i~R~Ey~dY~~Waa~~l~---~~rfg~~V~~i~~~~--------------~d~~~~~~~~t~~- 140 (436)
T COG3486 80 EHGRLYEFLNY-ETFHIPRREYNDYCQWAASQLP---SLRFGEEVTDISSLD--------------GDAVVRLFVVTAN- 140 (436)
T ss_pred HcchHhhhhhh-hcccccHHHHHHHHHHHHhhCC---ccccCCeeccccccC--------------CcceeEEEEEcCC-
Confidence 1111 4678899999999999999984 699999999874321 1333332222221
Q ss_pred CceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccc-ceEEeccccCccchhhhhhccCCCc-EEEECCCCCHHHHHHH
Q 010421 138 NSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFE-GQVLHSIDYCKLDKEAASQLLKDKK-VAVVGFKKSAIDLAKE 215 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~-g~~~hs~~~~~~~~~~~~~~~~~k~-V~VvG~G~sg~d~a~~ 215 (511)
+. .+.|+.||+++| ..|.+|..- ..+. ++++|+++|.... .....|+ |+|||+|-||+|+...
T Consensus 141 ~~--~y~ar~lVlg~G---~~P~IP~~f-----~~l~~~~vfHss~~~~~~-----~~~~~~~~V~ViG~GQSAAEi~~~ 205 (436)
T COG3486 141 GT--VYRARNLVLGVG---TQPYIPPCF-----RSLIGERVFHSSEYLERH-----PELLQKRSVTVIGSGQSAAEIFLD 205 (436)
T ss_pred Cc--EEEeeeEEEccC---CCcCCChHH-----hCcCccceeehHHHHHhh-----HHhhcCceEEEEcCCccHHHHHHH
Confidence 22 789999999999 689998521 2222 4799999997532 2234454 9999999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCce
Q 010421 216 CAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 216 l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
|...... ...++.|+.|+..+
T Consensus 206 Ll~~~~~-~~~~l~witR~~gf 226 (436)
T COG3486 206 LLNSQPP-QDYQLNWITRSSGF 226 (436)
T ss_pred HHhCCCC-cCccceeeeccCCC
Confidence 9865322 22358899998864
No 59
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.89 E-value=2.9e-22 Score=211.33 Aligned_cols=317 Identities=17% Similarity=0.189 Sum_probs=179.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-CCcCccccCC-CcCceeccCCCCc------------cccC--CCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-DSIGGIWKSC-SYNSTKLQSHRSD------------YEFT--DFPW 65 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~~~GG~w~~~-~~~~~~~~~~~~~------------~~~~--~~~~ 65 (511)
.+||+|||+|++|+.+|..+ .|.+|+|+|+. ..+||++... +.|.-.+...... +... .||.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 57999999999999999999 89999999974 4699986541 3332221111111 1111 0010
Q ss_pred ------C--CCC-CCCCCChHHHHHHHHHHHHhcCC------CC-ceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 66 ------P--NRD-DPGFPSYTEILDYLESYAKHFDV------FK-CVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 66 ------~--~~~-~~~~~~~~~~~~yl~~~~~~~~~------~~-~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
+ .+. ...-.....+.++.+...+++.- .. .+...++.+.+... .+.+ .+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G---------~a~f---~~~~~ 263 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYE---------RGHI---VDKNT 263 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEe---------EEEE---ecCCe
Confidence 0 000 01123556666776666554311 00 01112222333321 0000 11123
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCH
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSA 209 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg 209 (511)
|.+... ++ ++.||+|||||| +.|..|+++ +.+. ..++++.+...+. ..+++|+|||+|.+|
T Consensus 264 v~v~~~--g~--~i~ad~lIIATG---S~P~~P~~~---~~~~--~~V~ts~d~~~l~-------~lpk~VvIVGgG~iG 324 (659)
T PTZ00153 264 IKSEKS--GK--EFKVKNIIIATG---STPNIPDNI---EVDQ--KSVFTSDTAVKLE-------GLQNYMGIVGMGIIG 324 (659)
T ss_pred EEEccC--CE--EEECCEEEEcCC---CCCCCCCCC---CCCC--CcEEehHHhhhhh-------hcCCceEEECCCHHH
Confidence 444321 22 689999999999 567777655 3221 1355554433221 247899999999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHH
Q 010421 210 IDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFI 289 (511)
Q Consensus 210 ~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (511)
+|+|..++..+.+ ||++.+.+. ++|..+ .... ..
T Consensus 325 vE~A~~l~~~G~e-----VTLIe~~~~-ll~~~d-----------~eis----------------------------~~- 358 (659)
T PTZ00153 325 LEFMDIYTALGSE-----VVSFEYSPQ-LLPLLD-----------ADVA----------------------------KY- 358 (659)
T ss_pred HHHHHHHHhCCCe-----EEEEeccCc-ccccCC-----------HHHH----------------------------HH-
Confidence 9999999888754 999999876 333221 0000 00
Q ss_pred HHHHhccCCcccCCCCCCCccccccccccccccCCchhhh-hccCeEEEEeCc-eeEEeCCc----EE--EcC-------
Q 010421 290 ESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSE-AEKGKIVFKRAS-KWWFWKGG----LE--FED------- 354 (511)
Q Consensus 290 ~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~-l~~g~v~v~~~~-i~~~~~~~----v~--~~d------- 354 (511)
+.+. +++.+|+++.+. +.+++++. |. +.+
T Consensus 359 ------------------------------------l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~ 402 (659)
T PTZ00153 359 ------------------------------------FERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESD 402 (659)
T ss_pred ------------------------------------HHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccc
Confidence 0011 233456776664 56665321 33 221
Q ss_pred C--------ceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCC-----CCCceEEEeecccc-hhh
Q 010421 355 N--------TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHP-----LIPNMAFVGYIESV-SNL 420 (511)
Q Consensus 355 G--------~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~pnl~~iG~~~~~-~~~ 420 (511)
+ +++++|.||+|||.+|+...+. .+-.++..+ ++.+.+..++... ..||+|++|..... ...
T Consensus 403 ~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~---l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La 478 (659)
T PTZ00153 403 GPKKNMNDIKETYVDSCLVATGRKPNTNNLG---LDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLA 478 (659)
T ss_pred ccccccccceEEEcCEEEEEECcccCCccCC---chhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCH
Confidence 1 3699999999999999976421 111111112 2334444433322 26999999987653 345
Q ss_pred hhHHHHHHHHHHHhcCC
Q 010421 421 HTAELRSIWLSRLIDDK 437 (511)
Q Consensus 421 ~~~e~qa~~~a~~l~g~ 437 (511)
+.|..||+.++..|.|+
T Consensus 479 ~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 479 HTASHQALKVVDWIEGK 495 (659)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 78999999999999875
No 60
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.88 E-value=9.5e-22 Score=214.45 Aligned_cols=167 Identities=27% Similarity=0.361 Sum_probs=112.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||||||+||..| .|++|+|||+.+.+||.+.+ ..|. +.+ ..++.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~-gip~--------------~rl----------p~~~~ 484 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY-GIPE--------------FRL----------PKKIV 484 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee-cCCC--------------CCC----------CHHHH
Confidence 357999999999999999999 89999999999889988765 2211 111 12344
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+...+.++++++ .+++++.|. . .|++.+.. ...||+||||||+. .|+
T Consensus 485 ~~~~~~l~~~gv--~~~~~~~v~---~---------------------~v~~~~l~-----~~~ydavvlAtGa~--~~~ 531 (752)
T PRK12778 485 DVEIENLKKLGV--KFETDVIVG---K---------------------TITIEELE-----EEGFKGIFIASGAG--LPN 531 (752)
T ss_pred HHHHHHHHHCCC--EEECCCEEC---C---------------------cCCHHHHh-----hcCCCEEEEeCCCC--CCC
Confidence 444555666777 677765541 1 13333221 45699999999963 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchh-------hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKE-------AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~-------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
.|.+| |.+. . .++++.++...... .......+|+|+|||+|.+|+|+|..+.+.+.+ +||++.|
T Consensus 532 ~l~ip---G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~----~Vtlv~r 602 (752)
T PRK12778 532 FMNIP---GENS-N-GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAE----RVTIVYR 602 (752)
T ss_pred CCCCC---CCCC-C-CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCC----eEEEeee
Confidence 88888 5442 1 24454443211000 001234689999999999999999999888652 5999999
Q ss_pred cCc
Q 010421 234 TTH 236 (511)
Q Consensus 234 ~~~ 236 (511)
++.
T Consensus 603 ~~~ 605 (752)
T PRK12778 603 RSE 605 (752)
T ss_pred cCc
Confidence 764
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.88 E-value=1.6e-21 Score=208.45 Aligned_cols=164 Identities=26% Similarity=0.401 Sum_probs=109.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.. .+| .+....++.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~-gip------------------------~~~~~~~~~~ 247 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY-GIP------------------------RFRLPESVID 247 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee-cCC------------------------CCCCCHHHHH
Confidence 47999999999999999999 89999999999999998765 221 1112234455
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+....+.++++ .+++++.+. ++ +++.+. ...||+||+|||+. .+..
T Consensus 248 ~~~~~l~~~Gv--~i~~~~~v~-~d-----------------------v~~~~~------~~~~DaVilAtGa~--~~~~ 293 (652)
T PRK12814 248 ADIAPLRAMGA--EFRFNTVFG-RD-----------------------ITLEEL------QKEFDAVLLAVGAQ--KASK 293 (652)
T ss_pred HHHHHHHHcCC--EEEeCCccc-Cc-----------------------cCHHHH------HhhcCEEEEEcCCC--CCCC
Confidence 55555667777 677766431 11 112111 23499999999964 3455
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+.+| |.+. .| ++...++..... .......+|+|+|||+|.+|+|+|..+.+.+. ++|+++.|++.
T Consensus 294 ~~ip---G~~~-~g-v~~~~~~l~~~~-~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga----~~Vtlv~r~~~ 358 (652)
T PRK12814 294 MGIP---GEEL-PG-VISGIDFLRNVA-LGTALHPGKKVVVIGGGNTAIDAARTALRLGA----ESVTILYRRTR 358 (652)
T ss_pred CCCC---CcCc-CC-cEeHHHHHHHhh-cCCcccCCCeEEEECCCHHHHHHHHHHHHcCC----CeEEEeeecCc
Confidence 6677 5432 22 333333311000 00123578999999999999999999988764 35999999864
No 62
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=4e-21 Score=177.96 Aligned_cols=310 Identities=18% Similarity=0.220 Sum_probs=191.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccC-----------CCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT-----------DFPWPNRD 69 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 69 (511)
+.+|.+|||||.+|+++|++. .|.++.|+|..-.+||++-. +-.+|+..|-+. ++.|+...
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn------~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~ 92 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN------VGCVPKKVMWYAADYSEEMEDAKDYGFPINE 92 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe------eccccceeEEehhhhhHHhhhhhhcCCcccc
Confidence 358999999999999999999 99999999998799998765 223555554332 33444321
Q ss_pred CCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEE
Q 010421 70 DPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFL 148 (511)
Q Consensus 70 ~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 148 (511)
...| ....+.+--.+|..++ ++++...-+..|.-++-. +.+ ..++...|...++. ...+.++++
T Consensus 93 ~~~f-dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~----------a~f-~~~~~v~V~~~d~~---~~~Ytak~i 157 (478)
T KOG0405|consen 93 EGSF-DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR----------ARF-VSPGEVEVEVNDGT---KIVYTAKHI 157 (478)
T ss_pred ccCC-cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeee----------EEE-cCCCceEEEecCCe---eEEEecceE
Confidence 1222 2333333333333332 222233333444444421 000 11344445544442 335899999
Q ss_pred EEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 010421 149 VVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPC 228 (511)
Q Consensus 149 VlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~V 228 (511)
+|||| +.|.+|+|| |.+. -+.|..+.++. ..+||++|||+|++|+|+|.-++..+.. +
T Consensus 158 LIAtG---g~p~~PnIp---G~E~----gidSDgff~Le-------e~Pkr~vvvGaGYIavE~Agi~~gLgse-----t 215 (478)
T KOG0405|consen 158 LIATG---GRPIIPNIP---GAEL----GIDSDGFFDLE-------EQPKRVVVVGAGYIAVEFAGIFAGLGSE-----T 215 (478)
T ss_pred EEEeC---CccCCCCCC---chhh----ccccccccchh-------hcCceEEEEccceEEEEhhhHHhhcCCe-----e
Confidence 99999 678999999 6652 35566665542 4679999999999999999999999876 9
Q ss_pred EEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCC
Q 010421 229 TMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDH 308 (511)
Q Consensus 229 tl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 308 (511)
+++.|... ++..++ .
T Consensus 216 hlfiR~~k-vLR~FD-------~--------------------------------------------------------- 230 (478)
T KOG0405|consen 216 HLFIRQEK-VLRGFD-------E--------------------------------------------------------- 230 (478)
T ss_pred EEEEecch-hhcchh-------H---------------------------------------------------------
Confidence 99999764 221111 1
Q ss_pred ccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc---EEEcCCceeeccEEEEecCCCCcccccccCCCc
Q 010421 309 PFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG---LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~---v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~ 382 (511)
.+++..-+.+...+|.+++.. +.++.. ++ +..+.|+...+|.++||||.+|+..- +..+
T Consensus 231 ------------~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~---L~le 295 (478)
T KOG0405|consen 231 ------------MISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG---LNLE 295 (478)
T ss_pred ------------HHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc---ccch
Confidence 111122234445567777764 444432 22 44556766779999999999998632 1111
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcC
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g 436 (511)
-.+...++++.+.+.. ...++.|+|+.+|.... ....|+|-+.+|-+|..+-|
T Consensus 296 ~vGVk~~~~g~IivDe-Yq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 296 NVGVKTDKNGAIIVDE-YQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred hcceeeCCCCCEEEec-cccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 1122224444443221 23467899999998765 34457787888888886644
No 63
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.87 E-value=1.3e-20 Score=188.06 Aligned_cols=180 Identities=20% Similarity=0.175 Sum_probs=110.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||++|+.+|..| .|++|+++|+.+.+||.+.. .++ ......+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~-----------------------~~~~~~~~~~~ 73 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIP-----------------------EFRIPIERVRE 73 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCc-----------------------ccccCHHHHHH
Confidence 47999999999999999999 89999999999999887654 111 11112344555
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.++.+.++ ++ .+++++.|..+...... ..+.|.......+ ...+.||+||+|||+. .|..
T Consensus 74 ~~~~l~~~-~i--~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~~~---~~~~~~d~lviAtGs~--~~~~ 133 (352)
T PRK12770 74 GVKELEEA-GV--VFHTRTKVCCGEPLHEE------------EGDEFVERIVSLE---ELVKKYDAVLIATGTW--KSRK 133 (352)
T ss_pred HHHHHHhC-Ce--EEecCcEEeeccccccc------------cccccccccCCHH---HHHhhCCEEEEEeCCC--CCCc
Confidence 55555544 66 67778777654321000 0112222111111 1146899999999963 4677
Q ss_pred CCCCCCCCCCcccceEEeccccC-------cc-chhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYC-------KL-DKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~-------~~-~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
|.+| |.+. . .++.+.++. .. ..........+++|+|||+|.+|+|+|..|...+. ++|+++.|
T Consensus 134 ~~ip---g~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~----~~Vtvi~~ 204 (352)
T PRK12770 134 LGIP---GEDL-P-GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGA----EKVYLAYR 204 (352)
T ss_pred CCCC---Cccc-c-CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEee
Confidence 7787 5432 1 122221110 00 00000012358999999999999999999987654 24999998
Q ss_pred cCc
Q 010421 234 TTH 236 (511)
Q Consensus 234 ~~~ 236 (511)
++.
T Consensus 205 ~~~ 207 (352)
T PRK12770 205 RTI 207 (352)
T ss_pred cch
Confidence 754
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.86 E-value=1.3e-20 Score=208.79 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=113.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||||||+||..| .|++|+|||+.+.+||...+ .. +.+....++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~-gi------------------------p~~rl~~e~~ 483 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY-GI------------------------PSFRLPRDII 483 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec-cC------------------------CccCCCHHHH
Confidence 357999999999999999999 99999999999999886544 11 1222234566
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+...+.++++++ .+++++.|. .+ +++.+..+ ...||+||||||+. .|+
T Consensus 484 ~~~~~~l~~~Gv--~~~~~~~vg-~~-----------------------~~~~~l~~----~~~yDaViIATGa~--~pr 531 (1006)
T PRK12775 484 DREVQRLVDIGV--KIETNKVIG-KT-----------------------FTVPQLMN----DKGFDAVFLGVGAG--APT 531 (1006)
T ss_pred HHHHHHHHHCCC--EEEeCCccC-Cc-----------------------cCHHHHhh----ccCCCEEEEecCCC--CCC
Confidence 666666777887 777775431 00 22211100 24589999999974 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchh--------hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKE--------AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~--------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
.+++| |.+. +.+++..+|...... .......||+|+|||+|.+|+|+|..+.+.+.. .|+++.
T Consensus 532 ~l~Ip---G~~l--~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~----~Vtiv~ 602 (1006)
T PRK12775 532 FLGIP---GEFA--GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAP----TVRCVY 602 (1006)
T ss_pred CCCCC---CcCC--CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCC----EEEEEe
Confidence 88888 5432 235555443211000 001234789999999999999999888887653 589998
Q ss_pred ecCc
Q 010421 233 RTTH 236 (511)
Q Consensus 233 R~~~ 236 (511)
|+..
T Consensus 603 rr~~ 606 (1006)
T PRK12775 603 RRSE 606 (1006)
T ss_pred ecCc
Confidence 8754
No 65
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.85 E-value=6.6e-20 Score=189.73 Aligned_cols=162 Identities=24% Similarity=0.329 Sum_probs=104.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.. ..| .+....++..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~-gip------------------------~~~~~~~~~~ 197 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY-GIP------------------------DFKLEKEVID 197 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee-cCC------------------------cccCCHHHHH
Confidence 47999999999999999999 89999999999999987654 111 1112234555
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
...+.+.++++ .+++++.|.. + +..... ...||+||+|||.. .|..
T Consensus 198 ~~~~~~~~~gv--~~~~~~~v~~-~-----------------------~~~~~~------~~~~d~vvlAtGa~--~~~~ 243 (471)
T PRK12810 198 RRIELMEAEGI--EFRTNVEVGK-D-----------------------ITAEEL------LAEYDAVFLGTGAY--KPRD 243 (471)
T ss_pred HHHHHHHhCCc--EEEeCCEECC-c-----------------------CCHHHH------HhhCCEEEEecCCC--CCCc
Confidence 55556677787 7777765521 1 000010 34699999999964 4666
Q ss_pred CCCCCCCCCCcccceEEeccccCcc-----chh--hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKL-----DKE--AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~-----~~~--~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
+.+| |.+. . .+.+..++... ... .......+|+|+|||+|.+|+|+|..+.+.+.. +|+++.+
T Consensus 244 l~ip---G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~----~Vt~~~~ 313 (471)
T PRK12810 244 LGIP---GRDL-D-GVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAK----SVTQRDI 313 (471)
T ss_pred CCCC---CccC-C-CcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCC----eEEEccc
Confidence 7777 5432 1 23333222100 000 001235689999999999999999988887642 4774433
No 66
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.85 E-value=6.6e-20 Score=197.00 Aligned_cols=167 Identities=19% Similarity=0.300 Sum_probs=109.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+||||||+||++|..| .|++|+|||+.+.+||.+.+ .+|. +....++.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~-gip~------------------------~~l~~~~~ 380 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF-GIPA------------------------FKLDKSLL 380 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee-cCCC------------------------ccCCHHHH
Confidence 357999999999999999999 89999999999999998765 2222 11123455
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.....++++++ .++++++|.. + +++.+. ...||+||+|||+. .+.
T Consensus 381 ~~~~~~~~~~Gv--~~~~~~~v~~-----~-------------------i~~~~~------~~~~DavilAtGa~--~~~ 426 (654)
T PRK12769 381 ARRREIFSAMGI--EFELNCEVGK-----D-------------------ISLESL------LEDYDAVFVGVGTY--RSM 426 (654)
T ss_pred HHHHHHHHHCCe--EEECCCEeCC-----c-------------------CCHHHH------HhcCCEEEEeCCCC--CCC
Confidence 555566677787 6777776521 0 111111 23699999999975 344
Q ss_pred CCCCCCCCCCCcccceEEeccccC--------ccchh--hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYC--------KLDKE--AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~--------~~~~~--~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
.+.+| |.+. .| +++..+|. ..... .......+|+|+|||+|.+|+|+|..+.+.+. ++|++
T Consensus 427 ~l~i~---g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga----~~Vt~ 497 (654)
T PRK12769 427 KAGLP---NEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGA----SNVTC 497 (654)
T ss_pred CCCCC---CCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC----CeEEE
Confidence 55666 4332 22 22221110 00000 00012468999999999999999998888764 25999
Q ss_pred EEecCce
Q 010421 231 IVRTTHW 237 (511)
Q Consensus 231 ~~R~~~~ 237 (511)
+.|++..
T Consensus 498 i~~~~~~ 504 (654)
T PRK12769 498 AYRRDEA 504 (654)
T ss_pred eEecCCC
Confidence 9998653
No 67
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.85 E-value=3e-20 Score=177.30 Aligned_cols=307 Identities=14% Similarity=0.172 Sum_probs=183.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++++|+|+|+|++|.+.++.| .-++|+|++++..+-=+|.. |++ .-.......+.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL---pS~--------------------~vGTve~rSIv 110 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL---PST--------------------TVGTVELRSIV 110 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc---CCc--------------------cccceeehhhh
Confidence 457999999999999999999 77899999998765222221 111 12222334556
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC--CC-CceeEEEeCEEEEeecccCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH--NS-NSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~~~~~d~vVlAtG~~~~ 157 (511)
+-....+.+-.-. .-.+..+-..+++. .. +|+++.. ++ .....+.||+||+|+|+
T Consensus 111 EPIr~i~r~k~~~-~~y~eAec~~iDp~----------------~k--~V~~~s~t~~~~~~e~~i~YDyLViA~GA--- 168 (491)
T KOG2495|consen 111 EPIRAIARKKNGE-VKYLEAECTKIDPD----------------NK--KVHCRSLTADSSDKEFVIGYDYLVIAVGA--- 168 (491)
T ss_pred hhHHHHhhccCCC-ceEEecccEeeccc----------------cc--EEEEeeeccCCCcceeeecccEEEEeccC---
Confidence 6666666554321 12334455566652 12 3444432 21 33456889999999995
Q ss_pred CCCCCCCCCCCCCCcccceEEeccccCcc-----ch-----hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC-----
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKL-----DK-----EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG----- 222 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~~~~-----~~-----~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~----- 222 (511)
+++.+++|+......|--.+-|+.+.+.. .. ...++..+--+++|||||+||+|+|.+|+..-.+
T Consensus 169 ~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~ 248 (491)
T KOG2495|consen 169 EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKI 248 (491)
T ss_pred CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHh
Confidence 56777777332333343334444333210 00 0001112223699999999999999999865321
Q ss_pred ----CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCC
Q 010421 223 ----PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLP 298 (511)
Q Consensus 223 ----~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
++.-+||++...|. +++. +.+.+..+..
T Consensus 249 yp~l~~~i~vtLiEA~d~-iL~m-------------------------------------------Fdkrl~~yae---- 280 (491)
T KOG2495|consen 249 YPELKKDIKVTLIEAADH-ILNM-------------------------------------------FDKRLVEYAE---- 280 (491)
T ss_pred hhcchhheEEEeeccchh-HHHH-------------------------------------------HHHHHHHHHH----
Confidence 11123444444332 1111 1111111111
Q ss_pred cccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCC----ceeeccEEEEecCCCCcc
Q 010421 299 LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDN----TKLEADVVILCTGYDGKK 373 (511)
Q Consensus 299 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG----~~~~~D~VI~aTG~~~~~ 373 (511)
+.+.+.+|+++.+. +..++++.|+.+++ ++++.-.+|||||-.+..
T Consensus 281 -----------------------------~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 281 -----------------------------NQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred -----------------------------HHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence 24556678888885 77888888877654 569999999999999874
Q ss_pred cccccCCCcccccccCCCC--cccceeeecCCCCCceEEEeeccc----chhhhhHHHHHHHHHHHhcCC
Q 010421 374 KLKAFLPEPFQSLLEHPSG--LLPLYRGTIHPLIPNMAFVGYIES----VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~pnl~~iG~~~~----~~~~~~~e~qa~~~a~~l~g~ 437 (511)
-...+. ..+ ++.+ .+.+...+.+++.+|+|+||.+.. ..+..+|+.|+.|+|+++...
T Consensus 332 ~~k~lm----~~i--~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 332 VIKDLM----KQI--DEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred hhhhHh----hcC--CccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHH
Confidence 322211 111 2222 444666777899999999998763 234569999999999998643
No 68
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.85 E-value=9.8e-20 Score=187.78 Aligned_cols=170 Identities=22% Similarity=0.331 Sum_probs=112.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||++|+++|..| .|++|+|+|+.+.+||.+.. .+|. +....++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~-gip~------------------------~~~~~~~~ 194 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF-GIPS------------------------FKLDKAVL 194 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee-cCcc------------------------ccCCHHHH
Confidence 357999999999999999999 89999999999999987654 2221 11234566
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
++..+.++++|+ .++++++|... +.+.+. ...||+||+|||.. .+.
T Consensus 195 ~~~~~~~~~~Gv--~~~~~~~v~~~------------------------~~~~~~------~~~~D~vilAtGa~--~~~ 240 (467)
T TIGR01318 195 SRRREIFTAMGI--EFHLNCEVGRD------------------------ISLDDL------LEDYDAVFLGVGTY--RSM 240 (467)
T ss_pred HHHHHHHHHCCC--EEECCCEeCCc------------------------cCHHHH------HhcCCEEEEEeCCC--CCC
Confidence 666677788888 78888766210 111111 24699999999964 233
Q ss_pred CCCCCCCCCCCcccceEEeccccCc--------cc--hhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCK--------LD--KEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~--------~~--~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
.+.+| |.+. . .+.+..+|.. .. .........+|+|+|||+|.+|+|.|..+.+.+. ++||+
T Consensus 241 ~~~i~---g~~~-~-gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga----~~Vtv 311 (467)
T TIGR01318 241 RGGLP---GEDA-P-GVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGA----ASVTC 311 (467)
T ss_pred cCCCC---CcCC-C-CcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCC----CeEEE
Confidence 45566 4332 1 1333222110 00 0000012468999999999999999999888764 25999
Q ss_pred EEecCceeec
Q 010421 231 IVRTTHWTVP 240 (511)
Q Consensus 231 ~~R~~~~~~p 240 (511)
+.|++...+|
T Consensus 312 v~r~~~~~~~ 321 (467)
T TIGR01318 312 AYRRDEANMP 321 (467)
T ss_pred EEecCcccCC
Confidence 9998754333
No 69
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-19 Score=158.01 Aligned_cols=274 Identities=18% Similarity=0.252 Sum_probs=179.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
..+|+|||+||++..||.++ ..++.++||--- .+| .-|+-.+.+....-.|+.|| .-..+.++.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~~-----i~pGGQLtTTT~veNfPGFP-------dgi~G~~l~d 74 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-ANG-----IAPGGQLTTTTDVENFPGFP-------DGITGPELMD 74 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeee-ccC-----cCCCceeeeeeccccCCCCC-------cccccHHHHH
Confidence 45899999999999999999 889999999621 111 22233333333333444442 2246889999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
-+++.+.+++. .| +..+|.+++.. ...++|.+... .+.+|.||+|||+. .+.
T Consensus 75 ~mrkqs~r~Gt--~i-~tEtVskv~~s----------------skpF~l~td~~------~v~~~avI~atGAs---AkR 126 (322)
T KOG0404|consen 75 KMRKQSERFGT--EI-ITETVSKVDLS----------------SKPFKLWTDAR------PVTADAVILATGAS---AKR 126 (322)
T ss_pred HHHHHHHhhcc--ee-eeeehhhcccc----------------CCCeEEEecCC------ceeeeeEEEecccc---eee
Confidence 99999999997 33 44577777762 44566766443 78999999999975 345
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
..+|+. |...|-.+-+.++..++- +...+++|-.+|||||.||+|=|..|.+.+.+ |++++|+..+
T Consensus 127 l~~pg~-ge~~fWqrGiSaCAVCDG----aapifrnk~laVIGGGDsA~EEA~fLtkyask-----Vyii~Rrd~f---- 192 (322)
T KOG0404|consen 127 LHLPGE-GEGEFWQRGISACAVCDG----AAPIFRNKPLAVIGGGDSAMEEALFLTKYASK-----VYIIHRRDHF---- 192 (322)
T ss_pred eecCCC-CcchHHhcccchhhcccC----cchhhcCCeeEEEcCcHHHHHHHHHHHhhccE-----EEEEEEhhhh----
Confidence 556633 333355455666666652 24568999999999999999999999988765 9999998751
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
|.+..|..
T Consensus 193 --------------RAs~~Mq~---------------------------------------------------------- 200 (322)
T KOG0404|consen 193 --------------RASKIMQQ---------------------------------------------------------- 200 (322)
T ss_pred --------------hHHHHHHH----------------------------------------------------------
Confidence 11111100
Q ss_pred cCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEE---cCC--ceeeccEEEEecCCCCcccccccCCCcccccccCC
Q 010421 322 MPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEF---EDN--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHP 390 (511)
Q Consensus 322 ~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~---~dG--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
+++.+.+|+++.+. +.+.-++ ++.. +.| +.++++-+.++.|-.|+..+++ + ....+.
T Consensus 201 ------ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~----g--qve~d~ 268 (322)
T KOG0404|consen 201 ------RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLK----G--QVELDE 268 (322)
T ss_pred ------HHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhc----C--ceeecc
Confidence 23445566665554 2222222 1222 234 3499999999999999987643 1 111244
Q ss_pred CCcccceeeecCCCCCceEEEeeccc
Q 010421 391 SGLLPLYRGTIHPLIPNMAFVGYIES 416 (511)
Q Consensus 391 ~~~~~ly~~~~~~~~pnl~~iG~~~~ 416 (511)
++.+.+-.+...++.|.+|+.|....
T Consensus 269 ~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 269 DGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred CceEEeccCcccccccceeeccccch
Confidence 45554445677788999999997653
No 70
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.84 E-value=1.2e-19 Score=186.26 Aligned_cols=237 Identities=20% Similarity=0.230 Sum_probs=151.1
Q ss_pred HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE--eCEEEEeecccCCCCCC
Q 010421 84 ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG--FEFLVVCTGKYGDVPII 161 (511)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~d~vVlAtG~~~~~p~~ 161 (511)
+.+.+++++ .++++++|+.+++. +. +|.+.+..+++ .+. ||+||+||| ..|+.
T Consensus 51 ~~~~~~~gv--~~~~~~~V~~id~~----------------~~--~v~~~~~~~~~--~~~~~yd~lIiATG---~~p~~ 105 (427)
T TIGR03385 51 EVFIKKRGI--DVKTNHEVIEVNDE----------------RQ--TVVVRNNKTNE--TYEESYDYLILSPG---ASPIV 105 (427)
T ss_pred HHHHHhcCC--eEEecCEEEEEECC----------------CC--EEEEEECCCCC--EEecCCCEEEECCC---CCCCC
Confidence 445577888 78889999999862 22 45555432223 456 999999999 46788
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhh-hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEA-ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
|.+| |.+. ..+++........... .-....+++|+|||+|.+|+|+|..|++.+.+ |+++.|.+..+.+
T Consensus 106 ~~i~---G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~-----Vtli~~~~~~~~~ 175 (427)
T TIGR03385 106 PNIE---GINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKN-----VTLIHRSERILNK 175 (427)
T ss_pred CCCC---CcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCc-----EEEEECCcccCcc
Confidence 8888 5431 1233322221110000 00124678999999999999999999987654 9999998753222
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ...
T Consensus 176 ~~~-----------~~~--------------------------------------------------------------- 181 (427)
T TIGR03385 176 LFD-----------EEM--------------------------------------------------------------- 181 (427)
T ss_pred ccC-----------HHH---------------------------------------------------------------
Confidence 111 000
Q ss_pred ccCCchhhhhccCeEEEEeCc-eeEEeCCc--EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccce
Q 010421 321 IMPEGFFSEAEKGKIVFKRAS-KWWFWKGG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLY 397 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly 397 (511)
.+.+.+.+++.+|+++.+. +.++++++ +++.+|+++++|.||+|||++++..+.+..+ +..+.++.+.+.
T Consensus 182 --~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g-----l~~~~~G~i~vd 254 (427)
T TIGR03385 182 --NQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSG-----LKLGETGAIWVN 254 (427)
T ss_pred --HHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcC-----cccCCCCCEEEC
Confidence 0011123445567777664 77776655 3678899999999999999999876543221 111233444444
Q ss_pred eeecCCCCCceEEEeeccc-----------chhhhhHHHHHHHHHHHhcCC
Q 010421 398 RGTIHPLIPNMAFVGYIES-----------VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 398 ~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~~a~~l~g~ 437 (511)
..+ .++.||+|++|.... ......+..|++++|+.|.|+
T Consensus 255 ~~~-~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 255 EKF-QTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred CCc-EeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 433 357899999997653 123467999999999999875
No 71
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.84 E-value=3.2e-19 Score=198.94 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=170.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||||||+||..+ .|++|+|+|+.+.+||.+.... . . ..-.+..++..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~-~--------------~--------~~g~~~~~~~~ 219 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA-E--------------T--------IDGKPAADWAA 219 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc-c--------------c--------cCCccHHHHHH
Confidence 47999999999999999999 9999999999999999875411 0 0 00012233322
Q ss_pred HHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE-EE-------eC-CCCceeEEEeCEEEEe
Q 010421 82 YLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA-VQ-------TH-NSNSIQRYGFEFLVVC 151 (511)
Q Consensus 82 yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------~~-~~~~~~~~~~d~vVlA 151 (511)
-+...++.+ ++ .+..+++|..+... .....+. .. .+ ..+....+.+|+||||
T Consensus 220 ~~~~~l~~~~~v--~v~~~t~V~~i~~~----------------~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILA 281 (985)
T TIGR01372 220 ATVAELTAMPEV--TLLPRTTAFGYYDH----------------NTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLA 281 (985)
T ss_pred HHHHHHhcCCCc--EEEcCCEEEEEecC----------------CeEEEEEEeeeccccccCCccccceEEEEcCEEEEc
Confidence 233333334 35 67778888877531 0000010 00 00 0112236889999999
Q ss_pred ecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 010421 152 TGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMI 231 (511)
Q Consensus 152 tG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~ 231 (511)
||+ .|+.|.+| |.+. .| ++......... .......+++|+|||+|.+|+|+|..|++.+.+ .|+++
T Consensus 282 TGa---~~r~~pip---G~~~-pg-V~~~~~~~~~l--~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~----vV~vv 347 (985)
T TIGR01372 282 TGA---HERPLVFA---NNDR-PG-VMLAGAARTYL--NRYGVAPGKRIVVATNNDSAYRAAADLLAAGIA----VVAII 347 (985)
T ss_pred CCC---CCcCCCCC---CCCC-CC-cEEchHHHHHH--HhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCc----eEEEE
Confidence 995 56777788 5432 22 33221111100 001234689999999999999999999988743 37777
Q ss_pred EecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccc
Q 010421 232 VRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFE 311 (511)
Q Consensus 232 ~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 311 (511)
.+++.. .+
T Consensus 348 ~~~~~~-~~----------------------------------------------------------------------- 355 (985)
T TIGR01372 348 DARADV-SP----------------------------------------------------------------------- 355 (985)
T ss_pred ccCcch-hH-----------------------------------------------------------------------
Confidence 665420 00
Q ss_pred cccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEc----CCceeeccEEEEecCCCCcccccccCCCc
Q 010421 312 EDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFE----DNTKLEADVVILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~----dG~~~~~D~VI~aTG~~~~~~~~~~~~~~ 382 (511)
.+.+.+++.+|+++.+. +.++.++ +|++. +++++++|.|++++|++|+..+...+...
T Consensus 356 -------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 356 -------------EARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred -------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC
Confidence 00123444556766664 5666544 35554 45569999999999999998765433221
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeecccchhhhhHHHHHHHHHHHh
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLI 434 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa~~~a~~l 434 (511)
+ ..+.....+ .-.++.|++|++|.......+..+..+++.++..+
T Consensus 423 ~-----~~~~~~~~~--~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 423 L-----AWDAAIAAF--LPGDAVQGCILAGAANGLFGLAAALADGAAAGAAA 467 (985)
T ss_pred e-----eeccccCce--ecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHH
Confidence 1 111111112 11255799999998776655666777777776554
No 72
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=1.1e-18 Score=171.35 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=138.7
Q ss_pred CeEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccC-CCcCceeccCCCCcccc--CCCC--C---------
Q 010421 5 SKIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHRSDYEF--TDFP--W--------- 65 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~~~--~~~~--~--------- 65 (511)
++|+|||+|++|+++|.+| ....|.|||+...+|+.-.+ +.-|...+|+|+..|+. +|.| |
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 6899999999999999999 22239999999999865544 35566788888887763 4422 0
Q ss_pred ----CC---CCCCCCCChHHHHHHHHHHHHhcCCCC----ceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe
Q 010421 66 ----PN---RDDPGFPSYTEILDYLESYAKHFDVFK----CVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT 134 (511)
Q Consensus 66 ----~~---~~~~~~~~~~~~~~yl~~~~~~~~~~~----~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 134 (511)
++ .+...|+++.-+.+|+.++...+-... .....++++++.+.. +.+.|.++..+
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~--------------n~~~~~~~~~~ 147 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT--------------NAGGYLVTTAD 147 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc--------------CCceEEEecCC
Confidence 00 114678888899999887766542211 223456777777631 14667777777
Q ss_pred CCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccce-EEeccccCccchhhhhhccCCCcEEEECCCCCHHHHH
Q 010421 135 HNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQ-VLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLA 213 (511)
Q Consensus 135 ~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~-~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a 213 (511)
+. ...||.+|+|||+. .|..+.. . ..+.|. -+++..|.... ......+.+|+|+|+|.+.+|..
T Consensus 148 g~-----~~~ad~~Vlatgh~--~~~~~~~----~-~~~~~~~~~ia~~~~~~~---ld~v~~~drVli~GsgLt~~D~v 212 (474)
T COG4529 148 GP-----SEIADIIVLATGHS--APPADPA----A-RDLKGSPRLIADPYPANA---LDGVDADDRVLIVGSGLTSIDQV 212 (474)
T ss_pred CC-----eeeeeEEEEeccCC--CCCcchh----h-hccCCCcceeccccCCcc---cccccCCCceEEecCCchhHHHH
Confidence 65 78999999999974 3333221 1 222222 24444443210 12445677899999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEecCceeecCcc
Q 010421 214 KECAESNQGPEGQPCTMIVRTTHWTVPHYR 243 (511)
Q Consensus 214 ~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~ 243 (511)
..|.+.+.+ .+||++.|++ +.|...
T Consensus 213 ~~l~~~gh~---g~It~iSRrG--l~~~~h 237 (474)
T COG4529 213 LVLRRRGHK---GPITAISRRG--LVPRPH 237 (474)
T ss_pred HHHhccCCc---cceEEEeccc--cccCCC
Confidence 999998775 7799999998 455443
No 73
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.82 E-value=2.9e-19 Score=173.94 Aligned_cols=266 Identities=15% Similarity=0.221 Sum_probs=174.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
.+.++|||+|++|..|+.++ .+ -+++++-+...+ .|...++ |+...+ ..+.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-------pydr~~L--s~~~~~---------------~~~~~ 129 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-------PYDRARL--SKFLLT---------------VGEGL 129 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-------cccchhc--ccceee---------------ccccc
Confidence 35799999999999999999 33 367777765544 3332221 000000 01111
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.....++.+.+++ ...+++.|+.++...+ +|.+.+++ .+.|+++||||| +.|
T Consensus 130 a~r~~e~Yke~gI--e~~~~t~v~~~D~~~K------------------~l~~~~Ge-----~~kys~LilATG---s~~ 181 (478)
T KOG1336|consen 130 AKRTPEFYKEKGI--ELILGTSVVKADLASK------------------TLVLGNGE-----TLKYSKLIIATG---SSA 181 (478)
T ss_pred cccChhhHhhcCc--eEEEcceeEEeecccc------------------EEEeCCCc-----eeecceEEEeec---Ccc
Confidence 1111223456777 8899999999997421 57777776 899999999999 467
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
+.|++| |.+.. .+....+..+... .......+++|+|+|+|..|+|+|.+|...+. +||++.+.+ |.+
T Consensus 182 ~~l~~p---G~~~~--nv~~ireieda~~-l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~-----~VT~V~~e~-~~~ 249 (478)
T KOG1336|consen 182 KTLDIP---GVELK--NVFYLREIEDANR-LVAAIQLGGKVVCVGGGFIGMEVAAALVSKAK-----SVTVVFPEP-WLL 249 (478)
T ss_pred ccCCCC---Ccccc--ceeeeccHHHHHH-HHHHhccCceEEEECchHHHHHHHHHHHhcCc-----eEEEEccCc-cch
Confidence 888888 65421 1222222221110 01223457889999999999999999988754 599999976 444
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
|+.. ..
T Consensus 250 ~~lf----------~~---------------------------------------------------------------- 255 (478)
T KOG1336|consen 250 PRLF----------GP---------------------------------------------------------------- 255 (478)
T ss_pred hhhh----------hH----------------------------------------------------------------
Confidence 4321 00
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCCc------EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCC
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG------LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSG 392 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~------v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
.+...+.+.+.+.+|++..+. +.+++++. |.+.||+++++|+||+++|-+|+.++... +...+..+
T Consensus 256 -~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~------g~~~~~~G 328 (478)
T KOG1336|consen 256 -SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK------GILLDSKG 328 (478)
T ss_pred -HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc------cceecccC
Confidence 011122345666778888776 66776543 78899999999999999999999876431 22335667
Q ss_pred cccceeeecCCCCCceEEEeecc
Q 010421 393 LLPLYRGTIHPLIPNMAFVGYIE 415 (511)
Q Consensus 393 ~~~ly~~~~~~~~pnl~~iG~~~ 415 (511)
.+.++..+. .++||+|++|...
