Query 010422
Match_columns 511
No_of_seqs 335 out of 2930
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 00:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 1.2E-97 3E-102 737.5 40.8 462 4-508 41-511 (674)
2 KOG0923 mRNA splicing factor A 100.0 4.1E-96 9E-101 718.1 38.2 461 4-506 255-726 (902)
3 KOG0924 mRNA splicing factor A 100.0 3.4E-90 7.3E-95 677.4 35.7 461 5-508 347-818 (1042)
4 COG1643 HrpA HrpA-like helicas 100.0 2.7E-86 5.8E-91 695.5 44.4 455 5-507 41-510 (845)
5 KOG0925 mRNA splicing factor A 100.0 4.9E-86 1.1E-90 627.0 37.5 457 3-507 36-507 (699)
6 KOG0926 DEAH-box RNA helicase 100.0 1.1E-80 2.4E-85 619.7 34.1 468 4-504 246-821 (1172)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6.9E-79 1.5E-83 663.5 43.3 446 8-505 61-524 (1283)
8 PRK11131 ATP-dependent RNA hel 100.0 8.8E-79 1.9E-83 660.1 41.3 446 9-506 69-534 (1294)
9 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6E-78 1.3E-82 643.2 43.3 438 13-500 1-448 (819)
10 KOG0920 ATP-dependent RNA heli 100.0 3E-78 6.6E-83 631.1 27.9 461 3-507 162-666 (924)
11 PRK11664 ATP-dependent RNA hel 100.0 2.3E-75 4.9E-80 625.2 42.8 436 12-497 3-450 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 1.5E-55 3.2E-60 460.6 32.2 392 17-479 167-595 (675)
13 PRK02362 ski2-like helicase; P 100.0 1.9E-45 4E-50 398.5 28.9 431 6-493 15-531 (737)
14 PRK01172 ski2-like helicase; P 100.0 1.6E-44 3.4E-49 388.8 25.2 413 11-481 19-494 (674)
15 KOG0921 Dosage compensation co 100.0 4E-44 8.6E-49 361.9 14.7 453 5-502 369-890 (1282)
16 PRK00254 ski2-like helicase; P 100.0 1E-41 2.2E-46 368.5 32.2 432 4-495 13-525 (720)
17 KOG0331 ATP-dependent RNA heli 100.0 2.4E-42 5.1E-47 342.4 22.1 316 6-391 105-452 (519)
18 COG1204 Superfamily II helicas 100.0 2.5E-40 5.5E-45 350.7 22.0 413 14-481 31-528 (766)
19 PRK11776 ATP-dependent RNA hel 100.0 4.6E-40 9.9E-45 339.8 22.9 308 11-391 23-353 (460)
20 KOG0330 ATP-dependent RNA heli 100.0 3.3E-40 7.2E-45 307.2 18.9 306 11-390 80-410 (476)
21 PTZ00110 helicase; Provisional 100.0 1.9E-39 4.1E-44 338.6 22.8 312 7-390 145-487 (545)
22 COG0513 SrmB Superfamily II DN 100.0 1.9E-39 4.1E-44 335.4 22.1 306 10-387 47-380 (513)
23 COG1202 Superfamily II helicas 100.0 8.9E-40 1.9E-44 317.6 17.8 431 4-503 206-689 (830)
24 PRK04837 ATP-dependent RNA hel 100.0 2.3E-39 5E-44 331.0 21.8 313 6-390 22-365 (423)
25 PRK04537 ATP-dependent RNA hel 100.0 6.6E-39 1.4E-43 335.6 24.5 311 7-389 24-366 (572)
26 PRK10590 ATP-dependent RNA hel 100.0 5.6E-39 1.2E-43 330.3 23.1 311 6-390 15-355 (456)
27 PLN00206 DEAD-box ATP-dependen 100.0 4.1E-39 9E-44 335.2 21.2 307 10-390 139-478 (518)
28 KOG0328 Predicted ATP-dependen 100.0 5.5E-39 1.2E-43 286.8 18.2 310 14-392 49-378 (400)
29 PRK11192 ATP-dependent RNA hel 100.0 2E-38 4.3E-43 325.6 25.1 314 5-391 14-356 (434)
30 PRK11634 ATP-dependent RNA hel 100.0 1.8E-38 3.8E-43 334.1 24.1 311 6-389 20-354 (629)
31 TIGR03817 DECH_helic helicase/ 100.0 4.5E-38 9.7E-43 337.4 26.5 317 6-385 28-384 (742)
32 PTZ00424 helicase 45; Provisio 100.0 1.8E-38 3.9E-43 323.5 22.3 307 12-391 48-378 (401)
33 PRK01297 ATP-dependent RNA hel 100.0 3.6E-38 7.9E-43 326.4 23.7 311 7-389 102-444 (475)
34 KOG0333 U5 snRNP-like RNA heli 100.0 4.8E-38 1E-42 302.7 17.7 316 4-389 257-626 (673)
35 TIGR00614 recQ_fam ATP-depende 100.0 3.3E-37 7.1E-42 318.1 24.8 300 12-391 9-337 (470)
36 PLN03137 ATP-dependent DNA hel 100.0 2.8E-36 6.1E-41 321.6 26.2 300 14-391 460-791 (1195)
37 PRK11057 ATP-dependent DNA hel 100.0 1.7E-36 3.6E-41 320.8 24.4 303 5-390 15-346 (607)
38 KOG0952 DNA/RNA helicase MER3/ 100.0 1.6E-36 3.5E-41 312.9 23.5 431 15-497 111-642 (1230)
39 KOG0345 ATP-dependent RNA heli 100.0 8.6E-37 1.9E-41 290.8 19.1 328 5-403 19-383 (567)
40 PRK13767 ATP-dependent helicas 100.0 8.8E-36 1.9E-40 326.0 27.5 310 14-385 32-398 (876)
41 KOG0342 ATP-dependent RNA heli 100.0 1.7E-36 3.8E-41 290.6 18.7 306 11-389 101-439 (543)
42 KOG0348 ATP-dependent RNA heli 100.0 4.9E-36 1.1E-40 289.3 19.9 346 6-407 151-576 (708)
43 TIGR01389 recQ ATP-dependent D 100.0 1.1E-35 2.3E-40 315.7 24.0 294 14-390 13-334 (591)
44 KOG0340 ATP-dependent RNA heli 100.0 1.6E-35 3.4E-40 272.9 20.1 312 7-390 22-364 (442)
45 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-35 2.4E-40 287.8 15.3 312 9-391 86-426 (758)
46 KOG0335 ATP-dependent RNA heli 100.0 9.5E-36 2.1E-40 290.4 14.7 311 11-386 93-443 (482)
47 KOG0338 ATP-dependent RNA heli 100.0 4E-36 8.7E-41 288.3 10.8 309 10-390 199-536 (691)
48 COG1201 Lhr Lhr-like helicases 100.0 1.7E-33 3.7E-38 294.7 26.7 365 12-443 20-438 (814)
49 TIGR00580 mfd transcription-re 100.0 2.3E-33 5.1E-38 303.7 25.4 298 10-387 447-770 (926)
50 COG0514 RecQ Superfamily II DN 100.0 1.3E-33 2.8E-38 285.6 20.5 289 16-390 19-340 (590)
51 KOG0332 ATP-dependent RNA heli 100.0 2.2E-33 4.7E-38 260.3 19.7 310 10-387 108-443 (477)
52 KOG0951 RNA helicase BRR2, DEA 100.0 1.7E-33 3.7E-38 293.9 20.3 421 15-485 310-837 (1674)
53 PRK09751 putative ATP-dependen 100.0 8.5E-34 1.8E-38 314.9 18.0 289 34-381 1-379 (1490)
54 KOG0336 ATP-dependent RNA heli 100.0 1E-33 2.3E-38 264.9 14.8 309 10-391 238-576 (629)
55 PRK10917 ATP-dependent DNA hel 100.0 2.6E-32 5.6E-37 291.9 25.8 296 11-385 258-587 (681)
56 KOG0326 ATP-dependent RNA heli 100.0 4.2E-34 9.1E-39 259.7 10.0 304 14-391 107-433 (459)
57 KOG0341 DEAD-box protein abstr 100.0 8.1E-34 1.7E-38 264.0 9.1 315 3-389 181-530 (610)
58 TIGR00643 recG ATP-dependent D 100.0 8.5E-32 1.8E-36 286.2 25.9 298 11-384 232-563 (630)
59 PRK10689 transcription-repair 100.0 6.3E-32 1.4E-36 298.7 24.8 297 10-386 596-918 (1147)
60 KOG0947 Cytoplasmic exosomal R 100.0 2.6E-32 5.7E-37 278.8 19.1 321 11-387 294-723 (1248)
61 KOG0948 Nuclear exosomal RNA h 100.0 1.3E-32 2.8E-37 274.6 15.2 321 12-387 127-539 (1041)
62 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.9E-31 6.4E-36 279.5 24.9 294 11-376 12-378 (844)
63 TIGR01587 cas3_core CRISPR-ass 100.0 6.2E-31 1.3E-35 263.7 21.3 284 31-388 1-337 (358)
64 KOG0347 RNA helicase [RNA proc 100.0 9.5E-34 2.1E-38 274.4 0.0 319 3-390 192-573 (731)
65 COG1111 MPH1 ERCC4-like helica 100.0 4E-30 8.6E-35 249.0 24.1 311 11-387 12-481 (542)
66 KOG0339 ATP-dependent RNA heli 100.0 1.9E-31 4.2E-36 256.0 14.9 305 13-391 244-579 (731)
67 KOG0344 ATP-dependent RNA heli 100.0 1.3E-31 2.7E-36 263.2 13.6 336 12-414 156-523 (593)
68 COG4581 Superfamily II RNA hel 100.0 5.4E-31 1.2E-35 279.6 17.7 322 10-386 115-536 (1041)
69 KOG0350 DEAD-box ATP-dependent 100.0 3.9E-30 8.5E-35 247.0 19.1 344 7-389 152-542 (620)
70 COG1205 Distinct helicase fami 100.0 5.2E-30 1.1E-34 276.1 20.1 317 10-385 66-420 (851)
71 KOG0346 RNA helicase [RNA proc 100.0 2.8E-30 6E-35 244.3 15.7 308 10-389 37-412 (569)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 6.2E-29 1.3E-33 246.8 22.6 278 18-373 1-357 (357)
73 KOG0354 DEAD-box like helicase 100.0 6.6E-29 1.4E-33 254.2 20.9 116 250-386 409-528 (746)
74 KOG0327 Translation initiation 100.0 6.6E-30 1.4E-34 239.3 12.0 302 14-391 48-374 (397)
75 KOG0334 RNA helicase [RNA proc 100.0 1.3E-28 2.8E-33 256.9 20.2 306 12-390 385-723 (997)
76 PHA02558 uvsW UvsW helicase; P 100.0 9.6E-28 2.1E-32 249.0 22.4 291 12-379 112-443 (501)
77 KOG4284 DEAD box protein [Tran 100.0 1.1E-28 2.5E-33 243.0 14.4 308 11-387 44-379 (980)
78 KOG0351 ATP-dependent DNA heli 99.9 6.1E-27 1.3E-31 250.5 20.5 299 15-391 265-596 (941)
79 KOG0352 ATP-dependent DNA heli 99.9 3.3E-27 7.1E-32 222.7 14.0 300 16-391 22-366 (641)
80 KOG0950 DNA polymerase theta/e 99.9 1.6E-27 3.4E-32 245.8 12.9 323 12-390 221-614 (1008)
81 PRK13766 Hef nuclease; Provisi 99.9 8.6E-26 1.9E-30 248.1 24.4 108 252-386 363-478 (773)
82 PRK09694 helicase Cas3; Provis 99.9 3.3E-25 7.2E-30 238.0 24.7 293 12-376 284-663 (878)
83 KOG0337 ATP-dependent RNA heli 99.9 8.1E-27 1.7E-31 219.9 9.2 304 13-389 42-370 (529)
84 PRK09401 reverse gyrase; Revie 99.9 6.1E-26 1.3E-30 251.9 17.3 307 11-373 77-429 (1176)
85 TIGR00603 rad25 DNA repair hel 99.9 9.5E-25 2E-29 228.3 21.8 293 12-389 253-609 (732)
86 PRK12898 secA preprotein trans 99.9 1.2E-24 2.6E-29 225.0 21.8 164 193-388 410-587 (656)
87 PRK14701 reverse gyrase; Provi 99.9 2E-25 4.3E-30 252.8 15.9 319 11-388 76-457 (1638)
88 COG1200 RecG RecG-like helicas 99.9 1.2E-24 2.6E-29 220.0 17.8 299 11-388 259-592 (677)
89 TIGR03714 secA2 accessory Sec 99.9 1E-23 2.2E-28 220.6 25.3 163 192-388 360-538 (762)
90 PRK09200 preprotein translocas 99.9 7.9E-24 1.7E-28 223.5 24.4 163 193-388 365-542 (790)
91 PRK05580 primosome assembly pr 99.9 2.2E-24 4.7E-29 230.1 20.5 311 12-384 142-546 (679)
92 TIGR00595 priA primosomal prot 99.9 5.4E-24 1.2E-28 219.2 17.5 286 33-382 1-376 (505)
93 COG4098 comFA Superfamily II D 99.9 4E-23 8.7E-28 190.6 20.2 296 15-383 98-412 (441)
94 TIGR00963 secA preprotein tran 99.9 8.6E-23 1.9E-27 212.3 23.8 164 193-388 342-518 (745)
95 TIGR01054 rgy reverse gyrase. 99.9 3.6E-23 7.8E-28 230.2 20.2 294 10-344 74-411 (1171)
96 COG1197 Mfd Transcription-repa 99.9 1.5E-22 3.2E-27 215.8 22.9 302 6-387 586-913 (1139)
97 KOG0353 ATP-dependent DNA heli 99.9 1.1E-22 2.3E-27 189.6 17.8 302 15-389 95-469 (695)
98 COG1061 SSL2 DNA or RNA helica 99.9 2.1E-22 4.6E-27 205.0 19.9 286 10-376 32-377 (442)
99 KOG0949 Predicted helicase, DE 99.9 2.1E-22 4.6E-27 207.1 18.7 97 289-402 964-1064(1330)
100 PRK11448 hsdR type I restricti 99.9 6.5E-21 1.4E-25 210.9 22.0 105 253-377 697-802 (1123)
101 PRK04914 ATP-dependent helicas 99.9 1.3E-19 2.7E-24 196.5 25.8 116 244-385 483-603 (956)
102 COG1203 CRISPR-associated heli 99.9 1.5E-20 3.3E-25 202.7 18.6 299 14-385 195-548 (733)
103 PRK12906 secA preprotein trans 99.8 9.8E-20 2.1E-24 191.3 22.3 162 193-387 377-553 (796)
104 TIGR00631 uvrb excinuclease AB 99.8 1.2E-17 2.5E-22 176.5 25.9 127 237-387 427-553 (655)
105 COG1198 PriA Primosomal protei 99.8 8.5E-18 1.8E-22 176.0 17.2 309 13-383 197-599 (730)
106 PRK13104 secA preprotein trans 99.8 4.1E-17 8.9E-22 172.6 21.9 181 193-387 381-587 (896)
107 KOG0953 Mitochondrial RNA heli 99.8 1E-17 2.2E-22 163.9 14.1 277 28-387 190-477 (700)
108 PRK12904 preprotein translocas 99.8 4.2E-17 9E-22 172.3 19.8 169 193-387 367-573 (830)
109 KOG0329 ATP-dependent RNA heli 99.8 9.6E-18 2.1E-22 148.9 12.5 271 13-390 63-358 (387)
110 KOG0349 Putative DEAD-box RNA 99.7 1.8E-17 3.9E-22 157.4 9.9 110 252-385 503-613 (725)
111 PRK05298 excinuclease ABC subu 99.7 6.3E-16 1.4E-20 164.7 16.9 125 238-386 432-556 (652)
112 KOG4150 Predicted ATP-dependen 99.7 1.6E-16 3.4E-21 155.7 11.1 170 190-380 450-633 (1034)
113 PRK13107 preprotein translocas 99.7 6.9E-15 1.5E-19 155.4 22.5 180 193-387 386-591 (908)
114 COG0556 UvrB Helicase subunit 99.7 6.2E-15 1.3E-19 144.3 20.1 169 191-384 386-554 (663)
115 cd00079 HELICc Helicase superf 99.6 9.8E-16 2.1E-20 130.2 10.4 104 253-383 27-131 (131)
116 COG4096 HsdR Type I site-speci 99.6 1.6E-14 3.5E-19 148.9 20.6 329 13-412 164-573 (875)
117 PF00271 Helicase_C: Helicase 99.6 6E-16 1.3E-20 118.8 4.7 72 287-376 7-78 (78)
118 PF00270 DEAD: DEAD/DEAH box h 99.6 1.2E-14 2.7E-19 129.4 12.5 117 16-133 1-134 (169)
119 COG1110 Reverse gyrase [DNA re 99.6 9.1E-14 2E-18 145.7 20.4 287 9-342 77-417 (1187)
120 TIGR00348 hsdR type I site-spe 99.6 8.7E-14 1.9E-18 148.9 19.9 99 254-375 514-634 (667)
121 PRK12900 secA preprotein trans 99.6 2E-14 4.3E-19 152.6 12.5 164 193-389 535-713 (1025)
122 KOG0951 RNA helicase BRR2, DEA 99.5 2.4E-13 5.2E-18 144.4 19.4 323 16-398 1145-1508(1674)
123 PLN03142 Probable chromatin-re 99.5 2.6E-13 5.6E-18 148.3 20.4 110 253-389 486-601 (1033)
124 PF04408 HA2: Helicase associa 99.5 3.3E-14 7.2E-19 114.4 7.1 67 436-503 1-67 (102)
125 PRK12899 secA preprotein trans 99.5 1.4E-12 3.1E-17 138.4 21.0 162 193-387 505-681 (970)
126 cd00268 DEADc DEAD-box helicas 99.5 1.2E-13 2.6E-18 127.0 11.0 118 12-130 19-155 (203)
127 TIGR01407 dinG_rel DnaQ family 99.5 2.1E-12 4.5E-17 142.7 22.7 184 192-384 596-812 (850)
128 TIGR02562 cas3_yersinia CRISPR 99.5 3.5E-12 7.5E-17 136.4 22.2 97 257-377 759-881 (1110)
129 smart00490 HELICc helicase sup 99.4 1.2E-13 2.5E-18 106.9 5.8 72 287-376 11-82 (82)
130 PRK12326 preprotein translocas 99.4 2.8E-11 6E-16 125.5 22.9 162 193-388 364-548 (764)
131 KOG0921 Dosage compensation co 99.4 1.8E-14 4E-19 147.9 -4.3 418 9-478 401-874 (1282)
132 PRK07246 bifunctional ATP-depe 99.4 1.7E-10 3.8E-15 125.9 25.2 179 191-384 573-781 (820)
133 smart00847 HA2 Helicase associ 99.4 1.7E-12 3.7E-17 102.8 7.0 66 436-502 1-67 (92)
134 PRK13103 secA preprotein trans 99.3 1.3E-10 2.9E-15 123.5 18.9 167 193-387 386-591 (913)
135 KOG1123 RNA polymerase II tran 99.3 2.2E-11 4.9E-16 118.4 10.6 118 241-390 531-656 (776)
136 smart00487 DEXDc DEAD-like hel 99.3 6.1E-11 1.3E-15 108.0 13.0 74 11-84 5-79 (201)
137 PF07652 Flavi_DEAD: Flaviviru 99.2 1.1E-11 2.3E-16 103.0 4.6 111 27-146 2-123 (148)
138 PRK12903 secA preprotein trans 99.2 1.7E-09 3.7E-14 114.1 21.1 161 193-387 363-539 (925)
139 PRK08074 bifunctional ATP-depe 99.2 1.9E-09 4.1E-14 120.0 22.1 184 192-384 673-891 (928)
140 cd00046 DEXDc DEAD-like helica 99.1 3.7E-10 8E-15 96.7 10.8 102 30-133 1-118 (144)
141 CHL00122 secA preprotein trans 99.1 1.4E-09 2.9E-14 115.4 16.5 123 193-329 361-490 (870)
142 PRK14873 primosome assembly pr 99.1 9.9E-10 2.1E-14 116.4 15.5 130 33-208 164-310 (665)
143 PF04851 ResIII: Type III rest 99.1 1.2E-10 2.7E-15 104.9 6.4 65 13-82 2-73 (184)
144 KOG0385 Chromatin remodeling c 98.9 5.3E-08 1.1E-12 100.0 18.8 114 253-390 486-602 (971)
145 PRK12902 secA preprotein trans 98.9 6.3E-08 1.4E-12 102.9 20.0 122 193-329 376-505 (939)
146 PF02399 Herpes_ori_bp: Origin 98.9 6.8E-08 1.5E-12 101.6 18.1 292 27-387 47-388 (824)
147 TIGR03117 cas_csf4 CRISPR-asso 98.9 8.6E-07 1.9E-11 93.2 25.0 81 237-329 454-538 (636)
148 KOG0952 DNA/RNA helicase MER3/ 98.8 5E-09 1.1E-13 110.8 6.0 205 30-274 944-1173(1230)
149 KOG0387 Transcription-coupled 98.7 7.4E-07 1.6E-11 92.3 18.0 114 254-390 546-661 (923)
150 COG4889 Predicted helicase [Ge 98.7 4E-08 8.7E-13 102.0 8.7 106 256-379 462-576 (1518)
151 KOG0390 DNA repair protein, SN 98.6 1.7E-06 3.7E-11 91.5 18.9 100 262-387 602-707 (776)
152 KOG1000 Chromatin remodeling p 98.5 8.1E-06 1.8E-10 80.4 16.8 77 252-337 490-568 (689)
153 COG1120 FepC ABC-type cobalami 98.4 2.2E-09 4.8E-14 99.5 -7.9 47 4-50 3-49 (258)
154 PRK12901 secA preprotein trans 98.4 2.2E-06 4.7E-11 92.5 11.9 161 193-387 565-741 (1112)
155 KOG0384 Chromodomain-helicase 98.4 8.7E-06 1.9E-10 88.2 16.0 112 253-391 698-815 (1373)
156 PF00448 SRP54: SRP54-type pro 98.1 8.9E-06 1.9E-10 73.7 8.6 92 30-128 2-93 (196)
157 COG1116 TauB ABC-type nitrate/ 98.1 1.6E-07 3.4E-12 85.7 -3.5 48 3-50 3-50 (248)
158 COG1121 ZnuC ABC-type Mn/Zn tr 98.1 8.2E-08 1.8E-12 88.7 -5.7 50 2-51 3-52 (254)
159 COG0653 SecA Preprotein transl 98.1 4.7E-05 1E-09 81.2 13.7 125 239-388 416-546 (822)
160 PF13245 AAA_19: Part of AAA d 98.0 1.5E-05 3.2E-10 60.0 6.5 55 25-79 6-62 (76)
161 PF13401 AAA_22: AAA domain; P 98.0 5.7E-06 1.2E-10 69.9 3.9 103 27-144 2-111 (131)
162 COG1126 GlnQ ABC-type polar am 97.9 3.8E-06 8.2E-11 74.7 1.8 48 3-50 2-49 (240)
163 COG1122 CbiO ABC-type cobalt t 97.8 6.4E-07 1.4E-11 83.0 -5.2 43 7-49 7-50 (235)
164 COG4525 TauB ABC-type taurine 97.8 4.8E-06 1E-10 72.6 0.5 50 1-50 1-52 (259)
165 COG4604 CeuD ABC-type enteroch 97.8 2E-05 4.4E-10 68.9 4.1 48 3-50 1-48 (252)
166 PRK12723 flagellar biosynthesi 97.8 0.00014 3E-09 72.6 10.5 89 29-130 174-266 (388)
167 COG1125 OpuBA ABC-type proline 97.8 1.6E-07 3.5E-12 85.1 -9.3 105 3-119 1-105 (309)
168 PF13604 AAA_30: AAA domain; P 97.8 6.2E-05 1.3E-09 68.4 7.1 62 15-78 2-65 (196)
169 PRK11747 dinG ATP-dependent DN 97.8 0.0003 6.6E-09 76.3 13.5 178 192-384 457-672 (697)
170 COG2884 FtsE Predicted ATPase 97.7 4.3E-06 9.2E-11 72.7 -1.5 53 3-55 1-54 (223)
171 cd03216 ABC_Carb_Monos_I This 97.7 3.1E-07 6.7E-12 81.0 -9.0 121 9-144 6-128 (163)
172 TIGR00604 rad3 DNA repair heli 97.7 0.00023 4.9E-09 77.8 11.2 184 193-383 443-671 (705)
173 smart00489 DEXDc3 DEAD-like he 97.7 7.4E-05 1.6E-09 72.2 6.6 71 10-80 4-82 (289)
174 smart00488 DEXDc2 DEAD-like he 97.7 7.4E-05 1.6E-09 72.2 6.6 71 10-80 4-82 (289)
175 COG1136 SalX ABC-type antimicr 97.7 3.3E-05 7.1E-10 70.5 3.9 35 17-51 19-53 (226)
176 COG1199 DinG Rad3-related DNA 97.7 0.00065 1.4E-08 74.0 14.1 181 192-384 404-615 (654)
177 COG4152 ABC-type uncharacteriz 97.7 2.1E-06 4.5E-11 77.5 -4.3 47 4-50 3-49 (300)
178 COG3842 PotA ABC-type spermidi 97.7 3.1E-06 6.8E-11 82.4 -3.6 125 2-126 4-162 (352)
179 COG3839 MalK ABC-type sugar tr 97.7 1.6E-06 3.6E-11 83.8 -5.5 51 1-51 1-51 (338)
180 TIGR02768 TraA_Ti Ti-type conj 97.6 0.0043 9.4E-08 67.9 20.1 63 12-76 350-413 (744)
181 PF13086 AAA_11: AAA domain; P 97.6 0.00013 2.8E-09 68.2 7.2 67 15-81 2-75 (236)
182 cd00009 AAA The AAA+ (ATPases 97.6 0.00034 7.4E-09 59.8 9.0 36 18-53 6-43 (151)
183 PRK14722 flhF flagellar biosyn 97.6 0.00029 6.4E-09 69.7 9.1 90 26-128 134-225 (374)
184 COG3638 ABC-type phosphate/pho 97.6 1.8E-06 4E-11 77.6 -5.7 48 2-49 2-50 (258)
185 PRK11889 flhF flagellar biosyn 97.6 0.00056 1.2E-08 67.5 10.7 88 30-129 242-331 (436)
186 COG1124 DppF ABC-type dipeptid 97.6 2.9E-05 6.4E-10 70.5 1.8 49 2-50 2-54 (252)
187 COG1119 ModF ABC-type molybden 97.6 3.9E-05 8.3E-10 69.8 2.2 54 3-56 31-84 (257)
188 COG1419 FlhF Flagellar GTP-bin 97.5 0.00037 8.1E-09 68.5 9.1 88 28-128 202-291 (407)
189 COG4555 NatA ABC-type Na+ tran 97.5 6.8E-05 1.5E-09 66.0 3.5 47 4-50 2-49 (245)
190 PRK14974 cell division protein 97.5 0.00051 1.1E-08 67.3 10.0 93 30-131 141-235 (336)
191 COG1127 Ttg2A ABC-type transpo 97.5 4.7E-06 1E-10 75.3 -3.9 51 3-53 8-58 (263)
192 COG4618 ArpD ABC-type protease 97.5 7.1E-06 1.5E-10 81.6 -3.0 70 16-97 349-418 (580)
193 PRK09536 btuD corrinoid ABC tr 97.5 9E-07 2E-11 89.0 -9.8 50 1-50 1-50 (402)
194 COG1131 CcmA ABC-type multidru 97.5 2.4E-06 5.2E-11 82.6 -6.8 48 4-51 5-53 (293)
195 PF05970 PIF1: PIF1-like helic 97.5 0.00016 3.6E-09 72.3 6.1 102 16-128 3-112 (364)
196 TIGR01447 recD exodeoxyribonuc 97.5 0.00025 5.4E-09 75.0 7.7 65 17-81 148-215 (586)
197 PRK13889 conjugal transfer rel 97.5 0.017 3.6E-07 64.6 21.7 64 11-76 343-407 (988)
198 PRK05703 flhF flagellar biosyn 97.5 0.00082 1.8E-08 68.4 10.8 88 28-128 220-309 (424)
199 PRK10875 recD exonuclease V su 97.5 0.00079 1.7E-08 71.4 10.9 65 16-80 154-220 (615)
200 COG1118 CysA ABC-type sulfate/ 97.5 1E-05 2.2E-10 75.7 -2.8 47 4-50 3-49 (345)
201 COG0410 LivF ABC-type branched 97.5 1.6E-06 3.4E-11 78.0 -7.9 140 1-159 1-141 (237)
202 cd03230 ABC_DR_subfamily_A Thi 97.4 2.3E-06 5E-11 76.3 -7.1 115 17-144 14-141 (173)
203 cd03228 ABCC_MRP_Like The MRP 97.4 1.3E-06 2.8E-11 77.7 -8.8 35 18-52 17-51 (171)
204 cd03246 ABCC_Protease_Secretio 97.4 1.3E-05 2.9E-10 71.4 -2.3 115 18-144 17-142 (173)
205 PRK06526 transposase; Provisio 97.4 0.00016 3.5E-09 68.2 4.8 28 25-52 94-121 (254)
206 TIGR01448 recD_rel helicase, p 97.4 0.00085 1.8E-08 73.1 10.7 66 11-76 320-385 (720)
207 PRK13536 nodulation factor exp 97.4 1.9E-06 4E-11 85.2 -9.1 49 3-51 41-89 (340)
208 PRK13537 nodulation ABC transp 97.4 2.8E-06 6.1E-11 82.9 -7.8 49 3-51 7-55 (306)
209 PRK11650 ugpC glycerol-3-phosp 97.3 2.7E-06 5.8E-11 84.6 -9.0 51 1-51 1-52 (356)
210 cd03247 ABCC_cytochrome_bd The 97.3 1.8E-05 3.9E-10 70.9 -2.9 35 18-52 17-51 (178)
211 PRK12726 flagellar biosynthesi 97.3 0.00067 1.4E-08 66.7 7.6 91 27-128 204-295 (407)
212 TIGR02760 TraI_TIGR conjugativ 97.3 0.02 4.3E-07 69.0 21.0 238 12-303 427-677 (1960)
213 PRK13826 Dtr system oriT relax 97.3 0.042 9E-07 61.9 22.0 111 12-144 379-492 (1102)
214 cd03229 ABC_Class3 This class 97.3 2.2E-06 4.7E-11 76.8 -9.5 119 18-147 15-149 (178)
215 PRK14721 flhF flagellar biosyn 97.3 0.0018 3.9E-08 65.3 10.3 88 27-127 189-278 (420)
216 TIGR00960 3a0501s02 Type II (G 97.3 5.3E-06 1.1E-10 76.9 -7.4 45 7-51 5-51 (216)
217 PF09848 DUF2075: Uncharacteri 97.2 0.00046 1E-08 68.9 5.8 92 30-130 2-95 (352)
218 PRK10416 signal recognition pa 97.2 0.002 4.3E-08 63.0 9.9 92 28-128 113-206 (318)
219 PRK08181 transposase; Validate 97.2 0.002 4.3E-08 61.3 9.6 40 25-66 102-141 (269)
220 PF00176 SNF2_N: SNF2 family N 97.2 0.00038 8.2E-09 67.8 4.8 55 28-83 24-81 (299)
221 COG0610 Type I site-specific r 97.2 0.014 3E-07 65.6 17.5 50 309-377 589-638 (962)
222 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0006 1.3E-08 58.6 5.4 98 19-143 16-115 (144)
223 cd00267 ABC_ATPase ABC (ATP-bi 97.2 4.2E-05 9E-10 67.0 -2.0 109 19-143 15-125 (157)
224 smart00382 AAA ATPases associa 97.2 0.00029 6.2E-09 59.8 3.3 39 29-69 2-40 (148)
225 PRK12727 flagellar biosynthesi 97.2 0.0019 4.1E-08 66.3 9.6 91 26-129 347-439 (559)
226 TIGR03015 pepcterm_ATPase puta 97.2 0.0014 3E-08 62.9 8.3 27 26-52 39-66 (269)
227 PF13307 Helicase_C_2: Helicas 97.2 0.00016 3.5E-09 63.8 1.6 121 253-383 8-145 (167)
228 cd03222 ABC_RNaseL_inhibitor T 97.2 0.001 2.2E-08 59.1 6.7 97 24-145 20-118 (177)
229 PRK10536 hypothetical protein; 97.2 0.00087 1.9E-08 62.4 6.3 57 13-69 58-114 (262)
230 KOG2373 Predicted mitochondria 97.2 0.00039 8.4E-09 66.0 3.9 132 15-148 259-414 (514)
231 cd03268 ABC_BcrA_bacitracin_re 97.1 9.1E-06 2E-10 74.8 -7.0 42 10-51 7-48 (208)
232 PF02562 PhoH: PhoH-like prote 97.1 0.00055 1.2E-08 61.9 4.5 56 14-69 4-59 (205)
233 cd03213 ABCG_EPDR ABCG transpo 97.1 1.5E-05 3.2E-10 72.5 -5.7 37 16-52 22-58 (194)
234 KOG0058 Peptide exporter, ABC 97.1 0.00033 7.2E-09 73.2 3.5 45 6-50 468-515 (716)
235 PRK04296 thymidine kinase; Pro 97.1 0.00039 8.4E-09 62.8 3.5 37 29-67 2-38 (190)
236 cd03223 ABCD_peroxisomal_ALDP 97.1 0.00075 1.6E-08 59.6 5.3 113 18-143 16-136 (166)
237 PRK07952 DNA replication prote 97.1 0.0042 9.2E-08 58.1 10.4 92 30-148 100-191 (244)
238 KOG0391 SNF2 family DNA-depend 97.1 0.0038 8.2E-08 68.0 11.0 115 253-391 1275-1391(1958)
239 COG4167 SapF ABC-type antimicr 97.1 2.4E-05 5.3E-10 67.5 -4.2 50 1-50 2-60 (267)
240 PRK06995 flhF flagellar biosyn 97.1 0.0021 4.6E-08 65.9 8.9 59 27-85 254-314 (484)
241 TIGR02314 ABC_MetN D-methionin 97.1 6.2E-06 1.4E-10 81.4 -9.1 47 5-51 3-53 (343)
242 PRK14723 flhF flagellar biosyn 97.1 0.0028 6.1E-08 68.1 10.2 88 28-128 184-273 (767)
243 cd03238 ABC_UvrA The excision 97.1 0.00083 1.8E-08 59.7 5.3 112 20-144 12-135 (176)
244 COG3840 ThiQ ABC-type thiamine 97.1 0.00074 1.6E-08 58.6 4.5 28 25-52 21-48 (231)
245 COG1135 AbcC ABC-type metal io 97.1 1.7E-05 3.7E-10 74.4 -5.8 46 5-50 3-53 (339)
246 TIGR02868 CydC thiol reductant 97.0 2.3E-05 5E-10 83.0 -6.2 34 18-51 350-383 (529)
247 PRK12724 flagellar biosynthesi 97.0 0.0035 7.5E-08 62.8 9.4 56 29-84 223-279 (432)
248 PRK11153 metN DL-methionine tr 97.0 9.5E-06 2.1E-10 80.5 -8.9 46 5-50 3-52 (343)
249 cd01120 RecA-like_NTPases RecA 97.0 0.0051 1.1E-07 53.6 9.5 34 32-67 2-35 (165)
250 PF13173 AAA_14: AAA domain 97.0 0.0025 5.4E-08 53.5 7.0 27 28-54 1-27 (128)
251 PRK06731 flhF flagellar biosyn 97.0 0.0063 1.4E-07 57.8 10.4 24 29-52 75-98 (270)
252 PRK09452 potA putrescine/sperm 97.0 9.2E-06 2E-10 81.2 -9.3 48 3-50 14-61 (375)
253 COG4608 AppF ABC-type oligopep 97.0 4.1E-05 9E-10 71.0 -4.4 141 3-147 4-158 (268)
254 cd03215 ABC_Carb_Monos_II This 96.9 0.00043 9.3E-09 62.2 2.1 35 18-52 15-49 (182)
255 COG0411 LivG ABC-type branched 96.9 5.5E-05 1.2E-09 68.8 -3.8 45 2-46 3-47 (250)
256 TIGR01188 drrA daunorubicin re 96.9 2.5E-05 5.4E-10 76.3 -6.6 33 18-50 8-40 (302)
257 TIGR00376 DNA helicase, putati 96.9 0.0021 4.6E-08 68.9 7.5 66 14-81 157-223 (637)
258 cd03214 ABC_Iron-Siderophores_ 96.9 0.00014 2.9E-09 65.3 -1.6 128 11-146 7-145 (180)
259 TIGR03499 FlhF flagellar biosy 96.9 0.0024 5.2E-08 61.5 6.6 87 28-127 193-281 (282)
260 PRK06893 DNA replication initi 96.9 0.0039 8.5E-08 58.2 7.9 24 29-52 39-62 (229)
261 TIGR02788 VirB11 P-type DNA tr 96.8 0.0018 3.9E-08 63.3 5.8 28 23-50 138-165 (308)
262 PRK09183 transposase/IS protei 96.8 0.0044 9.6E-08 58.9 8.1 39 26-66 99-137 (259)
263 PF13555 AAA_29: P-loop contai 96.8 0.0011 2.4E-08 47.1 3.0 23 28-50 22-44 (62)
264 PF00580 UvrD-helicase: UvrD/R 96.8 0.0022 4.8E-08 62.9 6.2 67 16-84 2-70 (315)
265 COG1117 PstB ABC-type phosphat 96.8 0.001 2.2E-08 59.4 3.2 134 4-146 8-144 (253)
266 cd03233 ABC_PDR_domain1 The pl 96.8 0.00038 8.3E-09 63.7 0.6 45 7-51 7-55 (202)
267 PRK11607 potG putrescine trans 96.8 2.1E-05 4.6E-10 78.8 -8.6 47 4-50 20-66 (377)
268 KOG0392 SNF2 family DNA-depend 96.8 0.0065 1.4E-07 66.7 9.4 112 254-389 1340-1456(1549)
269 KOG1803 DNA helicase [Replicat 96.7 0.0029 6.2E-08 64.7 6.3 64 15-80 186-250 (649)
270 TIGR02782 TrbB_P P-type conjug 96.7 0.0038 8.2E-08 60.6 6.9 52 20-71 123-174 (299)
271 COG4988 CydD ABC-type transpor 96.7 7.8E-05 1.7E-09 76.0 -4.9 44 8-51 325-369 (559)
272 PRK08727 hypothetical protein; 96.7 0.0059 1.3E-07 57.1 8.0 35 30-66 42-76 (233)
273 TIGR01425 SRP54_euk signal rec 96.7 0.0098 2.1E-07 60.1 9.9 51 30-82 101-153 (429)
274 TIGR01186 proV glycine betaine 96.7 4.4E-05 9.6E-10 75.9 -6.7 32 20-51 10-41 (363)
275 TIGR00064 ftsY signal recognit 96.7 0.015 3.3E-07 55.6 10.8 92 29-129 72-165 (272)
276 COG3845 ABC-type uncharacteriz 96.7 0.0011 2.3E-08 66.5 2.8 48 3-50 4-51 (501)
277 PRK06835 DNA replication prote 96.7 0.012 2.7E-07 57.6 10.3 37 28-66 182-218 (329)
278 COG4619 ABC-type uncharacteriz 96.7 0.00025 5.3E-09 60.6 -1.4 48 4-51 4-51 (223)
279 PF00004 AAA: ATPase family as 96.7 0.0019 4E-08 54.3 3.9 22 32-53 1-22 (132)
280 KOG0388 SNF2 family DNA-depend 96.7 0.014 3E-07 60.7 10.5 114 253-390 1043-1157(1185)
281 PF05729 NACHT: NACHT domain 96.6 0.0061 1.3E-07 53.4 7.2 24 30-53 1-24 (166)
282 PF01695 IstB_IS21: IstB-like 96.6 0.0025 5.4E-08 56.8 4.6 39 26-66 44-82 (178)
283 COG4586 ABC-type uncharacteriz 96.6 0.0047 1E-07 57.3 6.3 53 17-69 38-90 (325)
284 PRK13833 conjugal transfer pro 96.6 0.0038 8.1E-08 60.9 6.1 49 22-70 137-185 (323)
285 COG1137 YhbG ABC-type (unclass 96.6 0.00018 3.8E-09 63.3 -2.7 60 1-72 2-61 (243)
286 COG2256 MGS1 ATPase related to 96.6 0.0066 1.4E-07 59.4 7.6 27 25-51 42-70 (436)
287 COG2274 SunT ABC-type bacterio 96.6 6.7E-05 1.4E-09 80.6 -6.6 45 6-50 474-520 (709)
288 PRK14247 phosphate ABC transpo 96.6 0.00025 5.5E-09 67.2 -2.2 51 1-51 1-51 (250)
289 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.016 3.4E-07 53.9 9.9 25 28-52 37-61 (226)
290 COG0396 sufC Cysteine desulfur 96.6 0.00056 1.2E-08 61.7 0.0 55 1-55 1-56 (251)
291 KOG0057 Mitochondrial Fe/S clu 96.5 0.00032 6.9E-09 70.9 -1.9 41 11-51 359-400 (591)
292 PRK11264 putative amino-acid A 96.5 0.00031 6.7E-09 66.6 -2.0 50 1-50 1-50 (250)
293 PRK05642 DNA replication initi 96.5 0.012 2.5E-07 55.1 8.5 35 30-66 46-80 (234)
294 PRK08084 DNA replication initi 96.5 0.0086 1.9E-07 56.1 7.6 36 29-66 45-80 (235)
295 COG1129 MglA ABC-type sugar tr 96.5 0.0019 4.1E-08 65.8 3.2 49 2-50 7-55 (500)
296 TIGR02857 CydD thiol reductant 96.5 0.00012 2.5E-09 77.7 -5.9 44 8-51 325-370 (529)
297 PRK10895 lipopolysaccharide AB 96.4 0.00028 6E-09 66.5 -2.9 52 1-52 1-52 (241)
298 PRK14262 phosphate ABC transpo 96.4 0.00033 7.2E-09 66.4 -2.5 50 1-50 1-50 (250)
299 TIGR03796 NHPM_micro_ABC1 NHPM 96.4 6.4E-05 1.4E-09 82.6 -8.4 44 8-51 482-527 (710)
300 PRK11747 dinG ATP-dependent DN 96.4 0.0089 1.9E-07 65.1 8.0 64 11-77 22-96 (697)
301 PRK00771 signal recognition pa 96.4 0.021 4.6E-07 58.1 10.1 54 30-84 96-150 (437)
302 PRK13894 conjugal transfer ATP 96.4 0.0058 1.2E-07 59.7 5.8 51 19-69 137-188 (319)
303 COG1484 DnaC DNA replication p 96.4 0.038 8.2E-07 52.3 11.0 98 22-146 98-198 (254)
304 PRK08903 DnaA regulatory inact 96.4 0.012 2.7E-07 54.8 7.6 25 28-52 41-65 (227)
305 cd01130 VirB11-like_ATPase Typ 96.3 0.0055 1.2E-07 55.2 5.0 31 20-50 16-46 (186)
306 COG1132 MdlB ABC-type multidru 96.3 0.0018 3.8E-08 69.3 1.8 47 6-52 331-378 (567)
307 PRK13657 cyclic beta-1,2-gluca 96.3 0.00013 2.8E-09 78.3 -7.0 36 17-52 349-384 (588)
308 PRK11176 lipid transporter ATP 96.3 9.4E-05 2E-09 79.4 -8.1 36 17-52 357-392 (582)
309 PRK10867 signal recognition pa 96.3 0.029 6.3E-07 57.0 10.2 92 30-128 101-193 (433)
310 PRK08116 hypothetical protein; 96.3 0.042 9E-07 52.5 10.7 35 30-66 115-149 (268)
311 KOG0389 SNF2 family DNA-depend 96.3 0.033 7.1E-07 58.8 10.5 113 254-390 777-891 (941)
312 TIGR00604 rad3 DNA repair heli 96.2 0.01 2.2E-07 65.1 7.2 70 12-81 7-82 (705)
313 PRK14253 phosphate ABC transpo 96.2 0.0006 1.3E-08 64.6 -2.0 51 1-51 1-51 (249)
314 PF07517 SecA_DEAD: SecA DEAD- 96.2 0.033 7.2E-07 52.6 9.6 84 8-96 71-154 (266)
315 PRK00149 dnaA chromosomal repl 96.2 0.026 5.6E-07 58.5 9.6 38 30-67 149-186 (450)
316 PRK11614 livF leucine/isoleuci 96.2 0.00045 9.7E-09 65.0 -3.2 49 2-50 4-52 (237)
317 PRK14240 phosphate transporter 96.2 0.00057 1.2E-08 64.8 -2.5 50 1-50 1-50 (250)
318 KOG1802 RNA helicase nonsense 96.2 0.0092 2E-07 61.6 5.9 66 15-81 411-476 (935)
319 PRK14267 phosphate ABC transpo 96.2 0.00057 1.2E-08 64.9 -2.5 50 2-51 3-52 (253)
320 PF05621 TniB: Bacterial TniB 96.2 0.026 5.7E-07 53.8 8.6 106 30-145 62-176 (302)
321 PRK13638 cbiO cobalt transport 96.1 0.00031 6.7E-09 67.5 -4.5 46 5-50 3-48 (271)
322 PRK14956 DNA polymerase III su 96.1 0.011 2.4E-07 60.4 6.4 32 21-52 29-63 (484)
323 TIGR03797 NHPM_micro_ABC2 NHPM 96.1 7.2E-05 1.6E-09 81.8 -10.0 45 8-52 456-502 (686)
324 TIGR02315 ABC_phnC phosphonate 96.1 0.00089 1.9E-08 63.2 -1.3 45 6-50 4-49 (243)
325 PRK10419 nikE nickel transport 96.1 0.0006 1.3E-08 65.3 -2.6 50 1-50 1-59 (268)
326 PRK07003 DNA polymerase III su 96.1 0.019 4.2E-07 61.4 8.2 36 17-52 23-61 (830)
327 COG4148 ModC ABC-type molybdat 96.1 0.0018 3.9E-08 60.2 0.5 27 24-50 19-45 (352)
328 cd03258 ABC_MetN_methionine_tr 96.1 0.00073 1.6E-08 63.3 -2.1 47 5-51 3-53 (233)
329 TIGR01193 bacteriocin_ABC ABC- 96.1 0.00012 2.7E-09 80.2 -8.4 35 17-51 488-522 (708)
330 PRK10247 putative ABC transpor 96.1 0.00072 1.6E-08 63.0 -2.2 48 4-51 8-55 (225)
331 cd03259 ABC_Carb_Solutes_like 96.1 0.00084 1.8E-08 62.0 -1.7 44 7-50 4-47 (213)
332 TIGR00362 DnaA chromosomal rep 96.1 0.027 5.8E-07 57.5 8.9 36 30-66 137-173 (405)
333 PF06862 DUF1253: Protein of u 96.1 0.16 3.4E-06 51.5 14.1 176 192-391 216-419 (442)
334 PF05496 RuvB_N: Holliday junc 96.0 0.008 1.7E-07 54.7 4.4 23 30-52 51-73 (233)
335 PRK13851 type IV secretion sys 96.0 0.0077 1.7E-07 59.4 4.7 45 22-69 155-199 (344)
336 PRK06921 hypothetical protein; 96.0 0.04 8.7E-07 52.5 9.4 38 28-66 116-153 (266)
337 cd03115 SRP The signal recogni 96.0 0.055 1.2E-06 48.0 9.8 22 31-52 2-23 (173)
338 cd03235 ABC_Metallic_Cations A 96.0 0.0011 2.3E-08 61.2 -1.3 43 8-50 4-46 (213)
339 COG4559 ABC-type hemin transpo 96.0 0.0021 4.5E-08 57.4 0.4 48 5-52 3-50 (259)
340 cd03226 ABC_cobalt_CbiO_domain 96.0 0.0011 2.4E-08 60.8 -1.4 44 8-51 4-48 (205)
341 COG3910 Predicted ATPase [Gene 96.0 0.036 7.9E-07 48.6 7.9 41 12-55 22-63 (233)
342 PRK14242 phosphate transporter 96.0 0.00075 1.6E-08 64.1 -2.6 48 3-50 6-53 (253)
343 PRK12377 putative replication 96.0 0.058 1.3E-06 50.7 10.0 23 29-51 101-123 (248)
344 COG4181 Predicted ABC-type tra 96.0 0.017 3.8E-07 49.8 5.8 102 4-113 7-112 (228)
345 COG4615 PvdE ABC-type sideroph 96.0 0.0053 1.2E-07 59.8 3.0 63 114-176 462-526 (546)
346 COG0553 HepA Superfamily II DN 96.0 0.016 3.5E-07 65.4 7.5 107 256-389 713-824 (866)
347 PRK10522 multidrug transporter 95.9 0.0053 1.1E-07 65.3 3.3 33 18-50 338-370 (547)
348 PRK08533 flagellar accessory p 95.9 0.018 3.9E-07 53.7 6.5 28 26-53 21-48 (230)
349 TIGR01842 type_I_sec_PrtD type 95.9 0.0043 9.3E-08 66.0 2.6 36 17-52 332-367 (544)
350 PRK14962 DNA polymerase III su 95.9 0.024 5.3E-07 58.5 7.9 33 20-52 24-59 (472)
351 PRK13543 cytochrome c biogenes 95.9 0.00096 2.1E-08 61.6 -2.2 48 4-51 12-59 (214)
352 PRK14087 dnaA chromosomal repl 95.9 0.043 9.4E-07 56.5 9.7 37 30-67 142-179 (450)
353 TIGR01192 chvA glucan exporter 95.9 0.00018 4E-09 76.9 -8.0 43 9-51 340-383 (585)
354 PRK11174 cysteine/glutathione 95.9 0.018 3.8E-07 62.0 7.2 36 18-53 365-400 (588)
355 PRK10790 putative multidrug tr 95.9 0.0012 2.6E-08 71.0 -1.9 35 18-52 356-390 (592)
356 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.00082 1.8E-08 62.3 -2.8 34 17-50 18-51 (218)
357 PRK11124 artP arginine transpo 95.9 0.00079 1.7E-08 63.5 -2.9 47 5-51 4-50 (242)
358 cd03225 ABC_cobalt_CbiO_domain 95.9 0.0012 2.6E-08 60.8 -1.7 43 9-51 5-49 (211)
359 PRK13540 cytochrome c biogenes 95.9 0.00062 1.4E-08 62.1 -3.6 46 6-51 4-49 (200)
360 PRK14250 phosphate ABC transpo 95.9 0.00083 1.8E-08 63.3 -2.8 48 4-51 4-51 (241)
361 cd03301 ABC_MalK_N The N-termi 95.9 0.0009 2E-08 61.7 -2.6 44 8-51 5-48 (213)
362 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.9 0.0016 3.4E-08 60.6 -0.9 47 5-51 24-70 (224)
363 PRK13538 cytochrome c biogenes 95.8 0.00062 1.3E-08 62.4 -3.7 45 7-51 5-49 (204)
364 PF00437 T2SE: Type II/IV secr 95.8 0.013 2.9E-07 56.1 5.3 40 25-66 123-162 (270)
365 TIGR02673 FtsE cell division A 95.8 0.0011 2.4E-08 61.2 -2.1 45 6-50 4-49 (214)
366 PRK07994 DNA polymerase III su 95.8 0.017 3.7E-07 61.5 6.5 36 16-51 22-60 (647)
367 PRK11022 dppD dipeptide transp 95.8 0.00071 1.5E-08 66.7 -3.6 51 1-51 1-55 (326)
368 COG4133 CcmA ABC-type transpor 95.8 0.0013 2.7E-08 57.6 -1.6 34 17-50 16-49 (209)
369 PRK13539 cytochrome c biogenes 95.8 0.00063 1.4E-08 62.5 -3.8 49 4-52 3-51 (207)
370 cd03265 ABC_DrrA DrrA is the A 95.8 0.00092 2E-08 62.0 -2.7 43 9-51 6-48 (220)
371 KOG0055 Multidrug/pheromone ex 95.8 0.0014 3.1E-08 72.8 -1.6 46 5-50 989-1037(1228)
372 PF00308 Bac_DnaA: Bacterial d 95.8 0.038 8.2E-07 51.1 8.0 36 31-66 36-71 (219)
373 TIGR00958 3a01208 Conjugate Tr 95.8 0.0023 5E-08 70.2 -0.1 45 7-51 482-529 (711)
374 cd01131 PilT Pilus retraction 95.8 0.012 2.7E-07 53.4 4.7 21 31-51 3-23 (198)
375 TIGR02323 CP_lyasePhnK phospho 95.8 0.0011 2.5E-08 62.9 -2.2 49 4-52 4-52 (253)
376 PRK10938 putative molybdenum t 95.8 0.0014 3E-08 68.8 -1.8 51 1-51 1-51 (490)
377 cd03257 ABC_NikE_OppD_transpor 95.8 0.0012 2.6E-08 61.6 -2.0 35 17-51 19-53 (228)
378 PRK14957 DNA polymerase III su 95.8 0.022 4.7E-07 59.7 6.9 34 18-51 24-60 (546)
379 cd03224 ABC_TM1139_LivF_branch 95.8 0.00096 2.1E-08 62.0 -2.8 43 8-50 5-47 (222)
380 cd03219 ABC_Mj1267_LivG_branch 95.8 0.0012 2.6E-08 62.0 -2.2 44 7-50 4-47 (236)
381 cd03266 ABC_NatA_sodium_export 95.8 0.001 2.2E-08 61.7 -2.7 45 7-51 5-53 (218)
382 TIGR00959 ffh signal recogniti 95.8 0.066 1.4E-06 54.4 10.1 54 31-84 101-155 (428)
383 PRK10744 pstB phosphate transp 95.8 0.001 2.2E-08 63.4 -2.7 47 4-50 14-60 (260)
384 PRK14261 phosphate ABC transpo 95.8 0.001 2.2E-08 63.2 -2.7 48 3-50 6-53 (253)
385 TIGR01978 sufC FeS assembly AT 95.8 0.0012 2.6E-08 62.3 -2.3 44 8-51 5-48 (243)
386 cd03263 ABC_subfamily_A The AB 95.8 0.0012 2.6E-08 61.2 -2.2 44 8-51 5-50 (220)
387 TIGR03375 type_I_sec_LssB type 95.8 0.033 7.1E-07 61.2 8.6 35 17-51 479-513 (694)
388 cd03218 ABC_YhbG The ABC trans 95.7 0.0013 2.7E-08 61.7 -2.2 44 8-51 5-48 (232)
389 PRK14268 phosphate ABC transpo 95.7 0.00096 2.1E-08 63.6 -3.0 49 3-51 12-60 (258)
390 PRK11231 fecE iron-dicitrate t 95.7 0.00085 1.8E-08 63.8 -3.4 48 4-51 3-50 (255)
391 cd03260 ABC_PstB_phosphate_tra 95.7 0.001 2.3E-08 62.0 -2.7 45 8-52 5-49 (227)
392 PRK11248 tauB taurine transpor 95.7 0.00083 1.8E-08 63.8 -3.5 45 7-51 5-49 (255)
393 PRK13900 type IV secretion sys 95.7 0.012 2.6E-07 57.9 4.5 43 24-69 155-197 (332)
394 COG1199 DinG Rad3-related DNA 95.7 0.025 5.4E-07 61.7 7.5 69 7-78 8-82 (654)
395 PRK14273 phosphate ABC transpo 95.7 0.0015 3.4E-08 62.0 -1.7 48 3-50 7-54 (254)
396 PRK11000 maltose/maltodextrin 95.7 0.00081 1.8E-08 67.4 -3.9 51 1-51 1-51 (369)
397 PRK14274 phosphate ABC transpo 95.7 0.00089 1.9E-08 63.8 -3.5 49 3-51 12-60 (259)
398 COG2804 PulE Type II secretory 95.7 0.018 4E-07 58.4 5.7 41 13-53 240-282 (500)
