BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010422
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/522 (42%), Positives = 306/522 (58%), Gaps = 60/522 (11%)
Query: 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQF-LFHAGFCRDGKLIGV 64
IL+ R+ LP+ + ++ + N I++ VGETGSGKTTQ+PQF LF + +
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 65 TQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPY 115
TQP EE V+LG+ VGYSIRF+++TS T +K EA+ D
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205
Query: 116 LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSXXXXXXXXSDMILDRGNDT 175
LSRYS II+DEAHERT+ TD+L+GLLK+V R
Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD------------------------- 240
Query: 176 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 235
LK+IIMSA+LDA F YF A + V GR +PVE+ YT +
Sbjct: 241 ----------------LKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQR 284
Query: 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASRKLVTVPI 293
DYLD+ + T+ Q+H E GDIL+FLTG++EIE R + QL E L P+
Sbjct: 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPL 344
Query: 294 FSSLPSEQQMRVFAPAAAGF-----RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348
+ SLP QQ R+F PA RKV+++TNIAETS+TI GI YV+DPGF K ++Y+P
Sbjct: 345 YGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNP 404
Query: 349 VKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTKPEIKRCNLSN 407
+ESLLV PISKA A QR+GRAGR PGKCFRLY E F K L + + PEI R NLS+
Sbjct: 405 RIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSS 464
Query: 408 VILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLD 467
+L+LK LG+DD++ FDFM+ P+ +++++LE+L L L D+ L+ P+G ++ PLD
Sbjct: 465 TVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT-PLGRLASQFPLD 523
Query: 468 PIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRG 509
P+ + LI + +F C +E+L VAMLSV ++F R + +R
Sbjct: 524 PMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRA 565
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/522 (42%), Positives = 306/522 (58%), Gaps = 60/522 (11%)
Query: 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQF-LFHAGFCRDGKLIGV 64
IL+ R+ LP+ + ++ + N I++ VGETGSGKTTQ+PQF LF + +
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 65 TQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPY 115
TQP EE V+LG+ VGYSIRF+++TS T +K EA+ D
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205
Query: 116 LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSXXXXXXXXSDMILDRGNDT 175
LSRYS II+DEAHERT+ TD+L+GLLK+V R
Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD------------------------- 240
Query: 176 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 235
LK+IIMSA+LDA F YF A + V GR +PVE+ YT +
Sbjct: 241 ----------------LKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQR 284
Query: 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASRKLVTVPI 293
DYLD+ + T+ Q+H E GDIL+FLTG++EIE R + QL E L P+
Sbjct: 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPL 344
Query: 294 FSSLPSEQQMRVFAPAAAGF-----RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348
+ SLP QQ R+F PA RKV+++TNIAETS+TI GI YV+DPGF K ++Y+P
Sbjct: 345 YGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNP 404
Query: 349 VKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTKPEIKRCNLSN 407
+ESLLV PISKA A QR+GRAGR PGKCFRLY E F K L + + PEI R NLS+
Sbjct: 405 RIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSS 464
Query: 408 VILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLD 467
+L+LK LG+DD++ FDFM+ P+ +++++LE+L L L D+ L+ P+G ++ PLD
Sbjct: 465 TVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT-PLGRLASQFPLD 523
Query: 468 PIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRG 509
P+ + LI + +F C +E+L VAMLSV ++F R + +R
Sbjct: 524 PMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRA 565
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 13/156 (8%)
Query: 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL-- 61
Q ILQ+R+ LP+ E ++E + +N ++II G TG GKTTQ+PQF+ F ++ +
Sbjct: 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILD-DFIQNDRAAE 109
Query: 62 --IGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDD---RTSTSTRIKEA-----L 111
I VTQP E G E G+ GYS+RF+ R S
Sbjct: 110 CNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRK 169
Query: 112 LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147
L+ + S +IVDE HER ++TD LL +L+ V A
Sbjct: 170 LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 433 SIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAM 492
++I ++EQL+ LGAL D+ L+ +G +MA PL+P+ K LI++ C EEML V+M
Sbjct: 19 TLITAMEQLYTLGALDDEGLLTR-LGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSM 77
Query: 493 LSVESIFFR 501
LSV+++F+R
Sbjct: 78 LSVQNVFYR 86
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 42/194 (21%)
Query: 203 ARGFSEYFG----CAKAVHVQGR----QFPVEILYTLYPEPDYLDATLITIFQVHLDEA- 253
ARG++ CA+ VH+ G +E++YT E + D +T V LD A
Sbjct: 255 ARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISV-LDHAL 313
Query: 254 -------PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 306