T Consensus 329 ~i~V~~~f~-t~~~~VyAiGDva 350 (478)
T KOG1336|consen 329 GIKVDEFFQ-TSVPNVYAIGDVA 350 (478)
T ss_pred CEeehhcee-eccCCccccccee
Confidence 788887654 5699999999654
No 74
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.81 E-value=1.7e-18 Score=183.33 Aligned_cols=163 Identities=25% Similarity=0.395 Sum_probs=104.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+||||||+||++|..| .|++|+|+|+.+.+||.+.. ..|. +.-..++.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~-gip~------------------------~~~~~~~~~ 191 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY-GIPA------------------------YRLPREVLD 191 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee-cCCC------------------------ccCCHHHHH
Confidence 47899999999999999999 89999999999999997765 2211 111123344
Q ss_pred HHHHHHHhcCCCCceEeeeEE-EEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKV-VEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.-.+.+.++++ .+.+++++ .++.. ... ...||+||+|||.. .+.
T Consensus 192 ~~l~~~~~~Gv--~~~~~~~~~~~~~~-------------------------~~~------~~~~D~Vi~AtG~~--~~~ 236 (564)
T PRK12771 192 AEIQRILDLGV--EVRLGVRVGEDITL-------------------------EQL------EGEFDAVFVAIGAQ--LGK 236 (564)
T ss_pred HHHHHHHHCCC--EEEeCCEECCcCCH-------------------------HHH------HhhCCEEEEeeCCC--CCC
Confidence 44445666777 67777654 22111 000 22489999999975 233
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+.++ +.+ ..| +++...+..... .......+++|+|||+|.+|+|.+..+.+.+. ++|+++.|.+.
T Consensus 237 ~~~i~---g~~-~~g-v~~~~~~l~~~~-~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga----~~v~ii~r~~~ 302 (564)
T PRK12771 237 RLPIP---GED-AAG-VLDAVDFLRAVG-EGEPPFLGKRVVVIGGGNTAMDAARTARRLGA----EEVTIVYRRTR 302 (564)
T ss_pred cCCCC---CCc-cCC-cEEHHHHHHHhh-ccCCcCCCCCEEEECChHHHHHHHHHHHHcCC----CEEEEEEecCc
Confidence 34555 432 122 333322211000 00123468999999999999999988877763 25999999764
No 75
>PRK13984 putative oxidoreductase; Provisional
Probab=99.80 E-value=1.9e-18 Score=184.64 Aligned_cols=166 Identities=19% Similarity=0.283 Sum_probs=105.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||+|++|+++|..| .|++|+|+|+.+.+||.+.. ..| .+....++.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~-~i~------------------------~~~~~~~~~ 336 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY-GIP------------------------SYRLPDEAL 336 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee-cCC------------------------cccCCHHHH
Confidence 357899999999999999999 89999999999999887654 111 111123444
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.......+++++ .++++++|.. + +..+.. ...||+||+|||+. .|+
T Consensus 337 ~~~~~~~~~~gv--~~~~~~~v~~-~-----------------------~~~~~~------~~~yD~vilAtGa~--~~r 382 (604)
T PRK13984 337 DKDIAFIEALGV--KIHLNTRVGK-D-----------------------IPLEEL------REKHDAVFLSTGFT--LGR 382 (604)
T ss_pred HHHHHHHHHCCc--EEECCCEeCC-c-----------------------CCHHHH------HhcCCEEEEEcCcC--CCc
Confidence 444456667787 7777776631 0 111111 34699999999964 467
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchh----hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCC-CCCcEEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKE----AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGP-EGQPCTMIV 232 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~----~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~-~~~~Vtl~~ 232 (511)
.+++| |.+. . .++++.++...... .......+++|+|||||.+|+|+|..+++.+... ...+|+++.
T Consensus 383 ~l~i~---G~~~-~-gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 383 STRIP---GTDH-P-DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred cCCCC---CcCC-c-CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 77788 5432 1 23333333110000 0001134789999999999999999998764210 012477764
No 76
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.80 E-value=3.3e-18 Score=183.11 Aligned_cols=166 Identities=19% Similarity=0.295 Sum_probs=110.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||++||++|..| .|++|+|||+.+.+||.|.+ ..|.. ....++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~-gip~~------------------------~l~~~~~ 363 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF-GIPPF------------------------KLDKTVL 363 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec-cCCcc------------------------cCCHHHH
Confidence 458999999999999999999 89999999999999998876 22221 1123455
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.....++.+|+ .++++++|.. + +++.+. ...||+||+|||+. .+.
T Consensus 364 ~~~~~~~~~~Gv--~~~~~~~v~~-----~-------------------~~~~~l------~~~~DaV~latGa~--~~~ 409 (639)
T PRK12809 364 SQRREIFTAMGI--DFHLNCEIGR-----D-------------------ITFSDL------TSEYDAVFIGVGTY--GMM 409 (639)
T ss_pred HHHHHHHHHCCe--EEEcCCccCC-----c-------------------CCHHHH------HhcCCEEEEeCCCC--CCC
Confidence 555566777887 7777776521 0 112111 34689999999975 455
Q ss_pred CCCCCCCCCCCcccceEEeccccC--------ccch--hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYC--------KLDK--EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~--------~~~~--~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
.+.+| |.+. .| ++++.+|. .... ........+|+|+|||+|.+|+|.|..+.+.+. ++||+
T Consensus 410 ~~~i~---g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga----~~Vt~ 480 (639)
T PRK12809 410 RADLP---HEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA----ASVTC 480 (639)
T ss_pred CCCCC---CCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC----CeEEE
Confidence 56677 4332 22 33221111 0000 000123468999999999999999998887764 35999
Q ss_pred EEecCc
Q 010421 231 IVRTTH 236 (511)
Q Consensus 231 ~~R~~~ 236 (511)
+.|+..
T Consensus 481 v~rr~~ 486 (639)
T PRK12809 481 AYRRDE 486 (639)
T ss_pred eeecCc
Confidence 999764
No 77
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.79 E-value=1.1e-18 Score=163.89 Aligned_cols=319 Identities=17% Similarity=0.156 Sum_probs=182.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccccCCC-CCCCC---CCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYEFTDF-PWPNR---DDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 76 (511)
.+||+|||+||+|..||... .|++-+++|++..+||++... ..|+-.+-..+++|..... .+... .+..-...
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 58999999999999999999 999999999999999998651 3444333222222221111 00000 01111223
Q ss_pred HHHHHHHHHHHHhcC--CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 77 TEILDYLESYAKHFD--VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+.++.-....++++. +...+. .-+|+-+.-. +.+ .+.-+|.+...+ ++.+.+.++.+|+|||+
T Consensus 119 ~~~~~~k~~~vk~Lt~gi~~lfk-knkV~~~kG~----------gsf---~~p~~V~v~k~d-g~~~ii~aKnIiiATGS 183 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGIENLFK-KNKVTYVKGF----------GSF---LDPNKVSVKKID-GEDQIIKAKNIIIATGS 183 (506)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhh-hcCeEEEeee----------Eee---cCCceEEEeccC-CCceEEeeeeEEEEeCC
Confidence 334433333333321 100011 1123322210 000 111235554432 34558999999999996
Q ss_pred cCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 155 YGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 155 ~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
. .+. +| |+..-..+++.|..-..+ ..-+|+++|||+|.+|.|+..-..+.+.. ||++.--
T Consensus 184 e--V~~---~P---GI~IDekkIVSStgALsL-------~~vPk~~~viG~G~IGLE~gsV~~rLGse-----VT~VEf~ 243 (506)
T KOG1335|consen 184 E--VTP---FP---GITIDEKKIVSSTGALSL-------KEVPKKLTVIGAGYIGLEMGSVWSRLGSE-----VTVVEFL 243 (506)
T ss_pred c--cCC---CC---CeEecCceEEecCCccch-------hhCcceEEEEcCceeeeehhhHHHhcCCe-----EEEEEeh
Confidence 3 444 44 444323345555444443 25679999999999999999999999876 9999765
Q ss_pred CceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccc
Q 010421 235 THWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDY 314 (511)
Q Consensus 235 ~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 314 (511)
+. +.+.. |..
T Consensus 244 ~~-i~~~m-------D~E-------------------------------------------------------------- 253 (506)
T KOG1335|consen 244 DQ-IGGVM-------DGE-------------------------------------------------------------- 253 (506)
T ss_pred hh-hcccc-------CHH--------------------------------------------------------------
Confidence 54 22221 111
Q ss_pred ccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc-----EEEc---CCc--eeeccEEEEecCCCCcccccccCCCcc
Q 010421 315 ASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG-----LEFE---DNT--KLEADVVILCTGYDGKKKLKAFLPEPF 383 (511)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~-----v~~~---dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~ 383 (511)
++..+...+++.+++++.+. +...+.++ |.+. +|. .++||+++.|+|.+|=. +-|+.+-
T Consensus 254 -------isk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t---~GLgle~ 323 (506)
T KOG1335|consen 254 -------ISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT---EGLGLEK 323 (506)
T ss_pred -------HHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc---cCCChhh
Confidence 11112223444456666654 44444322 3333 333 48999999999999743 2222221
Q ss_pred cccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCCC
Q 010421 384 QSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 384 ~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.++..+..+.+.+.. -+.+.+|||+.||..... ...+-||-|+..+...+.|..
T Consensus 324 iGi~~D~r~rv~v~~-~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~ 378 (506)
T KOG1335|consen 324 IGIELDKRGRVIVNT-RFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH 378 (506)
T ss_pred cccccccccceeccc-cccccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence 222223444443333 356788999999987653 445789999999999888763
No 78
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.79 E-value=1.4e-17 Score=172.37 Aligned_cols=165 Identities=22% Similarity=0.297 Sum_probs=106.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||++|+++|..| .|++|+|||+.+.+||...+ ..| .+....++..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~-gip------------------------~~~~~~~~~~ 197 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY-GIP------------------------NMKLDKAIVD 197 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec-cCC------------------------CccCCHHHHH
Confidence 47999999999999999999 89999999999988886544 111 1111233444
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
...+.++.+++ .+++++.|.. + +.... ....||.||+|||.. .|..
T Consensus 198 ~~~~~~~~~Gv--~~~~~~~v~~-~-----------------------~~~~~------~~~~~d~VilAtGa~--~~~~ 243 (485)
T TIGR01317 198 RRIDLLSAEGI--DFVTNTEIGV-D-----------------------ISADE------LKEQFDAVVLAGGAT--KPRD 243 (485)
T ss_pred HHHHHHHhCCC--EEECCCEeCC-c-----------------------cCHHH------HHhhCCEEEEccCCC--CCCc
Confidence 44455666787 7777776631 1 11000 135699999999964 4777
Q ss_pred CCCCCCCCCCcccceEEeccccCc------cch---hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCK------LDK---EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~------~~~---~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
+.+| |.+. .| +....++.. ... ........+|+|+|||+|.+|+|+|..+.+.+. +.|+++.
T Consensus 244 l~i~---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga----~~V~vv~ 314 (485)
T TIGR01317 244 LPIP---GREL-KG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGA----ASVHQFE 314 (485)
T ss_pred CCCC---CcCC-CC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC----CEEEEEE
Confidence 7788 5431 22 222211100 000 000112578999999999999999888887764 2599998
Q ss_pred ecCc
Q 010421 233 RTTH 236 (511)
Q Consensus 233 R~~~ 236 (511)
+.+.
T Consensus 315 ~~~~ 318 (485)
T TIGR01317 315 IMPK 318 (485)
T ss_pred ecCC
Confidence 7654
No 79
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.78 E-value=2.3e-17 Score=168.38 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=109.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
+.++|+||||||||++||..| .|++|+|||+.+.+||...+.. .+.++....
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv------------------------aP~~~~~k~ 80 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV------------------------APDHPETKN 80 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc------------------------CCCcchhHH
Confidence 357899999999999999999 3899999999999999776511 123333455
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+...+..+.+..++ .++.|.+|- . .+++.+. ...||.||+|||+. .
T Consensus 81 v~~~~~~~~~~~~v--~~~~nv~vg---~---------------------dvtl~~L------~~~yDaVIlAtGa~--~ 126 (491)
T PLN02852 81 VTNQFSRVATDDRV--SFFGNVTLG---R---------------------DVSLSEL------RDLYHVVVLAYGAE--S 126 (491)
T ss_pred HHHHHHHHHHHCCe--EEEcCEEEC---c---------------------cccHHHH------hhhCCEEEEecCCC--C
Confidence 66666666666555 444444331 1 1333322 24699999999964 3
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccc---h---hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC----------
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLD---K---EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG---------- 222 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~---~---~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~---------- 222 (511)
++.+.+| |.+. . .++.+.++.... . ........+++|+|||+|.+|+|+|..|++.+..
T Consensus 127 ~~~l~Ip---G~d~-~-gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~ 201 (491)
T PLN02852 127 DRRLGIP---GEDL-P-GVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHA 201 (491)
T ss_pred CCCCCCC---CCCC-C-CeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHH
Confidence 4566777 5432 1 244443331100 0 0001124689999999999999999998764100
Q ss_pred ------CCCCcEEEEEecCc
Q 010421 223 ------PEGQPCTMIVRTTH 236 (511)
Q Consensus 223 ------~~~~~Vtl~~R~~~ 236 (511)
...++|+++.|+..
T Consensus 202 l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 202 LEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred HHHHhhCCCCEEEEEEcCCh
Confidence 12357999999873
No 80
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.77 E-value=7.3e-18 Score=171.66 Aligned_cols=287 Identities=16% Similarity=0.198 Sum_probs=181.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCC---
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFP--- 74 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 74 (511)
++.+++|||.|++|..+..++ .-++|++|-..+++ .|.-..+ ++.++
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~-------nY~Ri~L------------------s~vl~~~~ 56 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP-------NYNRILL------------------SSVLAGEK 56 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc-------cccceee------------------ccccCCCc
Confidence 357899999999999999998 33689999887766 4544433 11221
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+.+++.---.++.++.++ +++.+.+|+.|++. ++ .|+.+.+. ++.||+||+|||
T Consensus 57 ~~edi~l~~~dwy~~~~i--~L~~~~~v~~idr~--~k----------------~V~t~~g~-----~~~YDkLilATG- 110 (793)
T COG1251 57 TAEDISLNRNDWYEENGI--TLYTGEKVIQIDRA--NK----------------VVTTDAGR-----TVSYDKLIIATG- 110 (793)
T ss_pred cHHHHhccchhhHHHcCc--EEEcCCeeEEeccC--cc----------------eEEccCCc-----EeecceeEEecC-
Confidence 344544444566777888 89999999999983 11 46666665 889999999999
Q ss_pred cCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 155 YGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 155 ~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
+.|.+|++| |.+.+. ++--..+.+......- ....++-+|||+|.-|+|.|..|...+-. +++++=.
T Consensus 111 --S~pfi~PiP---G~~~~~--v~~~R~i~D~~am~~~-ar~~~~avVIGGGLLGlEaA~~L~~~Gm~-----~~Vvh~~ 177 (793)
T COG1251 111 --SYPFILPIP---GSDLPG--VFVYRTIDDVEAMLDC-ARNKKKAVVIGGGLLGLEAARGLKDLGME-----VTVVHIA 177 (793)
T ss_pred --ccccccCCC---CCCCCC--eeEEecHHHHHHHHHH-HhccCCcEEEccchhhhHHHHHHHhCCCc-----eEEEeec
Confidence 568888899 666442 2222333332211111 23456689999999999999999998865 7877665
Q ss_pred CceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccc
Q 010421 235 THWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDY 314 (511)
Q Consensus 235 ~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 314 (511)
+..+-.+. .......+.
T Consensus 178 ~~lMerQL---------------------------------------D~~ag~lL~------------------------ 194 (793)
T COG1251 178 PTLMERQL---------------------------------------DRTAGRLLR------------------------ 194 (793)
T ss_pred chHHHHhh---------------------------------------hhHHHHHHH------------------------
Confidence 53111000 000011111
Q ss_pred ccccccccCCchhhhhccCeEEEEeCc-eeEEe----CCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 315 ASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW----KGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~----~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
..+.+.+++++.+. ..++. ..+|.|+||+++++|.||+|+|++|+..+... .++..+
T Consensus 195 -------------~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~-----aGlavn 256 (793)
T COG1251 195 -------------RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKE-----AGLAVN 256 (793)
T ss_pred -------------HHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHh-----cCcCcC
Confidence 12333344444432 12221 24589999999999999999999999765321 111112
Q ss_pred CCCcccceeeecCCCCCceEEEeeccc-----chhhhhHHHHHHHHHHHhcCC
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIES-----VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~-----~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+ ++.+..++ .+..|++|++|-... .+....+=-|++.+|..+.+.
T Consensus 257 r--GIvvnd~m-qTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~ 306 (793)
T COG1251 257 R--GIVVNDYM-QTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGG 306 (793)
T ss_pred C--Ceeecccc-cccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccC
Confidence 2 44455544 367899999994322 122233445899999988775
No 81
>PRK09897 hypothetical protein; Provisional
Probab=99.77 E-value=4.7e-17 Score=167.99 Aligned_cols=195 Identities=20% Similarity=0.230 Sum_probs=119.6
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCcc--ccCCCcCceeccCCCCccccCCCC--CCCC--------
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGI--WKSCSYNSTKLQSHRSDYEFTDFP--WPNR-------- 68 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~--w~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------- 68 (511)
++|+|||||++|+++|.+| ..++|+|||++..+|.. |.. .-++..++++...++.+..+ +-.|
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~-~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD-EENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC-CCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 5899999999999999999 34689999999888843 332 12222222221112211110 0000
Q ss_pred -----------CCCCCCChHHHHHHHHHHHHhc-------CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 69 -----------DDPGFPSYTEILDYLESYAKHF-------DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 69 -----------~~~~~~~~~~~~~yl~~~~~~~-------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
....|+++..+.+|+++..+.+ +..-.++.+++|++++.. ++.|.|
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~----------------~~g~~V 144 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQIT----------------NAGVML 144 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEe----------------CCEEEE
Confidence 0246788888888887765543 211145667899999873 456777
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHH
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAI 210 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~ 210 (511)
++.++. . .+.+|+||+|||+. .|..+. +.. -+....|.... .....+.+|+|+|.|.|++
T Consensus 145 ~t~~gg--~--~i~aD~VVLAtGh~--~p~~~~-----~~~-----~yi~~pw~~~~----~~~i~~~~V~I~GtGLt~i 204 (534)
T PRK09897 145 ATNQDL--P--SETFDLAVIATGHV--WPDEEE-----ATR-----TYFPSPWSGLM----EAKVDACNVGIMGTSLSGL 204 (534)
T ss_pred EECCCC--e--EEEcCEEEECCCCC--CCCCCh-----hhc-----cccCCCCcchh----hcCCCCCeEEEECCCHHHH
Confidence 765431 1 68999999999975 343321 111 11123332210 1123478999999999999
Q ss_pred HHHHHHHHhcCC--------------C--CCCcEEEEEecCc
Q 010421 211 DLAKECAESNQG--------------P--EGQPCTMIVRTTH 236 (511)
Q Consensus 211 d~a~~l~~~~~~--------------~--~~~~Vtl~~R~~~ 236 (511)
|++..|...++. | ...+++++.|++.
T Consensus 205 D~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 205 DAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred HHHHHHHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 999999865311 0 1246999999875
No 82
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.3e-16 Score=144.99 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=124.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcC--CCCcCccccCCCcCceec---cCCCCccccC-----------CCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA--SDSIGGIWKSCSYNSTKL---QSHRSDYEFT-----------DFP 64 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~--~~~~GG~w~~~~~~~~~~---~~~~~~~~~~-----------~~~ 64 (511)
..+|++|||||.+||+||+++ .|.+|.++|- -.-.|-.|.. -+... ..|+.+|.-. .+.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGl---GGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGL---GGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCcccc---CceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 358999999999999999999 9999999983 2224444543 11111 2466665432 233
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeee-EEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEE
Q 010421 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNS-KVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY 143 (511)
Q Consensus 65 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 143 (511)
|.-.....-+....+.+-.++-.+..+.--.+.++. +|.-+..- +.+ -+..++...+.+ ++...+
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~Nsy----------geF---v~~h~I~at~~~-gk~~~~ 160 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSY----------GEF---VDPHKIKATNKK-GKERFL 160 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecc----------eee---cccceEEEecCC-CceEEe
Confidence 332211233445556666666665555421233322 33333321 001 223455555544 345578
Q ss_pred EeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCC
Q 010421 144 GFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGP 223 (511)
Q Consensus 144 ~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 223 (511)
.++.+||||| ..|++|+|| |...+ .+.|.+..++ .+...+-+|||+|..|.|.|..|+..+..
T Consensus 161 ta~~fvIatG---~RPrYp~Ip---G~~Ey---~ITSDDlFsl-------~~~PGkTLvVGa~YVaLECAgFL~gfg~~- 223 (503)
T KOG4716|consen 161 TAENFVIATG---LRPRYPDIP---GAKEY---GITSDDLFSL-------PYEPGKTLVVGAGYVALECAGFLKGFGYD- 223 (503)
T ss_pred ecceEEEEec---CCCCCCCCC---Cceee---eecccccccc-------cCCCCceEEEccceeeeehhhhHhhcCCC-
Confidence 9999999999 689999999 75433 4666766653 25567789999999999999999999876
Q ss_pred CCCcEEEEEecC
Q 010421 224 EGQPCTMIVRTT 235 (511)
Q Consensus 224 ~~~~Vtl~~R~~ 235 (511)
||+..|+-
T Consensus 224 ----vtVmVRSI 231 (503)
T KOG4716|consen 224 ----VTVMVRSI 231 (503)
T ss_pred ----cEEEEEEe
Confidence 99999973
No 83
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-16 Score=148.18 Aligned_cols=175 Identities=18% Similarity=0.210 Sum_probs=124.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||+||+|-+||.+. +|++.-++- +++||+-.. .+.+ -.|- +-.+..+.++..
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvld----T~~I------ENfI--------sv~~teGpkl~~ 270 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLD----TMGI------ENFI--------SVPETEGPKLAA 270 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeecc----ccch------hhee--------ccccccchHHHH
Confidence 58999999999999999998 888764442 237776443 0000 0111 223345778888
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
-|+.-.++|++ .+.--.+++.+.+... ..+...|+++++. .+.++.||+|||+. ++-
T Consensus 271 ale~Hv~~Y~v--Dimn~qra~~l~~a~~-------------~~~l~ev~l~nGa-----vLkaktvIlstGAr---WRn 327 (520)
T COG3634 271 ALEAHVKQYDV--DVMNLQRASKLEPAAV-------------EGGLIEVELANGA-----VLKARTVILATGAR---WRN 327 (520)
T ss_pred HHHHHHhhcCc--hhhhhhhhhcceecCC-------------CCccEEEEecCCc-----eeccceEEEecCcc---hhc
Confidence 89999999987 5555557777777421 1456788998886 78999999999965 344
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
-.+| |.+.|..+-+.-+..++ ...++||+|+|||||+||+|.|-.|+....+ ||++.=.+
T Consensus 328 ~nvP---GE~e~rnKGVayCPHCD------GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~h-----VtllEF~~ 387 (520)
T COG3634 328 MNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEH-----VTLLEFAP 387 (520)
T ss_pred CCCC---chHHHhhCCeeeCCCCC------CcccCCceEEEECCCcchHHHHHhHHhhhhe-----eeeeecch
Confidence 5567 77777655444344444 4579999999999999999999999987654 88875443
No 84
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.63 E-value=9.2e-14 Score=139.59 Aligned_cols=40 Identities=33% Similarity=0.371 Sum_probs=37.0
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+||||||||++||.+| .+++|+|||+.+.+||.+++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 46899999999999999987 68999999999999999887
No 85
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.59 E-value=9.3e-14 Score=131.14 Aligned_cols=170 Identities=18% Similarity=0.269 Sum_probs=107.1
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
.++|+|||+||||+++|..| .+++|.|+|+.+.+.|.-++.. .+..+.-..+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV------------------------APDHpEvKnv 75 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV------------------------APDHPEVKNV 75 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc------------------------CCCCcchhhH
Confidence 46899999999999999999 4589999999998888766511 1333333444
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
..-+...+++-.. .+..|.+|- . .|.+... +-.||.||+|.|+. .+
T Consensus 76 intFt~~aE~~rf--sf~gNv~vG---~---------------------dvsl~eL------~~~ydavvLaYGa~--~d 121 (468)
T KOG1800|consen 76 INTFTKTAEHERF--SFFGNVKVG---R---------------------DVSLKEL------TDNYDAVVLAYGAD--GD 121 (468)
T ss_pred HHHHHHHhhccce--EEEecceec---c---------------------cccHHHH------hhcccEEEEEecCC--CC
Confidence 4555556665332 222232321 0 1333332 45799999999985 68
Q ss_pred CCCCCCCCCCCCcccceEEeccccCc-----cchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC------------
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCK-----LDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG------------ 222 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~-----~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~------------ 222 (511)
+..+|| |.+. . .++.+..+.. ........++.+.+|+|||.|..|+|+|.-|......
T Consensus 122 R~L~IP---Ge~l-~-~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL 196 (468)
T KOG1800|consen 122 RRLDIP---GEEL-S-GVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLAL 196 (468)
T ss_pred cccCCC---Cccc-c-cceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHH
Confidence 888999 5441 1 1333332211 0000112346789999999999999999877643211
Q ss_pred -----CCCCcEEEEEecCc
Q 010421 223 -----PEGQPCTMIVRTTH 236 (511)
Q Consensus 223 -----~~~~~Vtl~~R~~~ 236 (511)
.+-+.|+++.|+..
T Consensus 197 ~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 197 NLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred hhhhcCCcceEEEEeccCc
Confidence 12466888888763
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.56 E-value=4.5e-14 Score=151.34 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
+.++|+|||||||||+||..| .|++|+|||+....|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 457999999999999999999 9999999999765444
No 87
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.53 E-value=5.2e-13 Score=136.76 Aligned_cols=287 Identities=17% Similarity=0.150 Sum_probs=166.5
Q ss_pred EEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 7 IAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 7 v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++|||+|++|+.+|..+ .+.+++++.+..... |..+ +.+..........+++..+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~-------~~~~--------------~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS-------YYRC--------------PLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC-------CCCC--------------ccchHHhcccCCHHHhccc
Confidence 58999999999999977 667888888765431 1110 1111100111111111111
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP 162 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p 162 (511)
.. ...+.++ .++.+++|++++.... .|.+.++ .+.+|++|+|||. .|..+
T Consensus 60 ~~-~~~~~~i--~~~~~~~v~~id~~~~------------------~v~~~~g------~~~yd~LvlatGa---~~~~~ 109 (415)
T COG0446 60 PR-FNRATGI--DVRTGTEVTSIDPENK------------------VVLLDDG------EIEYDYLVLATGA---RPRPP 109 (415)
T ss_pred ch-hHHhhCC--EEeeCCEEEEecCCCC------------------EEEECCC------cccccEEEEcCCC---cccCC
Confidence 11 1134455 7888899999987311 3555554 6889999999995 45554
Q ss_pred CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 163 AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 163 ~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
... .. ..+.....+...... .......++|+|+|+|..|+++|..+.+.+.+ |+++.+.+.+..+..
T Consensus 110 ~~~---~~----~~~~~~~~~~~~~~~-~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~-----v~l~e~~~~~~~~~~ 176 (415)
T COG0446 110 PIS---DW----EGVVTLRLREDAEAL-KGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKK-----VTLIEAADRLGGQLL 176 (415)
T ss_pred Ccc---cc----CceEEECCHHHHHHH-HHHHhccCeEEEECCcHHHHHHHHHHHHcCCe-----EEEEEcccccchhhh
Confidence 311 11 112222222221100 01111257999999999999999999999865 999999875321110
Q ss_pred ccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccccc
Q 010421 243 RIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIM 322 (511)
Q Consensus 243 ~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~ 322 (511)
. . .+
T Consensus 177 ~-----------~-----------------------------------------------------------------~~ 180 (415)
T COG0446 177 D-----------P-----------------------------------------------------------------EV 180 (415)
T ss_pred h-----------H-----------------------------------------------------------------HH
Confidence 0 0 00
Q ss_pred CCchhhhhccCeEEEEeCc-eeEEeCCc-------EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 323 PEGFFSEAEKGKIVFKRAS-KWWFWKGG-------LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 323 ~~~~~~~l~~g~v~v~~~~-i~~~~~~~-------v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
.+.+.+.+++.+|+++.+. +.+++.+. +...++..+++|.++.++|.+++..+.+.- ... .....+.+
T Consensus 181 ~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~---~~~-~~~~~g~i 256 (415)
T COG0446 181 AEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA---LPG-LALAGGAV 256 (415)
T ss_pred HHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhC---ccc-eeccCCCE
Confidence 0111123344446666554 56666543 577888999999999999999985443211 100 11233345
Q ss_pred cceeeecCCCCCceEEEeeccc-----------chhhhhHHHHHHHHHHHhcCC
Q 010421 395 PLYRGTIHPLIPNMAFVGYIES-----------VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.+...+.....+++|.+|.... ...+..+..|++.++..+.+.
T Consensus 257 ~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 257 LVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred EEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 5665554335899999996322 122356888888888888753
No 88
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.52 E-value=2e-13 Score=143.10 Aligned_cols=158 Identities=25% Similarity=0.312 Sum_probs=103.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++|+|||+||+||+||.+| .|+.|+|+||.+++||...+ ..|++.+ ...+.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y-gipnmkl------------------------dk~vv 1838 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY-GIPNMKL------------------------DKFVV 1838 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee-cCCccch------------------------hHHHH
Confidence 357999999999999999999 99999999999999999887 5555544 12244
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.-.+...+-|+ .+..|+++-.- |.+... .-..|.||+|+|+. .|+
T Consensus 1839 ~rrv~ll~~egi--~f~tn~eigk~------------------------vs~d~l------~~~~daiv~a~gst--~pr 1884 (2142)
T KOG0399|consen 1839 QRRVDLLEQEGI--RFVTNTEIGKH------------------------VSLDEL------KKENDAIVLATGST--TPR 1884 (2142)
T ss_pred HHHHHHHHhhCc--eEEeecccccc------------------------ccHHHH------hhccCeEEEEeCCC--CCc
Confidence 444455555666 55555444211 221111 34589999999985 788
Q ss_pred CCCCCCCCCCCc----ccceEEeccccCccch--hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC
Q 010421 161 IPAFPNNKGPEV----FEGQVLHSIDYCKLDK--EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 161 ~p~~~~~~g~~~----~~g~~~hs~~~~~~~~--~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
-..+| |-+. |.-..+|...-.-++. +..-...+||+|+|||||.+|-|....-.+++.+
T Consensus 1885 dlpv~---grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1885 DLPVP---GRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred CCCCC---CccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence 77788 5432 2222333321110100 0001235899999999999999988777777653
No 89
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.50 E-value=9.3e-14 Score=140.57 Aligned_cols=162 Identities=27% Similarity=0.353 Sum_probs=113.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+||||||+||++|..| .|++|+++|+.+.+||...+ .. +.|.-..++.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y-GI------------------------P~~kl~k~i~d 177 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY-GI------------------------PDFKLPKDILD 177 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe-cC------------------------chhhccchHHH
Confidence 47999999999999999999 99999999999999998766 22 23333456677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
....+.++.++ .++.+++|-. .++++.. ...+|.|++|||.. .|+.
T Consensus 178 ~~i~~l~~~Gv--~~~~~~~vG~------------------------~it~~~L------~~e~Dav~l~~G~~--~~~~ 223 (457)
T COG0493 178 RRLELLERSGV--EFKLNVRVGR------------------------DITLEEL------LKEYDAVFLATGAG--KPRP 223 (457)
T ss_pred HHHHHHHHcCe--EEEEcceECC------------------------cCCHHHH------HHhhCEEEEecccc--CCCC
Confidence 77777888886 7787776631 1222222 23569999999984 7888
Q ss_pred CCCCCCCCCCcccceEEeccccCccch-h-------hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDK-E-------AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~-~-------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
.++| |.+. ..+..+.+|..... . ......++|+|+|||+|.||+|++....+.+.. +|+.+.|
T Consensus 224 l~i~---g~d~--~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~----~v~~~~~ 294 (457)
T COG0493 224 LDIP---GEDA--KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAK----SVTCFYR 294 (457)
T ss_pred CCCC---CcCC--CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCe----EEEEecc
Confidence 8888 5431 12333333321100 0 001223569999999999999999888887753 6888864
No 90
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.37 E-value=5.9e-12 Score=110.14 Aligned_cols=126 Identities=25% Similarity=0.342 Sum_probs=93.4
Q ss_pred EEECCCHHHHHHHHhc--c-----CCCcEEEcCCCCc-CccccCCCcCceeccCCCCccccC-CCC---CCC--------
Q 010421 8 AIIGAGVSGLAAVKQL--R-----HHNPVVFEASDSI-GGIWKSCSYNSTKLQSHRSDYEFT-DFP---WPN-------- 67 (511)
Q Consensus 8 ~IIGaG~aGl~aa~~l--~-----g~~v~v~e~~~~~-GG~w~~~~~~~~~~~~~~~~~~~~-~~~---~~~-------- 67 (511)
+|||+|++|++++.+| . ..+|+|||++... |+.|.....+...+|++...|+.. +-| |.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999 3 4579999996553 467877447778899998888753 322 111
Q ss_pred ----CCCCCCCChHHHHHHHHHHHHhcC--CCC--c-eEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCC
Q 010421 68 ----RDDPGFPSYTEILDYLESYAKHFD--VFK--C-VRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSN 138 (511)
Q Consensus 68 ----~~~~~~~~~~~~~~yl~~~~~~~~--~~~--~-i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 138 (511)
.....|+++..+.+||+++.+.+- +.. . .+...+|++|+.. ++.|.|.+.++.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~----------------~~~~~v~~~~g~-- 142 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRD----------------DDGYRVVTADGQ-- 142 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEc----------------CCcEEEEECCCC--
Confidence 113578999999999998887642 111 2 2346789999884 455888887775
Q ss_pred ceeEEEeCEEEEeecc
Q 010421 139 SIQRYGFEFLVVCTGK 154 (511)
Q Consensus 139 ~~~~~~~d~vVlAtG~ 154 (511)
.+.||+||+|||+
T Consensus 143 ---~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 143 ---SIRADAVVLATGH 155 (156)
T ss_pred ---EEEeCEEEECCCC
Confidence 7899999999996
No 91
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.29 E-value=1.1e-10 Score=113.90 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=36.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++++|||||++||+||..| .|++++++|+++.+||....
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 46899999999999999999 99999999999999997543
No 92
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.28 E-value=4.8e-11 Score=113.93 Aligned_cols=250 Identities=17% Similarity=0.231 Sum_probs=142.6
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccC---------CCCCCCCC--
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT---------DFPWPNRD-- 69 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-- 69 (511)
...+|||+|.+..+++... .+.+|.++...... |.++-..++.+.-+. +-+|....
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepel---------PYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRs 249 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL---------PYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERS 249 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccC---------cccCCCcchhceecCCCChhhheeecccCCccce
Confidence 4579999999998888877 56678887765543 222222222222111 11111100
Q ss_pred -----CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 70 -----DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 70 -----~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
...|.+.+++-. +.+=|+ .+..+.+|+.|+-.+ -.|.++++. ++.
T Consensus 250 iffepd~FfvspeDLp~-----~~nGGv--Avl~G~kvvkid~~d------------------~~V~LnDG~-----~I~ 299 (659)
T KOG1346|consen 250 IFFEPDGFFVSPEDLPK-----AVNGGV--AVLRGRKVVKIDEED------------------KKVILNDGT-----TIG 299 (659)
T ss_pred eEecCCcceeChhHCcc-----cccCce--EEEeccceEEeeccc------------------CeEEecCCc-----Eee
Confidence 133444443321 112233 455677888877531 158888876 899
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCccc-ceEEec-cccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC
Q 010421 145 FEFLVVCTGKYGDVPIIPAFPNNKGPEVFE-GQVLHS-IDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~-g~~~hs-~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
||+++|||| ..|+..+.-...+.+.-. -.++|. .+|+.+. .....-++|.|||+|..|-|+|..|.+...+
T Consensus 300 YdkcLIATG---~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rle----k~~aek~siTIiGnGflgSELacsl~rk~r~ 372 (659)
T KOG1346|consen 300 YDKCLIATG---VRPKKLQVFEEASEEVKQKITYFRYPADFKRLE----KGLAEKQSITIIGNGFLGSELACSLKRKYRN 372 (659)
T ss_pred hhheeeecC---cCcccchhhhhcCHHhhhheeEEecchHHHHHH----HhhhhcceEEEEcCcchhhhHHHHHHHhhhc
Confidence 999999999 456554322111222111 123332 3444322 1112337899999999999999999987542
Q ss_pred CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccC
Q 010421 223 PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKY 302 (511)
Q Consensus 223 ~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
++.+|+.+.... -|+... +..|+.
T Consensus 373 -~g~eV~QvF~Ek-----------~nm~ki------------------------------------LPeyls-------- 396 (659)
T KOG1346|consen 373 -EGVEVHQVFEEK-----------YNMEKI------------------------------------LPEYLS-------- 396 (659)
T ss_pred -cCcEEEEeeccc-----------CChhhh------------------------------------hHHHHH--------
Confidence 234455543321 111111 111111
Q ss_pred CCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCc--EEEcCCceeeccEEEEecCCCCcccccc
Q 010421 303 GLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGG--LEFEDNTKLEADVVILCTGYDGKKKLKA 377 (511)
Q Consensus 303 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~ 377 (511)
.--.+.+++++|.|+.+. |.++. .+. +.++||.++..|+||.|+|-.||..+..
T Consensus 397 ---------------------~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 397 ---------------------QWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred ---------------------HHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 001256788888888876 44432 223 5678999999999999999999987654
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.23 E-value=2.3e-11 Score=117.26 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=95.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC--------ccccCC---CcCceeccCC---CCcc----ccC-
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG--------GIWKSC---SYNSTKLQSH---RSDY----EFT- 61 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G--------G~w~~~---~~~~~~~~~~---~~~~----~~~- 61 (511)
+.+||+|||||||||.||..+ .|.+|+|||+.+.+| |.++.. .+..+..+.| +.++ .|.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 468999999999999999999 899999999999886 334331 1222333344 2111 111
Q ss_pred ----------CCCCCC-CCCCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 62 ----------DFPWPN-RDDPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 62 ----------~~~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
+.++.. .....|| ....+.+-|..-+++.++ .++.+++|.+++.. +..
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~----------------~~~ 143 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKD----------------DSG 143 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEec----------------Cce
Confidence 011111 1124455 367788888888888999 99999999999983 456
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+.|.+.++. ++.||.||+|||..| .|.+
T Consensus 144 f~l~t~~g~-----~i~~d~lilAtGG~S-~P~l 171 (408)
T COG2081 144 FRLDTSSGE-----TVKCDSLILATGGKS-WPKL 171 (408)
T ss_pred EEEEcCCCC-----EEEccEEEEecCCcC-CCCC
Confidence 788887775 799999999999873 5644
No 94
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.18 E-value=4.1e-10 Score=101.50 Aligned_cols=162 Identities=22% Similarity=0.303 Sum_probs=98.8
Q ss_pred eEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
+.+|||||+||.+||.+| +..+|+++..++-+ .....-..+.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v---------------------------------ksvtn~~~i~~ 47 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV---------------------------------KSVTNYQKIGQ 47 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH---------------------------------HHHhhHHHHHH
Confidence 368999999999999999 66789998886443 11223345555
Q ss_pred HHHHHHHhcCCCCc------eEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKC------VRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~------i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
|++ +|++.+. -.|.+-+.++... + +....+.++++. .+.|++|++|||
T Consensus 48 yle----kfdv~eq~~~elg~~f~~~~~~v~~~------~---------s~ehci~t~~g~-----~~ky~kKOG~tg-- 101 (334)
T KOG2755|consen 48 YLE----KFDVKEQNCHELGPDFRRFLNDVVTW------D---------SSEHCIHTQNGE-----KLKYFKLCLCTG-- 101 (334)
T ss_pred HHH----hcCccccchhhhcccHHHHHHhhhhh------c---------cccceEEecCCc-----eeeEEEEEEecC--
Confidence 554 3333210 1122112222211 0 333467888876 899999999999
Q ss_pred CCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 156 GDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 156 ~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..|..- .. |.+ ..++-..+-.+.. .......+.|+|+|+|.|-++.|.+.++... .|+|....+
T Consensus 102 -~kPklq-~E---~~n---~~Iv~irDtDsaQ-llq~kl~kaK~VlilgnGgia~El~yElk~~-------nv~w~ikd~ 165 (334)
T KOG2755|consen 102 -YKPKLQ-VE---GIN---PKIVGIRDTDSAQ-LLQCKLVKAKIVLILGNGGIAMELTYELKIL-------NVTWKIKDE 165 (334)
T ss_pred -CCccee-ec---CCC---ceEEEEecCcHHH-HHHHHHhhcceEEEEecCchhHHHHHHhhcc-------eeEEEecch
Confidence 456543 12 212 1344433332211 1113456889999999999999999999754 388888854
Q ss_pred ceeecCcc
Q 010421 236 HWTVPHYR 243 (511)
Q Consensus 236 ~~~~p~~~ 243 (511)
|+...+.
T Consensus 166 -~IsaTFf 172 (334)
T KOG2755|consen 166 -GISATFF 172 (334)
T ss_pred -hhhhccc
Confidence 4555443
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.14 E-value=1.9e-10 Score=115.74 Aligned_cols=133 Identities=22% Similarity=0.331 Sum_probs=72.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC--------ccccCC----CcCceecc---CCCCcc----ccC--
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG--------GIWKSC----SYNSTKLQ---SHRSDY----EFT-- 61 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G--------G~w~~~----~~~~~~~~---~~~~~~----~~~-- 61 (511)
|||+|||||+|||.||..+ .|.+|+|+||++.+| |.++.. .+...... .+..+. .|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 6899999999999999999 999999999999886 333320 01111111 111110 010
Q ss_pred ---------CCCCC-CCCCCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 62 ---------DFPWP-NRDDPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 62 ---------~~~~~-~~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
..+.. +.....|| ...++.+-|...+++.++ .++++++|.+++.. +++.|
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~---------------~~~~f 143 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKK---------------EDGVF 143 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEE---------------TTEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeec---------------CCcee
Confidence 01111 00012233 467788888888888998 99999999999873 14457
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.|.+++.. .+.||.||+|||..| .|.