399 PRK14239 phosphate transporter 95.7 0.0011 2.5E-08 62.8 -2.7 48 3-50 5-52 (252)
400 TIGR03864 PQQ_ABC_ATP ABC tran 95.7 0.0009 1.9E-08 62.9 -3.4 44 7-50 5-48 (236)
401 PRK14269 phosphate ABC transpo 95.7 0.0012 2.6E-08 62.5 -2.7 48 4-51 3-50 (246)
402 PRK13548 hmuV hemin importer A 95.7 0.0011 2.3E-08 63.3 -3.0 47 5-51 4-50 (258)
403 PRK14248 phosphate ABC transpo 95.7 0.0011 2.3E-08 63.6 -3.0 48 4-51 22-69 (268)
404 cd03261 ABC_Org_Solvent_Resist 95.7 0.00093 2E-08 62.7 -3.4 43 9-51 6-48 (235)
405 PF05127 Helicase_RecD: Helica 95.7 0.012 2.5E-07 51.9 3.8 46 33-79 1-46 (177)
406 cd03262 ABC_HisP_GlnQ_permease 95.7 0.0012 2.6E-08 61.0 -2.7 43 9-51 6-48 (213)
407 PRK13652 cbiO cobalt transport 95.7 0.00094 2E-08 64.3 -3.5 51 1-51 1-52 (277)
408 PRK09544 znuC high-affinity zi 95.7 0.00089 1.9E-08 63.4 -3.6 48 3-50 4-51 (251)
409 PRK09984 phosphonate/organopho 95.7 0.0012 2.5E-08 63.2 -2.9 49 3-51 4-52 (262)
410 TIGR03411 urea_trans_UrtD urea 95.6 0.0011 2.3E-08 62.6 -3.0 48 4-51 3-50 (242)
411 TIGR03410 urea_trans_UrtE urea 95.6 0.0012 2.7E-08 61.6 -2.6 43 8-50 5-47 (230)
412 PRK09580 sufC cysteine desulfu 95.6 0.0014 2.9E-08 62.1 -2.4 47 5-51 3-49 (248)
413 PRK11247 ssuB aliphatic sulfon 95.6 0.0011 2.3E-08 63.1 -3.1 46 6-51 15-60 (257)
414 TIGR02524 dot_icm_DotB Dot/Icm 95.6 0.018 4E-07 57.2 5.5 23 28-50 133-155 (358)
415 PRK09493 glnQ glutamine ABC tr 95.6 0.0011 2.3E-08 62.5 -3.1 46 6-51 4-49 (240)
416 COG0552 FtsY Signal recognitio 95.6 0.11 2.3E-06 50.1 10.3 106 31-146 141-248 (340)
417 cd03296 ABC_CysA_sulfate_impor 95.6 0.00097 2.1E-08 62.8 -3.5 47 5-51 4-50 (239)
418 PRK13547 hmuV hemin importer A 95.6 0.0012 2.5E-08 63.4 -2.9 47 5-51 3-49 (272)
419 TIGR00972 3a0107s01c2 phosphat 95.6 0.0012 2.7E-08 62.4 -2.8 44 7-50 5-48 (247)
420 KOG2228 Origin recognition com 95.6 0.21 4.5E-06 48.1 11.9 107 16-131 30-150 (408)
421 PRK08939 primosomal protein Dn 95.6 0.089 1.9E-06 51.2 10.0 26 28-53 155-180 (306)
422 TIGR00596 rad1 DNA repair prot 95.6 0.022 4.8E-07 62.4 6.4 46 231-276 268-317 (814)
423 PRK14088 dnaA chromosomal repl 95.6 0.038 8.2E-07 56.8 7.8 38 30-67 131-168 (440)
424 cd03293 ABC_NrtD_SsuB_transpor 95.6 0.0011 2.3E-08 61.6 -3.2 34 17-50 18-51 (220)
425 PRK14241 phosphate transporter 95.6 0.0012 2.5E-08 63.0 -3.0 48 4-51 5-52 (258)
426 COG4778 PhnL ABC-type phosphon 95.6 0.0019 4E-08 55.5 -1.4 36 18-53 26-61 (235)
427 PRK15093 antimicrobial peptide 95.6 0.0011 2.4E-08 65.5 -3.3 51 1-51 1-55 (330)
428 PRK14260 phosphate ABC transpo 95.6 0.001 2.2E-08 63.4 -3.4 49 3-51 7-55 (259)
429 PRK11831 putative ABC transpor 95.6 0.00079 1.7E-08 64.6 -4.2 49 3-51 7-55 (269)
430 TIGR03608 L_ocin_972_ABC putat 95.6 0.0015 3.2E-08 60.0 -2.3 40 12-51 7-46 (206)
431 KOG0054 Multidrug resistance-a 95.6 0.0034 7.5E-08 71.4 0.1 34 17-50 1154-1187(1381)
432 TIGR03265 PhnT2 putative 2-ami 95.6 0.00081 1.8E-08 66.9 -4.4 51 1-51 2-52 (353)
433 PRK14251 phosphate ABC transpo 95.6 0.0012 2.6E-08 62.6 -3.0 49 3-51 4-52 (251)
434 PRK11432 fbpC ferric transport 95.6 0.001 2.2E-08 66.2 -3.7 49 2-50 5-53 (351)
435 PRK11701 phnK phosphonate C-P 95.6 0.0014 3.1E-08 62.4 -2.6 49 3-51 6-54 (258)
436 KOG2340 Uncharacterized conser 95.5 0.23 4.9E-06 50.4 12.5 118 249-390 547-671 (698)
437 PRK10908 cell division protein 95.5 0.0013 2.8E-08 61.2 -2.9 45 6-50 4-49 (222)
438 PRK11147 ABC transporter ATPas 95.5 0.0015 3.2E-08 70.7 -2.9 51 1-51 1-51 (635)
439 cd00820 PEPCK_HprK Phosphoenol 95.5 0.0085 1.8E-07 48.0 2.2 27 24-50 10-36 (107)
440 cd03269 ABC_putative_ATPase Th 95.5 0.00091 2E-08 61.6 -3.9 34 18-51 15-48 (210)
441 PRK14255 phosphate ABC transpo 95.5 0.0013 2.8E-08 62.4 -3.0 47 4-50 6-52 (252)
442 PF00005 ABC_tran: ABC transpo 95.5 0.0076 1.6E-07 51.1 2.0 25 26-50 8-32 (137)
443 PRK14243 phosphate transporter 95.5 0.0015 3.3E-08 62.4 -2.6 47 4-50 11-57 (264)
444 TIGR01288 nodI ATP-binding ABC 95.5 0.0013 2.8E-08 64.2 -3.1 48 4-51 5-52 (303)
445 PRK14259 phosphate ABC transpo 95.5 0.0012 2.5E-08 63.4 -3.5 48 4-51 14-61 (269)
446 cd03256 ABC_PhnC_transporter A 95.5 0.0017 3.8E-08 61.1 -2.3 43 9-51 6-49 (241)
447 cd03231 ABC_CcmA_heme_exporter 95.5 0.0017 3.6E-08 59.3 -2.4 44 8-51 5-48 (201)
448 PRK11629 lolD lipoprotein tran 95.5 0.0012 2.6E-08 61.9 -3.5 48 4-51 6-57 (233)
449 PRK10584 putative ABC transpor 95.5 0.0014 3.1E-08 61.1 -3.0 48 4-51 7-58 (228)
450 TIGR01189 ccmA heme ABC export 95.5 0.0012 2.6E-08 60.1 -3.3 42 10-51 7-48 (198)
451 TIGR01420 pilT_fam pilus retra 95.5 0.019 4.2E-07 57.0 4.9 24 27-50 120-143 (343)
452 PRK00411 cdc6 cell division co 95.4 0.068 1.5E-06 54.3 9.1 23 30-52 56-78 (394)
453 COG4987 CydC ABC-type transpor 95.4 0.0068 1.5E-07 61.5 1.7 48 4-51 337-386 (573)
454 PRK14265 phosphate ABC transpo 95.4 0.0015 3.2E-08 62.8 -2.9 47 4-50 21-67 (274)
455 PRK06645 DNA polymerase III su 95.4 0.054 1.2E-06 56.3 8.3 29 24-52 35-66 (507)
456 TIGR02525 plasmid_TraJ plasmid 95.4 0.021 4.4E-07 57.0 5.0 24 27-50 147-170 (372)
457 COG2805 PilT Tfp pilus assembl 95.4 0.019 4.1E-07 54.2 4.4 23 28-50 124-146 (353)
458 PRK14270 phosphate ABC transpo 95.4 0.0015 3.2E-08 62.0 -3.1 49 3-51 4-52 (251)
459 PRK14949 DNA polymerase III su 95.4 0.039 8.4E-07 60.3 7.2 34 19-52 25-61 (944)
460 PRK09087 hypothetical protein; 95.4 0.032 6.9E-07 51.8 5.8 22 29-50 44-65 (226)
461 TIGR00954 3a01203 Peroxysomal 95.4 0.0061 1.3E-07 66.2 1.2 45 7-51 455-500 (659)
462 cd01129 PulE-GspE PulE/GspE Th 95.4 0.038 8.3E-07 52.6 6.5 36 16-51 65-102 (264)
463 PRK15112 antimicrobial peptide 95.4 0.0023 5.1E-08 61.2 -1.9 49 3-51 4-61 (267)
464 TIGR02203 MsbA_lipidA lipid A 95.4 0.0099 2.2E-07 63.7 2.7 34 18-51 347-380 (571)
465 PRK14958 DNA polymerase III su 95.4 0.043 9.4E-07 57.3 7.3 36 16-51 22-60 (509)
466 PRK14238 phosphate transporter 95.3 0.0016 3.5E-08 62.5 -3.1 48 4-51 25-72 (271)
467 cd03294 ABC_Pro_Gly_Bertaine T 95.3 0.0045 9.7E-08 59.4 0.0 43 9-51 30-72 (269)
468 PRK14237 phosphate transporter 95.3 0.0014 3.1E-08 62.7 -3.4 48 4-51 21-68 (267)
469 TIGR02324 CP_lyasePhnL phospho 95.3 0.0018 3.9E-08 60.3 -2.7 34 18-51 23-56 (224)
470 COG4962 CpaF Flp pilus assembl 95.3 0.026 5.7E-07 54.4 5.1 45 24-71 168-212 (355)
471 TIGR02858 spore_III_AA stage I 95.3 0.044 9.6E-07 52.2 6.7 24 30-53 112-135 (270)
472 PRK14246 phosphate ABC transpo 95.3 0.0023 5.1E-08 60.9 -2.0 48 3-50 10-57 (257)
473 PRK10436 hypothetical protein; 95.3 0.037 8E-07 56.9 6.5 36 15-50 202-239 (462)
474 PRK14245 phosphate ABC transpo 95.3 0.0013 2.8E-08 62.4 -3.9 46 5-50 5-50 (250)
475 PRK10253 iron-enterobactin tra 95.3 0.0015 3.3E-08 62.5 -3.4 46 5-50 9-54 (265)
476 PRK14086 dnaA chromosomal repl 95.3 0.041 8.9E-07 58.0 6.9 36 31-66 316-351 (617)
477 TIGR02211 LolD_lipo_ex lipopro 95.3 0.0017 3.6E-08 60.4 -3.1 34 18-51 20-53 (221)
478 PRK11300 livG leucine/isoleuci 95.3 0.0015 3.3E-08 62.1 -3.4 48 4-51 6-53 (255)
479 PRK14271 phosphate ABC transpo 95.3 0.0016 3.6E-08 62.6 -3.2 48 4-51 22-69 (276)
480 PRK11819 putative ABC transpor 95.3 0.0021 4.5E-08 68.5 -2.8 50 3-52 6-56 (556)
481 PRK10762 D-ribose transporter 95.3 0.0011 2.3E-08 69.8 -4.9 48 3-50 4-51 (501)
482 PRK14272 phosphate ABC transpo 95.3 0.002 4.3E-08 61.2 -2.7 48 4-51 5-52 (252)
483 PRK08691 DNA polymerase III su 95.2 0.058 1.2E-06 57.6 7.8 36 17-52 23-61 (709)
484 PLN03232 ABC transporter C fam 95.2 0.0037 8.1E-08 74.0 -1.0 45 7-51 1238-1284(1495)
485 cd03227 ABC_Class2 ABC-type Cl 95.2 0.032 7E-07 48.9 5.2 25 28-52 20-44 (162)
486 PRK10418 nikD nickel transport 95.2 0.0024 5.1E-08 60.7 -2.3 47 4-51 5-51 (254)
487 CHL00131 ycf16 sulfate ABC tra 95.2 0.002 4.3E-08 61.2 -2.8 47 4-50 8-54 (252)
488 PRK12323 DNA polymerase III su 95.2 0.056 1.2E-06 57.1 7.5 37 16-52 22-61 (700)
489 PRK10575 iron-hydroxamate tran 95.2 0.0017 3.7E-08 62.1 -3.3 47 4-50 12-58 (265)
490 TIGR01257 rim_protein retinal- 95.2 0.00038 8.2E-09 82.7 -9.2 35 18-52 1954-1988(2272)
491 PRK09700 D-allose transporter 95.2 0.0013 2.8E-08 69.4 -4.6 48 3-50 5-52 (510)
492 PRK13549 xylose transporter AT 95.2 0.0022 4.8E-08 67.5 -2.8 49 3-51 5-53 (506)
493 PRK14249 phosphate ABC transpo 95.2 0.002 4.2E-08 61.2 -3.0 48 4-51 5-52 (251)
494 cd03232 ABC_PDR_domain2 The pl 95.2 0.0015 3.3E-08 59.1 -3.6 45 6-50 6-54 (192)
495 TIGR03740 galliderm_ABC gallid 95.2 0.0018 3.8E-08 60.3 -3.3 43 9-51 6-48 (223)
496 cd03295 ABC_OpuCA_Osmoprotecti 95.2 0.002 4.2E-08 60.8 -3.0 43 9-51 6-49 (242)
497 TIGR01846 type_I_sec_HlyB type 95.1 0.014 3E-07 64.1 3.1 35 18-52 472-506 (694)
498 PRK14235 phosphate transporter 95.1 0.0013 2.8E-08 63.0 -4.4 47 5-51 21-67 (267)
499 PRK14266 phosphate ABC transpo 95.1 0.0016 3.5E-08 61.8 -3.7 47 4-50 4-50 (250)
500 COG3267 ExeA Type II secretory 95.1 0.16 3.4E-06 47.1 9.2 113 18-145 39-158 (269)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-97 Score=737.53 Aligned_cols=462 Identities=58% Similarity=0.931 Sum_probs=446.1
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
..+.+.+..||++++.++++..+.++++++|+|+|||||||++|+++++.++...|. |.|++|+|.++..++++++.+.
T Consensus 41 ~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922|consen 41 LSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred cCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHHHHHHHh
Confidence 456778899999999999999999999999999999999999999999999988776 9999999999999999999999
Q ss_pred CCccCCeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCC
Q 010422 84 GVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~ 154 (511)
+..+|..|||.+++++.++..|+++ +++.||.|+++++||+||||||++.+|.++++||++...|
T Consensus 120 ~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R------ 193 (674)
T KOG0922|consen 120 GCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR------ 193 (674)
T ss_pred CCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC------
Confidence 9999999999999999998887765 7888999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCC
Q 010422 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE 234 (511)
Q Consensus 155 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (511)
+++|+|+||||+|.+.|++||++++++.++|+.||+++.|...+.
T Consensus 194 -----------------------------------~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~ 238 (674)
T KOG0922|consen 194 -----------------------------------PDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPT 238 (674)
T ss_pred -----------------------------------CCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCc
Confidence 889999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe
Q 010422 235 PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR 314 (511)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~ 314 (511)
.+|+++.+..++++|.+++.|+||||+++.++++.+++.|.+....+..+.+. .+.++||.|+.++|.++|+..+.|.+
T Consensus 239 ~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~R 317 (674)
T KOG0922|consen 239 ADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKR 317 (674)
T ss_pred hhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcc
Confidence 99999999999999999999999999999999999999999988776666555 78899999999999999999999999
Q ss_pred EEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhhccC
Q 010422 315 KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLED 394 (511)
Q Consensus 315 ~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~ 394 (511)
|||+|||++|++++||+|.||||+|+.+.+.|||..|+..+...|+|++++.||+|||||.++|+||+||++++|+.|++
T Consensus 318 KvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~ 397 (674)
T KOG0922|consen 318 KVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPL 397 (674)
T ss_pred eEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHHH
Q 010422 395 STKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKAL 474 (511)
Q Consensus 395 ~~~pei~~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~~ 474 (511)
...|||.+++|...+|++|++|++|+..|+|++||+.+++..|++.|..+|+||++|.+|.|+|+.|+.+|++|.++|++
T Consensus 398 ~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~l 477 (674)
T KOG0922|consen 398 QTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKML 477 (674)
T ss_pred CCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHhhhcCCHHHHHHHHHhhcCCCcccCChhhhhc
Q 010422 475 IVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRR 508 (511)
Q Consensus 475 ~~~~~~~~~~~~l~i~a~l~~~~~~~~~~~~~~~ 508 (511)
+.+..++|.+|+++|+|+|+++++|.+|.++..+
T Consensus 478 l~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~ 511 (674)
T KOG0922|consen 478 LKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAE 511 (674)
T ss_pred hhccccCCcchhhhheeeeeccceecCccchhhh
Confidence 9999999999999999999999999999876544
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-96 Score=718.06 Aligned_cols=461 Identities=55% Similarity=0.919 Sum_probs=447.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
.++.+.++.||++++..+++.++..+++++|.|.|||||||++|+++.+.++.++++.|.|++|+|.++..++.++++++
T Consensus 255 ~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 255 ESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCccCCeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCC
Q 010422 84 GVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~ 154 (511)
+..+|..+||.++++++++..+.++ +++.+|.|..++++||||||||+..+|.++++++++...|
T Consensus 335 gvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R------ 408 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR------ 408 (902)
T ss_pred CcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC------
Confidence 9999999999999999998877665 7778899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCC
Q 010422 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE 234 (511)
Q Consensus 155 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (511)
++++++++|||+|++.|+.||+++|++.++|+.|||+++|...|+
T Consensus 409 -----------------------------------pdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PE 453 (902)
T KOG0923|consen 409 -----------------------------------PDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPE 453 (902)
T ss_pred -----------------------------------CcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCc
Confidence 999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe
Q 010422 235 PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR 314 (511)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~ 314 (511)
.+|+++++..++.+|.+++.|+||||+.+.++++.+...|.+.+..+......+-++++|+++|.+.|.+||++.++|.+
T Consensus 454 AdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaR 533 (902)
T KOG0923|consen 454 ADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGAR 533 (902)
T ss_pred hhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCce
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhh-cc
Q 010422 315 KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LE 393 (511)
Q Consensus 315 ~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~-~~ 393 (511)
||++|||+||++++|++|.+|||+|+++.+.|+|++|+.++...|+|++++.||+|||||.|+|+||+||+...|.+ +.
T Consensus 534 KVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE 613 (902)
T KOG0923|consen 534 KVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELE 613 (902)
T ss_pred eEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 77
Q ss_pred CCCCCcccccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHH
Q 010422 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKA 473 (511)
Q Consensus 394 ~~~~pei~~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~ 473 (511)
....|||.+.+|.+++|.++++|+.++.+|+|++||+.+.+..||+.|+.+||++..|.+|. +|+.|+.+|++|.++||
T Consensus 614 ~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk-~GrrMaEfP~dPmlsKm 692 (902)
T KOG0923|consen 614 EMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELTK-LGRRMAEFPVDPMLSKM 692 (902)
T ss_pred cCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccchhh-hhhhhhhcCCCHHHHhH
Confidence 77889999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHhhhcCCHHHHHHHHHhhcCC-CcccCChhhh
Q 010422 474 LIVAGQFNCLEEMLITVAMLSVE-SIFFRSPGEV 506 (511)
Q Consensus 474 ~~~~~~~~~~~~~l~i~a~l~~~-~~~~~~~~~~ 506 (511)
|+.+-.+.|.+++++|+||||+. ++|.+|.++.
T Consensus 693 i~as~ky~cs~EiitiaamlS~~~svfyrpk~~~ 726 (902)
T KOG0923|consen 693 IVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQ 726 (902)
T ss_pred HhhhccccchHHHHHHHHHHhcCchheecchhhh
Confidence 99999999999999999999998 7999998853
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-90 Score=677.43 Aligned_cols=461 Identities=52% Similarity=0.887 Sum_probs=440.1
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.+.+++..||++..+++++..|.+|++++|+|.|||||||++++++++.++...| .|.|++|+|.++..++++++.+++
T Consensus 347 ~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 347 SIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred hHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC-eeeecCchHHHHHHHHHHHHHHhC
Confidence 3678899999999999999999999999999999999999999999999998776 799999999999999999999999
Q ss_pred CccCCeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCC
Q 010422 85 VELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~ 155 (511)
..+|..|||.+++++.++..++|+ +.+.+..|..+++||+||||||+.++|.++++++.++.+|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larR------- 498 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR------- 498 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhh-------
Confidence 999999999999999998887765 5667788999999999999999999999999999999998
Q ss_pred CCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCCC
Q 010422 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 235 (511)
Q Consensus 156 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (511)
.++++|.+|||+|.+.|++|||++|.+.++|+.|||++.|...+..
T Consensus 499 ----------------------------------rdlKliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~e 544 (1042)
T KOG0924|consen 499 ----------------------------------RDLKLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVE 544 (1042)
T ss_pred ----------------------------------ccceEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchH
Confidence 7899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCC-CCCCeEEEEccCCCCHHHHHhhcCcCCCCCe
Q 010422 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE-ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR 314 (511)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~-~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~ 314 (511)
+|+++++...+.++.....|++|||.++.++++..+..+...+.++.. ...++.|.++++.||.+-|.++|.....|.+
T Consensus 545 DYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vR 624 (1042)
T KOG0924|consen 545 DYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVR 624 (1042)
T ss_pred HHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCce
Confidence 999999999999999998999999999999999999999888776543 3358899999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhh-cc
Q 010422 315 KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LE 393 (511)
Q Consensus 315 ~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~-~~ 393 (511)
|+|||||+||++++||+|.||||+|+++.+.|+|..|+..+...|+|++++.||+|||||.|+|.||++|++..|.. |.
T Consensus 625 K~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 625 KCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred eEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988865 99
Q ss_pred CCCCCcccccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHH
Q 010422 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKA 473 (511)
Q Consensus 394 ~~~~pei~~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~ 473 (511)
+.++|||++.+|.+++|.++++|++++..|+|++||+.+.+..++-.|..+|||+..|.+|+ +|+.|+.+|++|.++||
T Consensus 705 ~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~-lG~~MvefpLDP~lsKm 783 (1042)
T KOG0924|consen 705 PSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLTP-LGRKMVEFPLDPPLSKM 783 (1042)
T ss_pred cCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccch-hhHHhhhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 99999999999999999
Q ss_pred HHHhhhcCCHHHHHHHHHhhcCCCcccCChhhhhc
Q 010422 474 LIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRR 508 (511)
Q Consensus 474 ~~~~~~~~~~~~~l~i~a~l~~~~~~~~~~~~~~~ 508 (511)
++-+..++|++|+++|++|||++.+|++|.+..+.
T Consensus 784 ll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~ee 818 (1042)
T KOG0924|consen 784 LLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEE 818 (1042)
T ss_pred HHHHhccCcHHHHHHHHHHhcccceeeccccchhh
Confidence 99999999999999999999999999999876543
No 4
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-86 Score=695.53 Aligned_cols=455 Identities=51% Similarity=0.805 Sum_probs=430.5
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.+...+..+|++....++..++.+++.++|+|||||||||++|+++++..+. .+..|++++|+|.+|..++++++++++
T Consensus 41 ~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~-~~g~I~~tQPRRlAArsvA~RvAeel~ 119 (845)
T COG1643 41 DILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG-IAGKIGCTQPRRLAARSVAERVAEELG 119 (845)
T ss_pred hhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc-cCCeEEecCchHHHHHHHHHHHHHHhC
Confidence 3466778899999999999999999999999999999999999999999883 345799999999999999999999999
Q ss_pred CccCCeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCC
Q 010422 85 VELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~ 155 (511)
..+|..|||.+++++.++..|+++ +++.|+.|+.+++||+||+|||+.++|++++++++++..|.
T Consensus 120 ~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr------ 193 (845)
T COG1643 120 EKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR------ 193 (845)
T ss_pred CCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC------
Confidence 999999999999999998888765 66679999999999999999999999999999999888761
Q ss_pred CCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCCC
Q 010422 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 235 (511)
Q Consensus 156 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (511)
+++|+|+||||+|.+.|++||+++|++.++|+.||++++|......
T Consensus 194 ----------------------------------~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~ 239 (845)
T COG1643 194 ----------------------------------DDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEA 239 (845)
T ss_pred ----------------------------------CCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCc
Confidence 4799999999999999999999999999999999999999988888
Q ss_pred ch-HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHH-HHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCC
Q 010422 236 DY-LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQE-RLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (511)
Q Consensus 236 ~~-~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~ 313 (511)
++ ++..+...+.++..+..|.+|||+|+.++++.+++.|.+ .+. ....+.++||.|+.++|.++|+....|+
T Consensus 240 d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~ 313 (845)
T COG1643 240 DYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG------DDLEILPLYGALSAEEQVRVFEPAPGGK 313 (845)
T ss_pred chhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc------CCcEEeeccccCCHHHHHhhcCCCCCCc
Confidence 88 999999999999999999999999999999999999988 221 3789999999999999999999999999
Q ss_pred eEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhhcc
Q 010422 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLE 393 (511)
Q Consensus 314 ~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~ 393 (511)
+|||+|||+||+|++||+|++|||+|+.+.+.||+.+|+..+.+.|+|++++.||+|||||.++|+||+||++++|..++
T Consensus 314 RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~ 393 (845)
T COG1643 314 RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFP 393 (845)
T ss_pred ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCccHHHHHHHHcCCC-CCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHH
Q 010422 394 DSTKPEIKRCNLSNVILQLKALGVD-DIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSK 472 (511)
Q Consensus 394 ~~~~pei~~~~l~~~~L~~~~~~~~-~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~ 472 (511)
.+..|||++.+|+.++|+++++|+. ++..|+|+++|+..++..|++.|..+||+|.++.+|+ +|+.|+.+|++|++|+
T Consensus 394 ~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~-lG~~ms~lpldprLA~ 472 (845)
T COG1643 394 EFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTP-LGKQMSLLPLDPRLAR 472 (845)
T ss_pred cCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCCH-HHHHHHhCCCChHHHH
Confidence 9999999999999999999999996 9999999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHhhhcCCHHHHHHHHHhhcCCC---cccCChhhhh
Q 010422 473 ALIVAGQFNCLEEMLITVAMLSVES---IFFRSPGEVR 507 (511)
Q Consensus 473 ~~~~~~~~~~~~~~l~i~a~l~~~~---~~~~~~~~~~ 507 (511)
|++.+..++|.+++++|+|+|++++ .|..+.+..+
T Consensus 473 mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~ 510 (845)
T COG1643 473 MLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRK 510 (845)
T ss_pred HHHhccccCcHHHHHHHHHhhccCCCcchhccccchhh
Confidence 9999999999999999999999999 6777766544
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-86 Score=627.04 Aligned_cols=457 Identities=51% Similarity=0.825 Sum_probs=434.8
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
+..+++.+..+|++.++.+....+.+++.++++|.|||||||++|+|..+...... ..+.|++|+|.++.+++++++++
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprrvaamsva~RVadE 114 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRRVAAMSVAQRVADE 114 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999988766555 45889999999999999999999
Q ss_pred hCCccCCeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccC
Q 010422 83 SGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (511)
Q Consensus 83 ~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~ 153 (511)
+...+|..|||.++++++.+..+.++ ++++++.+..+++||+||+|||+..+|.+++++++++..|
T Consensus 115 MDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r----- 189 (699)
T KOG0925|consen 115 MDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR----- 189 (699)
T ss_pred hccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-----
Confidence 99999999999999999998887665 6677899999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCC
Q 010422 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYP 233 (511)
Q Consensus 154 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (511)
+++|+|.||||++.++|..||+++|.+.++| .+|++++|...+
T Consensus 190 ------------------------------------pdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~ 232 (699)
T KOG0925|consen 190 ------------------------------------PDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEP 232 (699)
T ss_pred ------------------------------------CCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCC
Confidence 8999999999999999999999999999999 999999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-
Q 010422 234 EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG- 312 (511)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g- 312 (511)
..+|+++++.+++.+|..+..|++|||+++.++++.+++.+......+..+.....+.++| +.++..+|++.+..
T Consensus 233 erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~ 308 (699)
T KOG0925|consen 233 ERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKR 308 (699)
T ss_pred ChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCccc
Confidence 9999999999999999999999999999999999999999998888888888899999999 66777888876532
Q ss_pred ----CeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhh
Q 010422 313 ----FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENE 388 (511)
Q Consensus 313 ----~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~ 388 (511)
.+||+|+|+++|.++++++|.+|||.|+.++++|+|+.+.+.+...|+|++++.||+|||||..+|+||+||+++.
T Consensus 309 ~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 309 NGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEA 388 (699)
T ss_pred CCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHh
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-ccCCCCCcccccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCC
Q 010422 389 FDK-LEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLD 467 (511)
Q Consensus 389 ~~~-~~~~~~pei~~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~ 467 (511)
++. |.+...|||++.+|.+++|++|.+|++++..|+|++||.++.+.+|++.|..++|+|++|++|+ +|..|+.+|+|
T Consensus 389 ~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~-lG~imSEFPLd 467 (699)
T KOG0925|consen 389 FEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTS-LGEIMSEFPLD 467 (699)
T ss_pred hhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccch-hhhhhhcCCCC
Confidence 976 9999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhhh
Q 010422 468 PIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVR 507 (511)
Q Consensus 468 p~~~~~~~~~~~~~~~~~~l~i~a~l~~~~~~~~~~~~~~ 507 (511)
|.+||||+.+.+|+|.+|+++|+|||++++.|.+|+.+-+
T Consensus 468 PqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~ 507 (699)
T KOG0925|consen 468 PQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSAS 507 (699)
T ss_pred hHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHH
Confidence 9999999999999999999999999999999999995543
No 6
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-80 Score=619.70 Aligned_cols=468 Identities=43% Similarity=0.697 Sum_probs=429.9
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC----CeEEEEeCccHHHHHHHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRRVAAVTVAKRV 79 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~----~~~i~~~~p~~~l~~~~~~~~ 79 (511)
-++.+.+..||+....+++.++|..|..++|||.|||||||++|++++++++... +..|.+++|+|.++..+++|+
T Consensus 246 ~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 246 AEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHH
Confidence 4688899999999999999999999999999999999999999999999998665 668999999999999999999
Q ss_pred HHHhCCccCCeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcc
Q 010422 80 AEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (511)
Q Consensus 80 ~~~~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~ 150 (511)
+.+.+. .+..|||.+++++.....+.|+ ++..|..|..++.||+||||||++++|.++++|.+++..|.+
T Consensus 326 a~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 326 AFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred HHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHH
Confidence 999987 8899999999999988877765 666778899999999999999999999999999999998855
Q ss_pred ccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHH---hhhC-CCCeEEeCCcccccc
Q 010422 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFG-CAKAVHVQGRQFPVE 226 (511)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~---~~~~-~~~~~~~~~~~~~~~ 226 (511)
.+... ....++++|+||||+...+|. ..|. -+|++.++.++||+.
T Consensus 405 ~~ke~-------------------------------~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVs 453 (1172)
T KOG0926|consen 405 YYKEQ-------------------------------CQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVS 453 (1172)
T ss_pred Hhhhh-------------------------------cccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceE
Confidence 43110 011688999999999877776 3454 357999999999999
Q ss_pred EEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHh---------------------------
Q 010422 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL--------------------------- 279 (511)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~--------------------------- 279 (511)
++|......+|+..++...+.+|...+.|.||||+.+..+++.+.+.|++.+.
T Consensus 454 IHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~ 533 (1172)
T KOG0926|consen 454 IHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGD 533 (1172)
T ss_pred EEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999998833
Q ss_pred ---------------------------------------------------------------cCCCCCCCeEEEEccCC
Q 010422 280 ---------------------------------------------------------------QLPEASRKLVTVPIFSS 296 (511)
Q Consensus 280 ---------------------------------------------------------------~~~~~~~~~~v~~lh~~ 296 (511)
.-......+.+.++|+-
T Consensus 534 ~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSL 613 (1172)
T KOG0926|consen 534 SNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSL 613 (1172)
T ss_pred CcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhh
Confidence 00011236789999999
Q ss_pred CCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
++.++|.+||+..+.|.+-++||||+||++++||+|+||||||..+++.||..+|++.+...|+|+++.-||+|||||.|
T Consensus 614 Ls~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 614 LSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred cCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecChhhHh-hccCCCCCcccccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCH
Q 010422 377 PGKCFRLYPENEFD-KLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSD 455 (511)
Q Consensus 377 ~G~~~~l~~~~~~~-~~~~~~~pei~~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~ 455 (511)
+|+||+||+...|+ .+..++.|||++.+.++++|++|++++.++.+|+|++||...++..|...|..+||||.+|.+|.
T Consensus 694 pGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~ 773 (1172)
T KOG0926|consen 694 PGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTK 773 (1172)
T ss_pred CCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCccc
Confidence 99999999999998 59999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHccCCCCHHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChh
Q 010422 456 PVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPG 504 (511)
Q Consensus 456 ~lG~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~i~a~l~~~~~~~~~~~ 504 (511)
||+.||.+|+.|+.+|||+.+.+.+|+.-.+.++++|++..+|+.-..
T Consensus 774 -lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ 821 (1172)
T KOG0926|consen 774 -LGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIVAAS 821 (1172)
T ss_pred -ccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhhhhh
Confidence 999999999999999999999999999999999999999988876443
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.9e-79 Score=663.47 Aligned_cols=446 Identities=44% Similarity=0.717 Sum_probs=404.0
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCcc
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 87 (511)
.....||++.+..+++.++.++++++|+|+|||||||++|+++++..... ...|++++|+|.++..++++++++.+..+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~-~~~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGS-HGLIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCC-CceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 34567999999999999999999999999999999999999999876432 34789999999999999999999999999
Q ss_pred CCeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCC
Q 010422 88 GQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 158 (511)
Q Consensus 88 ~~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 158 (511)
|..|||.+++++..+..+++. .+..++.+.++++|||||+|||+.++|.++++++++...|
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r---------- 209 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR---------- 209 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC----------
Confidence 999999999988877666553 5556788999999999999999999999999999998777
Q ss_pred CCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCC----
Q 010422 159 NNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE---- 234 (511)
Q Consensus 159 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 234 (511)
++.|+|+||||++.+.++++|++++++.++++.+|+++.|.....