PGD +V + + +I SV R ++ R L+ + I+ SLP ++
Sbjct: 314 ESLDNLRPGDCIVCFS-KNDIYSVSRQIEIRGLE---------SAVIYGSLPPGTKL--- 360
Query: 307 APAAAGFR------KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 360
A F K+++AT+ + + I+ +I +K + + KG L PI
Sbjct: 361 -AQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINE--KGEREL--EPI 414
Query: 361 SKAQALQRSGRAGR 374
+ +QALQ +GRAGR
Sbjct: 415 TTSQALQIAGRAGR 428
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 212 CAKAVHVQGRQFPV----EILYTLYPEPDYLDATLITIFQVHLDEA--------PGDILV 259
CA+ VH+ G + E+ YT E + D +T V LD A PGD +V
Sbjct: 268 CAEEVHLCGEPAAIDLVXELXYTTGEEVEVRDYKRLTPISV-LDHALESLDNLRPGDCIV 326
Query: 260 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR----- 314
+ + +I SV R ++ R L+ + I+ SLP ++ A F
Sbjct: 327 CFS-KNDIYSVSRQIEIRGLE---------SAVIYGSLPPGTKL----AQAKKFNDPNDP 372
Query: 315 -KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373
K+++AT+ + + I+ +I +K + + KG L PI+ +QALQ +GRAG
Sbjct: 373 CKILVATDAIGXGLNL-SIRRIIFYSLIKPSINE--KGEREL--EPITTSQALQIAGRAG 427
Query: 374 R 374
R
Sbjct: 428 R 428
>pdb|3K1A|A Chain A, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
pdb|3K1A|C Chain C, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
Length = 491
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS- 326
E VE L+QE L PE +RK + + V PA +K I++ ++
Sbjct: 6 EEVESLIQEVLEVYPEKARK----------DRNKHLAVNDPAVTQSKKCIISNKKSQPGL 55
Query: 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 371
+TI G Y G V + P+K M + P+ Q R+GR
Sbjct: 56 MTIRGCAYAGSKGIV----WGPIKDMIHISHGPVGCGQ-YSRAGR 95
>pdb|3MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|1N2C|A Chain A, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|C Chain C, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1L5H|A Chain A, Femo-Cofactor Deficient Nitrogenase Mofe Protein
pdb|1M1N|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|E Chain E, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|G Chain G, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1Y|A Chain A, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|C Chain C, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|I Chain I, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|K Chain K, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|A Chain A, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|C Chain C, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|I Chain I, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|K Chain K, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|A Chain A, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|C Chain C, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|A Chain A, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|C Chain C, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|I Chain I, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|K Chain K, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|A Chain A, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|C Chain C, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 491
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS- 326
E VE L+QE L PE +RK + + V PA +K I++ ++
Sbjct: 6 EEVESLIQEVLEVYPEKARK----------DRNKHLAVNDPAVTQSKKCIISNKKSQPGL 55
Query: 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 371
+TI G Y G V + P+K M + P+ Q R+GR
Sbjct: 56 MTIRGCAYAGSKGVV----WGPIKDMIHISHGPVGCGQ-YSRAGR 95
>pdb|1G20|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|3U7Q|A Chain A, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
pdb|3U7Q|C Chain C, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
Length = 492
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS- 326
E VE L+QE L PE +RK + + V PA +K I++ ++
Sbjct: 7 EEVESLIQEVLEVYPEKARK----------DRNKHLAVNDPAVTQSKKCIISNKKSQPGL 56
Query: 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 371
+TI G Y G V + P+K M + P+ Q R+GR
Sbjct: 57 MTIRGCAYAGSKGVV----WGPIKDMIHISHGPVGCGQ-YSRAGR 96
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 356
L +Q + A G V++AT++ E + +P + V+ Y+PV
Sbjct: 403 LSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV--------FYEPVP------ 448
Query: 357 VVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK 391
S +++QR GR GR PG+ L + D+
Sbjct: 449 ----SAIRSIQRRGRTGRHMPGRVIILMAKGTRDE 479
>pdb|1FP4|A Chain A, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|1FP4|C Chain C, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
Length = 492
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS- 326
E VE L+QE L PE +RK + + V PA +K I++ ++
Sbjct: 7 EEVESLIQEVLEVYPEKARK----------DRNKHLAVNDPAVTQSKKCIISNKKSQPGL 56
Query: 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 371
+TI G Y G V + P+K M + P+ Q R+GR
Sbjct: 57 MTIRGCAYAGSKGVV----WGPIKDMIHISHGPVGCGQ-YSRAGR 96
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 352
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 65 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YD-LPTL 115
Query: 353 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 392