T Consensus 144 ~v~~~~~~-----~~~a~~vILAtGG~S-~p~ 169 (409)
T PF03486_consen 144 GVKTKNGG-----EYEADAVILATGGKS-YPK 169 (409)
T ss_dssp EEEETTTE-----EEEESEEEE----SS-SGG
T ss_pred EeeccCcc-----cccCCEEEEecCCCC-ccc
Confidence 78773332 899999999999873 454
No 96
>PRK06847 hypothetical protein; Provisional
Probab=99.12 E-value=1.1e-09 Score=110.68 Aligned_cols=132 Identities=18% Similarity=0.220 Sum_probs=86.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc----ccC-C-------------------CcCceeccCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI----WKS-C-------------------SYNSTKLQSH 54 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~----w~~-~-------------------~~~~~~~~~~ 54 (511)
|.+.+||+|||||++|+++|..| .|++|+|+|+++.+... ... + ......+..+
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 77889999999999999999999 89999999997653211 000 0 0000111001
Q ss_pred CCccccCCCCCCC----C-CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 55 RSDYEFTDFPWPN----R-DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 55 ~~~~~~~~~~~~~----~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
... .+..++.+. . .......+.++.+++.+.+++.++ .++++++|++++.. ++.+.
T Consensus 81 ~g~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~~~~ 141 (375)
T PRK06847 81 DGT-LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQD----------------DDGVT 141 (375)
T ss_pred CCC-EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEc----------------CCEEE
Confidence 000 000111110 0 012234678888999998888887 89999999999873 34567
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
|.+.++. ++.+|.||.|+|.+|
T Consensus 142 v~~~~g~-----~~~ad~vI~AdG~~s 163 (375)
T PRK06847 142 VTFSDGT-----TGRYDLVVGADGLYS 163 (375)
T ss_pred EEEcCCC-----EEEcCEEEECcCCCc
Confidence 7766554 789999999999875
No 97
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.10 E-value=7e-11 Score=108.32 Aligned_cols=151 Identities=28% Similarity=0.360 Sum_probs=83.2
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH--H
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL--D 81 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 81 (511)
||+|||||+||+.||.+| .+.+++|+|+.+..... .. ..+.... . ........+. +
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~-~~~~~~~-------~-----------~~~~~~~~~~~~~ 60 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SG-CIPSPLL-------V-----------EIAPHRHEFLPAR 60 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HS-HHHHHHH-------H-----------HHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-cc-ccccccc-------c-----------ccccccccccccc
Confidence 799999999999999999 89999999887543210 00 0000000 0 0000000111 0
Q ss_pred --HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 82 --YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 82 --yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+.+..+..++ .++++++|.+++..... + ....+.+..... +...++.||+||+|||. .|
T Consensus 61 ~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~--------~---~~~~~~~~~~~~--~~~~~~~~d~lviAtG~---~~ 122 (201)
T PF07992_consen 61 LFKLVDQLKNRGV--EIRLNAKVVSIDPESKR--------V---VCPAVTIQVVET--GDGREIKYDYLVIATGS---RP 122 (201)
T ss_dssp HGHHHHHHHHHTH--EEEHHHTEEEEEESTTE--------E---EETCEEEEEEET--TTEEEEEEEEEEEESTE---EE
T ss_pred ccccccccccceE--EEeeccccccccccccc--------c---ccCcccceeecc--CCceEecCCeeeecCcc---cc
Confidence 22222244555 66788999999873110 0 001123322222 23348999999999994 57
Q ss_pred CCCCCCCCCCCC--cccceEEeccccCccchhhhhhccCCCcEEEEC
Q 010421 160 IIPAFPNNKGPE--VFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVG 204 (511)
Q Consensus 160 ~~p~~~~~~g~~--~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG 204 (511)
+.|.+| |.+ .+...+.++..+.. .....++|+|||
T Consensus 123 ~~~~i~---g~~~~~~~~~~~~~~~~~~-------~~~~~~~v~VvG 159 (201)
T PF07992_consen 123 RTPNIP---GEEVAYFLRGVDDAQRFLE-------LLESPKRVAVVG 159 (201)
T ss_dssp EEESST---TTTTECBTTSEEHHHHHHT-------HSSTTSEEEEES
T ss_pred ceeecC---CCccccccccccccccccc-------cccccccccccc
Confidence 777888 542 12123444444433 223345999999
No 98
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.01 E-value=2.1e-09 Score=101.83 Aligned_cols=136 Identities=22% Similarity=0.181 Sum_probs=84.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc-ccCC-CcCceeccCC-CCccccCCCCCCCCCC-CCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI-WKSC-SYNSTKLQSH-RSDYEFTDFPWPNRDD-PGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~-w~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 77 (511)
.+||+||||||+|++||..| .|++|+|+|++..+||. |... .++...+..+ ...+.-...++..... .....+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 47999999999999999999 89999999999888763 4321 1222111110 0011111122221101 1224567
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEe------CCCCceeEEEeCEEEE
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQT------HNSNSIQRYGFEFLVV 150 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~------~~~~~~~~~~~d~vVl 150 (511)
++...|...+.+.+. .++++++|+++...+ +++ +-+.+.. +......++.++.||+
T Consensus 105 ~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~~~---------------~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 105 EAAAKLAAAAIDAGA--KIFNGVSVEDVILRE---------------DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred HHHHHHHHHHHHcCC--EEEcCceeceeeEeC---------------CCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 777888888888888 899999999987631 211 2222221 1111234789999999
Q ss_pred eecccC
Q 010421 151 CTGKYG 156 (511)
Q Consensus 151 AtG~~~ 156 (511)
|||+.+
T Consensus 168 ATG~~a 173 (257)
T PRK04176 168 ATGHDA 173 (257)
T ss_pred EeCCCc
Confidence 999874
No 99
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.00 E-value=6.1e-09 Score=105.71 Aligned_cols=132 Identities=15% Similarity=0.185 Sum_probs=82.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-CC---cCccccCC--------------CcCceeccCCCCccccCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-DS---IGGIWKSC--------------SYNSTKLQSHRSDYEFTDFP 64 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~~---~GG~w~~~--------------~~~~~~~~~~~~~~~~~~~~ 64 (511)
+||+||||||+|+++|..| .|++|+|+|++ .. .||..... .+.+..+..|.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 6999999999999999999 89999999997 22 22221111 11112222222110001111
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC---CCCcee
Q 010421 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH---NSNSIQ 141 (511)
Q Consensus 65 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~ 141 (511)
.+... .....+..+.++|.+.+.+.+. .++. ++|+++... ++.+.|++.++ .+++..
T Consensus 81 ~~~~~-~~~~~r~~fd~~L~~~a~~~G~--~v~~-~~v~~v~~~----------------~~~~~v~~~~~~~~~~~~~~ 140 (388)
T TIGR02023 81 SEDGY-VGMVRREVFDSYLRERAQKAGA--ELIH-GLFLKLERD----------------RDGVTLTYRTPKKGAGGEKG 140 (388)
T ss_pred CCCCc-eEeeeHHHHHHHHHHHHHhCCC--EEEe-eEEEEEEEc----------------CCeEEEEEEeccccCCCcce
Confidence 11100 1126788899999999888887 6654 468888762 45677877652 122334
Q ss_pred EEEeCEEEEeecccC
Q 010421 142 RYGFEFLVVCTGKYG 156 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~ 156 (511)
++.+|.||.|+|.+|
T Consensus 141 ~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 141 SVEADVVIGADGANS 155 (388)
T ss_pred EEEeCEEEECCCCCc
Confidence 789999999999875
No 100
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.98 E-value=3.7e-09 Score=103.01 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=83.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCC----------cCceec-cCCCCccccC------CCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCS----------YNSTKL-QSHRSDYEFT------DFPW 65 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~----------~~~~~~-~~~~~~~~~~------~~~~ 65 (511)
+||+|||||++|+++|..| .|++|+|+|+...++..+.... .++... ........+. ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 5899999999999999999 8999999999887655333210 000000 0000000000 1111
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 66 PNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 66 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
+.. ......+.++.+.+.+.+.+.+. .+.++++|+++... ++.+++.+.++ + .++.+
T Consensus 81 ~~~-~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~----------------~~~~~~~~~~~--~--~~~~a 137 (295)
T TIGR02032 81 ETE-LAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIH----------------DDRVVVIVRGG--E--GTVTA 137 (295)
T ss_pred CCC-cEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEe----------------CCEEEEEEcCc--c--EEEEe
Confidence 111 12235678888999988888887 89999999998873 33445554432 1 26899
Q ss_pred CEEEEeecccC
Q 010421 146 EFLVVCTGKYG 156 (511)
Q Consensus 146 d~vVlAtG~~~ 156 (511)
|.||+|+|.++
T Consensus 138 ~~vv~a~G~~s 148 (295)
T TIGR02032 138 KIVIGADGSRS 148 (295)
T ss_pred CEEEECCCcch
Confidence 99999999864
No 101
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.96 E-value=2.1e-09 Score=97.71 Aligned_cols=122 Identities=25% Similarity=0.423 Sum_probs=80.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCC----------------------------
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSH---------------------------- 54 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~---------------------------- 54 (511)
.+|+|||+|++|++||..| .|.+|+||||+..+||.....+.++...+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 3799999999999999999 9999999999999999776644444333221
Q ss_pred CCccccCCCCCCC-CCCCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 55 RSDYEFTDFPWPN-RDDPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
...++|.+-..+. .....|. .-..+.+|| +. ++ .|.++++|+.+.+. ++.|++
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L---At--dL--~V~~~~rVt~v~~~----------------~~~W~l 138 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL---AT--DL--TVVLETRVTEVART----------------DNDWTL 138 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHH---hc--cc--hhhhhhhhhhheec----------------CCeeEE
Confidence 1222232211111 0001122 222333332 22 34 78999999999984 678999
Q ss_pred EEEeCCCCceeEEEeCEEEEeec
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+.+++.+ ...+|.||||.=
T Consensus 139 ~~~~g~~----~~~~d~vvla~P 157 (331)
T COG3380 139 HTDDGTR----HTQFDDVVLAIP 157 (331)
T ss_pred EecCCCc----ccccceEEEecC
Confidence 9977642 578999999875
No 102
>PRK06834 hypothetical protein; Provisional
Probab=98.95 E-value=1.1e-08 Score=106.58 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=82.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC-------ccccC--------CCcCcee-----ccCCC---Cc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG-------GIWKS--------CSYNSTK-----LQSHR---SD 57 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G-------G~w~~--------~~~~~~~-----~~~~~---~~ 57 (511)
..+||+||||||+|+++|..| .|++|+|+|+.+... +.+.. ..++.+. ..... ..
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 358999999999999999999 999999999976431 11111 0000000 00000 00
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC
Q 010421 58 YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS 137 (511)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (511)
+.+...+.... .........+.+.|.+.+++.++ .++++++|++++.. ++.+.|++.++.
T Consensus 82 ~~~~~~~~~~~-~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~----------------~~~v~v~~~~g~- 141 (488)
T PRK06834 82 LDISDFPTRHN-YGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQD----------------DTGVDVELSDGR- 141 (488)
T ss_pred cccccCCCCCC-ccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEc----------------CCeEEEEECCCC-
Confidence 11111111100 01223456777888888888887 89999999999873 345666654432
Q ss_pred CceeEEEeCEEEEeecccC
Q 010421 138 NSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~ 156 (511)
++.+|+||.|.|.+|
T Consensus 142 ----~i~a~~vVgADG~~S 156 (488)
T PRK06834 142 ----TLRAQYLVGCDGGRS 156 (488)
T ss_pred ----EEEeCEEEEecCCCC
Confidence 789999999999886
No 103
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.95 E-value=9.1e-09 Score=105.52 Aligned_cols=133 Identities=13% Similarity=0.065 Sum_probs=83.1
Q ss_pred CC-CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc------ccCC----CcCceeccCC-------------
Q 010421 1 MA-NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI------WKSC----SYNSTKLQSH------------- 54 (511)
Q Consensus 1 m~-~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~------w~~~----~~~~~~~~~~------------- 54 (511)
|+ ..+||+||||||+|++||..| .|++|+|+||.+.+|.. .... .+|.+....|
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 80 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFM 80 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEE
Confidence 54 358999999999999999999 89999999998776532 1110 1111110001
Q ss_pred --CCcc--ccCCCCCCC-CCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 55 --RSDY--EFTDFPWPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 55 --~~~~--~~~~~~~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
.... .+....... ........+.++.++|.+.+++.+. .++.+++|+++... ++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~----------------~g~v~ 142 (428)
T PRK10157 81 TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQR----------------DGKVV 142 (428)
T ss_pred cCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEe----------------CCEEE
Confidence 0000 111000000 0001224678888999999988888 88999999998862 33333
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+...++. ++.+|.||+|+|..+
T Consensus 143 ~v~~~g~-----~i~A~~VI~A~G~~s 164 (428)
T PRK10157 143 GVEADGD-----VIEAKTVILADGVNS 164 (428)
T ss_pred EEEcCCc-----EEECCEEEEEeCCCH
Confidence 3222332 789999999999763
No 104
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.95 E-value=6.4e-09 Score=105.77 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=81.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC----c-------cccC--------CCcCceec--cCCCC---
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG----G-------IWKS--------CSYNSTKL--QSHRS--- 56 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G----G-------~w~~--------~~~~~~~~--~~~~~--- 56 (511)
..+||+|||||++|+++|..| .|++|+|+|+.+... + .+.. ..++.+.- ..+..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 458999999999999999999 899999999976431 1 0000 00111000 00000
Q ss_pred --------ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 57 --------DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 57 --------~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
...|...............+..+.+.|.+.+++.++ .+.++++|++++.. ++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~----------------~~~v 146 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQD----------------ADRV 146 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEec----------------CCeE
Confidence 011111000000001123456777777777777787 88999999999873 4456
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+|++.++. ++.+|.||.|+|..|
T Consensus 147 ~v~~~~g~-----~~~a~~vV~AdG~~S 169 (392)
T PRK08773 147 RLRLDDGR-----RLEAALAIAADGAAS 169 (392)
T ss_pred EEEECCCC-----EEEeCEEEEecCCCc
Confidence 77665543 789999999999874
No 105
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.95 E-value=5.8e-09 Score=105.96 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=80.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc------------------cccC-----CCcCceeccCCCC-
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG------------------IWKS-----CSYNSTKLQSHRS- 56 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG------------------~w~~-----~~~~~~~~~~~~~- 56 (511)
+.+||+|||||++|+++|..| .|++|+|+|+.+..+. .|.. ..+..+.+..+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 347999999999999999999 8999999999765421 1111 0011111111110
Q ss_pred c-----cccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 57 D-----YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 57 ~-----~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
. ..|..................+.+.+.+.+.+++. ..+++++|++++.. ++.|.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~--~~~~~~~v~~i~~~----------------~~~~~v~ 147 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPN--ITRFGDEAESVRPR----------------EDEVTVT 147 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCC--cEEECCeeEEEEEc----------------CCeEEEE
Confidence 0 00110000000001124566777777777766653 34889999999873 4567777
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++++. ++.+|.||.|+|..|
T Consensus 148 ~~~g~-----~~~a~~vI~AdG~~S 167 (388)
T PRK07494 148 LADGT-----TLSARLVVGADGRNS 167 (388)
T ss_pred ECCCC-----EEEEeEEEEecCCCc
Confidence 76543 789999999999875
No 106
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.94 E-value=4.6e-09 Score=99.16 Aligned_cols=137 Identities=20% Similarity=0.174 Sum_probs=85.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC-ccccCC-CcCceeccCCC-CccccCCCCCCCCCC-CCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG-GIWKSC-SYNSTKLQSHR-SDYEFTDFPWPNRDD-PGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G-G~w~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 77 (511)
.+||+||||||+|+++|..| .|++|+|+||+..+| |.|... .++.+.+..+. ..+.....++..... .....+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 47999999999999999999 899999999999886 455431 23322222111 111111223221110 1123567
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCC-CceEEEEEe------CCCCceeEEEeCEEEE
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGH-PVWEVAVQT------HNSNSIQRYGFEFLVV 150 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~------~~~~~~~~~~~d~vVl 150 (511)
++...|...+.+.+. .+.++++|+++...++ . ...-|.+.. +......++.++.||.
T Consensus 101 el~~~L~~~a~e~GV--~I~~~t~V~dli~~~~--------------~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd 164 (254)
T TIGR00292 101 EFISTLASKALQAGA--KIFNGTSVEDLITRDD--------------TVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD 164 (254)
T ss_pred HHHHHHHHHHHHcCC--EEECCcEEEEEEEeCC--------------CCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence 888888888888887 8899999999887311 1 011122211 1111234789999999
Q ss_pred eecccC
Q 010421 151 CTGKYG 156 (511)
Q Consensus 151 AtG~~~ 156 (511)
|||+.+
T Consensus 165 ATG~~a 170 (254)
T TIGR00292 165 ATGHDA 170 (254)
T ss_pred eecCCc
Confidence 999763
No 107
>PRK08244 hypothetical protein; Provisional
Probab=98.94 E-value=1.3e-08 Score=106.71 Aligned_cols=132 Identities=19% Similarity=0.186 Sum_probs=82.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc------ccC------------------CCcCceeccCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI------WKS------------------CSYNSTKLQSHRSD 57 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~------w~~------------------~~~~~~~~~~~~~~ 57 (511)
.+||+||||||+|+++|..| .|++|+|+|+.+...-. +.. ..++..........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 47999999999999999999 99999999997654210 000 00111110000000
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC
Q 010421 58 YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS 137 (511)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (511)
..+...+.+.. .........+.+.|.+.+++.++ .++++++|++++.. ++..++++++.+
T Consensus 82 ~~~~~~~~~~~-~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~~v~v~~~~~~- 141 (493)
T PRK08244 82 LDFSALDTSSN-YTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQD----------------GDGVEVVVRGPD- 141 (493)
T ss_pred CCcccCCCCCC-cEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEc----------------CCeEEEEEEeCC-
Confidence 11111110000 01223566778888888888887 79999999999873 344566665432
Q ss_pred CceeEEEeCEEEEeecccC
Q 010421 138 NSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~ 156 (511)
+ ..++.+|+||.|.|..|
T Consensus 142 g-~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 142 G-LRTLTSSYVVGADGAGS 159 (493)
T ss_pred c-cEEEEeCEEEECCCCCh
Confidence 2 23789999999999875
No 108
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.93 E-value=7.5e-09 Score=106.15 Aligned_cols=135 Identities=15% Similarity=0.177 Sum_probs=79.1
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-----CccccC--C---------CcCceec-cCCCC------
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-----GGIWKS--C---------SYNSTKL-QSHRS------ 56 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-----GG~w~~--~---------~~~~~~~-~~~~~------ 56 (511)
+..+||+|||||++|+++|..| .|++|+|+|+++.. |..... + ..+.+.- ..+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 95 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSD 95 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEe
Confidence 3458999999999999999999 89999999998754 211110 0 0000000 00100
Q ss_pred -----ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 57 -----DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 57 -----~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
...+..................+.+.|.+.+... ++ .++++++|++++.. ++.+.|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~v~~~----------------~~~~~v 157 (415)
T PRK07364 96 ADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI--TWLCPAEVVSVEYQ----------------QDAATV 157 (415)
T ss_pred CCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEec----------------CCeeEE
Confidence 1111111010000001122345666666666554 45 68889999999862 445677
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccC
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.+++ ...++.+|.||.|.|.+|
T Consensus 158 ~~~~~~--~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 158 TLEIEG--KQQTLQSKLVVAADGARS 181 (415)
T ss_pred EEccCC--cceEEeeeEEEEeCCCCc
Confidence 776432 223689999999999885
No 109
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.93 E-value=3.7e-09 Score=105.80 Aligned_cols=134 Identities=18% Similarity=0.150 Sum_probs=84.0
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-----C-----------------C--cC--ceeccCC-C
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-----C-----------------S--YN--STKLQSH-R 55 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-----~-----------------~--~~--~~~~~~~-~ 55 (511)
+||+|||||++|+++|..| .|++|+|||+++........ + . .. ....... .
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 6999999999999999999 89999999998765211110 0 0 00 0000000 0
Q ss_pred Cc-------cccCCCCCCCC-CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 56 SD-------YEFTDFPWPNR-DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 56 ~~-------~~~~~~~~~~~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
.. ....++..... .......+.++.+.|.+.++..++ .++++++|++++.. .+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d----------------~~~ 143 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQD----------------DDG 143 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEE----------------TTE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeeccccccc----------------ccc
Confidence 00 00000000000 011224578899999999998887 89999999998873 344
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++.+.+..+++.+++++|.||.|.|.+|
T Consensus 144 ~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 144 VTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp EEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred cccccccccCCceeEEEEeeeecccCccc
Confidence 56777777666667899999999999886
No 110
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.92 E-value=9.5e-09 Score=104.41 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=81.2
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCc----eec-----cCCCCccccC--CCCCCCCCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNS----TKL-----QSHRSDYEFT--DFPWPNRDDPG 72 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~----~~~-----~~~~~~~~~~--~~~~~~~~~~~ 72 (511)
||+|||||++|+++|..| .|++|+|+|+++.+|+......++. +.+ +.-...+.+. ...........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 799999999999999999 8999999999888876432211111 100 0000111111 11100000011
Q ss_pred CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 73 FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 73 ~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
...+..+.+++.+.+.+.++ .+ +.++|+.+... +++.|.|++.++. ++.+|.||.|+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv--~~-~~~~v~~i~~~---------------~~~~~~v~~~~g~-----~~~a~~VI~A~ 137 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGV--LW-LERKAIHAEAD---------------GVALSTVYCAGGQ-----RIQARLVIDAR 137 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCc--EE-EccEEEEEEec---------------CCceeEEEeCCCC-----EEEeCEEEECC
Confidence 25678888999888887776 44 46688888762 1456777776553 78999999999
Q ss_pred ccc
Q 010421 153 GKY 155 (511)
Q Consensus 153 G~~ 155 (511)
|..
T Consensus 138 G~~ 140 (388)
T TIGR01790 138 GFG 140 (388)
T ss_pred CCc
Confidence 976
No 111
>PRK08013 oxidoreductase; Provisional
Probab=98.91 E-value=1.1e-08 Score=104.39 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=81.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---c----------------------cccC------CCcC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---G----------------------IWKS------CSYN 47 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G----------------------~w~~------~~~~ 47 (511)
|+ .+||+||||||+|+++|..| .|++|+|+|+.+.+. | .|.. ..+.
T Consensus 1 m~-~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~ 79 (400)
T PRK08013 1 MQ-SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH 79 (400)
T ss_pred CC-cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence 53 58999999999999999999 899999999977532 1 0100 0001
Q ss_pred ceeccCCC--CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCC
Q 010421 48 STKLQSHR--SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124 (511)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 124 (511)
++.+..+. ....+...............+..+.+.|.+.+... ++ .++++++|++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~---------------- 141 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI--TLLAPAELQQVAWG---------------- 141 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEec----------------
Confidence 11111010 00111100000000011245667777777777665 46 78999999999873
Q ss_pred CCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 125 ~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.++|++.++. ++.+|.||-|.|.+|
T Consensus 142 ~~~v~v~~~~g~-----~i~a~lvVgADG~~S 168 (400)
T PRK08013 142 ENEAFLTLKDGS-----MLTARLVVGADGANS 168 (400)
T ss_pred CCeEEEEEcCCC-----EEEeeEEEEeCCCCc
Confidence 334567766553 799999999999886
No 112
>PLN02463 lycopene beta cyclase
Probab=98.90 E-value=1e-08 Score=104.74 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=80.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-----CccccCCCcCceec------cCCCCccccCC-CCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-----GGIWKSCSYNSTKL------QSHRSDYEFTD-FPWPNRD 69 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-----GG~w~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~ 69 (511)
.+||+||||||||+++|..| .|++|+|+|+++.. .|.|.. .+..+.+ ..+.....+.+ .......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~-~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVD-EFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHH-HHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 47999999999999999999 89999999997542 233322 1100000 00111111110 0000000
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEE
Q 010421 70 DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLV 149 (511)
Q Consensus 70 ~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 149 (511)
......+.++.+++.+.+...++ .+. .++|++++.. ++.+.|+++++. ++.+|.||
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~----------------~~~~~V~~~dG~-----~i~A~lVI 162 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHE----------------ESKSLVVCDDGV-----KIQASLVL 162 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEc----------------CCeEEEEECCCC-----EEEcCEEE
Confidence 11224678888888888877776 453 5789998873 445678777654 79999999
Q ss_pred EeecccC
Q 010421 150 VCTGKYG 156 (511)
Q Consensus 150 lAtG~~~ 156 (511)
.|+|..+
T Consensus 163 ~AdG~~s 169 (447)
T PLN02463 163 DATGFSR 169 (447)
T ss_pred ECcCCCc
Confidence 9999864
No 113
>PRK06184 hypothetical protein; Provisional
Probab=98.89 E-value=2.5e-08 Score=104.69 Aligned_cols=134 Identities=17% Similarity=0.160 Sum_probs=82.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc------cccC------------------CCcCceeccCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG------IWKS------------------CSYNSTKLQSHRS 56 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG------~w~~------------------~~~~~~~~~~~~~ 56 (511)
..+||+||||||+||++|..| .|++|+|+|+.+.+.. .+.. ..++......+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 357999999999999999999 9999999999875521 1100 0111111111001
Q ss_pred cc-c--cCC-C-CCCC-CC-CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 57 DY-E--FTD-F-PWPN-RD-DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 57 ~~-~--~~~-~-~~~~-~~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
.. . +.. . +.+. .. .....+...+.+.|.+.+.+.++ .++++++|++++.. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~----------------~~~v~ 143 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQD----------------ADGVT 143 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEc----------------CCcEE
Confidence 00 0 000 0 0000 00 01123455667777777777777 89999999999873 34466
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++.+.+++ .++.+|+||.|+|.+|
T Consensus 144 v~~~~~~~~--~~i~a~~vVgADG~~S 168 (502)
T PRK06184 144 ARVAGPAGE--ETVRARYLVGADGGRS 168 (502)
T ss_pred EEEEeCCCe--EEEEeCEEEECCCCch
Confidence 666543322 3789999999999986
No 114
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.89 E-value=2.6e-08 Score=101.25 Aligned_cols=135 Identities=11% Similarity=0.135 Sum_probs=81.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC------------------CcCceeccCCCCcc-ccCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC------------------SYNSTKLQSHRSDY-EFTDF 63 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~------------------~~~~~~~~~~~~~~-~~~~~ 63 (511)
+||+||||||+|++||..| .|++|+|+|+....+..+... ...+..+..|.... .+. .
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~-~ 79 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIG-R 79 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEec-c
Confidence 4899999999999999999 899999999976543222110 11111111221110 001 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC----CCc
Q 010421 64 PWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN----SNS 139 (511)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~ 139 (511)
..+....-....+..+.++|.+.+.+.|. .++.+ ++.++....+ .++.+.|++...+ .++
T Consensus 80 ~~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~-~~~~i~~~~~-------------~~~~~~v~~~~~~~~~~~g~ 143 (398)
T TIGR02028 80 TLKEHEYIGMLRREVLDSFLRRRAADAGA--TLING-LVTKLSLPAD-------------ADDPYTLHYISSDSGGPSGT 143 (398)
T ss_pred CCCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcc-eEEEEEeccC-------------CCceEEEEEeeccccccCCC
Confidence 11110001125788889999999998888 67655 4777654211 1455677654321 123
Q ss_pred eeEEEeCEEEEeecccC
Q 010421 140 IQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~ 156 (511)
..++.+|.||.|+|..|
T Consensus 144 ~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 144 RCTLEVDAVIGADGANS 160 (398)
T ss_pred ccEEEeCEEEECCCcch
Confidence 34789999999999875
No 115
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.89 E-value=1e-08 Score=104.42 Aligned_cols=133 Identities=22% Similarity=0.217 Sum_probs=82.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc------ccC--------CCcCcee-ccCCCCccccCC-
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI------WKS--------CSYNSTK-LQSHRSDYEFTD- 62 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~------w~~--------~~~~~~~-~~~~~~~~~~~~- 62 (511)
|.+..||+|||||++|+++|..| .|++|+|+||.+.++.. +.. ...+.+. ...+...+.+.+
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 80 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDA 80 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeC
Confidence 77788999999999999999999 89999999998765421 000 0000000 000001111100
Q ss_pred --------CCCCC----CC--CCCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 63 --------FPWPN----RD--DPGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 63 --------~~~~~----~~--~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
.+... .. ......+.++.+.|.+.+.+.+ + .++++++|++++.. ++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~~~~~~~v~~i~~~----------------~~~ 142 (396)
T PRK08163 81 VDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLV--EFRTSTHVVGIEQD----------------GDG 142 (396)
T ss_pred CCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCc--EEEeCCEEEEEecC----------------CCc
Confidence 01110 00 0012356677777777666554 5 68889999999862 345
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.|++.++. ++.+|.||.|.|..|
T Consensus 143 v~v~~~~g~-----~~~ad~vV~AdG~~S 166 (396)
T PRK08163 143 VTVFDQQGN-----RWTGDALIGCDGVKS 166 (396)
T ss_pred eEEEEcCCC-----EEecCEEEECCCcCh
Confidence 667665543 789999999999875
No 116
>PRK06753 hypothetical protein; Provisional
Probab=98.88 E-value=1.7e-08 Score=102.05 Aligned_cols=125 Identities=20% Similarity=0.272 Sum_probs=78.3
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc---ccC--C-------------------CcCceeccCCCCccc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI---WKS--C-------------------SYNSTKLQSHRSDYE 59 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~---w~~--~-------------------~~~~~~~~~~~~~~~ 59 (511)
+|+|||||++|+++|..| .|++|+|+|+++.+.-. ... + ..+......+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 799999999999999999 99999999998765311 000 0 0011111111100 0
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCc
Q 010421 60 FTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS 139 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (511)
+...++..........+..+.+.|.+.++. . .++++++|++++.. ++.++|+++++.
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~----------------~~~v~v~~~~g~--- 137 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENE----------------TDKVTIHFADGE--- 137 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEec----------------CCcEEEEECCCC---
Confidence 111111111011234667777777665542 2 68999999999862 456777776654
Q ss_pred eeEEEeCEEEEeecccC
Q 010421 140 IQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~ 156 (511)
++.+|.||.|.|.+|
T Consensus 138 --~~~~~~vigadG~~S 152 (373)
T PRK06753 138 --SEAFDLCIGADGIHS 152 (373)
T ss_pred --EEecCEEEECCCcch
Confidence 789999999999875
No 117
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.87 E-value=3.7e-08 Score=104.32 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=84.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC------------------------CcCceeccCCCC-
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC------------------------SYNSTKLQSHRS- 56 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~------------------------~~~~~~~~~~~~- 56 (511)
.+||+||||||+|+++|..| .|++|+|+|+...+....... ...+........
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 57999999999999999999 899999999987654221110 011111111110
Q ss_pred -ccccCCCCCCC--CC-CCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 57 -DYEFTDFPWPN--RD-DPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 57 -~~~~~~~~~~~--~~-~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
...+.. +... .+ ........++.++|.+.+.++ ++ .++++++|++++.. ++.++|+
T Consensus 90 ~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~----------------~~~v~v~ 150 (538)
T PRK06183 90 CLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQD----------------DDGVTVT 150 (538)
T ss_pred EEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEc----------------CCeEEEE
Confidence 111110 1000 00 012234566777887777665 66 79999999999873 3456777
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++. +++..++.+|+||.|.|.+|
T Consensus 151 ~~~~-~G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 151 LTDA-DGQRETVRARYVVGCDGANS 174 (538)
T ss_pred EEcC-CCCEEEEEEEEEEecCCCch
Confidence 7643 23345799999999999986
No 118
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.86 E-value=1.6e-08 Score=102.87 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=85.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-C---------CcCcee--ccC--CCCccccCC----
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-C---------SYNSTK--LQS--HRSDYEFTD---- 62 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~---------~~~~~~--~~~--~~~~~~~~~---- 62 (511)
+.+||+||||||||++||..| .|++|+|+|+.+.+|.--.. . ..+... +.. ....+.+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 468999999999999999999 88999999999888742111 0 011110 000 000000110
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 63 FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
+..+.. ......+..+.++|...+++.+. .+..+++|..+... ++.+.+.+..++ .+
T Consensus 82 ~~~~~~-~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~----------------~~~~~~~~~~~~----~e 138 (396)
T COG0644 82 IEVPVG-EGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIRE----------------DDGVVVGVRAGD----DE 138 (396)
T ss_pred EecCCC-ceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEe----------------CCcEEEEEEcCC----EE
Confidence 000000 12224578888899999999998 89999999999984 333444444442 38
Q ss_pred EEeCEEEEeecccC
Q 010421 143 YGFEFLVVCTGKYG 156 (511)
Q Consensus 143 ~~~d~vVlAtG~~~ 156 (511)
+.++.||.|+|..+
T Consensus 139 ~~a~~vI~AdG~~s 152 (396)
T COG0644 139 VRAKVVIDADGVNS 152 (396)
T ss_pred EEcCEEEECCCcch
Confidence 99999999999764
No 119
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.86 E-value=1.8e-08 Score=102.93 Aligned_cols=130 Identities=14% Similarity=0.181 Sum_probs=78.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-------------CccccCC---------CcCceec--cCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-------------GGIWKSC---------SYNSTKL--QSHRSD 57 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-------------GG~w~~~---------~~~~~~~--~~~~~~ 57 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+.. ++....+ .++.+.- ..+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 47999999999999999999 89999999997621 1100000 0111100 011111
Q ss_pred cccCC------CCCCC---C--CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC
Q 010421 58 YEFTD------FPWPN---R--DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP 126 (511)
Q Consensus 58 ~~~~~------~~~~~---~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 126 (511)
+.+.+ ..+.. . ..........+.+-|.+.+++.++ .++++++|++++.. ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~ 143 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRS----------------GD 143 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEc----------------CC
Confidence 11100 00100 0 001123345566566565666666 78899999999873 44
Q ss_pred ceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 127 VWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 127 ~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.|.|++.++. ++.+|.||.|+|.+|
T Consensus 144 ~v~v~~~~g~-----~~~a~~vVgAdG~~S 168 (405)
T PRK05714 144 DWLLTLADGR-----QLRAPLVVAADGANS 168 (405)
T ss_pred eEEEEECCCC-----EEEeCEEEEecCCCc
Confidence 5777776553 789999999999875
No 120
>PRK09126 hypothetical protein; Provisional
Probab=98.84 E-value=3.1e-08 Score=100.83 Aligned_cols=131 Identities=16% Similarity=0.126 Sum_probs=76.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc--------Ccc---ccC--------CCcCceec--cCCCCc--
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI--------GGI---WKS--------CSYNSTKL--QSHRSD-- 57 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~--------GG~---w~~--------~~~~~~~~--~~~~~~-- 57 (511)
+.+||+||||||+|+++|..| .|++|+|+|+.+.. |.. +.. ..+..+.. ..+...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 368999999999999999999 89999999997652 211 100 00000000 001000
Q ss_pred ---------cccCCCCCCCCCCCCCCChHHHHHHHHHHH-HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 58 ---------YEFTDFPWPNRDDPGFPSYTEILDYLESYA-KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 58 ---------~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
+.+..............+...+.+.+.+.+ +..++ .++++++|++++.. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~----------------~~~ 143 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTD----------------DDG 143 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEc----------------CCe
Confidence 111100000000011123444555444444 33466 79999999999863 445
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.|+++++. ++.+|.||.|+|.+|
T Consensus 144 ~~v~~~~g~-----~~~a~~vI~AdG~~S 167 (392)
T PRK09126 144 AQVTLANGR-----RLTARLLVAADSRFS 167 (392)
T ss_pred EEEEEcCCC-----EEEeCEEEEeCCCCc
Confidence 677776553 789999999999875
No 121
>PRK06126 hypothetical protein; Provisional
Probab=98.83 E-value=6.8e-08 Score=102.57 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=83.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-----C---CcCceec-------cCC-----------
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-----C---SYNSTKL-------QSH----------- 54 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-----~---~~~~~~~-------~~~----------- 54 (511)
..++|+|||||++|+++|..| .|++|+|+|+.+...-.-.. + .+..+.+ -.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~ 85 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT 85 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence 347999999999999999999 99999999998653211000 0 0000000 000
Q ss_pred ----CCccc--cCCCC----C--------CCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCccc
Q 010421 55 ----RSDYE--FTDFP----W--------PNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTD 115 (511)
Q Consensus 55 ----~~~~~--~~~~~----~--------~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~ 115 (511)
..... +.... . .........+...+...|.+.+++. ++ .++++++|++++..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~------- 156 (545)
T PRK06126 86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQD------- 156 (545)
T ss_pred cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEEC-------
Confidence 00000 00000 0 0000012235566777777777654 56 79999999999873
Q ss_pred CCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 116 SGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 116 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.+++++.+..+++..++.+|+||.|+|.+|
T Consensus 157 ---------~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 157 ---------ADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred ---------CCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 34466777665555556789999999999986
No 122
>PRK07190 hypothetical protein; Provisional
Probab=98.82 E-value=5.3e-08 Score=101.27 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=81.6
Q ss_pred CCC-CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-C-------------cC-----ceecc-----C
Q 010421 1 MAN-YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-S-------------YN-----STKLQ-----S 53 (511)
Q Consensus 1 m~~-~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~-------------~~-----~~~~~-----~ 53 (511)
|++ .+||+||||||+||++|..| .|++|+|+|+.+.+...-... . +. +..+. .
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA 80 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence 543 47999999999999999999 899999999987653111100 0 00 00000 0
Q ss_pred CCCccc--cCCCC-CCCC-C-CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 54 HRSDYE--FTDFP-WPNR-D-DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 54 ~~~~~~--~~~~~-~~~~-~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
...... +..+. .+.. . .....+...+.+.|.+.+++.++ .++++++|++++.. ++.+
T Consensus 81 ~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv--~v~~~~~v~~l~~~----------------~~~v 142 (487)
T PRK07190 81 NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA--AVKRNTSVVNIELN----------------QAGC 142 (487)
T ss_pred CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEc----------------CCee
Confidence 000000 00000 0000 0 01123456677778877888888 89999999999873 3345
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.+.+.+++ ++.+++||.|+|..|
T Consensus 143 ~v~~~~g~-----~v~a~~vVgADG~~S 165 (487)
T PRK07190 143 LTTLSNGE-----RIQSRYVIGADGSRS 165 (487)
T ss_pred EEEECCCc-----EEEeCEEEECCCCCH
Confidence 55554432 789999999999875
No 123
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.82 E-value=3.4e-08 Score=100.90 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=80.5
Q ss_pred CeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCcc---------------------ccC-----CCcCceeccCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGI---------------------WKS-----CSYNSTKLQSH 54 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~---------------------w~~-----~~~~~~~~~~~ 54 (511)
+||+|||||++|+++|..| . |++|+|+|+.+..... |.. .....+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 7999999999999999999 5 4999999997642100 000 00000000000
Q ss_pred C-------CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 55 R-------SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 55 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
. ..+.+.....+.........+.++.+.|.+.+.+.++ .++++++|++++.. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~~ 143 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETR----------------DEG 143 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEc----------------CCE
Confidence 0 0011110000000001134678888888888888787 89999999999873 445
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.|++.++. ++.+|.||.|+|..|
T Consensus 144 v~v~~~~g~-----~~~ad~vI~AdG~~S 167 (403)
T PRK07333 144 VTVTLSDGS-----VLEARLLVAADGARS 167 (403)
T ss_pred EEEEECCCC-----EEEeCEEEEcCCCCh
Confidence 667765543 789999999999774
No 124
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.82 E-value=2.6e-08 Score=101.10 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=79.6
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC--------ccccC--C---------CcCcee-----------ccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG--------GIWKS--C---------SYNSTK-----------LQS 53 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G--------G~w~~--~---------~~~~~~-----------~~~ 53 (511)
||+|||||++|+++|..| .|++|+|+|+...++ ..... + .++.+. ...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 699999999999999999 899999999987542 11110 0 000000 000
Q ss_pred CC--CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 54 HR--SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 54 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
.. ..+.+...............+.++.+.|.+.+.+.+ . .++++++|++++.. ++.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~----------------~~~~~v 142 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRH----------------SDHVEL 142 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEec----------------CCeeEE
Confidence 00 001111000000000122456777777777777766 6 78999999999873 455667
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccC
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++++. ++.+|.||.|.|..|
T Consensus 143 ~~~~g~-----~~~~~~vi~adG~~S 163 (385)
T TIGR01988 143 TLDDGQ-----QLRARLLVGADGANS 163 (385)
T ss_pred EECCCC-----EEEeeEEEEeCCCCC
Confidence 666553 689999999999875
No 125
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.81 E-value=7.4e-08 Score=102.27 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=82.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-----C---------CcCce----------e-ccCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-----C---------SYNST----------K-LQSHR 55 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-----~---------~~~~~----------~-~~~~~ 55 (511)
..+||+||||||+|+++|..| .|++|+|+|+++.+...... + ....+ . .....
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 457999999999999999999 89999999998765322110 0 00000 0 00001
Q ss_pred CccccCCCCCC-CCCC-CCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEE
Q 010421 56 SDYEFTDFPWP-NRDD-PGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAV 132 (511)
Q Consensus 56 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (511)
....+...+.. .... ........+.++|.+.+.+. ++ .++++++|++++.. ++.+++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v--~v~~~~~v~~i~~~----------------~~~v~v~~ 163 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI--DLRWKNKVTGLEQH----------------DDGVTLTV 163 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEEc----------------CCEEEEEE
Confidence 11111111100 0000 11135667778888877765 45 79999999999873 44566666
Q ss_pred EeCCCCceeEEEeCEEEEeecccC
Q 010421 133 QTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 133 ~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.++ ..++.+|+||.|+|.+|
T Consensus 164 ~~~~g--~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 164 ETPDG--PYTLEADWVIACDGARS 185 (547)
T ss_pred ECCCC--cEEEEeCEEEECCCCCc
Confidence 54322 23689999999999875
No 126
>PRK10015 oxidoreductase; Provisional
Probab=98.81 E-value=3.8e-08 Score=100.83 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=82.1
Q ss_pred CCC-CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc------cccCC----CcCceeccCC------CCccccC
Q 010421 1 MAN-YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG------IWKSC----SYNSTKLQSH------RSDYEFT 61 (511)
Q Consensus 1 m~~-~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG------~w~~~----~~~~~~~~~~------~~~~~~~ 61 (511)
|+. .+||+||||||+|++||..| .|++|+|+||.+.+|. ..... ..|++....| ...+.+.