T Consensus 210 -------------------------------pdLKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~ 258 (1283)
T TIGR01967 210 -------------------------------PDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQED 258 (1283)
T ss_pred -------------------------------CCCeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccc
Confidence 788999999999999999999999999999999999999876432
Q ss_pred --CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC
Q 010422 235 --PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG 312 (511)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g 312 (511)
.++.+.....+..+.. ...|++|||+|++++++.+++.|.+.. ..++.+.++||+|++++|.++++.+ +
T Consensus 259 ~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~ 329 (1283)
T TIGR01967 259 DDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRN------LRHTEILPLYARLSNKEQQRVFQPH--S 329 (1283)
T ss_pred hhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcC------CCCcEEEeccCCCCHHHHHHHhCCC--C
Confidence 1344444444444443 357899999999999999999998642 1256799999999999999998875 3
Q ss_pred CeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhhc
Q 010422 313 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 392 (511)
Q Consensus 313 ~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~ 392 (511)
.++||||||++|+|+|||+|++|||+|+.+...||+.+++..+...|+|+++|.||+|||||.++|.||+||++++|..+
T Consensus 330 ~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~ 409 (1283)
T TIGR01967 330 GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSR 409 (1283)
T ss_pred CceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCC---CCCHHHHHHHccCCCCHH
Q 010422 393 EDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPI 469 (511)
Q Consensus 393 ~~~~~pei~~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~---~~T~~lG~~~~~~~~~p~ 469 (511)
+++..|||++.+|..++|+++++|+.++..|+|++||+.+++..|++.|..+||||+++ ++|+ +|+.|+.+|++|+
T Consensus 410 ~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~-lGr~ma~LPldPr 488 (1283)
T TIGR01967 410 PEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTP-IGRQLAQLPVDPR 488 (1283)
T ss_pred hhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccH-HHHHHhhcCCChH
Confidence 99999999999999999999999999999999999999999999999999999999988 7997 9999999999999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhh
Q 010422 470 YSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGE 505 (511)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~i~a~l~~~~~~~~~~~~ 505 (511)
+|+||+.+..++|.+++++|+|+|+++++|..|.++
T Consensus 489 larmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~ 524 (1283)
T TIGR01967 489 LARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEK 524 (1283)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchh
Confidence 999999999999999999999999999999988754
No 8
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.8e-79 Score=660.07 Aligned_cols=446 Identities=42% Similarity=0.682 Sum_probs=399.2
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (511)
.+..||++.+.++++..+.++++++|+|+|||||||++|+++++.+... ...|++++|++.++..++++++++.+..+|
T Consensus 69 ~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 69 YPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 3567999999999999999999999999999999999999998865432 236889999999999999999999998899
Q ss_pred CeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCC
Q 010422 89 QRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (511)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 159 (511)
..+||.++++...+..+.|. .+..++.+++++++||||+|||+.++|.++++++++...+
T Consensus 148 ~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r----------- 216 (1294)
T PRK11131 148 GCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR----------- 216 (1294)
T ss_pred ceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcC-----------
Confidence 99999998877665444332 4556788999999999999999999999999999887766
Q ss_pred CCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCCC----
Q 010422 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP---- 235 (511)
Q Consensus 160 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 235 (511)
++.|+|+||||++.+.++++|++.+++.++++.+|++++|......
T Consensus 217 ------------------------------pdlKvILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~ 266 (1294)
T PRK11131 217 ------------------------------PDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDT 266 (1294)
T ss_pred ------------------------------CCceEEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchh
Confidence 7889999999999999999999999999999999999998765432
Q ss_pred --chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCC
Q 010422 236 --DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (511)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~ 313 (511)
+++...+..+..+. ....|++|||||++++++.+++.|.+. ......+.++||+|++++|.++++. .|.
T Consensus 267 ~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~ 337 (1294)
T PRK11131 267 ERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSG 337 (1294)
T ss_pred hHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCC
Confidence 23444444443333 345789999999999999999999864 1124568999999999999999986 478
Q ss_pred eEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhhcc
Q 010422 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLE 393 (511)
Q Consensus 314 ~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~ 393 (511)
++||||||++|+|||||+|++|||+|+.+.+.||+.+++..+...|+|+++|.||+|||||.++|.||+||++++|..++
T Consensus 338 rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~ 417 (1294)
T PRK11131 338 RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRP 417 (1294)
T ss_pred eeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCC-----CCCCHHHHHHHccCCCCH
Q 010422 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDD-----CKLSDPVGHQMARLPLDP 468 (511)
Q Consensus 394 ~~~~pei~~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~-----~~~T~~lG~~~~~~~~~p 468 (511)
++..|||++.+|..++|+++++|+.++..|+|++||+.+++..|++.|..+||||.+ +++|+ +|+.|+++|++|
T Consensus 418 ~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~-lG~~la~LPldP 496 (1294)
T PRK11131 418 EFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTP-LGRQLAQLPVDP 496 (1294)
T ss_pred cccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcH-HHHHHHhCCCCh
Confidence 999999999999999999999999999999999999999999999999999999854 57997 999999999999
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhh
Q 010422 469 IYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEV 506 (511)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~i~a~l~~~~~~~~~~~~~ 506 (511)
++||||+.+..++|++|+++|+|+|+++++|..|.++.
T Consensus 497 rlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~ 534 (1294)
T PRK11131 497 RLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQ 534 (1294)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhH
Confidence 99999999999999999999999999999999998653
No 9
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6e-78 Score=643.24 Aligned_cols=438 Identities=36% Similarity=0.527 Sum_probs=395.4
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeee
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg 92 (511)
+|++.+..+++.++.++++++++|||||||||++|+++++... .+.++++++|+|.++.+++++++++.+..++..+|
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 6899999999999999999999999999999999999998753 24579999999999999999999999999999999
Q ss_pred EEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHH-hhccccCCCCCCCCCC
Q 010422 93 YSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN-ARSKSADGHSNGNNNN 162 (511)
Q Consensus 93 ~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~~~g 162 (511)
|.++++...+..++|. .+..++.++++++|||||+|||+.++|.++.+++++.. .+
T Consensus 79 y~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr-------------- 144 (819)
T TIGR01970 79 YRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLR-------------- 144 (819)
T ss_pred EEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcC--------------
Confidence 9998876655444332 44457889999999999999999999999988887654 23
Q ss_pred CCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCchHHHHH
Q 010422 163 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATL 242 (511)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (511)
++.|+|+||||++.+.+.+||++++++.++++.+|++++|......++....+
T Consensus 145 ---------------------------~dlqlIlmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 145 ---------------------------EDLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred ---------------------------CCceEEEEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHH
Confidence 67899999999998889999999999999999999999998766555544433
Q ss_pred HHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccc
Q 010422 243 ITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 322 (511)
Q Consensus 243 ~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~ 322 (511)
...+........|++|||+|++++++.+++.|.+.+. .++.+.++||+|++++|.++++.|++|+++||||||+
T Consensus 198 ~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnI 271 (819)
T TIGR01970 198 SRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNI 271 (819)
T ss_pred HHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecch
Confidence 3222222233478999999999999999999987532 2788999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhhccCCCCCcccc
Q 010422 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKR 402 (511)
Q Consensus 323 ~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~~ 402 (511)
+|+|||||+|++|||+|+.+...||+.+|++.+.+.|+|+++|.||+|||||.++|.||+||+++++..+.++..|||++
T Consensus 272 AErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r 351 (819)
T TIGR01970 272 AETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQ 351 (819)
T ss_pred HhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHHHHHhhhcCC
Q 010422 403 CNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNC 482 (511)
Q Consensus 403 ~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~~~ 482 (511)
.+|..++|+++.+|+.++..|+|+++|+.+++..|++.|..+||||.++++|+ +|+.|+.+|++|++|+||+.+..++|
T Consensus 352 ~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~~~lT~-~G~~~~~lp~~p~l~~~ll~~~~~~~ 430 (819)
T TIGR01970 352 ADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQGRLTA-HGKAMAALGCHPRLAAMLLSAHSTGL 430 (819)
T ss_pred cCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCCCCCCcCH-HHHHHHhcCCCHHHHHHHHHhhhcCC
Confidence 99999999999999998888999999999999999999999999999999997 99999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccc
Q 010422 483 LEEMLITVAMLSVESIFF 500 (511)
Q Consensus 483 ~~~~l~i~a~l~~~~~~~ 500 (511)
.+++++|+|+|+.++++.
T Consensus 431 ~~~~~~iaa~ls~~~~~~ 448 (819)
T TIGR01970 431 AALACDLAALLEERGLPR 448 (819)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 999999999999998754
No 10
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=3e-78 Score=631.07 Aligned_cols=461 Identities=40% Similarity=0.619 Sum_probs=415.3
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
..++.+.+..+|.+..+++++.++.++++++|+|.|||||||++|+++++..... +...++|++|+|..|..+++++++
T Consensus 162 ~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ 241 (924)
T KOG0920|consen 162 YKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAK 241 (924)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999876543 356799999999999999999999
Q ss_pred HhCCccCCeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcccc
Q 010422 82 ESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (511)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~ 152 (511)
+.+...|..|||.++.++..+..+++. .+..++.+.+++++|+||+|||+.++|.++.+++.++..|
T Consensus 242 ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~---- 317 (924)
T KOG0920|consen 242 ERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN---- 317 (924)
T ss_pred HhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC----
Confidence 999999999999999888776555432 5566889999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCC
Q 010422 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 232 (511)
Q Consensus 153 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (511)
+++|+|+||||+|.+.|.+||++++++.++|+.+|+..+|..+
T Consensus 318 -------------------------------------p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLED 360 (924)
T KOG0920|consen 318 -------------------------------------PDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLED 360 (924)
T ss_pred -------------------------------------CCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999998876543
Q ss_pred C-----------------CCc--------------hHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcC
Q 010422 233 P-----------------EPD--------------YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 281 (511)
Q Consensus 233 ~-----------------~~~--------------~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~ 281 (511)
. ... ..+.....+..++.....|.||||+|+.+++..+...|......
T Consensus 361 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f- 439 (924)
T KOG0920|consen 361 ILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPF- 439 (924)
T ss_pred HHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccc-
Confidence 0 011 11223344555666666899999999999999999998754321
Q ss_pred CCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecC
Q 010422 282 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (511)
Q Consensus 282 ~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s 361 (511)
.+..++.+.++|+.|+.++|+.|+...+.|.+|||+|||+||++|+||||.+|||+|+.++..||+..++..+...|+|
T Consensus 440 -~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvS 518 (924)
T KOG0920|consen 440 -ADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVS 518 (924)
T ss_pred -ccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeecc
Confidence 2225789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCeEEEecChhhHhhccC-CCCCcccccCccHHHHHHHHcCCCCCCcc--cCCCCCCHHHHHHHH
Q 010422 362 KAQALQRSGRAGREGPGKCFRLYPENEFDKLED-STKPEIKRCNLSNVILQLKALGVDDIIGF--DFMEKPSRASIIKSL 438 (511)
Q Consensus 362 ~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~-~~~pei~~~~l~~~~L~~~~~~~~~~~~~--~~~~~p~~~~l~~al 438 (511)
+++..||+|||||..+|.||++|++..|+.+.. +.+|||++.+|.+++|++|.+++..+..| ..++||+.+++..|+
T Consensus 519 kAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~ 598 (924)
T KOG0920|consen 519 KANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAI 598 (924)
T ss_pred ccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHH
Confidence 999999999999999999999999999999777 99999999999999999998888776644 568999999999999
Q ss_pred HHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhhh
Q 010422 439 EQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVR 507 (511)
Q Consensus 439 ~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~i~a~l~~~~~~~~~~~~~~ 507 (511)
..|.++||++.+.++|+ ||+.++.+|+||+.||+++.|..|+|++|+++|+|+|+.++||..|.++..
T Consensus 599 ~~L~~igaL~~~e~LT~-LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~ 666 (924)
T KOG0920|consen 599 ERLKQIGALDESEELTP-LGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKRE 666 (924)
T ss_pred HHHHHhccccCcccchH-HHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchh
Confidence 99999999999999997 999999999999999999999999999999999999999999999987643
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.3e-75 Score=625.16 Aligned_cols=436 Identities=35% Similarity=0.552 Sum_probs=390.9
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
.||++.+..+++.++.++++++++|||||||||++|+++++.... +.++++++|+|+++.++++++++..+..++..+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 489999999999999999999999999999999999999986543 247999999999999999999999999999999
Q ss_pred eEEEeecccCChhhhH--------H-HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHh-hccccCCCCCCCCC
Q 010422 92 GYSIRFDDRTSTSTRI--------K-EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA-RSKSADGHSNGNNN 161 (511)
Q Consensus 92 g~~~~~~~~~~~~~~i--------~-~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~ 161 (511)
||..+++...+..+++ . .+..++.++++++|||||+|+|+.++|.++++++++... +
T Consensus 81 Gy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr------------- 147 (812)
T PRK11664 81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLR------------- 147 (812)
T ss_pred EEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC-------------
Confidence 9998877655443332 2 334578899999999999999999999999988876542 3
Q ss_pred CCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCchHHHH
Q 010422 162 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDAT 241 (511)
Q Consensus 162 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (511)
++.|+|+||||++.+.+++|+++++.+.++++.+|++.+|...+..++.+..
T Consensus 148 ----------------------------~~lqlilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~ 199 (812)
T PRK11664 148 ----------------------------DDLKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEA 199 (812)
T ss_pred ----------------------------ccceEEEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHH
Confidence 6789999999999889999999999999999999999999877766666554
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecc
Q 010422 242 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN 321 (511)
Q Consensus 242 ~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~ 321 (511)
+...+........|++|||+|++++++.+++.|.+... .++.+.++||+|+.++|.++++.|++|+++||||||
T Consensus 200 v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn 273 (812)
T PRK11664 200 VARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN 273 (812)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc
Confidence 44333333334479999999999999999999987421 267899999999999999999999999999999999
Q ss_pred ccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhhccCCCCCccc
Q 010422 322 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIK 401 (511)
Q Consensus 322 ~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~ 401 (511)
++|+|+|||+|++|||+|+.+...||+.+|++.+.+.|+|+++|.||+|||||.++|.||+||++++|+.+.++..|||+
T Consensus 274 IAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~ 353 (812)
T PRK11664 274 IAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEIL 353 (812)
T ss_pred hHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHHHHHhhhcC
Q 010422 402 RCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFN 481 (511)
Q Consensus 402 ~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~~ 481 (511)
+.+|+.++|.++++|+.++..|+|++||+.+++..|++.|..+||||+++++|+ +|+.|+.+|++|++|+|++.+..++
T Consensus 354 r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~~g~lT~-~G~~m~~lp~~Prla~~ll~a~~~~ 432 (812)
T PRK11664 354 HSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDGQGRLTA-RGRKMAALGNDPRLAAMLVAAKEDD 432 (812)
T ss_pred ccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcCH-HHHHHHhcCCchHHHHHHHHHHhcC
Confidence 999999999999999988888999999999999999999999999999999997 9999999999999999999999998
Q ss_pred CHH--HHHHHHHhhcCCC
Q 010422 482 CLE--EMLITVAMLSVES 497 (511)
Q Consensus 482 ~~~--~~l~i~a~l~~~~ 497 (511)
|.. .+..++|+|+.++
T Consensus 433 ~~~l~~a~~laall~e~~ 450 (812)
T PRK11664 433 EAALATAAKLAAILEEPP 450 (812)
T ss_pred chhhHHHHHHHHhhccCC
Confidence 764 6788888888763
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.5e-55 Score=460.61 Aligned_cols=392 Identities=23% Similarity=0.304 Sum_probs=299.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhc-----cc--------cCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA-----GF--------CRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~-----~~--------~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
.+|+++++.+.+|++++++|+||||||+++|+++++. ++ ......+++++|+++++.++..++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999988753 11 1124579999999999999998887765
Q ss_pred CCccCCeeeEEEeecccCCh--hhhHH--------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccC
Q 010422 84 GVELGQRVGYSIRFDDRTST--STRIK--------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~--~~~i~--------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~ 153 (511)
+......+.+..++.+.... .+... ..+..+.+.+++++|+||||||+..+|.++.++++....
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~------ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK------ 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhh------
Confidence 54211111222233222211 11100 112334688899999999999999999999998865432
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhhhCCCCeEEeCCcc-ccccEEEc
Q 010422 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKAVHVQGRQ-FPVEILYT 230 (511)
Q Consensus 154 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~ 230 (511)
..|+++||||+ +.+.+.+|+++++.+.++++. +|++.+|.
T Consensus 321 -------------------------------------~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi 363 (675)
T PHA02653 321 -------------------------------------IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYV 363 (675)
T ss_pred -------------------------------------cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEe
Confidence 13899999999 566889999999999999885 89998886
Q ss_pred CCCC-----CchHHHHHHHHHHHhh---cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 010422 231 LYPE-----PDYLDATLITIFQVHL---DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (511)
Q Consensus 231 ~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r 302 (511)
.... .++.+.....+...+. ...++++|||||++++++.+++.|.+.. +++.+.++||+|++.
T Consensus 364 ~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~-- 434 (675)
T PHA02653 364 KNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNI-- 434 (675)
T ss_pred ecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHH--
Confidence 5432 1222222222222222 2236789999999999999999998752 257899999999975
Q ss_pred HhhcCcC-CCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEE
Q 010422 303 MRVFAPA-AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCF 381 (511)
Q Consensus 303 ~~i~~~f-~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~ 381 (511)
++.++.| ++|+++||||||+||+|+|||+|++|||+|+.+.+. +..+. ..|+|+++|.||+|||||.++|.||
T Consensus 435 eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~ 508 (675)
T PHA02653 435 DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYV 508 (675)
T ss_pred HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEE
Confidence 3445555 789999999999999999999999999999876553 33333 3589999999999999999999999
Q ss_pred EecChhhHhhccCCCCCcccccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHH--HH
Q 010422 382 RLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPV--GH 459 (511)
Q Consensus 382 ~l~~~~~~~~~~~~~~pei~~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~l--G~ 459 (511)
+||+++++.. .+++...+|..++|+++++|++.. .+.|++||+.+++..|++.|..+|++|+ ++|. + |+
T Consensus 509 rLyt~~~~~p-----I~ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~-l~~~~ 579 (675)
T PHA02653 509 YFYDLDLLKP-----IKRIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYE-ILSNY 579 (675)
T ss_pred EEECHHHhHH-----HHHHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhh-hhccc
Confidence 9999987521 333344458999999999999544 4559999999999999999999998754 8998 9 99
Q ss_pred HHccCCCCHHHHHHHHHhhh
Q 010422 460 QMARLPLDPIYSKALIVAGQ 479 (511)
Q Consensus 460 ~~~~~~~~p~~~~~~~~~~~ 479 (511)
.++-+ +.||.+++|..
T Consensus 580 ~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 580 YVNML----EYAKIYVKGGI 595 (675)
T ss_pred cHHHH----HHhHHHhcccH
Confidence 99998 99999998853
No 13
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-45 Score=398.55 Aligned_cols=431 Identities=22% Similarity=0.242 Sum_probs=289.6
Q ss_pred HHHhhccCCCHHHHHHHHHH-HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 6 ILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~-l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.........++++|.+++.. +.+|++++++||||||||.++..+++.... .+.+++++.|+++++.+..+.+..+..
T Consensus 15 ~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~ 92 (737)
T PRK02362 15 FYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEE 92 (737)
T ss_pred HHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhc
Confidence 33333445689999999988 789999999999999999888888776653 245788899999999999998875421
Q ss_pred CccCCeeeEEEee-----------cccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccc
Q 010422 85 VELGQRVGYSIRF-----------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (511)
Q Consensus 85 ~~~~~~vg~~~~~-----------~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~ 151 (511)
.+..++..... +-.+.+..++..++.. .++++++++|+||+|.
T Consensus 93 --~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~---------------------- 148 (737)
T PRK02362 93 --LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL---------------------- 148 (737)
T ss_pred --CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc----------------------
Confidence 23333322110 1112234444445443 4678999999999992
Q ss_pred cCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCccccccEEEc
Q 010422 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYT 230 (511)
Q Consensus 152 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 230 (511)
..++.+|+.++.++ .++... .++.|+|+||||+ |++++++|++... +....++.++.....
T Consensus 149 ----l~d~~rg~~le~il------------~rl~~~-~~~~qii~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~v~ 210 (737)
T PRK02362 149 ----IDSANRGPTLEVTL------------AKLRRL-NPDLQVVALSATIGNADELADWLDAEL-VDSEWRPIDLREGVF 210 (737)
T ss_pred ----cCCCcchHHHHHHH------------HHHHhc-CCCCcEEEEcccCCCHHHHHHHhCCCc-ccCCCCCCCCeeeEe
Confidence 22233333333332 222211 1678999999999 9999999997542 222222222221110
Q ss_pred CC-----CC------CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCC-----------------
Q 010422 231 LY-----PE------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP----------------- 282 (511)
Q Consensus 231 ~~-----~~------~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~----------------- 282 (511)
.. .. ..........+..... .++++||||+|+++|+.+++.|.+......
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (737)
T PRK02362 211 YGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIRE 288 (737)
T ss_pred cCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 00 00 0000223333333332 478999999999999999999876532100
Q ss_pred -C---------CCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCc
Q 010422 283 -E---------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 352 (511)
Q Consensus 283 -~---------~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~ 352 (511)
. ......+..|||||++++|..+++.|++|.++|||||+++++|+|+|++++||+ ...+||+..+.
T Consensus 289 ~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~----~~~~yd~~~g~ 364 (737)
T PRK02362 289 VSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIR----DYRRYDGGAGM 364 (737)
T ss_pred ccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEe----cceeecCCCCc
Confidence 0 001246899999999999999999999999999999999999999999999997 46678865543
Q ss_pred ccceeeecCHHHHHHhccccCCCC---CCeEEEecChhh-----HhhccCCCCCcccc------cCccHHHHHHHHcCCC
Q 010422 353 ESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE-----FDKLEDSTKPEIKR------CNLSNVILQLKALGVD 418 (511)
Q Consensus 353 ~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~-----~~~~~~~~~pei~~------~~l~~~~L~~~~~~~~ 418 (511)
.|.+..+|.||+|||||.| .|.|+.++...+ |+.+... .|+-.. ..+...++...+.|..
T Consensus 365 -----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~-~~~~i~S~l~~~~~l~~~lla~I~~~~~ 438 (737)
T PRK02362 365 -----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA-DPEDVRSKLATEPALRTHVLSTIASGFA 438 (737)
T ss_pred -----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC-CCCceeecCCChhhHHHHHHHHHHhCcc
Confidence 4899999999999999999 499999996531 2333322 222211 2466667777776642
Q ss_pred C----CCc---ccCCCCC------CHHHHHHHHHHHHHcCCcCCCCC---CCHHHHHHHccCCCCHHHHHHHHHhhhcC-
Q 010422 419 D----IIG---FDFMEKP------SRASIIKSLEQLFLLGALTDDCK---LSDPVGHQMARLPLDPIYSKALIVAGQFN- 481 (511)
Q Consensus 419 ~----~~~---~~~~~~p------~~~~l~~al~~L~~~g~l~~~~~---~T~~lG~~~~~~~~~p~~~~~~~~~~~~~- 481 (511)
. +.. ..|+..+ ..+.++.+++.|.+.|+|+.++. .|+ +|++++.+|++|..+..+..++...
T Consensus 439 ~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~-lG~~~s~~~l~~~t~~~~~~~l~~~~ 517 (737)
T PRK02362 439 RTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATE-LGHLVSRLYIDPLSAAEIIDGLEAAK 517 (737)
T ss_pred CCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeECh-HHHHHHHhcCCHHHHHHHHHHhhhcc
Confidence 1 111 1333222 34568999999999999987654 887 9999999999999999998887543
Q ss_pred --CHHHHHHHHHhh
Q 010422 482 --CLEEMLITVAML 493 (511)
Q Consensus 482 --~~~~~l~i~a~l 493 (511)
....++-+++..
T Consensus 518 ~~~~~~~l~~i~~~ 531 (737)
T PRK02362 518 KPTDLGLLHLVCST 531 (737)
T ss_pred cCchHHHHHHhhcC
Confidence 223445455543
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-44 Score=388.84 Aligned_cols=413 Identities=19% Similarity=0.215 Sum_probs=273.2
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
..+.++++|++++..+.+|++++++||||||||+++.+++++.... +.+++++.|+++++.+..+.+.++. ..+..
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~ 94 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSRLR--SLGMR 94 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHHHh--hcCCe
Confidence 3567899999999999999999999999999999888888766543 3457777899999999998877543 23444
Q ss_pred eeEEEeecc-----------cCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCC
Q 010422 91 VGYSIRFDD-----------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 157 (511)
Q Consensus 91 vg~~~~~~~-----------~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~ 157 (511)
++....... .+.+..++..++.. ..+.+++++|+||+|...
T Consensus 95 v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~-------------------------- 148 (674)
T PRK01172 95 VKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG-------------------------- 148 (674)
T ss_pred EEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc--------------------------
Confidence 443322111 11122333333322 247889999999999432
Q ss_pred CCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCccccccEEEc--CCC-
Q 010422 158 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYT--LYP- 233 (511)
Q Consensus 158 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 233 (511)
++.+|+.++.++. ++... .++.|+|+||||+ |.+++++|++.. .+....++.|+..... ...
T Consensus 149 d~~rg~~le~ll~------------~~~~~-~~~~riI~lSATl~n~~~la~wl~~~-~~~~~~r~vpl~~~i~~~~~~~ 214 (674)
T PRK01172 149 DEDRGPTLETVLS------------SARYV-NPDARILALSATVSNANELAQWLNAS-LIKSNFRPVPLKLGILYRKRLI 214 (674)
T ss_pred CCCccHHHHHHHH------------HHHhc-CcCCcEEEEeCccCCHHHHHHHhCCC-ccCCCCCCCCeEEEEEecCeee
Confidence 2222222222221 11110 1678999999999 999999999754 3333445555443211 110
Q ss_pred ---CCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCC----------------CCCCeEEEEcc
Q 010422 234 ---EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE----------------ASRKLVTVPIF 294 (511)
Q Consensus 234 ---~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~----------------~~~~~~v~~lh 294 (511)
...........+... ...++++||||+|+++++.++..|.+....... ......+..||
T Consensus 215 ~~~~~~~~~~~~~~i~~~--~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~h 292 (674)
T PRK01172 215 LDGYERSQVDINSLIKET--VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHH 292 (674)
T ss_pred ecccccccccHHHHHHHH--HhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEec
Confidence 000000011111111 134789999999999999999999876432110 00123588899
Q ss_pred CCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCC
Q 010422 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (511)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR 374 (511)
|+|++++|..+++.|++|.++|||||+++++|+|+|+.++||+ ....|+.. ...|.|..+|.||+|||||
T Consensus 293 agl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~----~~~~~~~~------~~~~~s~~~~~Qm~GRAGR 362 (674)
T PRK01172 293 AGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR----DITRYGNG------GIRYLSNMEIKQMIGRAGR 362 (674)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc----CceEeCCC------CceeCCHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999999988885 33445421 1247999999999999999
Q ss_pred CC---CCeEEEecCh-hhH---hhccCCCCCcccccC------ccHHHHHHHHcCC----CCCCcc---cCC--CCCC--
Q 010422 375 EG---PGKCFRLYPE-NEF---DKLEDSTKPEIKRCN------LSNVILQLKALGV----DDIIGF---DFM--EKPS-- 430 (511)
Q Consensus 375 ~~---~G~~~~l~~~-~~~---~~~~~~~~pei~~~~------l~~~~L~~~~~~~----~~~~~~---~~~--~~p~-- 430 (511)
.| .|.++.+... +++ .++... .|+...+. ....+|...+.|. .++..| .|+ .+++
T Consensus 363 ~g~d~~g~~~i~~~~~~~~~~~~~~l~~-~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~ 441 (674)
T PRK01172 363 PGYDQYGIGYIYAASPASYDAAKKYLSG-EPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDE 441 (674)
T ss_pred CCCCCcceEEEEecCcccHHHHHHHHcC-CCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHH
Confidence 98 6777777542 222 233221 22221111 2222445555554 222222 444 3222
Q ss_pred -HHHHHHHHHHHHHcCCcCCCC--CCCHHHHHHHccCCCCHHHHHHHHHhhhcC
Q 010422 431 -RASIIKSLEQLFLLGALTDDC--KLSDPVGHQMARLPLDPIYSKALIVAGQFN 481 (511)
Q Consensus 431 -~~~l~~al~~L~~~g~l~~~~--~~T~~lG~~~~~~~~~p~~~~~~~~~~~~~ 481 (511)
.+.++.+++.|.+.|+|+.++ .+|+ +|++++.+|++|..++.+..++.-.
T Consensus 442 l~~~v~~~l~~L~~~~~i~~~~~~~~t~-lG~~~s~~~l~~~t~~~~~~~l~~~ 494 (674)
T PRK01172 442 IDYYIESSLKFLKENGFIKGDVTLRATR-LGKLTSDLYIDPESALILKSAFDHD 494 (674)
T ss_pred HHHHHHHHHHHHHHCCCcccCCcEeECH-HHHHHHHhCCCHHHHHHHHHHhhcc
Confidence 567899999999999998654 5787 9999999999999999998887554
No 15
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=4e-44 Score=361.88 Aligned_cols=453 Identities=34% Similarity=0.530 Sum_probs=389.9
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCC---eEEEEeCccHHHHHHHHHHHHH
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG---KLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~---~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
.+...+..+|+..+..+++..+..+..++|-+.||+||||++.+++++...++.. ..+++.+|++..+..++++++.
T Consensus 369 ~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~ 448 (1282)
T KOG0921|consen 369 KITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVAN 448 (1282)
T ss_pred hhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999998876652 3578899999999999999999
Q ss_pred HhCCccCCeeeEEEeecccCChhhhHH---------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcccc
Q 010422 82 ESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (511)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~ 152 (511)
+.+..++..+||.+++++.++...... +.+. .-+..+.++|+||+|+|...+|+++.+++.+....
T Consensus 449 er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e-~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty---- 523 (1282)
T KOG0921|consen 449 ERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMME-NGLRGISHVIIDEIHERDVDTDFVLIVLREMISTY---- 523 (1282)
T ss_pred hhHHhhcccccccccccccccccccceeeeccchhhhhhh-hcccccccccchhhhhhccchHHHHHHHHhhhccc----
Confidence 999999999999999998887654432 2222 34667899999999999999999999999887655
Q ss_pred CCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCC
Q 010422 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 232 (511)
Q Consensus 153 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (511)
.++++++||||+|.+.|..||+..+.+.+.++.+|++.++...
T Consensus 524 -------------------------------------~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led 566 (1282)
T KOG0921|consen 524 -------------------------------------RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLED 566 (1282)
T ss_pred -------------------------------------hhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHH
Confidence 7889999999999999999999999888888888875543321
Q ss_pred C----------------------C----------------CchH----------------HHHHHH-HHHHhhcCCCCcE
Q 010422 233 P----------------------E----------------PDYL----------------DATLIT-IFQVHLDEAPGDI 257 (511)
Q Consensus 233 ~----------------------~----------------~~~~----------------~~~~~~-~~~~~~~~~~~~~ 257 (511)
. . +.+. ....+. +..+....-.|.+
T Consensus 567 ~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gai 646 (1282)
T KOG0921|consen 567 IIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAV 646 (1282)
T ss_pred hhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccce
Confidence 0 0 0000 001111 1222233347889
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEe
Q 010422 258 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVID 337 (511)
Q Consensus 258 LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~ 337 (511)
|||.+..+.+-.+..++...- ...+...+.+.+.|+.++.+++.++++..+.|..++|++|++++..+++.++.+|||
T Consensus 647 lvflpgwa~i~~L~~~ll~~~--~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid 724 (1282)
T KOG0921|consen 647 LVFLPGWAEIMTLCNRLLEHQ--EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVID 724 (1282)
T ss_pred eeecCchHHhhhhhhhhhhhh--hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEe
Confidence 999999999999988876552 234455789999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhhccCCCCCcccccCccHHHHHHHHcCC
Q 010422 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGV 417 (511)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~~~~l~~~~L~~~~~~~ 417 (511)
.+..+...|-....+....+.|.|+-+..||.||+||..+|.|+++++...|+.+..+..||+.+.++.++.|..|.+.+
T Consensus 725 ~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l 804 (1282)
T KOG0921|consen 725 SCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRL 804 (1282)
T ss_pred eeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHh
Confidence 99999999988888888999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CCCCcc--cCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHHHHHhhhcCCHHHHHHHHHhhcC
Q 010422 418 DDIIGF--DFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSV 495 (511)
Q Consensus 418 ~~~~~~--~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~i~a~l~~ 495 (511)
..+..| .-+.||+..++..+-..|..++++|.+..+|. +|+.++++|+.|..+|+++.+.-++|.+-|+.+++.++.
T Consensus 805 ~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~-lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~ 883 (1282)
T KOG0921|consen 805 GSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTP-LGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSF 883 (1282)
T ss_pred hhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccc-hhhhhhhccCcccccceeeechhhccchhhhhhhccccc
Confidence 655544 44789999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred CCcccCC
Q 010422 496 ESIFFRS 502 (511)
Q Consensus 496 ~~~~~~~ 502 (511)
..+|+.-
T Consensus 884 ~~~~~~~ 890 (1282)
T KOG0921|consen 884 PTPFVPR 890 (1282)
T ss_pred ccccccc
Confidence 9877763
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-41 Score=368.47 Aligned_cols=432 Identities=16% Similarity=0.155 Sum_probs=282.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHH-HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~-l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
++..+....-.++++|.+++.. +.+|+++++++|||||||..+..+++...... +.+++++.|+++++.+..+++..+
T Consensus 13 ~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-~~~~l~l~P~~aLa~q~~~~~~~~ 91 (720)
T PRK00254 13 KRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-GGKAVYLVPLKALAEEKYREFKDW 91 (720)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHHHHHHHHHHH
Confidence 3444444555689999999986 88999999999999999988877777665433 446888899999999999887654
Q ss_pred hCCccCCeeeEEEeec-----------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 83 SGVELGQRVGYSIRFD-----------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 83 ~~~~~~~~vg~~~~~~-----------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
. ..+..++...... -.+.+..++..++.. .++++++++|+||+|.
T Consensus 92 ~--~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-------------------- 149 (720)
T PRK00254 92 E--KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-------------------- 149 (720)
T ss_pred h--hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc--------------------
Confidence 2 2333443222110 111233344444432 4678999999999993
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCccccccE-
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEI- 227 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~- 227 (511)
+.+..++..++.++.++. .+.|+|+||||+ |++++++|++... +....++.+...
T Consensus 150 ------------------l~~~~rg~~le~il~~l~----~~~qiI~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~ 206 (720)
T PRK00254 150 ------------------IGSYDRGATLEMILTHML----GRAQILGLSATVGNAEELAEWLNAEL-VVSDWRPVKLRKG 206 (720)
T ss_pred ------------------cCCccchHHHHHHHHhcC----cCCcEEEEEccCCCHHHHHHHhCCcc-ccCCCCCCcceee
Confidence 223333333333333333 567999999999 9999999997542 222233333321
Q ss_pred -EEcC-----CCC-CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCC-----------------
Q 010422 228 -LYTL-----YPE-PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE----------------- 283 (511)
Q Consensus 228 -~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~----------------- 283 (511)
.+.. ... ..+.......+.+... .++++||||+|++.++.++..+.+.+.....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (720)
T PRK00254 207 VFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEEN 284 (720)
T ss_pred EecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Confidence 1111 010 1111222222333332 3788999999999999998888654321100
Q ss_pred -------CCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccce
Q 010422 284 -------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 356 (511)
Q Consensus 284 -------~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~ 356 (511)
......+.+|||+|++++|..+++.|++|.++|||||+++++|+|+|++++||. ....|+ ..++
T Consensus 285 ~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~----~~~~~~-~~~~---- 355 (720)
T PRK00254 285 PTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIR----DTKRYS-NFGW---- 355 (720)
T ss_pred CCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEEC----CceEcC-CCCc----
Confidence 001236899999999999999999999999999999999999999999999996 334454 1222
Q ss_pred eeecCHHHHHHhccccCCCC---CCeEEEecChhh----HhhccCCCCCccccc------CccHHHHHHHHcCC-CCCC-
Q 010422 357 VVPISKAQALQRSGRAGREG---PGKCFRLYPENE----FDKLEDSTKPEIKRC------NLSNVILQLKALGV-DDII- 421 (511)
Q Consensus 357 ~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~----~~~~~~~~~pei~~~------~l~~~~L~~~~~~~-~~~~- 421 (511)
.+.+..+|.||+|||||.| .|.++.+.+.++ ++.+... .|+.... .+...++.....+. .+..
T Consensus 356 -~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~-~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~ 433 (720)
T PRK00254 356 -EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFG-KPEKLFSMLSNESAFRSQVLALITNFGVSNFKE 433 (720)
T ss_pred -eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhC-CchhhhccCCchHHHHHHHHHHHHhCCCCCHHH
Confidence 3567889999999999987 699999986533 3333222 2222222 23445555555442 2211
Q ss_pred -----cccC--CCCCC----HHHHHHHHHHHHHcCCcCCC----CCCCHHHHHHHccCCCCHHHHHHHHHhhhc----CC
Q 010422 422 -----GFDF--MEKPS----RASIIKSLEQLFLLGALTDD----CKLSDPVGHQMARLPLDPIYSKALIVAGQF----NC 482 (511)
Q Consensus 422 -----~~~~--~~~p~----~~~l~~al~~L~~~g~l~~~----~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~----~~ 482 (511)
...| ...|. .+.++.+++.|.+.|+|+.+ -..|+ +|++++.++++|..++.+..++.- ..
T Consensus 434 ~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~-lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~ 512 (720)
T PRK00254 434 LVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLP-LGIRTSQLYIDPLTAKKFKDAFPKIEKNPN 512 (720)
T ss_pred HHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeCh-HHHHHHHHhCCHHHHHHHHHHHHhhccCCC
Confidence 1122 12233 35678899999999999643 24686 999999999999999999877642 34
Q ss_pred HHHHHHHHHhhcC
Q 010422 483 LEEMLITVAMLSV 495 (511)
Q Consensus 483 ~~~~l~i~a~l~~ 495 (511)
...++-+++..+.
T Consensus 513 ~~~~l~~~~~~~e 525 (720)
T PRK00254 513 PLGIFQLIASTPD 525 (720)
T ss_pred HHHHHHHhhCCcc
Confidence 4556666655444
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-42 Score=342.43 Aligned_cols=316 Identities=21% Similarity=0.309 Sum_probs=239.3
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchh--chHHHHHhhccc-----cCCCeEEEEeCccHHHHHHHHHH
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--t~~~~~l~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~ 78 (511)
.+.....-.|+++|.+.++.+..|++++.+|.|||||| +++|.+...... ..++.+++++.|+|+++.|+.+.
T Consensus 105 ~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~ 184 (519)
T KOG0331|consen 105 ALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAE 184 (519)
T ss_pred HHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHH
Confidence 34445555689999999999999999999999999999 667766544321 12356899999999999999987
Q ss_pred HHHHhCCccCCeeeEEEe--------------ecccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHH
Q 010422 79 VAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (511)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~--------------~~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~ 142 (511)
..++.. ......-.... .+....+..++..++.. ..+++++++|+|||
T Consensus 185 ~~~~~~-~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA--------------- 248 (519)
T KOG0331|consen 185 AREFGK-SLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA--------------- 248 (519)
T ss_pred HHHHcC-CCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccH---------------
Confidence 665543 22211111111 11122344455555554 34779999999999
Q ss_pred HHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHH-hhhCCCCeEEeC
Q 010422 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQ 219 (511)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~-~~~~~~~~~~~~ 219 (511)
|+|+|++|..+++.++.+++. ++.|.++.|||. ..+.++ +|+++...+.+.
T Consensus 249 -----------------------DrMldmGFe~qI~~Il~~i~~---~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig 302 (519)
T KOG0331|consen 249 -----------------------DRMLDMGFEPQIRKILSQIPR---PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVG 302 (519)
T ss_pred -----------------------HhhhccccHHHHHHHHHhcCC---CcccEEEEeeeccHHHHHHHHHHhcCceEEEec
Confidence 699999999999999999964 444899999999 455566 566644344443
Q ss_pred Ccc-----ccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcc
Q 010422 220 GRQ-----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (511)
Q Consensus 220 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh 294 (511)
+.. +.+..+..... ..-....+..++..+....++++||||+|++.|+++++.++.. ++++..+|
T Consensus 303 ~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~iH 372 (519)
T KOG0331|consen 303 NKKELKANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVAIH 372 (519)
T ss_pred chhhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc---------Ccceeeec
Confidence 221 11111211222 1122333444444444566889999999999999999999886 68999999
Q ss_pred CCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCC
Q 010422 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (511)
Q Consensus 295 ~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR 374 (511)
|+.++++|..+++.|++|+..||||||+|++|+|+|+|++||| || +|.+.++|+||+||+||
T Consensus 373 Gd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------yd----------fP~~vEdYVHRiGRTGR 434 (519)
T KOG0331|consen 373 GDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YD----------FPNNVEDYVHRIGRTGR 434 (519)
T ss_pred ccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CC----------CCCCHHHHHhhcCcccc
Confidence 9999999999999999999999999999999999999999999 99 79999999999999999
Q ss_pred CC-CCeEEEecChhhHhh
Q 010422 375 EG-PGKCFRLYPENEFDK 391 (511)
Q Consensus 375 ~~-~G~~~~l~~~~~~~~ 391 (511)
.| .|.+|.+++..++..
T Consensus 435 a~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 435 AGKKGTAITFFTSDNAKL 452 (519)
T ss_pred CCCCceEEEEEeHHHHHH
Confidence 88 999999999988764
No 18
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.5e-40 Score=350.68 Aligned_cols=413 Identities=22% Similarity=0.289 Sum_probs=273.4
Q ss_pred CCHHHHHHHHHH-HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHH--HHhCCccCCe
Q 010422 14 PIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA--EESGVELGQR 90 (511)
Q Consensus 14 ~~~~~q~~~~~~-l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~--~~~~~~~~~~ 90 (511)
..++.|++.+.. +.+++|++|++|||||||.++.++++...... +.+++++.|.++++.+..+.+. ...|..++..
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~ 109 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIS 109 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEe
Confidence 356667666666 45569999999999999988877777765543 4568889999999999998887 3445444444
Q ss_pred eeEEE-------eecccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCC
Q 010422 91 VGYSI-------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNN 161 (511)
Q Consensus 91 vg~~~-------~~~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 161 (511)
+|-.. +.+..+.+.+++..++.+ .++..++++|+||+|
T Consensus 110 TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH--------------------------------- 156 (766)
T COG1204 110 TGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH--------------------------------- 156 (766)
T ss_pred cCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee---------------------------------
Confidence 43111 111223445555544443 367789999999999
Q ss_pred CCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCcccc--------ccEEEcCC
Q 010422 162 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFP--------VEILYTLY 232 (511)
Q Consensus 162 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 232 (511)
++.|..|++.++.++.+..... ..+|++++|||+ |.+++++|++.... ....++.| ........
T Consensus 157 -----~l~d~~RG~~lE~iv~r~~~~~-~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~ 229 (766)
T COG1204 157 -----LLGDRTRGPVLESIVARMRRLN-ELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADG 229 (766)
T ss_pred -----ecCCcccCceehhHHHHHHhhC-cceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecC
Confidence 3444445555555555555433 558999999999 99999999987644 11111111 11111111
Q ss_pred CCC----chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcC----------------CC---------
Q 010422 233 PEP----DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL----------------PE--------- 283 (511)
Q Consensus 233 ~~~----~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~----------------~~--------- 283 (511)
... ..-+.....+...+ ..++++||||+||+.+...|+.+.+.+... ..
T Consensus 230 ~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 307 (766)
T COG1204 230 KKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDE 307 (766)
T ss_pred ccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchH
Confidence 111 11122333333333 348899999999999999999998643311 00
Q ss_pred ---CCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeec
Q 010422 284 ---ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 360 (511)
Q Consensus 284 ---~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~ 360 (511)
+.....+..||+||+.++|..+++.|+.|+++||+||+++++|||.|+-++||. .+..||+..|+ .++
T Consensus 308 ~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g~-----~~i 378 (766)
T COG1204 308 ELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGGI-----VDI 378 (766)
T ss_pred HHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCCe-----EEC
Confidence 111246788999999999999999999999999999999999999999999996 77889985543 589
Q ss_pred CHHHHHHhccccCCCC---CCeEEEecC-hhhH---hhccCCCCCcccccC------ccHHHHHHHHcCCCCCCc---c-
Q 010422 361 SKAQALQRSGRAGREG---PGKCFRLYP-ENEF---DKLEDSTKPEIKRCN------LSNVILQLKALGVDDIIG---F- 423 (511)
Q Consensus 361 s~~~~~Qr~GRaGR~~---~G~~~~l~~-~~~~---~~~~~~~~pei~~~~------l~~~~L~~~~~~~~~~~~---~- 423 (511)
++.++.||+|||||+| .|..+.+.+ .++. ........||...+. +...++.+.+.+ +... .
T Consensus 379 ~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~--~~v~~~~~~ 456 (766)
T COG1204 379 PVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVG--DAVSWLELT 456 (766)
T ss_pred chhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEecc--chhhHHHHH
Confidence 9999999999999999 577777762 2221 223334444431111 111111111111 1100 0
Q ss_pred -----cCCC------CCCHHHHHHHHHHHHHcC-CcCCC---CCCCHHHHHHHccCCCCHHHHHHHHHhhhcC
Q 010422 424 -----DFME------KPSRASIIKSLEQLFLLG-ALTDD---CKLSDPVGHQMARLPLDPIYSKALIVAGQFN 481 (511)
Q Consensus 424 -----~~~~------~p~~~~l~~al~~L~~~g-~l~~~---~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~~ 481 (511)
.|.. .-....+..+++.|.+.+ .++.. -..|. +|+++++++++|..++.+......-
T Consensus 457 ~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate-~g~~~s~~yi~~~sa~~~~~~l~~~ 528 (766)
T COG1204 457 DFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATE-LGKLVSRLYIDPESAKIFRDLLAEL 528 (766)
T ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhH-HHHHhhhccCCHHHHHHHHHHHHHh
Confidence 0011 124567889999999986 55443 36787 9999999999999999988776443
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.6e-40 Score=339.78 Aligned_cols=308 Identities=20% Similarity=0.236 Sum_probs=222.8
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
..-.++++|+++++.+.+|++++++||||||||+.+.++++...... .+..++++.|+++++.|+.+.+........+.