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 116 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 154
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 352
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 67 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVN--------YD-LPTL 117
Query: 353 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 392
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 118 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 156
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 352
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 66 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVN--------YD-LPTL 116
Query: 353 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 392
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 117 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 155
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55
+E++RK I+ I+G GSGK TQ + + GF
Sbjct: 5 FMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGF 38
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Query: 22 LVEEVRKND---ILIIVGETGSGKTT---QLPQFLFHAGFC 56
L+EE+RK + +++ VG GSGKTT +L +L + GF
Sbjct: 119 LIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFS 159
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 352
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 273 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YD-LPTL 323
Query: 353 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 392
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 324 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 362
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 352
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 273 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YD-LPTL 323
Query: 353 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 392
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 324 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 362
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 226 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILV---FLTGQEEIESVERLVQERLLQLP 282
+ L+ ++P PD ++T ++ LD P LV L G E+ V + + L+ P
Sbjct: 61 QALFKMWPSPDKYPKDILTYTELVLD--PQGQLVEMNRLPGGNEVGMVAFKMTLKTLEYP 118
Query: 283 EASRKL-----VTVPIFSSLPSEQQMRVFAPA---AAGFRKVILATNIAETSVTIPGIKY 334
E + +T I S P E + + A A G +V LA N IK+
Sbjct: 119 EGRDIILISNDITFRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKH 178
Query: 335 VIDPGFVKARLYDPVKGMESLLVVP 359
+ +V DP KG++ L + P
Sbjct: 179 MFQVAWVDPE--DPHKGIKYLYLTP 201
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC 56
E+++K +I+ +VG GSGK TQ + + G+
Sbjct: 4 EKLKKTNIIFVVGGPGSGKGTQCEKIVQKYGYT 36
>pdb|4DT1|B Chain B, Crystal Structure Of The Psy3-Csm2 Complex
Length = 245
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 322 IAETSVTIPGIKYVID----PGFVKARLYDPVKGMESLLVVPISK--AQALQRSGRAGRE 375
I+E + G ++I+ P +L + G E +L++ I +Q QR A
Sbjct: 36 ISEEQESKLGFLHIIESDFKPSVALQKLVNCTTGDEKILIIDIVSIWSQQKQRQHGAIYM 95
Query: 376 GPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASI 434
C + F + L DS ++RC + N QL+ + +D++ +F + I
Sbjct: 96 NSLSCINITGLIVFLELLYDSPMDALRRCQVDNFNFQLRGIVIDNLSFLNFESDKNYDVI 155
Query: 435 -IKSLEQLF 442
+ E+LF
Sbjct: 156 NLSKFEKLF 164
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQL 46
+ Q +KS V K + +R+ ++++++G +GSGK+T L
Sbjct: 27 VHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL 67
>pdb|4EQ6|B Chain B, The Crystal Structure Of Psy3-Csm2 Complex From Budding
Yeast
Length = 256
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 338 PGFVKARLYDPVKGMESLLVVPISK--AQALQRSGRAGREGPGKCFRLYPENEF-DKLED 394
P +L + G E +L++ I +Q QR A C + F + L D
Sbjct: 67 PSVALQKLVNCTTGDEKILIIDIVSIWSQQKQRQHGAIYMNSLSCINITGLIVFLELLYD 126
Query: 395 STKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASI-IKSLEQLF 442
S ++RC + N QL+ + +D++ +F + I + E+LF
Sbjct: 127 SPMDALRRCQVDNFNFQLRGIVIDNLSFLNFESDKNYDVINLSKFEKLF 175
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQL 46
+ Q +KS V K + +R+ ++++++G +GSGK+T L
Sbjct: 6 VHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL 46
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 347 DPVKGMESL-LVVPISKA-QALQRSGRAGREGPGKCFRLY-----PENEFDKLEDSTKPE 399
+PV+ M++L + P K+ R + E K +Y P++ F+K++ S
Sbjct: 70 EPVRQMKALYFISPTPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKASCSKS 129
Query: 400 IKRCNLSNVIL-----QLKALGVDDIIGFDFMEKPSRAS 433
I+RC N+ Q+ L V D + + PS AS
Sbjct: 130 IRRCKEINISFIPQESQVYTLDVPDAFYYCYSPDPSNAS 168
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase
At 2.1 Angstroms Resolution
Length = 195
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC 56
E+++K+ I+ +VG GSGK TQ + + G+
Sbjct: 4 EKLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYT 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,641,550
Number of Sequences: 62578
Number of extensions: 530769
Number of successful extensions: 1679
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1652
Number of HSP's gapped (non-prelim): 38
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)