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 80 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL 80 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEE
Confidence 543 48999999999999999999 8999999999876542 11110 1222110000 0111110
Q ss_pred C------CCCCCC------CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 62 D------FPWPNR------DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 62 ~------~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
+ .++... .......+..+.++|.+.+++.+. .++.+++|+.+... ++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv--~i~~~~~V~~i~~~----------------~~~v~ 142 (429)
T PRK10015 81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA--QFIPGVRVDALVRE----------------GNKVT 142 (429)
T ss_pred eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCC--EEECCcEEEEEEEe----------------CCEEE
Confidence 0 011100 001223577888889888888888 88899999998762 33343
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
....++. ++.+|.||+|+|..+
T Consensus 143 ~v~~~~~-----~i~A~~VI~AdG~~s 164 (429)
T PRK10015 143 GVQAGDD-----ILEANVVILADGVNS 164 (429)
T ss_pred EEEeCCe-----EEECCEEEEccCcch
Confidence 2222221 789999999999764
No 127
>PRK06185 hypothetical protein; Provisional
Probab=98.80 E-value=4.2e-08 Score=100.35 Aligned_cols=135 Identities=17% Similarity=0.243 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-----CccccCC---------CcC-----------ceeccCC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-----GGIWKSC---------SYN-----------STKLQSH 54 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-----GG~w~~~---------~~~-----------~~~~~~~ 54 (511)
.+.+||+|||||++|+++|..| .|++|+|+|+.+.. |..+... .++ .+.....
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 3568999999999999999999 99999999997543 2111110 001 1111001
Q ss_pred CC---ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 55 RS---DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 55 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
.. ...|...+.+.. ...+.....+.++|.+.+.+. ++ .+.++++|+++.... +....|
T Consensus 84 ~~~~~~~~~~~~~~~~~-~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~---------------~~v~~v 145 (407)
T PRK06185 84 GRTVTLADFSRLPTPYP-YIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG---------------GRVTGV 145 (407)
T ss_pred CeEEEecchhhcCCCCC-cEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC---------------CEEEEE
Confidence 10 011111111111 122345677888887777665 56 788899999998731 222234
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccC
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.+...+ + ..++.+|.||.|+|.+|
T Consensus 146 ~~~~~~-g-~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 146 RARTPD-G-PGEIRADLVVGADGRHS 169 (407)
T ss_pred EEEcCC-C-cEEEEeCEEEECCCCch
Confidence 444322 2 13689999999999875
No 128
>PRK07588 hypothetical protein; Provisional
Probab=98.80 E-value=3.9e-08 Score=99.97 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=77.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccC--C-------------------CcCceeccCCCC--
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKS--C-------------------SYNSTKLQSHRS-- 56 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~--~-------------------~~~~~~~~~~~~-- 56 (511)
.||+|||||++|+++|..| .|++|+|+|+.+... ..+.. + ....+.+.....
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 3899999999999999999 899999999976542 11211 0 001111110100
Q ss_pred ccccCCCCCCCCCC--CCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe
Q 010421 57 DYEFTDFPWPNRDD--PGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT 134 (511)
Q Consensus 57 ~~~~~~~~~~~~~~--~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 134 (511)
...++...+..... .....+.++.+.|.+.... ++ .++++++|++++.. ++.++|++++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v--~i~~~~~v~~i~~~----------------~~~v~v~~~~ 141 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QV--ETIFDDSIATIDEH----------------RDGVRVTFER 141 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-Ce--EEEeCCEEeEEEEC----------------CCeEEEEECC
Confidence 01111000110000 1123456666666554332 44 79999999999873 4567787776
Q ss_pred CCCCceeEEEeCEEEEeecccC
Q 010421 135 HNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 135 ~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+. ++.+|.||.|.|..|
T Consensus 142 g~-----~~~~d~vIgADG~~S 158 (391)
T PRK07588 142 GT-----PRDFDLVIGADGLHS 158 (391)
T ss_pred CC-----EEEeCEEEECCCCCc
Confidence 54 678999999999876
No 129
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.80 E-value=4.5e-08 Score=99.45 Aligned_cols=130 Identities=8% Similarity=0.066 Sum_probs=79.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccCC----------------CcCceec--cCCCCccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKSC----------------SYNSTKL--QSHRSDYE 59 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~~----------------~~~~~~~--~~~~~~~~ 59 (511)
+.+||+|||||++|+++|..| .|++|+|+|+..... ..|... ....+.. ..+...+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 468999999999999999999 899999999987652 222210 0000000 00111111
Q ss_pred cCC-----CCCC---CCCC--CCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 60 FTD-----FPWP---NRDD--PGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 60 ~~~-----~~~~---~~~~--~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
+.+ ..+. ...+ .....+..+.+.|.+.+++.+ + .+. +++|++++.. ++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~~~-~~~v~~i~~~----------------~~~~ 144 (388)
T PRK07608 84 VFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNL--TWF-PARAQGLEVD----------------PDAA 144 (388)
T ss_pred EEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCc--EEE-cceeEEEEec----------------CCeE
Confidence 100 0000 0000 011346677777877777765 4 455 8899998762 4456
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.|++.++. ++.+|.||.|+|..|
T Consensus 145 ~v~~~~g~-----~~~a~~vI~adG~~S 167 (388)
T PRK07608 145 TLTLADGQ-----VLRADLVVGADGAHS 167 (388)
T ss_pred EEEECCCC-----EEEeeEEEEeCCCCc
Confidence 77766553 789999999999875
No 130
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.79 E-value=5.7e-08 Score=97.86 Aligned_cols=120 Identities=15% Similarity=0.190 Sum_probs=80.4
Q ss_pred eEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCc--Cc--cccCC-------------CcCceeccCCCCccccCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSI--GG--IWKSC-------------SYNSTKLQSHRSDYEFTDFP 64 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~--GG--~w~~~-------------~~~~~~~~~~~~~~~~~~~~ 64 (511)
||+|||||+||+++|.+| .|.+|+|+|++... .. +|... .|++..+..+........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~-- 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID-- 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcc--
Confidence 799999999999999999 78899999998776 22 23320 111111111111111110
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 65 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
.......+..+.+++...+...+ .+.++++|++|+.. ++.+.|.+.++. ++.
T Consensus 79 ----~~Y~~i~~~~f~~~l~~~~~~~~---~~~~~~~V~~i~~~----------------~~~~~v~~~~g~-----~i~ 130 (374)
T PF05834_consen 79 ----YPYCMIDRADFYEFLLERAAAGG---VIRLNARVTSIEET----------------GDGVLVVLADGR-----TIR 130 (374)
T ss_pred ----cceEEEEHHHHHHHHHHHhhhCC---eEEEccEEEEEEec----------------CceEEEEECCCC-----EEE
Confidence 01223578888888888877333 47889999999973 335667777765 899
Q ss_pred eCEEEEeeccc
Q 010421 145 FEFLVVCTGKY 155 (511)
Q Consensus 145 ~d~vVlAtG~~ 155 (511)
++.||-|+|..
T Consensus 131 a~~VvDa~g~~ 141 (374)
T PF05834_consen 131 ARVVVDARGPS 141 (374)
T ss_pred eeEEEECCCcc
Confidence 99999999954
No 131
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.79 E-value=4.1e-08 Score=100.34 Aligned_cols=133 Identities=16% Similarity=0.159 Sum_probs=76.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-CC--cCc--------cccC--------CCcCceec--cCCCCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-DS--IGG--------IWKS--------CSYNSTKL--QSHRSD 57 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~~--~GG--------~w~~--------~~~~~~~~--~~~~~~ 57 (511)
|+..+||+|||||++|+++|..| .|++|+|+|+. .. ++. .... ..++.+.- ..+...
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 80 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIA 80 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccE
Confidence 44578999999999999999999 89999999996 21 111 0000 00111100 001111
Q ss_pred cc-----------cCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCC
Q 010421 58 YE-----------FTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGH 125 (511)
Q Consensus 58 ~~-----------~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 125 (511)
+. |..................+.+.|.+.+... ++ .++++++|++++.. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v--~v~~~~~v~~i~~~----------------~ 142 (405)
T PRK08850 81 MEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNV--TLLMPARCQSIAVG----------------E 142 (405)
T ss_pred EEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCe--EEEcCCeeEEEEee----------------C
Confidence 11 1110000000001122445555555555443 45 68889999999863 3
Q ss_pred CceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 126 PVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 126 ~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.+.|++.+++ ++.+|.||.|.|.+|
T Consensus 143 ~~~~v~~~~g~-----~~~a~lvIgADG~~S 168 (405)
T PRK08850 143 SEAWLTLDNGQ-----ALTAKLVVGADGANS 168 (405)
T ss_pred CeEEEEECCCC-----EEEeCEEEEeCCCCC
Confidence 44567776554 799999999999875
No 132
>PRK07236 hypothetical protein; Provisional
Probab=98.78 E-value=3.4e-08 Score=100.25 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=74.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc----Cccc--cCC---------CcCceeccCCCCccccC---C
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI----GGIW--KSC---------SYNSTKLQSHRSDYEFT---D 62 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~----GG~w--~~~---------~~~~~~~~~~~~~~~~~---~ 62 (511)
+.++|+|||||++|+++|..| .|++|+|+|+.+.. |+.- ..+ ..+......+.....+. +
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 357999999999999999999 89999999997642 2110 000 00000000011111110 0
Q ss_pred CCCCCC-CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 63 FPWPNR-DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 63 ~~~~~~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
...... ..........+.+.|. +.+.. ..++++++|++++.. ++.++|+++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~---~~~~~-~~i~~~~~v~~i~~~----------------~~~v~v~~~~g~----- 139 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALR---AAFPA-ERYHLGETLVGFEQD----------------GDRVTARFADGR----- 139 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHH---HhCCC-cEEEcCCEEEEEEec----------------CCeEEEEECCCC-----
Confidence 000000 0011123344444333 33321 258999999999873 445777777654
Q ss_pred EEEeCEEEEeecccC
Q 010421 142 RYGFEFLVVCTGKYG 156 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~ 156 (511)
++.+|.||.|.|.+|
T Consensus 140 ~~~ad~vIgADG~~S 154 (386)
T PRK07236 140 RETADLLVGADGGRS 154 (386)
T ss_pred EEEeCEEEECCCCCc
Confidence 789999999999886
No 133
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.77 E-value=5.1e-08 Score=99.17 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=79.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc----Cc---------------------cccCC------CcCce
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI----GG---------------------IWKSC------SYNST 49 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~----GG---------------------~w~~~------~~~~~ 49 (511)
+.+||+|||||++|+++|..| .|++|+|+|+.+.. ++ .|..- .+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 457999999999999999999 89999999997521 11 11100 00000
Q ss_pred ec-cCCCCccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 50 KL-QSHRSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 50 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
.. ........+...............+..+.+.|.+.++.. ++ .++++++|++++.. ++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~----------------~~~ 145 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNV--TLRCPASLQALQRD----------------DDG 145 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCc--EEEcCCeeEEEEEc----------------CCe
Confidence 00 000000111100000000011234566777777666655 66 68889999998862 445
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
|.|++.++. ++.+|.||.|+|..|
T Consensus 146 ~~v~~~~g~-----~~~a~~vI~AdG~~S 169 (391)
T PRK08020 146 WELTLADGE-----EIQAKLVIGADGANS 169 (391)
T ss_pred EEEEECCCC-----EEEeCEEEEeCCCCc
Confidence 777776553 789999999999875
No 134
>PRK07045 putative monooxygenase; Reviewed
Probab=98.77 E-value=9.5e-08 Score=97.05 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=79.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc---Ccc---ccCC--------CcCceecc--CCCCccc-cC--
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI---GGI---WKSC--------SYNSTKLQ--SHRSDYE-FT-- 61 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~---GG~---w~~~--------~~~~~~~~--~~~~~~~-~~-- 61 (511)
+.+||+||||||+|+++|..| .|++|+|+|+.+.+ ++. +... ..+.+.-. .+...+. +.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 567999999999999999999 99999999998764 111 1100 00000000 0000000 00
Q ss_pred ----CCCCCCCC-CC--CCCChHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEE
Q 010421 62 ----DFPWPNRD-DP--GFPSYTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAV 132 (511)
Q Consensus 62 ----~~~~~~~~-~~--~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~ 132 (511)
.++++... .. ....+.++.+.|.+.++. -++ .++++++|++++... ++ .+.|++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~---------------~~~~~~v~~ 146 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDA---------------DGTVTSVTL 146 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECC---------------CCcEEEEEe
Confidence 01111100 01 113456677776666543 345 799999999998731 23 345666
Q ss_pred EeCCCCceeEEEeCEEEEeecccC
Q 010421 133 QTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 133 ~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++. ++.+|.||.|.|.+|
T Consensus 147 ~~g~-----~~~~~~vIgADG~~S 165 (388)
T PRK07045 147 SDGE-----RVAPTVLVGADGARS 165 (388)
T ss_pred CCCC-----EEECCEEEECCCCCh
Confidence 5543 789999999999886
No 135
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.76 E-value=6.8e-08 Score=97.97 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=83.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-CCc---C--ccccCC--------------------CcCceeccCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-DSI---G--GIWKSC--------------------SYNSTKLQSHR 55 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~~~---G--G~w~~~--------------------~~~~~~~~~~~ 55 (511)
.+||+|||||++|+++|..| .|++|+|+|+. ..+ | .....+ .+....+....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 57999999999999999999 99999999997 221 1 000000 00001111111
Q ss_pred -CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEE
Q 010421 56 -SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQ 133 (511)
Q Consensus 56 -~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (511)
....|.................++.+-|.+.+...+ + .++++++|+.++.. ++..++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~----------------~~~v~v~l~ 143 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQD----------------GDGVTVTLS 143 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEc----------------CCceEEEEc
Confidence 112222222221111233467788888888887765 6 78999999999983 344567777
Q ss_pred -eCCCCceeEEEeCEEEEeecccC
Q 010421 134 -THNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 134 -~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++. ++.||.||-|.|.+|
T Consensus 144 ~dG~-----~~~a~llVgADG~~S 162 (387)
T COG0654 144 FDGE-----TLDADLLVGADGANS 162 (387)
T ss_pred CCCc-----EEecCEEEECCCCch
Confidence 443 899999999999886
No 136
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.75 E-value=9e-08 Score=97.05 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC--c--Ccc--------ccC--------CCcCceec--cCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS--I--GGI--------WKS--------CSYNSTKL--QSHRS 56 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~--~--GG~--------w~~--------~~~~~~~~--~~~~~ 56 (511)
|+ .+||+|||||++|+++|..| .|++|+|||+.+. . .|. +.. ..++.+.- ..+..
T Consensus 1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 64 47999999999999999999 8999999998641 1 110 100 01111110 00100
Q ss_pred cc----------ccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCC
Q 010421 57 DY----------EFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGH 125 (511)
Q Consensus 57 ~~----------~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 125 (511)
.+ .|...............+..+..-|.+.++.. ++ .++++++|++++.. +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i--~i~~~~~v~~~~~~----------------~ 141 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNL--TLMCPEKLADLEFS----------------A 141 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCe--EEECCCceeEEEEc----------------C
Confidence 00 01100000000001122334444444444443 45 78899999999873 3
Q ss_pred CceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 126 PVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 126 ~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++|+++++. ++.+|.||.|+|.+|
T Consensus 142 ~~~~v~~~~g~-----~~~~~lvIgADG~~S 167 (384)
T PRK08849 142 EGNRVTLESGA-----EIEAKWVIGADGANS 167 (384)
T ss_pred CeEEEEECCCC-----EEEeeEEEEecCCCc
Confidence 44677776654 899999999999875
No 137
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.73 E-value=1.4e-07 Score=96.91 Aligned_cols=137 Identities=12% Similarity=0.168 Sum_probs=81.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC----cCccccCCC--------------cCceeccCCCCc-cccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS----IGGIWKSCS--------------YNSTKLQSHRSD-YEFT 61 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~----~GG~w~~~~--------------~~~~~~~~~~~~-~~~~ 61 (511)
+.+||+||||||+|+++|..| .|++|+|+|+... .||...... ..++++..|... ..+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 358999999999999999999 8999999998753 233111100 111111111111 1111
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC----C
Q 010421 62 DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN----S 137 (511)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~ 137 (511)
.. ......-....+..+.++|.+.+.+.|. .++.+ ++++++...+ .++.+.|++.+.. +
T Consensus 118 ~~-~~~~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~~-~v~~i~~~~~-------------~~~~~~v~~~~~~~~~~~ 180 (450)
T PLN00093 118 KT-LKPHEYIGMVRREVLDSFLRERAQSNGA--TLING-LFTRIDVPKD-------------PNGPYVIHYTSYDSGSGA 180 (450)
T ss_pred cc-CCCCCeEEEecHHHHHHHHHHHHHHCCC--EEEec-eEEEEEeccC-------------CCCcEEEEEEeccccccC
Confidence 00 0000000125788899999999988887 66544 5777764211 1355677765421 1
Q ss_pred CceeEEEeCEEEEeecccC
Q 010421 138 NSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~ 156 (511)
++..++.+|.||.|+|..|
T Consensus 181 g~~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 181 GTPKTLEVDAVIGADGANS 199 (450)
T ss_pred CCccEEEeCEEEEcCCcch
Confidence 2234789999999999875
No 138
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.73 E-value=7.9e-08 Score=97.91 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=76.0
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--c---CCCcEEEcCCCCc-----C------ccccC--------CCcCceec-cCCCC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--R---HHNPVVFEASDSI-----G------GIWKS--------CSYNSTKL-QSHRS 56 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~---g~~v~v~e~~~~~-----G------G~w~~--------~~~~~~~~-~~~~~ 56 (511)
++.+||+|||||++|+++|..| . |++|+|+|+.... + +.+.. ..++.+.- ..+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 1458999999999999999999 5 9999999995211 1 01100 00111000 00000
Q ss_pred ccc-----------cCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCC
Q 010421 57 DYE-----------FTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124 (511)
Q Consensus 57 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 124 (511)
.+. +...............+..+.+.|.+.+... +. .++++++|+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~---------------- 142 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERT---------------- 142 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEc----------------
Confidence 000 0000000000011133455666666655443 45 78889999999862
Q ss_pred CCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 125 ~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.|.|++.++. .+.+|.||.|+|..|
T Consensus 143 ~~~~~v~~~~g~-----~~~a~~vI~AdG~~S 169 (395)
T PRK05732 143 QGSVRVTLDDGE-----TLTGRLLVAADGSHS 169 (395)
T ss_pred CCeEEEEECCCC-----EEEeCEEEEecCCCh
Confidence 456777776553 789999999999874
No 139
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.73 E-value=5.9e-08 Score=98.37 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=78.2
Q ss_pred eEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCc--------cc-cCC---------CcCcee-ccCCCCccccCC-
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGG--------IW-KSC---------SYNSTK-LQSHRSDYEFTD- 62 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG--------~w-~~~---------~~~~~~-~~~~~~~~~~~~- 62 (511)
||+||||||+|+++|..| .| ++|+|+|+.+...- .. ..+ .++.+. ...+.....+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 799999999999999999 89 99999999764311 00 000 000000 000000111100
Q ss_pred -----CCCC--CC---CCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 63 -----FPWP--NR---DDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 63 -----~~~~--~~---~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
..++ +. .......+.++.+.|.+.+... ++ .++++++|+++... ++.++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~----------------~~~~~v~ 142 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRN----------------QDYVRVT 142 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEc----------------CCeEEEE
Confidence 0000 00 0011245677777777777763 66 78889999999873 4457777
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++. ++.+|.||.|.|..|
T Consensus 143 ~~~g~-----~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 143 LDNGQ-----QLRAKLLIAADGANS 162 (382)
T ss_pred ECCCC-----EEEeeEEEEecCCCh
Confidence 65543 789999999999875
No 140
>PLN02697 lycopene epsilon cyclase
Probab=98.73 E-value=1.3e-07 Score=98.32 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=79.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccCCCcCceecc------CCCCccccCCC-CCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKSCSYNSTKLQ------SHRSDYEFTDF-PWPNRDDP 71 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~ 71 (511)
.+||+||||||+|+++|..| .|++|+|+|+..... |.|.. ....+.+. .+.....+.+. +.......
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~-~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWED-EFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchh-HHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 47999999999999999999 899999999864432 45543 11111110 00000011110 00000011
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE-EEEeCCCCceeEEEeCEEEE
Q 010421 72 GFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV-AVQTHNSNSIQRYGFEFLVV 150 (511)
Q Consensus 72 ~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~d~vVl 150 (511)
....+..+.+.|.+.+.+.++ .+ ++++|+.+... ++.+.+ ...++. ++.++.||+
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~----------------~~~~~vv~~~dG~-----~i~A~lVI~ 242 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGV--SY-LSSKVDRITEA----------------SDGLRLVACEDGR-----VIPCRLATV 242 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEc----------------CCcEEEEEEcCCc-----EEECCEEEE
Confidence 125678888888888877776 44 78899998863 333443 333333 789999999
Q ss_pred eecccC
Q 010421 151 CTGKYG 156 (511)
Q Consensus 151 AtG~~~ 156 (511)
|+|..|
T Consensus 243 AdG~~S 248 (529)
T PLN02697 243 ASGAAS 248 (529)
T ss_pred CCCcCh
Confidence 999874
No 141
>PRK11445 putative oxidoreductase; Provisional
Probab=98.72 E-value=1.6e-07 Score=93.94 Aligned_cols=131 Identities=16% Similarity=0.179 Sum_probs=77.7
Q ss_pred CeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCc---------CccccCCC---c-------CceeccCCC----Ccccc
Q 010421 5 SKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSI---------GGIWKSCS---Y-------NSTKLQSHR----SDYEF 60 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~---------GG~w~~~~---~-------~~~~~~~~~----~~~~~ 60 (511)
+||+||||||+|+++|..| ..++|+|+|+.+.. |+....+. . +......+. ....+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 7999999999999999999 33999999998743 22111100 0 000000000 00001
Q ss_pred CC-CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCc
Q 010421 61 TD-FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS 139 (511)
Q Consensus 61 ~~-~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (511)
.+ .............+.++.+.|.+.+ ..++ .++++++|++++.. ++.|.|++... +.
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~----------------~~~~~v~~~~~--g~ 140 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWRE----------------DDGYHVIFRAD--GW 140 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEc----------------CCEEEEEEecC--Cc
Confidence 10 0000000011256777877777643 3455 78899999999873 45577776432 22
Q ss_pred eeEEEeCEEEEeecccC
Q 010421 140 IQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~ 156 (511)
..++.+|.||.|+|..|
T Consensus 141 ~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 141 EQHITARYLVGADGANS 157 (351)
T ss_pred EEEEEeCEEEECCCCCc
Confidence 23689999999999875
No 142
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.72 E-value=1.2e-07 Score=95.77 Aligned_cols=126 Identities=14% Similarity=0.204 Sum_probs=78.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-------Cc----------------cccC-----CCcCceeccCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-------GG----------------IWKS-----CSYNSTKLQSH 54 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-------GG----------------~w~~-----~~~~~~~~~~~ 54 (511)
+||+|||||++|+++|..| .|++|+|+|+.+.. +. .|.. ..+..+.+..+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 6899999999999999999 89999999986321 11 1110 00111111111
Q ss_pred CC--ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 55 RS--DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 55 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
.. ...+... .... ......+.++.+.|.+.+...+ + .++++++|+++... ++.++|+
T Consensus 82 ~g~~~~~~~~~-~~~~-~g~~v~r~~L~~~L~~~~~~~~~v--~~~~~~~v~~i~~~----------------~~~v~v~ 141 (374)
T PRK06617 82 KASEILDLRND-ADAV-LGYVVKNSDFKKILLSKITNNPLI--TLIDNNQYQEVISH----------------NDYSIIK 141 (374)
T ss_pred CCceEEEecCC-CCCC-cEEEEEHHHHHHHHHHHHhcCCCc--EEECCCeEEEEEEc----------------CCeEEEE
Confidence 10 1111110 0000 0122467888888887777765 4 67889999999873 3456676
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++ ++.+|.||.|.|.+|
T Consensus 142 ~~~~------~~~adlvIgADG~~S 160 (374)
T PRK06617 142 FDDK------QIKCNLLIICDGANS 160 (374)
T ss_pred EcCC------EEeeCEEEEeCCCCc
Confidence 6432 789999999999886
No 143
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.71 E-value=6.3e-08 Score=85.67 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=79.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc-cccC-CCcCceeccCCCCccc-cCCCCCCCCCCCCC-CChHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG-IWKS-CSYNSTKLQSHRSDYE-FTDFPWPNRDDPGF-PSYTE 78 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG-~w~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 78 (511)
.||+|+|||||||+||++| .|++|+|||++-.+|| .|.. ..++.+.+..|....- --..|+.+.....+ ....+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 5999999999999999999 9999999999988875 5654 2445555544433221 01122222111111 23455
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC---ceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP---VWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+..-+..-+-..+. .|.-.+.|+++.-.++.. -.| .|+.....+---....+++++||-||||-
T Consensus 111 ~~skl~~~a~~aGa--ki~n~~~veDvi~r~~~r-----------VaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 111 FASKLAARALDAGA--KIFNGVSVEDVIVRDDPR-----------VAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHhcCc--eeeecceEEEEEEecCCc-----------eEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 55555544445565 677777888877632100 000 13222111100011268899999999985
No 144
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.70 E-value=1.4e-07 Score=95.91 Aligned_cols=123 Identities=23% Similarity=0.302 Sum_probs=80.2
Q ss_pred EEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceecc----------------CCCCc----cccC----
Q 010421 8 AIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQ----------------SHRSD----YEFT---- 61 (511)
Q Consensus 8 ~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~----------------~~~~~----~~~~---- 61 (511)
+|||||++|++||..| .|.+|+|+|+++.+|+.+.... +-+|+ .+... ..|.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG--~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISG--GGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccC--CceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 6999999999999999 8899999999998887543211 00010 00000 0000
Q ss_pred -------CCCCCC-CCCCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 62 -------DFPWPN-RDDPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 62 -------~~~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
..++.. .....|+ ...++.+.+...+++.++ .++++++|++++.. ++.|.|
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~----------------~~~~~v 140 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKD----------------DNGFGV 140 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEec----------------CCeEEE
Confidence 000100 0012232 357788888888888888 89999999999762 445666
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccC
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.+ ++. ++.+|.||+|+|..+
T Consensus 141 ~~-~~~-----~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 141 ET-SGG-----EYEADKVILATGGLS 160 (400)
T ss_pred EE-CCc-----EEEcCEEEECCCCcc
Confidence 65 222 689999999999873
No 145
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.70 E-value=5.3e-08 Score=97.47 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEee
Q 010421 74 PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
.....+.+.+.+.+++.|. .++.+++|+++... ++.|+ |.+.++ .+.+|+||+|+
T Consensus 144 i~~~~l~~~l~~~~~~~Gv--~i~~~~~V~~i~~~----------------~~~v~gv~~~~g------~i~ad~vV~a~ 199 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGV--EIRTGTEVTSIDVD----------------GGRVTGVRTSDG------EIRADRVVLAA 199 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT---EEEESEEEEEEEEE----------------TTEEEEEEETTE------EEEECEEEE--
T ss_pred ccccchhhhhHHHHHHhhh--hccccccccchhhc----------------cccccccccccc------ccccceeEecc
Confidence 3467888888888888898 89999999999984 55676 776655 69999999999
Q ss_pred cccC
Q 010421 153 GKYG 156 (511)
Q Consensus 153 G~~~ 156 (511)
|..+
T Consensus 200 G~~s 203 (358)
T PF01266_consen 200 GAWS 203 (358)
T ss_dssp GGGH
T ss_pred cccc
Confidence 9863
No 146
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.69 E-value=1.2e-07 Score=97.15 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=75.1
Q ss_pred eEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCccc-----cCC---------CcCce---e--ccCCCCc--cccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGGIW-----KSC---------SYNST---K--LQSHRSD--YEFT 61 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG~w-----~~~---------~~~~~---~--~~~~~~~--~~~~ 61 (511)
+|+|||||++||++|..| .| ++|+||||.+.++..- ..+ ..+.+ . ...+... +.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 799999999999999999 56 6999999987764211 000 00000 0 0000000 0000
Q ss_pred C--------CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEE
Q 010421 62 D--------FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQ 133 (511)
Q Consensus 62 ~--------~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (511)
+ .............+.++.+.|...+.. . .++++++|++++.. ++.|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~v~~~~~v~~i~~~----------------~~~~~v~~~ 141 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--G--IASFGKRATQIEEQ----------------AEEVQVLFT 141 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--c--eEEcCCEEEEEEec----------------CCcEEEEEc
Confidence 0 000000001123455666666554422 2 47899999999873 445888887
Q ss_pred eCCCCceeEEEeCEEEEeecccC
Q 010421 134 THNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 134 ~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++. ++.+|.||.|.|.+|
T Consensus 142 ~g~-----~~~ad~vVgADG~~S 159 (414)
T TIGR03219 142 DGT-----EYRCDLLIGADGIKS 159 (414)
T ss_pred CCC-----EEEeeEEEECCCccH
Confidence 664 789999999999885
No 147
>PRK07538 hypothetical protein; Provisional
Probab=98.68 E-value=3.2e-07 Score=93.99 Aligned_cols=135 Identities=18% Similarity=0.138 Sum_probs=80.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccC--C---------CcCcee-ccCCCCccccCC-----
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKS--C---------SYNSTK-LQSHRSDYEFTD----- 62 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~--~---------~~~~~~-~~~~~~~~~~~~----- 62 (511)
+||+|||||++|+++|..| .|++|+|||+.+.+. ..... + .++.+. ...+...+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 3899999999999999999 899999999987542 11100 0 000000 000101111100
Q ss_pred ---CCCCCC----CCCCCCChHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe
Q 010421 63 ---FPWPNR----DDPGFPSYTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT 134 (511)
Q Consensus 63 ---~~~~~~----~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 134 (511)
.+.... .+.....+.++.+.|.+.+.+ .+. ..++++++|++++.. ++...+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~----------------~~~~~~~~~~ 143 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQD----------------ADVTVVFLGD 143 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEec----------------CCceEEEEec
Confidence 011000 001124577777777665543 442 259999999999863 2234566665
Q ss_pred CCCCceeEEEeCEEEEeecccC
Q 010421 135 HNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 135 ~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.+++..++.+|.||.|.|.+|
T Consensus 144 ~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 144 RAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred cCCCccceEEeeEEEECCCCCH
Confidence 5444455899999999999986
No 148
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.66 E-value=2.2e-07 Score=71.19 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=57.4
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYL 83 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (511)
+|+|||||+.|+.+|..| .+.+|+++++++.+. ..-.+++..++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~----------------------------------~~~~~~~~~~~ 46 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL----------------------------------PGFDPDAAKIL 46 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS----------------------------------TTSSHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh----------------------------------hhcCHHHHHHH
Confidence 589999999999999999 899999999987652 11245778888
Q ss_pred HHHHHhcCCCCceEeeeEEEEEEEc
Q 010421 84 ESYAKHFDVFKCVRFNSKVVEVRFT 108 (511)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~V~~v~~~ 108 (511)
.+..++.++ .++++++|.+++..
T Consensus 47 ~~~l~~~gV--~v~~~~~v~~i~~~ 69 (80)
T PF00070_consen 47 EEYLRKRGV--EVHTNTKVKEIEKD 69 (80)
T ss_dssp HHHHHHTTE--EEEESEEEEEEEEE
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEe
Confidence 888888899 99999999999983
No 149
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.66 E-value=2.4e-07 Score=94.23 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=75.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc------C-ccccCC---------CcCcee-ccCCCCcccc----
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI------G-GIWKSC---------SYNSTK-LQSHRSDYEF---- 60 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~------G-G~w~~~---------~~~~~~-~~~~~~~~~~---- 60 (511)
.+||+||||||+|+++|..| .|++|+|+|+.+.. + +....+ ..+.+. ...+...+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 47999999999999999999 99999999998641 1 110000 000000 0001011111
Q ss_pred --CCCCCCCCCCC---CCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC
Q 010421 61 --TDFPWPNRDDP---GFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH 135 (511)
Q Consensus 61 --~~~~~~~~~~~---~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (511)
..++++..... ......++.+.|.+.+...+. .++++++|++++... ...-.|++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv--~v~~~~~v~~i~~~~---------------~~~~~V~~~~- 143 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGG--PIRFEASDVALHDFD---------------SDRPYVTYEK- 143 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCC--eEEEeeeEEEEEecC---------------CCceEEEEEc-
Confidence 01111111000 111234555555555555666 799999999987521 2223455532
Q ss_pred CCCceeEEEeCEEEEeecccC
Q 010421 136 NSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++..++.+|.||.|.|.+|
T Consensus 144 -~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 144 -DGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred -CCeEEEEEeCEEEECCCCCC
Confidence 23344789999999999986
No 150
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.66 E-value=2.9e-07 Score=93.84 Aligned_cols=132 Identities=15% Similarity=0.206 Sum_probs=80.0
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccC--C---------CcCcee-ccCCCCccccCC-----
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKS--C---------SYNSTK-LQSHRSDYEFTD----- 62 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~--~---------~~~~~~-~~~~~~~~~~~~----- 62 (511)
.+|+|||||++|+++|..| .|++|+|+|+.+.+. ..... + .++.+. ...+...+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 7899999999999999999 899999999987542 11110 0 000000 000001111111
Q ss_pred ----CCC---CCC-CCCC--CCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 63 ----FPW---PNR-DDPG--FPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 63 ----~~~---~~~-~~~~--~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
..+ ... .... ...+.++.+-|.+.+... ++ .++++++|++++.. ++.++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~----------------~~~v~v~ 144 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQT----------------GNSITAT 144 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecC----------------CCceEEE
Confidence 000 000 0011 135677777777666543 45 68999999999862 4456777
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++++++ ++.+|.||.|.|.+|
T Consensus 145 ~~~~~~~~--~~~adlvIgADG~~S 167 (400)
T PRK06475 145 IIRTNSVE--TVSAAYLIACDGVWS 167 (400)
T ss_pred EEeCCCCc--EEecCEEEECCCccH
Confidence 76543222 689999999999986
No 151
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.64 E-value=2.7e-08 Score=73.28 Aligned_cols=50 Identities=36% Similarity=0.483 Sum_probs=41.0
Q ss_pred EECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCcc
Q 010421 9 IIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDY 58 (511)
Q Consensus 9 IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~ 58 (511)
|||||++||++|..| .+.+|+|+|+++.+||.+....+++...+.....+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~ 52 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYF 52 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEE
Confidence 899999999999999 88999999999999999988666776665544433
No 152
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.64 E-value=4.4e-07 Score=95.12 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=34.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
|+..+||+|||||+.|+++|..| .|++|+|+|+++..+|
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 45568999999999999999999 9999999999765444
No 153
>PLN02661 Putative thiazole synthesis
Probab=98.63 E-value=1.7e-07 Score=91.19 Aligned_cols=136 Identities=16% Similarity=0.253 Sum_probs=75.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCcCc-cccCCC-cCceeccCCCC-ccccCCCCCCCCCCCCCC---
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSIGG-IWKSCS-YNSTKLQSHRS-DYEFTDFPWPNRDDPGFP--- 74 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~GG-~w~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 74 (511)
.+||+|||||++|+.+|..| . +++|+|+|++..+|| .|.... +....+..+.. .+.--..++... ..|.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~--dgy~vv~ 169 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ--ENYVVIK 169 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC--CCeeEec
Confidence 47999999999999999999 3 799999999988876 554311 11111111111 011112233211 1111
Q ss_pred ChHHHHHHHHHHH-HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC---ceEEEEEeCCCC---ceeEEEeCE
Q 010421 75 SYTEILDYLESYA-KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP---VWEVAVQTHNSN---SIQRYGFEF 147 (511)
Q Consensus 75 ~~~~~~~yl~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~---~~~~~~~d~ 147 (511)
...++...|...+ ++.++ .+..++.|+++...++.- .| .|.+...++..+ +...+.+++
T Consensus 170 ha~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~grV------------aGVVvnw~~v~~~~~~~s~~dp~~I~Aka 235 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGDRV------------GGVVTNWALVAQNHDTQSCMDPNVMEAKV 235 (357)
T ss_pred chHHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecCCEE------------EEEEeecchhhhccCCCCccceeEEECCE
Confidence 2234444454433 34566 788888888887631000 01 032222222211 223689999
Q ss_pred EEEeeccc
Q 010421 148 LVVCTGKY 155 (511)
Q Consensus 148 vVlAtG~~ 155 (511)
||+|||+.
T Consensus 236 VVlATGh~ 243 (357)
T PLN02661 236 VVSSCGHD 243 (357)
T ss_pred EEEcCCCC
Confidence 99999975
No 154
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.61 E-value=3e-07 Score=94.75 Aligned_cols=135 Identities=13% Similarity=0.163 Sum_probs=78.9
Q ss_pred CeEEEECCCHHHHHHHHhc-c-----CCCcEEEcCCCCcC----------ccccC----------------CCcCce---
Q 010421 5 SKIAIIGAGVSGLAAVKQL-R-----HHNPVVFEASDSIG----------GIWKS----------------CSYNST--- 49 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~-----g~~v~v~e~~~~~G----------G~w~~----------------~~~~~~--- 49 (511)
+||+|||||++|+++|..| . |++|+|+|+++... |.+.. ..++.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 5899999999999999999 5 89999999943211 10000 001111
Q ss_pred --------eccCCC--CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC---CCCceEeeeEEEEEEEcCCCCcccC
Q 010421 50 --------KLQSHR--SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFD---VFKCVRFNSKVVEVRFTGSLETTDS 116 (511)
Q Consensus 50 --------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~v~~~~~~~~~~~ 116 (511)
...... ....|+..+.... .........+.+.|.+.+.+.+ + .++++++|++++.....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~L~~~~~~~~~~~v--~i~~~~~v~~i~~~~~~~---- 153 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKED-MACIIENDNIQNSLYNRLQEYNGDNV--KILNPARLISVTIPSKYP---- 153 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCc-eEEEEEHHHHHHHHHHHHHhCCCCCe--EEecCCeeEEEEeccccc----
Confidence 100000 0111211110000 0112356777788877776664 5 789999999998521000
Q ss_pred CCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 117 GGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 117 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
. +.....+|++.+++ ++.+|.||.|.|.+|
T Consensus 154 ----~-~~~~~v~v~~~~g~-----~i~a~llVgADG~~S 183 (437)
T TIGR01989 154 ----N-DNSNWVHITLSDGQ-----VLYTKLLIGADGSNS 183 (437)
T ss_pred ----c-CCCCceEEEEcCCC-----EEEeeEEEEecCCCC
Confidence 0 01334567666554 899999999999986
No 155
>PRK06996 hypothetical protein; Provisional
Probab=98.61 E-value=2.3e-07 Score=94.53 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=80.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC----CCcEEEcCCCCcC---------------------ccccCCCcC--ceeccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH----HNPVVFEASDSIG---------------------GIWKSCSYN--STKLQS 53 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g----~~v~v~e~~~~~G---------------------G~w~~~~~~--~~~~~~ 53 (511)
+.+||+||||||+|+++|..| .| ++|+|+|+.+... |.|.....+ ......
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 457999999999999999999 54 5799999965321 111110011 111110
Q ss_pred CC--C--ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 54 HR--S--DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 54 ~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
.. . .+.+.++..+. ........++.+.|.+.+...++ .+.++++|++++.. ...++
T Consensus 90 ~~~~g~~~~~~~~~~~~~--~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~----------------~~~v~ 149 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPA--LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQD----------------ADGVT 149 (398)
T ss_pred CCCCceEEecccccCCCc--CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeec----------------CCeEE
Confidence 00 0 01111111110 01124567888888888887776 78899999998762 44577
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecc
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+++.+++++ .++.+|.||.|.|.
T Consensus 150 v~~~~~~g~--~~i~a~lvIgADG~ 172 (398)
T PRK06996 150 LALGTPQGA--RTLRARIAVQAEGG 172 (398)
T ss_pred EEECCCCcc--eEEeeeEEEECCCC
Confidence 776654322 37999999999995
No 156
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.60 E-value=5.2e-07 Score=91.57 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=74.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc------C-ccccCC---------CcCcee-ccCCCCccccC---
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI------G-GIWKSC---------SYNSTK-LQSHRSDYEFT--- 61 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~------G-G~w~~~---------~~~~~~-~~~~~~~~~~~--- 61 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+.. + +....+ ..+.+. ...+...+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 47999999999999999999 99999999998741 1 110000 000000 00011111110
Q ss_pred ---CCCCCCCCC-CC--CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC
Q 010421 62 ---DFPWPNRDD-PG--FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH 135 (511)
Q Consensus 62 ---~~~~~~~~~-~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (511)
..+++.... .. ......+..-|.+.+...+. .++++++++.+.... .....|++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~~~~~~~~v~~~~~~---------------~~~~~V~~~~~ 144 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGL--TTVYDADDVRLHDLA---------------GDRPYVTFERD 144 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCC--eEEEeeeeEEEEecC---------------CCccEEEEEEC
Confidence 011111100 00 11234455555555555666 788998887775421 22345666521
Q ss_pred CCCceeEEEeCEEEEeecccC
Q 010421 136 NSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++..++++|.||-|.|.+|
T Consensus 145 --g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 145 --GERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred --CeEEEEEeCEEEECCCCch
Confidence 2234689999999999986
No 157
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.60 E-value=5.8e-07 Score=94.24 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
..+...+...+.+.|. .+..+++|+++... ++.|.|.+.++. ++..++.++.||.|+|.++
T Consensus 155 ~rl~~~l~~~a~~~Ga--~i~~~~~V~~i~~~----------------~~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGA--TILTRTRCVSARRE----------------GGLWRVETRDAD-GETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCC--EEecCcEEEEEEEc----------------CCEEEEEEEeCC-CCEEEEEecEEEECCCccH
Confidence 3344445555677787 88899999999872 456888877765 5556799999999999863
No 158
>PRK05868 hypothetical protein; Validated
Probab=98.60 E-value=7.3e-07 Score=89.86 Aligned_cols=127 Identities=12% Similarity=0.097 Sum_probs=73.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc---cccC--C-------------------CcCceeccCCCCcc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG---IWKS--C-------------------SYNSTKLQSHRSDY 58 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG---~w~~--~-------------------~~~~~~~~~~~~~~ 58 (511)
+||+|||||++|+++|..| .|++|+|+|+.+.+.. .... + ...+.....+...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~- 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN- 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC-
Confidence 5899999999999999999 8999999999876431 1000 0 0111111111100
Q ss_pred ccCCCCCCCCCCCC------CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEE
Q 010421 59 EFTDFPWPNRDDPG------FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAV 132 (511)
Q Consensus 59 ~~~~~~~~~~~~~~------~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (511)
.+...+........ -..+.++.+-+...+ ..+. .++|+++|++++.. ++..+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v--~i~~~~~v~~i~~~----------------~~~v~v~~ 141 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSV--EYLFDDSISTLQDD----------------GDSVRVTF 141 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCc--EEEeCCEEEEEEec----------------CCeEEEEE
Confidence 00000000000000 112344444443322 2344 78999999999862 44566777
Q ss_pred EeCCCCceeEEEeCEEEEeecccC
Q 010421 133 QTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 133 ~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++. ++.+|.||-|.|.+|
T Consensus 142 ~dg~-----~~~adlvIgADG~~S 160 (372)
T PRK05868 142 ERAA-----AREFDLVIGADGLHS 160 (372)
T ss_pred CCCC-----eEEeCEEEECCCCCc
Confidence 6664 789999999999886
No 159
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.60 E-value=7.1e-07 Score=92.96 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=34.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC--cCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS--IGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~--~GG 39 (511)
|...+||+|||+|++|++||.++ .|.+|+|+||.+. .||
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG 43 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG 43 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc
Confidence 66788999999999999999999 8999999999864 455
No 160
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.59 E-value=1.1e-06 Score=94.36 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=84.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCcC--c----cccC----------------CCc--CceeccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSIG--G----IWKS----------------CSY--NSTKLQS 53 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~G--G----~w~~----------------~~~--~~~~~~~ 53 (511)
|...+||+||||||+||++|..| . |++|+|+|+.+..- | .+.. ..+ .......