T Consensus 23 g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~ 102 (460)
T PRK11776 23 GYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNI 102 (460)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCc
Confidence 34458999999999999999999999999999977777776654322 24468889999999999998776554221122
Q ss_pred eeeEEEee--------------cccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccC
Q 010422 90 RVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (511)
Q Consensus 90 ~vg~~~~~--------------~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~ 153 (511)
.+...... +-.+.+..++..++.. ..+.+++++|+||+|+
T Consensus 103 ~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~------------------------ 158 (460)
T PRK11776 103 KVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR------------------------ 158 (460)
T ss_pred EEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH------------------------
Confidence 22211110 1111233344444433 3478899999999983
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCC--HHHHHhh-hCCCCeEEeCCcc--ccccEE
Q 010422 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEY-FGCAKAVHVQGRQ--FPVEIL 228 (511)
Q Consensus 154 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~--~~~l~~~-~~~~~~~~~~~~~--~~~~~~ 228 (511)
|++.++...+..++..++ .+.|++++|||++ ...+... +.++..+.+.... ..++..
T Consensus 159 --------------~l~~g~~~~l~~i~~~~~----~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~ 220 (460)
T PRK11776 159 --------------MLDMGFQDAIDAIIRQAP----ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQR 220 (460)
T ss_pred --------------HhCcCcHHHHHHHHHhCC----cccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEE
Confidence 444444444444444444 5678999999994 3455544 4444444443322 223344
Q ss_pred EcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCc
Q 010422 229 YTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAP 308 (511)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 308 (511)
+...+..+ ....+..+.....++++||||+|++.++.+++.|.+. ++.+..+||+|++.+|+.+++.
T Consensus 221 ~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~ 287 (460)
T PRK11776 221 FYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRDQVLVR 287 (460)
T ss_pred EEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHH
Confidence 44333322 2333444444455778999999999999999999876 7889999999999999999999
Q ss_pred CCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 309 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 309 f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| .|.||.+++++
T Consensus 288 F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d----------~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~ 349 (460)
T PRK11776 288 FANRSCSVLVATDVAARGLDIKALEAVIN--------YE----------LARDPEVHVHRIGRTGRAGSKGLALSLVAPE 349 (460)
T ss_pred HHcCCCcEEEEecccccccchhcCCeEEE--------ec----------CCCCHhHhhhhcccccCCCCcceEEEEEchh
Confidence 99999999999999999999999999999 77 5889999999999999999 89999999887
Q ss_pred hHhh
Q 010422 388 EFDK 391 (511)
Q Consensus 388 ~~~~ 391 (511)
+...
T Consensus 350 e~~~ 353 (460)
T PRK11776 350 EMQR 353 (460)
T ss_pred HHHH
Confidence 6543
No 20
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-40 Score=307.16 Aligned_cols=306 Identities=20% Similarity=0.284 Sum_probs=235.1
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC-CeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
..-.|+++|+++++.+..|++++..|.||||||-.+.++++++.+.++ ...++++.|+|+++.|+++.+.. .+...|.
T Consensus 80 ~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~-Lg~~igl 158 (476)
T KOG0330|consen 80 GWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEA-LGSGIGL 158 (476)
T ss_pred CcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHH-hccccCe
Confidence 355689999999999999999999999999999777777777766554 45789999999999999987543 3434444
Q ss_pred eeeEEEee--------------cccCChhhhHHHHhhC---cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcccc
Q 010422 90 RVGYSIRF--------------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (511)
Q Consensus 90 ~vg~~~~~--------------~~~~~~~~~i~~~l~~---~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~ 152 (511)
.+...+++ +..+.+..++...+.+ ..+.+++++|+|||
T Consensus 159 r~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA------------------------- 213 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA------------------------- 213 (476)
T ss_pred EEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH-------------------------
Confidence 33322221 1123344455555442 34778999999999
Q ss_pred CCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhh-hCCCCeEEeCCcccc---cc
Q 010422 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEY-FGCAKAVHVQGRQFP---VE 226 (511)
Q Consensus 153 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~-~~~~~~~~~~~~~~~---~~ 226 (511)
|.++|+.|...+..++..++ ...|.+++|||+ +...+..- +.++..+.+...... +.
T Consensus 214 -------------DrlLd~dF~~~ld~ILk~ip----~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lk 276 (476)
T KOG0330|consen 214 -------------DRLLDMDFEEELDYILKVIP----RERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLK 276 (476)
T ss_pred -------------HhhhhhhhHHHHHHHHHhcC----ccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhh
Confidence 57888888888777777777 677999999999 55666533 333334444433322 23
Q ss_pred EEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhc
Q 010422 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 306 (511)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 306 (511)
.+|...+..+... .++++.....+++++|||++...++.++-.|+.. ++...++||.|++..|...+
T Consensus 277 Q~ylfv~~k~K~~----yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~~Rlg~l 343 (476)
T KOG0330|consen 277 QTYLFVPGKDKDT----YLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQSKRLGAL 343 (476)
T ss_pred hheEeccccccch----hHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc---------CcceecccchhhHHHHHHHH
Confidence 4444444332222 2333444455789999999999999999999887 99999999999999999999
Q ss_pred CcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecC
Q 010422 307 APAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (511)
Q Consensus 307 ~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (511)
+.|++|.+.|++|||++++|+|+|.|++||| || .|.+..+|+||+||+||.| +|+++.|++
T Consensus 344 ~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yD----------iP~~skDYIHRvGRtaRaGrsG~~ItlVt 405 (476)
T KOG0330|consen 344 NKFKAGARSILVCTDVASRGLDIPHVDVVVN--------YD----------IPTHSKDYIHRVGRTARAGRSGKAITLVT 405 (476)
T ss_pred HHHhccCCcEEEecchhcccCCCCCceEEEe--------cC----------CCCcHHHHHHHcccccccCCCcceEEEEe
Confidence 9999999999999999999999999999999 99 8999999999999999999 999999999
Q ss_pred hhhHh
Q 010422 386 ENEFD 390 (511)
Q Consensus 386 ~~~~~ 390 (511)
..+.+
T Consensus 406 qyDve 410 (476)
T KOG0330|consen 406 QYDVE 410 (476)
T ss_pred hhhhH
Confidence 85543
No 21
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.9e-39 Score=338.63 Aligned_cols=312 Identities=18% Similarity=0.237 Sum_probs=213.7
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc------cCCCeEEEEeCccHHHHHHHHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF------CRDGKLIGVTQPRRVAAVTVAKRVA 80 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (511)
+.....-.++++|.++++.+.+|++++++||||||||..+.++++.... ...+..++++.|+++++.|+.+.+.
T Consensus 145 l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~ 224 (545)
T PTZ00110 145 LKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCN 224 (545)
T ss_pred HHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHH
Confidence 3334445689999999999999999999999999999554333332211 1125578999999999999988776
Q ss_pred HHhCCccCCeeeEEEee--------------cccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHH
Q 010422 81 EESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (511)
Q Consensus 81 ~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~ 144 (511)
++... .+..+...... +-.+.+..++..++.. ..+.+++++|+||||.
T Consensus 225 ~~~~~-~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~--------------- 288 (545)
T PTZ00110 225 KFGAS-SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR--------------- 288 (545)
T ss_pred HHhcc-cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh---------------
Confidence 65432 22211111111 1112233444444432 3478899999999983
Q ss_pred HHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCC--HHHHHhhh-CCCCe-EEeCC
Q 010422 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEYF-GCAKA-VHVQG 220 (511)
Q Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~--~~~l~~~~-~~~~~-~~~~~ 220 (511)
|++.++...+..++..+. ++.|++++|||++ .+.+++.+ ...++ +.+..
T Consensus 289 -----------------------mld~gf~~~i~~il~~~~----~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~ 341 (545)
T PTZ00110 289 -----------------------MLDMGFEPQIRKIVSQIR----PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGS 341 (545)
T ss_pred -----------------------hhhcchHHHHHHHHHhCC----CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECC
Confidence 334444333333443333 6789999999994 34555444 33222 22221
Q ss_pred cc----ccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 010422 221 RQ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (511)
Q Consensus 221 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~ 296 (511)
.. ..+...+......+.. ..+..++..... ..+++||||++++.|+.+++.|... ++.+..+||+
T Consensus 342 ~~l~~~~~i~q~~~~~~~~~k~-~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ihg~ 410 (545)
T PTZ00110 342 LDLTACHNIKQEVFVVEEHEKR-GKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLD---------GWPALCIHGD 410 (545)
T ss_pred CccccCCCeeEEEEEEechhHH-HHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEECC
Confidence 11 1122122111111111 222222222221 4779999999999999999999865 7788999999
Q ss_pred CCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
+++++|..+++.|++|+.+|||||+++++|||+|+|++||+ || .|.+.++|+||+|||||.|
T Consensus 411 ~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d----------~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 411 KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FD----------FPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred CcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999 88 6899999999999999999
Q ss_pred -CCeEEEecChhhHh
Q 010422 377 -PGKCFRLYPENEFD 390 (511)
Q Consensus 377 -~G~~~~l~~~~~~~ 390 (511)
.|.||.++++++..
T Consensus 473 ~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 473 AKGASYTFLTPDKYR 487 (545)
T ss_pred CCceEEEEECcchHH
Confidence 89999999887654
No 22
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-39 Score=335.38 Aligned_cols=306 Identities=21% Similarity=0.309 Sum_probs=237.4
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc--cCCCeE-EEEeCccHHHHHHHHHHHHHHhCCc
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKL-IGVTQPRRVAAVTVAKRVAEESGVE 86 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~--~~~~~~-i~~~~p~~~l~~~~~~~~~~~~~~~ 86 (511)
...-.++++|..+++.+..|+++++.|+||||||..+.+.+++... ...... ++++.|+|+++.|+.+.+..+....
T Consensus 47 ~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 47 LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 4455689999999999999999999999999999766666666643 222222 8999999999999999876655432
Q ss_pred cCCeeeEEEee--------------cccCChhhhHHHHhhCc--CCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcc
Q 010422 87 LGQRVGYSIRF--------------DDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (511)
Q Consensus 87 ~~~~vg~~~~~--------------~~~~~~~~~i~~~l~~~--~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~ 150 (511)
.+..+...... +..+.++.++..++... .+.++.++|+|||
T Consensus 127 ~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA----------------------- 183 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA----------------------- 183 (513)
T ss_pred CCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH-----------------------
Confidence 12222222221 11223334444455443 5788999999999
Q ss_pred ccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH--HHH-hhhCCCCeEEeCCcc-----
Q 010422 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQGRQ----- 222 (511)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~l~-~~~~~~~~~~~~~~~----- 222 (511)
|.|+|++|...++.++..++ .+.|++++|||++.. .++ .++.++..+.+....
T Consensus 184 ---------------DrmLd~Gf~~~i~~I~~~~p----~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~ 244 (513)
T COG0513 184 ---------------DRMLDMGFIDDIEKILKALP----PDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTL 244 (513)
T ss_pred ---------------hhhhcCCCHHHHHHHHHhCC----cccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccc
Confidence 68999999999999999998 578999999999553 233 455655555555221
Q ss_pred ccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 010422 223 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (511)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r 302 (511)
..+...|......+ .....+..+......+++||||+|+..++.++..|... ++.+..+||+|++++|
T Consensus 245 ~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R 312 (513)
T COG0513 245 KKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDLPQEER 312 (513)
T ss_pred cCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCCCHHHH
Confidence 23444444433322 45555666666666678999999999999999999887 8999999999999999
Q ss_pred HhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEE
Q 010422 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (511)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~ 381 (511)
.++++.|++|..+||||||++++|+|||+|++||| || .|.+.++|+||+||+||.| .|.++
T Consensus 313 ~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD----------~p~~~e~yvHRiGRTgRaG~~G~ai 374 (513)
T COG0513 313 DRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YD----------LPLDPEDYVHRIGRTGRAGRKGVAI 374 (513)
T ss_pred HHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------cc----------CCCCHHHheeccCccccCCCCCeEE
Confidence 99999999999999999999999999999999999 99 6999999999999999999 99999
Q ss_pred EecChh
Q 010422 382 RLYPEN 387 (511)
Q Consensus 382 ~l~~~~ 387 (511)
.+++++
T Consensus 375 ~fv~~~ 380 (513)
T COG0513 375 SFVTEE 380 (513)
T ss_pred EEeCcH
Confidence 999864
No 23
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.9e-40 Score=317.57 Aligned_cols=431 Identities=18% Similarity=0.220 Sum_probs=294.7
Q ss_pred hhHHHhhccCCCHHHHHHHHHH-HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~-l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
.++++....-.+.|+|.-.+++ +.+|++.+|+.+|+||||.+..++-....+.. +.+.+++.|.-++++|-...+...
T Consensus 206 k~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-g~KmlfLvPLVALANQKy~dF~~r 284 (830)
T COG1202 206 KRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-GKKMLFLVPLVALANQKYEDFKER 284 (830)
T ss_pred HHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-CCeEEEEehhHHhhcchHHHHHHH
Confidence 3445555555677888877776 88999999999999999977776655555443 446778889999998888776654
Q ss_pred hCCccCCeeeEEEee---c-------cc--------CChhhhHHHHhhC-cCCCCCCchhHhhhhhhhhhhHHHHHHHHH
Q 010422 83 SGVELGQRVGYSIRF---D-------DR--------TSTSTRIKEALLD-PYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (511)
Q Consensus 83 ~~~~~~~~vg~~~~~---~-------~~--------~~~~~~i~~~l~~-~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~ 143 (511)
.. .++..+...+.. . .. +.+..-+..++.. ..+.+++.+||||+|
T Consensus 285 Ys-~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiH--------------- 348 (830)
T COG1202 285 YS-KLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIH--------------- 348 (830)
T ss_pred hh-cccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeee---------------
Confidence 42 333333222110 0 01 1122333445544 678999999999999
Q ss_pred HHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCcc
Q 010422 144 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQ 222 (511)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~ 222 (511)
...+..+|+++|-++.+.+.- . ++.|+|.+|||+ |++.+++.++ .+.+..+.++
T Consensus 349 -----------tL~deERG~RLdGLI~RLr~l---------~----~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RP 403 (830)
T COG1202 349 -----------TLEDEERGPRLDGLIGRLRYL---------F----PGAQFIYLSATVGNPEELAKKLG-AKLVLYDERP 403 (830)
T ss_pred -----------eccchhcccchhhHHHHHHHh---------C----CCCeEEEEEeecCChHHHHHHhC-CeeEeecCCC
Confidence 345556666666665553221 1 788999999999 9999999997 5577788888
Q ss_pred ccccEEEcCCCCCchHHHHHHHHHH-----HhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCC
Q 010422 223 FPVEILYTLYPEPDYLDATLITIFQ-----VHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (511)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l 297 (511)
.|++-+.....+..-....+..+.. .....-.|++|||++||+.|++++..|... ++.+.+||+||
T Consensus 404 VplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL 474 (830)
T COG1202 404 VPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAGL 474 (830)
T ss_pred CChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCCC
Confidence 8888766544432222222222222 122223789999999999999999999886 89999999999
Q ss_pred CHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-
Q 010422 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 376 (511)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~- 376 (511)
+..+|+.++..|.++.+.++|+|.+++.|||+|+-.+|+.+= .+...|.|+.+|.||.|||||++
T Consensus 475 ~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL--------------aMG~~WLs~~EF~QM~GRAGRp~y 540 (830)
T COG1202 475 PYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL--------------AMGIEWLSVREFQQMLGRAGRPDY 540 (830)
T ss_pred cHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH--------------HcccccCCHHHHHHHhcccCCCCc
Confidence 999999999999999999999999999999999877666411 23346999999999999999999
Q ss_pred --CCeEEEecChh-hHhhccCCC-----------CCc--ccccC---ccHHHHHHHHcCCCCCCc-ccCCCC---CCHHH
Q 010422 377 --PGKCFRLYPEN-EFDKLEDST-----------KPE--IKRCN---LSNVILQLKALGVDDIIG-FDFMEK---PSRAS 433 (511)
Q Consensus 377 --~G~~~~l~~~~-~~~~~~~~~-----------~pe--i~~~~---l~~~~L~~~~~~~~~~~~-~~~~~~---p~~~~ 433 (511)
.|++|.++.+. .|+.-.+.+ .|| +..-+ -.+-+|. ..++.+... ..=+.+ -..-.
T Consensus 541 HdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g~~~~ 618 (830)
T COG1202 541 HDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLGAAFD 618 (830)
T ss_pred ccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhccccCC
Confidence 79999998432 333311111 111 11111 1111222 222221111 000000 01124
Q ss_pred HHHHHHHHHHcCCcCCCC---CCCHHHHHHHccCCCCHHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCCh
Q 010422 434 IIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSP 503 (511)
Q Consensus 434 l~~al~~L~~~g~l~~~~---~~T~~lG~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~i~a~l~~~~~~~~~~ 503 (511)
.+.++..|++.|+++.+| ++|+ .|++++...+.|..|..|..++ ....+|.=+++.+..+++.++.+.
T Consensus 619 ~~k~l~~Lee~g~i~~~G~~v~~T~-yGrava~~Fl~p~~a~~Ir~~v-~~~~~pl~i~~~l~pfE~ayls~~ 689 (830)
T COG1202 619 PKKALSKLEEYGMIKKKGNIVRPTP-YGRAVAMSFLGPSEAEFIREGV-LASMDPLRIAAELEPFENAYLSGF 689 (830)
T ss_pred HHHHHHHHHhcCCeeccCCEeeecc-ccceeEEeecCchHHHHHHHhh-hccCChHhHhhccccccccccChH
Confidence 578899999999999776 5897 9999999999999999999886 444556555555555556665544
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-39 Score=330.96 Aligned_cols=313 Identities=18% Similarity=0.205 Sum_probs=216.8
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc--------CCCeEEEEeCccHHHHHHHHH
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--------RDGKLIGVTQPRRVAAVTVAK 77 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~--------~~~~~i~~~~p~~~l~~~~~~ 77 (511)
.++....-.++++|+++++.+.+|++++++||||||||..+..+++..... ..+.+++++.|+++++.|+.+
T Consensus 22 ~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~ 101 (423)
T PRK04837 22 ALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHA 101 (423)
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHH
Confidence 334444556899999999999999999999999999996655555433221 124579999999999999988
Q ss_pred HHHHHhCCccCCeeeEEEeec--------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHH
Q 010422 78 RVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (511)
Q Consensus 78 ~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l 141 (511)
.+..... ..+..++...... -.+.+..++..++.. ..+.+++++|+||||+.
T Consensus 102 ~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l----------- 169 (423)
T PRK04837 102 DAEPLAQ-ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRM----------- 169 (423)
T ss_pred HHHHHhc-cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHH-----------
Confidence 7654432 2233343322211 112233344444433 34778999999999943
Q ss_pred HHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH--HHH-hhhCCCCeEEe
Q 010422 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHV 218 (511)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~l~-~~~~~~~~~~~ 218 (511)
++.++...+..++..++.. ...+.+++|||++.. .+. .++.++..+.+
T Consensus 170 ---------------------------~~~~f~~~i~~i~~~~~~~--~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v 220 (423)
T PRK04837 170 ---------------------------FDLGFIKDIRWLFRRMPPA--NQRLNMLFSATLSYRVRELAFEHMNNPEYVEV 220 (423)
T ss_pred ---------------------------hhcccHHHHHHHHHhCCCc--cceeEEEEeccCCHHHHHHHHHHCCCCEEEEE
Confidence 2222222222222222211 234578999999443 333 45555544444
Q ss_pred CCccc---cccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccC
Q 010422 219 QGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS 295 (511)
Q Consensus 219 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~ 295 (511)
..... .+...+.... .......+..+......+++||||++++.|+.+++.|.+. ++.+..+||
T Consensus 221 ~~~~~~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~lhg 287 (423)
T PRK04837 221 EPEQKTGHRIKEELFYPS----NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLLTG 287 (423)
T ss_pred cCCCcCCCceeEEEEeCC----HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEecC
Confidence 32221 1111111111 1223334444444445788999999999999999999875 788999999
Q ss_pred CCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCC
Q 010422 296 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (511)
Q Consensus 296 ~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~ 375 (511)
+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.
T Consensus 288 ~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d----------~P~s~~~yiqR~GR~gR~ 349 (423)
T PRK04837 288 DVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YD----------LPDDCEDYVHRIGRTGRA 349 (423)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eC----------CCCchhheEeccccccCC
Confidence 999999999999999999999999999999999999999999 88 588999999999999999
Q ss_pred C-CCeEEEecChhhHh
Q 010422 376 G-PGKCFRLYPENEFD 390 (511)
Q Consensus 376 ~-~G~~~~l~~~~~~~ 390 (511)
| .|.++.++++++..
T Consensus 350 G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 350 GASGHSISLACEEYAL 365 (423)
T ss_pred CCCeeEEEEeCHHHHH
Confidence 9 99999999987543
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.6e-39 Score=335.60 Aligned_cols=311 Identities=18% Similarity=0.229 Sum_probs=218.7
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc--------CCCeEEEEeCccHHHHHHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--------RDGKLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~--------~~~~~i~~~~p~~~l~~~~~~~ 78 (511)
++....-.++++|.++++.+.+|++++++||||||||..+.+++++.... ..+.+++++.|+++++.|+.+.
T Consensus 24 L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~ 103 (572)
T PRK04537 24 LESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKD 103 (572)
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHH
Confidence 33444556899999999999999999999999999997666666554321 1135799999999999999988
Q ss_pred HHHHhCCccCCeeeEEEee--------------cccCChhhhHHHHhhC---cCCCCCCchhHhhhhhhhhhhHHHHHHH
Q 010422 79 VAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (511)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~l~~---~~l~~~~~iIiDE~H~r~~~~~~ll~~l 141 (511)
+.++.. ..+..++..... +-.+.+..++..++.. ..+.+++++||||+|..
T Consensus 104 ~~~l~~-~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~l----------- 171 (572)
T PRK04537 104 AVKFGA-DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRM----------- 171 (572)
T ss_pred HHHHhc-cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHH-----------
Confidence 665432 333334332221 1112233344444432 23677899999999943
Q ss_pred HHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH--H-HHhhhCCCCeEEe
Q 010422 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--G-FSEYFGCAKAVHV 218 (511)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~-l~~~~~~~~~~~~ 218 (511)
++.++...+..++..++.. .+.|+++||||++.. . ...++.....+.+
T Consensus 172 ---------------------------ld~gf~~~i~~il~~lp~~--~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v 222 (572)
T PRK04537 172 ---------------------------FDLGFIKDIRFLLRRMPER--GTRQTLLFSATLSHRVLELAYEHMNEPEKLVV 222 (572)
T ss_pred ---------------------------hhcchHHHHHHHHHhcccc--cCceEEEEeCCccHHHHHHHHHHhcCCcEEEe
Confidence 2222222222223333211 356899999999543 2 2355554434433
Q ss_pred CCcccc---ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccC
Q 010422 219 QGRQFP---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS 295 (511)
Q Consensus 219 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~ 295 (511)
...... +...+.... .......+..+.......++||||+|++.++.+++.|.+. ++.+..+||
T Consensus 223 ~~~~~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~lhg 289 (572)
T PRK04537 223 ETETITAARVRQRIYFPA----DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGVLSG 289 (572)
T ss_pred ccccccccceeEEEEecC----HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEeC
Confidence 332211 111221111 1223334445555556788999999999999999999876 788999999
Q ss_pred CCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCC
Q 010422 296 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (511)
Q Consensus 296 ~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~ 375 (511)
+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.
T Consensus 290 ~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd----------~P~s~~~yvqRiGRaGR~ 351 (572)
T PRK04537 290 DVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YD----------LPFDAEDYVHRIGRTARL 351 (572)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cC----------CCCCHHHHhhhhcccccC
Confidence 999999999999999999999999999999999999999999 87 689999999999999999
Q ss_pred C-CCeEEEecChhhH
Q 010422 376 G-PGKCFRLYPENEF 389 (511)
Q Consensus 376 ~-~G~~~~l~~~~~~ 389 (511)
| .|.|+.++.+.+.
T Consensus 352 G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 352 GEEGDAISFACERYA 366 (572)
T ss_pred CCCceEEEEecHHHH
Confidence 9 8999999987654
No 26
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.6e-39 Score=330.26 Aligned_cols=311 Identities=19% Similarity=0.234 Sum_probs=215.2
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-------CCeEEEEeCccHHHHHHHHHH
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-------DGKLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-------~~~~i~~~~p~~~l~~~~~~~ 78 (511)
.+.....-.++++|.++++.+.+|++++++||||||||..+.++++...... ...+++++.|+++++.|+.+.
T Consensus 15 ~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 94 (456)
T PRK10590 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGEN 94 (456)
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHH
Confidence 3334445578999999999999999999999999999966666555443211 123689999999999999988
Q ss_pred HHHHhCCccCCeeeEEEe--------------ecccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHH
Q 010422 79 VAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (511)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~--------------~~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~ 142 (511)
+..+... .+..+..... .+-.+.+..++..++.. ..+++++++|+||||..
T Consensus 95 ~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l------------ 161 (456)
T PRK10590 95 VRDYSKY-LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM------------ 161 (456)
T ss_pred HHHHhcc-CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH------------
Confidence 7765432 1221111111 01112233333333322 34788999999999942
Q ss_pred HHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHHhh-hCCCCeEEeC
Q 010422 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEY-FGCAKAVHVQ 219 (511)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~~~-~~~~~~~~~~ 219 (511)
++.++...+..++..++ ...|++++|||++. ..+..+ +.+...+.+.
T Consensus 162 --------------------------l~~~~~~~i~~il~~l~----~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 211 (456)
T PRK10590 162 --------------------------LDMGFIHDIRRVLAKLP----AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVA 211 (456)
T ss_pred --------------------------hccccHHHHHHHHHhCC----ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEe
Confidence 22222222222222222 55689999999943 455544 4444344433
Q ss_pred Cccc---cccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 010422 220 GRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (511)
Q Consensus 220 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~ 296 (511)
.+.. .+...+..... ......+..+.......++||||+++++++.+++.|.+. ++.+..+||+
T Consensus 212 ~~~~~~~~i~~~~~~~~~----~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~ 278 (456)
T PRK10590 212 RRNTASEQVTQHVHFVDK----KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIHGN 278 (456)
T ss_pred cccccccceeEEEEEcCH----HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEECC
Confidence 2221 11222221111 111222333344445678999999999999999999875 7889999999
Q ss_pred CCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
+++++|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 279 ~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~----------~P~~~~~yvqR~GRaGR~g 340 (456)
T PRK10590 279 KSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YE----------LPNVPEDYVHRIGRTGRAA 340 (456)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eC----------CCCCHHHhhhhccccccCC
Confidence 99999999999999999999999999999999999999999 77 6899999999999999999
Q ss_pred -CCeEEEecChhhHh
Q 010422 377 -PGKCFRLYPENEFD 390 (511)
Q Consensus 377 -~G~~~~l~~~~~~~ 390 (511)
.|.++.++..++..
T Consensus 341 ~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 341 ATGEALSLVCVDEHK 355 (456)
T ss_pred CCeeEEEEecHHHHH
Confidence 89999999877654
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.1e-39 Score=335.17 Aligned_cols=307 Identities=18% Similarity=0.234 Sum_probs=212.2
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc--------cCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--------CRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~--------~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
.....++++|.++++.+.+|++++++||||||||..+.++++.... ...+..++++.|+++++.|+.+.+..
T Consensus 139 ~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 139 AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999999999999555444443221 12356799999999999988776554
Q ss_pred HhCCccCCeeeEEEeec--------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHH
Q 010422 82 ESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (511)
Q Consensus 82 ~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~ 145 (511)
+.. ..+..+....... -.+.+..++..++.. ..+.+++++|+||||.
T Consensus 219 l~~-~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~---------------- 281 (518)
T PLN00206 219 LGK-GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDC---------------- 281 (518)
T ss_pred HhC-CCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHH----------------
Confidence 432 2222221111111 112233344444433 3578899999999994
Q ss_pred HhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhhhCCCCe-EEeCCcc
Q 010422 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKA-VHVQGRQ 222 (511)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~~~~~~~-~~~~~~~ 222 (511)
|++.++...+..++..+ ++.|++++|||+ +.+.++.++...+. +.+....
T Consensus 282 ----------------------ml~~gf~~~i~~i~~~l-----~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~ 334 (518)
T PLN00206 282 ----------------------MLERGFRDQVMQIFQAL-----SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN 334 (518)
T ss_pred ----------------------HhhcchHHHHHHHHHhC-----CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC
Confidence 33333333333333332 457999999999 44567766654433 3332222
Q ss_pred cc---ccEEEcCCCCCchHHHHHHHHHHHhhc--CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCC
Q 010422 223 FP---VEILYTLYPEPDYLDATLITIFQVHLD--EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (511)
Q Consensus 223 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l 297 (511)
.+ +...+......+... .+..+... ...+++||||+++..++.+++.|... .++.+..+||++
T Consensus 335 ~~~~~v~q~~~~~~~~~k~~----~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~ 402 (518)
T PLN00206 335 RPNKAVKQLAIWVETKQKKQ----KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEK 402 (518)
T ss_pred CCCcceeEEEEeccchhHHH----HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCC
Confidence 11 122222222222222 22222221 22468999999999999999988753 167889999999
Q ss_pred CHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-
Q 010422 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 376 (511)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~- 376 (511)
++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 403 ~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d----------~P~s~~~yihRiGRaGR~g~ 464 (518)
T PLN00206 403 SMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FD----------MPNTIKEYIHQIGRASRMGE 464 (518)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eC----------CCCCHHHHHHhccccccCCC
Confidence 9999999999999999999999999999999999999999 88 6899999999999999999
Q ss_pred CCeEEEecChhhHh
Q 010422 377 PGKCFRLYPENEFD 390 (511)
Q Consensus 377 ~G~~~~l~~~~~~~ 390 (511)
.|.++.+++.++..
T Consensus 465 ~G~ai~f~~~~~~~ 478 (518)
T PLN00206 465 KGTAIVFVNEEDRN 478 (518)
T ss_pred CeEEEEEEchhHHH
Confidence 89999999887654
No 28
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-39 Score=286.77 Aligned_cols=310 Identities=15% Similarity=0.264 Sum_probs=235.5
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc-cCCCeEEEEeCccHHHHHHHHHHHHHHh---CCccCC
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEES---GVELGQ 89 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~---~~~~~~ 89 (511)
.|..+|+.++..+.+|++++..+..|+|||..+..-++...- .....+++++.|+|+++.|+.+.+...- +.++..
T Consensus 49 kPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ha 128 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHA 128 (400)
T ss_pred CchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEE
Confidence 578899999999999999999999999999554444443322 2224679999999999999888654332 222222
Q ss_pred eeeEEE----------eecccCChhhhHHHHhhCcC--CCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCC
Q 010422 90 RVGYSI----------RFDDRTSTSTRIKEALLDPY--LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 157 (511)
Q Consensus 90 ~vg~~~----------~~~~~~~~~~~i~~~l~~~~--l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~ 157 (511)
.+|... +.+....++.++..++.... -..+.++|+||+
T Consensus 129 cigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa------------------------------ 178 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA------------------------------ 178 (400)
T ss_pred EecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH------------------------------
Confidence 222110 00111223344444544333 457899999999
Q ss_pred CCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHH--h-hhCCCCeEEeCCccccccEEEcCCCC
Q 010422 158 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS--E-YFGCAKAVHVQGRQFPVEILYTLYPE 234 (511)
Q Consensus 158 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (511)
|.|++.+++.++.++++.++ ++.|++++|||++.+.+. + |..++-.+.+.....+.+-.......
T Consensus 179 --------DemL~kgfk~Qiydiyr~lp----~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ 246 (400)
T KOG0328|consen 179 --------DEMLNKGFKEQIYDIYRYLP----PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVA 246 (400)
T ss_pred --------HHHHHhhHHHHHHHHHHhCC----CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheee
Confidence 57889999999999999998 889999999999666543 4 44444444444444444322222222
Q ss_pred CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe
Q 010422 235 PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR 314 (511)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~ 314 (511)
.+..+..+.++++++....-.+.+|||||++.++++.+.+++. .+.+..+||+|++++|+++++.|++|+.
T Consensus 247 ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~dFRsg~S 317 (400)
T KOG0328|consen 247 VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMNDFRSGKS 317 (400)
T ss_pred echhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHHhhcCCc
Confidence 3344456677777777766788999999999999999999887 8999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhHhhc
Q 010422 315 KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFDKL 392 (511)
Q Consensus 315 ~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~~ 392 (511)
+|+++||+-++|+|+|.|..||| || .|...+.|+||+||+||.| .|.++.++..++...+
T Consensus 318 rvLitTDVwaRGiDv~qVslviN--------YD----------LP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~l 378 (400)
T KOG0328|consen 318 RVLITTDVWARGIDVQQVSLVIN--------YD----------LPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRIL 378 (400)
T ss_pred eEEEEechhhccCCcceeEEEEe--------cC----------CCccHHHHhhhhccccccCCcceEEEEecHHHHHHH
Confidence 99999999999999999999999 99 6899999999999999999 9999999998877653
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2e-38 Score=325.57 Aligned_cols=314 Identities=17% Similarity=0.209 Sum_probs=219.6
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc-----cCCCeEEEEeCccHHHHHHHHHHH
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKRV 79 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~~ 79 (511)
+.++......++++|++++..+.+|++++++||||||||..+.++++.... ..+..+++++.|+++++.|+.+.+
T Consensus 14 ~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~ 93 (434)
T PRK11192 14 EALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQA 93 (434)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHH
Confidence 334445556689999999999999999999999999999766555544322 112457999999999999998876
Q ss_pred HHHhCCccCCeeeEEEeec--------------ccCChhhhHHHHhhCc--CCCCCCchhHhhhhhhhhhhHHHHHHHHH
Q 010422 80 AEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (511)
Q Consensus 80 ~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~l~~~--~l~~~~~iIiDE~H~r~~~~~~ll~~l~~ 143 (511)
..+.. ..+..++...... -.+.+..++...+... .+.+++++|+||||.
T Consensus 94 ~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~-------------- 158 (434)
T PRK11192 94 RELAK-HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR-------------- 158 (434)
T ss_pred HHHHc-cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH--------------
Confidence 65542 2233333222111 1112233333333322 367899999999994
Q ss_pred HHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH---HHHHhhhCCCC-eEEeC
Q 010422 144 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAK-AVHVQ 219 (511)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~---~~l~~~~~~~~-~~~~~ 219 (511)
|++.++...+..+...+. ...|+++||||++. ..+.+++...+ .+...
T Consensus 159 ------------------------~l~~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~ 210 (434)
T PRK11192 159 ------------------------MLDMGFAQDIETIAAETR----WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAE 210 (434)
T ss_pred ------------------------HhCCCcHHHHHHHHHhCc----cccEEEEEEeecCHHHHHHHHHHHccCCEEEEec
Confidence 333333333222222222 45689999999954 34555554333 22222
Q ss_pred Cccc---cccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 010422 220 GRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (511)
Q Consensus 220 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~ 296 (511)
.... .+...+.... ........+..+......+++||||+++++++.++..|.+. ++.+..+||+
T Consensus 211 ~~~~~~~~i~~~~~~~~---~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~g~ 278 (434)
T PRK11192 211 PSRRERKKIHQWYYRAD---DLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLEGE 278 (434)
T ss_pred CCcccccCceEEEEEeC---CHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEecCC
Confidence 2111 1122222111 12333444455555545788999999999999999999875 7889999999
Q ss_pred CCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+...|+||+|||||.|
T Consensus 279 ~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d----------~p~s~~~yiqr~GR~gR~g 340 (434)
T PRK11192 279 MVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FD----------MPRSADTYLHRIGRTGRAG 340 (434)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------EC----------CCCCHHHHhhcccccccCC
Confidence 99999999999999999999999999999999999999999 87 5899999999999999999
Q ss_pred -CCeEEEecChhhHhh
Q 010422 377 -PGKCFRLYPENEFDK 391 (511)
Q Consensus 377 -~G~~~~l~~~~~~~~ 391 (511)
.|.++.+++..++..
T Consensus 341 ~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 341 RKGTAISLVEAHDHLL 356 (434)
T ss_pred CCceEEEEecHHHHHH
Confidence 899999998877654
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.8e-38 Score=334.11 Aligned_cols=311 Identities=19% Similarity=0.233 Sum_probs=223.3
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.++....-.++++|.+++..+.+|++++++||||||||..+.++++...... .+.+++++.|+++++.|+++.+..+..
T Consensus 20 al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~ 99 (629)
T PRK11634 20 ALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSK 99 (629)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHh
Confidence 3334445568999999999999999999999999999977766666543222 345789999999999999988776654
Q ss_pred CccCCeeeEEEee--------------cccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 85 VELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 85 ~~~~~~vg~~~~~--------------~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
...+..+...... +-.+.+..++...+.. ..+++++++|+||||+
T Consensus 100 ~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~------------------- 160 (629)
T PRK11634 100 HMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE------------------- 160 (629)
T ss_pred hcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-------------------
Confidence 3223332211111 1112233344443333 3478899999999994
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHH-hhhCCCCeEEeCCccc--
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGRQF-- 223 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~-~~~~~~~~~~~~~~~~-- 223 (511)
|++.++...++.++..++ ...|+++||||++. ..+. .|+.++..+.+.....
T Consensus 161 -------------------ml~~gf~~di~~Il~~lp----~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~ 217 (629)
T PRK11634 161 -------------------MLRMGFIEDVETIMAQIP----EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR 217 (629)
T ss_pred -------------------HhhcccHHHHHHHHHhCC----CCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccC
Confidence 333333333344444443 56789999999943 3343 5666555555543321
Q ss_pred -cccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 010422 224 -PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (511)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r 302 (511)
.+...|......+ ....+..+.......++||||+|++.++.++..|.+. ++.+..+||+|++.+|
T Consensus 218 ~~i~q~~~~v~~~~----k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~~R 284 (629)
T PRK11634 218 PDISQSYWTVWGMR----KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQALR 284 (629)
T ss_pred CceEEEEEEechhh----HHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHHHH
Confidence 1222222222211 2233444444455678999999999999999999875 7889999999999999
Q ss_pred HhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEE
Q 010422 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (511)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~ 381 (511)
.++++.|++|+.+|||||+++++|||+|+|++||+ || .|.+..+|+||+|||||.| .|.++
T Consensus 285 ~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~--------~d----------~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVN--------YD----------IPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred HHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhccccCCCCcceEE
Confidence 99999999999999999999999999999999999 88 6899999999999999999 79999
Q ss_pred EecChhhH
Q 010422 382 RLYPENEF 389 (511)
Q Consensus 382 ~l~~~~~~ 389 (511)
.+++..+.
T Consensus 347 ~~v~~~e~ 354 (629)
T PRK11634 347 LFVENRER 354 (629)
T ss_pred EEechHHH
Confidence 99987654
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.5e-38 Score=337.38 Aligned_cols=317 Identities=18% Similarity=0.135 Sum_probs=215.4
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
.++..+.-.++++|.++++.+.+|+++++++|||||||..+.+++++.....++.+++++.|+++++.++.+.+.++..
T Consensus 28 ~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~- 106 (742)
T TIGR03817 28 ALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTL- 106 (742)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhcc-
Confidence 3444444579999999999999999999999999999977766766655444566899999999999999998776541
Q ss_pred ccCCeeeEEEeecccCCh----------------hhhHHH-HhhC-----cCCCCCCchhHhhhhhhhh-hhHHHHHHHH
Q 010422 86 ELGQRVGYSIRFDDRTST----------------STRIKE-ALLD-----PYLSRYSAIIVDEAHERTV-HTDVLLGLLK 142 (511)
Q Consensus 86 ~~~~~vg~~~~~~~~~~~----------------~~~i~~-~l~~-----~~l~~~~~iIiDE~H~r~~-~~~~ll~~l~ 142 (511)
.+..++.. +...+. ...+.. ++.. ..+++++++|+||+|.... ....+..+++
T Consensus 107 -~~i~v~~~---~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~ 182 (742)
T TIGR03817 107 -RGVRPATY---DGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLR 182 (742)
T ss_pred -CCeEEEEE---eCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHH
Confidence 12222211 112111 111111 1111 2377899999999996321 1111111222
Q ss_pred HHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCc
Q 010422 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGR 221 (511)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~ 221 (511)
++... ......++|++++|||+ |+..+++++.+.+...+...
T Consensus 183 rL~ri-------------------------------------~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~ 225 (742)
T TIGR03817 183 RLRRL-------------------------------------CARYGASPVFVLASATTADPAAAASRLIGAPVVAVTED 225 (742)
T ss_pred HHHHH-------------------------------------HHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCC
Confidence 21110 00111567999999999 77777766655555444432
Q ss_pred ccc---ccEEEcCCCC------------CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 010422 222 QFP---VEILYTLYPE------------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASR 286 (511)
Q Consensus 222 ~~~---~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~ 286 (511)
..| ....+...+. ..........+..... .+.++||||+|++.++.++..+.+.+..... ..
T Consensus 226 ~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~-~l 302 (742)
T TIGR03817 226 GSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDP-DL 302 (742)
T ss_pred CCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhcc-cc
Confidence 222 1111111110 0111122223333332 2678999999999999999998876543211 11
Q ss_pred CeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHH
Q 010422 287 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (511)
Q Consensus 287 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~ 366 (511)
+..+..|||++++++|.++++.|++|++++|||||++|+|||||++++||+ || .|.+.++|+
T Consensus 303 ~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~----------~P~s~~~y~ 364 (742)
T TIGR03817 303 AERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI--------AG----------FPGTRASLW 364 (742)
T ss_pred ccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE--------eC----------CCCCHHHHH
Confidence 456889999999999999999999999999999999999999999999999 66 589999999
Q ss_pred HhccccCCCC-CCeEEEecC
Q 010422 367 QRSGRAGREG-PGKCFRLYP 385 (511)
Q Consensus 367 Qr~GRaGR~~-~G~~~~l~~ 385 (511)
||+|||||.| .|.++.+.+
T Consensus 365 qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 365 QQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred HhccccCCCCCCcEEEEEeC
Confidence 9999999999 899998886
No 32
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.8e-38 Score=323.47 Aligned_cols=307 Identities=15% Similarity=0.250 Sum_probs=212.3
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-CCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
.-.++++|.+++..+.+|++++++||||||||..+.++++..... ..+.+++++.|+++++.|+.+.+..... .....
T Consensus 48 ~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~~~ 126 (401)
T PTZ00424 48 FEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGD-YLKVR 126 (401)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhh-hcCce
Confidence 335899999999999999999999999999997766666554322 2355789999999999998876554432 22222
Q ss_pred eeEEEee--------------cccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCC
Q 010422 91 VGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (511)
Q Consensus 91 vg~~~~~--------------~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~ 154 (511)
++..... +-.+.+..++...+.. ..+.+++++|+||+|...... +...+..
T Consensus 127 ~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~--~~~~~~~----------- 193 (401)
T PTZ00424 127 CHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG--FKGQIYD----------- 193 (401)
T ss_pred EEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc--hHHHHHH-----------
Confidence 2111110 0111223333333322 347889999999999532211 1111111
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH--HHH-hhhCCCCeEEeCCccc---cccEE
Q 010422 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQGRQF---PVEIL 228 (511)
Q Consensus 155 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~l~-~~~~~~~~~~~~~~~~---~~~~~ 228 (511)
++.++. ++.|++++|||++.+ .+. .++.....+.+..... .+...
T Consensus 194 -------------------------i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (401)
T PTZ00424 194 -------------------------VFKKLP----PDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQF 244 (401)
T ss_pred -------------------------HHhhCC----CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEE
Confidence 111111 678999999999443 233 4444433333332221 12222
Q ss_pred EcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCc
Q 010422 229 YTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAP 308 (511)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 308 (511)
+.......+ ....+..........++||||+|++.++.+++.+.+. ++.+..+||++++++|..+++.
T Consensus 245 ~~~~~~~~~---~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~ 312 (401)
T PTZ00424 245 YVAVEKEEW---KFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMRE 312 (401)
T ss_pred EEecChHHH---HHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHH
Confidence 222222222 2233344444445678999999999999999999775 7789999999999999999999
Q ss_pred CCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 309 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 309 f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
|++|+++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| .|.|+.+++++
T Consensus 313 f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~----------~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 374 (401)
T PTZ00424 313 FRSGSTRVLITTDLLARGIDVQQVSLVIN--------YD----------LPASPENYIHRIGRSGRFGRKGVAINFVTPD 374 (401)
T ss_pred HHcCCCCEEEEcccccCCcCcccCCEEEE--------EC----------CCCCHHHEeecccccccCCCCceEEEEEcHH
Confidence 99999999999999999999999999999 77 5889999999999999999 99999999988
Q ss_pred hHhh
Q 010422 388 EFDK 391 (511)
Q Consensus 388 ~~~~ 391 (511)
+.+.
T Consensus 375 ~~~~ 378 (401)
T PTZ00424 375 DIEQ 378 (401)
T ss_pred HHHH
Confidence 7654
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.6e-38 Score=326.44 Aligned_cols=311 Identities=17% Similarity=0.249 Sum_probs=213.0
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC--------CCeEEEEeCccHHHHHHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR--------DGKLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~--------~~~~i~~~~p~~~l~~~~~~~ 78 (511)
+...+.-.++++|.+++..+.+|+++++++|||||||..+.+.++...... +..+++++.|+++++.|+.+.