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~ 108 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK 108 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence 44567999999999999999999 4 89999999976431 1 1110 000 0000000
Q ss_pred C-----CCccc---cCCCCCCC-CCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCC
Q 010421 54 H-----RSDYE---FTDFPWPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124 (511)
Q Consensus 54 ~-----~~~~~---~~~~~~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 124 (511)
+ ..... +.+.+... .......+...+.+.|.+.+.+.+..-.++++++|++++...+ +
T Consensus 109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~-------------~ 175 (634)
T PRK08294 109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEE-------------G 175 (634)
T ss_pred CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCC-------------C
Confidence 0 00000 01110000 0011223556677888887777653225788999999987311 1
Q ss_pred CCceEEEEEeCC---CCceeEEEeCEEEEeecccC
Q 010421 125 HPVWEVAVQTHN---SNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 125 ~~~~~v~~~~~~---~~~~~~~~~d~vVlAtG~~~ 156 (511)
....+|++++.+ +++..++.+|+||-|.|.+|
T Consensus 176 ~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 176 EYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS 210 (634)
T ss_pred CCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch
Confidence 234677776542 24445899999999999987
No 161
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.58 E-value=4.9e-07 Score=91.45 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+.+||+|||||+.|+++|.+| .|.+|+|+|++...
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 458999999999999999999 89999999997543
No 162
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.58 E-value=5e-07 Score=91.51 Aligned_cols=57 Identities=28% Similarity=0.290 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+.+.+.+.++..+. .+..+++|++++.. ++.+.|.+.++ ++.+|+||+|+|.
T Consensus 143 ~p~~~~~~l~~~~~~~g~--~~~~~~~V~~i~~~----------------~~~~~v~~~~~------~i~a~~vV~aaG~ 198 (380)
T TIGR01377 143 YAEKALRALQELAEAHGA--TVRDGTKVVEIEPT----------------ELLVTVKTTKG------SYQANKLVVTAGA 198 (380)
T ss_pred cHHHHHHHHHHHHHHcCC--EEECCCeEEEEEec----------------CCeEEEEeCCC------EEEeCEEEEecCc
Confidence 345566667777777787 78889999999872 44566655432 6899999999997
Q ss_pred c
Q 010421 155 Y 155 (511)
Q Consensus 155 ~ 155 (511)
.
T Consensus 199 ~ 199 (380)
T TIGR01377 199 W 199 (380)
T ss_pred c
Confidence 6
No 163
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.57 E-value=7.7e-07 Score=92.84 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC-CcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD-SIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~-~~GG 39 (511)
|...+||+|||||+||+.||..+ .|.+|+++|++. .+|+
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 44679999999999999999999 899999999973 5654
No 164
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.55 E-value=7.3e-08 Score=85.89 Aligned_cols=135 Identities=21% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc-cccC-CCcCceeccCCCCccc-cCCCCCCCCCCCCC-CChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG-IWKS-CSYNSTKLQSHRSDYE-FTDFPWPNRDDPGF-PSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG-~w~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~ 77 (511)
.+||+||||||+||+||+.| .|++|+|||++..+|| .|.. ..++...++.|...+- --..++.+.....| ....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 47999999999999999999 8999999999998886 5654 2455555555433221 01122221111112 3556
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEe------CCCCceeEEEeCEEEE
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQT------HNSNSIQRYGFEFLVV 150 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~------~~~~~~~~~~~d~vVl 150 (511)
++...|..-+-+-+. .+.-.+.|+++--.. +++.. |.++- +---....++++.||-
T Consensus 97 ~~~s~L~s~a~~aGa--kifn~~~vEDvi~r~---------------~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViD 159 (230)
T PF01946_consen 97 EFTSTLASKAIDAGA--KIFNLTSVEDVIVRE---------------DDRVAGVVINWTPVEMAGLHVDPLTIRAKVVID 159 (230)
T ss_dssp HHHHHHHHHHHTTTE--EEEETEEEEEEEEEC---------------SCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE
T ss_pred HHHHHHHHHHhcCCC--EEEeeeeeeeeEEEc---------------CCeEEEEEEEehHHhHhhcCCCcceEEEeEEEe
Confidence 666666555555665 566667888877631 11111 11110 0000123789999999
Q ss_pred eeccc
Q 010421 151 CTGKY 155 (511)
Q Consensus 151 AtG~~ 155 (511)
||||-
T Consensus 160 aTGHd 164 (230)
T PF01946_consen 160 ATGHD 164 (230)
T ss_dssp ---SS
T ss_pred CCCCc
Confidence 99985
No 165
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.55 E-value=5.7e-07 Score=91.47 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~G 38 (511)
.+||+|||||++|+++|.+| . |.+|+|+|+...+|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 37999999999999999999 5 89999999986554
No 166
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.55 E-value=4.5e-08 Score=100.31 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=33.3
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCC---cCceecc------C----CCCccccCCCCCCC---
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCS---YNSTKLQ------S----HRSDYEFTDFPWPN--- 67 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~---~~~~~~~------~----~~~~~~~~~~~~~~--- 67 (511)
||||||||++|++||..+ .|.+|+|+|+.+.+||...... ..+.... . ...+......+.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 899999999999999999 9999999999999999766521 1111100 0 00000000001110
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 68 RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
+........+.+...+.+.+.+.++ .+.+++.|.++...+ +..+.|.+.+.. + ..++.++.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~---------------~~i~~V~~~~~~-g-~~~i~A~~ 141 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDG---------------GRITGVIVETKS-G-RKEIRAKV 141 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccc---------------cccccccccccc-c-cccccccc
Confidence 1001123444555667777777788 899999999998731 334556666543 2 34899999
Q ss_pred EEEeeccc
Q 010421 148 LVVCTGKY 155 (511)
Q Consensus 148 vVlAtG~~ 155 (511)
+|-|||--
T Consensus 142 ~IDaTG~g 149 (428)
T PF12831_consen 142 FIDATGDG 149 (428)
T ss_dssp --------
T ss_pred cccccccc
Confidence 99999953
No 167
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.53 E-value=2e-06 Score=88.79 Aligned_cols=132 Identities=23% Similarity=0.210 Sum_probs=81.5
Q ss_pred eEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCccccC--------CC----cCce-----------------ecc-
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGGIWKS--------CS----YNST-----------------KLQ- 52 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG~w~~--------~~----~~~~-----------------~~~- 52 (511)
||+|||+|.+|++||.++ .| .+|+|+||.+..||.-.. +. ..+. ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 799999999999999999 88 999999998877654221 00 0000 000
Q ss_pred --------CCCC---ccccCCCCCCC-------C--CC------CCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEE
Q 010421 53 --------SHRS---DYEFTDFPWPN-------R--DD------PGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVR 106 (511)
Q Consensus 53 --------~~~~---~~~~~~~~~~~-------~--~~------~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~ 106 (511)
.... .+. ...++.. . .. .....+.++.+.+...+++.++ .++++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv--~i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI--DTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC--EEEeCCEeeEeE
Confidence 0000 000 0111100 0 00 0113456788888888988888 899999999998
Q ss_pred EcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 107 FTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
... ++ .+-|.+.+.+ ++...+.+|.||+|||.++
T Consensus 158 ~~~---------------~g~v~Gv~~~~~~-g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 158 QDD---------------QGTVVGVVVKGKG-KGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred ECC---------------CCcEEEEEEEeCC-CeEEEEecceEEEecCCCC
Confidence 721 22 2334454432 3334578999999999874
No 168
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.51 E-value=2.1e-06 Score=89.38 Aligned_cols=101 Identities=23% Similarity=0.210 Sum_probs=75.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ...++..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 215 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL--------------------------------PG--EDAEVSK 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--------------------------------CC--CCHHHHH
Confidence 46899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++...+...++ ...++.+|.||+|+| ..|+.
T Consensus 216 ~~~~~l~~~gi--~i~~~~~v~~i~~~----------------~~~v~v~~~~g---~~~~i~~D~vi~a~G---~~p~~ 271 (461)
T TIGR01350 216 VVAKALKKKGV--KILTNTKVTAVEKN----------------DDQVVYENKGG---ETETLTGEKVLVAVG---RKPNT 271 (461)
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEEe----------------CCEEEEEEeCC---cEEEEEeCEEEEecC---CcccC
Confidence 77777788888 89999999999862 33344444333 223689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 272 ~ 272 (461)
T TIGR01350 272 E 272 (461)
T ss_pred C
Confidence 5
No 169
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.51 E-value=6.9e-07 Score=89.69 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=79.3
Q ss_pred eEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc--cccCC--CcCc---------eeccCCCCccccCCCCCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG--IWKSC--SYNS---------TKLQSHRSDYEFTDFPWPNR 68 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG--~w~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~ 68 (511)
||+|||||+||+++|..| . |++|+|+|+.+.+|| +|..- .... +....+.....+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999 4 899999999988877 44331 0000 00000111111111100000
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEE
Q 010421 69 DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFL 148 (511)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 148 (511)
.........++.+++.. +.+. .+.++++|++++. + . |++.++. ++.+|.|
T Consensus 81 ~~Y~~I~r~~f~~~l~~---~l~~--~i~~~~~V~~v~~-----------------~-~--v~l~dg~-----~~~A~~V 130 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQ---AFPE--GVILGRKAVGLDA-----------------D-G--VDLAPGT-----RINARSV 130 (370)
T ss_pred CCceEEEHHHHHHHHHH---hhcc--cEEecCEEEEEeC-----------------C-E--EEECCCC-----EEEeeEE
Confidence 01222345666666643 3333 3777889998843 2 1 5555554 7999999
Q ss_pred EEeecccCCCCCCCCCCCCCCCCcccceEEe
Q 010421 149 VVCTGKYGDVPIIPAFPNNKGPEVFEGQVLH 179 (511)
Q Consensus 149 VlAtG~~~~~p~~p~~~~~~g~~~~~g~~~h 179 (511)
|.|.|..+ . .+... +...|.|-.+.
T Consensus 131 I~A~G~~s-~--~~~~~---~~Q~f~G~~~r 155 (370)
T TIGR01789 131 IDCRGFKP-S--AHLKG---GFQVFLGREMR 155 (370)
T ss_pred EECCCCCC-C--ccccc---eeeEEEEEEEE
Confidence 99999753 1 11113 55666665444
No 170
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.50 E-value=1.8e-06 Score=87.90 Aligned_cols=103 Identities=22% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
+++++|||||+.|+..|..+ .|.+|+|+|+.+.+- +. ..+++.+
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL--------------------------------p~--~D~ei~~ 218 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL--------------------------------PG--EDPEISK 218 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------------Cc--CCHHHHH
Confidence 46899999999999999999 999999999987651 11 2468889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++....++.++ .++++++|+.++.. ++...++++++.++ ++.+|.|++|+| ..|++
T Consensus 219 ~~~~~l~~~gv--~i~~~~~v~~~~~~----------------~~~v~v~~~~g~~~---~~~ad~vLvAiG---R~Pn~ 274 (454)
T COG1249 219 ELTKQLEKGGV--KILLNTKVTAVEKK----------------DDGVLVTLEDGEGG---TIEADAVLVAIG---RKPNT 274 (454)
T ss_pred HHHHHHHhCCe--EEEccceEEEEEec----------------CCeEEEEEecCCCC---EEEeeEEEEccC---CccCC
Confidence 99888888667 78999999999873 22256777666422 688999999999 67888
Q ss_pred CCC
Q 010421 162 PAF 164 (511)
Q Consensus 162 p~~ 164 (511)
.++
T Consensus 275 ~~L 277 (454)
T COG1249 275 DGL 277 (454)
T ss_pred CCC
Confidence 754
No 171
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.50 E-value=2e-06 Score=82.31 Aligned_cols=150 Identities=22% Similarity=0.287 Sum_probs=109.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||.-||..+.-. .|.+||++|-.+++|+... .|+..
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD----------------------------------~Eisk 256 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD----------------------------------GEISK 256 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC----------------------------------HHHHH
Confidence 36899999999999988877 8999999999998876422 36677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
-+++...+-++ .+.++++|..+.+. +++...|++++..+++.++++||.+.+|+| ..|.+
T Consensus 257 ~~qr~L~kQgi--kF~l~tkv~~a~~~---------------~dg~v~i~ve~ak~~k~~tle~DvlLVsiG---RrP~t 316 (506)
T KOG1335|consen 257 AFQRVLQKQGI--KFKLGTKVTSATRN---------------GDGPVEIEVENAKTGKKETLECDVLLVSIG---RRPFT 316 (506)
T ss_pred HHHHHHHhcCc--eeEeccEEEEeecc---------------CCCceEEEEEecCCCceeEEEeeEEEEEcc---Ccccc
Confidence 77777888888 88999999999983 366788999998888888999999999999 67776
Q ss_pred CCC--CCCCCCC-cccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHH
Q 010421 162 PAF--PNNKGPE-VFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAE 218 (511)
Q Consensus 162 p~~--~~~~g~~-~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~ 218 (511)
-++ ... |++ ++.|++.--.+|.. +--+|-.||--.-|-=+|.....
T Consensus 317 ~GLgle~i-Gi~~D~r~rv~v~~~f~t----------~vP~i~~IGDv~~gpMLAhkAee 365 (506)
T KOG1335|consen 317 EGLGLEKI-GIELDKRGRVIVNTRFQT----------KVPHIYAIGDVTLGPMLAHKAEE 365 (506)
T ss_pred cCCChhhc-ccccccccceeccccccc----------cCCceEEecccCCcchhhhhhhh
Confidence 543 111 222 34455554444433 22468888876666555544433
No 172
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.48 E-value=3.4e-06 Score=87.94 Aligned_cols=104 Identities=24% Similarity=0.255 Sum_probs=74.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+++|+.+.+. +. ...++.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il--------------------------------~~--~~~~~~~ 225 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL--------------------------------PT--EDAELSK 225 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC--------------------------------Cc--CCHHHHH
Confidence 46899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++...+ ++...+...+ ++..++.+|.||+|+| ..|+.
T Consensus 226 ~l~~~l~~~gI--~i~~~~~v~~i~~~~~--------------~~~~~~~~~~---g~~~~i~~D~vi~a~G---~~p~~ 283 (472)
T PRK05976 226 EVARLLKKLGV--RVVTGAKVLGLTLKKD--------------GGVLIVAEHN---GEEKTLEADKVLVSVG---RRPNT 283 (472)
T ss_pred HHHHHHHhcCC--EEEeCcEEEEEEEecC--------------CCEEEEEEeC---CceEEEEeCEEEEeeC---CccCC
Confidence 77777788888 8999999999975100 2211222222 2233689999999999 45666
Q ss_pred CC
Q 010421 162 PA 163 (511)
Q Consensus 162 p~ 163 (511)
+.
T Consensus 284 ~~ 285 (472)
T PRK05976 284 EG 285 (472)
T ss_pred CC
Confidence 43
No 173
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.47 E-value=9.6e-07 Score=87.51 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=42.5
Q ss_pred CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 91 DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 91 ~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+. .++++++|+++++. .++.|.|.+.+..+++..++.+++|+|+.|..+
T Consensus 196 ~~--~~~~~~eV~~i~r~---------------~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 196 GF--ELHLNHEVTDIKRN---------------GDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred Cc--EEEecCEeCeeEEC---------------CCCCEEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 66 89999999999994 278899999887777777999999999999874
No 174
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.46 E-value=2.2e-06 Score=87.82 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+||+|||||..|+++|.+| .|.+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 5999999999999999999 78999999998644
No 175
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.46 E-value=3.8e-06 Score=88.12 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=33.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
.+||||||+|.+|++||..+ .|.+|+|+||....||.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN 99 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence 57999999999999999999 89999999999888763
No 176
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.46 E-value=1.6e-06 Score=86.77 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG 39 (511)
+.+||+|||||+.|+++|..| . +++|+|+||.+.+|.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 468999999999999999999 4 499999999998873
No 177
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.45 E-value=6e-06 Score=85.92 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=76.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ..+++.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 217 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL--------------------------------PG--EDKEISK 217 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--------------------------------Cc--CCHHHHH
Confidence 36899999999999999999 889999999976541 11 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+++..++.++ .++++++|++++.. ++.+.+.+.++ +...++.+|.||+|+| ..|+.
T Consensus 218 ~l~~~l~~~gV--~i~~~~~V~~i~~~----------------~~~v~v~~~~g--g~~~~i~~D~vi~a~G---~~p~~ 274 (462)
T PRK06416 218 LAERALKKRGI--KIKTGAKAKKVEQT----------------DDGVTVTLEDG--GKEETLEADYVLVAVG---RRPNT 274 (462)
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEEe----------------CCEEEEEEEeC--CeeEEEEeCEEEEeeC---CccCC
Confidence 77777888888 89999999999872 33455555544 2233789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 275 ~ 275 (462)
T PRK06416 275 E 275 (462)
T ss_pred C
Confidence 4
No 178
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.45 E-value=2.6e-06 Score=87.46 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=35.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
|+..+||+|||+|.|||+||.++ .|.+|+|+||.+..||
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg 40 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC 40 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC
Confidence 66678999999999999999999 9999999999887665
No 179
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.44 E-value=2.2e-06 Score=87.91 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
.+..+...+.+.+++.++ .++++++|+++... +++ --|...+..+++...+.++.||+|||
T Consensus 139 ~g~~~~~~l~~~~~~~gv--~i~~~~~~~~Li~e----------------~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtG 200 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGV--DIRFNTRVTDLITE----------------DGRVTGVVAENPADGEFVRIKAKAVILATG 200 (417)
T ss_dssp HHHHHHHHHHHHHHHTTE--EEEESEEEEEEEEE----------------TTEEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred cHHHHHHHHHHHHhhcCe--eeeccceeeeEEEe----------------CCceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence 567788888999999997 89999999999983 222 22445544556667899999999999
Q ss_pred ccC
Q 010421 154 KYG 156 (511)
Q Consensus 154 ~~~ 156 (511)
.+.
T Consensus 201 G~~ 203 (417)
T PF00890_consen 201 GFG 203 (417)
T ss_dssp -BG
T ss_pred ccc
Confidence 773
No 180
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.43 E-value=3.1e-06 Score=85.54 Aligned_cols=96 Identities=11% Similarity=0.172 Sum_probs=73.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.+.. .. ..+++..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~--~~~~~~~ 187 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SL--MPPEVSS 187 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hh--CCHHHHH
Confidence 46899999999999999999 7899999999765410 00 1234566
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+..++.++ .+.++++|.+++.. .+.+.|.+.++. ++.+|.||+|+|..
T Consensus 188 ~l~~~l~~~gV--~i~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~i~~D~vI~a~G~~ 238 (377)
T PRK04965 188 RLQHRLTEMGV--HLLLKSQLQGLEKT----------------DSGIRATLDSGR-----SIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHHhCCC--EEEECCeEEEEEcc----------------CCEEEEEEcCCc-----EEECCEEEECcCCC
Confidence 77777788888 88999999999862 345667766554 79999999999953
No 181
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.42 E-value=3.3e-06 Score=87.23 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~G 38 (511)
.+||+|||||++|+++|..| .+.+|+|+||.+.+|
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 47999999999999999999 479999999955555
No 182
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.42 E-value=2.4e-06 Score=90.37 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.+||+|||||+.|+++|..| .|++|+|+|+++-
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 58999999999999999999 8999999999653
No 183
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.41 E-value=2.7e-07 Score=70.72 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=31.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
||+|||+|.+|+|+|..|+..+.+ ||++.|++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~-----vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE-----VTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-----EEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE-----EEEEeccchhh
Confidence 699999999999999999998754 99999998744
No 184
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.41 E-value=2.9e-06 Score=80.01 Aligned_cols=141 Identities=23% Similarity=0.340 Sum_probs=92.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC--cc---------------------------ccCC-CcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG--GI---------------------------WKSC-SYNS 48 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G--G~---------------------------w~~~-~~~~ 48 (511)
|.+..+|+|||||.-|+++|.+| .|.++.++|+-+-+- |. |+.+ ...+
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 45678999999999999999999 889999999855321 11 1110 0000
Q ss_pred eec---------cCC------------------------CCc-cccC-CCCCCCCC------CCCCCChHHHHHHHHHHH
Q 010421 49 TKL---------QSH------------------------RSD-YEFT-DFPWPNRD------DPGFPSYTEILDYLESYA 87 (511)
Q Consensus 49 ~~~---------~~~------------------------~~~-~~~~-~~~~~~~~------~~~~~~~~~~~~yl~~~~ 87 (511)
..+ ..+ ... -.|+ ..++|+.+ ...+.....-..-++.++
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 000 000 000 0233 45566543 345567778888899999
Q ss_pred HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCC
Q 010421 88 KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP 162 (511)
Q Consensus 88 ~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p 162 (511)
++.|. -++.+.+|..+...++ + ...-.|.++++. .+.++++|+++|.+ -...+|
T Consensus 164 ~~~G~--i~~dg~~v~~~~~~~e-~------------~~~v~V~Tt~gs-----~Y~akkiI~t~GaW-i~klL~ 217 (399)
T KOG2820|consen 164 RELGV--IFRDGEKVKFIKFVDE-E------------GNHVSVQTTDGS-----IYHAKKIIFTVGAW-INKLLP 217 (399)
T ss_pred HHcCe--EEecCcceeeEeeccC-C------------CceeEEEeccCC-----eeecceEEEEecHH-HHhhcC
Confidence 99998 7899999999887521 1 333456666664 69999999999987 344444
No 185
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.41 E-value=7.2e-06 Score=85.31 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=76.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ..+++..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 211 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL--------------------------------PR--EEPEISA 211 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--------------------------------Cc--cCHHHHH
Confidence 36899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|.+++.. ++...+++...++ ..++.+|.||+|+| ..|+.
T Consensus 212 ~l~~~l~~~gV--~i~~~~~V~~i~~~----------------~~~~~v~~~~~~~--~~~i~~D~ViiA~G---~~p~~ 268 (463)
T TIGR02053 212 AVEEALAEEGI--EVVTSAQVKAVSVR----------------GGGKIITVEKPGG--QGEVEADELLVATG---RRPNT 268 (463)
T ss_pred HHHHHHHHcCC--EEEcCcEEEEEEEc----------------CCEEEEEEEeCCC--ceEEEeCEEEEeEC---CCcCC
Confidence 77777888888 89999999999862 2334555543221 23789999999999 45666
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 269 ~ 269 (463)
T TIGR02053 269 D 269 (463)
T ss_pred C
Confidence 5
No 186
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.39 E-value=5.5e-06 Score=83.94 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.+||+|||+|.+|+++|..| .|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 48999999999999999999 899999999863
No 187
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.39 E-value=1e-05 Score=84.20 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=76.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+. +.+ ..++..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~~~--d~~~~~ 217 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL--------------------------------PNE--DAEVSK 217 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------Ccc--CHHHHH
Confidence 36899999999999999999 889999999875441 111 245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++...+.+... ++...++.+|.||+|+| ..|+.
T Consensus 218 ~l~~~l~~~gV--~i~~~~~v~~i~~~----------------~~~~~v~~~~~-~g~~~~i~~D~vi~a~G---~~pn~ 275 (466)
T PRK07818 218 EIAKQYKKLGV--KILTGTKVESIDDN----------------GSKVTVTVSKK-DGKAQELEADKVLQAIG---FAPRV 275 (466)
T ss_pred HHHHHHHHCCC--EEEECCEEEEEEEe----------------CCeEEEEEEec-CCCeEEEEeCEEEECcC---cccCC
Confidence 77777888888 89999999999862 23345555421 22233789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 276 ~ 276 (466)
T PRK07818 276 E 276 (466)
T ss_pred C
Confidence 4
No 188
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.39 E-value=2.7e-06 Score=85.65 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
+||+|||||++|+++|.+| .|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999 8999999999653
No 189
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.38 E-value=2.2e-06 Score=88.74 Aligned_cols=61 Identities=13% Similarity=0.284 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHh----cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEE
Q 010421 75 SYTEILDYLESYAKH----FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVV 150 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~----~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVl 150 (511)
....+...+.+.+++ .|..-.++++++|++++.. +++.|.|.+.++ ++.+|+||+
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~---------------~~~~~~V~T~~G------~i~A~~VVv 267 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS---------------NDSLYKIHTNRG------EIRARFVVV 267 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec---------------CCCeEEEEECCC------EEEeCEEEE
Confidence 334555555566666 5521268899999999873 145677776544 789999999
Q ss_pred eecccC
Q 010421 151 CTGKYG 156 (511)
Q Consensus 151 AtG~~~ 156 (511)
|+|.++
T Consensus 268 aAG~~S 273 (497)
T PTZ00383 268 SACGYS 273 (497)
T ss_pred CcChhH
Confidence 999874
No 190
>PRK07208 hypothetical protein; Provisional
Probab=98.38 E-value=6.5e-07 Score=93.61 Aligned_cols=43 Identities=42% Similarity=0.621 Sum_probs=40.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|++.+||+|||||++||+||..| .|++|+|+|+++.+||.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 77889999999999999999999 79999999999999998765
No 191
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=1.2e-05 Score=83.72 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=76.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.+. +. ...++..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 228 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL--------------------------------AA--ADEQVAK 228 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC--------------------------------Cc--CCHHHHH
Confidence 46899999999999999998 889999999976541 11 1245666
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++...+.+.+++ ++..++.+|.||+|+| ..|+.
T Consensus 229 ~~~~~l~~~gi--~i~~~~~v~~i~~~----------------~~~v~v~~~~~~-g~~~~i~~D~vl~a~G---~~p~~ 286 (475)
T PRK06327 229 EAAKAFTKQGL--DIHLGVKIGEIKTG----------------GKGVSVAYTDAD-GEAQTLEVDKLIVSIG---RVPNT 286 (475)
T ss_pred HHHHHHHHcCc--EEEeCcEEEEEEEc----------------CCEEEEEEEeCC-CceeEEEcCEEEEccC---CccCC
Confidence 77777777788 89999999999862 233445555432 3334789999999999 46776
Q ss_pred CC
Q 010421 162 PA 163 (511)
Q Consensus 162 p~ 163 (511)
+.
T Consensus 287 ~~ 288 (475)
T PRK06327 287 DG 288 (475)
T ss_pred CC
Confidence 53
No 192
>PRK06370 mercuric reductase; Validated
Probab=98.37 E-value=9.8e-06 Score=84.29 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 216 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL--------------------------------PR--EDEDVAA 216 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC--------------------------------cc--cCHHHHH
Confidence 36899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++....++.++ .++++++|.+++.. ++...|.+....++ .++.+|.||+|+| ..|+.
T Consensus 217 ~l~~~l~~~GV--~i~~~~~V~~i~~~----------------~~~~~v~~~~~~~~--~~i~~D~Vi~A~G---~~pn~ 273 (463)
T PRK06370 217 AVREILEREGI--DVRLNAECIRVERD----------------GDGIAVGLDCNGGA--PEITGSHILVAVG---RVPNT 273 (463)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEc----------------CCEEEEEEEeCCCc--eEEEeCEEEECcC---CCcCC
Confidence 77778888888 89999999999862 22334554432211 2689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 274 ~ 274 (463)
T PRK06370 274 D 274 (463)
T ss_pred C
Confidence 4
No 193
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.36 E-value=2.8e-06 Score=86.42 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=74.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+.+. . ..+++..
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~--~~~~~~~ 190 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-------------------------------N--APPPVQR 190 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh-------------------------------h--cCHHHHH
Confidence 46899999999999999999 88999999997654210 0 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++....++.++ .++++++|++++. ++...+.+.++. ++.+|.||+|+|. .|+.
T Consensus 191 ~l~~~l~~~GV--~i~~~~~V~~i~~-----------------~~~~~v~l~~g~-----~i~aD~Vv~a~G~---~pn~ 243 (396)
T PRK09754 191 YLLQRHQQAGV--RILLNNAIEHVVD-----------------GEKVELTLQSGE-----TLQADVVIYGIGI---SAND 243 (396)
T ss_pred HHHHHHHHCCC--EEEeCCeeEEEEc-----------------CCEEEEEECCCC-----EEECCEEEECCCC---Chhh
Confidence 77777888888 8999999999875 223445555543 7899999999994 4553
No 194
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.35 E-value=2.6e-06 Score=84.10 Aligned_cols=40 Identities=48% Similarity=0.722 Sum_probs=34.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCcccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGGIWK 42 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG~w~ 42 (511)
...+|||||||.|||+||.+| .| .+++|+|..+++||.-+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 346899999999999999999 44 58999999999999544
No 195
>PRK06116 glutathione reductase; Validated
Probab=98.34 E-value=9.8e-06 Score=83.99 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=76.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. .. ...++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 212 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL--------------------------------RG--FDPDIRE 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999875431 11 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++... ++.+.+.+.++. ++.+|.||+|+| ..|+.
T Consensus 213 ~l~~~L~~~GV--~i~~~~~V~~i~~~~---------------~g~~~v~~~~g~-----~i~~D~Vv~a~G---~~p~~ 267 (450)
T PRK06116 213 TLVEEMEKKGI--RLHTNAVPKAVEKNA---------------DGSLTLTLEDGE-----TLTVDCLIWAIG---REPNT 267 (450)
T ss_pred HHHHHHHHCCc--EEECCCEEEEEEEcC---------------CceEEEEEcCCc-----EEEeCEEEEeeC---CCcCC
Confidence 77778888888 899999999998621 333556655543 789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 268 ~ 268 (450)
T PRK06116 268 D 268 (450)
T ss_pred C
Confidence 5
No 196
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.34 E-value=3.7e-06 Score=91.32 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+||+|||||++|+++|.+| .|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 5999999999999999999 89999999997644
No 197
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=1.4e-05 Score=83.06 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll--------------------------------~~--~d~e~~~ 215 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL--------------------------------PG--EDEDIAH 215 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------cc--ccHHHHH
Confidence 36899999999999999998 789999999976541 11 1356777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. +.. +.+... +...++.||.||+|+| ..|+.
T Consensus 216 ~l~~~L~~~GI--~i~~~~~V~~i~~~----------------~~~--v~~~~~--g~~~~i~~D~vivA~G---~~p~~ 270 (458)
T PRK06912 216 ILREKLENDGV--KIFTGAALKGLNSY----------------KKQ--ALFEYE--GSIQEVNAEFVLVSVG---RKPRV 270 (458)
T ss_pred HHHHHHHHCCC--EEEECCEEEEEEEc----------------CCE--EEEEEC--CceEEEEeCEEEEecC---CccCC
Confidence 77877888888 89999999999862 222 333332 2223689999999999 46665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 271 ~ 271 (458)
T PRK06912 271 Q 271 (458)
T ss_pred C
Confidence 4
No 198
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.33 E-value=5.4e-06 Score=86.05 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
...+...+.+.+++.|. .++++++|++++.. +++.|.+++.+..++...++.+|+||+|+|..
T Consensus 177 p~~l~~aL~~~a~~~Gv--~i~~~t~V~~i~~~---------------~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGT--TIRFGHEVRNLKRQ---------------SDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEc---------------CCCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence 34455555555666677 89999999999872 14568887654333333368999999999987
Q ss_pred C
Q 010421 156 G 156 (511)
Q Consensus 156 ~ 156 (511)
+
T Consensus 240 s 240 (483)
T TIGR01320 240 A 240 (483)
T ss_pred h
Confidence 4
No 199
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.32 E-value=5.9e-06 Score=84.57 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=35.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
..+||+|||||+.|+.+|..+ .|++|+++|+++-..|+-.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 568999999999999999999 9999999999887766543
No 200
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.32 E-value=7.8e-06 Score=84.40 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=73.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ..+++.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 202 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL--------------------------------PR--EEPSVAA 202 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC--------------------------------CC--CCHHHHH
Confidence 46899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++...+. .++. ++.+|.||+|+| ..|+.
T Consensus 203 ~~~~~l~~~GI--~i~~~~~V~~i~~~----------------~~~v~v~-~~g~-----~i~~D~viva~G---~~p~~ 255 (438)
T PRK07251 203 LAKQYMEEDGI--TFLLNAHTTEVKND----------------GDQVLVV-TEDE-----TYRFDALLYATG---RKPNT 255 (438)
T ss_pred HHHHHHHHcCC--EEEcCCEEEEEEec----------------CCEEEEE-ECCe-----EEEcCEEEEeeC---CCCCc
Confidence 77777888888 89999999999862 2223332 2222 789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 256 ~ 256 (438)
T PRK07251 256 E 256 (438)
T ss_pred c
Confidence 4
No 201
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.32 E-value=9.1e-06 Score=84.48 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=76.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..+ .|.+|+++|+.+.+. +. ...++..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il--------------------------------~~--~d~~~~~ 219 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC--------------------------------PG--TDTETAK 219 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC--------------------------------CC--CCHHHHH
Confidence 47899999999999999998 899999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|++++.. ++...+.+.+..++....+.+|.||+|+| ..|+.
T Consensus 220 ~l~~~l~~~gV--~i~~~~~V~~i~~~----------------~~~v~v~~~~~~~g~~~~i~~D~vi~a~G---~~pn~ 278 (466)
T PRK06115 220 TLQKALTKQGM--KFKLGSKVTGATAG----------------ADGVSLTLEPAAGGAAETLQADYVLVAIG---RRPYT 278 (466)
T ss_pred HHHHHHHhcCC--EEEECcEEEEEEEc----------------CCeEEEEEEEcCCCceeEEEeCEEEEccC---Ccccc
Confidence 77777788888 89999999999862 23345555432222234789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 279 ~ 279 (466)
T PRK06115 279 Q 279 (466)
T ss_pred c
Confidence 4
No 202
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.31 E-value=1.8e-06 Score=85.47 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=68.6
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEE-cCCCCcCccccCCCcCceeccC----------CCCcc---------ccCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVF-EASDSIGGIWKSCSYNSTKLQS----------HRSDY---------EFTDF 63 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~-e~~~~~GG~w~~~~~~~~~~~~----------~~~~~---------~~~~~ 63 (511)
||+|||||.||+.||..+ .|.+|+++ ++.+.+|..-.. |++...- -...| +|...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cn---psigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCN---PSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS---SEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccch---hhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 799999999999999999 99999999 555555532211 1111110 00000 00000
Q ss_pred ----CCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCC
Q 010421 64 ----PWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSN 138 (511)
Q Consensus 64 ----~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 138 (511)
..+.+....-..+..+..++++.++.. ++ . .+..+|+++...+ +..+-|.+.++.
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl--~-i~~~~V~~l~~e~---------------~~v~GV~~~~g~-- 137 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNL--T-IIQGEVTDLIVEN---------------GKVKGVVTKDGE-- 137 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTE--E-EEES-EEEEEECT---------------TEEEEEEETTSE--
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCe--E-EEEcccceEEecC---------------CeEEEEEeCCCC--
Confidence 000010112346788888888888774 34 3 3578999998731 222335554443
Q ss_pred ceeEEEeCEEEEeeccc
Q 010421 139 SIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 139 ~~~~~~~d~vVlAtG~~ 155 (511)
.+.+|.||+|||.+
T Consensus 138 ---~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 138 ---EIEADAVVLATGTF 151 (392)
T ss_dssp ---EEEECEEEE-TTTG
T ss_pred ---EEecCEEEEecccc
Confidence 78999999999964
No 203
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.31 E-value=5.9e-06 Score=82.14 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=91.5
Q ss_pred CeEEEECCCHHHHHHHHhc----c-----------CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL----R-----------HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRD 69 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~-----------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (511)
-+|+|||||+.|+..|-+| . .++|+|+|+.+.+.
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 3799999999999999998 1 14899999987651
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEE
Q 010421 70 DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLV 149 (511)
Q Consensus 70 ~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 149 (511)
+.| .+++..|.+++.++.|+ .+++++.|++|+.. .|++.+++. ++.++.+|
T Consensus 205 -p~~--~~~l~~~a~~~L~~~GV--~v~l~~~Vt~v~~~--------------------~v~~~~g~~----~I~~~tvv 255 (405)
T COG1252 205 -PMF--PPKLSKYAERALEKLGV--EVLLGTPVTEVTPD--------------------GVTLKDGEE----EIPADTVV 255 (405)
T ss_pred -cCC--CHHHHHHHHHHHHHCCC--EEEcCCceEEECCC--------------------cEEEccCCe----eEecCEEE
Confidence 222 35778899999999999 99999999999972 277777651 59999999
Q ss_pred EeecccCCCCCCCCCCCCCCCC-cccceEEeccccCccchhhhhhccCCCcEEEECCCC
Q 010421 150 VCTGKYGDVPIIPAFPNNKGPE-VFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKK 207 (511)
Q Consensus 150 lAtG~~~~~p~~p~~~~~~g~~-~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~ 207 (511)
.|+|.. ..|-.-.+. |.+ .-.|+++-...... .....|-++|-..
T Consensus 256 WaaGv~-a~~~~~~l~---~~e~dr~Grl~V~~~L~~---------~~~~~IFa~GD~A 301 (405)
T COG1252 256 WAAGVR-ASPLLKDLS---GLETDRRGRLVVNPTLQV---------PGHPDIFAAGDCA 301 (405)
T ss_pred EcCCCc-CChhhhhcC---hhhhccCCCEEeCCCccc---------CCCCCeEEEeccc
Confidence 999976 334333321 222 22355554443332 2345688888543
No 204
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.30 E-value=1.3e-05 Score=83.27 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=75.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ...++.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 220 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL--------------------------------SF--LDDEISD 220 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------Cc--CCHHHHH
Confidence 46899999999999999999 899999999976541 11 1345677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .+.++++|++++.. ++.+.+++.++. ++.+|.||+|+| ..|+.
T Consensus 221 ~l~~~l~~~gI--~v~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~i~~D~vi~a~G---~~p~~ 274 (461)
T PRK05249 221 ALSYHLRDSGV--TIRHNEEVEKVEGG----------------DDGVIVHLKSGK-----KIKADCLLYANG---RTGNT 274 (461)
T ss_pred HHHHHHHHcCC--EEEECCEEEEEEEe----------------CCeEEEEECCCC-----EEEeCEEEEeec---CCccc
Confidence 77777778888 88999999999862 334556554443 789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 275 ~ 275 (461)
T PRK05249 275 D 275 (461)
T ss_pred c
Confidence 4
No 205
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.30 E-value=3.3e-06 Score=87.70 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=29.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~ 35 (511)
..||+|||||++|+++|.+| . |.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 46999999999999999999 4 89999999964
No 206
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.29 E-value=7.5e-06 Score=86.93 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
...||+|||+|.||++||..+ .|.+|+|+||....+|
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 357999999999999999999 8899999999765544
No 207
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.29 E-value=1e-05 Score=86.36 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
|....||+|||+|.||++||..+ .+.+|+|+||....+|
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~~~g 41 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRS 41 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 33457999999999999999999 5589999999765443
No 208
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.29 E-value=8.2e-06 Score=84.82 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 78 EILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 78 ~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.+.+.+.+.+++.+ + .+.++++|++++.. +++.|.|++.+..++...++.+++||+|+|..+
T Consensus 184 ~l~~aL~~~a~~~Ggv--~i~~~teV~~I~~~---------------~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 184 ALTRQLVGYLQKQGNF--ELQLGHEVRDIKRN---------------DDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHhCCCe--EEEeCCEEEEEEEC---------------CCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 44455555566655 5 78999999999873 155688887653223223589999999999874
No 209
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.26 E-value=1.3e-05 Score=86.14 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
.+||+|||||.|||+||..+ .|.+|+|+|+...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 46999999999999999999 799999999866654
No 210
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.25 E-value=1e-05 Score=86.76 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..+||+|||||+.|+++|..| .|++|+|+|+++-.+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 348999999999999999999 9999999999754434
No 211
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.25 E-value=5.5e-06 Score=85.73 Aligned_cols=39 Identities=36% Similarity=0.445 Sum_probs=34.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--c----CCCcEEEcCCCCcCcccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R----HHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~----g~~v~v~e~~~~~GG~w~ 42 (511)
.++++|||||.|||+||..| . |.+|+|+|+++.+||...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 47899999999999999999 2 689999999999999654
No 212
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.25 E-value=1.4e-05 Score=82.37 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|++|+.+|..| .|.+|+++++.+.+.. .. ...++..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-------------------------------~~--~~~~~~~ 183 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-------------------------------KL--FDEEMNQ 183 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------cc--cCHHHHH
Confidence 36899999999999999999 7889999998754310 11 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .+.++++|.+++. ++.. +.+.+++ ++.||.||+|+|. .|+.
T Consensus 184 ~~~~~l~~~gV--~v~~~~~v~~i~~-----------------~~~~-v~~~~g~-----~i~~D~vi~a~G~---~p~~ 235 (427)
T TIGR03385 184 IVEEELKKHEI--NLRLNEEVDSIEG-----------------EERV-KVFTSGG-----VYQADMVILATGI---KPNS 235 (427)
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEec-----------------CCCE-EEEcCCC-----EEEeCEEEECCCc---cCCH
Confidence 78888888888 8999999999975 2222 3444443 7899999999994 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
+
T Consensus 236 ~ 236 (427)
T TIGR03385 236 E 236 (427)
T ss_pred H
Confidence 3
No 213
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.24 E-value=8.1e-06 Score=86.75 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+..+|+|||||++||++|..| .|++|+|||+..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 457899999999999999999 999999999965
No 214
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.24 E-value=2.8e-05 Score=80.39 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=75.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. ..+ .+++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il--------------------------------~~~--d~~~~~ 211 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL--------------------------------RSF--DSMISE 211 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------------ccc--CHHHHH
Confidence 36899999999999999999 889999999976541 111 345667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++... ++...+.+.++. ..+.+|.||+|+| ..|+.
T Consensus 212 ~~~~~l~~~gI--~i~~~~~v~~i~~~~---------------~~~~~v~~~~g~----~~i~~D~vi~a~G---~~pn~ 267 (450)
T TIGR01421 212 TITEEYEKEGI--NVHKLSKPVKVEKTV---------------EGKLVIHFEDGK----SIDDVDELIWAIG---RKPNT 267 (450)
T ss_pred HHHHHHHHcCC--EEEcCCEEEEEEEeC---------------CceEEEEECCCc----EEEEcCEEEEeeC---CCcCc
Confidence 77777778888 899999999998621 232345554431 2689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 268 ~ 268 (450)
T TIGR01421 268 K 268 (450)
T ss_pred c
Confidence 4
No 215
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.24 E-value=2.2e-05 Score=83.86 Aligned_cols=65 Identities=9% Similarity=-0.013 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++..+...|.+.+.+.++ .+..++.++++.... +++ .-|.+.+..+++...+.++.||+|||
T Consensus 146 tG~~l~~~L~~~~~~~gi--~i~~~~~~~~Li~~~---------------~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 208 (591)
T PRK07057 146 TGHALLHTLYQQNVAAKT--QFFVEWMALDLIRDA---------------DGDVLGVTALEMETGDVYILEAKTTLFATG 208 (591)
T ss_pred ChHHHHHHHHHHHHhcCC--EEEeCcEEEEEEEcC---------------CCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence 456777778777777787 888999999887621 222 22333333345555788999999999
Q ss_pred ccC
Q 010421 154 KYG 156 (511)
Q Consensus 154 ~~~ 156 (511)
.++
T Consensus 209 G~~ 211 (591)
T PRK07057 209 GAG 211 (591)
T ss_pred Ccc
Confidence 873
No 216
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.23 E-value=1.3e-05 Score=82.79 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=74.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..+ .|.+|+++++.+.+. +. ..+++.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 211 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL--------------------------------RG--FDDDMRA 211 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999865431 11 1246667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++...+.+.++. ++.+|.||+|+| ..|+.
T Consensus 212 ~l~~~l~~~gV--~i~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~i~~D~viva~G---~~pn~ 265 (446)
T TIGR01424 212 LLARNMEGRGI--RIHPQTSLTSITKT----------------DDGLKVTLSHGE-----EIVADVVLFATG---RSPNT 265 (446)
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEc----------------CCeEEEEEcCCc-----EeecCEEEEeeC---CCcCC
Confidence 77777888888 89999999999862 223455554443 789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 266 ~ 266 (446)
T TIGR01424 266 K 266 (446)
T ss_pred C
Confidence 3
No 217
>PRK07846 mycothione reductase; Reviewed
Probab=98.23 E-value=2.2e-05 Score=81.14 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll--------------------------------~~--~d~~~~~ 211 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL--------------------------------RH--LDDDISE 211 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999976541 11 1234555
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+....+ .++ .++++++|++++.. ++...+.+.++. ++.+|.||+|+| ..|+.
T Consensus 212 ~l~~l~~-~~v--~i~~~~~v~~i~~~----------------~~~v~v~~~~g~-----~i~~D~vl~a~G---~~pn~ 264 (451)
T PRK07846 212 RFTELAS-KRW--DVRLGRNVVGVSQD----------------GSGVTLRLDDGS-----TVEADVLLVATG---RVPNG 264 (451)
T ss_pred HHHHHHh-cCe--EEEeCCEEEEEEEc----------------CCEEEEEECCCc-----EeecCEEEEEEC---CccCc
Confidence 5555443 456 78899999999862 223345544332 799999999999 45666
Q ss_pred CC
Q 010421 162 PA 163 (511)
Q Consensus 162 p~ 163 (511)
..
T Consensus 265 ~~ 266 (451)
T PRK07846 265 DL 266 (451)
T ss_pred cc
Confidence 54
No 218
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=1.3e-05 Score=84.80 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=79.5
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCC-cCccccC--CCcCce--eccCCC----------------------
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDS-IGGIWKS--CSYNST--KLQSHR---------------------- 55 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~-~GG~w~~--~~~~~~--~~~~~~---------------------- 55 (511)
..||+|||+|.||++||..+ .|.+|+|+||... .||.-.. ..+... .-+++.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~~ 86 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEAERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEIL 86 (543)
T ss_pred ccCEEEECccHHHHHHHHHHhcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 47999999999999999999 9999999999754 4442111 000000 000000
Q ss_pred --------CccccCCCCCCCCC----------CCCC--------CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcC
Q 010421 56 --------SDYEFTDFPWPNRD----------DPGF--------PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTG 109 (511)
Q Consensus 56 --------~~~~~~~~~~~~~~----------~~~~--------~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~ 109 (511)
..+.--..+|.... ...+ .++.++...|.+.+++.++ .+.++++|+++...+
T Consensus 87 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~t~v~~Li~~~ 164 (543)
T PRK06263 87 VKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERI--KILEEVMAIKLIVDE 164 (543)
T ss_pred HHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCC--EEEeCeEeeeeEEeC
Confidence 00000012221100 0001 1356777888887877777 899999999987621
Q ss_pred CCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 110 SLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 110 ~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++ ..-+...+..+++...+.++.||+|||.+
T Consensus 165 ---------------~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 165 ---------------NREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred ---------------CcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 22 11233333223445578999999999976
No 219
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.23 E-value=9.6e-07 Score=91.09 Aligned_cols=41 Identities=39% Similarity=0.636 Sum_probs=37.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+.++|+|||||+|||+||++| .|++|+|+|.++++||.-+.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEE
Confidence 357999999999999999999 99999999999999996554
No 220
>PLN02985 squalene monooxygenase
Probab=98.23 E-value=1.9e-05 Score=82.71 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.+||+|||||++|+++|..| .|++|+|+|+..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 47999999999999999999 899999999974
No 221
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.22 E-value=1.8e-05 Score=84.43 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=30.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
||+|||+|.||++||..+ .|.+|+|+||....+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999 8899999999765543
No 222
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.21 E-value=1.6e-05 Score=85.15 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~ 37 (511)
.+||+|||+|.|||+||..+ . |.+|+|+||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 36999999999999999999 5 8999999997643
No 223
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=1.5e-05 Score=84.88 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG 39 (511)
..+||+|||||.||++||.++ . +.+|+|+||....||
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 457999999999999999999 3 489999999765553
No 224
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.20 E-value=1e-05 Score=83.97 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+||+|||||.|||+||..+ .|.+|+|+||....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 6999999999999999999 88999999997543
No 225
>PRK08275 putative oxidoreductase; Provisional
Probab=98.20 E-value=8.4e-06 Score=86.52 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++..+.+.|...+++.++ .+.+++.|+++.... +++. -+...+..+++...+.++.||+|||
T Consensus 135 ~G~~i~~~L~~~~~~~gv--~i~~~~~v~~Li~~~---------------~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG 197 (554)
T PRK08275 135 EGHDIKKVLYRQLKRARV--LITNRIMATRLLTDA---------------DGRVAGALGFDCRTGEFLVIRAKAVILCCG 197 (554)
T ss_pred ChHHHHHHHHHHHHHCCC--EEEcceEEEEEEEcC---------------CCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence 466788888888888888 899999999997621 2222 1222232234445688999999999
Q ss_pred cc
Q 010421 154 KY 155 (511)
Q Consensus 154 ~~ 155 (511)
.+
T Consensus 198 G~ 199 (554)
T PRK08275 198 AA 199 (554)
T ss_pred Cc
Confidence 76
No 226
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.20 E-value=5.1e-05 Score=71.12 Aligned_cols=34 Identities=15% Similarity=0.366 Sum_probs=28.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~ 36 (511)
+.++|+|||||.+|+.+|..+ ..-+|.|+|..++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 457899999999999999999 3347999998764
No 227
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.19 E-value=2.1e-05 Score=82.23 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEee
Q 010421 75 SYTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
++..+...|.+.+++ .++ .+.++++|+++... ++... |.+.+. +....+.++.||+||
T Consensus 126 ~G~~l~~~L~~~~~~~~gi--~i~~~~~v~~l~~~----------------~g~v~Gv~~~~~--~~~~~i~A~~VVlAt 185 (488)
T TIGR00551 126 TGREVITTLVKKALNHPNI--RIIEGENALDLLIE----------------TGRVVGVWVWNR--ETVETCHADAVVLAT 185 (488)
T ss_pred CHHHHHHHHHHHHHhcCCc--EEEECeEeeeeecc----------------CCEEEEEEEEEC--CcEEEEEcCEEEECC
Confidence 456777888877776 577 88999999998762 23222 444443 223468999999999
Q ss_pred cccC
Q 010421 153 GKYG 156 (511)
Q Consensus 153 G~~~ 156 (511)
|.++
T Consensus 186 GG~~ 189 (488)
T TIGR00551 186 GGAG 189 (488)
T ss_pred Cccc
Confidence 9874
No 228
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.19 E-value=1.9e-05 Score=81.81 Aligned_cols=99 Identities=28% Similarity=0.320 Sum_probs=73.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+. ...+ .+++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~~--~~~~~~ 195 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------PDSF--DKEITD 195 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------------chhc--CHHHHH
Confidence 46899999999999999999 789999999865431 0111 357788
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+.+++.++ .++++++|++++.. ++.+.+.. ++. ++.||.||+|+|. .|+.
T Consensus 196 ~l~~~l~~~gI--~v~~~~~v~~i~~~----------------~~~~~v~~-~~~-----~i~~d~vi~a~G~---~p~~ 248 (444)
T PRK09564 196 VMEEELRENGV--ELHLNEFVKSLIGE----------------DKVEGVVT-DKG-----EYEADVVIVATGV---KPNT 248 (444)
T ss_pred HHHHHHHHCCC--EEEcCCEEEEEecC----------------CcEEEEEe-CCC-----EEEcCEEEECcCC---CcCH
Confidence 88888888998 89999999999641 22223332 222 6899999999994 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
+
T Consensus 249 ~ 249 (444)
T PRK09564 249 E 249 (444)
T ss_pred H
Confidence 3
No 229
>PRK07121 hypothetical protein; Validated
Probab=98.19 E-value=8.5e-06 Score=85.38 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=33.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
.+||+|||+|.+|++||.++ .|.+|+|+||....||.
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 47999999999999999999 89999999998877763
No 230
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.18 E-value=1.5e-05 Score=81.75 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=29.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
||+|||||.+|+++|.+| .|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 899999999999999999 89999999997544
No 231
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.18 E-value=1.9e-05 Score=84.81 Aligned_cols=35 Identities=29% Similarity=0.204 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
.+||+|||+|.|||+||..+ .|.+|+|+||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 46999999999999999999 889999999986554
No 232
>PLN02507 glutathione reductase
Probab=98.16 E-value=1.9e-05 Score=82.64 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=75.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+++.+.+- +. ...++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 248 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL--------------------------------RG--FDDEMRA 248 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC--------------------------------cc--cCHHHHH
Confidence 36899999999999999998 889999999875431 11 1356777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|.+++.. ++...+.+.++. ++.+|.|++|+| ..|+.
T Consensus 249 ~l~~~l~~~GI--~i~~~~~V~~i~~~----------------~~~~~v~~~~g~-----~i~~D~vl~a~G---~~pn~ 302 (499)
T PLN02507 249 VVARNLEGRGI--NLHPRTNLTQLTKT----------------EGGIKVITDHGE-----EFVADVVLFATG---RAPNT 302 (499)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEe----------------CCeEEEEECCCc-----EEEcCEEEEeec---CCCCC
Confidence 88888888888 89999999999862 233445443332 699999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 303 ~ 303 (499)
T PLN02507 303 K 303 (499)
T ss_pred C
Confidence 4
No 233
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.16 E-value=2.5e-05 Score=83.66 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++..+...|.+.+.+.++ .+..++.++++.... +++.. |...+..+++.+.+.++.||+|||
T Consensus 164 tG~~i~~~L~~~a~~~gv--~i~~~~~~~~Li~~~---------------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 164 TGHAMLHTLYGQSLKYDC--NFFIEYFALDLIMDE---------------DGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred cHHHHHHHHHHHHHhCCC--EEEeceEEEEEEECC---------------CCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 466788888888888887 889999999977511 23221 333333345566789999999999
Q ss_pred cc
Q 010421 154 KY 155 (511)
Q Consensus 154 ~~ 155 (511)
.+
T Consensus 227 G~ 228 (617)
T PTZ00139 227 GY 228 (617)
T ss_pred CC
Confidence 76
No 234
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.16 E-value=2e-05 Score=81.23 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
..+|+|||||+.|+.+|..| .|.+|+++++.+.+.. . ..+++.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~--------------------------------~--~d~~~~~ 193 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK--------------------------------L--MDADMNQ 193 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch--------------------------------h--cCHHHHH
Confidence 36899999999999999999 8899999999765421 1 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++. . .|++.++. .+.+|.||+|+| ..|+.
T Consensus 194 ~l~~~l~~~gI--~i~~~~~v~~i~~-----------------~---~v~~~~g~-----~~~~D~vl~a~G---~~pn~ 243 (438)
T PRK13512 194 PILDELDKREI--PYRLNEEIDAING-----------------N---EVTFKSGK-----VEHYDMIIEGVG---THPNS 243 (438)
T ss_pred HHHHHHHhcCC--EEEECCeEEEEeC-----------------C---EEEECCCC-----EEEeCEEEECcC---CCcCh
Confidence 77777888888 8999999999864 1 36665543 689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 244 ~ 244 (438)
T PRK13512 244 K 244 (438)
T ss_pred H
Confidence 4
No 235
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.16 E-value=1.8e-05 Score=80.27 Aligned_cols=38 Identities=37% Similarity=0.546 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
|++.+||+|||||++|+++|.+| .|.+|+++|+....+
T Consensus 1 ~~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 56789999999999999999999 888999999976543
No 236
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.15 E-value=2.3e-05 Score=81.54 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=74.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++++|||+|+.|+.+|..| .|.+|+++++.+.+. +.+ ..++.++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~~--d~~~~~~ 223 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL--------------------------------PGE--DADAAEV 223 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC--------------------------------CCC--CHHHHHH
Confidence 5899999999999999998 889999999976541 111 2456677
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP 162 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p 162 (511)
+....++.++ .+.++++|.+++.. ++...+.+.++. ++.+|.||+|+| ..|+..
T Consensus 224 l~~~L~~~gV--~i~~~~~v~~v~~~----------------~~~~~v~~~~g~-----~l~~D~vl~a~G---~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGM--TVLKRSRAESVERT----------------GDGVVVTLTDGR-----TVEGSHALMAVG---SVPNTA 277 (466)
T ss_pred HHHHHHHCCc--EEEcCCEEEEEEEe----------------CCEEEEEECCCc-----EEEecEEEEeec---CCcCCC
Confidence 8888888888 89999999999762 233455554432 789999999999 456654
No 237
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.15 E-value=2.5e-05 Score=80.78 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=73.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +.+ ..++.+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~~--~~~~~~ 203 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL--------------------------------PRE--DRDIAD 203 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--------------------------------CCc--CHHHHH
Confidence 46899999999999999999 889999999975431 111 245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+.+++.++ .++++++|.+++.. ++.+.+...++ ++.+|.||+|+| ..|+.
T Consensus 204 ~l~~~l~~~gV--~v~~~~~v~~i~~~----------------~~~v~v~~~~g------~i~~D~vl~a~G---~~pn~ 256 (441)
T PRK08010 204 NIATILRDQGV--DIILNAHVERISHH----------------ENQVQVHSEHA------QLAVDALLIASG---RQPAT 256 (441)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEc----------------CCEEEEEEcCC------eEEeCEEEEeec---CCcCC
Confidence 77888888888 89999999999862 23334433222 578999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 257 ~ 257 (441)
T PRK08010 257 A 257 (441)
T ss_pred C
Confidence 3
No 238
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.15 E-value=2.6e-05 Score=81.50 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=72.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc-CCCcC----ce---eccCCCCc---------cccCCCC-
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK-SCSYN----ST---KLQSHRSD---------YEFTDFP- 64 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~-~~~~~----~~---~~~~~~~~---------~~~~~~~- 64 (511)
+||+|||||++|+.+|..+ .|.+|+|+|++...+|... ..... +. .++..... .+|....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 5899999999999999999 7999999998754332211 00000 00 00000000 0011000
Q ss_pred --CCC-CCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 65 --WPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 65 --~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
-|. +....-..+..+...++..+++.+. ...+..+|+.+.... ++....|.+.++.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pg--V~Ile~~Vv~li~e~--------------~g~V~GV~t~~G~----- 139 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPN--LSLFQGEVEDLILED--------------NDEIKGVVTQDGL----- 139 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCC--cEEEEeEEEEEEEec--------------CCcEEEEEECCCC-----
Confidence 000 0011123556677778777777632 233556787776521 0223345555543
Q ss_pred EEEeCEEEEeeccc
Q 010421 142 RYGFEFLVVCTGKY 155 (511)
Q Consensus 142 ~~~~d~vVlAtG~~ 155 (511)
.+.||.||+|||.+
T Consensus 140 ~I~Ad~VILATGtf 153 (617)
T TIGR00136 140 KFRAKAVIITTGTF 153 (617)
T ss_pred EEECCEEEEccCcc
Confidence 79999999999976
No 239
>PRK14727 putative mercuric reductase; Provisional
Probab=98.14 E-value=5.5e-05 Score=78.93 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=72.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++. .+ ... ..+++.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~--------------------------------l~~--~d~~~~~ 232 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TL--------------------------------LFR--EDPLLGE 232 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CC--------------------------------CCc--chHHHHH
Confidence 36899999999999999999 88999999874 22 011 1345677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++.+.+...++ ++.+|.||+|+| ..|+.
T Consensus 233 ~l~~~L~~~GV--~i~~~~~V~~i~~~----------------~~~~~v~~~~g------~i~aD~VlvA~G---~~pn~ 285 (479)
T PRK14727 233 TLTACFEKEGI--EVLNNTQASLVEHD----------------DNGFVLTTGHG------ELRAEKLLISTG---RHANT 285 (479)
T ss_pred HHHHHHHhCCC--EEEcCcEEEEEEEe----------------CCEEEEEEcCC------eEEeCEEEEccC---CCCCc
Confidence 78888888888 89999999999862 23344443222 688999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 286 ~ 286 (479)
T PRK14727 286 H 286 (479)
T ss_pred c
Confidence 4
No 240
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.14 E-value=2.5e-05 Score=81.23 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=73.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+. +. ..+++.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il--------------------------------~~--~d~~~~~ 219 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI--------------------------------PA--ADKDIVK 219 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC--------------------------------Cc--CCHHHHH
Confidence 36899999999999999999 899999999976541 11 1245666
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++. + .+.++++|++++.. ++...+.+.+++ +...++.+|.||+|+| ..|+.
T Consensus 220 ~~~~~l~~~-v--~i~~~~~v~~i~~~----------------~~~~~v~~~~~~-~~~~~i~~D~vi~a~G---~~pn~ 276 (471)
T PRK06467 220 VFTKRIKKQ-F--NIMLETKVTAVEAK----------------EDGIYVTMEGKK-APAEPQRYDAVLVAVG---RVPNG 276 (471)
T ss_pred HHHHHHhhc-e--EEEcCCEEEEEEEc----------------CCEEEEEEEeCC-CcceEEEeCEEEEeec---ccccC
Confidence 666666554 5 78899999999862 233455554432 2223689999999999 46666
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 277 ~ 277 (471)
T PRK06467 277 K 277 (471)
T ss_pred C
Confidence 4
No 241
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.13 E-value=2.3e-06 Score=89.19 Aligned_cols=52 Identities=27% Similarity=0.467 Sum_probs=43.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSH 54 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~ 54 (511)
+.+||+|||||++||+||..| .|++|+|+||++.+||..+...+.+.+.++-
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G 55 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTG 55 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccC
Confidence 468999999999999999999 9999999999999999776645555555443
No 242
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.13 E-value=4.5e-05 Score=81.56 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++..+...|.+.+.+.++ .+.+++.|+++...+ +++. -|...+..+++...+.++.||+|||
T Consensus 147 tG~~i~~~L~~~~~~~gi--~i~~~~~v~~Li~~~---------------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 209 (598)
T PRK09078 147 TGHAILHTLYQQSLKHNA--EFFIEYFALDLIMDD---------------GGVCRGVVAWNLDDGTLHRFRAHMVVLATG 209 (598)
T ss_pred CHHHHHHHHHHHHhhcCC--EEEEeEEEEEEEEcC---------------CCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 456777788887877777 889999999987621 2321 1333333345566789999999999
Q ss_pred cc
Q 010421 154 KY 155 (511)
Q Consensus 154 ~~ 155 (511)
.+
T Consensus 210 G~ 211 (598)
T PRK09078 210 GY 211 (598)
T ss_pred CC
Confidence 77
No 243
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.13 E-value=2.4e-05 Score=79.98 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c-CC-CcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R-HH-NPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~-g~-~v~v~e~~~ 35 (511)
..+||+|||||..|+++|.+| . |. +|+|+|++.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 457999999999999999999 4 74 899999965
No 244
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.13 E-value=3.2e-05 Score=81.13 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.||++||.++ .+.+|+|+||....||
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCCCCC
Confidence 57999999999999999999 8899999999876555
No 245
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.12 E-value=3.8e-05 Score=81.21 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=32.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.|||+||..+ .|.+|+|+||....+|
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 47999999999999999999 7899999999876654
No 246
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.12 E-value=5.4e-05 Score=78.38 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..| .|.+|+++++.+.+. +. ..+++..
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--------------------------------~~--~d~~~~~ 214 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--------------------------------RH--LDEDISD 214 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999975441 11 1234555
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..+ .++ .++++++|.+++.. ++...+++.++. ++.+|.|++|+| ..|+.
T Consensus 215 ~l~~~~~-~gI--~i~~~~~V~~i~~~----------------~~~v~v~~~~g~-----~i~~D~vl~a~G---~~pn~ 267 (452)
T TIGR03452 215 RFTEIAK-KKW--DIRLGRNVTAVEQD----------------GDGVTLTLDDGS-----TVTADVLLVATG---RVPNG 267 (452)
T ss_pred HHHHHHh-cCC--EEEeCCEEEEEEEc----------------CCeEEEEEcCCC-----EEEcCEEEEeec---cCcCC
Confidence 5555443 356 78889999999862 233455554432 799999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 268 ~ 268 (452)
T TIGR03452 268 D 268 (452)
T ss_pred C
Confidence 4
No 247
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.12 E-value=3.2e-05 Score=80.46 Aligned_cols=100 Identities=13% Similarity=0.197 Sum_probs=74.8
Q ss_pred CCeEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
.++|+|||||+.|+.+|..+ .|.+|+|+|+.+.+. +.+ .++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--------------------------------~~~--d~~ 232 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--------------------------------RGF--DST 232 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--------------------------------ccc--CHH
Confidence 46899999999999999765 388999999976541 111 356
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.+.+.+..++.++ .++++++|++++... ++...|.+.++. ++.+|.||+|+| ..
T Consensus 233 ~~~~l~~~L~~~GI--~i~~~~~v~~i~~~~---------------~~~~~v~~~~g~-----~i~~D~vl~a~G---~~ 287 (486)
T TIGR01423 233 LRKELTKQLRANGI--NIMTNENPAKVTLNA---------------DGSKHVTFESGK-----TLDVDVVMMAIG---RV 287 (486)
T ss_pred HHHHHHHHHHHcCC--EEEcCCEEEEEEEcC---------------CceEEEEEcCCC-----EEEcCEEEEeeC---CC
Confidence 77888888888888 899999999998621 222345554433 799999999999 45
Q ss_pred CCCC
Q 010421 159 PIIP 162 (511)
Q Consensus 159 p~~p 162 (511)
|+..
T Consensus 288 Pn~~ 291 (486)
T TIGR01423 288 PRTQ 291 (486)
T ss_pred cCcc
Confidence 6654
No 248
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=5.5e-05 Score=80.72 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
++.||+|||+|.|||+||..+ .|.+|+|+||....||
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 457999999999999999999 8999999999776543
No 249
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.11 E-value=1.2e-05 Score=77.83 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=63.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--------cCCCcEEEcCCCCcCccccCC----------CcCc-------eeccCCCCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--------RHHNPVVFEASDSIGGIWKSC----------SYNS-------TKLQSHRSDY 58 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--------~g~~v~v~e~~~~~GG~w~~~----------~~~~-------~~~~~~~~~~ 58 (511)
..||+|||||||||+||.+| ..++|.|+|+...+||.-... -.|. +.+.+.+..+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~ 155 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF 155 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence 47999999999999999999 456899999999999843220 1121 1122222223
Q ss_pred ccCC----CCCCC----C-CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEE
Q 010421 59 EFTD----FPWPN----R-DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRF 107 (511)
Q Consensus 59 ~~~~----~~~~~----~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 107 (511)
.|-. +|.|. . ...-..+-.++.+||-..++.+|+ .|.-+..+.+|-.
T Consensus 156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~Gv--EiyPg~aaSevly 211 (621)
T KOG2415|consen 156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGV--EIYPGFAASEVLY 211 (621)
T ss_pred eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCc--eeccccchhheeE
Confidence 2211 11221 1 012335678899999999999987 4444444444444
No 250
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.11 E-value=4e-05 Score=81.63 Aligned_cols=38 Identities=26% Similarity=0.458 Sum_probs=34.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
...||+|||+|.+||+||..+ .|.+|+|+||.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 357999999999999999999 89999999999887764
No 251
>PRK14694 putative mercuric reductase; Provisional
Probab=98.10 E-value=8.1e-05 Score=77.50 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=70.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++...+ +. ..+++..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l---------------------------------~~--~~~~~~~ 222 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL---------------------------------SQ--EDPAVGE 222 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC---------------------------------CC--CCHHHHH
Confidence 46899999999999999999 88999999874211 11 1345667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++.+.+... +. ++.+|.||+|+| ..|+.
T Consensus 223 ~l~~~l~~~GI--~v~~~~~v~~i~~~----------------~~~~~v~~~-~~-----~i~~D~vi~a~G---~~pn~ 275 (468)
T PRK14694 223 AIEAAFRREGI--EVLKQTQASEVDYN----------------GREFILETN-AG-----TLRAEQLLVATG---RTPNT 275 (468)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEc----------------CCEEEEEEC-CC-----EEEeCEEEEccC---CCCCc
Confidence 77777888888 89999999999862 223333322 22 689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 276 ~ 276 (468)
T PRK14694 276 E 276 (468)
T ss_pred C
Confidence 4
No 252
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.10 E-value=5.8e-05 Score=80.51 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.|||+||.++ .|.+|+|+||....+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 46999999999999999999 8999999999865544
No 253
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.09 E-value=2.2e-05 Score=82.93 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
.+||+|||+|.||++||.++ .|.+|+|+||....||
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCCCC
Confidence 47999999999999999999 8999999999877665
No 254
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.08 E-value=2e-05 Score=76.84 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
..+|+|||||.+|+++|..| .|++|+|+|++.++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 46899999999999999999 99999999997765
No 255
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.08 E-value=5.1e-05 Score=81.37 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.|||+||..+ .|.+|+|+||....+|
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 36999999999999999999 7899999999875554
No 256
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.08 E-value=4e-05 Score=81.78 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC---CCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH---HNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g---~~v~v~e~~~~~GG 39 (511)
...||+|||+|.|||+||..+ .| .+|+|+||....||
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 357999999999999999999 66 89999999876554
No 257
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.07 E-value=8.6e-05 Score=78.67 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=34.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||+| +|++||..+ .|.+|+|+||.+.+||+...
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 5799999999 899999999 89999999999889985443
No 258
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.06 E-value=7e-05 Score=79.18 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.||++||..+ .+.+|+|+||....||
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCCC
Confidence 46999999999999999999 5589999999876665
No 259
>PRK12839 hypothetical protein; Provisional
Probab=98.05 E-value=9.9e-05 Score=78.40 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=35.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIW 41 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w 41 (511)
...||+|||+|.+|+++|..+ .|.+|+|+|+...+||+.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 457999999999999999999 889999999998888753
No 260
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.05 E-value=6.2e-06 Score=90.68 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=70.0
Q ss_pred eEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCc---Cccc--cCCCcCceeccCC------------CCccc--cCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSI---GGIW--KSCSYNSTKLQSH------------RSDYE--FTD 62 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~---GG~w--~~~~~~~~~~~~~------------~~~~~--~~~ 62 (511)
+|+|||||++||++|..| . |++|+|+|++... |... ..+....+....+ ...+. +.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999 4 8999999998753 3110 1100000000000 00000 000
Q ss_pred CCCCCCCCCC--CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCce
Q 010421 63 FPWPNRDDPG--FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSI 140 (511)
Q Consensus 63 ~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (511)
...... ... -..+.++.+.|.+.+.+.++ .++++++|+++...
T Consensus 82 ~~~~~~-g~~~~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i~~~-------------------------------- 126 (765)
T PRK08255 82 RRIRSG-GHGFAGIGRKRLLNILQARCEELGV--KLVFETEVPDDQAL-------------------------------- 126 (765)
T ss_pred EEEEEC-CeeEecCCHHHHHHHHHHHHHHcCC--EEEeCCccCchhhh--------------------------------
Confidence 000000 011 24678999999999988888 78898877654310
Q ss_pred eEEEeCEEEEeecccC
Q 010421 141 QRYGFEFLVVCTGKYG 156 (511)
Q Consensus 141 ~~~~~d~vVlAtG~~~ 156 (511)
...+|.||.|+|.+|
T Consensus 127 -~~~~D~VVgADG~~S 141 (765)
T PRK08255 127 -AADADLVIASDGLNS 141 (765)
T ss_pred -hcCCCEEEEcCCCCH
Confidence 246899999999875
No 261
>PTZ00058 glutathione reductase; Provisional
Probab=98.05 E-value=4.7e-05 Score=80.28 Aligned_cols=101 Identities=16% Similarity=0.291 Sum_probs=74.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+++.+.+. +.+ .+++.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--------------------------------~~~--d~~i~~ 282 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--------------------------------RKF--DETIIN 282 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--------------------------------ccC--CHHHHH
Confidence 57899999999999999999 899999999976541 111 346667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .+.++++|.+++... .+...+...++ + .++.+|.|++|+| ..|+.
T Consensus 283 ~l~~~L~~~GV--~i~~~~~V~~I~~~~---------------~~~v~v~~~~~--~--~~i~aD~VlvA~G---r~Pn~ 338 (561)
T PTZ00058 283 ELENDMKKNNI--NIITHANVEEIEKVK---------------EKNLTIYLSDG--R--KYEHFDYVIYCVG---RSPNT 338 (561)
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEecC---------------CCcEEEEECCC--C--EEEECCEEEECcC---CCCCc
Confidence 77777888888 899999999998621 22333433222 1 2689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 339 ~ 339 (561)
T PTZ00058 339 E 339 (561)
T ss_pred c
Confidence 4
No 262
>PLN02815 L-aspartate oxidase
Probab=98.04 E-value=6.7e-05 Score=79.75 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.|||+||..+ .| +|+|+||....||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 46999999999999999999 67 9999999887665
No 263
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.04 E-value=5.7e-05 Score=78.71 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=74.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
..+++|||||+.|+.+|..| .|.+|+|+++. .+. +. ..+++.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--------------------------------~~--~d~~~~~ 224 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--------------------------------RG--FDQDCAN 224 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc--------------------------------cc--cCHHHHH
Confidence 35799999999999999999 88999999873 220 11 1356777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++++..++.++ .+++++++.+++.. ++...|++.++.+ ..++.+|.||+|+| ..|+.
T Consensus 225 ~l~~~L~~~gV--~i~~~~~v~~v~~~----------------~~~~~v~~~~~~~--~~~i~~D~vl~a~G---~~pn~ 281 (484)
T TIGR01438 225 KVGEHMEEHGV--KFKRQFVPIKVEQI----------------EAKVKVTFTDSTN--GIEEEYDTVLLAIG---RDACT 281 (484)
T ss_pred HHHHHHHHcCC--EEEeCceEEEEEEc----------------CCeEEEEEecCCc--ceEEEeCEEEEEec---CCcCC
Confidence 88888888888 89999999888863 2233455544321 22689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 282 ~ 282 (484)
T TIGR01438 282 R 282 (484)
T ss_pred C
Confidence 4
No 264
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.02 E-value=0.00011 Score=76.52 Aligned_cols=102 Identities=24% Similarity=0.281 Sum_probs=72.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 214 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL--------------------------------PL--EDPEVSK 214 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--------------------------------cc--hhHHHHH
Confidence 46899999999999999998 889999999976542 10 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++. + .++++++|.+++... +...+++..++ ...++.+|.||+|+| ..|+.
T Consensus 215 ~~~~~l~~~-I--~i~~~~~v~~i~~~~---------------~~~v~~~~~~~---~~~~i~~D~vi~a~G---~~p~~ 270 (460)
T PRK06292 215 QAQKILSKE-F--KIKLGAKVTSVEKSG---------------DEKVEELEKGG---KTETIEADYVLVATG---RRPNT 270 (460)
T ss_pred HHHHHHhhc-c--EEEcCCEEEEEEEcC---------------CceEEEEEcCC---ceEEEEeCEEEEccC---CccCC
Confidence 777777666 7 789999999998621 11222322222 223689999999999 46776
Q ss_pred CC
Q 010421 162 PA 163 (511)
Q Consensus 162 p~ 163 (511)
..
T Consensus 271 ~~ 272 (460)
T PRK06292 271 DG 272 (460)
T ss_pred CC
Confidence 53
No 265
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.01 E-value=0.00012 Score=77.88 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG 39 (511)
.+||+|||+|.|||.||..+ . +.+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999 3 589999999876665
No 266
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.01 E-value=9e-05 Score=79.25 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 7 IAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 7 v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
|+|||+|.|||+||..+ .|.+|+|+||...++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 69999999999999999 789999999987443
No 267
>PRK13748 putative mercuric reductase; Provisional
Probab=98.00 E-value=5.1e-05 Score=81.04 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+++...+ .. ..+++..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l---------------------------------~~--~d~~~~~ 314 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF---------------------------------FR--EDPAIGE 314 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc---------------------------------cc--cCHHHHH
Confidence 46899999999999999999 88999999984211 11 1346677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++.+.+...++ ++.+|.||+|+| ..|+.
T Consensus 315 ~l~~~l~~~gI--~i~~~~~v~~i~~~----------------~~~~~v~~~~~------~i~~D~vi~a~G---~~pn~ 367 (561)
T PRK13748 315 AVTAAFRAEGI--EVLEHTQASQVAHV----------------DGEFVLTTGHG------ELRADKLLVATG---RAPNT 367 (561)
T ss_pred HHHHHHHHCCC--EEEcCCEEEEEEec----------------CCEEEEEecCC------eEEeCEEEEccC---CCcCC
Confidence 78888888888 89999999999862 33344433221 689999999999 46766
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 368 ~ 368 (561)
T PRK13748 368 R 368 (561)
T ss_pred C
Confidence 4
No 268
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.00 E-value=8.1e-05 Score=80.28 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
..||+|||||.|||.||..+ .|.+|+|+|+....+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 47999999999999999999 899999999876543
No 269
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.99 E-value=3.5e-05 Score=75.09 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=88.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCC---ccchhhhhhhhhhhhcCCCc-hhHHHHH
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWG---LPFFMFYSTRFSQFLHGSPN-QSLLRTL 273 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g---~p~~~~~~~r~~~~~~~~~~-~~~~~~~ 273 (511)
..|+|||+|++|+=.|..+++.+.. |+++.+.+. +-.+....| .++..... ..+++.+-|. ..++++.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~-----V~lid~~~k-~GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRR-----VLLIDKGPK-LGRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCE-----EEEEecCcc-ccceeEecCCCCcccccccc--HHHHHHhCCCcchHHHHH
Confidence 4699999999999999889887764 999998764 111111111 22222111 3445555553 2344444
Q ss_pred HHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc---
Q 010421 274 LCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG--- 349 (511)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~--- 349 (511)
+..+. ++.+-.+++.+-........-++-|... +-..+-+-++..+++.+|+++... |.+++.+.
T Consensus 76 l~~ft---~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sd--------kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f 144 (408)
T COG2081 76 LARFT---PEDFIDWVEGLGIALKEEDLGRMFPDSD--------KASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGF 144 (408)
T ss_pred HHhCC---HHHHHHHHHhcCCeeEEccCceecCCcc--------chHHHHHHHHHHHHHcCcEEEecceEEeEEecCceE
Confidence 43322 2333333333322221111112323210 011122445677888999999876 88887663
Q ss_pred -EEEcCCceeeccEEEEecCCCC
Q 010421 350 -LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 350 -v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
|.+.+|+++.||.+|+|||=..
T Consensus 145 ~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 145 RLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred EEEcCCCCEEEccEEEEecCCcC
Confidence 5667888999999999999554
No 270
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.99 E-value=0.0001 Score=78.53 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG 39 (511)
.+||+|||+|.|||+||..+ . +.+|+|+||....||
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999 3 479999999876554
No 271
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.98 E-value=7.8e-05 Score=78.08 Aligned_cols=98 Identities=18% Similarity=0.099 Sum_probs=72.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++. .+. .. ..+++.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--------------------------------~~--~d~~~~~ 226 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL--------------------------------RG--FDRQCSE 226 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc--------------------------------cc--CCHHHHH
Confidence 35899999999999999999 88999999873 220 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++...+.+.++. ++.+|.||+|+| ..|+.
T Consensus 227 ~l~~~l~~~GV--~i~~~~~v~~v~~~----------------~~~~~v~~~~g~-----~i~~D~vl~a~G---~~pn~ 280 (499)
T PTZ00052 227 KVVEYMKEQGT--LFLEGVVPINIEKM----------------DDKIKVLFSDGT-----TELFDTVLYATG---RKPDI 280 (499)
T ss_pred HHHHHHHHcCC--EEEcCCeEEEEEEc----------------CCeEEEEECCCC-----EEEcCEEEEeeC---CCCCc
Confidence 77888888888 88999999888862 222345554443 688999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 281 ~ 281 (499)
T PTZ00052 281 K 281 (499)
T ss_pred c
Confidence 4
No 272
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.97 E-value=0.00016 Score=77.09 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=33.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..||+|||+|++|++||..+ .|.+|+|+||....||.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 57999999999999999999 89999999999887764
No 273
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.95 E-value=7.3e-06 Score=85.06 Aligned_cols=39 Identities=41% Similarity=0.721 Sum_probs=35.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|||||+|||+||..| .| ++|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 4799999999999999999 56 899999999999997665
No 274
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.95 E-value=0.00022 Score=76.51 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=73.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++|+|||+|+.|+..|..| .|.+|+++|+.+.+. +. -..++.++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll--------------------------------~~--~d~eis~~ 358 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL--------------------------------PL--LDADVAKY 358 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc--------------------------------cc--CCHHHHHH
Confidence 5899999999999999988 889999999976652 11 13456677
Q ss_pred HHHHH-HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC----CC------ceeEEEeCEEEEe
Q 010421 83 LESYA-KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN----SN------SIQRYGFEFLVVC 151 (511)
Q Consensus 83 l~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~------~~~~~~~d~vVlA 151 (511)
+.... ++.++ .++++++|.+++...+ ....+|.+.+.. ++ ...++.+|.||+|
T Consensus 359 l~~~ll~~~GV--~I~~~~~V~~I~~~~~--------------~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvA 422 (659)
T PTZ00153 359 FERVFLKSKPV--RVHLNTLIEYVRAGKG--------------NQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVA 422 (659)
T ss_pred HHHHHhhcCCc--EEEcCCEEEEEEecCC--------------ceEEEEEEeccccccccccccccccceEEEcCEEEEE
Confidence 76654 56778 8999999999986210 112344433211 01 1136899999999
Q ss_pred ecccCCCCCCCC
Q 010421 152 TGKYGDVPIIPA 163 (511)
Q Consensus 152 tG~~~~~p~~p~ 163 (511)
+| ..|+...
T Consensus 423 tG---r~Pnt~~ 431 (659)
T PTZ00153 423 TG---RKPNTNN 431 (659)
T ss_pred EC---cccCCcc
Confidence 99 5677654
No 275
>PTZ00367 squalene epoxidase; Provisional
Probab=97.94 E-value=5.3e-05 Score=79.94 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+||+|||||++|+++|..| .|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 357999999999999999999 899999999975
No 276
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.94 E-value=0.00013 Score=74.83 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=70.3
Q ss_pred CeEEEECCCHHHHHHHHhc-c---------------CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL-R---------------HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNR 68 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~---------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (511)
++|+|||||+.|+..|..| . +.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 3899999999999999988 2 57899999976541
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEE
Q 010421 69 DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFL 148 (511)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 148 (511)
+.+ .+++.+++++..++.++ .++++++|.+++. + .|.+++++ ++.+|.+
T Consensus 224 --~~~--~~~~~~~~~~~L~~~gV--~v~~~~~v~~v~~-----------------~---~v~~~~g~-----~i~~d~v 272 (424)
T PTZ00318 224 --GSF--DQALRKYGQRRLRRLGV--DIRTKTAVKEVLD-----------------K---EVVLKDGE-----VIPTGLV 272 (424)
T ss_pred --ccC--CHHHHHHHHHHHHHCCC--EEEeCCeEEEEeC-----------------C---EEEECCCC-----EEEccEE
Confidence 111 24677888888888998 8999999998874 1 36666654 7999999
Q ss_pred EEeeccc
Q 010421 149 VVCTGKY 155 (511)
Q Consensus 149 VlAtG~~ 155 (511)
|+|+|..
T Consensus 273 i~~~G~~ 279 (424)
T PTZ00318 273 VWSTGVG 279 (424)
T ss_pred EEccCCC
Confidence 9999954
No 277
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.94 E-value=0.00017 Score=75.89 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+| +|++||.++ .|.+|+|+||.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5799999999 999999999 8999999999887664
No 278
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.92 E-value=6.9e-05 Score=82.83 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=74.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..| .|.+|+|+|+.+.+- + .. -.++...
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll---------------------------~----~~--ld~~~~~ 191 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM---------------------------A----EQ--LDQMGGE 191 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch---------------------------h----hh--cCHHHHH
Confidence 46899999999999999999 899999999875431 0 01 1345667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+++..++.++ .++++++|+++....+ ...-.|.+.++. ++.+|.||+|+|. .|+.