T Consensus 102 l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~ 181 (475)
T PRK01297 102 IHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKD 181 (475)
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHH
Confidence 333444458999999999999999999999999999966666655443322 135789999999999999887
Q ss_pred HHHHhCCccCCeeeEEEee---------------cccCChhhhHHHHhh--CcCCCCCCchhHhhhhhhhhhhHHHHHHH
Q 010422 79 VAEESGVELGQRVGYSIRF---------------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (511)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~~---------------~~~~~~~~~i~~~l~--~~~l~~~~~iIiDE~H~r~~~~~~ll~~l 141 (511)
+..... ..+..+...... +-.+.+..++..+.. ...+++++++||||+|..... .+...+
T Consensus 182 ~~~l~~-~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~--~~~~~l 258 (475)
T PRK01297 182 AAALTK-YTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDM--GFIPQV 258 (475)
T ss_pred HHHhhc-cCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhc--ccHHHH
Confidence 765542 222222211110 001122233333332 245788999999999953211 111112
Q ss_pred HHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHH-hhhCCCCeEEe
Q 010422 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHV 218 (511)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~-~~~~~~~~~~~ 218 (511)
+++ +..+... .+.+++++|||+ +...+. .|+.+...+.+
T Consensus 259 ~~i------------------------------------~~~~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 300 (475)
T PRK01297 259 RQI------------------------------------IRQTPRK--EERQTLLFSATFTDDVMNLAKQWTTDPAIVEI 300 (475)
T ss_pred HHH------------------------------------HHhCCCC--CCceEEEEEeecCHHHHHHHHHhccCCEEEEe
Confidence 222 1122111 356899999998 444444 45444434433
Q ss_pred CCccc---cccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccC
Q 010422 219 QGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS 295 (511)
Q Consensus 219 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~ 295 (511)
..... .+..++......+ ....+..+.......++||||+++++++.+++.|.+. ++.+..+||
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~----k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~~~g 367 (475)
T PRK01297 301 EPENVASDTVEQHVYAVAGSD----KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQLSG 367 (475)
T ss_pred ccCcCCCCcccEEEEEecchh----HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEEC
Confidence 32221 1222222222222 2223333444445678999999999999999999765 778899999
Q ss_pred CCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCC
Q 010422 296 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (511)
Q Consensus 296 ~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~ 375 (511)
+++.++|.++++.|++|+++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.
T Consensus 368 ~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~----------~P~s~~~y~Qr~GRaGR~ 429 (475)
T PRK01297 368 DVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------FT----------LPEDPDDYVHRIGRTGRA 429 (475)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------eC----------CCCCHHHHHHhhCccCCC
Confidence 999999999999999999999999999999999999999999 66 589999999999999999
Q ss_pred C-CCeEEEecChhhH
Q 010422 376 G-PGKCFRLYPENEF 389 (511)
Q Consensus 376 ~-~G~~~~l~~~~~~ 389 (511)
| .|.++.++++++.
T Consensus 430 g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 430 GASGVSISFAGEDDA 444 (475)
T ss_pred CCCceEEEEecHHHH
Confidence 9 8999999987754
No 34
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.8e-38 Score=302.66 Aligned_cols=316 Identities=20% Similarity=0.323 Sum_probs=233.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchh--chHHHHHhhcc--------ccCCCeEEEEeCccHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG--------FCRDGKLIGVTQPRRVAAV 73 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--t~~~~~l~~~~--------~~~~~~~i~~~~p~~~l~~ 73 (511)
+++...-....+.++|..++....++++++.+|.|||||| +++|+++.-.- ....+...+++.|+|.+++
T Consensus 257 l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaq 336 (673)
T KOG0333|consen 257 LSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQ 336 (673)
T ss_pred HHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHH
Confidence 3344444455689999999999999999999999999999 44444442111 1223677899999999999
Q ss_pred HHHHHHHHHhCCccCCe----eeEEE----------eecccCChhhhHHHHhhCc--CCCCCCchhHhhhhhhhhhhHHH
Q 010422 74 TVAKRVAEESGVELGQR----VGYSI----------RFDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVL 137 (511)
Q Consensus 74 ~~~~~~~~~~~~~~~~~----vg~~~----------~~~~~~~~~~~i~~~l~~~--~l~~~~~iIiDE~H~r~~~~~~l 137 (511)
|+.+.-.++. +..+.. ||... ..+....++.++...+.+. .++++.++|+|||
T Consensus 337 qIeeEt~kf~-~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldea---------- 405 (673)
T KOG0333|consen 337 QIEEETNKFG-KPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEA---------- 405 (673)
T ss_pred HHHHHHHHhc-ccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccch----------
Confidence 9988744433 333322 22110 0111223334444333332 3678999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCC---------------------CccEEE
Q 010422 138 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFA---------------------PLKLII 196 (511)
Q Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~ 196 (511)
|.|+|++|.+.+..++.+++..+-. -.+.++
T Consensus 406 ----------------------------drmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~m 457 (673)
T KOG0333|consen 406 ----------------------------DRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVM 457 (673)
T ss_pred ----------------------------hhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEE
Confidence 5899999999988888888753211 157899
Q ss_pred eccCCC--HHHHH-hhhCCCCeEEeC--Ccccc-ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHH
Q 010422 197 MSASLD--ARGFS-EYFGCAKAVHVQ--GRQFP-VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 270 (511)
Q Consensus 197 ~SAT~~--~~~l~-~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l 270 (511)
+|||+. .+.++ .||..+-++.+. ++..| ++..+.-....+. ...+..+.......+++||+|+++.|+.+
T Consensus 458 ftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k----~kkL~eil~~~~~ppiIIFvN~kk~~d~l 533 (673)
T KOG0333|consen 458 FTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEK----RKKLIEILESNFDPPIIIFVNTKKGADAL 533 (673)
T ss_pred EecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHH----HHHHHHHHHhCCCCCEEEEEechhhHHHH
Confidence 999993 35555 677666555554 23322 2333333333222 33344444444577899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCC
Q 010422 271 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 350 (511)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~ 350 (511)
|+.|.+. ++.+..|||+-++++|+.+++.|++|...|+||||+|++|||||+|.+||| ||
T Consensus 534 Ak~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------yd--- 593 (673)
T KOG0333|consen 534 AKILEKA---------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YD--- 593 (673)
T ss_pred HHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cc---
Confidence 9999987 899999999999999999999999999999999999999999999999999 99
Q ss_pred CcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhH
Q 010422 351 GMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 389 (511)
Q Consensus 351 ~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 389 (511)
++.+..+|.||+||+||+| .|.++.|+++++-
T Consensus 594 -------maksieDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 594 -------MAKSIEDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred -------hhhhHHHHHHHhccccccccCceeEEEeccchh
Confidence 7899999999999999999 9999999998873
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.3e-37 Score=318.10 Aligned_cols=300 Identities=17% Similarity=0.235 Sum_probs=206.4
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
.-.++++|.+++..+.+|+++++++|||||||..+.++++.. +..++++.|+++++.++...+.. .+.. .
T Consensus 9 ~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----~~~~lVi~P~~~L~~dq~~~l~~-~gi~----~ 78 (470)
T TIGR00614 9 LSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----DGITLVISPLISLMEDQVLQLKA-SGIP----A 78 (470)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----CCcEEEEecHHHHHHHHHHHHHH-cCCc----E
Confidence 335788999999999999999999999999995443443332 23577889999999888777653 2221 1
Q ss_pred eEEEeeccc------------------CChhhhHH---HHhhCc-CCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 92 GYSIRFDDR------------------TSTSTRIK---EALLDP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 92 g~~~~~~~~------------------~~~~~~i~---~~l~~~-~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
.+....... ..+...+. .++... ...+++++||||||+...|...+...++.+...+.
T Consensus 79 ~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 158 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQ 158 (470)
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHH
Confidence 111110000 00011110 011111 35678999999999877665544444444332221
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhhhCCC-CeEEeCCccccc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCA-KAVHVQGRQFPV 225 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~~~~~-~~~~~~~~~~~~ 225 (511)
. .++.+++++|||++.. ++.++++-. +.+...+...|
T Consensus 159 ~--------------------------------------~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~- 199 (470)
T TIGR00614 159 K--------------------------------------FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP- 199 (470)
T ss_pred H--------------------------------------cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-
Confidence 0 1678899999999554 455565432 22222221122
Q ss_pred cEEEcCCCCC-chHHHHHHHHHHHhh-cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 010422 226 EILYTLYPEP-DYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (511)
Q Consensus 226 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 303 (511)
...+...... +..+. +..... ..++..+||||+|+++++.++..|.+. ++.+..+||+|++++|.
T Consensus 200 nl~~~v~~~~~~~~~~----l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR~ 266 (470)
T TIGR00614 200 NLYYEVRRKTPKILED----LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEISARD 266 (470)
T ss_pred CcEEEEEeCCccHHHH----HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHHH
Confidence 2222222221 22222 223322 233556799999999999999999876 78899999999999999
Q ss_pred hhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEE
Q 010422 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (511)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (511)
.+++.|++|..+|||||+++++|||+|+|++||+ || .|.|.++|+||+|||||.| +|.|+.
T Consensus 267 ~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~--------~~----------~P~s~~~y~Qr~GRaGR~G~~~~~~~ 328 (470)
T TIGR00614 267 DVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH--------YS----------LPKSMESYYQESGRAGRDGLPSECHL 328 (470)
T ss_pred HHHHHHHcCCCcEEEEechhhccCCcccceEEEE--------eC----------CCCCHHHHHhhhcCcCCCCCCceEEE
Confidence 9999999999999999999999999999999999 77 5889999999999999999 999999
Q ss_pred ecChhhHhh
Q 010422 383 LYPENEFDK 391 (511)
Q Consensus 383 l~~~~~~~~ 391 (511)
+|+..+...
T Consensus 329 ~~~~~d~~~ 337 (470)
T TIGR00614 329 FYAPADINR 337 (470)
T ss_pred EechhHHHH
Confidence 999887654
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.8e-36 Score=321.62 Aligned_cols=300 Identities=15% Similarity=0.166 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeE
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGY 93 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~ 93 (511)
..+++|++++.++..|+++++++|||+|||..+.++++.. ...++++.|+++++.++...+.. .+. ...+
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----~GiTLVISPLiSLmqDQV~~L~~-~GI----~Aa~ 529 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMNLLQ-ANI----PAAS 529 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHh-CCC----eEEE
Confidence 4688999999999999999999999999995444444432 23578889999998755544432 121 1111
Q ss_pred EEee--------------------cccCChhhhH------HHHhhC-cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHH
Q 010422 94 SIRF--------------------DDRTSTSTRI------KEALLD-PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (511)
Q Consensus 94 ~~~~--------------------~~~~~~~~~i------~~~l~~-~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~ 146 (511)
.... .-...+..++ ...+.. .....+++|||||||+...|...+..-++.+..
T Consensus 530 L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~ 609 (1195)
T PLN03137 530 LSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGI 609 (1195)
T ss_pred EECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHH
Confidence 1110 0000111111 111111 112347889999999988776555444444322
Q ss_pred hhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH---HHHHhhhCCCCeEEeCCccc
Q 010422 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAKAVHVQGRQF 223 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~---~~l~~~~~~~~~~~~~~~~~ 223 (511)
.+.. .++.+++++|||++. +++.+.++......+.....
T Consensus 610 Lr~~--------------------------------------fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~ 651 (1195)
T PLN03137 610 LKQK--------------------------------------FPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN 651 (1195)
T ss_pred HHHh--------------------------------------CCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC
Confidence 2210 156789999999944 34566665433333332222
Q ss_pred cccEEEcCCCCCchHHHHHHHHHHHhh-cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 010422 224 PVEILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (511)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r 302 (511)
...+.|...+.... ....+..... ...+...||||+|+++++.++..|.+. ++.+..|||+|++++|
T Consensus 652 RpNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR 719 (1195)
T PLN03137 652 RPNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQR 719 (1195)
T ss_pred ccceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHH
Confidence 22344433332221 1122222222 223567899999999999999999876 8899999999999999
Q ss_pred HhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEE
Q 010422 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (511)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~ 381 (511)
..+++.|.+|+.+|||||+++++|||+|+|++||+ || .|.|.++|+||+|||||.| +|.|+
T Consensus 720 ~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--------yd----------lPkSiEsYyQriGRAGRDG~~g~cI 781 (1195)
T PLN03137 720 AFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HS----------LPKSIEGYHQECGRAGRDGQRSSCV 781 (1195)
T ss_pred HHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE--------cC----------CCCCHHHHHhhhcccCCCCCCceEE
Confidence 99999999999999999999999999999999999 77 6999999999999999999 99999
Q ss_pred EecChhhHhh
Q 010422 382 RLYPENEFDK 391 (511)
Q Consensus 382 ~l~~~~~~~~ 391 (511)
.+|+..++..
T Consensus 782 Llys~~D~~~ 791 (1195)
T PLN03137 782 LYYSYSDYIR 791 (1195)
T ss_pred EEecHHHHHH
Confidence 9998877643
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.7e-36 Score=320.84 Aligned_cols=303 Identities=17% Similarity=0.264 Sum_probs=208.8
Q ss_pred hHHHhhccC-CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 5 KILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 5 ~~~~~~~~l-~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
++++....+ .++++|++++..+.+|+++++++|||||||..+.++++.. ...++++.|+++++.++.+.+...
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----~g~tlVisPl~sL~~dqv~~l~~~- 88 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----DGLTLVVSPLISLMKDQVDQLLAN- 88 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----CCCEEEEecHHHHHHHHHHHHHHc-
Confidence 344444444 4779999999999999999999999999996443343322 235778889999998887766532
Q ss_pred CCccCCeeeEEEeecccCChhh---------------------hHH--HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHH
Q 010422 84 GVELGQRVGYSIRFDDRTSTST---------------------RIK--EALLDPYLSRYSAIIVDEAHERTVHTDVLLGL 140 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~---------------------~i~--~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~ 140 (511)
+. ...+. .+...... ++. .++......+++++||||||+...+...+...
T Consensus 89 gi----~~~~~---~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~ 161 (607)
T PRK11057 89 GV----AAACL---NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPE 161 (607)
T ss_pred CC----cEEEE---cCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHH
Confidence 22 11111 11111110 000 11111123468999999999877666544443
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhhhCC-CCeE
Q 010422 141 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGC-AKAV 216 (511)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~~~~-~~~~ 216 (511)
++.+...+.. .++.++++||||++.. ++.+.++- .+.+
T Consensus 162 y~~L~~l~~~--------------------------------------~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~ 203 (607)
T PRK11057 162 YAALGQLRQR--------------------------------------FPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203 (607)
T ss_pred HHHHHHHHHh--------------------------------------CCCCcEEEEecCCChhHHHHHHHHhCCCCeEE
Confidence 3333322210 1678899999999543 34444432 2333
Q ss_pred EeCCccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 010422 217 HVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (511)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~ 296 (511)
.......| ...|......... ..+........++++||||+|+++++.++..|.+. ++.+..+||+
T Consensus 204 ~~~~~~r~-nl~~~v~~~~~~~----~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~Ha~ 269 (607)
T PRK11057 204 QISSFDRP-NIRYTLVEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYHAG 269 (607)
T ss_pred EECCCCCC-cceeeeeeccchH----HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEecCC
Confidence 33322222 2222222221222 22333334455788999999999999999999876 7889999999
Q ss_pred CCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
|++++|.++++.|++|..+|||||+++++|||+|+|++||+ || .|.|.++|+||+|||||.|
T Consensus 270 l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~--------~d----------~P~s~~~y~Qr~GRaGR~G 331 (607)
T PRK11057 270 LDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FD----------IPRNIESYYQETGRAGRDG 331 (607)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--------eC----------CCCCHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999999 77 5899999999999999999
Q ss_pred -CCeEEEecChhhHh
Q 010422 377 -PGKCFRLYPENEFD 390 (511)
Q Consensus 377 -~G~~~~l~~~~~~~ 390 (511)
+|.|+.+|+..+..
T Consensus 332 ~~~~~ill~~~~d~~ 346 (607)
T PRK11057 332 LPAEAMLFYDPADMA 346 (607)
T ss_pred CCceEEEEeCHHHHH
Confidence 89999999887754
No 38
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=312.91 Aligned_cols=431 Identities=17% Similarity=0.215 Sum_probs=291.9
Q ss_pred CHHHHHHHHHHH-hcCCEEEEEcCCCCchhchHHHHHhhcccc--------CCCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 15 IASVEKRLVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGFC--------RDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 15 ~~~~q~~~~~~l-~~~~~~~i~apTGsGKTt~~~~~l~~~~~~--------~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
...+|.++.+.. ..+.|.+||||||||||-++.+.+++...+ ++.-+++++.|.++++.++.+.+.+.+.
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~- 189 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA- 189 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-
Confidence 355788888776 467899999999999998888777654332 2455899999999999999888776654
Q ss_pred ccCCeeeEEEeecccCC------------hhhhHHH----Hh-hCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 86 ELGQRVGYSIRFDDRTS------------TSTRIKE----AL-LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 86 ~~~~~vg~~~~~~~~~~------------~~~~i~~----~l-~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
.+|..++-..+ +.... ++++... .. ...+++.+.++||||+|
T Consensus 190 ~~gi~v~ELTG-D~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH-------------------- 248 (1230)
T KOG0952|consen 190 PLGISVRELTG-DTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH-------------------- 248 (1230)
T ss_pred cccceEEEecC-cchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh--------------------
Confidence 23333332211 21111 1111110 11 12346778999999999
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCcccccccccc---CCCCccEEEeccCC-CHHHHHhhhCCC---CeEEeCCc
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGR---KFAPLKLIIMSASL-DARGFSEYFGCA---KAVHVQGR 221 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~i~~SAT~-~~~~l~~~~~~~---~~~~~~~~ 221 (511)
++...||+.++.++.+..+. ....+|+|++|||+ |.+++++|++.. ..+.+.++
T Consensus 249 -------------------lLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~ 309 (1230)
T KOG0952|consen 249 -------------------LLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQR 309 (1230)
T ss_pred -------------------hhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccc
Confidence 55566666666666665532 22678999999999 999999999874 36666776
Q ss_pred cccccEE--EcCCCCC--chH-----HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCC-------CCC
Q 010422 222 QFPVEIL--YTLYPEP--DYL-----DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP-------EAS 285 (511)
Q Consensus 222 ~~~~~~~--~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~-------~~~ 285 (511)
.+|+... +...... ... +.....+.+.+. .+.+++|||++|+++.+.|+.|.+...... ...
T Consensus 310 yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~ 387 (1230)
T KOG0952|consen 310 YRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPR 387 (1230)
T ss_pred ccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChh
Confidence 6665443 3222221 111 122333334333 378999999999999999999988765221 111
Q ss_pred CC-------eEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceee
Q 010422 286 RK-------LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 358 (511)
Q Consensus 286 ~~-------~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~ 358 (511)
.+ ..+..+|+||..++|..+++.|..|.++|++||+++++|+|+|+--++|. .++.||++.|.- .
T Consensus 388 ~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~ydsskg~f----~ 459 (1230)
T KOG0952|consen 388 NKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVYDSSKGSF----V 459 (1230)
T ss_pred hHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----CCcccccccCce----e
Confidence 12 46788899999999999999999999999999999999999999999996 788999887654 3
Q ss_pred ecCHHHHHHhccccCCCC---CCeEEEecChhhHhh---ccCCCCC---------------cccccCccHHHHHHHHcCC
Q 010422 359 PISKAQALQRSGRAGREG---PGKCFRLYPENEFDK---LEDSTKP---------------EIKRCNLSNVILQLKALGV 417 (511)
Q Consensus 359 p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~---~~~~~~p---------------ei~~~~l~~~~L~~~~~~~ 417 (511)
-.+..+.+|..|||||++ .|..+.+.+.+..+. +.....| ||....+..+=-.+.+++-
T Consensus 460 dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~y 539 (1230)
T KOG0952|consen 460 DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKY 539 (1230)
T ss_pred eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhc
Confidence 577889999999999999 788888887665433 3333222 2222222222222222221
Q ss_pred C--------CCCc----ccCC-CCC-----CHHHHHHHHHHHHHcCCc--CCC-C--CCCHHHHHHHccCCCCHHHHHHH
Q 010422 418 D--------DIIG----FDFM-EKP-----SRASIIKSLEQLFLLGAL--TDD-C--KLSDPVGHQMARLPLDPIYSKAL 474 (511)
Q Consensus 418 ~--------~~~~----~~~~-~~p-----~~~~l~~al~~L~~~g~l--~~~-~--~~T~~lG~~~~~~~~~p~~~~~~ 474 (511)
. |+.. ...+ ..| ..+.+..++..|.+...+ |.. + ..|+ +||.++.+++..+..+.+
T Consensus 540 TylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~std-lGR~aS~yYik~ETme~~ 618 (1230)
T KOG0952|consen 540 TYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTD-LGRVASNYYIKYETMETF 618 (1230)
T ss_pred eeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccc-hhhhhhhhhhhhHHHHHH
Confidence 0 1111 1111 112 123445677777666555 322 2 6898 999999999999999999
Q ss_pred HHhhh-cCCHHHHHHHHHhhcCCC
Q 010422 475 IVAGQ-FNCLEEMLITVAMLSVES 497 (511)
Q Consensus 475 ~~~~~-~~~~~~~l~i~a~l~~~~ 497 (511)
..... +--.+++|-++++-+..+
T Consensus 619 nn~~k~~~se~~iL~lis~aeEfs 642 (1230)
T KOG0952|consen 619 NNLPKSFYSEDDILALISMAEEFS 642 (1230)
T ss_pred HhcccccCCHHHHHHHHHhhHhhh
Confidence 99987 777888888888776654
No 39
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-37 Score=290.75 Aligned_cols=328 Identities=20% Similarity=0.254 Sum_probs=237.8
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-----CCC-eEEEEeCccHHHHHHHHHH
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-----RDG-KLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-----~~~-~~i~~~~p~~~l~~~~~~~ 78 (511)
+..+....-..+|+|...++.+.+++++++.++||||||..+..++++.... .++ ...+++.|+|+++.|+.+.
T Consensus 19 ~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V 98 (567)
T KOG0345|consen 19 EALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREV 98 (567)
T ss_pred HHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHH
Confidence 3344444445789999999999999999999999999996555555443321 112 3578999999999998876
Q ss_pred HHHHhCC----ccCCeeeEEEe-----------ecccCChhhhHHHHhhC----cCCCCCCchhHhhhhhhhhhhHHHHH
Q 010422 79 VAEESGV----ELGQRVGYSIR-----------FDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLG 139 (511)
Q Consensus 79 ~~~~~~~----~~~~~vg~~~~-----------~~~~~~~~~~i~~~l~~----~~l~~~~~iIiDE~H~r~~~~~~ll~ 139 (511)
...+... .....+|...- ..-.+.++.++..++.. ..+.+++++|+|||
T Consensus 99 ~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEA------------ 166 (567)
T KOG0345|consen 99 AQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEA------------ 166 (567)
T ss_pred HHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecch------------
Confidence 5444322 12222332100 00112234455555554 23558999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHh-hhCCCCeE
Q 010422 140 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSE-YFGCAKAV 216 (511)
Q Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~-~~~~~~~~ 216 (511)
|.++|++|..++..+++.++ .+.|.=++|||. ..+++.. .+.++..+
T Consensus 167 --------------------------DrLldmgFe~~~n~ILs~LP----KQRRTGLFSATq~~~v~dL~raGLRNpv~V 216 (567)
T KOG0345|consen 167 --------------------------DRLLDMGFEASVNTILSFLP----KQRRTGLFSATQTQEVEDLARAGLRNPVRV 216 (567)
T ss_pred --------------------------HhHhcccHHHHHHHHHHhcc----cccccccccchhhHHHHHHHHhhccCceee
Confidence 68999999999999999999 556888999999 4455554 34444444
Q ss_pred EeCCcc---cc--ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010422 217 HVQGRQ---FP--VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (511)
Q Consensus 217 ~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (511)
.+.... -| +..+|..... +.....++++..+...++++||++|.+.++.....+..... ...++
T Consensus 217 ~V~~k~~~~tPS~L~~~Y~v~~a----~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~-------~~~i~ 285 (567)
T KOG0345|consen 217 SVKEKSKSATPSSLALEYLVCEA----DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLK-------KREIF 285 (567)
T ss_pred eecccccccCchhhcceeeEecH----HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhC-------CCcEE
Confidence 443322 23 4455544433 33445556666667789999999999999999998887633 77899
Q ss_pred EccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccc
Q 010422 292 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 371 (511)
Q Consensus 292 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GR 371 (511)
.+||.|.+..|..+++.|++-...|++|||++++|+|||+|++||+ || .|.++++|+||+||
T Consensus 286 ~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~D----------pP~~~~~FvHR~GR 347 (567)
T KOG0345|consen 286 SIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FD----------PPKDPSSFVHRCGR 347 (567)
T ss_pred EecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe--------cC----------CCCChhHHHhhcch
Confidence 9999999999999999999988899999999999999999999999 99 58999999999999
Q ss_pred cCCCC-CCeEEEecC--hhhHhh-ccCCCCCccccc
Q 010422 372 AGREG-PGKCFRLYP--ENEFDK-LEDSTKPEIKRC 403 (511)
Q Consensus 372 aGR~~-~G~~~~l~~--~~~~~~-~~~~~~pei~~~ 403 (511)
+||.| .|.++.+.. ++.|.. |.-...|++.+.
T Consensus 348 TaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 348 TARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred hhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 99999 888887774 444544 333334655433
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.8e-36 Score=325.98 Aligned_cols=310 Identities=21% Similarity=0.202 Sum_probs=203.6
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-------CCCeEEEEeCccHHHHHHHHHHHHHH----
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-------RDGKLIGVTQPRRVAAVTVAKRVAEE---- 82 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-------~~~~~i~~~~p~~~l~~~~~~~~~~~---- 82 (511)
.++++|.++++.+.+|++++++||||||||..+.++++..... .++..++++.|+++++.++.+++...
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i 111 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEI 111 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999997766666543321 23457899999999999988764321
Q ss_pred ------hCCcc-CCeeeEEEeeccc---------------CChhhhHHHHhhCc----CCCCCCchhHhhhhhhhhhhHH
Q 010422 83 ------SGVEL-GQRVGYSIRFDDR---------------TSTSTRIKEALLDP----YLSRYSAIIVDEAHERTVHTDV 136 (511)
Q Consensus 83 ------~~~~~-~~~vg~~~~~~~~---------------~~~~~~i~~~l~~~----~l~~~~~iIiDE~H~r~~~~~~ 136 (511)
.+... +..++.... +.. ..+..++..++..+ .+.+++++|+||+|+...
T Consensus 112 ~~~~~~~g~~~~~i~v~v~~G-dt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~---- 186 (876)
T PRK13767 112 REIAKERGEELPEIRVAIRTG-DTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAE---- 186 (876)
T ss_pred HHHHHhcCCCcCCeeEEEEcC-CCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhcc----
Confidence 12222 222222111 111 11222232333332 467899999999995321
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCC--
Q 010422 137 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA-- 213 (511)
Q Consensus 137 ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~-- 213 (511)
..++..+...+.++......+.|+|++|||+ +.+.+++|++..
T Consensus 187 ----------------------------------~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~ 232 (876)
T PRK13767 187 ----------------------------------NKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYED 232 (876)
T ss_pred ----------------------------------CccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccc
Confidence 1111111111111111111567999999999 888999998652
Q ss_pred -----CeEEeCCcc-ccccEEEcCC-------CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhc
Q 010422 214 -----KAVHVQGRQ-FPVEILYTLY-------PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ 280 (511)
Q Consensus 214 -----~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~ 280 (511)
+...+.... .+.+...... ............+..... ..+++||||||++.++.++..|.+.+..
T Consensus 233 ~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~ 310 (876)
T PRK13767 233 DGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPE 310 (876)
T ss_pred cCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchh
Confidence 112222211 1111111110 011111222333333332 3678999999999999999999875331
Q ss_pred CCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeec
Q 010422 281 LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 360 (511)
Q Consensus 281 ~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~ 360 (511)
. ..+..+..|||+|++++|..+++.|++|..+|||||+++++|||+|++++||+ |+ .|.
T Consensus 311 ~---~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~----------~P~ 369 (876)
T PRK13767 311 E---YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LG----------SPK 369 (876)
T ss_pred h---ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eC----------CCC
Confidence 1 12457899999999999999999999999999999999999999999999999 66 588
Q ss_pred CHHHHHHhccccCCCC----CCeEEEecC
Q 010422 361 SKAQALQRSGRAGREG----PGKCFRLYP 385 (511)
Q Consensus 361 s~~~~~Qr~GRaGR~~----~G~~~~l~~ 385 (511)
+.++|+||+|||||.+ .|.++....
T Consensus 370 sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 370 SVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred CHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999999874 466666543
No 41
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=290.62 Aligned_cols=306 Identities=19% Similarity=0.273 Sum_probs=229.8
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcc----c-cCCCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG----F-CRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~----~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
..-..+++|+..+..+..|+++++.|-||||||..+.+...+.. + .+.+..++++.|+|+++.|.+....+....
T Consensus 101 GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~ 180 (543)
T KOG0342|consen 101 GFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKY 180 (543)
T ss_pred CccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhh
Confidence 34457899999999999999999999999999944443333322 2 234667899999999999998887766655
Q ss_pred ccCCeeeEEEeecccCChh--------------hhHHHHhhC---cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 86 ELGQRVGYSIRFDDRTSTS--------------TRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 86 ~~~~~vg~~~~~~~~~~~~--------------~~i~~~l~~---~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
..+..+++.+++....... .++..++.+ ....++.++|+|||
T Consensus 181 h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA--------------------- 239 (543)
T KOG0342|consen 181 HESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA--------------------- 239 (543)
T ss_pred CCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc---------------------
Confidence 5566677666544433222 233333333 23566789999999
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhhh-CC-CCeEEeCCcc--
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYF-GC-AKAVHVQGRQ-- 222 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~~-~~-~~~~~~~~~~-- 222 (511)
|+++|.+|...++.++..++ ...|..++|||. ..++++... .. +..+.+.+..
T Consensus 240 -----------------DrlLd~GF~~di~~Ii~~lp----k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~ 298 (543)
T KOG0342|consen 240 -----------------DRLLDIGFEEDVEQIIKILP----KQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGER 298 (543)
T ss_pred -----------------hhhhhcccHHHHHHHHHhcc----ccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCc
Confidence 68999999999999999998 667999999999 445565432 22 2222222111
Q ss_pred ---ccccEEEcCCCCCchHHHHHHHHHHHhhcCC-CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCC
Q 010422 223 ---FPVEILYTLYPEPDYLDATLITIFQVHLDEA-PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 298 (511)
Q Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~ 298 (511)
..++.-|...+....+.. ++....... +.+++|||+|...+..++..|... +++|..+||+++
T Consensus 299 ~The~l~Qgyvv~~~~~~f~l----l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~eiHgk~~ 365 (543)
T KOG0342|consen 299 ETHERLEQGYVVAPSDSRFSL----LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLEIHGKQK 365 (543)
T ss_pred chhhcccceEEeccccchHHH----HHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc---------CCchhhhhcCCc
Confidence 123343444444333322 222332222 388999999999999999999865 899999999999
Q ss_pred HHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-C
Q 010422 299 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-P 377 (511)
Q Consensus 299 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~ 377 (511)
+..|..++..|++.+.-||||||+++||+|+|+|++||+ || .|.++.+|+||+||+||.| .
T Consensus 366 Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~----------~P~d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 366 QNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YD----------PPSDPEQYIHRVGRTAREGKE 427 (543)
T ss_pred ccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE--------eC----------CCCCHHHHHHHhccccccCCC
Confidence 999999999999999999999999999999999999999 87 5999999999999999999 9
Q ss_pred CeEEEecChhhH
Q 010422 378 GKCFRLYPENEF 389 (511)
Q Consensus 378 G~~~~l~~~~~~ 389 (511)
|+++.+..+++.
T Consensus 428 G~alL~l~p~El 439 (543)
T KOG0342|consen 428 GKALLLLAPWEL 439 (543)
T ss_pred ceEEEEeChhHH
Confidence 999999877654
No 42
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-36 Score=289.32 Aligned_cols=346 Identities=22% Similarity=0.272 Sum_probs=248.4
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchh--chHHHHHhhccc-----cCCCeEEEEeCccHHHHHHHHHH
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--t~~~~~l~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~ 78 (511)
+.+..+.-.++.+|++.++.+.+|++++|.++|||||| +++|+.-.-... +..|.-++++.|+|+++.|....
T Consensus 151 L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~ 230 (708)
T KOG0348|consen 151 LNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYET 230 (708)
T ss_pred HHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHH
Confidence 34445556689999999999999999999999999999 556655332222 33467789999999999999998
Q ss_pred HHHHhCCccCCeeeEEEeecccCChhhhHH--------------HHh-h--CcCCCCCCchhHhhhhhhhhhhHHHHHHH
Q 010422 79 VAEESGVELGQRVGYSIRFDDRTSTSTRIK--------------EAL-L--DPYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (511)
Q Consensus 79 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~--------------~~l-~--~~~l~~~~~iIiDE~H~r~~~~~~ll~~l 141 (511)
+.+.....-...-|+.++++..-+...++. ..+ + ...++++.++|+||+
T Consensus 231 ~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEa-------------- 296 (708)
T KOG0348|consen 231 VQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEA-------------- 296 (708)
T ss_pred HHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecch--------------
Confidence 888776544455567777777777666665 111 1 124678999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccc---cC------CCCccEEEeccCC--CHHHHHhhh
Q 010422 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG---RK------FAPLKLIIMSASL--DARGFSEYF 210 (511)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~---~~------~~~~~~i~~SAT~--~~~~l~~~~ 210 (511)
|.+++.+|+..+..++..+.. .. ....+-+++|||+ ....+++.-
T Consensus 297 ------------------------DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~s 352 (708)
T KOG0348|consen 297 ------------------------DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLS 352 (708)
T ss_pred ------------------------hHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcc
Confidence 689999999988888777632 11 1135678999999 445666432
Q ss_pred -CCCCeEEeC----------------------------CccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEc
Q 010422 211 -GCAKAVHVQ----------------------------GRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFL 261 (511)
Q Consensus 211 -~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~ 261 (511)
.++..+..+ .-+..+...|...|..-.+-.....+.+....++..+++||+
T Consensus 353 LkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~ 432 (708)
T KOG0348|consen 353 LKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFF 432 (708)
T ss_pred ccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEE
Confidence 222222200 000112233444444444555556666666666677899999
Q ss_pred CCHHHHHHHHHHHHHHHhcC-------------CCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCC
Q 010422 262 TGQEEIESVERLVQERLLQL-------------PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVT 328 (511)
Q Consensus 262 ~s~~~~~~l~~~l~~~~~~~-------------~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvd 328 (511)
++.+.++.-+..+.+.+... ..-..+..+..+||+|++++|..+++.|.....-|++|||++++|+|
T Consensus 433 S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLD 512 (708)
T KOG0348|consen 433 SCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLD 512 (708)
T ss_pred echhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCC
Confidence 99999999888887765431 11123557889999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecC--hhhHhhccCCCCCcccccCc
Q 010422 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP--ENEFDKLEDSTKPEIKRCNL 405 (511)
Q Consensus 329 ip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~--~~~~~~~~~~~~pei~~~~l 405 (511)
+|+|++||+ || .|.+.++|+||+||+.|.| .|.+..+.. +.+|-.......+.+...++
T Consensus 513 lP~V~~vVQ--------Yd----------~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~ 574 (708)
T KOG0348|consen 513 LPHVGLVVQ--------YD----------PPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDM 574 (708)
T ss_pred CCCcCeEEE--------eC----------CCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccch
Confidence 999999999 99 6999999999999999999 888877764 44554444444444444444
Q ss_pred cH
Q 010422 406 SN 407 (511)
Q Consensus 406 ~~ 407 (511)
..
T Consensus 575 ~~ 576 (708)
T KOG0348|consen 575 EI 576 (708)
T ss_pred hh
Confidence 33
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.1e-35 Score=315.72 Aligned_cols=294 Identities=17% Similarity=0.224 Sum_probs=206.0
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeE
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGY 93 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~ 93 (511)
..++.|++++.++..|+++++++|||+|||..+.++++.. +..++++.|+..++.++.+.+... +. .+.+
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----~g~~lVisPl~sL~~dq~~~l~~~-gi----~~~~ 82 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----KGLTVVISPLISLMKDQVDQLRAA-GV----AAAY 82 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHHc-CC----cEEE
Confidence 4688999999999999999999999999995544444322 234677789999998887776542 32 2222
Q ss_pred EEeecccCChh---------------------hhHH--HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcc
Q 010422 94 SIRFDDRTSTS---------------------TRIK--EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (511)
Q Consensus 94 ~~~~~~~~~~~---------------------~~i~--~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~ 150 (511)
.. +..+.. .++. .+.......+++++||||+|+.+.|...+...++++...+..
T Consensus 83 ~~---s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~ 159 (591)
T TIGR01389 83 LN---STLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER 159 (591)
T ss_pred Ee---CCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh
Confidence 21 111111 1110 111111245789999999999877665555444444332211
Q ss_pred ccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhhhCCCC-eEEeCCcccccc
Q 010422 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAK-AVHVQGRQFPVE 226 (511)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~~~~~~-~~~~~~~~~~~~ 226 (511)
. ++.+++++|||.+.. ++.++++... .....+ ....+
T Consensus 160 ~--------------------------------------~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~n 200 (591)
T TIGR01389 160 F--------------------------------------PQVPRIALTATADAETRQDIRELLRLADANEFITS-FDRPN 200 (591)
T ss_pred C--------------------------------------CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-CCCCC
Confidence 0 455699999999544 4566775332 222222 22223
Q ss_pred EEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhc
Q 010422 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 306 (511)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 306 (511)
..|......+... .+........++++||||+|+++++.+++.|.+. ++.+..+||+|+.++|..++
T Consensus 201 l~~~v~~~~~~~~----~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 201 LRFSVVKKNNKQK----FLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ---------GISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred cEEEEEeCCCHHH----HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEEECCCCHHHHHHHH
Confidence 3333222222222 2233333334678999999999999999999875 78899999999999999999
Q ss_pred CcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecC
Q 010422 307 APAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (511)
Q Consensus 307 ~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (511)
+.|.+|.++|||||+++++|||+|++++||+ || .|.|.++|+||+|||||.| +|.|+.+|+
T Consensus 268 ~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~----------~p~s~~~y~Q~~GRaGR~G~~~~~il~~~ 329 (591)
T TIGR01389 268 EDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YD----------MPGNLESYYQEAGRAGRDGLPAEAILLYS 329 (591)
T ss_pred HHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cC----------CCCCHHHHhhhhccccCCCCCceEEEecC
Confidence 9999999999999999999999999999999 76 5889999999999999999 899999998
Q ss_pred hhhHh
Q 010422 386 ENEFD 390 (511)
Q Consensus 386 ~~~~~ 390 (511)
..+..
T Consensus 330 ~~d~~ 334 (591)
T TIGR01389 330 PADIA 334 (591)
T ss_pred HHHHH
Confidence 77653
No 44
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=272.86 Aligned_cols=312 Identities=20% Similarity=0.317 Sum_probs=230.5
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC-CeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
+..-+-..++++|+..++.|..|++++-+|.||||||+.+.+.+++.+...+ +.-.+++.|+|+++.|.++++. ..+.
T Consensus 22 l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~-alGk 100 (442)
T KOG0340|consen 22 LKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFI-ALGK 100 (442)
T ss_pred HHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHH-Hhcc
Confidence 3444556789999999999999999999999999999999999998877665 5678999999999999998864 3444
Q ss_pred ccCCeeeEEEeeccc--------------CChhhhHHHHhhC------cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHH
Q 010422 86 ELGQRVGYSIRFDDR--------------TSTSTRIKEALLD------PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (511)
Q Consensus 86 ~~~~~vg~~~~~~~~--------------~~~~~~i~~~l~~------~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~ 145 (511)
..+..+.....+.+. ..+..++...+.. ..++++.++|+|||
T Consensus 101 ~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA------------------ 162 (442)
T KOG0340|consen 101 LLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA------------------ 162 (442)
T ss_pred cccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch------------------
Confidence 444444433332221 1222222222221 13677899999999
Q ss_pred HhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCC----eEEe---
Q 010422 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAK----AVHV--- 218 (511)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~----~~~~--- 218 (511)
|.+++..|...++.+.+.++ ...|.+++|||++ +.+.+.++.+. .+..
T Consensus 163 --------------------DrvL~~~f~d~L~~i~e~lP----~~RQtLlfSATit-d~i~ql~~~~i~k~~a~~~e~~ 217 (442)
T KOG0340|consen 163 --------------------DRVLAGCFPDILEGIEECLP----KPRQTLLFSATIT-DTIKQLFGCPITKSIAFELEVI 217 (442)
T ss_pred --------------------hhhhccchhhHHhhhhccCC----CccceEEEEeehh-hHHHHhhcCCcccccceEEecc
Confidence 57888888777777777776 4569999999992 12222332211 0111
Q ss_pred CCcccc--ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 010422 219 QGRQFP--VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (511)
Q Consensus 219 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~ 296 (511)
++...+ +...|...+. +-.+..+..++....+++++.++||+++..+|+.++..|... .+.+..+||.
T Consensus 218 ~~vstvetL~q~yI~~~~-~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~ 287 (442)
T KOG0340|consen 218 DGVSTVETLYQGYILVSI-DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQ 287 (442)
T ss_pred CCCCchhhhhhheeecch-hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhc
Confidence 111111 1111211111 112233334444455556889999999999999999999887 8999999999
Q ss_pred CCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
|++.+|...+..|+++..+||||||+|++|+|||.|+.||| || .|.++.+|+||+||++|+|
T Consensus 288 m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN--------~d----------iPr~P~~yiHRvGRtARAG 349 (442)
T KOG0340|consen 288 MPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN--------HD----------IPRDPKDYIHRVGRTARAG 349 (442)
T ss_pred chHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe--------cC----------CCCCHHHHHHhhcchhccc
Confidence 99999999999999999999999999999999999999999 88 7999999999999999999
Q ss_pred -CCeEEEecChhhHh
Q 010422 377 -PGKCFRLYPENEFD 390 (511)
Q Consensus 377 -~G~~~~l~~~~~~~ 390 (511)
.|.++.++++.+.+
T Consensus 350 R~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 350 RKGMAISIVTQRDVE 364 (442)
T ss_pred CCcceEEEechhhHH
Confidence 89999999977654
No 45
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=287.82 Aligned_cols=312 Identities=16% Similarity=0.242 Sum_probs=239.1
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc----cC-CCeEEEEeCccHHHHHHHHHHHHHH-
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF----CR-DGKLIGVTQPRRVAAVTVAKRVAEE- 82 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~----~~-~~~~i~~~~p~~~l~~~~~~~~~~~- 82 (511)
-.....++.+|++.+.....|++++-.|.||||||..+..+++++.+ .. .|.-++++.|+|+++.|....+.+.
T Consensus 86 e~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 86 EAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred hcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 34455678999999999999999999999999999555555554443 22 3666889999999999998876543
Q ss_pred --hCCccCCeeeEEE---------eecccCChhhhHH-HHhhCcC--CCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 83 --SGVELGQRVGYSI---------RFDDRTSTSTRIK-EALLDPY--LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 83 --~~~~~~~~vg~~~---------~~~~~~~~~~~i~-~~l~~~~--l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
.....|..+|... +..-.+.++.++. .+-.++. .+++.++|+|||
T Consensus 166 k~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA--------------------- 224 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA--------------------- 224 (758)
T ss_pred hccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH---------------------
Confidence 2333344444211 0011112233333 2223344 457899999999
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhhh-CCCCeEEeC-----C
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYF-GCAKAVHVQ-----G 220 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~~-~~~~~~~~~-----~ 220 (511)
|+|+|++|..++..+++.++ +..|.+++|||. +..++++.- .++..+.+. +
T Consensus 225 -----------------DR~LDMGFk~tL~~Ii~~lP----~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~a 283 (758)
T KOG0343|consen 225 -----------------DRMLDMGFKKTLNAIIENLP----KKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAA 283 (758)
T ss_pred -----------------HHHHHHhHHHHHHHHHHhCC----hhheeeeeecccchhHHHHHHhhcCCCcEEEEecccccc
Confidence 69999999999999999998 677999999999 778888763 445455443 1
Q ss_pred ccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH
Q 010422 221 RQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (511)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~ 300 (511)
.+..+..+|...+. +..++.++.........++|||++|.+++..++..+++. .++..+..+||.|.+.
T Consensus 284 tP~~L~Q~y~~v~l----~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~ 352 (758)
T KOG0343|consen 284 TPSNLQQSYVIVPL----EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHGTMSQK 352 (758)
T ss_pred ChhhhhheEEEEeh----hhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeeccchhHH
Confidence 22234455555444 345555666666777889999999999999999988875 2488999999999999
Q ss_pred HHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCe
Q 010422 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (511)
Q Consensus 301 ~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~ 379 (511)
.|..++..|-..+--|++|||++++|+|+|.|++||+ || +|.+.++|+||+||++|.+ .|.
T Consensus 353 ~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~D----------CPedv~tYIHRvGRtAR~~~~G~ 414 (758)
T KOG0343|consen 353 KRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VD----------CPEDVDTYIHRVGRTARYKERGE 414 (758)
T ss_pred HHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ec----------CchhHHHHHHHhhhhhcccCCCc
Confidence 9999999999989999999999999999999999999 88 8999999999999999999 999
Q ss_pred EEEecChhhHhh
Q 010422 380 CFRLYPENEFDK 391 (511)
Q Consensus 380 ~~~l~~~~~~~~ 391 (511)
++.+.++.+.+.
T Consensus 415 sll~L~psEeE~ 426 (758)
T KOG0343|consen 415 SLLMLTPSEEEA 426 (758)
T ss_pred eEEEEcchhHHH
Confidence 999998776444
No 46
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-36 Score=290.40 Aligned_cols=311 Identities=19% Similarity=0.202 Sum_probs=229.1
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-----------CCeEEEEeCccHHHHHHHHHHH
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----------DGKLIGVTQPRRVAAVTVAKRV 79 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-----------~~~~i~~~~p~~~l~~~~~~~~ 79 (511)
..-.++++|+-.++.+..|++++.+|+||||||..+.+.+....+.. ....++++.|+|+++.|...+.
T Consensus 93 ~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea 172 (482)
T KOG0335|consen 93 GYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEA 172 (482)
T ss_pred cccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHH
Confidence 33468899999999999999999999999999955444443332211 1357899999999999999998
Q ss_pred HHHhCCccCC-eeeEEE------------eecccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHH
Q 010422 80 AEESGVELGQ-RVGYSI------------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (511)
Q Consensus 80 ~~~~~~~~~~-~vg~~~------------~~~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~ 144 (511)
.++.....-. .+.|.. +.+..+.+..++..++.. -.+.++.++|+|||
T Consensus 173 ~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEA----------------- 235 (482)
T KOG0335|consen 173 RKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEA----------------- 235 (482)
T ss_pred HhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecch-----------------
Confidence 7776543222 222221 111222344455555543 34778899999999
Q ss_pred HHhhccccCCCCCCCCCCCCchhhhc-cCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhhh-CC-CCeE---
Q 010422 145 QNARSKSADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYF-GC-AKAV--- 216 (511)
Q Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~~-~~-~~~~--- 216 (511)
|.|+| ++|++.+..++.+.........|.+++|||. +...++.+| .+ ...+
T Consensus 236 ---------------------DrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~ 294 (482)
T KOG0335|consen 236 ---------------------DRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG 294 (482)
T ss_pred ---------------------HHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe
Confidence 68999 9999999999998876555778999999999 444555444 22 1111
Q ss_pred EeCCccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCC-----cEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010422 217 HVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPG-----DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (511)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (511)
.+.+....+..........+.....++.+.........+ .++|||.+++.+.+++..|... ++...
T Consensus 295 rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~ 365 (482)
T KOG0335|consen 295 RVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAK 365 (482)
T ss_pred eeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCce
Confidence 122222233333333333333333333332222111234 7999999999999999999886 88999
Q ss_pred EccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccc
Q 010422 292 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 371 (511)
Q Consensus 292 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GR 371 (511)
.+||..++.+|.+.++.|++|...|+|||+++++|+|||+|++||+ || .|.+..+|+||+||
T Consensus 366 sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yD----------mP~d~d~YvHRIGR 427 (482)
T KOG0335|consen 366 SIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YD----------MPADIDDYVHRIGR 427 (482)
T ss_pred eecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------ee----------cCcchhhHHHhccc
Confidence 9999999999999999999999999999999999999999999999 99 79999999999999
Q ss_pred cCCCC-CCeEEEecCh
Q 010422 372 AGREG-PGKCFRLYPE 386 (511)
Q Consensus 372 aGR~~-~G~~~~l~~~ 386 (511)
+||.| .|.++.|+..
T Consensus 428 TGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 428 TGRVGNGGRATSFFNE 443 (482)
T ss_pred cccCCCCceeEEEecc
Confidence 99999 8999999983
No 47
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-36 Score=288.35 Aligned_cols=309 Identities=20% Similarity=0.295 Sum_probs=229.5
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC----CeEEEEeCccHHHHHHHHHH---HHHH
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRRVAAVTVAKR---VAEE 82 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~----~~~i~~~~p~~~l~~~~~~~---~~~~ 82 (511)
-....|+|+|...++-..-|++++.||-||||||..+.+++++..+-++ ..+++++.|+|.++.|+++. ++++
T Consensus 199 lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3444689999999999999999999999999999877777777654332 45899999999999887754 5666
Q ss_pred hCCccCCeeeEEE----------eecccCChhhhHHHHhh-Cc--CCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 83 SGVELGQRVGYSI----------RFDDRTSTSTRIKEALL-DP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 83 ~~~~~~~~vg~~~----------~~~~~~~~~~~i~~~l~-~~--~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
....++..+|... +.+....++.++...+. .+ .+.++.++|+|||
T Consensus 279 t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA---------------------- 336 (691)
T KOG0338|consen 279 TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA---------------------- 336 (691)
T ss_pred ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH----------------------
Confidence 6666665555321 11222233444443333 33 4788999999999
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhhhCCCCe-EEeCCcc-cc-
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKA-VHVQGRQ-FP- 224 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~~~~~~~-~~~~~~~-~~- 224 (511)
|+|++.+|..++.+++..|+ .+.|.+++|||| ..++++..--+.|+ +.+.... .+
T Consensus 337 ----------------DRMLeegFademnEii~lcp----k~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~ 396 (691)
T KOG0338|consen 337 ----------------DRMLEEGFADEMNEIIRLCP----KNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAP 396 (691)
T ss_pred ----------------HHHHHHHHHHHHHHHHHhcc----ccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccch
Confidence 68999999999999999998 677999999999 55677765444432 2222211 11
Q ss_pred -ccEEEc-CCCCCch-HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH
Q 010422 225 -VEILYT-LYPEPDY-LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (511)
Q Consensus 225 -~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~ 301 (511)
+...|. ..+..+. -+.++..++. ..-...++||+.|++.|+.+.-+|--. ++.+.-+||++++++
T Consensus 397 ~LtQEFiRIR~~re~dRea~l~~l~~---rtf~~~~ivFv~tKk~AHRl~IllGLl---------gl~agElHGsLtQ~Q 464 (691)
T KOG0338|consen 397 KLTQEFIRIRPKREGDREAMLASLIT---RTFQDRTIVFVRTKKQAHRLRILLGLL---------GLKAGELHGSLTQEQ 464 (691)
T ss_pred hhhHHHheeccccccccHHHHHHHHH---HhcccceEEEEehHHHHHHHHHHHHHh---------hchhhhhcccccHHH
Confidence 111111 1112111 1222222222 112567999999999999987766433 888999999999999
Q ss_pred HHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeE
Q 010422 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (511)
Q Consensus 302 r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~ 380 (511)
|...++.|+++++.||||||+|++|+||++|.+||| |+ .|.+...|+||+||+.|.| .|..
T Consensus 465 RlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN--------y~----------mP~t~e~Y~HRVGRTARAGRaGrs 526 (691)
T KOG0338|consen 465 RLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN--------YA----------MPKTIEHYLHRVGRTARAGRAGRS 526 (691)
T ss_pred HHHHHHHHHhccCCEEEEechhhccCCccceeEEEe--------cc----------CchhHHHHHHHhhhhhhcccCcce
Confidence 999999999999999999999999999999999999 88 7999999999999999999 9999
Q ss_pred EEecChhhHh
Q 010422 381 FRLYPENEFD 390 (511)
Q Consensus 381 ~~l~~~~~~~ 390 (511)
+.|+.+++-+
T Consensus 527 VtlvgE~dRk 536 (691)
T KOG0338|consen 527 VTLVGESDRK 536 (691)
T ss_pred EEEeccccHH
Confidence 9999877654
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=294.70 Aligned_cols=365 Identities=18% Similarity=0.208 Sum_probs=241.7
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC------CCeEEEEeCccHHHHHHHHHHHHHH---
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR------DGKLIGVTQPRRVAAVTVAKRVAEE--- 82 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~------~~~~i~~~~p~~~l~~~~~~~~~~~--- 82 (511)
.-.+++.|.++++.+.+|++++|+||||||||..+.++++...... ++..++++.|.+++...+..++...
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 5578999999999999999999999999999966655655443322 3568999999999999999886543
Q ss_pred hCCccCCeeeEEEeec----------ccCChhhhHHHHhhC----cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 83 SGVELGQRVGYSIRFD----------DRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 83 ~~~~~~~~vg~~~~~~----------~~~~~~~~i~~~l~~----~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
.|..+....|...+.. -...+++.+.-++.. ..+.++.++|+||+|+
T Consensus 100 ~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe------------------- 160 (814)
T COG1201 100 LGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA------------------- 160 (814)
T ss_pred cCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh-------------------
Confidence 3333322222111110 001122222233332 3588999999999994
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCC----CeEEeCC-cc
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA----KAVHVQG-RQ 222 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~----~~~~~~~-~~ 222 (511)
+.+..||.++.-.+.++.... +++|.|++|||+ +++..++|+.+. .++.+.. +.
T Consensus 161 -------------------l~~sKRG~~Lsl~LeRL~~l~-~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~ 220 (814)
T COG1201 161 -------------------LAESKRGVQLALSLERLRELA-GDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKK 220 (814)
T ss_pred -------------------hhccccchhhhhhHHHHHhhC-cccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCc
Confidence 333444444444455555444 389999999999 999999999654 2333332 22
Q ss_pred ccccEEEcCCCC---CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCH
Q 010422 223 FPVEILYTLYPE---PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 299 (511)
Q Consensus 223 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~ 299 (511)
..+++....... ..........+...... ...+|||+|||..+|.++..|.+.. ...+..|||+++.
T Consensus 221 ~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSr 290 (814)
T COG1201 221 LEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSR 290 (814)
T ss_pred ceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccH
Confidence 333333222111 11123344444444443 4489999999999999999998863 3689999999999
Q ss_pred HHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---
Q 010422 300 EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG--- 376 (511)
Q Consensus 300 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~--- 376 (511)
+.|..+++.|++|+.+++|||+.+|.|||+.+|+.||+ |. .|.+.+.+.||+||+|+.-
T Consensus 291 e~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~----------SP~sV~r~lQRiGRsgHr~~~~ 352 (814)
T COG1201 291 ELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LG----------SPKSVNRFLQRIGRAGHRLGEV 352 (814)
T ss_pred HHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE--------eC----------CcHHHHHHhHhccccccccCCc
Confidence 99999999999999999999999999999999999999 54 5999999999999999765
Q ss_pred -CCeEEEecChhhHhh--------ccCCCCCcccccCccHHHHHHHHcCCCCCCc----c-----cC-CCCCCHHHHHHH
Q 010422 377 -PGKCFRLYPENEFDK--------LEDSTKPEIKRCNLSNVILQLKALGVDDIIG----F-----DF-MEKPSRASIIKS 437 (511)
Q Consensus 377 -~G~~~~l~~~~~~~~--------~~~~~~pei~~~~l~~~~L~~~~~~~~~~~~----~-----~~-~~~p~~~~l~~a 437 (511)
.|..|..-..+..+. -.....+++-..+|+-+.-++.++-+..... + .+ +..-+.+.+...
T Consensus 353 Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~L~~e~f~~v 432 (814)
T COG1201 353 SKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYADLSREDFRLV 432 (814)
T ss_pred ccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 344444442222222 1112234555556655554444432222111 0 11 122356777778
Q ss_pred HHHHHH
Q 010422 438 LEQLFL 443 (511)
Q Consensus 438 l~~L~~ 443 (511)
++.|..
T Consensus 433 ~~~l~~ 438 (814)
T COG1201 433 LRYLAG 438 (814)
T ss_pred HHHHhh
Confidence 888877
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.3e-33 Score=303.72 Aligned_cols=298 Identities=20% Similarity=0.255 Sum_probs=204.6
Q ss_pred hccCCCHHHHHHHHHHHhcC------CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 10 RKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~------~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
...+.+++.|.++++.+.++ .+.+++||||||||..+..+++..... +.+++++.|++.++.|..+.+.+..
T Consensus 447 ~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~~~ 524 (926)
T TIGR00580 447 SFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKERF 524 (926)
T ss_pred hCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 44667899999999999875 689999999999997666665554332 4679999999999999999887765
Q ss_pred CCccCCeeeEEEeecccCChhhhHH--------------HHhh-CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 84 GVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~i~--------------~~l~-~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
.. .+..++...+..........+. .++. +..+.+++++||||+|........ .++
T Consensus 525 ~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv~~~~---~L~------ 594 (926)
T TIGR00580 525 AN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVKQKE---KLK------ 594 (926)
T ss_pred cc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccchhHHH---HHH------
Confidence 42 2333333222111000000000 2222 235788999999999964322111 111
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhh-CCCC--eEEeC-Ccccc
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAK--AVHVQ-GRQFP 224 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~-~~~~--~~~~~-~~~~~ 224 (511)
.+. .++++++||||+.++.+...+ +... .+..+ ....+
T Consensus 595 ----------------------------------~~~----~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~ 636 (926)
T TIGR00580 595 ----------------------------------ELR----TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLP 636 (926)
T ss_pred ----------------------------------hcC----CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccc
Confidence 111 568999999999777665433 2222 22222 12234
Q ss_pred ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 010422 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (511)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 304 (511)
+..++.... . ......+.... ..+++++||||+.++++.+++.|.+... +..+..+||+|++++|.+
T Consensus 637 V~t~v~~~~-~---~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p-------~~~v~~lHG~m~~~eRe~ 703 (926)
T TIGR00580 637 VRTFVMEYD-P---ELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELVP-------EARIAIAHGQMTENELEE 703 (926)
T ss_pred eEEEEEecC-H---HHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCC-------CCeEEEecCCCCHHHHHH
Confidence 444443221 1 11112222222 2378999999999999999999987532 678999999999999999
Q ss_pred hcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEe
Q 010422 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (511)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (511)
+++.|++|+.+|||||+++++|+|+|++++||. ||+. ..+.++|.||+||+||.| .|.||.+
T Consensus 704 im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~---------~~gls~l~Qr~GRvGR~g~~g~aill 766 (926)
T TIGR00580 704 VMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERAD---------KFGLAQLYQLRGRVGRSKKKAYAYLL 766 (926)
T ss_pred HHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCC---------CCCHHHHHHHhcCCCCCCCCeEEEEE
Confidence 999999999999999999999999999999997 5531 234568999999999999 9999999
Q ss_pred cChh
Q 010422 384 YPEN 387 (511)
Q Consensus 384 ~~~~ 387 (511)
++..
T Consensus 767 ~~~~ 770 (926)
T TIGR00580 767 YPHQ 770 (926)
T ss_pred ECCc
Confidence 8643
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-33 Score=285.55 Aligned_cols=289 Identities=20% Similarity=0.310 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchh--chHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeE
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGY 93 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKT--t~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~ 93 (511)
.+-|+++++.+.+++++++..|||+||| +++|..+.. | ..+++.|.-.+...+.+.+.. .|.. ..+
T Consensus 19 R~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~------G-~TLVVSPLiSLM~DQV~~l~~-~Gi~----A~~ 86 (590)
T COG0514 19 RPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE------G-LTLVVSPLISLMKDQVDQLEA-AGIR----AAY 86 (590)
T ss_pred CCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC------C-CEEEECchHHHHHHHHHHHHH-cCce----eeh
Confidence 4469999999999999999999999999 777777762 3 577888888777666655432 2211 111
Q ss_pred EEeecccCChhhh--------------------------HHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHh
Q 010422 94 SIRFDDRTSTSTR--------------------------IKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (511)
Q Consensus 94 ~~~~~~~~~~~~~--------------------------i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~ 147 (511)
. .+..+..++ +.+.+. -..+.+++||||||.+.|.+.+..-++++...
T Consensus 87 l---nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~---~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l 160 (590)
T COG0514 87 L---NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLK---RLPISLVAIDEAHCISQWGHDFRPDYRRLGRL 160 (590)
T ss_pred h---hcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHH---hCCCceEEechHHHHhhcCCccCHhHHHHHHH
Confidence 1 111111110 111111 34578999999999999999888888877765
Q ss_pred hccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHH---HHhhhCCCC-eEEeCCccc
Q 010422 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFGCAK-AVHVQGRQF 223 (511)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~---l~~~~~~~~-~~~~~~~~~ 223 (511)
+... +++.++++|||.+... +.+-++-.. .+...+-.+
T Consensus 161 ~~~~--------------------------------------~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR 202 (590)
T COG0514 161 RAGL--------------------------------------PNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR 202 (590)
T ss_pred HhhC--------------------------------------CCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC
Confidence 5221 6789999999996654 444443322 222222222
Q ss_pred cccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 010422 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (511)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 303 (511)
| ++.|...+..+...... .+.. ......+..+|||.||+.++.++++|... ++.+..|||||+.++|.
T Consensus 203 p-Ni~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~ 270 (590)
T COG0514 203 P-NLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERE 270 (590)
T ss_pred c-hhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHH
Confidence 2 33333333222222222 2222 22445677999999999999999999986 89999999999999999
Q ss_pred hhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEE
Q 010422 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (511)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (511)
.+.+.|.++..+|+|||.++.+|||.|||++||| || .|.|.++|.|-+|||||.| +..|+.
T Consensus 271 ~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~----------lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 271 RVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YD----------LPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred HHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ec----------CCCCHHHHHHHHhhccCCCCcceEEE
Confidence 9999999999999999999999999999999999 88 6999999999999999999 999999
Q ss_pred ecChhhHh
Q 010422 383 LYPENEFD 390 (511)
Q Consensus 383 l~~~~~~~ 390 (511)
||++++..
T Consensus 333 l~~~~D~~ 340 (590)
T COG0514 333 LYSPEDIR 340 (590)
T ss_pred eeccccHH
Confidence 99988754
No 51
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=260.28 Aligned_cols=310 Identities=18% Similarity=0.237 Sum_probs=233.1
Q ss_pred hccCCCHHHHHHHHHHHh--cCCEEEEEcCCCCchhchHHHHHhhccc-cCCCeEEEEeCccHHHHHHHHHHHHHHhCCc
Q 010422 10 RKSLPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 86 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~--~~~~~~i~apTGsGKTt~~~~~l~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~ 86 (511)
.+.=.|.++|+.+++.+. ..++++..+.+|+|||+.+.+.++.+.- ......++|+.|++.++.|..+-+ .++|..
T Consensus 108 M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf 186 (477)
T KOG0332|consen 108 MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKF 186 (477)
T ss_pred hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCc
Confidence 344467889999998876 4578999999999999887777665432 112446778899999999998855 455655
Q ss_pred cCCeeeEEEeecccCChhhhH------------HHHh---hCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccc
Q 010422 87 LGQRVGYSIRFDDRTSTSTRI------------KEAL---LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (511)
Q Consensus 87 ~~~~vg~~~~~~~~~~~~~~i------------~~~l---~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~ 151 (511)
.+.+..|.++.. .......+ ..|. .--.+..+.++|+|||.
T Consensus 187 ~~ita~yair~s-k~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD----------------------- 242 (477)
T KOG0332|consen 187 TELTASYAIRGS-KAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD----------------------- 242 (477)
T ss_pred eeeeEEEEecCc-ccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-----------------------
Confidence 566777877633 22221111 1222 22346778999999995
Q ss_pred cCCCCCCCCCCCCchhhhc-cCCCCCCccccccccccCCCCccEEEeccCC--CHHHHH-hhhCCCCeEEeCCccc---c
Q 010422 152 ADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQGRQF---P 224 (511)
Q Consensus 152 ~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~-~~~~~~~~~~~~~~~~---~ 224 (511)
.|++ .++..+-..+...++ ++.|++++|||. ....|+ ....++..+.+..+.. +
T Consensus 243 ---------------~Mi~tqG~~D~S~rI~~~lP----~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~ 303 (477)
T KOG0332|consen 243 ---------------VMIDTQGFQDQSIRIMRSLP----RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDN 303 (477)
T ss_pred ---------------hhhhcccccccchhhhhhcC----CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccc
Confidence 4544 567777666776666 688999999998 334454 4556676776665543 3
Q ss_pred ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 010422 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (511)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 304 (511)
+..+|...+. .+..+..+++++..-.-|+.+|||.|++.+.+++..+.+. +..|..+||+|..++|..
T Consensus 304 IkQlyv~C~~---~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~ 371 (477)
T KOG0332|consen 304 IKQLYVLCAC---RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQRAA 371 (477)
T ss_pred hhhheeeccc---hhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHHHH
Confidence 4444444443 3445555566665556789999999999999999999987 999999999999999999
Q ss_pred hcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEe
Q 010422 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (511)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (511)
+.+.|+.|.-+|||+||+.+||+|++.|++||| ||-...... ..+.+.|+||+||+||.| .|.+|.+
T Consensus 372 ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN--------ydlP~~~~~----~pD~etYlHRiGRtGRFGkkG~a~n~ 439 (477)
T KOG0332|consen 372 IIDRFREGKEKVLITTNVCARGIDVAQVSVVVN--------YDLPVKYTG----EPDYETYLHRIGRTGRFGKKGLAINL 439 (477)
T ss_pred HHHHHhcCcceEEEEechhhcccccceEEEEEe--------cCCccccCC----CCCHHHHHHHhcccccccccceEEEe
Confidence 999999999999999999999999999999999 885544432 478899999999999999 9999998
Q ss_pred cChh
Q 010422 384 YPEN 387 (511)
Q Consensus 384 ~~~~ 387 (511)
+...
T Consensus 440 v~~~ 443 (477)
T KOG0332|consen 440 VDDK 443 (477)
T ss_pred eccc
Confidence 8543
No 52
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=293.93 Aligned_cols=421 Identities=17% Similarity=0.187 Sum_probs=277.3
Q ss_pred CHHHHHHHHHHHh-cCCEEEEEcCCCCchhchHHHHHhhccccC---------CCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 15 IASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCR---------DGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 15 ~~~~q~~~~~~l~-~~~~~~i~apTGsGKTt~~~~~l~~~~~~~---------~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
...+|..+..+.. ..+++++|||||+|||-.+..-+++....+ ..-+++++.|.+.+++.+...+.+...
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 5668888887765 456899999999999977666666543221 123688999999999888877665542
Q ss_pred CccCCeeeEEEeeccc------------CChhhhHHHHhhC----cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 85 VELGQRVGYSIRFDDR------------TSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~~------------~~~~~~i~~~l~~----~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
..|..|+-..+ +.. +.+.++...+... ...+-++++|+||+|
T Consensus 390 -~~GI~V~ElTg-D~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH-------------------- 447 (1674)
T KOG0951|consen 390 -PLGITVLELTG-DSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH-------------------- 447 (1674)
T ss_pred -ccCcEEEEecc-cccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh--------------------
Confidence 33444432221 111 1122222222222 234567899999998
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCcccccccccc---CCCCccEEEeccCC-CHHHHHhhhCCCC--eEEe--CC
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGR---KFAPLKLIIMSASL-DARGFSEYFGCAK--AVHV--QG 220 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~i~~SAT~-~~~~l~~~~~~~~--~~~~--~~ 220 (511)
|+...||+.+++++.+...+ ....+|++++|||+ |.++.+.|+...+ .+.+ .-
T Consensus 448 -------------------LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~sy 508 (1674)
T KOG0951|consen 448 -------------------LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSY 508 (1674)
T ss_pred -------------------hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCccc
Confidence 45555566665555555433 23689999999999 9999999987554 2333 34
Q ss_pred ccccccEEEcCCCCCchHHH--HHH-HHH-HHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhc----------C-----
Q 010422 221 RQFPVEILYTLYPEPDYLDA--TLI-TIF-QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ----------L----- 281 (511)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~-~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~----------~----- 281 (511)
|+.|+...|......+.+.+ +.+ ..+ ++......+++|||+.+|+++.+.|+.+++.+.+ -
T Consensus 509 RpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~e 588 (1674)
T KOG0951|consen 509 RPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASRE 588 (1674)
T ss_pred CcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhh
Confidence 55666666766554433322 122 222 2233344689999999999999999999855321 0
Q ss_pred -------------CCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecC
Q 010422 282 -------------PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348 (511)
Q Consensus 282 -------------~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~ 348 (511)
-++...+.++.||+||+..+|..+++.|++|.++|+|+|.++++|||.|+.+++|. .+..|||
T Consensus 589 ilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~p 664 (1674)
T KOG0951|consen 589 ILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDP 664 (1674)
T ss_pred hhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCc
Confidence 01234678999999999999999999999999999999999999999999999997 7899999
Q ss_pred CCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChhhHhh---ccCCCCC--cccccCccHHHHHHHHcCCCCC
Q 010422 349 VKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFDK---LEDSTKP--EIKRCNLSNVILQLKALGVDDI 420 (511)
Q Consensus 349 ~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~---~~~~~~p--ei~~~~l~~~~L~~~~~~~~~~ 420 (511)
..|.- .+.++.+.+||.|||||++ .|..+..-...+... +.....| +-.-..|...+-.-+.+|+.+.
T Consensus 665 ekg~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~ 740 (1674)
T KOG0951|consen 665 EKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSA 740 (1674)
T ss_pred ccCcc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhH
Confidence 98854 3789999999999999998 344444443333322 1112211 2122222222222222332211
Q ss_pred Cc-ccCC-----------------------CCC----CHHHHHHHHHHHHHcCCcCCC-----CCCCHHHHHHHccCCCC
Q 010422 421 IG-FDFM-----------------------EKP----SRASIIKSLEQLFLLGALTDD-----CKLSDPVGHQMARLPLD 467 (511)
Q Consensus 421 ~~-~~~~-----------------------~~p----~~~~l~~al~~L~~~g~l~~~-----~~~T~~lG~~~~~~~~~ 467 (511)
.. .+|+ +++ ..+.+.+|.-.|.+.|++--+ -+.|+ +|+..+.+++.
T Consensus 741 ~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~te-lg~ias~yyi~ 819 (1674)
T KOG0951|consen 741 RDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATE-LGRIASSYYIT 819 (1674)
T ss_pred HHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchh-hccccceeeee
Confidence 11 0111 111 124567889999999998433 36898 99999999999
Q ss_pred HHHHHHHHHhhhcCCHHH
Q 010422 468 PIYSKALIVAGQFNCLEE 485 (511)
Q Consensus 468 p~~~~~~~~~~~~~~~~~ 485 (511)
...+...-+.+...|.+.
T Consensus 820 ~~s~~~yn~~L~~~~~~i 837 (1674)
T KOG0951|consen 820 HGSMATYNELLKETMSEI 837 (1674)
T ss_pred cchHHHHHhhhhhhhccc
Confidence 888887777776666654
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.5e-34 Score=314.89 Aligned_cols=289 Identities=21% Similarity=0.249 Sum_probs=185.1
Q ss_pred EEcCCCCchhchHHHHHhhcccc-----------CCCeEEEEeCccHHHHHHHHHHHHHHh----------C-CccCCee
Q 010422 34 IVGETGSGKTTQLPQFLFHAGFC-----------RDGKLIGVTQPRRVAAVTVAKRVAEES----------G-VELGQRV 91 (511)
Q Consensus 34 i~apTGsGKTt~~~~~l~~~~~~-----------~~~~~i~~~~p~~~l~~~~~~~~~~~~----------~-~~~~~~v 91 (511)
|+||||||||..+.++++..... .++.+++++.|+++++.++.+++.... + ...+..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 58999999997666655544322 125689999999999999998765311 1 1123334
Q ss_pred eEEEeeccc---------------CChhhhHHHHhhC---cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccC
Q 010422 92 GYSIRFDDR---------------TSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (511)
Q Consensus 92 g~~~~~~~~---------------~~~~~~i~~~l~~---~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~ 153 (511)
+.... +.. +.+..++..++.. ..++++++|||||+|+.
T Consensus 81 ~vrtG-Dt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L----------------------- 136 (1490)
T PRK09751 81 GIRTG-DTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAV----------------------- 136 (1490)
T ss_pred EEEEC-CCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHh-----------------------
Confidence 32211 111 1222233333332 35889999999999942
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCC-CeEEeC-C--ccccccEE
Q 010422 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA-KAVHVQ-G--RQFPVEIL 228 (511)
Q Consensus 154 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~-~~~~~~-~--~~~~~~~~ 228 (511)
.+..+|.+++..+ +++......+.|+|++|||+ |.+++++|++.. +...+. . +..++.+.
T Consensus 137 ---~g~kRG~~Lel~L------------eRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~ 201 (1490)
T PRK09751 137 ---AGSKRGAHLALSL------------ERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIV 201 (1490)
T ss_pred ---cccccccHHHHHH------------HHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEE
Confidence 1222333333332 22222222568999999999 999999999754 322222 1 12222222
Q ss_pred EcCCCCCch---------------H----HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCC-------
Q 010422 229 YTLYPEPDY---------------L----DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP------- 282 (511)
Q Consensus 229 ~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~------- 282 (511)
.......+. . ......++... ...+++||||||++.|+.++..|.+...+..
T Consensus 202 vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~ 279 (1490)
T PRK09751 202 VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIA 279 (1490)
T ss_pred EecCchhhccccccccccccchhhhhhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhcccccccc
Confidence 111100000 0 01111222222 2367899999999999999999987532100
Q ss_pred ----------C-------CCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCccccee
Q 010422 283 ----------E-------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARL 345 (511)
Q Consensus 283 ----------~-------~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~ 345 (511)
. ......+..|||+|++++|..+++.|++|++++||||+++++|||++++++||+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq-------- 351 (1490)
T PRK09751 280 VDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ-------- 351 (1490)
T ss_pred chhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------
Confidence 0 001234678999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccceeeecCHHHHHHhccccCCCC--CCeEE
Q 010422 346 YDPVKGMESLLVVPISKAQALQRSGRAGREG--PGKCF 381 (511)
Q Consensus 346 yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~--~G~~~ 381 (511)
|+ .|.|.++|+||+|||||.. .++++
T Consensus 352 ~g----------sP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 352 VA----------TPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred eC----------CCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 66 5999999999999999975 34444
No 54
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=264.91 Aligned_cols=309 Identities=19% Similarity=0.270 Sum_probs=225.3
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchh--chHHHHHhhccc-----cCCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--t~~~~~l~~~~~-----~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
...-+|+|+|.++++-+.+|++++.+|.||+||| ++.|-++.-... ...+..++++.|++.++.++.-...++
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 4455789999999999999999999999999999 444444322211 223557889999999999988776665
Q ss_pred hCCccCCeeeEEEee------------cccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 83 SGVELGQRVGYSIRF------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 83 ~~~~~~~~vg~~~~~------------~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
.-.......-|.... +....++.++..+..+ ..+..+.++|+|||
T Consensus 318 syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEA--------------------- 376 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEA--------------------- 376 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecch---------------------
Confidence 533222222221110 0001112222233322 24778899999999
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHH-hhhCCCCeEEeCCcc---
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQGRQ--- 222 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~-~~~~~~~~~~~~~~~--- 222 (511)
|.|+|++|.+++..++-.+. ++.+.++.|||. ....++ .|+. .|.+.+.|..
T Consensus 377 -----------------DrMLDMgFEpqIrkilldiR----PDRqtvmTSATWP~~VrrLa~sY~K-ep~~v~vGsLdL~ 434 (629)
T KOG0336|consen 377 -----------------DRMLDMGFEPQIRKILLDIR----PDRQTVMTSATWPEGVRRLAQSYLK-EPMIVYVGSLDLV 434 (629)
T ss_pred -----------------hhhhcccccHHHHHHhhhcC----CcceeeeecccCchHHHHHHHHhhh-CceEEEeccccee
Confidence 68999999999999888877 899999999999 445666 4554 4444444433
Q ss_pred --ccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH
Q 010422 223 --FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (511)
Q Consensus 223 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~ 300 (511)
..+........+.+..+. +...+. ...+..+++|||..+..++.+..-+.-. ++..-.+||+-.+.
T Consensus 435 a~~sVkQ~i~v~~d~~k~~~-~~~f~~--~ms~ndKvIiFv~~K~~AD~LSSd~~l~---------gi~~q~lHG~r~Q~ 502 (629)
T KOG0336|consen 435 AVKSVKQNIIVTTDSEKLEI-VQFFVA--NMSSNDKVIIFVSRKVMADHLSSDFCLK---------GISSQSLHGNREQS 502 (629)
T ss_pred eeeeeeeeEEecccHHHHHH-HHHHHH--hcCCCceEEEEEechhhhhhccchhhhc---------ccchhhccCChhhh
Confidence 233444433333333322 222222 2234678999999998888776655433 88899999999999
Q ss_pred HHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCe
Q 010422 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (511)
Q Consensus 301 ~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~ 379 (511)
+|+..++.|++|..+||||||++.+|+|+|||++|+| || +|...++|+||+||+||+| .|.
T Consensus 503 DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yD----------FP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 503 DREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YD----------FPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred hHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--------cC----------CCccHHHHHHHhcccccCCCCcc
Confidence 9999999999999999999999999999999999999 99 8999999999999999999 999
Q ss_pred EEEecChhhHhh
Q 010422 380 CFRLYPENEFDK 391 (511)
Q Consensus 380 ~~~l~~~~~~~~ 391 (511)
.+.+++..+...
T Consensus 565 sis~lt~~D~~~ 576 (629)
T KOG0336|consen 565 SISFLTRNDWSM 576 (629)
T ss_pred eEEEEehhhHHH
Confidence 999999888765
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.6e-32 Score=291.93 Aligned_cols=296 Identities=19% Similarity=0.217 Sum_probs=200.0
Q ss_pred ccCCCHHHHHHHHHHHhcC------CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 11 KSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~------~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
..|.++++|++++..+..+ .+.+++||||||||..+..+++.... .+.+++++.|++.++.|..+.+.+...
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--~g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--AGYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 4566899999999999876 48999999999999766666655432 256789999999999999998877653
Q ss_pred CccCCeeeEEEeecccCChhhhHH--------------HHhh-CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 85 VELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~~~~~~~~i~--------------~~l~-~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
..+..++...+..........+. ..+. ...+.+++++|+||+|........ .+. ..
T Consensus 336 -~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~---~l~----~~- 406 (681)
T PRK10917 336 -PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQRL---ALR----EK- 406 (681)
T ss_pred -hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHHH---HHH----hc-
Confidence 23344444332111000001000 1122 234788999999999964322110 010 00
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHH-hhhCCCCeEEeC---Cccccc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKAVHVQ---GRQFPV 225 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~-~~~~~~~~~~~~---~~~~~~ 225 (511)
..++++++||||+.+..++ ..++......+. ....|+
T Consensus 407 ---------------------------------------~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i 447 (681)
T PRK10917 407 ---------------------------------------GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPI 447 (681)
T ss_pred ---------------------------------------CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCc
Confidence 0457899999999666654 233433322222 112234
Q ss_pred cEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCH--------HHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCC
Q 010422 226 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ--------EEIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (511)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~--------~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l 297 (511)
...+.... ..+..+..+.... ..+.+++||||.. ..++++++.|.+.+. ++.+..+||+|
T Consensus 448 ~~~~~~~~---~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~-------~~~v~~lHG~m 515 (681)
T PRK10917 448 TTVVIPDS---RRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP-------ELRVGLLHGRM 515 (681)
T ss_pred EEEEeCcc---cHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC-------CCcEEEEeCCC
Confidence 44333322 2233333333332 3467899999964 345566666665421 46799999999
Q ss_pred CHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-
Q 010422 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 376 (511)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~- 376 (511)
++++|.++++.|++|+.+|||||+++++|+|+|++++||+ ||+.. .+.+++.||+||+||.|
T Consensus 516 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~g~ 578 (681)
T PRK10917 516 KPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGRGAA 578 (681)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCC---------CCHHHHHHHhhcccCCCC
Confidence 9999999999999999999999999999999999999998 77421 34678999999999999
Q ss_pred CCeEEEecC
Q 010422 377 PGKCFRLYP 385 (511)
Q Consensus 377 ~G~~~~l~~ 385 (511)
+|.||.+++
T Consensus 579 ~g~~ill~~ 587 (681)
T PRK10917 579 QSYCVLLYK 587 (681)
T ss_pred ceEEEEEEC
Confidence 999999995
No 56
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-34 Score=259.69 Aligned_cols=304 Identities=17% Similarity=0.209 Sum_probs=225.2
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-CCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeee
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg 92 (511)
.|.|+|++.++-...|++++..|.+|+|||.....++++..-. ......+++.|+|+++.|..+. .+..++..+..+-
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqv-c~~lskh~~i~vm 185 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQV-CKELSKHLGIKVM 185 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHH-HHHHhcccCeEEE
Confidence 5789999999999999999999999999995555555554432 2355788899999999887764 3333333333222
Q ss_pred EEEeec--------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCC
Q 010422 93 YSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHS 156 (511)
Q Consensus 93 ~~~~~~--------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~ 156 (511)
...... -.+.++.++..+... ..+++...+|+|||
T Consensus 186 vttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA----------------------------- 236 (459)
T KOG0326|consen 186 VTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA----------------------------- 236 (459)
T ss_pred EecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh-----------------------------
Confidence 111111 112344555555443 35788899999999
Q ss_pred CCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCC--HHH-HHhhhCCCCeEEeCCcc--ccccEEEcC
Q 010422 157 NGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARG-FSEYFGCAKAVHVQGRQ--FPVEILYTL 231 (511)
Q Consensus 157 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~--~~~-l~~~~~~~~~~~~~~~~--~~~~~~~~~ 231 (511)
|.+++..|...++.++..++ +..|+++.|||.+ ... +.+++..+-.+..-... ..+..+|..
T Consensus 237 ---------DKlLs~~F~~~~e~li~~lP----~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYaf 303 (459)
T KOG0326|consen 237 ---------DKLLSVDFQPIVEKLISFLP----KERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAF 303 (459)
T ss_pred ---------hhhhchhhhhHHHHHHHhCC----ccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheee
Confidence 57888888888888888888 6789999999983 333 34566544333322221 234445544
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC
Q 010422 232 YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA 311 (511)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~ 311 (511)
..+.+.+- .+.++ .....-.+.+|||||.+.+|.+|+.+.+. ++.+..+|+.|.+++|.++|..|++
T Consensus 304 V~e~qKvh-CLntL---fskLqINQsIIFCNS~~rVELLAkKITel---------GyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 304 VEERQKVH-CLNTL---FSKLQINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred echhhhhh-hHHHH---HHHhcccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHHHHHhhhhhhhhhhhc
Confidence 33333222 22222 22333567999999999999999999987 9999999999999999999999999
Q ss_pred CCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhHh
Q 010422 312 GFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 390 (511)
Q Consensus 312 g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 390 (511)
|..+.+||||.+.+|||++++++||| || +|.+.++|+||+||+||.| .|.++.|++-++..
T Consensus 371 G~crnLVctDL~TRGIDiqavNvVIN--------FD----------fpk~aEtYLHRIGRsGRFGhlGlAInLityedrf 432 (459)
T KOG0326|consen 371 GKCRNLVCTDLFTRGIDIQAVNVVIN--------FD----------FPKNAETYLHRIGRSGRFGHLGLAINLITYEDRF 432 (459)
T ss_pred cccceeeehhhhhcccccceeeEEEe--------cC----------CCCCHHHHHHHccCCccCCCcceEEEEEehhhhh
Confidence 99999999999999999999999999 88 7999999999999999999 99999999877654
Q ss_pred h
Q 010422 391 K 391 (511)
Q Consensus 391 ~ 391 (511)
.
T Consensus 433 ~ 433 (459)
T KOG0326|consen 433 N 433 (459)
T ss_pred h
Confidence 3
No 57
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=8.1e-34 Score=263.95 Aligned_cols=315 Identities=19% Similarity=0.268 Sum_probs=227.3
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchh--chHHHHHhh--ccc-----cCCCeEEEEeCccHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFH--AGF-----CRDGKLIGVTQPRRVAAV 73 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKT--t~~~~~l~~--~~~-----~~~~~~i~~~~p~~~l~~ 73 (511)
.++.++......++++|-+-++.+..|++.+-+|-|||||| +.+|.+++. ... ...+...+++.|.|.++.
T Consensus 181 ~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELAr 260 (610)
T KOG0341|consen 181 LLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELAR 260 (610)
T ss_pred HHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHH
Confidence 35556666677899999999999999999999999999999 556666542 211 223667888999999999
Q ss_pred HHHHHHHHHhC------Cc---cCCeeeEEE----------eecccCChhhhHHHHhhCc--CCCCCCchhHhhhhhhhh
Q 010422 74 TVAKRVAEESG------VE---LGQRVGYSI----------RFDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTV 132 (511)
Q Consensus 74 ~~~~~~~~~~~------~~---~~~~vg~~~----------~~~~~~~~~~~i~~~l~~~--~l~~~~~iIiDE~H~r~~ 132 (511)
|...-+..+.. .. ....+|... ..+-.+.+..++..++... .+.-..++.+||+
T Consensus 261 Qt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEA----- 335 (610)
T KOG0341|consen 261 QTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEA----- 335 (610)
T ss_pred HHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhH-----
Confidence 88875544321 10 011222110 0111233444555555432 2445688999999
Q ss_pred hhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHHhhh
Q 010422 133 HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEYF 210 (511)
Q Consensus 133 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~~~~ 210 (511)
|+|+|++|...+..++..+. ...|.+++|||++. +.|++--
T Consensus 336 ---------------------------------DRmiDmGFEddir~iF~~FK----~QRQTLLFSATMP~KIQ~FAkSA 378 (610)
T KOG0341|consen 336 ---------------------------------DRMIDMGFEDDIRTIFSFFK----GQRQTLLFSATMPKKIQNFAKSA 378 (610)
T ss_pred ---------------------------------HHHhhccchhhHHHHHHHHh----hhhheeeeeccccHHHHHHHHhh
Confidence 68999999999999998887 66799999999943 3454332
Q ss_pred CCCCeEEeCCccccccEEEcCCCCCchHH--HHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCe
Q 010422 211 GCAKAVHVQGRQFPVEILYTLYPEPDYLD--ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 288 (511)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 288 (511)
-..|+...-|+.-.-+..... +.+|+. +.+..++.... ....++||||..+.+++.++++|--. +.
T Consensus 379 LVKPvtvNVGRAGAAsldViQ--evEyVkqEaKiVylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLlK---------GV 446 (610)
T KOG0341|consen 379 LVKPVTVNVGRAGAASLDVIQ--EVEYVKQEAKIVYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLK---------GV 446 (610)
T ss_pred cccceEEecccccccchhHHH--HHHHHHhhhhhhhHHHHhc-cCCCceEEEeccccChHHHHHHHHHc---------cc
Confidence 223333333333221111111 112222 22333333333 33678999999999999999988654 88
Q ss_pred EEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHh
Q 010422 289 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQR 368 (511)
Q Consensus 289 ~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr 368 (511)
.+..+|||-++++|...++.|+.|+.+|+||||++..|+|+|++.+||| || .|...++|+||
T Consensus 447 EavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yD----------MP~eIENYVHR 508 (610)
T KOG0341|consen 447 EAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YD----------MPEEIENYVHR 508 (610)
T ss_pred eeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--------CC----------ChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 99 89999999999
Q ss_pred ccccCCCC-CCeEEEecChhhH
Q 010422 369 SGRAGREG-PGKCFRLYPENEF 389 (511)
Q Consensus 369 ~GRaGR~~-~G~~~~l~~~~~~ 389 (511)
+||+||.| .|.+..++++...
T Consensus 509 IGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 509 IGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred hcccCCCCCcceeeeeecccch
Confidence 99999999 8999999987644
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=8.5e-32 Score=286.21 Aligned_cols=298 Identities=18% Similarity=0.208 Sum_probs=195.9
Q ss_pred ccCCCHHHHHHHHHHHhcC------CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 11 KSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~------~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
..|.+++.|++++..+..+ .+.+++||||||||..+..+++.... .+.+++++.|+++++.|..+.+.+...
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--~g~qvlilaPT~~LA~Q~~~~~~~l~~ 309 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--AGYQVALMAPTEILAEQHYNSLRNLLA 309 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--cCCcEEEECCHHHHHHHHHHHHHHHhc
Confidence 3456899999999998766 36899999999999766555554432 255789999999999999998877654
Q ss_pred CccCCeeeEEEeecccCChhhhHH---------------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 85 VELGQRVGYSIRFDDRTSTSTRIK---------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~~~~~~~~i~---------------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
. .+..++..............+. .+.....+.+++++|+||+|........ .+..
T Consensus 310 ~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~---~l~~------ 379 (630)
T TIGR00643 310 P-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRK---KLRE------ 379 (630)
T ss_pred c-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHH---HHHH------
Confidence 2 2334443322111100000111 1111234678999999999964332111 1110
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHh-hhCCCCeEEe---CCccccc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSE-YFGCAKAVHV---QGRQFPV 225 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~-~~~~~~~~~~---~~~~~~~ 225 (511)
.... ..++++++||||+.++.++. .++......+ +....|+
T Consensus 380 ---------------------~~~~--------------~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i 424 (630)
T TIGR00643 380 ---------------------KGQG--------------GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPI 424 (630)
T ss_pred ---------------------hccc--------------CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCce
Confidence 0000 02568999999986665542 2232221111 1112344
Q ss_pred cEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHH--------HHHHHHHHHHHHHhcCCCCCCCeEEEEccCCC
Q 010422 226 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQE--------EIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (511)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~--------~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l 297 (511)
...+.... ..+..+..+.... ..+.+++|||+..+ .++.+++.|.+.+ .++.+..+||+|
T Consensus 425 ~~~~~~~~---~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m 492 (630)
T TIGR00643 425 TTVLIKHD---EKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRM 492 (630)
T ss_pred EEEEeCcc---hHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCC
Confidence 44433222 1233333332222 23678999999763 4556666665542 267899999999
Q ss_pred CHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-
Q 010422 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 376 (511)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~- 376 (511)
++++|..+++.|++|+.+|||||+++++|||+|++++||. ||+. ..+.+++.||+||+||.|
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~---------r~gls~lhQ~~GRvGR~g~ 555 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAE---------RFGLSQLHQLRGRVGRGDH 555 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCC---------cCCHHHHHHHhhhcccCCC
Confidence 9999999999999999999999999999999999999998 6632 235678999999999999
Q ss_pred CCeEEEec
Q 010422 377 PGKCFRLY 384 (511)
Q Consensus 377 ~G~~~~l~ 384 (511)
.|.||.++
T Consensus 556 ~g~~il~~ 563 (630)
T TIGR00643 556 QSYCLLVY 563 (630)
T ss_pred CcEEEEEE
Confidence 99999998
No 59
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.3e-32 Score=298.72 Aligned_cols=297 Identities=18% Similarity=0.196 Sum_probs=198.7
Q ss_pred hccCCCHHHHHHHHHHHhcC------CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 10 RKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~------~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
...|.+++.|.++++.+..+ .+++++||||||||.++..+++.... .+.+++++.|++.++.|+.+.+.+..