T Consensus 192 ~l~~~L~~~GV--~v~~~~~v~~I~~~~~--------------~~~~~v~~~dG~-----~i~~D~Vv~A~G~---rPn~ 247 (847)
T PRK14989 192 QLRRKIESMGV--RVHTSKNTLEIVQEGV--------------EARKTMRFADGS-----ELEVDFIVFSTGI---RPQD 247 (847)
T ss_pred HHHHHHHHCCC--EEEcCCeEEEEEecCC--------------CceEEEEECCCC-----EEEcCEEEECCCc---ccCc
Confidence 78888888898 8999999999975211 222345555554 7999999999994 5554
No 279
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.92 E-value=6e-05 Score=83.16 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=73.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..| .|.+|+|+|+.+.+.. .. -.++...
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~~--ld~~~~~ 186 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------KQ--LDQTAGR 186 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------hh--cCHHHHH
Confidence 46899999999999999999 8999999998654310 11 1235566
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+....+..++ .++++++|+++... ...-.|.+.++. ++.+|.||+|+|. .|+.
T Consensus 187 ~l~~~l~~~GV--~v~~~~~v~~i~~~----------------~~~~~v~~~dG~-----~i~~D~Vi~a~G~---~Pn~ 240 (785)
T TIGR02374 187 LLQRELEQKGL--TFLLEKDTVEIVGA----------------TKADRIRFKDGS-----SLEADLIVMAAGI---RPND 240 (785)
T ss_pred HHHHHHHHcCC--EEEeCCceEEEEcC----------------CceEEEEECCCC-----EEEcCEEEECCCC---CcCc
Confidence 77777788898 89999999888752 222345665554 7999999999994 5554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 241 ~ 241 (785)
T TIGR02374 241 E 241 (785)
T ss_pred H
Confidence 3
No 280
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.90 E-value=0.00026 Score=75.59 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=34.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..+||+|||+|.+|+++|..+ .|.+|+|+|+++.+||.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 357999999999999999999 89999999998877774
No 281
>PRK07233 hypothetical protein; Provisional
Probab=97.89 E-value=1.5e-05 Score=82.17 Aligned_cols=38 Identities=55% Similarity=0.883 Sum_probs=35.4
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+|+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 589999999999999999 89999999999999997655
No 282
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.89 E-value=9e-05 Score=75.76 Aligned_cols=96 Identities=23% Similarity=0.372 Sum_probs=74.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++++|||+|+.|+.+|..| .|++|+++|+.+.+++. .+. +++...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-------------------------------~~~--~~~~~~ 183 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-------------------------------LLD--PEVAEE 183 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-------------------------------hhh--HHHHHH
Confidence 6899999999999999999 99999999998877542 111 677888
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE--EEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE--VAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+..+.+++ .+++++++.+++... +.... +...++. .+.+|.+++++|..
T Consensus 184 ~~~~l~~~gi--~~~~~~~~~~i~~~~---------------~~~~~~~~~~~~~~-----~~~~d~~~~~~g~~ 236 (415)
T COG0446 184 LAELLEKYGV--ELLLGTKVVGVEGKG---------------NTLVVERVVGIDGE-----EIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHCCc--EEEeCCceEEEEccc---------------CcceeeEEEEeCCc-----EEEeeEEEEeeccc
Confidence 8888888887 788999999999731 11111 3334443 78999999999953
No 283
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.89 E-value=0.00025 Score=75.62 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
.+||+|||+|.+|+++|..+ .|.+|+|+|+...+||...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 46999999999999999999 8999999999888887654
No 284
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=2.5e-05 Score=73.38 Aligned_cols=84 Identities=19% Similarity=0.346 Sum_probs=57.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCC-CChHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGF-PSYTEILD 81 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (511)
+|++|||||.+|+.+|..| .|.+|.|+||++++||.+....-+...+.+-+ + . +..| .+.+.+.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk----Y-------G-pHIFHT~~~~Vwd 69 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK----Y-------G-PHIFHTDNKRVWD 69 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee----c-------c-CceeecCchHHHH
Confidence 7999999999999999988 79999999999999998776322211111100 0 0 1222 35688999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEE
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVR 106 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~ 106 (511)
|+..+.+-. .+.++|..+.
T Consensus 70 yv~~F~e~~------~Y~hrVla~~ 88 (374)
T COG0562 70 YVNQFTEFN------PYQHRVLALV 88 (374)
T ss_pred HHhhhhhhh------hhccceeEEE
Confidence 999887632 2445664433
No 285
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.89 E-value=0.00028 Score=74.90 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=33.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..||+|||+|++|+++|..+ .|++|+|+||...+||.
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 57999999999999999999 89999999998877763
No 286
>PLN02568 polyamine oxidase
Probab=97.89 E-value=1.2e-05 Score=84.36 Aligned_cols=43 Identities=40% Similarity=0.637 Sum_probs=38.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cC-----CCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RH-----HNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g-----~~v~v~e~~~~~GG~w~~ 43 (511)
|.+.+||+|||||++||+||..| .| ++|+|+|+++.+||.+..
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 45568999999999999999999 55 899999999999998765
No 287
>PLN02676 polyamine oxidase
Probab=97.88 E-value=1.5e-05 Score=82.91 Aligned_cols=50 Identities=30% Similarity=0.586 Sum_probs=42.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCcCceecc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSYNSTKLQ 52 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~ 52 (511)
..+||+|||||++||+||.+| .|. +|+|+|+++.+||.+....+++..++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d 77 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVE 77 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEe
Confidence 357999999999999999999 787 69999999999998887566655443
No 288
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.88 E-value=0.00012 Score=77.59 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=34.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..+||+|||+|.+|+++|..+ .|.+|+|+|+....||+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 357999999999999999999 89999999998777765
No 289
>PLN02268 probable polyamine oxidase
Probab=97.87 E-value=1.3e-05 Score=82.65 Aligned_cols=39 Identities=31% Similarity=0.631 Sum_probs=36.0
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.+|+|||||.|||+||+.| .|++|+|+|+++++||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 4799999999999999999 79999999999999997654
No 290
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.87 E-value=0.00018 Score=62.87 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=27.8
Q ss_pred EEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 201 AVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 201 ~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|||+|.+|+=++..|.+........+|+++.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 599999999999999998851111356999988654
No 291
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.85 E-value=0.00012 Score=68.73 Aligned_cols=36 Identities=31% Similarity=0.591 Sum_probs=32.0
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIW 41 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w 41 (511)
.|+|||+|.|||+|+..+ .+-.|+++|++..+||.-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 699999999999999999 555599999999999854
No 292
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.85 E-value=0.00028 Score=81.13 Aligned_cols=37 Identities=19% Similarity=0.458 Sum_probs=34.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..||+|||+|.||++||.++ .|.+|+|+||....||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 47999999999999999999 89999999999888875
No 293
>PLN02546 glutathione reductase
Probab=97.85 E-value=0.00013 Score=76.94 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=72.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+..|..| .+.+|+|+++.+.+. +. ..+++..
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il--------------------------------~~--~d~~~~~ 297 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL--------------------------------RG--FDEEVRD 297 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 788999999876541 11 1356677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|+++.... ++...+. ..+ ++ ...+|.||+|+|. .|+.
T Consensus 298 ~l~~~L~~~GV--~i~~~~~v~~i~~~~---------------~g~v~v~--~~~-g~--~~~~D~Viva~G~---~Pnt 352 (558)
T PLN02546 298 FVAEQMSLRGI--EFHTEESPQAIIKSA---------------DGSLSLK--TNK-GT--VEGFSHVMFATGR---KPNT 352 (558)
T ss_pred HHHHHHHHCCc--EEEeCCEEEEEEEcC---------------CCEEEEE--ECC-eE--EEecCEEEEeecc---ccCC
Confidence 78777888888 899999999997621 2322332 221 11 3458999999994 5665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 353 ~ 353 (558)
T PLN02546 353 K 353 (558)
T ss_pred C
Confidence 4
No 294
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.83 E-value=0.00019 Score=74.03 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
.+..+.+.|...+++.+. .++++++|+++.... ++.+.+.+....+. ..+.++.||+|||.
T Consensus 121 ~g~~l~~~L~~~a~~~Gv--~i~~~~~v~~l~~~~---------------~~g~v~gv~~~~~~--~~i~ak~VIlAtGG 181 (432)
T TIGR02485 121 GGKALTNALYSSAERLGV--EIRYGIAVDRIPPEA---------------FDGAHDGPLTTVGT--HRITTQALVLAAGG 181 (432)
T ss_pred CHHHHHHHHHHHHHHcCC--EEEeCCEEEEEEecC---------------CCCeEEEEEEcCCc--EEEEcCEEEEcCCC
Confidence 356677888888888888 899999999998621 12333333221111 36889999999997
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
++
T Consensus 182 ~~ 183 (432)
T TIGR02485 182 LG 183 (432)
T ss_pred cc
Confidence 64
No 295
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.82 E-value=1.8e-05 Score=82.32 Aligned_cols=40 Identities=38% Similarity=0.571 Sum_probs=36.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--c----CCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R----HHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~----g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||++||+||..| . |++|+|+|+++.+||....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 36999999999999999999 5 8999999999999997654
No 296
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.81 E-value=2.7e-05 Score=78.64 Aligned_cols=39 Identities=44% Similarity=0.762 Sum_probs=35.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|||||++||+||..| .+ .+++|||+.+++||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 3699999999999999999 55 899999999999997665
No 297
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.79 E-value=0.0002 Score=75.37 Aligned_cols=99 Identities=24% Similarity=0.272 Sum_probs=68.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .+.+|+++++.+.+. .. .
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------------------------------------~~----~ 391 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------------------------------------AD----K 391 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC------------------------------------hh----H
Confidence 46899999999999999999 678999999764330 01 1
Q ss_pred HHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+....++ .++ .+++++.|+++...+ +..-.|.+.++.+++..++.+|.||+|+| ..|+
T Consensus 392 ~l~~~l~~~~gV--~i~~~~~v~~i~~~~---------------~~v~~v~~~~~~~~~~~~i~~D~vi~a~G---~~Pn 451 (515)
T TIGR03140 392 VLQDKLKSLPNV--DILTSAQTTEIVGDG---------------DKVTGIRYQDRNSGEEKQLDLDGVFVQIG---LVPN 451 (515)
T ss_pred HHHHHHhcCCCC--EEEECCeeEEEEcCC---------------CEEEEEEEEECCCCcEEEEEcCEEEEEeC---CcCC
Confidence 23333333 577 889999999987520 11223666665444445789999999999 4566
Q ss_pred CC
Q 010421 161 IP 162 (511)
Q Consensus 161 ~p 162 (511)
..
T Consensus 452 ~~ 453 (515)
T TIGR03140 452 TE 453 (515)
T ss_pred ch
Confidence 54
No 298
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.79 E-value=3.6e-05 Score=76.14 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=65.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCC------C---
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNR------D--- 69 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--- 69 (511)
..++|+|||||.++..++..| .+ .+|+++-|+..+-- .....-....-.|...-.|-..|-... .
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~--~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ 266 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFP--MDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHT 266 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCC--CccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhh
Confidence 357899999999999999999 33 57999988654310 000000001111111111111110000 0
Q ss_pred CCCCCChHHH---H--HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 70 DPGFPSYTEI---L--DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 70 ~~~~~~~~~~---~--~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
...-.+.+-+ . -|-+.+..+..+ .++-+++|++++.. +++.|.+++++..+++..++.
T Consensus 267 ny~~i~~~~l~~iy~~lY~~~v~g~~~~--~l~~~~~v~~~~~~---------------~~~~~~l~~~~~~~~~~~~~~ 329 (341)
T PF13434_consen 267 NYGGIDPDLLEAIYDRLYEQRVSGRGRL--RLLPNTEVTSAEQD---------------GDGGVRLTLRHRQTGEEETLE 329 (341)
T ss_dssp TSSEB-HHHHHHHHHHHHHHHHHT---S--EEETTEEEEEEEEE---------------S-SSEEEEEEETTT--EEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCCe--EEeCCCEEEEEEEC---------------CCCEEEEEEEECCCCCeEEEe
Confidence 0011112222 1 112222222223 56678999999984 156899999998777777899
Q ss_pred eCEEEEeecc
Q 010421 145 FEFLVVCTGK 154 (511)
Q Consensus 145 ~d~vVlAtG~ 154 (511)
+|.||+|||.
T Consensus 330 ~D~VilATGy 339 (341)
T PF13434_consen 330 VDAVILATGY 339 (341)
T ss_dssp ESEEEE---E
T ss_pred cCEEEEcCCc
Confidence 9999999995
No 299
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.79 E-value=0.00026 Score=74.42 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=29.9
Q ss_pred CCeEEEECCCHHHHHHHHhccCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQLRHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l~g~~v~v~e~~~~ 36 (511)
..||+|||+|.||++||.++.+.+|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLAPRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhCcCCEEEEECCCC
Confidence 479999999999999999996679999999775
No 300
>PRK10262 thioredoxin reductase; Provisional
Probab=97.78 E-value=0.00025 Score=70.03 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=70.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|..|+.+|..| .+.+|+++++.+.+. ....+.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~------------------------------------~~~~~~~ 189 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR------------------------------------AEKILIK 189 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC------------------------------------CCHHHHH
Confidence 46899999999999999999 778999999964320 1123345
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC-CCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN-SNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+.+..++.++ .+.++++|++++... .+.-.|++.+.. .+...++.+|.||+|+|. .|+
T Consensus 190 ~~~~~l~~~gV--~i~~~~~v~~v~~~~---------------~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~---~p~ 249 (321)
T PRK10262 190 RLMDKVENGNI--ILHTNRTLEEVTGDQ---------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIGH---SPN 249 (321)
T ss_pred HHHhhccCCCe--EEEeCCEEEEEEcCC---------------ccEEEEEEEEcCCCCeEEEEECCEEEEEeCC---ccC
Confidence 55555566677 788899999997520 122235555442 123347899999999994 555
Q ss_pred CC
Q 010421 161 IP 162 (511)
Q Consensus 161 ~p 162 (511)
..
T Consensus 250 ~~ 251 (321)
T PRK10262 250 TA 251 (321)
T ss_pred hh
Confidence 43
No 301
>PLN02576 protoporphyrinogen oxidase
Probab=97.77 E-value=2.9e-05 Score=81.63 Aligned_cols=40 Identities=48% Similarity=0.645 Sum_probs=36.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||++||+||..| . |++|+|+|+++.+||....
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 46899999999999999999 6 8999999999999997655
No 302
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.76 E-value=2.9e-05 Score=81.49 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=40.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceecc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQ 52 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~ 52 (511)
+||+|||||++||+||..| .|++|+|+|+++.+||.......++...+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD 51 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFD 51 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEe
Confidence 6899999999999999999 99999999999999997655344454443
No 303
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=2.4e-05 Score=78.85 Aligned_cols=39 Identities=41% Similarity=0.634 Sum_probs=35.7
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|+|||.|||+||+.| .|++|+|+|+++.+||....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 4799999999999999999 99999999999999985443
No 304
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.69 E-value=0.0005 Score=69.19 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=65.1
Q ss_pred CCeEEEECCCHHHHHHHHhc-c-----C--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-R-----H--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPS 75 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~-----g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (511)
.++|+|||+|++|+.+|..| . + .+|+|+ ..+.+. .. .
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l--------------------------------~~--~ 189 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL--------------------------------PG--F 189 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc--------------------------------cc--C
Confidence 35899999999999999988 2 3 478888 322220 11 1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+++...+.+..++.++ .+.++++|.+++. + .|.+.++. ++.+|.||+|+|..
T Consensus 190 ~~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~-----------------~---~v~~~~g~-----~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 190 PAKVRRLVLRLLARRGI--EVHEGAPVTRGPD-----------------G---ALILADGR-----TLPADAILWATGAR 242 (364)
T ss_pred CHHHHHHHHHHHHHCCC--EEEeCCeeEEEcC-----------------C---eEEeCCCC-----EEecCEEEEccCCC
Confidence 24566777778888888 8899999988753 2 36665543 79999999999954
No 305
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.68 E-value=3.8e-05 Score=76.60 Aligned_cols=39 Identities=31% Similarity=0.466 Sum_probs=35.3
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+||+|||||++|+++|..| .|.+|+|+|+++.+||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 5999999999999999999 78999999999999995443
No 306
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.67 E-value=0.00038 Score=67.79 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=63.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|++|+.+|..| .+.+|+++++.+.+. ....
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------------------------------------~~~~--- 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------------------------------------AEKI--- 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC------------------------------------cCHH---
Confidence 46899999999999999999 678999999864220 0112
Q ss_pred HHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 82 YLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 82 yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+.+.+++. ++ .+.++++|+++... +..-.+.+.+..++...++.+|.||+|+|.
T Consensus 182 -~~~~l~~~~gv--~~~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 182 -LLDRLRKNPNI--EFLWNSTVKEIVGD----------------NKVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred -HHHHHHhCCCe--EEEeccEEEEEEcc----------------CcEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 22233333 76 78889999998762 211234454433334457899999999994
No 307
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.67 E-value=0.00014 Score=73.34 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
.+|+|||||.+|+.+|..| .|++|+|||+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 3799999999999999999 899999999877654
No 308
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.64 E-value=3.9e-05 Score=80.79 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=37.2
Q ss_pred EEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCcee
Q 010421 7 IAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTK 50 (511)
Q Consensus 7 v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~ 50 (511)
|+|||||.+||+||..| .|++|+|+|+++.+||........+.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~ 46 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFR 46 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeE
Confidence 68999999999999999 999999999999999976653333433
No 309
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.64 E-value=0.00042 Score=69.01 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=79.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
...|+++|+|..|+.+|..| .+.+|+++++.+.+ ++ . .-...+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~---------------------------~~----~--lf~~~i~~ 259 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL---------------------------LP----R--LFGPSIGQ 259 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------------------------hh----h--hhhHHHHH
Confidence 45799999999999999999 88999999997432 11 1 23567778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
..+.|.++.++ .+.+++.+.+++-..+ ...-.|.+.++. ++.+|.||+++| ..|+.
T Consensus 260 ~~~~y~e~kgV--k~~~~t~~s~l~~~~~--------------Gev~~V~l~dg~-----~l~adlvv~GiG---~~p~t 315 (478)
T KOG1336|consen 260 FYEDYYENKGV--KFYLGTVVSSLEGNSD--------------GEVSEVKLKDGK-----TLEADLVVVGIG---IKPNT 315 (478)
T ss_pred HHHHHHHhcCe--EEEEecceeecccCCC--------------CcEEEEEeccCC-----EeccCeEEEeec---ccccc
Confidence 88888888888 8999999988886321 122346666665 899999999999 56777
Q ss_pred CCCC
Q 010421 162 PAFP 165 (511)
Q Consensus 162 p~~~ 165 (511)
+.+.
T Consensus 316 ~~~~ 319 (478)
T KOG1336|consen 316 SFLE 319 (478)
T ss_pred cccc
Confidence 6554
No 310
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.64 E-value=4.5e-05 Score=80.02 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=40.6
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceecc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQ 52 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~ 52 (511)
+||+|||||.+||++|..| .|.+|+|+||++.+||.......++...+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd 50 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFD 50 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEE
Confidence 5899999999999999999 89999999999999997665344554443
No 311
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.64 E-value=9.5e-05 Score=76.29 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce--EEEEEeCCCCceeEEEeCEEEEe
Q 010421 74 PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW--EVAVQTHNSNSIQRYGFEFLVVC 151 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~d~vVlA 151 (511)
..+.++.++|.+.+.+.|+ .+..+ +|+.+... .+.+ .|.+.++. ++.+|.||-|
T Consensus 151 lDR~~fd~~L~~~A~~~Gv--~~~~g-~V~~v~~~----------------~~g~i~~v~~~~g~-----~i~ad~~IDA 206 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGV--EVIEG-TVVDVELD----------------EDGRITAVRLDDGR-----TIEADFFIDA 206 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT---EEEET--EEEEEE-----------------TTSEEEEEEETTSE-----EEEESEEEE-
T ss_pred EeHHHHHHHHHHHHhcCCC--EEEeC-EEEEEEEc----------------CCCCEEEEEECCCC-----EEEEeEEEEC
Confidence 4688999999999999998 55544 68888873 2233 34443432 7999999999
Q ss_pred ecccC
Q 010421 152 TGKYG 156 (511)
Q Consensus 152 tG~~~ 156 (511)
||..+
T Consensus 207 SG~~s 211 (454)
T PF04820_consen 207 SGRRS 211 (454)
T ss_dssp SGGG-
T ss_pred CCccc
Confidence 99763
No 312
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.63 E-value=4.6e-05 Score=79.37 Aligned_cols=39 Identities=28% Similarity=0.544 Sum_probs=34.6
Q ss_pred CeEEEECCCHHHHHHHHhc--c------CCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R------HHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~------g~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|||||+|||+||..| . +.+|+|+|+++++||....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 4799999999999999999 3 2789999999999997554
No 313
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.60 E-value=0.00043 Score=69.32 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=29.1
Q ss_pred eEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCc
Q 010421 6 KIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSI 37 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~ 37 (511)
||+|||+|.+||++|..| ..++|+|+.|...-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 899999999999999999 66999999997643
No 314
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.60 E-value=0.00068 Score=76.12 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.+||+|||+|.|||.||.++ .|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999 8899999999764
No 315
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.58 E-value=0.00056 Score=72.14 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||.+|+.+|..| .+.+|+++++.+.+. . . .
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~--------------------------------~----~----~ 390 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK--------------------------------A----D----Q 390 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc--------------------------------c----c----H
Confidence 46899999999999999999 778999998864430 0 0 1
Q ss_pred HHHHHHH-hcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 82 YLESYAK-HFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 82 yl~~~~~-~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
++..... ..++ .+++++.|+++... ++.- .+.+.+..+++..++.+|.|++|+|. .|
T Consensus 391 ~l~~~l~~~~gI--~i~~~~~v~~i~~~----------------~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~---~p 449 (517)
T PRK15317 391 VLQDKLRSLPNV--TIITNAQTTEVTGD----------------GDKVTGLTYKDRTTGEEHHLELEGVFVQIGL---VP 449 (517)
T ss_pred HHHHHHhcCCCc--EEEECcEEEEEEcC----------------CCcEEEEEEEECCCCcEEEEEcCEEEEeECC---cc
Confidence 2333333 3467 88999999999862 2222 25566554455557999999999994 45
Q ss_pred CCC
Q 010421 160 IIP 162 (511)
Q Consensus 160 ~~p 162 (511)
+..
T Consensus 450 ~~~ 452 (517)
T PRK15317 450 NTE 452 (517)
T ss_pred Cch
Confidence 543
No 316
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.58 E-value=0.00054 Score=73.01 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.7
Q ss_pred eEEEECCCHHHHHHHHhcc------CCCcEEEcCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQLR------HHNPVVFEASDS 36 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l~------g~~v~v~e~~~~ 36 (511)
||+|||||.|||.||..+. |.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999982 789999999654
No 317
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.58 E-value=5.2e-05 Score=71.97 Aligned_cols=40 Identities=45% Similarity=0.720 Sum_probs=36.8
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG~w~~ 43 (511)
..+|+|||+|++||+||..| ..++|++||....+||.-+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccce
Confidence 46899999999999999999 88999999999999997665
No 318
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.56 E-value=0.00047 Score=72.48 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
...+||+|||||.|||.||..+ .|.+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 3467999999999999999999 889999999976554
No 319
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.56 E-value=7.8e-05 Score=76.23 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=40.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|...+||+|||+|.+|+.+|..| .|.+|+++|+++..||.|..
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 77789999999999999999999 99999999999999998876
No 320
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.52 E-value=8e-05 Score=77.34 Aligned_cols=38 Identities=45% Similarity=0.788 Sum_probs=34.8
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+|+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 589999999999999999 89999999999999996543
No 321
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.51 E-value=0.00011 Score=75.82 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=31.4
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+++|+|||+|++|+..|..|++... +.+|+++.|.+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~---g~~Vtv~E~~p~ 62 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHD---GARVDIIERLPT 62 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC---CCeEEEEecCCC
Confidence 457899999999999999999986311 135999999874
No 322
>PLN02529 lysine-specific histone demethylase 1
Probab=97.47 E-value=0.0001 Score=79.41 Aligned_cols=40 Identities=38% Similarity=0.539 Sum_probs=36.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 57999999999999999999 89999999999999987554
No 323
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.47 E-value=0.0012 Score=63.90 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..||+|||||.+|.+.|..| .|.+|.|+||.
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 47999999999999999999 89999999984
No 324
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.00037 Score=70.51 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
|...+||+|||||.||+.||... .|.++.++--+
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 45569999999999999999998 78887766543
No 325
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.46 E-value=0.00026 Score=70.27 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=32.8
Q ss_pred hhhcc-CeEEEEeCceeEEe-CC----cEEEcCCceeeccEEEEecCC
Q 010421 328 SEAEK-GKIVFKRASKWWFW-KG----GLEFEDNTKLEADVVILCTGY 369 (511)
Q Consensus 328 ~~l~~-g~v~v~~~~i~~~~-~~----~v~~~dG~~~~~D~VI~aTG~ 369 (511)
+.+.+ ++|++..+.|..+. ++ ||++.+|+++.+|.||.|||.
T Consensus 103 ~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 103 EKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 44544 89999988888874 33 488999999999999999999
No 326
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.46 E-value=0.00065 Score=63.82 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=32.1
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~G 38 (511)
.+|+||||||+.|++.|++| .+.+|.|+|+...++
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 58999999999999999999 589999999988775
No 327
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.40 E-value=0.0011 Score=65.78 Aligned_cols=58 Identities=17% Similarity=0.433 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++..-+.++.+.+|. .++|+++|++++..+ +....|.++++. ++.+|+||+|.|+.+
T Consensus 173 ~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~~---------------~~~~~v~~~~g~-----~i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGG--EIRFNTEVEDIEIED---------------NEVLGVKLTKGE-----EIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCc--EEEeeeEEEEEEecC---------------CceEEEEccCCc-----EEecCEEEEccCcch
Confidence 4566667888888887 899999999999841 222345556655 899999999999863
No 328
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.38 E-value=0.0075 Score=62.41 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|..|+-+|..| .|.+|++++++.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 36899999999999999999 888999999864
No 329
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00019 Score=71.27 Aligned_cols=41 Identities=32% Similarity=0.528 Sum_probs=37.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+..||+|||||.+||.+|..| .|++|+|+|.++.+||....
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 457999999999999999999 99999999999999996543
No 330
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.34 E-value=0.00019 Score=76.23 Aligned_cols=40 Identities=28% Similarity=0.596 Sum_probs=36.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC--CcCcc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD--SIGGI 40 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~--~~GG~ 40 (511)
|....||+|||+|.+||+||..+ .|.+|+|+||.+ ..||.
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 66788999999999999999999 899999999988 66664
No 331
>PRK12831 putative oxidoreductase; Provisional
Probab=97.33 E-value=0.0071 Score=62.79 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=28.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|..|+.+|..| .|.+|+++++++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 46899999999999999998 888899999864
No 332
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.33 E-value=0.0002 Score=77.75 Aligned_cols=40 Identities=35% Similarity=0.564 Sum_probs=36.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+|||||++|+++|..| .|++|+|+|+++.+||....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 47899999999999999999 89999999999999997554
No 333
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.29 E-value=0.00021 Score=74.41 Aligned_cols=38 Identities=39% Similarity=0.657 Sum_probs=34.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+|+|||||++|+++|..| .|++|+|+|+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 589999999999999999 89999999999999986443
No 334
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.29 E-value=0.0062 Score=60.94 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~ 35 (511)
++|+|||+|..|+.+|..| .+.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 6899999999999999998 7887 99999853
No 335
>PLN02487 zeta-carotene desaturase
Probab=97.27 E-value=0.00026 Score=74.60 Aligned_cols=39 Identities=38% Similarity=0.628 Sum_probs=35.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|||||++||++|..| .|++|+|+|+++.+||.+..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s 116 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGS 116 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceee
Confidence 5999999999999999999 89999999999999986653
No 336
>PLN02463 lycopene beta cyclase
Probab=97.24 E-value=0.0008 Score=69.11 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=34.7
Q ss_pred hhhhhccCeEEEEeCceeEEeCC----cEEEcCCceeeccEEEEecCCCCc
Q 010421 326 FFSEAEKGKIVFKRASKWWFWKG----GLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 326 ~~~~l~~g~v~v~~~~i~~~~~~----~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+.+.+.+++++.+.|.+++.+ .|+++||.++++|.||.|+|.+..
T Consensus 120 Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 120 MLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 34444555678876667776533 277889989999999999998764
No 337
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.24 E-value=0.01 Score=61.59 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=28.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.++|+|||+|..|+.+|..| .|. +|+++++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999 677 799999853
No 338
>PRK06847 hypothetical protein; Provisional
Probab=97.23 E-value=0.0015 Score=65.97 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=36.7
Q ss_pred CCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcCCceeeccEEEEecCCCCcc
Q 010421 323 PEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 323 ~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
.+.+.+.+.+.+++++.+. +.+++.+ + |.+.||+++.+|.||.|+|.....
T Consensus 110 ~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 110 ARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 3445555666677887774 6666532 2 677899999999999999997653
No 339
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.20 E-value=0.00061 Score=66.76 Aligned_cols=99 Identities=20% Similarity=0.300 Sum_probs=72.0
Q ss_pred eEEEECCCHHHHHHHHhc----------------cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL----------------RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRD 69 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l----------------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (511)
.++||||||.|+..|.+| ..++|+++|..+.+=
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------- 268 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------- 268 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-------------------------------
Confidence 589999999999999998 235799999976541
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEE
Q 010421 70 DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLV 149 (511)
Q Consensus 70 ~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 149 (511)
.. -...+.+|.+....+.++ .++.++.|..|... +|....+ +|+..++.|-.+|
T Consensus 269 -~m--Fdkrl~~yae~~f~~~~I--~~~~~t~Vk~V~~~--------------------~I~~~~~-~g~~~~iPYG~lV 322 (491)
T KOG2495|consen 269 -NM--FDKRLVEYAENQFVRDGI--DLDTGTMVKKVTEK--------------------TIHAKTK-DGEIEEIPYGLLV 322 (491)
T ss_pred -HH--HHHHHHHHHHHHhhhccc--eeecccEEEeecCc--------------------EEEEEcC-CCceeeecceEEE
Confidence 11 134566777777777777 78888888888752 3666555 3555689999999
Q ss_pred EeecccCCCCCCC
Q 010421 150 VCTGKYGDVPIIP 162 (511)
Q Consensus 150 lAtG~~~~~p~~p 162 (511)
-|||.. ..|.+-
T Consensus 323 WatG~~-~rp~~k 334 (491)
T KOG2495|consen 323 WATGNG-PRPVIK 334 (491)
T ss_pred ecCCCC-Cchhhh
Confidence 999976 355443
No 340
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.19 E-value=0.0004 Score=69.81 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=34.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||..|..+|.-. .|+++.++|+++...|+-+.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSk 108 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSK 108 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCcccc
Confidence 48999999999999999888 99999999998776665443
No 341
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.18 E-value=0.0004 Score=77.74 Aligned_cols=36 Identities=22% Similarity=0.026 Sum_probs=32.4
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|+|||+|++|+-.|..|++.+.. ||++.+.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~-----VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFP-----VTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCe-----EEEEeeCC
Confidence 4689999999999999999999998765 99999875
No 342
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.18 E-value=0.00038 Score=68.16 Aligned_cols=39 Identities=36% Similarity=0.566 Sum_probs=32.9
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCcccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~ 42 (511)
.++|+|+|||.+||++|.+| ....|++||+.+++||-..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 47999999999999999999 3445788999999998433
No 343
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.0054 Score=61.68 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||+|.||+.+|.+|.+.... ..+ |+++.+++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~-~~~-Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRP-SGL-ISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCC-CCc-eEEeccccc
Confidence 4799999999999999999987442 222 888888764
No 344
>PLN03000 amine oxidase
Probab=97.13 E-value=0.00046 Score=75.13 Aligned_cols=40 Identities=40% Similarity=0.533 Sum_probs=36.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+|||||++|+.+|..| .|++|+|+|+++.+||.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 47899999999999999999 89999999999999997664
No 345
>PLN02612 phytoene desaturase
Probab=97.12 E-value=0.00044 Score=73.55 Aligned_cols=39 Identities=41% Similarity=0.688 Sum_probs=35.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
.++|+|||||++||++|..| .|++|+|+|+++.+||.-.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 46899999999999999999 8999999999999998543
No 346
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.11 E-value=0.0005 Score=69.04 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
.+||+|||||++|+.+|..| .|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 36999999999999999999 99999999987654
No 347
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.09 E-value=0.0051 Score=65.46 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=29.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 46899999999999999998 7899999998643
No 348
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.06 E-value=0.00077 Score=68.80 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=30.7
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHh-cCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAES-NQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~-~~~~~~~~Vtl~~R~~~ 236 (511)
..+++|+|||+|++|+.+|..|+.. +. +|+++.|.|.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~-----~VtlfEk~p~ 74 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV-----KVDIFEKLPN 74 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC-----eEEEEecCCC
Confidence 3578999999999999999987654 43 4999999875
No 349
>PLN02976 amine oxidase
Probab=97.06 E-value=0.00052 Score=77.48 Aligned_cols=40 Identities=38% Similarity=0.581 Sum_probs=37.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+|||||++|+++|..| .|++|+|||+++.+||.|..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 47899999999999999999 89999999999999998766
No 350
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.05 E-value=0.002 Score=64.82 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=28.6
Q ss_pred eCceeEEeCCcEEEcCCceeeccEEEEecCCCC
Q 010421 339 RASKWWFWKGGLEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 339 ~~~i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
...+.++++++|+++||+++.+|.||.|.|.++
T Consensus 106 ~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 106 GRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred cCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 345788888889999999999999999999775
No 351
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.97 E-value=0.00067 Score=70.87 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=35.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+||+|||+|++|+.+|+.| .|++|+|+|+....||.|-.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g 41 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIG 41 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCccc
Confidence 5899999999999999999 89999999999999987754
No 352
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.96 E-value=0.021 Score=59.50 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.++|+|||+|..|+.+|..+ .|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 36899999999999999877 665 688776643
No 353
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.94 E-value=0.00039 Score=70.38 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=31.2
Q ss_pred CchhhhhccCeEEEEeCc-eeEEe--CCc---EEEcCCceeeccEEEEecCCCCc
Q 010421 324 EGFFSEAEKGKIVFKRAS-KWWFW--KGG---LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 324 ~~~~~~l~~g~v~v~~~~-i~~~~--~~~---v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+...+++-+|+++.+. |..+. +++ |.++++.++.+|.||+|||-..-
T Consensus 113 ~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 113 DALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred HHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 445566777789999875 77774 455 66667888999999999998763
No 354
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.93 E-value=0.029 Score=62.15 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~ 35 (511)
.++|+|||||..|+-+|..+ .|.+ |+++++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999 7887 99999864
No 355
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.92 E-value=0.0025 Score=70.80 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=32.6
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|+|||+|++|+.+|..|++.+.. |+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~-----VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHP-----VTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCe-----EEEEecccc
Confidence 4689999999999999999999998764 999998764
No 356
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.91 E-value=0.011 Score=55.11 Aligned_cols=39 Identities=31% Similarity=0.557 Sum_probs=32.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cC------CCcEEEcCCCCcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RH------HNPVVFEASDSIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g------~~v~v~e~~~~~GG 39 (511)
|.+.++|+|+|||+.|+++|..| .+ ++|+|||+..-.||
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 34678999999999999999999 33 68999999765554
No 357
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.91 E-value=0.013 Score=59.38 Aligned_cols=40 Identities=33% Similarity=0.419 Sum_probs=34.6
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++.=|||+|.|+|+||..| +|-+|+|+|+.+..||....
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg 47 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDG 47 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccC
Confidence 35788999999999999999 66789999999998886554
No 358
>PRK05868 hypothetical protein; Validated
Probab=96.90 E-value=0.0028 Score=63.87 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=30.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||+|.+|.-+|..|++.+.. |+++.|++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~-----v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS-----VTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-----EEEEcCCCC
Confidence 4799999999999999999988765 999999875
No 359
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0048 Score=63.85 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 74 PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+...-+.+-|...|+++|. .|..++.|++|.-.. ++.|-|.+..+ .+++.++|-|+|
T Consensus 184 ~DP~~lC~ala~~A~~~GA--~viE~cpV~~i~~~~---------------~~~~gVeT~~G------~iet~~~VNaaG 240 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGA--LVIENCPVTGLHVET---------------DKFGGVETPHG------SIETECVVNAAG 240 (856)
T ss_pred cCHHHHHHHHHHHHHhcCc--EEEecCCcceEEeec---------------CCccceeccCc------ceecceEEechh
Confidence 3445566777788888998 899999999998742 45566776666 689999999999
Q ss_pred cc
Q 010421 154 KY 155 (511)
Q Consensus 154 ~~ 155 (511)
..
T Consensus 241 vW 242 (856)
T KOG2844|consen 241 VW 242 (856)
T ss_pred HH
Confidence 75
No 360
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.88 E-value=0.0079 Score=58.98 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=37.3
Q ss_pred ceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 95 CVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 95 ~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.-+++|.+++.. ++|++.+.+...++++..++..|.||+|||..
T Consensus 294 ~l~~~~ev~~~~~~---------------G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 294 RLLSLSEVQSVEPA---------------GDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred eeccccceeeeecC---------------CCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 34557888888873 36778999988877888899999999999965
No 361
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.82 E-value=0.0015 Score=65.81 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=35.0
Q ss_pred hhhccCeEEEEeCceeEEeCCc----EEEcCCceeeccEEEEecCCCCc
Q 010421 328 SEAEKGKIVFKRASKWWFWKGG----LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 328 ~~l~~g~v~v~~~~i~~~~~~~----v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+.++++.+....|.+++.++ |+++||+++.++.||-|+|....
T Consensus 95 ~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 95 ERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 4444566777777788887655 58899999999999999997653
No 362
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.81 E-value=0.0056 Score=64.51 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=29.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
-.|+|||||.+|+++|..+++.+.+ |.++.+.+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~k-----V~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAK-----TLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCc-----EEEEeccc
Confidence 3699999999999999999998765 99998864
No 363
>PRK09897 hypothetical protein; Provisional
Probab=96.78 E-value=0.011 Score=62.01 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||+|.+|+=+|..|++... ..+|+++.+++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~---~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQT---PLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCC---CCcEEEEecCCC
Confidence 579999999999999999987643 246999998653
No 364
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.76 E-value=0.044 Score=57.03 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=28.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~ 36 (511)
.++|+|||+|..|+.+|..+ .|. +|+|+++++.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 37899999999999999987 775 6999998643
No 365
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.75 E-value=0.051 Score=58.99 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.++|+|||+|..|+.+|..+ .|. +|+|+.+++
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47899999999999999998 665 599998864
No 366
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.70 E-value=0.0048 Score=62.60 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=28.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|.-+|..|++.+. +|+++.+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~-----~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL-----RVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-----eEEEEccCCC
Confidence 48999999999999999987765 4999998764
No 367
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.70 E-value=0.0014 Score=63.82 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=26.6
Q ss_pred CeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~ 36 (511)
+|++|||+|++|..+|.+| .+ .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 6999999999999999999 44 79999999753
No 368
>PRK07236 hypothetical protein; Provisional
Probab=96.63 E-value=0.007 Score=61.39 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=31.7
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
...+|+|||||.+|.-+|..|++.+.+ |+++.|.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWD-----VDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC-----EEEEecCCC
Confidence 347899999999999999999998765 999999864
No 369
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.60 E-value=0.057 Score=58.77 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.++|+|||+|..|+-+|..+ .|. +|+++.+++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 36899999999999999877 775 699988764
No 370
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.59 E-value=0.0036 Score=65.53 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=28.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|.+|+++|..| .|.+|+++|++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999999999 89999999975
No 371
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0097 Score=59.27 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA 33 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~ 33 (511)
..+||+|||||.||..||... .|.+.+++-.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 357999999999999998888 7877766654
No 372
>PLN02697 lycopene epsilon cyclase
Probab=96.57 E-value=0.0061 Score=63.85 Aligned_cols=47 Identities=9% Similarity=0.182 Sum_probs=33.4
Q ss_pred chhhhhccCeEEEEeCceeEEeC--Cc---EEEcCCceeeccEEEEecCCCC
Q 010421 325 GFFSEAEKGKIVFKRASKWWFWK--GG---LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~~i~~~~~--~~---v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
.+.+.+.+.++++....+..++. ++ +++.+|.++.+|+||.|+|...
T Consensus 197 ~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 197 ELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 34444455567776666777753 33 3567888999999999999976
No 373
>PRK02106 choline dehydrogenase; Validated
Probab=96.49 E-value=0.0025 Score=67.99 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~ 35 (511)
|+..+|+||||+|++|+.+|.+| .+.+|+|+|+..
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45568999999999999999999 589999999985
No 374
>PRK07588 hypothetical protein; Provisional
Probab=96.46 E-value=0.0073 Score=61.39 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=29.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||||.+|.=+|..|++.+.. |+++.|.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE-----PTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc-----eEEEeCCCC
Confidence 699999999999999999998765 999999864
No 375
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.46 E-value=0.0015 Score=59.48 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=26.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||+|.+|+.+|..|++.+. +|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~-----~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA-----KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-----EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC-----eEEEEeccc
Confidence 59999999999999999997665 488885544
No 376
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.44 E-value=0.0067 Score=62.77 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=28.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|.+|+-.|..| .+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 47899999999999999999 667899998854
No 377
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.40 E-value=0.011 Score=60.12 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=31.1
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|.=+|..|++.+.. |+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~-----v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK-----VKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc-----EEEEeeCcc
Confidence 46899999999999999999998765 999999874
No 378
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.36 E-value=0.12 Score=56.06 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=27.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~ 36 (511)
.++|+|||+|..|+.+|..+ .|. +|+++.+++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 36899999999999999876 674 7999988643
No 379
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.33 E-value=0.01 Score=54.04 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=23.5
Q ss_pred EEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 201 AVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 201 ~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|||+|.+|+-+|..|.+.+.. +|+++.|.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~----~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID----PVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-------EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCC----cEEEEeCCC
Confidence 6999999999999999988653 499999874
No 380
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.33 E-value=0.0092 Score=60.68 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=36.3
Q ss_pred CchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCc
Q 010421 324 EGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 324 ~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+.+.+++.+++++.+. +.+++. ++ |++++|+++.+|.||.|+|....