T Consensus 596 ~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--~g~qvlvLvPT~eLA~Q~~~~f~~~~ 673 (1147)
T PRK10689 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--NHKQVAVLVPTTLLAQQHYDNFRDRF 673 (1147)
T ss_pred hCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 44567899999999999887 78999999999999665444433322 35679999999999999999887655
Q ss_pred CCccCCeeeEEEeecccCChhhhHH--------------HHhh-CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 84 GVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~i~--------------~~l~-~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
.. .+..++...++.+.......+. .++. +..+.+++++||||+|+...... . .
T Consensus 674 ~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~~---e---~----- 741 (1147)
T PRK10689 674 AN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHK---E---R----- 741 (1147)
T ss_pred cc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhHH---H---H-----
Confidence 32 2233333222111100000010 1222 22467899999999996432211 0 0
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHH---hhhCCCCeEEeCCc-ccc
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGCAKAVHVQGR-QFP 224 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~---~~~~~~~~~~~~~~-~~~ 224 (511)
+..+. .++++++||||+.++.+. ..+.+...+..+.. ..+
T Consensus 742 --------------------------------lk~l~----~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~ 785 (1147)
T PRK10689 742 --------------------------------IKAMR----ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 (1147)
T ss_pred --------------------------------HHhcC----CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCC
Confidence 11111 678999999998655443 22233333333221 233
Q ss_pred ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 010422 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (511)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 304 (511)
+.......... .....++.... .+++++||||+++.++.+++.|.+.+. +..+..+||+|++++|.+
T Consensus 786 v~~~~~~~~~~----~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p-------~~~v~~lHG~m~q~eRe~ 852 (1147)
T PRK10689 786 VKTFVREYDSL----VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVP-------EARIAIGHGQMRERELER 852 (1147)
T ss_pred ceEEEEecCcH----HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCC-------CCcEEEEeCCCCHHHHHH
Confidence 43333221111 11112222121 268899999999999999999987642 567888999999999999
Q ss_pred hcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEe
Q 010422 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (511)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (511)
++..|++|+.+|||||+++++|+|+|++++||. +++. ..+.++|+||+||+||.| .|.||.+
T Consensus 853 im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--------~~ad---------~fglaq~~Qr~GRvGR~g~~g~a~ll 915 (1147)
T PRK10689 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERAD---------HFGLAQLHQLRGRVGRSHHQAYAWLL 915 (1147)
T ss_pred HHHHHHhcCCCEEEECchhhcccccccCCEEEE--------ecCC---------CCCHHHHHHHhhccCCCCCceEEEEE
Confidence 999999999999999999999999999999994 2211 234467999999999999 9999999
Q ss_pred cCh
Q 010422 384 YPE 386 (511)
Q Consensus 384 ~~~ 386 (511)
++.
T Consensus 916 ~~~ 918 (1147)
T PRK10689 916 TPH 918 (1147)
T ss_pred eCC
Confidence 853
No 60
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=278.83 Aligned_cols=321 Identities=18% Similarity=0.226 Sum_probs=232.9
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
-.|.+..+|++++..+.+|..++|.|+|.+|||.++..++.-... .+.+.+++.|.+++-.|-.+.+...++ .+|..
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--h~TR~iYTSPIKALSNQKfRDFk~tF~-DvgLl 370 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--HMTRTIYTSPIKALSNQKFRDFKETFG-DVGLL 370 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--hccceEecchhhhhccchHHHHHHhcc-cccee
Confidence 456789999999999999999999999999999777766544321 256899999999999998888777665 34444
Q ss_pred eeEEEeecccC----ChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCC
Q 010422 91 VGYSIRFDDRT----STSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNEN 164 (511)
Q Consensus 91 vg~~~~~~~~~----~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~ 164 (511)
+|- ++..... .+.+-++.++.+ ..++++++||+||+|
T Consensus 371 TGD-vqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH------------------------------------ 413 (1248)
T KOG0947|consen 371 TGD-VQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH------------------------------------ 413 (1248)
T ss_pred ecc-eeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee------------------------------------
Confidence 442 1222111 122223344433 357889999999999
Q ss_pred chhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCC-----eEEeCCccccccEEEcCCCC----
Q 010422 165 SDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAK-----AVHVQGRQFPVEILYTLYPE---- 234 (511)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---- 234 (511)
++-|..||..|++++..++ .++++|++|||+ |+.+|++|.|..+ ++....|+.|++.+.....+
T Consensus 414 --YiND~eRGvVWEEViIMlP----~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~ki 487 (1248)
T KOG0947|consen 414 --YINDVERGVVWEEVIIMLP----RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKI 487 (1248)
T ss_pred --ecccccccccceeeeeecc----ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehh
Confidence 7889999999999999999 788999999999 9999999998542 23333455555443221100
Q ss_pred ----CchH-----------------------------------------------------H---HHHHHHHHHhhcCCC
Q 010422 235 ----PDYL-----------------------------------------------------D---ATLITIFQVHLDEAP 254 (511)
Q Consensus 235 ----~~~~-----------------------------------------------------~---~~~~~~~~~~~~~~~ 254 (511)
..++ . ..+..++.......-
T Consensus 488 idq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~l 567 (1248)
T KOG0947|consen 488 IDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNL 567 (1248)
T ss_pred hcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhccc
Confidence 0000 0 012223333344446
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHh------------------cCCCCCC------------CeEEEEccCCCCHHHHHh
Q 010422 255 GDILVFLTGQEEIESVERLVQERLL------------------QLPEASR------------KLVTVPIFSSLPSEQQMR 304 (511)
Q Consensus 255 ~~~LVF~~s~~~~~~l~~~l~~~~~------------------~~~~~~~------------~~~v~~lh~~l~~~~r~~ 304 (511)
-|++|||-|++.|++.++.|...-- .+..... .-.++.||||+-+--++-
T Consensus 568 LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 568 LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 6899999999999999999865311 1111111 225788899999999999
Q ss_pred hcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEE
Q 010422 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCF 381 (511)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~ 381 (511)
|+..|..|-+||++||.++++|||+|+.++|++ ..+.+|... ..-..+-+|.||+|||||.| .|.++
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~----Sl~KhDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVi 717 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFS----SLRKHDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVI 717 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEee----ehhhccCcc------eeecCChhHHhhhccccccccCcCceEE
Confidence 999999999999999999999999999999987 334455332 24578899999999999999 79988
Q ss_pred EecChh
Q 010422 382 RLYPEN 387 (511)
Q Consensus 382 ~l~~~~ 387 (511)
.+.+..
T Consensus 718 i~~~~~ 723 (1248)
T KOG0947|consen 718 IMCKDS 723 (1248)
T ss_pred EEecCC
Confidence 888554
No 61
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=274.64 Aligned_cols=321 Identities=18% Similarity=0.217 Sum_probs=238.8
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
.|.+.++|..++..+.+++.++|+|.|.+|||.++..++...... +.+++++.|.+++..|-.+.+..+++ .+|..+
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMT 203 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFK-DVGLMT 203 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhc-ccceee
Confidence 445789999999999999999999999999998887777665544 56799999999999999988888875 566666
Q ss_pred eEEEeec--cc-CChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCch
Q 010422 92 GYSIRFD--DR-TSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSD 166 (511)
Q Consensus 92 g~~~~~~--~~-~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 166 (511)
|-..-.. ++ +.+.+-+..++.. ..+..+.++|+||+|
T Consensus 204 GDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-------------------------------------- 245 (1041)
T KOG0948|consen 204 GDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-------------------------------------- 245 (1041)
T ss_pred cceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh--------------------------------------
Confidence 6432211 11 1222223344433 347789999999999
Q ss_pred hhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhC-----CCCeEEeCCccccccEEEcCC--------
Q 010422 167 MILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLY-------- 232 (511)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------- 232 (511)
+|-|..||..|++.+.-++ .++|.|.+|||+ |+..|++|.. .+.++..+-++-|++.+..+.
T Consensus 246 YMRDkERGVVWEETIIllP----~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylv 321 (1041)
T KOG0948|consen 246 YMRDKERGVVWEETIILLP----DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLV 321 (1041)
T ss_pred hccccccceeeeeeEEecc----ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEE
Confidence 8999999999999999998 789999999999 9999999983 233444445555554442221
Q ss_pred --CCCchHHHHHH--------------------------------------HHHHHhhcCCCCcEEEEcCCHHHHHHHHH
Q 010422 233 --PEPDYLDATLI--------------------------------------TIFQVHLDEAPGDILVFLTGQEEIESVER 272 (511)
Q Consensus 233 --~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~LVF~~s~~~~~~l~~ 272 (511)
...++-+..+. .++.........+++||+-|+++|+..|.
T Consensus 322 VDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Al 401 (1041)
T KOG0948|consen 322 VDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYAL 401 (1041)
T ss_pred EecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHH
Confidence 11112122111 12222223335689999999999999998
Q ss_pred HHHHHHh------------------cCCCCCC------------CeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccc
Q 010422 273 LVQERLL------------------QLPEASR------------KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 322 (511)
Q Consensus 273 ~l~~~~~------------------~~~~~~~------------~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~ 322 (511)
.+.+.-- .+..+.. .-++..||||+-+--++.|+-.|.+|-+|+|+||.+
T Consensus 402 qm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATET 481 (1041)
T KOG0948|consen 402 QMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATET 481 (1041)
T ss_pred hhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhh
Confidence 8765311 1222211 225777899999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChh
Q 010422 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (511)
Q Consensus 323 ~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 387 (511)
++.|+|+|+-++|.- ..+.||.. ...|+|--+|+||.|||||.| .|.|+.++.+.
T Consensus 482 FsiGLNMPAkTVvFT----~~rKfDG~------~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 482 FSIGLNMPAKTVVFT----AVRKFDGK------KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred hhhccCCcceeEEEe----eccccCCc------ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 999999999998885 45556643 337999999999999999999 79999999654
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.98 E-value=2.9e-31 Score=279.53 Aligned_cols=294 Identities=16% Similarity=0.162 Sum_probs=181.0
Q ss_pred ccCCCHHHHHHHHHHHhcCC-EEEEEcCCCCchhchHHHHHhhccccCC-CeEEEEeCccHHHHHHHHHHHHHHhCCc--
Q 010422 11 KSLPIASVEKRLVEEVRKND-ILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGVE-- 86 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~-~~~i~apTGsGKTt~~~~~l~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~-- 86 (511)
..+.++++|+++++.+..|+ ++++.+|||||||..+..+++....... ..+++++.|+|+++.|+.+.+.+.....
T Consensus 12 ~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 12 HGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred hCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 35679999999999999998 5777899999999655444442222221 3367778899999999988765443211
Q ss_pred --------------------cCCeeeEEEeecccCChhh-----------hHHHHhhCc-----------------CCCC
Q 010422 87 --------------------LGQRVGYSIRFDDRTSTST-----------RIKEALLDP-----------------YLSR 118 (511)
Q Consensus 87 --------------------~~~~vg~~~~~~~~~~~~~-----------~i~~~l~~~-----------------~l~~ 118 (511)
....+....+......... .+..+.... .+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 0111221111111100000 011111111 2578
Q ss_pred CCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEec
Q 010422 119 YSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMS 198 (511)
Q Consensus 119 ~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 198 (511)
++++|+||||......+.+..+++... + + ....+.|+++||
T Consensus 172 v~~LVLDEADLd~gF~~~l~~Il~~l~--r------------------------------------p-~~~rprQtLLFS 212 (844)
T TIGR02621 172 DALIVHDEAHLEPAFQELLKQIMNEQQ--R------------------------------------P-PDFLPLRVVELT 212 (844)
T ss_pred ceEEEEehhhhccccHHHHHHHHHhcc--c------------------------------------C-cccccceEEEEe
Confidence 999999999954443333333333210 0 0 000246999999
Q ss_pred cCCCH--HHHHhhhC-CCCeEEeCCccccc--cEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHH
Q 010422 199 ASLDA--RGFSEYFG-CAKAVHVQGRQFPV--EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERL 273 (511)
Q Consensus 199 AT~~~--~~l~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~ 273 (511)
||++. ..+...+. +...+.+....... ...+............+..+.... ...++++||||||++.++.+++.
T Consensus 213 AT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~ 291 (844)
T TIGR02621 213 ATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAK 291 (844)
T ss_pred cCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHH
Confidence 99943 34444443 22222322221111 112222222222333333333333 23468899999999999999999
Q ss_pred HHHHHhcCCCCCCCeEEEEccCCCCHHHHH-----hhcCcCCC----CC-------eEEEEeccccccCCCCCCeEEEEe
Q 010422 274 VQERLLQLPEASRKLVTVPIFSSLPSEQQM-----RVFAPAAA----GF-------RKVILATNIAETSVTIPGIKYVID 337 (511)
Q Consensus 274 l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~-----~i~~~f~~----g~-------~~vlvaT~~~~~Gvdip~v~~VI~ 337 (511)
|.+. ++ ..+||+|++.+|. ++++.|++ |. .+|||||+++|+|+||+. ++||+
T Consensus 292 L~~~---------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~ 359 (844)
T TIGR02621 292 LPKE---------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC 359 (844)
T ss_pred HHhc---------CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE
Confidence 9764 43 7899999999999 77888876 43 689999999999999987 77775
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
++ .+.++|+||+||+||.|
T Consensus 360 --------d~------------aP~esyIQRiGRtgR~G 378 (844)
T TIGR02621 360 --------DL------------APFESMQQRFGRVNRFG 378 (844)
T ss_pred --------CC------------CCHHHHHHHhcccCCCC
Confidence 32 34689999999999998
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=6.2e-31 Score=263.75 Aligned_cols=284 Identities=19% Similarity=0.199 Sum_probs=176.2
Q ss_pred EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEE------ee-------
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI------RF------- 97 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~------~~------- 97 (511)
+++|+||||||||.++..+++.......+.+++++.|++.++.++.+++...++...+...+... ..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 47899999999998888888766444445689999999999999999988876643221111000 00
Q ss_pred ---------------cccCChhhhHHHHhhCcC--------CCCCCchhHhhhhhhhhhhH-HHHHHHHHHHHhhccccC
Q 010422 98 ---------------DDRTSTSTRIKEALLDPY--------LSRYSAIIVDEAHERTVHTD-VLLGLLKKVQNARSKSAD 153 (511)
Q Consensus 98 ---------------~~~~~~~~~i~~~l~~~~--------l~~~~~iIiDE~H~r~~~~~-~ll~~l~~~~~~~~~~~~ 153 (511)
.-...+...+...+.... .-..+++|+||+|....... .+..+++.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~----- 153 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--D----- 153 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--H-----
Confidence 000011111111111100 01237899999997664432 2222232221 1
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCC--cccc---ccEE
Q 010422 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQG--RQFP---VEIL 228 (511)
Q Consensus 154 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~--~~~~---~~~~ 228 (511)
.+.|+++||||++ +.+.+|+.......... ...+ ...+
T Consensus 154 ------------------------------------~~~~~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (358)
T TIGR01587 154 ------------------------------------NDVPILLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERH 196 (358)
T ss_pred ------------------------------------cCCCEEEEecCch-HHHHHHHhcCCCcccccCCCCccccccccc
Confidence 5679999999995 44556653321110000 0000 0001
Q ss_pred Ec--CCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh--
Q 010422 229 YT--LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR-- 304 (511)
Q Consensus 229 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~-- 304 (511)
.. ...........+..++... ..++++||||+|+++++.+++.|.+... ...+..+||++++.+|.+
T Consensus 197 ~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~-------~~~~~~~h~~~~~~~r~~~~ 267 (358)
T TIGR01587 197 RFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAP-------EEEIMLLHSRFTEKDRAKKE 267 (358)
T ss_pred cceeeccccccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcC-------CCeEEEEECCCCHHHHHHHH
Confidence 00 0111111112222222222 2468999999999999999999987521 236899999999999976
Q ss_pred --hcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC--C---
Q 010422 305 --VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG--P--- 377 (511)
Q Consensus 305 --i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~--~--- 377 (511)
+++.|++|..+|||||+++++|+|+| +++||+ | +.+.++|+||+||+||.| .
T Consensus 268 ~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~------------~~~~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 268 AELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------E------------LAPIDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred HHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE--------c------------CCCHHHHHHHhccccCCCCCCCCC
Confidence 47899999999999999999999996 677776 3 355789999999999988 2
Q ss_pred CeEEEecChhh
Q 010422 378 GKCFRLYPENE 388 (511)
Q Consensus 378 G~~~~l~~~~~ 388 (511)
|.+|.+....+
T Consensus 327 ~~~~v~~~~~~ 337 (358)
T TIGR01587 327 FEVYIITIAPE 337 (358)
T ss_pred CeEEEEeecCC
Confidence 36777765543
No 64
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.5e-34 Score=274.37 Aligned_cols=319 Identities=20% Similarity=0.280 Sum_probs=216.4
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcC-CEEEEEcCCCCchhchHHHHHhhcc---------c---cCC--CeEEEEeCc
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAG---------F---CRD--GKLIGVTQP 67 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~-~~~~i~apTGsGKTt~~~~~l~~~~---------~---~~~--~~~i~~~~p 67 (511)
+++.++...+..|+++|.-.+++...| .+++-.|.||||||..+.+++.+.. . ... +...+++.|
T Consensus 192 iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tP 271 (731)
T KOG0347|consen 192 ILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTP 271 (731)
T ss_pred HHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecC
Confidence 466677778888999999999999888 6888999999999976666665521 1 111 224889999
Q ss_pred cHHHHHHHHHHHHHHh---CCccCCeeeEE----------EeecccCChhhhHHHHhhC-----cCCCCCCchhHhhhhh
Q 010422 68 RRVAAVTVAKRVAEES---GVELGQRVGYS----------IRFDDRTSTSTRIKEALLD-----PYLSRYSAIIVDEAHE 129 (511)
Q Consensus 68 ~~~l~~~~~~~~~~~~---~~~~~~~vg~~----------~~~~~~~~~~~~i~~~l~~-----~~l~~~~~iIiDE~H~ 129 (511)
+|+++.|+.+.+.... +..+...+|.. -+.+..+.++.++.+++.. ..+.++.++|+||++
T Consensus 272 TRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD- 350 (731)
T KOG0347|consen 272 TRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD- 350 (731)
T ss_pred hHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-
Confidence 9999999988765433 22222223311 0122233445555555543 236788999999995
Q ss_pred hhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCcccccccc-ccCCCCccEEEeccCCCHHHHHh
Q 010422 130 RTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ-GRKFAPLKLIIMSASLDARGFSE 208 (511)
Q Consensus 130 r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~i~~SAT~~~~~l~~ 208 (511)
+|+..+.-..+..++..+. ...+...|.+.+|||+.......
T Consensus 351 -------------------------------------RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~ 393 (731)
T KOG0347|consen 351 -------------------------------------RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQP 393 (731)
T ss_pred -------------------------------------HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcCh
Confidence 4444444444444444444 23336679999999983322111
Q ss_pred h---h-CCCC-------------eEEeCCccccccEEEcCCCCCchHHHHHHHHHH-----------HhhcCCCCcEEEE
Q 010422 209 Y---F-GCAK-------------AVHVQGRQFPVEILYTLYPEPDYLDATLITIFQ-----------VHLDEAPGDILVF 260 (511)
Q Consensus 209 ~---~-~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~LVF 260 (511)
. - +..+ .+.+.+. | . .....+.........+..+. .....-+|.+|||
T Consensus 394 ~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k--p-k-iiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF 469 (731)
T KOG0347|consen 394 LSSSRKKKDKEDELNAKIQHLMKKIGFRGK--P-K-IIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVF 469 (731)
T ss_pred hHHhhhccchhhhhhHHHHHHHHHhCccCC--C-e-eEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEE
Confidence 0 0 0000 0001111 0 0 11111111111111111111 1122338999999
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCc
Q 010422 261 LTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGF 340 (511)
Q Consensus 261 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~ 340 (511)
||+.+.+..++-.|... ++...++|+.|.+.+|.+.++.|++..--||||||+|++|+|||+|.+||+
T Consensus 470 ~NsId~vKRLt~~L~~L---------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--- 537 (731)
T KOG0347|consen 470 CNSIDCVKRLTVLLNNL---------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--- 537 (731)
T ss_pred echHHHHHHHHHHHhhc---------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE---
Confidence 99999999999999876 888999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhHh
Q 010422 341 VKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 390 (511)
Q Consensus 341 ~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 390 (511)
|. .|-+.+.|+||.||++|++ .|..+.++.+.+..
T Consensus 538 -----Yq----------VPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 538 -----YQ----------VPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred -----ee----------cCCccceeEecccccccccCCCeEEEEeChHHhH
Confidence 77 7899999999999999999 99999999876643
No 65
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=4e-30 Score=249.00 Aligned_cols=311 Identities=17% Similarity=0.193 Sum_probs=207.0
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
..+.++.||..+......+ |++++.|||=|||+.+...+.......++ .++++.|++-++.|.+..+.+..+......
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 3456788999998887766 89999999999998888888766665556 899999999999999999999888765544
Q ss_pred eeEEEeecccCChhhhHH-----------------HHhh-CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcccc
Q 010422 91 VGYSIRFDDRTSTSTRIK-----------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (511)
Q Consensus 91 vg~~~~~~~~~~~~~~i~-----------------~~l~-~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~ 152 (511)
+... +.+....+-. .++. .-.+.++.++|+||||. .........+.+......
T Consensus 90 ~~lt----Gev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHR-AvGnyAYv~Va~~y~~~~---- 160 (542)
T COG1111 90 AALT----GEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHR-AVGNYAYVFVAKEYLRSA---- 160 (542)
T ss_pred eeec----CCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhh-ccCcchHHHHHHHHHHhc----
Confidence 4322 2222222222 1221 12467889999999994 333333333344333322
Q ss_pred CCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhhhCCCC--eEEeC--Cc-----
Q 010422 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAK--AVHVQ--GR----- 221 (511)
Q Consensus 153 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~~~~~~--~~~~~--~~----- 221 (511)
.++++++||||+ +.+.+.+...+-. .+.+. .+
T Consensus 161 -------------------------------------k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~ 203 (542)
T COG1111 161 -------------------------------------KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRP 203 (542)
T ss_pred -------------------------------------cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHH
Confidence 788999999999 7777765543211 01110 00
Q ss_pred -cccccEEEcCCC------------------------------------------------------CC-----------
Q 010422 222 -QFPVEILYTLYP------------------------------------------------------EP----------- 235 (511)
Q Consensus 222 -~~~~~~~~~~~~------------------------------------------------------~~----------- 235 (511)
....++.+.... ..
T Consensus 204 Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~ 283 (542)
T COG1111 204 YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAE 283 (542)
T ss_pred hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 000111111100 00
Q ss_pred --------------------chHH--------------------------------------------HHHHHHHHHhhc
Q 010422 236 --------------------DYLD--------------------------------------------ATLITIFQVHLD 251 (511)
Q Consensus 236 --------------------~~~~--------------------------------------------~~~~~~~~~~~~ 251 (511)
.|+. .....+......
T Consensus 284 ~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k 363 (542)
T COG1111 284 AIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEK 363 (542)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhc
Confidence 0000 000111112223
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCC
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG 331 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~ 331 (511)
.++.+++||++.|+.++.+...|.+..........+-.-.....||++.+|.++++.|++|..+|||||+++|.|+|||+
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~ 443 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPE 443 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCc
Confidence 44678999999999999999999876221000000000011236899999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChh
Q 010422 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 387 (511)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 387 (511)
++.||- ||| -.|..-++||.||+||...|.+|.|+++.
T Consensus 444 vDlVif--------YEp----------vpSeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 444 VDLVIF--------YEP----------VPSEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred ccEEEE--------ecC----------CcHHHHHHHhhCccccCCCCeEEEEEecC
Confidence 999998 884 56778899999999999999999999776
No 66
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.9e-31 Score=255.96 Aligned_cols=305 Identities=20% Similarity=0.272 Sum_probs=225.9
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc-----c-CCCeEEEEeCccHHHHHHHHHHHHHHhCCc
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-----C-RDGKLIGVTQPRRVAAVTVAKRVAEESGVE 86 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~-----~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~ 86 (511)
..++++|.++++....|++++-+|.||||||..+...++.+.. . ..+...+++.|++.++.|+.... +.++..
T Consensus 244 ~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~ea-Kkf~K~ 322 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEA-KKFGKA 322 (731)
T ss_pred ccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHH-HHhhhh
Confidence 4588899999999999999999999999999555444433322 2 34667889999999999998764 444434
Q ss_pred cCCeeeEEEeecc--------------cCChhhhHHHHhh--CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcc
Q 010422 87 LGQRVGYSIRFDD--------------RTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (511)
Q Consensus 87 ~~~~vg~~~~~~~--------------~~~~~~~i~~~l~--~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~ 150 (511)
++..+....+..+ .+.+..++..++. ...+.+++++|+||+
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEa----------------------- 379 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEA----------------------- 379 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEech-----------------------
Confidence 4433322211111 1233444443332 245788999999999
Q ss_pred ccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHH-hhhCCCCeEEeCCcc----c
Q 010422 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQGRQ----F 223 (511)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~-~~~~~~~~~~~~~~~----~ 223 (511)
|+|++.+|.+++..+...+. ++.|.+++|||. ..+.++ +++++ |+-.+.+.. .
T Consensus 380 ---------------drmfdmGfe~qVrSI~~hir----pdrQtllFsaTf~~kIe~lard~L~d-pVrvVqg~vgean~ 439 (731)
T KOG0339|consen 380 ---------------DRMFDMGFEPQVRSIKQHIR----PDRQTLLFSATFKKKIEKLARDILSD-PVRVVQGEVGEANE 439 (731)
T ss_pred ---------------hhhhccccHHHHHHHHhhcC----CcceEEEeeccchHHHHHHHHHHhcC-CeeEEEeehhcccc
Confidence 68999999999888888877 889999999999 556666 45554 333333221 1
Q ss_pred cccEEEcCCCCCchHHHHHHHHH-HHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 010422 224 PVEILYTLYPEPDYLDATLITIF-QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (511)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r 302 (511)
.+.......+.. +..+..++ ++......|++|+|+.-+.++++++..|.-. ++.+..+||++.+.+|
T Consensus 440 dITQ~V~V~~s~---~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdkdqa~r 507 (731)
T KOG0339|consen 440 DITQTVSVCPSE---EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDKDQAER 507 (731)
T ss_pred chhheeeeccCc---HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc---------cceeeeecCchhhHHH
Confidence 222222222221 12222222 2223344789999999999999999988765 8999999999999999
Q ss_pred HhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEE
Q 010422 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (511)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~ 381 (511)
.+++..|+.+...|+|+||++++|+|||+++.||+ || ...+...|.||+||+||.| .|.+|
T Consensus 508 n~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD----------~ardIdththrigrtgRag~kGvay 569 (731)
T KOG0339|consen 508 NEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YD----------FARDIDTHTHRIGRTGRAGEKGVAY 569 (731)
T ss_pred HHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------cc----------ccchhHHHHHHhhhcccccccceee
Confidence 99999999999999999999999999999999999 98 6778889999999999999 99999
Q ss_pred EecChhhHhh
Q 010422 382 RLYPENEFDK 391 (511)
Q Consensus 382 ~l~~~~~~~~ 391 (511)
.++++.+-+.
T Consensus 570 TlvTeKDa~f 579 (731)
T KOG0339|consen 570 TLVTEKDAEF 579 (731)
T ss_pred EEechhhHHH
Confidence 9999887653
No 67
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.3e-31 Score=263.24 Aligned_cols=336 Identities=20% Similarity=0.255 Sum_probs=221.1
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcc--cc----CCCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG--FC----RDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~--~~----~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
.-.+.++|.+++..+..+++++.|||||||||..+...++.+. .. ..+.+++++.|++.++.|......+....
T Consensus 156 F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~ 235 (593)
T KOG0344|consen 156 FDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSID 235 (593)
T ss_pred CCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCC
Confidence 3457889999999999999999999999999944433343322 22 33678999999999999999887665511
Q ss_pred c-cCCe---eeEEE------------eecccCChhhhHHHHhhCc----CCCCCCchhHhhhhhhhhhhHHHHHHHHHHH
Q 010422 86 E-LGQR---VGYSI------------RFDDRTSTSTRIKEALLDP----YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (511)
Q Consensus 86 ~-~~~~---vg~~~------------~~~~~~~~~~~i~~~l~~~----~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~ 145 (511)
. .+.. ..|.. .++...+++.++...+..+ .++.+.++|+||++
T Consensus 236 ~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD----------------- 298 (593)
T KOG0344|consen 236 EGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD----------------- 298 (593)
T ss_pred CCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-----------------
Confidence 0 0000 01110 0011122223333333332 57889999999995
Q ss_pred HhhccccCCCCCCCCCCCCchhhhcc-CCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhhhC-CCCeEEeCCc
Q 010422 146 NARSKSADGHSNGNNNNENSDMILDR-GNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFG-CAKAVHVQGR 221 (511)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~~~-~~~~~~~~~~ 221 (511)
++++. .|..+.-+++..+.. +++++-++|||. +.+++++... +...+.+..+
T Consensus 299 ---------------------~lfe~~~f~~Qla~I~sac~s---~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~ 354 (593)
T KOG0344|consen 299 ---------------------LLFEPEFFVEQLADIYSACQS---PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR 354 (593)
T ss_pred ---------------------hhhChhhHHHHHHHHHHHhcC---cchhhhhhhccccHHHHHHHHHhhccceeEEEecc
Confidence 23333 222233333333333 788999999998 5555554332 2223333322
Q ss_pred cccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH
Q 010422 222 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (511)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~ 301 (511)
....+..-..........-.+..+..+....-..++|||+.+.+.+.++...|... .++.+..+||..++.+
T Consensus 355 ~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~--------~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 355 NSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY--------DNINVDVIHGERSQKQ 426 (593)
T ss_pred hhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc--------cCcceeeEecccchhH
Confidence 21111111111001111222333444444445788999999999999999888521 2788999999999999
Q ss_pred HHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeE
Q 010422 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (511)
Q Consensus 302 r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~ 380 (511)
|+..++.|+.|++.|++||+++++|+|+-+++.||| || .|.+..+|+||+||+||+| .|++
T Consensus 427 rde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD----------~p~s~~syihrIGRtgRag~~g~A 488 (593)
T KOG0344|consen 427 RDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YD----------FPQSDLSYIHRIGRTGRAGRSGKA 488 (593)
T ss_pred HHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cC----------CCchhHHHHHHhhccCCCCCCcce
Confidence 999999999999999999999999999999999999 99 7999999999999999999 8999
Q ss_pred EEecChhhHhhccCCCC-CcccccCccHHHHHHHH
Q 010422 381 FRLYPENEFDKLEDSTK-PEIKRCNLSNVILQLKA 414 (511)
Q Consensus 381 ~~l~~~~~~~~~~~~~~-pei~~~~l~~~~L~~~~ 414 (511)
|.+|+.++...+..-.. -+..-+++......++.
T Consensus 489 itfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 489 ITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKK 523 (593)
T ss_pred EEEeccccchhhhhHHHHHHHcCCcchHHHHhhhh
Confidence 99999976654321110 01123355556665554
No 68
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=5.4e-31 Score=279.62 Aligned_cols=322 Identities=18% Similarity=0.210 Sum_probs=237.0
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
...|.+.++|++++..+.+|+.++++||||||||.+...++...... +.+++++.|.+++..|-..++...++.- ..
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv-~~ 191 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDV-AD 191 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhh-hh
Confidence 45677899999999999999999999999999998877777666554 4459999999999999999887777633 33
Q ss_pred eeeEEEee---cccC----ChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCC
Q 010422 90 RVGYSIRF---DDRT----STSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNN 160 (511)
Q Consensus 90 ~vg~~~~~---~~~~----~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 160 (511)
.||...+. .... .+.+-+..++.. ..+..+.+||+||+|
T Consensus 192 ~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH-------------------------------- 239 (1041)
T COG4581 192 MVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH-------------------------------- 239 (1041)
T ss_pred hccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee--------------------------------
Confidence 34433221 1111 112333444443 468889999999999
Q ss_pred CCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCC-----CCeEEeCCccccccEEEcCCC-
Q 010422 161 NNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTLYP- 233 (511)
Q Consensus 161 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~- 233 (511)
.|.|..||..|++.+..++ .++++|+||||+ |++.|+.|++. ..++..+.++.|...++....
T Consensus 240 ------yi~D~eRG~VWEE~Ii~lP----~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~ 309 (1041)
T COG4581 240 ------YIGDRERGVVWEEVIILLP----DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKG 309 (1041)
T ss_pred ------eccccccchhHHHHHHhcC----CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCc
Confidence 7889999999999999998 778999999999 99999999972 335555667777666654431
Q ss_pred -------CCchHHHH----H--------------------------------------HHHHHHhhcCCCCcEEEEcCCH
Q 010422 234 -------EPDYLDAT----L--------------------------------------ITIFQVHLDEAPGDILVFLTGQ 264 (511)
Q Consensus 234 -------~~~~~~~~----~--------------------------------------~~~~~~~~~~~~~~~LVF~~s~ 264 (511)
..++.... . -.+.........-++++|+-|+
T Consensus 310 l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr 389 (1041)
T COG4581 310 LFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSR 389 (1041)
T ss_pred eeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEch
Confidence 01100000 0 0122222223356899999999
Q ss_pred HHHHHHHHHHHHH-------------------HhcCCCCCCCe-------------EEEEccCCCCHHHHHhhcCcCCCC
Q 010422 265 EEIESVERLVQER-------------------LLQLPEASRKL-------------VTVPIFSSLPSEQQMRVFAPAAAG 312 (511)
Q Consensus 265 ~~~~~l~~~l~~~-------------------~~~~~~~~~~~-------------~v~~lh~~l~~~~r~~i~~~f~~g 312 (511)
..|+..+..+... +..+..+...+ .+..||+||-+..+..+++.|..|
T Consensus 390 ~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G 469 (1041)
T COG4581 390 RGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG 469 (1041)
T ss_pred hhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc
Confidence 9999988877521 11222222222 355789999999999999999999
Q ss_pred CeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecCh
Q 010422 313 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPE 386 (511)
Q Consensus 313 ~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~ 386 (511)
.++|++||.+++.|+|+|.-++|+- ....||... ..|.+..+|.|+.|||||.| .|.++.+.+.
T Consensus 470 LvkvvFaTeT~s~GiNmPartvv~~----~l~K~dG~~------~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 470 LVKVVFATETFAIGINMPARTVVFT----SLSKFDGNG------HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ceeEEeehhhhhhhcCCcccceeee----eeEEecCCc------eeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 9999999999999999999888874 445566322 26899999999999999999 7999988543
No 69
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.9e-30 Score=246.96 Aligned_cols=344 Identities=17% Similarity=0.223 Sum_probs=217.0
Q ss_pred HHhhccCCCHHHHHHHHHHHh---------cCCEEEEEcCCCCchhchHHHHHhhccccC--CCeEEEEeCccHHHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVR---------KNDILIIVGETGSGKTTQLPQFLFHAGFCR--DGKLIGVTQPRRVAAVTV 75 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~---------~~~~~~i~apTGsGKTt~~~~~l~~~~~~~--~~~~i~~~~p~~~l~~~~ 75 (511)
+.....-..+++|..++.++. ..++++|.||||||||....+++.+....+ +..+++++.|++.++.|+
T Consensus 152 l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV 231 (620)
T KOG0350|consen 152 LVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQV 231 (620)
T ss_pred HHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHH
Confidence 334445567888888888772 357899999999999944333443333322 346788999999999999
Q ss_pred HHHHHHHhCCccCCeeeEEEee-------------------cccCChhhhHHHHhhC---cCCCCCCchhHhhhhhhhh-
Q 010422 76 AKRVAEESGVELGQRVGYSIRF-------------------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTV- 132 (511)
Q Consensus 76 ~~~~~~~~~~~~~~~vg~~~~~-------------------~~~~~~~~~i~~~l~~---~~l~~~~~iIiDE~H~r~~- 132 (511)
.+.+..+.. ..|..|+..... +..+.+..++...+.+ ..|.++.++||||++...-
T Consensus 232 ~~~f~~~~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 232 YDTFKRLNS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred HHHHHHhcc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH
Confidence 998766543 223333322111 1122333444444442 3488999999999974221
Q ss_pred -hhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCcccccccc--ccCCCCccEEEeccCC--CHHHHH
Q 010422 133 -HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ--GRKFAPLKLIIMSASL--DARGFS 207 (511)
Q Consensus 133 -~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~i~~SAT~--~~~~l~ 207 (511)
..+|+-.++.. .++..+-...+.+++..+..+....-..+. ....++...+.+|||+ ++..+.
T Consensus 311 sfQ~Wl~~v~~~------------~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 311 SFQEWLDTVMSL------------CKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred HHHHHHHHHHHH------------hCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 11222111111 111111122244444443222211111111 1112566688899999 888888
Q ss_pred hhhCCCC-eEEeCCc---cc--cccEEE-cCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhc
Q 010422 208 EYFGCAK-AVHVQGR---QF--PVEILY-TLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ 280 (511)
Q Consensus 208 ~~~~~~~-~~~~~~~---~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~ 280 (511)
++--..| .+.+... .+ |-.... ....+...... .++......+..++|+|+++.+.+..++..|.=.+..
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl---~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPL---AVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchH---hHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc
Confidence 7644333 4443321 01 100000 00011111111 2223333344678999999999999999999733322
Q ss_pred CCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeec
Q 010422 281 LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 360 (511)
Q Consensus 281 ~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~ 360 (511)
....+..+.|+++...|.+.++.|..|.++||||||+++||+|+.+|+.||| || .|.
T Consensus 456 -----~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd----------~P~ 512 (620)
T KOG0350|consen 456 -----DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD----------PPA 512 (620)
T ss_pred -----ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC----------CCc
Confidence 2556677899999999999999999999999999999999999999999999 99 599
Q ss_pred CHHHHHHhccccCCCC-CCeEEEecChhhH
Q 010422 361 SKAQALQRSGRAGREG-PGKCFRLYPENEF 389 (511)
Q Consensus 361 s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 389 (511)
+..+|+||+||+||+| .|.||.+..+.+.
T Consensus 513 ~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 513 SDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hhhHHHHhhcccccccCCceEEEeeccccc
Confidence 9999999999999999 9999999977644
No 70
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=5.2e-30 Score=276.07 Aligned_cols=317 Identities=23% Similarity=0.237 Sum_probs=224.7
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
+....+|++|.+++..+.+|++++|+.|||||||..+.++++++....+..+++++.|++++++.+.+++.++..... .
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~-~ 144 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLP-G 144 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCC-C
Confidence 344558999999999999999999999999999988888888888877777899999999999999999887765332 2
Q ss_pred eeeEEEeecccCChhhhHH-----------------HHhhC------cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHH
Q 010422 90 RVGYSIRFDDRTSTSTRIK-----------------EALLD------PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (511)
Q Consensus 90 ~vg~~~~~~~~~~~~~~i~-----------------~~l~~------~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~ 146 (511)
.+.. ..+++.+....+.. .++.. -.++++++||+||+|
T Consensus 145 ~v~~-~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH------------------ 205 (851)
T COG1205 145 KVTF-GRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH------------------ 205 (851)
T ss_pred ccee-eeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce------------------
Confidence 2322 23445544443311 11111 126679999999998
Q ss_pred hhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHH-hhhCCCCeEEeCCcccc
Q 010422 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFS-EYFGCAKAVHVQGRQFP 224 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~-~~~~~~~~~~~~~~~~~ 224 (511)
++.+.+|+++.+++.+. .+..+..+.++++|.+|||+ |+..++ ++++..-...+.+.-.|
T Consensus 206 ---------tYrGv~GS~vA~llRRL---------~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~ 267 (851)
T COG1205 206 ---------TYRGVQGSEVALLLRRL---------LRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSP 267 (851)
T ss_pred ---------eccccchhHHHHHHHHH---------HHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCC
Confidence 66677777766655542 11122222689999999999 777766 45443222214433333
Q ss_pred c--cEEEcCCCC---------CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEc
Q 010422 225 V--EILYTLYPE---------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 293 (511)
Q Consensus 225 ~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~l 293 (511)
- .......+. .+.. .....+..... ..+-++|+|+.+++.++.+.....+.+.... ......+..+
T Consensus 268 ~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~ 344 (851)
T COG1205 268 RGLRYFVRREPPIRELAESIRRSAL-AELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTY 344 (851)
T ss_pred CCceEEEEeCCcchhhhhhcccchH-HHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeec
Confidence 2 222222220 0111 11222222221 2377899999999999999866666554443 3334678999
Q ss_pred cCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeec-CHHHHHHhcccc
Q 010422 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI-SKAQALQRSGRA 372 (511)
Q Consensus 294 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~-s~~~~~Qr~GRa 372 (511)
+|++..++|.+++..|++|+..++++|++++.|+||.+++.||..|+ |. +..+++||+|||
T Consensus 345 ~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRa 406 (851)
T COG1205 345 RAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRA 406 (851)
T ss_pred cccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999774 66 899999999999
Q ss_pred CCCC-CCeEEEecC
Q 010422 373 GREG-PGKCFRLYP 385 (511)
Q Consensus 373 GR~~-~G~~~~l~~ 385 (511)
||.+ .+..+....
T Consensus 407 GR~~~~~l~~~v~~ 420 (851)
T COG1205 407 GRRGQESLVLVVLR 420 (851)
T ss_pred cCCCCCceEEEEeC
Confidence 9999 555555554
No 71
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.8e-30 Score=244.35 Aligned_cols=308 Identities=18% Similarity=0.254 Sum_probs=223.8
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc-------cCCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-------CRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~-------~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
-..-.++.+|+.+++.+.+|++++..|.||||||....+++++..+ ...+...+++.|++++++|+.+.+.+.
T Consensus 37 lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL 116 (569)
T KOG0346|consen 37 LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKL 116 (569)
T ss_pred hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHH
Confidence 3344688899999999999999999999999999443333333222 123567899999999999988765443
Q ss_pred h---CCcc-----CCe-------eeEEEeecccCChhhhHHHHhhC---cCCCCCCchhHhhhhhhhhhhHHHHHHHHHH
Q 010422 83 S---GVEL-----GQR-------VGYSIRFDDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (511)
Q Consensus 83 ~---~~~~-----~~~-------vg~~~~~~~~~~~~~~i~~~l~~---~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~ 144 (511)
. ...+ ... .......+..+.++.++...+.. ..+..++++|+|||
T Consensus 117 ~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEA----------------- 179 (569)
T KOG0346|consen 117 VEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEA----------------- 179 (569)
T ss_pred HHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechh-----------------
Confidence 2 2111 000 00111222333444555544432 24677899999999
Q ss_pred HHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC--CHHHHHhhhCCCC-eEEeCCc
Q 010422 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAK-AVHVQGR 221 (511)
Q Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~l~~~~~~~~-~~~~~~~ 221 (511)
|.++..+....+..+.+.++ +..|.++||||+ |...+...+-..| ++.....
T Consensus 180 ---------------------DLllsfGYeedlk~l~~~LP----r~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~ 234 (569)
T KOG0346|consen 180 ---------------------DLLLSFGYEEDLKKLRSHLP----RIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEG 234 (569)
T ss_pred ---------------------hhhhhcccHHHHHHHHHhCC----chhhheeehhhhhhHHHHHHHHhccCCeEEEeccc
Confidence 57888888877777777777 778999999999 7778887665444 4444433
Q ss_pred ccc----ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCC
Q 010422 222 QFP----VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (511)
Q Consensus 222 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l 297 (511)
..| +..++....+.+..-. +-.++.+. --.|++|||+||.+.|..+.-.|+.. ++..+.+.|.|
T Consensus 235 el~~~dqL~Qy~v~cse~DKfll-lyallKL~--LI~gKsliFVNtIdr~YrLkLfLeqF---------GiksciLNseL 302 (569)
T KOG0346|consen 235 ELPNPDQLTQYQVKCSEEDKFLL-LYALLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCILNSEL 302 (569)
T ss_pred cCCCcccceEEEEEeccchhHHH-HHHHHHHH--HhcCceEEEEechhhhHHHHHHHHHh---------CcHhhhhcccc
Confidence 332 3334443333332222 11222221 12799999999999999999999887 88999999999
Q ss_pred CHHHHHhhcCcCCCCCeEEEEecc-----------------------------------ccccCCCCCCeEEEEeCCccc
Q 010422 298 PSEQQMRVFAPAAAGFRKVILATN-----------------------------------IAETSVTIPGIKYVIDPGFVK 342 (511)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vlvaT~-----------------------------------~~~~Gvdip~v~~VI~~g~~~ 342 (511)
|...|.-|+++|..|.+.+||||| -.++|||+..|..|+|
T Consensus 303 P~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN----- 377 (569)
T KOG0346|consen 303 PANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN----- 377 (569)
T ss_pred cccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee-----
Confidence 999999999999999999999999 2568999999999999
Q ss_pred ceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhH
Q 010422 343 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 389 (511)
Q Consensus 343 ~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 389 (511)
|| .|.+..+|+||+||++|.+ +|.+..++.+.+.