T Consensus 117 ~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 117 DRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 345556667788888764 666643 33 56678888999999999999874
No 381
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.028 Score=57.86 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
...+|+|||+|.||+=+|..|.+.+.. .+.++.++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~----~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVP----DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCC----cEEEEEccC
Confidence 346899999999999999999998764 288888874
No 382
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.31 E-value=0.0039 Score=59.16 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|++||+|||||.+|++|+.+| .|.+.+|+.+..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 358999999999999999999 999999998854
No 383
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.27 E-value=0.019 Score=60.44 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.2
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+++|..+++.+.. |.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~-----v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAK-----TLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCC-----EEEEeccc
Confidence 499999999999999999988765 99998864
No 384
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.26 E-value=0.011 Score=66.03 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+++|+|||||++|+..|..|++.+.. |+++.+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~-----VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHP-----VTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe-----EEEEecccc
Confidence 468999999999999999999998765 999988753
No 385
>PRK09126 hypothetical protein; Provisional
Probab=96.23 E-value=0.024 Score=57.55 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.2
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||||.+|+-+|..|++.+.+ |+++.|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLK-----VTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc-----EEEEeCCCc
Confidence 4699999999999999999998765 999999874
No 386
>PRK07045 putative monooxygenase; Reviewed
Probab=96.18 E-value=0.0085 Score=60.80 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=30.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||||.+|+=+|..|++.+-+ |+++.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~-----v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHS-----VTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCc-----EEEEeCCCc
Confidence 3799999999999999999998765 999999875
No 387
>PRK06834 hypothetical protein; Provisional
Probab=96.18 E-value=0.017 Score=60.46 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..|+|||+|.+|+=+|..|++.+.. |+++.|.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~-----v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVD-----VAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 4699999999999999999998765 999999864
No 388
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.16 E-value=0.0016 Score=57.63 Aligned_cols=39 Identities=33% Similarity=0.601 Sum_probs=33.9
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCc-cccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGG-IWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG-~w~~ 43 (511)
.||+|||||.+||++|+.+ ++++|.|+|.+-.+|| .|..
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLG 120 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLG 120 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccccc
Confidence 5899999999999999998 6789999999877764 5654
No 389
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.16 E-value=0.028 Score=56.12 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=50.2
Q ss_pred CCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 71 PGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 71 ~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
..|| ...++.+-|...+++.++ .++++++|++|+ ++.|.|.+..+. . .+.||+
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i~------------------~~~~~v~~~~~~--~--~~~a~~ 132 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGV--QFHTRHRWIGWQ------------------GGTLRFETPDGQ--S--TIEADA 132 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEe------------------CCcEEEEECCCc--e--EEecCE
Confidence 4555 678899999999999999 899999999993 334777764321 1 589999
Q ss_pred EEEeecccCCCCCC
Q 010421 148 LVVCTGKYGDVPII 161 (511)
Q Consensus 148 vVlAtG~~~~~p~~ 161 (511)
||+|||..+ .|..
T Consensus 133 vIlAtGG~s-~p~~ 145 (376)
T TIGR03862 133 VVLALGGAS-WSQL 145 (376)
T ss_pred EEEcCCCcc-cccc
Confidence 999999863 4443
No 390
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.15 E-value=0.015 Score=55.01 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=28.3
Q ss_pred eeEEe--CCcEEEcCCceeeccEEEEecCCCCccccc
Q 010421 342 KWWFW--KGGLEFEDNTKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 342 i~~~~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~ 376 (511)
+.+++ .+.|++.+|++|..|.+|.|+|.+.++...
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~I 150 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKI 150 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchh
Confidence 34454 456999999999999999999999987543
No 391
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.15 E-value=0.05 Score=53.55 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=29.8
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCcEEEcCC--CCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNPVVFEAS--DSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~--~~~G 38 (511)
.+||+|+||||.|++.|..| ...++.++|.. +..+
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~ 78 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLG 78 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccc
Confidence 58999999999999999999 45689999987 4444
No 392
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.13 E-value=0.042 Score=52.74 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++++|+|||+.++..|--+ .|.++-++=|.+.+ .+.| .+.+.
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv--------------------------------LR~F--D~~i~ 233 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV--------------------------------LRGF--DEMIS 233 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh--------------------------------hcch--hHHHH
Confidence 357999999999999888887 77888888776554 1222 34566
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.+.+..+.-++ +++-++.++.+.... ++...+....+. ....|.|+.|+| ..|+
T Consensus 234 ~~v~~~~~~~gi--nvh~~s~~~~v~K~~---------------~g~~~~i~~~~~-----i~~vd~llwAiG---R~Pn 288 (478)
T KOG0405|consen 234 DLVTEHLEGRGI--NVHKNSSVTKVIKTD---------------DGLELVITSHGT-----IEDVDTLLWAIG---RKPN 288 (478)
T ss_pred HHHHHHhhhcce--eecccccceeeeecC---------------CCceEEEEeccc-----cccccEEEEEec---CCCC
Confidence 777777777777 788888999988742 443444444442 345999999999 6777
Q ss_pred CCCC
Q 010421 161 IPAF 164 (511)
Q Consensus 161 ~p~~ 164 (511)
.-++
T Consensus 289 tk~L 292 (478)
T KOG0405|consen 289 TKGL 292 (478)
T ss_pred cccc
Confidence 6543
No 393
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.12 E-value=0.012 Score=59.98 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=36.0
Q ss_pred CchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCc
Q 010421 324 EGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 324 ~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
..+.+.+.+.+++++.+. +..++. ++ |+++||+.+.+|.||.|+|....
T Consensus 115 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 115 NALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 445566666678888664 667653 33 56778988999999999999764
No 394
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.10 E-value=0.02 Score=57.88 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=34.9
Q ss_pred Cchhhhhcc-CeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCC
Q 010421 324 EGFFSEAEK-GKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 324 ~~~~~~l~~-g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
..+.+.+.+ .+++++.+. +.+++. ++ |.+++|+++.+|.||.|.|...
T Consensus 109 ~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 109 QALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 344455555 488888654 777743 33 6677888899999999999875
No 395
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.057 Score=52.45 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=65.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|-+++..|..| -+-+|+++=|++.+ -..+.+.+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~------------------------------------ra~~~~~~ 186 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF------------------------------------RAEEILVE 186 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc------------------------------------CcCHHHHH
Confidence 46999999999999999999 55679999987554 11223333
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
-++. +-++ .+++++++.++.-. +.-.|.+++.. ++...+.+|.|+++.|+.
T Consensus 187 ~l~~---~~~i--~~~~~~~i~ei~G~-----------------~v~~v~l~~~~-~~~~~~~~~gvf~~iG~~ 237 (305)
T COG0492 187 RLKK---NVKI--EVLTNTVVKEILGD-----------------DVEGVVLKNVK-GEEKELPVDGVFIAIGHL 237 (305)
T ss_pred HHHh---cCCe--EEEeCCceeEEecC-----------------ccceEEEEecC-CceEEEEeceEEEecCCC
Confidence 2221 1245 78889999988762 12247777654 455588999999999953
No 396
>PRK06753 hypothetical protein; Provisional
Probab=96.09 E-value=0.026 Score=56.91 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=30.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||||.+|.=+|..|++.+.+ |+++.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~-----v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE-----VKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-----EEEEecCCc
Confidence 699999999999999999998765 999999875
No 397
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.09 E-value=0.0098 Score=54.27 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=30.5
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
..+++|+|||||.+|..-+..|.+.++. |+++...
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~-----VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQ-----LRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCE-----EEEEcCC
Confidence 5789999999999999999999998765 8888653
No 398
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.02 E-value=0.013 Score=55.83 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=29.7
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~~~ 36 (511)
..||+|||+|-.|.+.|.-| .|++|+|+|+++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 46899999999999999999 5699999999764
No 399
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.02 E-value=0.0094 Score=67.55 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+++|+|||+|++|+..|..|++.+.. |+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~-----VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVD-----VTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc-----EEEEecCC
Confidence 578999999999999999999998765 99998875
No 400
>PRK06184 hypothetical protein; Provisional
Probab=96.02 E-value=0.025 Score=59.62 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||+|.+|.=+|..|++.+.. |+++.|.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~-----v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS-----FRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 4699999999999999999998865 999999864
No 401
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.01 E-value=0.015 Score=59.05 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=30.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||||.+|.=+|..|++.+.+ |+++.|.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLR-----VALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCe-----EEEEecCCC
Confidence 3699999999999999999988754 999999865
No 402
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.98 E-value=0.034 Score=56.76 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=35.6
Q ss_pred chhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCc
Q 010421 325 GFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
.+.+.+.+.+++++.+. +.+++. ++ |.++||+++.+|.||.|.|....
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 44455666678888774 666653 33 56789988999999999998763
No 403
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.97 E-value=0.0064 Score=64.26 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=31.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|.+.+|+||||+|.+|..+|..| .+.+|+|+|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 44678999999999999999999 999999999974
No 404
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.96 E-value=0.024 Score=57.56 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=37.1
Q ss_pred Cchhhhhc-cCeEEEEeCc-eeEEeCCc----EEEc-CCceeeccEEEEecCCCC
Q 010421 324 EGFFSEAE-KGKIVFKRAS-KWWFWKGG----LEFE-DNTKLEADVVILCTGYDG 371 (511)
Q Consensus 324 ~~~~~~l~-~g~v~v~~~~-i~~~~~~~----v~~~-dG~~~~~D~VI~aTG~~~ 371 (511)
..+.+.+. .++|+++.+. |+.++.++ ++++ ||+++++|+||-|-|...
T Consensus 108 ~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S 162 (387)
T COG0654 108 NALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS 162 (387)
T ss_pred HHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence 34455554 5679999875 77776544 7788 999999999999999876
No 405
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.019 Score=55.77 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=29.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|.|||+|++|+=.|..|.+... +-+|+++.+.|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~---~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHP---NAHVDIFEKLPV 56 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCC---CCeeEeeecCCc
Confidence 489999999999999999988522 235999998773
No 406
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.015 Score=55.51 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=75.0
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYL 83 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (511)
+-+|||||..+|.||-.| .|++|+|.=|+--+ ..| .+++.+.+
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L---------------------------------rGF--Dqdmae~v 244 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL---------------------------------RGF--DQDMAELV 244 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeec---------------------------------ccc--cHHHHHHH
Confidence 578999999999999999 88899998885211 222 46788888
Q ss_pred HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCCC
Q 010421 84 ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPA 163 (511)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~ 163 (511)
...++..|+ .+.-.+..++|++.+ +++.+|...+..+++.-+..||.|+.|.| ..+.+-+
T Consensus 245 ~~~m~~~Gi--kf~~~~vp~~Veq~~---------------~g~l~v~~k~t~t~~~~~~~ydTVl~AiG---R~~~~~~ 304 (503)
T KOG4716|consen 245 AEHMEERGI--KFLRKTVPERVEQID---------------DGKLRVFYKNTNTGEEGEEEYDTVLWAIG---RKALTDD 304 (503)
T ss_pred HHHHHHhCC--ceeecccceeeeecc---------------CCcEEEEeecccccccccchhhhhhhhhc---cccchhh
Confidence 888888887 555555567777642 56667777666555555678999999999 4455443
No 407
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.92 E-value=0.076 Score=55.28 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=28.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+.|+|||+|.+|+=.|..+++.+.+ |.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~-----V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFD-----VTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCe-----EEEEeCCC
Confidence 4699999999999999999887654 99998864
No 408
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.91 E-value=0.012 Score=65.03 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=32.3
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|+|||+|++|+.+|..|++.+.. ||++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-----Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-----VTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-----EEEEcccc
Confidence 5789999999999999999999998765 99998864
No 409
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.84 E-value=0.012 Score=60.56 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=29.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
-.|+|||+|.+|.=+|..|++.+.+ |.++.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~-----V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQ-----VLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCe-----EEEEEcCC
Confidence 3699999999999999999988765 99999975
No 410
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.84 E-value=0.024 Score=54.83 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+-+|..|++.+.+ |+++.|++.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~-----v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR-----VLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-----EEEEeccCC
Confidence 599999999999999999987654 999999863
No 411
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.79 E-value=0.06 Score=61.33 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=63.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
.++|+|||+|+.|+.+|..| .|. .|+|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------------------------------------~~--- 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------------------------------------SP--- 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------hH---
Confidence 46899999999999999999 775 47899875322 01
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+...+++.++ .++.++.|+++... +..-.|++.... +...++.+|.|+++.| ..|+
T Consensus 356 -~l~~~L~~~GV--~i~~~~~v~~i~g~----------------~~v~~V~l~~~~-g~~~~i~~D~V~va~G---~~Pn 412 (985)
T TIGR01372 356 -EARAEARELGI--EVLTGHVVAATEGG----------------KRVSGVAVARNG-GAGQRLEADALAVSGG---WTPV 412 (985)
T ss_pred -HHHHHHHHcCC--EEEcCCeEEEEecC----------------CcEEEEEEEecC-CceEEEECCEEEEcCC---cCch
Confidence 12334566777 88899999988751 111134454211 2223789999999999 4565
Q ss_pred C
Q 010421 161 I 161 (511)
Q Consensus 161 ~ 161 (511)
.
T Consensus 413 t 413 (985)
T TIGR01372 413 V 413 (985)
T ss_pred h
Confidence 4
No 412
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.78 E-value=0.033 Score=56.48 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=29.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|.-+|..|++.+.+ |+++.|.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~-----v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGAS-----VALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCe-----EEEEeCCCC
Confidence 4699999999999999999987654 999999764
No 413
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.78 E-value=0.023 Score=56.53 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=32.7
Q ss_pred chhhhhccCeEEEEeC-ceeEEe--CCc---EEEcCCceeeccEEEEecCCCCcc
Q 010421 325 GFFSEAEKGKIVFKRA-SKWWFW--KGG---LEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~-~i~~~~--~~~---v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
.+.+.+++-+++++.+ .|.++. +++ |.+++|+ +.+|.||+|+|.....
T Consensus 152 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 152 ALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred hhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 3445555567999988 587775 333 6678887 9999999999997653
No 414
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.78 E-value=0.03 Score=57.22 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=34.1
Q ss_pred chhhhhcc-CeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCC
Q 010421 325 GFFSEAEK-GKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 325 ~~~~~l~~-g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
.+++.+.+ ++|++..+. +++++. ++ |.++||+++.+|+||-|.|.+.
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 34444444 578887764 666643 33 6778999999999999999876
No 415
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.76 E-value=0.22 Score=53.19 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~ 34 (511)
.++|+|||+|..|+.+|..+ .+ .+++|+.+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 46899999999999998877 55 468888775
No 416
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.75 E-value=0.013 Score=61.29 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=30.5
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+++|+|||+|.+|+++|..|++.+.. |+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-----V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR-----VTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-----EEEEeCCc
Confidence 4678999999999999999999887754 99987654
No 417
>PRK13984 putative oxidoreductase; Provisional
Probab=95.73 E-value=0.3 Score=52.71 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=18.5
Q ss_pred CCeEEEECCCHHHHHHHHhc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL 23 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l 23 (511)
.++|+|||||..|+-+|..|
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l 437 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSM 437 (604)
T ss_pred CCcEEEECCchHHHHHHHHH
Confidence 36899999999999999998
No 418
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.70 E-value=0.037 Score=56.68 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=29.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||+|.+|+=+|..|++.+.- +|+++.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~----~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHL----NVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC----CEEEEecCCc
Confidence 699999999999999999987641 3999999875
No 419
>PRK11445 putative oxidoreductase; Provisional
Probab=95.57 E-value=0.021 Score=57.16 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=28.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||+|.+|.-+|..|++. .+ |+++.|.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~-----V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MK-----VIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CC-----EEEEECCCc
Confidence 599999999999999999887 54 999999874
No 420
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.57 E-value=0.034 Score=56.24 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=29.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|.=+|..|++.+.+ |+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~-----v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK-----IALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE-----EEEEeCCCc
Confidence 489999999999999999988765 999999874
No 421
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.57 E-value=0.045 Score=55.57 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=29.1
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|.-+|..|++.+.+ |+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~-----V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFS-----VAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCE-----EEEEcCCC
Confidence 4799999999999999999987654 99999875
No 422
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.56 E-value=0.039 Score=55.88 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=28.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||||.+|.=+|..|++.+.+ |+++.+.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~-----v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRS-----VAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc-----EEEEcCCC
Confidence 699999999999999999988765 99999875
No 423
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.55 E-value=0.017 Score=55.03 Aligned_cols=45 Identities=22% Similarity=0.472 Sum_probs=36.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC--CcCccccCCCcCce
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD--SIGGIWKSCSYNST 49 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~--~~GG~w~~~~~~~~ 49 (511)
..||+|||||.+||.||.+| .|.+|+|+|++. .+||+-.. .+-++
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfW-SfGGL 53 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFW-SFGGL 53 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeee-ecccE
Confidence 47999999999999999999 999999999854 47776444 34443
No 424
>PRK08244 hypothetical protein; Provisional
Probab=95.54 E-value=0.049 Score=57.21 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=30.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..|+|||+|.+|.-+|..|++.+.. |+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~-----v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVK-----TCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 3699999999999999999998765 999999864
No 425
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.53 E-value=0.009 Score=59.16 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=35.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
..+|++|||+|..||.+|..| .+.+|+++|++..+||.-..
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavt 55 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVT 55 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceee
Confidence 358999999999999999999 88999999999777775443
No 426
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.45 E-value=0.15 Score=52.23 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=34.1
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC----ceeec
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT----HWTVP 240 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~----~~~~p 240 (511)
..++|+|||+|.||.-.|..|.+.+.. ++++.|++ .|..+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~-----v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHE-----VVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCC-----ceEEEecCCccceEeec
Confidence 468999999999999999999998765 99999985 46554
No 427
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.44 E-value=0.79 Score=47.99 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=26.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~ 36 (511)
.++|+|||+|..|+.+|..+ .+ .+|+++|..+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 47899999999999987766 55 46999987654
No 428
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.43 E-value=0.048 Score=55.58 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=30.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||||.+|.=+|..|++.+.. |+++.|.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~-----V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA-----VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-----EEEEecCCc
Confidence 6899999999999999999988765 999999864
No 429
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.42 E-value=0.045 Score=60.05 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=33.8
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.-.|++|+|||+|++|.-.|..|.+.++. |++..|+.+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~-----v~vyer~dr 1819 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHT-----VTVYERSDR 1819 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcE-----EEEEEecCC
Confidence 34789999999999999999999999876 999999864
No 430
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.28 E-value=0.041 Score=50.08 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=29.9
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
..+++|+|||||..|.-.+..|.+.+.. |+++.+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~-----V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAH-----IVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe-----EEEEcC
Confidence 6789999999999999999999988754 998865
No 431
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.27 E-value=0.018 Score=58.14 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=28.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+||+|||+|++|+++|..+ .|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5899999999999999999 889999999865
No 432
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.25 E-value=0.061 Score=54.65 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=28.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHh---cCCCCCCcEEEEEec
Q 010421 198 KKVAVVGFKKSAIDLAKECAES---NQGPEGQPCTMIVRT 234 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~---~~~~~~~~Vtl~~R~ 234 (511)
-+|+|||+|.+|.=+|..|++. +.. |+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~-----v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLP-----VALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCE-----EEEEeCC
Confidence 3699999999999999999987 654 9999995
No 433
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.24 E-value=0.035 Score=56.30 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=28.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
+|+|||+|++|.-+|..|++.+.+ |.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~-----V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE-----TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-----EEEEECC
Confidence 599999999999999999988764 9999987
No 434
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.24 E-value=0.032 Score=56.93 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=26.7
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
-.|+|||||..|+|.|...++.+.+ +.++.-.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~k-----tlLlT~~ 36 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAK-----TLLLTLN 36 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCe-----EEEEEcC
Confidence 4699999999999999999998865 6666554
No 435
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.22 E-value=0.061 Score=52.82 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=63.8
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCc-EEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNP-VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v-~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
++.|.|||.|+-|-..|..| .|.+| -||+.....+ .. -.
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~--------------------------------ki--LP 392 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME--------------------------------KI--LP 392 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh--------------------------------hh--hH
Confidence 46899999999999999988 23333 3554421110 00 11
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+-+.++-..-+++-|+ .++-|..|.++... .+...+.+.++. ++..|.||+|+|
T Consensus 393 eyls~wt~ekir~~GV--~V~pna~v~sv~~~----------------~~nl~lkL~dG~-----~l~tD~vVvavG--- 446 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGV--DVRPNAKVESVRKC----------------CKNLVLKLSDGS-----ELRTDLVVVAVG--- 446 (659)
T ss_pred HHHHHHHHHHHHhcCc--eeccchhhhhhhhh----------------ccceEEEecCCC-----eeeeeeEEEEec---
Confidence 1223333344556677 78889999888862 334457777776 899999999999
Q ss_pred CCCCC
Q 010421 157 DVPII 161 (511)
Q Consensus 157 ~~p~~ 161 (511)
..|+.
T Consensus 447 ~ePN~ 451 (659)
T KOG1346|consen 447 EEPNS 451 (659)
T ss_pred CCCch
Confidence 56765
No 436
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.18 E-value=0.12 Score=53.52 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCchhhhhccCeEEEEeCceeEE--eCCc----EEEcCCceeeccEEEEecCCCCc
Q 010421 323 PEGFFSEAEKGKIVFKRASKWWF--WKGG----LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 323 ~~~~~~~l~~g~v~v~~~~i~~~--~~~~----v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
..-+.+...+-+|+++.+.|..+ ++++ |++++|+++++|.+|=|||++..
T Consensus 157 d~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 33444555556799888886544 4444 67889999999999999999763
No 437
>PRK07190 hypothetical protein; Provisional
Probab=95.17 E-value=0.031 Score=58.38 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=29.9
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..|+|||+|.+|.=+|..|++.+.. |.++.|.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~-----V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN-----TVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC-----EEEEeCCCc
Confidence 3699999999999999999988765 999999864
No 438
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.10 E-value=0.017 Score=61.26 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=27.9
Q ss_pred eEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDS 36 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~ 36 (511)
|++|||||.+|+.+|.+| .+ ++|+|+|+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 799999999999999999 55 79999999753
No 439
>PLN02785 Protein HOTHEAD
Probab=95.08 E-value=0.022 Score=60.79 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~ 36 (511)
.+|++|||||.+|+.+|.+| .+.+|+|+|+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence 58999999999999999999 7789999999763
No 440
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.2 Score=48.30 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCCeEEEECCCHHHHHHHHhccCC--CcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.+||+|||+|-+|+.||.-|.|+ .|+++|=.+.+ ..+++
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------------------------------kAD~V- 394 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------------------------------KADAV- 394 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh-------------------------------------hhHHH-
Confidence 358999999999999999999654 68898865332 11222
Q ss_pred HHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 81 DYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 81 ~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
|++-... -++ .|..|..-+.|.-.. +..--+..++..+++.+.+.-+-|++-.|. .|
T Consensus 395 --Lq~kl~sl~Nv--~ii~na~Ttei~Gdg---------------~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL---~P 452 (520)
T COG3634 395 --LQDKLRSLPNV--TIITNAQTTEVKGDG---------------DKVTGLEYRDRVSGEEHHLELEGVFVQIGL---LP 452 (520)
T ss_pred --HHHHHhcCCCc--EEEecceeeEEecCC---------------ceecceEEEeccCCceeEEEeeeeEEEEec---cc
Confidence 2222222 233 566666666665421 111125566666677777888889999994 56
Q ss_pred CCC
Q 010421 160 IIP 162 (511)
Q Consensus 160 ~~p 162 (511)
+.-
T Consensus 453 NT~ 455 (520)
T COG3634 453 NTE 455 (520)
T ss_pred Chh
Confidence 653
No 441
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.02 E-value=0.1 Score=48.29 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.8
Q ss_pred eCCcEEEcCCceeeccEEEEecCCCCcc
Q 010421 346 WKGGLEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 346 ~~~~v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
++..|++++|.++.++-+++||||+|..
T Consensus 79 ~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 79 SEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred ccceEEecCCceeeEEEEEEecCCCcce
Confidence 3556999999999999999999999964
No 442
>PRK06126 hypothetical protein; Provisional
Probab=94.96 E-value=0.033 Score=59.30 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|.=+|..|++.+.+ |+++.|.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~-----v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVD-----SILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 35799999999999999999998765 999999863
No 443
>PRK08013 oxidoreductase; Provisional
Probab=94.94 E-value=0.026 Score=57.56 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=30.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|.=+|..|++.+.+ |+++.|++.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~-----v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLR-----VAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCE-----EEEEeCCCC
Confidence 4799999999999999999988764 999999875
No 444
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.82 E-value=0.084 Score=55.59 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=25.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|.+|.-.|..| ...+|++.-|+
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 57999999999999999999 44567777664
No 445
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.76 E-value=0.18 Score=51.38 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=61.7
Q ss_pred EEECCCHHHHHHH-H---hc---cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 8 AIIGAGVSGLAAV-K---QL---RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 8 ~IIGaG~aGl~aa-~---~l---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+|++-|.-|+..+ . .| .|.+|++++..+. ..++.++.
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp------------------------------------slpG~rL~ 262 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP------------------------------------SVPGLRLQ 262 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC------------------------------------CCchHHHH
Confidence 5677777777666 2 22 5889999987532 12234677
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+.+..++.+. .+..+++|.+++.. ++...+.... +++...+.+|.||+|||.+
T Consensus 263 ~aL~~~l~~~Gv--~I~~g~~V~~v~~~----------------~~~V~~v~~~--~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 263 NALRRAFERLGG--RIMPGDEVLGAEFE----------------GGRVTAVWTR--NHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHhCCC--EEEeCCEEEEEEEe----------------CCEEEEEEee--CCceEEEECCEEEEeCCCc
Confidence 788888877888 89999999999873 2222222222 2333478999999999954
No 446
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.65 E-value=0.14 Score=52.89 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=30.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||||++|.-+|..|++.+.. |.++.|.+.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~-----VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE-----TFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-----EEEEecCCC
Confidence 4799999999999999999988765 999999753
No 447
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.58 E-value=0.1 Score=53.10 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=29.3
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||+|++|.-+|..|++.+.+ |.++.|.+.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-----V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-----TFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-----EEEEecCCC
Confidence 699999999999999999988765 999998753
No 448
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.48 E-value=0.077 Score=48.71 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=28.8
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
.++++|+|||||..|..=+..|.+.++. ||++..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~-----VtVVap 56 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCY-----VYILSK 56 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCE-----EEEEcC
Confidence 5688999999999999988888887765 888854
No 449
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.43 E-value=0.15 Score=51.15 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=26.1
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
-.|+|||||..|+|.|.+.++.|+. .+++..+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~-----TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGAR-----TLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCc-----eEEeecc
Confidence 3699999999999999999998875 5555443
No 450
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=94.43 E-value=0.052 Score=55.85 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=25.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||||.+|+-.|..+++.+.+ |.|+.|.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~-----VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK-----VLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS------EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCE-----EEEEECCcc
Confidence 389999999999999999998865 999998763
No 451
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.42 E-value=0.053 Score=55.25 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=27.1
Q ss_pred EEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 201 AVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 201 ~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|||+|.+|+=.|..+++.+.. |+++.|.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~-----V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLS-----VLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCc-----EEEEecCcc
Confidence 5999999999999999987654 999999765
No 452
>PRK10015 oxidoreductase; Provisional
Probab=94.38 E-value=0.04 Score=56.66 Aligned_cols=34 Identities=21% Similarity=0.067 Sum_probs=29.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-.|+|||+|++|.=+|..|++.+.+ |.++.|.+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~-----VlliEr~~~ 39 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLD-----VLVIERGDS 39 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCe-----EEEEecCCC
Confidence 3699999999999999999988764 999999764
No 453
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.33 E-value=0.11 Score=55.28 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=30.7
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|.=+|..|++.+.. |+++.|.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~-----v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVR-----VLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 35799999999999999999988765 999999864
No 454
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=94.27 E-value=0.078 Score=56.47 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.1
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
...+|+|||+|.+|.=+|..|++.+.. |+++.|.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~-----v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP-----VVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc-----EEEEeCCCC
Confidence 345799999999999999999988765 999999864
No 455
>PRK07538 hypothetical protein; Provisional
Probab=94.27 E-value=0.18 Score=51.62 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=29.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||||.+|.=+|..|++.+.. |+++.|++.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE-----VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-----EEEEEcCCc
Confidence 699999999999999999988765 999999864
No 456
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.20 E-value=0.65 Score=48.91 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-.|+|||+|.+|+=.|..+++.+.+ |.++.+.+.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~-----VivlEK~~~ 95 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMN-----PVILEKMPV 95 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC-----EEEEECCCC
Confidence 3699999999999999999988765 999998764
No 457
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.13 E-value=0.043 Score=56.34 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.2
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+++|+|||+|+.|...|..|++.+.. ||++.|.+
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~-----Vtv~e~~~ 156 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHD-----VTVFERVA 156 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCe-----EEEeCCcC
Confidence 5679999999999999999999999875 99988865
No 458
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.10 E-value=0.053 Score=55.18 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=32.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|+..+||+|+|.|..-...|..| .|.+|+.+|+++..||.|..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 78889999999999998888888 99999999999999999886
No 459
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.09 E-value=0.24 Score=50.76 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=27.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+=.|..+++.+.+ |.++.+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~-----V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAK-----VLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT------EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCe-----EEEEEeecc
Confidence 389999999999999999998765 999999764
No 460
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=94.06 E-value=0.18 Score=49.92 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.9
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||||.+|.-.|..|.+.+-. |.++.++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~-----v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGID-----VVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCe-----EEEEeecc
Confidence 5799999999999999999998875 88887754
No 461
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.92 E-value=0.17 Score=51.01 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||||.+|.-+|..|++.+.+ |+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~-----v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIK-----TTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCe-----EEEecCCC
Confidence 599999999999999999988764 99999864
No 462
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.69 E-value=0.062 Score=56.14 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~ 37 (511)
..+|.+|||||.||...|.+| ...+|.++|+....
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 468999999999999999999 55899999997665
No 463
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.65 E-value=0.083 Score=49.76 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=25.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc---------cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL---------RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l---------~g~~v~v~e~~ 34 (511)
+..+|+|||+|..||++|..+ +..+|+|++.+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 457999999999999999666 33578888765
No 464
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=93.44 E-value=0.64 Score=48.00 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhc-CCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESN-QGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~-~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+=.|..+++.+ .+ |+++.+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~-----V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAAN-----VVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcc-----EEEEecCCC
Confidence 4899999999999999999887 55 999998764
No 465
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.25 E-value=0.16 Score=53.90 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=65.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
..-+|||+|.-||.+|..| .|.++.|++-.+.+ +. ...+... ...
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l---------------------------Me---rQLD~~a---g~l 192 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL---------------------------ME---RQLDRTA---GRL 192 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH---------------------------HH---HhhhhHH---HHH
Confidence 4569999999999999999 89999999875432 00 0111122 244
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
|+...++.++ .+++++.++.+... +..-.+.+.++. .+.+|.||.|+|. .|+.
T Consensus 193 L~~~le~~Gi--~~~l~~~t~ei~g~----------------~~~~~vr~~DG~-----~i~ad~VV~a~GI---rPn~ 245 (793)
T COG1251 193 LRRKLEDLGI--KVLLEKNTEEIVGE----------------DKVEGVRFADGT-----EIPADLVVMAVGI---RPND 245 (793)
T ss_pred HHHHHHhhcc--eeecccchhhhhcC----------------cceeeEeecCCC-----cccceeEEEeccc---cccc
Confidence 5666677777 66676666555431 122246666665 7899999999995 4554
No 466
>PRK06996 hypothetical protein; Provisional
Probab=93.25 E-value=0.18 Score=51.41 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|||||.+|.-+|..|++.+.. .+.+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~-~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSAT-RALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCc-CCceEEEecCCC
Confidence 35799999999999999999987520 012599999975
No 467
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.20 E-value=0.089 Score=45.84 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=27.7
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|||||..|.++|..| .|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 589999999999999999 889999999963
No 468
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=92.99 E-value=0.092 Score=54.23 Aligned_cols=47 Identities=9% Similarity=0.156 Sum_probs=34.5
Q ss_pred hhhhhcc-C--eEEEEeCc-eeEEe---------CCc--EEEcCCceeeccEEEEecCCCCc
Q 010421 326 FFSEAEK-G--KIVFKRAS-KWWFW---------KGG--LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 326 ~~~~l~~-g--~v~v~~~~-i~~~~---------~~~--v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+++.+.+ + +++++.+. +.+++ +++ |++.+|+++.+|.||-|-|-...
T Consensus 123 L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 123 LYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4454444 3 58888775 66664 223 67789999999999999999874
No 469
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=92.84 E-value=0.25 Score=49.76 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..++++|||||.+|++.|.+|++.|-+ |+++.+.|.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~-----v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFK-----VYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCe-----EEEEecCCc
Confidence 467999999999999999999999875 999999875
No 470
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.77 E-value=0.11 Score=41.51 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
+.++|+|||+|..|..-+..| .|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 357899999999999999999 88999999986
No 471
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.67 E-value=0.12 Score=47.86 Aligned_cols=32 Identities=38% Similarity=0.609 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
++++|||+|.-|...|..| .|++|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999 8899999999743
No 472
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.62 E-value=0.15 Score=49.51 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|.+.++|+|||+|.-|...|..| .|++|+++|++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 55668999999999999999999 899999999863
No 473
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.50 E-value=0.12 Score=52.19 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=31.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
++|+|||||..|+++|..|++.+.. |+++.+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~-----V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP-----VELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-----EEEEEccCcc
Confidence 5799999999999999999998765 9999987653
No 474
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.44 E-value=0.18 Score=46.04 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=28.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||||..|...+..| .|.+|+|+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47899999999999999999 89999999874
No 475
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=92.40 E-value=0.12 Score=37.85 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.6
Q ss_pred EECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 202 VVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 202 VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
|||+|.+|+-.|..|++.+. +|+++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-----~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-----RVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-----EEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-----cEEEEecCcc
Confidence 89999999999999999865 4999999864
No 476
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.29 E-value=0.15 Score=43.92 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhh
Q 010421 200 VAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLS 279 (511)
Q Consensus 200 V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 279 (511)
|+|+|+|..|.=+|..|++.+.. |+++.|++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-----V~l~~r~~~------------------------------------------- 32 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-----VTLVSRSPR------------------------------------------- 32 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-----EEEEESHHH-------------------------------------------
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-----eEEEEcccc-------------------------------------------
Q ss_pred hhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEcCC--ce
Q 010421 280 PLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDN--TK 357 (511)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~dG--~~ 357 (511)
.+.+++..+++....-...........+- ..
T Consensus 33 -----------------------------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 33 -----------------------------------------------LEAIKEQGLTITGPDGDETVQPPIVISAPSADA 65 (151)
T ss_dssp -----------------------------------------------HHHHHHHCEEEEETTEEEEEEEEEEESSHGHHH
T ss_pred -----------------------------------------------HHhhhheeEEEEecccceecccccccCcchhcc
Q ss_pred eeccEEEEec
Q 010421 358 LEADVVILCT 367 (511)
Q Consensus 358 ~~~D~VI~aT 367 (511)
-++|+||+||
T Consensus 66 ~~~D~viv~v 75 (151)
T PF02558_consen 66 GPYDLVIVAV 75 (151)
T ss_dssp STESEEEE-S
T ss_pred CCCcEEEEEe
No 477
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=92.16 E-value=0.36 Score=49.15 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=29.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-.|+|||+|++|.-+|..|++.+.+ |.++.|...
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~-----VlvlEk~~~ 37 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLD-----VLVLEKGSE 37 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCe-----EEEEecCCC
Confidence 3699999999999999999998854 999999764
No 478
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.94 E-value=0.17 Score=45.11 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=25.6
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|||||..|...|..+ .|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 589999999999999888 999999999964
No 479
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=91.92 E-value=0.72 Score=44.32 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=32.1
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
+.|-|||+|..|-|.|..+++.+.. |.+..-+|.-..|.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~-----V~L~EMRp~k~Tpa 42 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVP-----VILYEMRPVKGTPA 42 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCc-----EEEEEcccccCCCc
Confidence 4699999999999999999999865 99887766544444
No 480
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=91.91 E-value=0.15 Score=51.74 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=30.3
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
+|+|||||.+|+++|..|++.+.. |+++.+++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~-----V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVP-----VILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc-----EEEEeccccc
Confidence 699999999999999999998765 9999987653
No 481
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=91.85 E-value=0.14 Score=48.89 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+...|-|||||.+|-.||.++ .|++|.++|.++.-
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 356799999999999999999 99999999987543
No 482
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.78 E-value=0.068 Score=42.83 Aligned_cols=36 Identities=33% Similarity=0.270 Sum_probs=29.3
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.++++|+|||+|..|..-+..|.+.+.+ |+++.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~-----v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAK-----VTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBE-----EEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCE-----EEEECCch
Confidence 5789999999999999999888887764 99987753
No 483
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.69 E-value=0.2 Score=49.04 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=31.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|++.++|.|||+|..|...|..| .|++|+++|++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 77778999999999999999999 889999999853
No 484
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.67 E-value=2.5 Score=45.35 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=27.7
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+=.|..+++.+.. .+|.++.+.+
T Consensus 5 DVlVIG~G~AGl~AAi~aa~~g~g---~~V~vleK~~ 38 (575)
T PRK05945 5 DVVIVGGGLAGCRAALEIKRLDPS---LDVAVVAKTH 38 (575)
T ss_pred cEEEECccHHHHHHHHHHHHhcCC---CcEEEEeccC
Confidence 599999999999999999876421 2599998864
No 485
>PRK06175 L-aspartate oxidase; Provisional
Probab=91.67 E-value=0.89 Score=46.82 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=25.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+=.|..++ .+. +|.++.+.+.
T Consensus 6 DVvVVG~G~AGl~AA~~a~-~G~-----~V~lleK~~~ 37 (433)
T PRK06175 6 DVLIVGSGVAGLYSALNLR-KDL-----KILMVSKGKL 37 (433)
T ss_pred cEEEECchHHHHHHHHHhc-cCC-----CEEEEecCCC
Confidence 6999999999998888764 343 4999998764
No 486
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=91.59 E-value=1.4 Score=46.29 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=26.4
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+-.|..+++.+ . |+++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G-----~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQG-----R-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCC-----C-EEEEEccC
Confidence 5999999999999998888754 2 89998875
No 487
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=91.57 E-value=0.43 Score=48.25 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+...+.+.+.+ +. .+.++++|.+++.. ++.|.|.+.++. .+.+|+||+|+|.
T Consensus 133 dp~~~~~~l~~~~~~-G~--~i~~~~~V~~i~~~----------------~~~~~v~t~~g~-----~~~a~~vV~a~G~ 188 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RL--TLHFNTEITSLERD----------------GEGWQLLDANGE-----VIAASVVVLANGA 188 (381)
T ss_pred ChHHHHHHHHhccCC-Cc--EEEeCCEEEEEEEc----------------CCeEEEEeCCCC-----EEEcCEEEEcCCc
Confidence 445555556666666 66 78899999999872 445777766553 5899999999998
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
.+
T Consensus 189 ~~ 190 (381)
T TIGR03197 189 QA 190 (381)
T ss_pred cc
Confidence 73
No 488
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.48 E-value=0.23 Score=41.99 Aligned_cols=38 Identities=32% Similarity=0.323 Sum_probs=33.4
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..++++|+|||+|-+|--++..|+..+. ++|+++.|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~----~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGA----KEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTS----SEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCC----CEEEEEECCH
Confidence 4689999999999999999999999865 3699999975
No 489
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.38 E-value=0.21 Score=43.48 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=29.7
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
..+|++|+|||||..|...+..|.+.+.. |+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~-----V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF-----VTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCE-----EEEEc
Confidence 36899999999999999999999988765 99883
No 490
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.36 E-value=0.27 Score=42.71 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=27.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA 33 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~ 33 (511)
.++|+|||||..|..-+..| .|.+|+|+++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 47899999999999999998 8999999964
No 491
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=91.35 E-value=2.3 Score=41.16 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+.-.|+|||+|.-|.-.|.+|++.+.+ +-++.+-+
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~k-----illLeqf~ 40 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDK-----ILLLEQFP 40 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCe-----EEEEeccC
Confidence 445799999999999999999999864 77777654
No 492
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.23 E-value=0.2 Score=52.11 Aligned_cols=32 Identities=38% Similarity=0.467 Sum_probs=28.9
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+|+|||+|.+|+++|+.| .|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 689999999999999999 99999999987543
No 493
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.23 E-value=3.1 Score=44.67 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=27.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+=.|..+++.+.. ..+|.++.+.+
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~--~~~V~lleK~~ 41 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGG--KLSVAVVSKTQ 41 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCC--CCcEEEEEccc
Confidence 599999999999999999887620 01499998865
No 494
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.17 E-value=0.27 Score=50.78 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=31.6
Q ss_pred hccCCCcEEEECCCCC-HHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 193 QLLKDKKVAVVGFKKS-AIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 193 ~~~~~k~V~VvG~G~s-g~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+.||+|+|-|||-| |-|++..+++.+. +++.++.|+.
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p----~~i~l~~~~E 285 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKFNP----KEIILFSRDE 285 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhcCC----CEEEEecCch
Confidence 3478999999986655 9999999998754 4799998874
No 495
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.14 E-value=0.23 Score=47.99 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.+|+|||+|.-|...|..+ .|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5899999999999999998 9999999999743
No 496
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.01 E-value=0.16 Score=51.88 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=27.0
Q ss_pred HHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 14 VSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 14 ~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.|||+||..| .|++|+|+|+++++||....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t 32 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRT 32 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-E
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEE
Confidence 5899999999 99999999999999997665
No 497
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.00 E-value=0.2 Score=44.97 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=25.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
++|+|||.|..||.+|..| .|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 3799999999999999999 9999999998764
No 498
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.89 E-value=0.3 Score=47.50 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=31.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|...++|+|||+|.-|...|..| .|++|+++|++.
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 66667899999999999999999 899999999864
No 499
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=90.79 E-value=2.4 Score=45.75 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=28.0
Q ss_pred cEEEECCCCCHHHHHHHHHHh--cCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAES--NQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~--~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+=.|..+++. +. +|.++.+.+.
T Consensus 13 DVlVIG~G~AGl~AAi~Aae~~~G~-----~V~lieK~~~ 47 (608)
T PRK06854 13 DILIIGGGMAGCGAAFEAKEWAPDL-----KVLIVEKANI 47 (608)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCC-----eEEEEECCCc
Confidence 699999999999999999886 54 4999988753
No 500
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.78 E-value=0.33 Score=44.20 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..++|+|||||-.|...|..| .|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 357999999999999999998 88999999863
Done!