T Consensus 378 ---FD----------~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 378 ---FD----------FPETVTSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred ---cC----------CCCchHHHHHhccccccCCCCCceEEEecchHH
Confidence 88 7999999999999999999 8999999866544
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=6.2e-29 Score=246.83 Aligned_cols=278 Identities=19% Similarity=0.176 Sum_probs=171.3
Q ss_pred HHHHHHHHHhcCC--EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCc---cCCeee
Q 010422 18 VEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE---LGQRVG 92 (511)
Q Consensus 18 ~q~~~~~~l~~~~--~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~---~~~~vg 92 (511)
+|.+++.++.+++ +++++||||||||..+..+++.. +..++++.|+++++.++.+++......- .+..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 4889999998876 48899999999997766665542 2346788899999999888877665210 011111
Q ss_pred EEEee--------c--------------------------ccCChhhhHHHHhh----Cc------CCCCCCchhHhhhh
Q 010422 93 YSIRF--------D--------------------------DRTSTSTRIKEALL----DP------YLSRYSAIIVDEAH 128 (511)
Q Consensus 93 ~~~~~--------~--------------------------~~~~~~~~i~~~l~----~~------~l~~~~~iIiDE~H 128 (511)
..... . -.......+..++. .+ ++.+++++|+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 00000 0 00011111112211 11 25789999999999
Q ss_pred hhhhhhHHHHH-HHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHH
Q 010422 129 ERTVHTDVLLG-LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS 207 (511)
Q Consensus 129 ~r~~~~~~ll~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~ 207 (511)
..+.+....+. .+......+. . ....++++||||++.....
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~----------------------------------~----~~~~~~i~lSAT~~~~~~~ 197 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRF----------------------------------F----ECRRKFVFLSATPDPALIL 197 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHh----------------------------------h----hcCCcEEEEecCCCHHHHH
Confidence 87754432222 1111111110 0 0346999999999664322
Q ss_pred ---hh--hCCCCeEEeCCccc----------------------cccEEEcCCCC--CchHHHHHHHHHHHhhcCCCCcEE
Q 010422 208 ---EY--FGCAKAVHVQGRQF----------------------PVEILYTLYPE--PDYLDATLITIFQVHLDEAPGDIL 258 (511)
Q Consensus 208 ---~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L 258 (511)
+. + +.+...+.+..+ +++..+..... ...+......+.......+++++|
T Consensus 198 ~l~~~~~~-~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~L 276 (357)
T TIGR03158 198 RLQNAKQA-GVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGA 276 (357)
T ss_pred HHHhcccc-CceeeeecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEE
Confidence 22 2 234555555411 23333322111 111222223333333334577999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeC
Q 010422 259 VFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDP 338 (511)
Q Consensus 259 VF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~ 338 (511)
|||+|++.++.++..|.+.. .++.+..+||.+++.+|.++. +..|+|||+++++|+|+|++ +||
T Consensus 277 If~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-- 340 (357)
T TIGR03158 277 IILDSLDEVNRLSDLLQQQG-------LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-- 340 (357)
T ss_pred EEECCHHHHHHHHHHHhhhC-------CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE--
Confidence 99999999999999998741 135678899999999987653 67899999999999999987 455
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhccccC
Q 010422 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (511)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaG 373 (511)
++ |.+.++|+||+||+|
T Consensus 341 -------~~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -------FS-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred -------EC-----------CCCHHHHhhhcccCC
Confidence 22 678899999999998
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=6.6e-29 Score=254.21 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=93.9
Q ss_pred hcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEE----ccCCCCHHHHHhhcCcCCCCCeEEEEecccccc
Q 010422 250 LDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP----IFSSLPSEQQMRVFAPAAAGFRKVILATNIAET 325 (511)
Q Consensus 250 ~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~----lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~ 325 (511)
...+...++||+.+|+.|+.+.++|.+.... ...+.+-+.- -..+|++.+|.++++.|++|..+|||||+++|.
T Consensus 409 ~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~--~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EE 486 (746)
T KOG0354|consen 409 EQNPDSRTIIFVETRESALALKKWLLQLHEL--GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEE 486 (746)
T ss_pred hcCCCccEEEEEehHHHHHHHHHHHHhhhhc--ccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhc
Confidence 3445678999999999999999999863221 0011111111 125999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecCh
Q 010422 326 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (511)
Q Consensus 326 Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 386 (511)
|+||++++.||- ||. ..++...+||.|| ||..+|+|+.|++.
T Consensus 487 GLDI~ec~lVIc--------Yd~----------~snpIrmIQrrGR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 487 GLDIGECNLVIC--------YDY----------SSNPIRMVQRRGR-GRARNSKCVLLTTG 528 (746)
T ss_pred cCCcccccEEEE--------ecC----------CccHHHHHHHhcc-ccccCCeEEEEEcc
Confidence 999999999998 883 4567789999999 99999999999973
No 74
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.6e-30 Score=239.26 Aligned_cols=302 Identities=16% Similarity=0.288 Sum_probs=224.4
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcc-ccCCCeEEEEeCccHHHHHHHHHHHHHHhCCcc----C
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG-FCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL----G 88 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~-~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~----~ 88 (511)
.|..+|+.++..+.+|.++.+.+++|+|||..+...++... .......++++.|+++++.+..+... ..+... .
T Consensus 48 kPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~-~lg~~~~~~v~ 126 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVR-ALGDHMDVSVH 126 (397)
T ss_pred CchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHH-hhhcccceeee
Confidence 57889999999999999999999999999965555555543 22234568889999999998885433 222221 1
Q ss_pred CeeeEEEee-----------cccCChhhhHHHHhhCc--CCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCC
Q 010422 89 QRVGYSIRF-----------DDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (511)
Q Consensus 89 ~~vg~~~~~-----------~~~~~~~~~i~~~l~~~--~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~ 155 (511)
..+|..... .-...+..++..++... ....+.++|+||+
T Consensus 127 ~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa---------------------------- 178 (397)
T KOG0327|consen 127 ACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA---------------------------- 178 (397)
T ss_pred eecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch----------------------------
Confidence 222211110 00112223333444322 2445899999999
Q ss_pred CCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHH--HH-hhhCCCCeEEeCCcccc---ccEEE
Q 010422 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG--FS-EYFGCAKAVHVQGRQFP---VEILY 229 (511)
Q Consensus 156 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--l~-~~~~~~~~~~~~~~~~~---~~~~~ 229 (511)
|.|+..++..++.+++..++ ++.|++++|||++.+. +. +|..++-.+.+...... ...+|
T Consensus 179 ----------DEmLs~gfkdqI~~if~~lp----~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~ 244 (397)
T KOG0327|consen 179 ----------DEMLSRGFKDQIYDIFQELP----SDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFY 244 (397)
T ss_pred ----------HhhhccchHHHHHHHHHHcC----cchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeee
Confidence 57899999999888888888 7889999999995544 44 45544434444332211 12223
Q ss_pred cCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcC
Q 010422 230 TLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA 309 (511)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f 309 (511)
....... ++..++.++. ...+.+|||||++.+..+...|... +..+..+|+.|.+.+|..+...|
T Consensus 245 i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef 309 (397)
T KOG0327|consen 245 INVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREF 309 (397)
T ss_pred eeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHh
Confidence 2222222 5566666666 4778999999999999999999665 88999999999999999999999
Q ss_pred CCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 310 AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 310 ~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
+.|..+|||+|+.+++|+|+-.+..||+ || .|..+++|.||+||+||.| +|.++.++++++
T Consensus 310 ~~gssrvlIttdl~argidv~~~slvin--------yd----------lP~~~~~yihR~gr~gr~grkg~~in~v~~~d 371 (397)
T KOG0327|consen 310 RSGSSRVLITTDLLARGIDVQQVSLVVN--------YD----------LPARKENYIHRIGRAGRFGRKGVAINFVTEED 371 (397)
T ss_pred hcCCceEEeeccccccccchhhcceeee--------ec----------cccchhhhhhhcccccccCCCceeeeeehHhh
Confidence 9999999999999999999999999999 98 6899999999999999999 999999999877
Q ss_pred Hhh
Q 010422 389 FDK 391 (511)
Q Consensus 389 ~~~ 391 (511)
...
T Consensus 372 ~~~ 374 (397)
T KOG0327|consen 372 VRD 374 (397)
T ss_pred HHH
Confidence 654
No 75
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=256.88 Aligned_cols=306 Identities=18% Similarity=0.266 Sum_probs=220.6
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc------cCCCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF------CRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~------~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
.=+++++|.+++++|..|+++|.+|.||||||..+.++++.+.. ...|...+++.|++.++.|+.+.+.++...
T Consensus 385 y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~ 464 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL 464 (997)
T ss_pred CCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 33789999999999999999999999999999444333333222 123678899999999999999998877643
Q ss_pred ccCCeeeEEEeecccCChhhhHH--------------H--HhhCc---CCCCCCchhHhhhhhhhhhhHHHHHHHHHHHH
Q 010422 86 ELGQRVGYSIRFDDRTSTSTRIK--------------E--ALLDP---YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (511)
Q Consensus 86 ~~~~~vg~~~~~~~~~~~~~~i~--------------~--~l~~~---~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~ 146 (511)
.+..+-..............++ . ..++. .+..+.++|+||+
T Consensus 465 -l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~dea------------------- 524 (997)
T KOG0334|consen 465 -LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEA------------------- 524 (997)
T ss_pred -cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechh-------------------
Confidence 3332211111111111111111 1 11222 2555679999999
Q ss_pred hhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHHhhhCCCCe-EEeCCccc
Q 010422 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEYFGCAKA-VHVQGRQF 223 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~~~~~~~~~-~~~~~~~~ 223 (511)
|.|+|++|.+++..++..+. ++.|.+++|||.+. +.++.-.-..|+ +.+.++..
T Consensus 525 -------------------DrmfdmgfePq~~~Ii~nlr----pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~sv 581 (997)
T KOG0334|consen 525 -------------------DRMFDMGFEPQITRILQNLR----PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSV 581 (997)
T ss_pred -------------------hhhheeccCcccchHHhhcc----hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEcccee
Confidence 68999999999999888885 88999999999944 344433222332 23333221
Q ss_pred ---cccEEEcCCC-CCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCH
Q 010422 224 ---PVEILYTLYP-EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 299 (511)
Q Consensus 224 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~ 299 (511)
.+...+...+ ....+..... ++.. ....++++|||.....|..|.+.|.+. ++.+..+||+.++
T Consensus 582 V~k~V~q~v~V~~~e~eKf~kL~e-Ll~e--~~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~~slHGgv~q 649 (997)
T KOG0334|consen 582 VCKEVTQVVRVCAIENEKFLKLLE-LLGE--RYEDGKTIIFVDKQEKADALLRDLQKA---------GYNCDSLHGGVDQ 649 (997)
T ss_pred EeccceEEEEEecCchHHHHHHHH-HHHH--HhhcCCEEEEEcCchHHHHHHHHHHhc---------CcchhhhcCCCch
Confidence 1222222223 2233333222 2222 223899999999999999999999876 8888889999999
Q ss_pred HHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CC
Q 010422 300 EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG 378 (511)
Q Consensus 300 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G 378 (511)
.+|..+++.|++|..+++|||+++++|+|++++..||+ || .|.-.+.|+||+||+||+| .|
T Consensus 650 ~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd----------~pnh~edyvhR~gRTgragrkg 711 (997)
T KOG0334|consen 650 HDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YD----------FPNHYEDYVHRVGRTGRAGRKG 711 (997)
T ss_pred HHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE--------cc----------cchhHHHHHHHhcccccCCccc
Confidence 99999999999999999999999999999999999999 98 6777778999999999999 89
Q ss_pred eEEEecChhhHh
Q 010422 379 KCFRLYPENEFD 390 (511)
Q Consensus 379 ~~~~l~~~~~~~ 390 (511)
.||.+.++++..
T Consensus 712 ~AvtFi~p~q~~ 723 (997)
T KOG0334|consen 712 AAVTFITPDQLK 723 (997)
T ss_pred eeEEEeChHHhh
Confidence 999999885543
No 76
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=9.6e-28 Score=249.03 Aligned_cols=291 Identities=17% Similarity=0.100 Sum_probs=185.6
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
...++++|++++..+..+++.++++|||||||.++..++. ......+.+++++.|++.++.|..+++.++.........
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~-~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSR-YYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH-HHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 3678999999999988888899999999999966544322 112222337899999999999999988776532211111
Q ss_pred eEEEeec------ccCChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCc
Q 010422 92 GYSIRFD------DRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 165 (511)
Q Consensus 92 g~~~~~~------~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~ 165 (511)
+...... -.+.+...+.... ..++.+++++|+||||..... .+..+++.
T Consensus 191 ~i~~g~~~~~~~~I~VaT~qsl~~~~-~~~~~~~~~iIvDEaH~~~~~--~~~~il~~---------------------- 245 (501)
T PHA02558 191 KIYSGTAKDTDAPIVVSTWQSAVKQP-KEWFDQFGMVIVDECHLFTGK--SLTSIITK---------------------- 245 (501)
T ss_pred EEecCcccCCCCCEEEeeHHHHhhch-hhhccccCEEEEEchhcccch--hHHHHHHh----------------------
Confidence 1110100 0111222221111 225788999999999954321 12122211
Q ss_pred hhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHH--H--HHhhhCCCCeEEeC-------CccccccEEE--cC
Q 010422 166 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DAR--G--FSEYFGCAKAVHVQ-------GRQFPVEILY--TL 231 (511)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~--~--l~~~~~~~~~~~~~-------~~~~~~~~~~--~~ 231 (511)
+. ...++++||||+ +.. . +..+||.. ...+. +...+..+.. ..
T Consensus 246 ------------------~~----~~~~~lGLTATp~~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~ 302 (501)
T PHA02558 246 ------------------LD----NCKFKFGLTGSLRDGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLR 302 (501)
T ss_pred ------------------hh----ccceEEEEeccCCCccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEecc
Confidence 11 234689999999 322 1 23345421 11111 1111111110 00
Q ss_pred CC--------CCchHH------------HHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010422 232 YP--------EPDYLD------------ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (511)
Q Consensus 232 ~~--------~~~~~~------------~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (511)
.+ ..+|.+ ..+..+..... ..+.++|||+.+.++++.+++.|.+. +..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~ 372 (501)
T PHA02558 303 YPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVY 372 (501)
T ss_pred CCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEE
Confidence 00 011110 11111111112 34678999999999999999999886 77899
Q ss_pred EccCCCCHHHHHhhcCcCCCCCeEEEEec-cccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhcc
Q 010422 292 PIFSSLPSEQQMRVFAPAAAGFRKVILAT-NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 370 (511)
Q Consensus 292 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT-~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~G 370 (511)
.+||+++.++|..+++.|++|...||||| +++++|+|+|++++||. ++ .+.|...|+||+|
T Consensus 373 ~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~----------p~~s~~~~~QriG 434 (501)
T PHA02558 373 YVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AH----------PSKSKIIVLQSIG 434 (501)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ec----------CCcchhhhhhhhh
Confidence 99999999999999999999999999998 89999999999999996 54 4667888999999
Q ss_pred ccCCCCCCe
Q 010422 371 RAGREGPGK 379 (511)
Q Consensus 371 RaGR~~~G~ 379 (511)
|++|.++|+
T Consensus 435 R~~R~~~~K 443 (501)
T PHA02558 435 RVLRKHGSK 443 (501)
T ss_pred ccccCCCCC
Confidence 999998653
No 77
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=1.1e-28 Score=243.01 Aligned_cols=308 Identities=16% Similarity=0.190 Sum_probs=226.7
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-CCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
..--++++|..+++.+..+-+++|.+..|+|||.++-.+..+..-. .....++++.|+|+++.|+.+.+.+....-.|.
T Consensus 44 ~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 4456889999999999999999999999999996655555544432 235678899999999999999877654322222
Q ss_pred eeeEEEeecc-------------cCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCC
Q 010422 90 RVGYSIRFDD-------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (511)
Q Consensus 90 ~vg~~~~~~~-------------~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~ 154 (511)
.+..-+++.. ...+..+|..+... ...+.++++|+|||+
T Consensus 124 ~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-------------------------- 177 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-------------------------- 177 (980)
T ss_pred ceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH--------------------------
Confidence 2221111111 11233444444433 236788999999995
Q ss_pred CCCCCCCCCCchhhhc-cCCCCCCccccccccccCCCCccEEEeccCC--CH-HHHHhhhCCCCeEEeCCcc---ccccE
Q 010422 155 HSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DA-RGFSEYFGCAKAVHVQGRQ---FPVEI 227 (511)
Q Consensus 155 ~~~~~~~g~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~-~~l~~~~~~~~~~~~~~~~---~~~~~ 227 (511)
.+++ ..|..++.-++..++ ...|++++|||- |. +.++.|+.++..+....+. +.+..
T Consensus 178 ------------kL~~t~sfq~~In~ii~slP----~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQ 241 (980)
T KOG4284|consen 178 ------------KLMDTESFQDDINIIINSLP----QIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQ 241 (980)
T ss_pred ------------hhhchhhHHHHHHHHHHhcc----hhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhh
Confidence 3333 223333333455555 567999999998 33 3577888877777666543 34455
Q ss_pred EEcCCCCCc----hHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 010422 228 LYTLYPEPD----YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (511)
Q Consensus 228 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 303 (511)
++...+..+ -...++..+-++...-+-.+.||||+....|+.++..|... ++.+.++.|.|++.+|.
T Consensus 242 yv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ISgaM~Q~~Rl 312 (980)
T KOG4284|consen 242 YVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTFISGAMSQKDRL 312 (980)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEEeccccchhHHH
Confidence 555544432 22334455555666666778999999999999999999876 99999999999999999
Q ss_pred hhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEE
Q 010422 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (511)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (511)
.+++.++.-..+|||+||..++|||-|.++.||| .| .|.+-.+|.||+|||||.| .|.++.
T Consensus 313 ~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD----------~p~d~eTY~HRIGRAgRFG~~G~aVT 374 (980)
T KOG4284|consen 313 LAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN--------ID----------APADEETYFHRIGRAGRFGAHGAAVT 374 (980)
T ss_pred HHHHHhhhceEEEEEecchhhccCCccccceEEe--------cC----------CCcchHHHHHHhhhcccccccceeEE
Confidence 9999999999999999999999999999999999 77 5888999999999999999 899998
Q ss_pred ecChh
Q 010422 383 LYPEN 387 (511)
Q Consensus 383 l~~~~ 387 (511)
++..+
T Consensus 375 ~~~~~ 379 (980)
T KOG4284|consen 375 LLEDE 379 (980)
T ss_pred Eeccc
Confidence 88543
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=6.1e-27 Score=250.53 Aligned_cols=299 Identities=20% Similarity=0.275 Sum_probs=215.5
Q ss_pred CHHHHHHHHHHHhcCCEEEEEcCCCCchh--chHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC---
Q 010422 15 IASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ--- 89 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT--t~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~--- 89 (511)
-++-|.+++..+..|++++|..|||+||| +++|..+... ..+++.|...+...+...+.. .+.....
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g-------itvVISPL~SLm~DQv~~L~~-~~I~a~~L~s 336 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG-------VTVVISPLISLMQDQVTHLSK-KGIPACFLSS 336 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC-------ceEEeccHHHHHHHHHHhhhh-cCcceeeccc
Confidence 45679999999999999999999999999 6777666542 677888998888766655421 1110000
Q ss_pred ---------------------eeeEEEeecccCChhhhHHHHhhCcCCCC---CCchhHhhhhhhhhhhHHHHHHHHHHH
Q 010422 90 ---------------------RVGYSIRFDDRTSTSTRIKEALLDPYLSR---YSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (511)
Q Consensus 90 ---------------------~vg~~~~~~~~~~~~~~i~~~l~~~~l~~---~~~iIiDE~H~r~~~~~~ll~~l~~~~ 145 (511)
.+-|.. .........+...+. .+.. +..+||||||+.+.|.+.+..-.+++.
T Consensus 337 ~q~~~~~~~i~q~l~~~~~~ikilYvt--PE~v~~~~~l~~~~~--~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~ 412 (941)
T KOG0351|consen 337 IQTAAERLAILQKLANGNPIIKILYVT--PEKVVASEGLLESLA--DLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG 412 (941)
T ss_pred cccHHHHHHHHHHHhCCCCeEEEEEeC--HHHhhcccchhhHHH--hccCCCeeEEEEecHHHHhhhhcccccHHHHHHH
Confidence 000110 000001111111111 1222 788999999999999999998888877
Q ss_pred HhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhhhCCCCeEEeCCcc
Q 010422 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQ 222 (511)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~~~~~~~~~~~~~~ 222 (511)
..+.+. +.+.++++|||.... ++.+-++-..........
T Consensus 413 ~l~~~~--------------------------------------~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf 454 (941)
T KOG0351|consen 413 LLRIRF--------------------------------------PGVPFIALTATATERVREDVIRSLGLRNPELFKSSF 454 (941)
T ss_pred HHHhhC--------------------------------------CCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC
Confidence 655221 567999999999443 455555433222333333
Q ss_pred ccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH
Q 010422 223 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (511)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r 302 (511)
.+.+.+|...+..+ .+........+-...+...+||+|.++++|+.++..|.+. ++....||+||+..+|
T Consensus 455 nR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R 524 (941)
T KOG0351|consen 455 NRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKER 524 (941)
T ss_pred CCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHH
Confidence 33344444333321 2223333344445566888999999999999999999987 7889999999999999
Q ss_pred HhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEE
Q 010422 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (511)
Q Consensus 303 ~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~ 381 (511)
..|...|-.++.+|||||=++++|||.|||+.||+++ .|.|.+.|.|-+|||||.| +..|.
T Consensus 525 ~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~------------------lPks~E~YYQE~GRAGRDG~~s~C~ 586 (941)
T KOG0351|consen 525 ETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS------------------LPKSFEGYYQEAGRAGRDGLPSSCV 586 (941)
T ss_pred HHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC------------------CchhHHHHHHhccccCcCCCcceeE
Confidence 9999999999999999999999999999999999944 5999999999999999999 99999
Q ss_pred EecChhhHhh
Q 010422 382 RLYPENEFDK 391 (511)
Q Consensus 382 ~l~~~~~~~~ 391 (511)
.+|.-.++..
T Consensus 587 l~y~~~D~~~ 596 (941)
T KOG0351|consen 587 LLYGYADISE 596 (941)
T ss_pred EecchhHHHH
Confidence 9998887765
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=3.3e-27 Score=222.66 Aligned_cols=300 Identities=18% Similarity=0.209 Sum_probs=199.3
Q ss_pred HHHHHHHHHHH-hcCCEEEEEcCCCCchh--chHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCcc-----
Q 010422 16 ASVEKRLVEEV-RKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL----- 87 (511)
Q Consensus 16 ~~~q~~~~~~l-~~~~~~~i~apTGsGKT--t~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~----- 87 (511)
.+.|++++..+ ..++++.|+.|||+||| +++|.++.. + ..+++.|.-+++..+.+.+.... ..+
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~------g-ITIV~SPLiALIkDQiDHL~~LK-Vp~~SLNS 93 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG------G-ITIVISPLIALIKDQIDHLKRLK-VPCESLNS 93 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC------C-eEEEehHHHHHHHHHHHHHHhcC-CchhHhcc
Confidence 35788887775 56679999999999999 555554433 3 56777888888876665543221 110
Q ss_pred -------------------CCeeeEEEeecccCChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 88 -------------------GQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 88 -------------------~~~vg~~~~~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
...+=|...-...++....+..-+.. -..+.++++||+|+.+.|.+.+..-...+...|
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~--r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR 171 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN--RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLR 171 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh--hceeeeEEechhhhHhhhccccCcchhhhhhHH
Confidence 00111111100001111111111111 123689999999999999887766655555555
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhC----CCCeEEeCCcccc
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG----CAKAVHVQGRQFP 224 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~----~~~~~~~~~~~~~ 224 (511)
++. +++..++++||.+++.-.+.+. ..|+-.+....+.
T Consensus 172 S~~--------------------------------------~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR 213 (641)
T KOG0352|consen 172 SVC--------------------------------------PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR 213 (641)
T ss_pred hhC--------------------------------------CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh
Confidence 322 7889999999997765443321 2233333333333
Q ss_pred ccEEEcCCCCCchHHHHHHHHHHHhh----------c---CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010422 225 VEILYTLYPEPDYLDATLITIFQVHL----------D---EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (511)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (511)
-+.+|.... .+.+..-+..+.+... . ...|--||||.||++||+++-.|... +++..
T Consensus 214 ~NLFYD~~~-K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~ 283 (641)
T KOG0352|consen 214 DNLFYDNHM-KSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA---------GIPAM 283 (641)
T ss_pred hhhhHHHHH-HHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc---------CcchH
Confidence 333332110 1111111111111110 1 11456899999999999999999876 99999
Q ss_pred EccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccc
Q 010422 292 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 371 (511)
Q Consensus 292 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GR 371 (511)
.||+|+-..||.++.+...+++.-||+||..+.+|||-|+|++||+ || .+.+.+-|.|..||
T Consensus 284 AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~----------~~qn~AgYYQESGR 345 (641)
T KOG0352|consen 284 AYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WS----------PSQNLAGYYQESGR 345 (641)
T ss_pred HHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cC----------chhhhHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999 87 57788889999999
Q ss_pred cCCCC-CCeEEEecChhhHhh
Q 010422 372 AGREG-PGKCFRLYPENEFDK 391 (511)
Q Consensus 372 aGR~~-~G~~~~l~~~~~~~~ 391 (511)
|||.| +..|-..|+.++...
T Consensus 346 AGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 346 AGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred cccCCCccceeeeecccchHH
Confidence 99999 888888888776654
No 80
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=245.83 Aligned_cols=323 Identities=20% Similarity=0.242 Sum_probs=209.4
Q ss_pred cCCCHHHHHHHHH--HHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 12 SLPIASVEKRLVE--EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 12 ~l~~~~~q~~~~~--~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
....|..|.+.+. .+.++++++..+||+.|||.++.+.++.......+...++ .|....+..-...+..+. ...|.
T Consensus 221 i~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~lli-lp~vsiv~Ek~~~l~~~~-~~~G~ 298 (1008)
T KOG0950|consen 221 ILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLI-LPYVSIVQEKISALSPFS-IDLGF 298 (1008)
T ss_pred HHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEe-cceeehhHHHHhhhhhhc-cccCC
Confidence 3456778887653 4679999999999999999888888877766555544444 455444443333333222 12222
Q ss_pred ee-eEEEeecc--cC-----------ChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCC
Q 010422 90 RV-GYSIRFDD--RT-----------STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (511)
Q Consensus 90 ~v-g~~~~~~~--~~-----------~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~ 155 (511)
.+ +|..++.. .. .....+..++....+..+++||+||.| +
T Consensus 299 ~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh--------------------------m 352 (1008)
T KOG0950|consen 299 PVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH--------------------------M 352 (1008)
T ss_pred cchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee--------------------------e
Confidence 11 12211100 00 011122245555667789999999999 5
Q ss_pred CCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCccccccEEEcCCCC
Q 010422 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE 234 (511)
Q Consensus 156 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (511)
.++..+|+++|.++....-... ...+|+|+||||+ |.+.++.|+... ....+..|+...-...+.
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~-----------~~~~~iIGMSATi~N~~lL~~~L~A~---~y~t~fRPv~L~E~ik~G 418 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENL-----------ETSVQIIGMSATIPNNSLLQDWLDAF---VYTTRFRPVPLKEYIKPG 418 (1008)
T ss_pred eeccccchHHHHHHHHHHHhcc-----------ccceeEeeeecccCChHHHHHHhhhh---heecccCcccchhccCCC
Confidence 6666666666666654321111 1337899999999 999999999743 333444454433222221
Q ss_pred CchHH----HHHHHHHH----Hh-------------hc-CCCCcEEEEcCCHHHHHHHHHHHHHHHhcC-----------
Q 010422 235 PDYLD----ATLITIFQ----VH-------------LD-EAPGDILVFLTGQEEIESVERLVQERLLQL----------- 281 (511)
Q Consensus 235 ~~~~~----~~~~~~~~----~~-------------~~-~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~----------- 281 (511)
....+ ..+..+-. .. .. .++.++|||||+++.|+.++..+.......
T Consensus 419 ~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~ 498 (1008)
T KOG0950|consen 419 SLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWE 498 (1008)
T ss_pred cccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHH
Confidence 11111 11111110 00 00 114559999999999999997776554310
Q ss_pred -----------C-------CCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccc
Q 010422 282 -----------P-------EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 343 (511)
Q Consensus 282 -----------~-------~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~ 343 (511)
. .....+.+..+|+|++.++|+.++..|++|...|++||+++++|+|.|+.+++|..-+..
T Consensus 499 ~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g- 577 (1008)
T KOG0950|consen 499 LLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVG- 577 (1008)
T ss_pred HHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccc-
Confidence 0 113356789999999999999999999999999999999999999999999999643311
Q ss_pred eeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChhhHh
Q 010422 344 RLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFD 390 (511)
Q Consensus 344 ~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~ 390 (511)
....+..+|.||+|||||+| .|.++.++.+.+.+
T Consensus 578 -------------~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~ 614 (1008)
T KOG0950|consen 578 -------------REFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKK 614 (1008)
T ss_pred -------------cchhhhhhHHhhhhhhhhcccccCcceEEEeeccchh
Confidence 23577889999999999999 79999999777643
No 81
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=8.6e-26 Score=248.09 Aligned_cols=108 Identities=25% Similarity=0.458 Sum_probs=96.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC--------CCHHHHHhhcCcCCCCCeEEEEecccc
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMRVFAPAAAGFRKVILATNIA 323 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~i~~~f~~g~~~vlvaT~~~ 323 (511)
.+++++||||++++.++.+++.|... ++.+..+||. |++.+|..+++.|++|..+|||||+++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 433 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVA 433 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 45788999999999999999999654 5566666664 999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecCh
Q 010422 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (511)
Q Consensus 324 ~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 386 (511)
++|+|+|++++||+ || .|.+...|+||+||+||.++|.+|.++.+
T Consensus 434 ~eGldi~~~~~VI~--------yd----------~~~s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 434 EEGLDIPSVDLVIF--------YE----------PVPSEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred hcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 99999999999999 98 46788899999999999999999999853
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=3.3e-25 Score=238.04 Aligned_cols=293 Identities=17% Similarity=0.171 Sum_probs=174.9
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCcc-CCe
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL-GQR 90 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~-~~~ 90 (511)
.+.++++|+.+......+..++|.||||||||..+..++.......+...+++..|++..+.++.+++.+...... ...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5678999998754444567899999999999966544443322222245789999999999999998765321111 011
Q ss_pred eeEEEee-------cc----cC---C---h---------------------hhhHHHHh----hC--cCCCC----CCch
Q 010422 91 VGYSIRF-------DD----RT---S---T---------------------STRIKEAL----LD--PYLSR----YSAI 122 (511)
Q Consensus 91 vg~~~~~-------~~----~~---~---~---------------------~~~i~~~l----~~--~~l~~----~~~i 122 (511)
++..... .. .. . . .+.+..++ .. ..++. -++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 1111000 00 00 0 0 00011111 00 01111 2589
Q ss_pred hHhhhhhhhhhhHHHHH-HHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC
Q 010422 123 IVDEAHERTVHTDVLLG-LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL 201 (511)
Q Consensus 123 IiDE~H~r~~~~~~ll~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 201 (511)
||||+|..+..+..++. +++.+.. ...++|+||||+
T Consensus 444 IiDEVHAyD~ym~~lL~~~L~~l~~-------------------------------------------~g~~vIllSATL 480 (878)
T PRK09694 444 IVDEVHAYDAYMYGLLEAVLKAQAQ-------------------------------------------AGGSVILLSATL 480 (878)
T ss_pred EEechhhCCHHHHHHHHHHHHHHHh-------------------------------------------cCCcEEEEeCCC
Confidence 99999998877665444 3333222 345799999999
Q ss_pred CHHHHHhh---hCCC---------CeEEeCCc----cc---------c--ccEEEcCC--CCCchHHHHHHHHHHHhhcC
Q 010422 202 DARGFSEY---FGCA---------KAVHVQGR----QF---------P--VEILYTLY--PEPDYLDATLITIFQVHLDE 252 (511)
Q Consensus 202 ~~~~l~~~---~~~~---------~~~~~~~~----~~---------~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 252 (511)
+.....++ ++.. |.+...+. .+ + ..+..... ......+..+..+.... .
T Consensus 481 P~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~ 558 (878)
T PRK09694 481 PATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--N 558 (878)
T ss_pred CHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--h
Confidence 65433322 2221 11110000 00 0 00110000 00011123333333332 2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH----hhcCcC-CCCC---eEEEEeccccc
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM----RVFAPA-AAGF---RKVILATNIAE 324 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~----~i~~~f-~~g~---~~vlvaT~~~~ 324 (511)
.++++||||||++.++++++.|.+... ....+..+||.++..+|. ++++.| ++|+ .+|||||+++|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE 632 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE 632 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh
Confidence 477899999999999999999986521 135789999999999994 456677 6666 48999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 325 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 325 ~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
+|+|| +++++|. | ..+.+.++||+||+||.+
T Consensus 633 ~GLDI-d~DvlIt---------d-----------laPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 633 QSLDL-DFDWLIT---------Q-----------LCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred heeec-CCCeEEE---------C-----------CCCHHHHHHHHhccCCCC
Confidence 99999 5788885 1 344689999999999987
No 83
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=8.1e-27 Score=219.92 Aligned_cols=304 Identities=18% Similarity=0.221 Sum_probs=213.3
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc--cCCCeEEEEeCccHHHHHHHHHHHHHHh---CCcc
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEES---GVEL 87 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~~~~~---~~~~ 87 (511)
--++|+|+..++.+.++++++-.|-||||||..+.+.+.+... .+.+.+.+++.|++.++.|..+.+.+.- +...
T Consensus 42 ~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~ 121 (529)
T KOG0337|consen 42 NTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQ 121 (529)
T ss_pred CCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhh
Confidence 3488999999999999999999999999999555555544433 3346789999999999999887654332 1122
Q ss_pred CCeeeEEEe----------ecccCChhhhHHHHhh--CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCC
Q 010422 88 GQRVGYSIR----------FDDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (511)
Q Consensus 88 ~~~vg~~~~----------~~~~~~~~~~i~~~l~--~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~ 155 (511)
...+|+... .+....+..++..+.. +-.|+.+.++|+||+
T Consensus 122 s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa---------------------------- 173 (529)
T KOG0337|consen 122 SLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA---------------------------- 173 (529)
T ss_pred hhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh----------------------------
Confidence 222232100 0001111222221111 134788999999999
Q ss_pred CCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH--HHHhhhCCCC-eEEe--CCcccc-ccEEE
Q 010422 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFSEYFGCAK-AVHV--QGRQFP-VEILY 229 (511)
Q Consensus 156 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~l~~~~~~~~-~~~~--~~~~~~-~~~~~ 229 (511)
|.++.+++..++-+++.+++ .+.|.++||||++.. ++++-=...| .+.+ +.+..+ ++..+
T Consensus 174 ----------drlfemgfqeql~e~l~rl~----~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f 239 (529)
T KOG0337|consen 174 ----------DRLFEMGFQEQLHEILSRLP----ESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRF 239 (529)
T ss_pred ----------hHHHhhhhHHHHHHHHHhCC----CcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhhe
Confidence 57888888888888888888 455999999999433 4432211122 1221 111111 11122
Q ss_pred cCCCCCchHHHHHHHHHHHhhcC-CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCc
Q 010422 230 TLYPEPDYLDATLITIFQVHLDE-APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAP 308 (511)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 308 (511)
..... +.....++.+.... .+.+++||++|+.+++.+...+... ++.+..++|.|++.-|..-...
T Consensus 240 ~~~~~----a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 240 FRVRK----AEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred eeecc----HHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc---------CCCccccccccChHhhhhcccc
Confidence 21121 22333344443322 1457999999999999999999887 8888889999999999999999
Q ss_pred CCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 309 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 309 f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
|+.++..++|.|+++++|+|||-.+-||| || .|.+..-|+||+||+.|.| .|.+|.++..+
T Consensus 307 F~~~k~~~lvvTdvaaRG~diplldnvin--------yd----------~p~~~klFvhRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 307 FRGRKTSILVVTDVAARGLDIPLLDNVIN--------YD----------FPPDDKLFVHRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred ccCCccceEEEehhhhccCCCcccccccc--------cc----------CCCCCceEEEEecchhhccccceEEEEEecc
Confidence 99999999999999999999999999999 88 6888888999999999999 99999999665
Q ss_pred hH
Q 010422 388 EF 389 (511)
Q Consensus 388 ~~ 389 (511)
+.
T Consensus 369 ~~ 370 (529)
T KOG0337|consen 369 DD 370 (529)
T ss_pred cc
Confidence 43
No 84
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=6.1e-26 Score=251.90 Aligned_cols=307 Identities=16% Similarity=0.145 Sum_probs=179.2
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
..+.++++|+..+..+..|++++++||||||||+++..++... ..++.+++++.|++.++.|+.+.+..... ..+..
T Consensus 77 ~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l--~~~g~~alIL~PTreLa~Qi~~~l~~l~~-~~~~~ 153 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYL--AKKGKKSYIIFPTRLLVEQVVEKLEKFGE-KVGCG 153 (1176)
T ss_pred cCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEeccHHHHHHHHHHHHHHhh-hcCce
Confidence 3568999999999999999999999999999995432222211 12356799999999999999998776543 22222
Q ss_pred eeEEEee--------------------cccCChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhh---HHHHHH-------
Q 010422 91 VGYSIRF--------------------DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHT---DVLLGL------- 140 (511)
Q Consensus 91 vg~~~~~--------------------~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~---~~ll~~------- 140 (511)
+...... +-.+.+..++...+..-....++++|+||||....++ |.++.+
T Consensus 154 ~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~ 233 (1176)
T PRK09401 154 VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEED 233 (1176)
T ss_pred EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHH
Confidence 2211110 0011222333333322234459999999999533211 111110
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccc----cCCCCccEEEeccCCCHHHHH-hhhCCCCe
Q 010422 141 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG----RKFAPLKLIIMSASLDARGFS-EYFGCAKA 215 (511)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~i~~SAT~~~~~l~-~~~~~~~~ 215 (511)
+..+...- -.........+.+..+.. ....+.|++++|||++++.+. .++.+.-.
T Consensus 234 i~~i~~~i--------------------~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~ 293 (1176)
T PRK09401 234 IEKAMELI--------------------RLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG 293 (1176)
T ss_pred HHHHHHhc--------------------ccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce
Confidence 11111000 000000000111111111 011367899999999654322 22222212
Q ss_pred EEeCCcc---ccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH---HHHHHHHHHHHHhcCCCCCCCeE
Q 010422 216 VHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE---IESVERLVQERLLQLPEASRKLV 289 (511)
Q Consensus 216 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~---~~~l~~~l~~~~~~~~~~~~~~~ 289 (511)
+.+.... ..+...|.... +... .+..+.... +.++||||++++. ++++++.|.+. ++.
T Consensus 294 ~~v~~~~~~~rnI~~~yi~~~--~k~~----~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~ 357 (1176)
T PRK09401 294 FEVGSPVFYLRNIVDSYIVDE--DSVE----KLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GIN 357 (1176)
T ss_pred EEecCcccccCCceEEEEEcc--cHHH----HHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCc
Confidence 3333221 22333333222 2222 222222222 4579999999777 99999999886 899
Q ss_pred EEEccCCCCHHHHHhhcCcCCCCCeEEEEe----ccccccCCCCCC-eEEEEeCCcccceeecCCCCcccceeeecCHHH
Q 010422 290 TVPIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQ 364 (511)
Q Consensus 290 v~~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gvdip~-v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~ 364 (511)
+..+||+| ++ .++.|++|+.+|||| |++++||+|+|+ |++||++|..+.+. .......
T Consensus 358 v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~------------~~~~~~~ 420 (1176)
T PRK09401 358 AELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF------------SLEEELA 420 (1176)
T ss_pred EEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE------------ecccccc
Confidence 99999999 22 349999999999999 699999999999 89999955433221 0113456
Q ss_pred HHHhccccC
Q 010422 365 ALQRSGRAG 373 (511)
Q Consensus 365 ~~Qr~GRaG 373 (511)
+.||.||+-
T Consensus 421 ~~~~~~r~~ 429 (1176)
T PRK09401 421 PPFLLLRLL 429 (1176)
T ss_pred CHHHHHHHH
Confidence 888888873
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=9.5e-25 Score=228.27 Aligned_cols=293 Identities=16% Similarity=0.153 Sum_probs=178.0
Q ss_pred cCCCHHHHHHHHHHHhc-C--CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 010422 12 SLPIASVEKRLVEEVRK-N--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~-~--~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (511)
...+++||++++..+.. | +.-+|+.|||+|||.+...++... +..++|++|+..++.|..+.+.++......
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 45689999999998764 3 367899999999996665444332 345788889999999998888877543222
Q ss_pred CeeeEEEeecc--------cCChhhhHH----------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcc
Q 010422 89 QRVGYSIRFDD--------RTSTSTRIK----------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (511)
Q Consensus 89 ~~vg~~~~~~~--------~~~~~~~i~----------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~ 150 (511)
....+...... .+.+...+. ..+....-..++++|+||||.... ..+..++..+
T Consensus 328 ~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il~~l------ 399 (732)
T TIGR00603 328 QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRVLTIV------ 399 (732)
T ss_pred eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHHHHhc------
Confidence 11111100000 001111111 001101123678999999995422 1121111111
Q ss_pred ccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCC--HH---HHHhhhCCCCeEEeC------
Q 010422 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--AR---GFSEYFGCAKAVHVQ------ 219 (511)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~--~~---~l~~~~~~~~~~~~~------ 219 (511)
.....++||||+. -+ .+..++| ++....+
T Consensus 400 ---------------------------------------~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~ 439 (732)
T TIGR00603 400 ---------------------------------------QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQK 439 (732)
T ss_pred ---------------------------------------CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHh
Confidence 2235799999981 11 2222333 3222221
Q ss_pred -CccccccEE--EcCCCCC---chH-----------------HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHH
Q 010422 220 -GRQFPVEIL--YTLYPEP---DYL-----------------DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQE 276 (511)
Q Consensus 220 -~~~~~~~~~--~~~~~~~---~~~-----------------~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~ 276 (511)
|..-++... +...+.. .|+ -..+..++..+. ..+.++||||.+...++.+++.|
T Consensus 440 ~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L-- 516 (732)
T TIGR00603 440 KGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL-- 516 (732)
T ss_pred CCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc--
Confidence 222222211 1111100 011 011112333332 34778999999998888877765
Q ss_pred HHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-CeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccc
Q 010422 277 RLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESL 355 (511)
Q Consensus 277 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~ 355 (511)
+ +..+||++++.+|.++++.|++| .+++||+|+++.+|+|+|++++||+ +++.
T Consensus 517 ----------~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~------ 570 (732)
T TIGR00603 517 ----------G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSH------ 570 (732)
T ss_pred ----------C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCC------
Confidence 2 23479999999999999999865 7899999999999999999999998 6621
Q ss_pred eeeecCHHHHHHhccccCCCC-CCeE-------EEecChhhH
Q 010422 356 LVVPISKAQALQRSGRAGREG-PGKC-------FRLYPENEF 389 (511)
Q Consensus 356 ~~~p~s~~~~~Qr~GRaGR~~-~G~~-------~~l~~~~~~ 389 (511)
+-|..+|+||+||++|.+ .|.+ |.|++++..
T Consensus 571 ---~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 571 ---YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred ---CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 248899999999999998 4444 888865544
No 86
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.2e-24 Score=224.99 Aligned_cols=164 Identities=20% Similarity=0.207 Sum_probs=117.8
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEE---cCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILY---TLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 267 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~ 267 (511)
++.+||||. ..+++.++++-. ++.++.........+ ...+..+........+...+ ..+.++||||+|++.+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~-vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLP-VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCC-eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHH
Confidence 689999999 445677777654 444543221111111 11112222333333322222 2357899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCC---CeE-----EEEeCC
Q 010422 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIK-----YVIDPG 339 (511)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip---~v~-----~VI~~g 339 (511)
+.++..|.+. ++.+..+||++...++..+...+. ...|+||||+++||+||+ +|. +||+
T Consensus 487 e~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~-- 553 (656)
T PRK12898 487 ERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLEPGVAARGGLHVIL-- 553 (656)
T ss_pred HHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCccchhhcCCCEEEE--
Confidence 9999999886 889999999977666555555444 456999999999999999 776 9999
Q ss_pred cccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 340 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 340 ~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
|| .|.+...|.||+|||||.| +|.++.+++.++
T Consensus 554 ------~d----------~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 554 ------TE----------RHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred ------cC----------CCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 77 6999999999999999999 999999998754
No 87
>PRK14701 reverse gyrase; Provisional
Probab=99.93 E-value=2e-25 Score=252.82 Aligned_cols=319 Identities=15% Similarity=0.129 Sum_probs=187.9
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCc-cCC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE-LGQ 89 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~-~~~ 89 (511)
..+.++++|++++..+.+|++++++||||||||++...+.+.. ..++.+++++.|+++++.|+.+.+....... .+.
T Consensus 76 ~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~--~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v 153 (1638)
T PRK14701 76 TGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL--ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDV 153 (1638)
T ss_pred hCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH--HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCce
Confidence 4558999999999999999999999999999997322222211 1135578899999999999999877654211 112
Q ss_pred eeeEEEeecccCChh---------------------hhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 90 RVGYSIRFDDRTSTS---------------------TRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 90 ~vg~~~~~~~~~~~~---------------------~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
.+.+.. +..+.. ..+...+......+++++|+||||+...++.
T Consensus 154 ~v~~~~---g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~k------------- 217 (1638)
T PRK14701 154 RLVYYH---SNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASK------------- 217 (1638)
T ss_pred eEEEEe---CCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecccccc-------------
Confidence 222211 111111 1111111111125689999999996533211
Q ss_pred ccccCCCCCCCCCCCCchhhhc-cCCCCCCcc----c------------------cccccccCCCCcc-EEEeccCCCH-
Q 010422 149 SKSADGHSNGNNNNENSDMILD-RGNDTNGIN----T------------------LKQCQGRKFAPLK-LIIMSASLDA- 203 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~----~------------------~~~~~~~~~~~~~-~i~~SAT~~~- 203 (511)
+.|.+++ .+|...... + +...........+ ++++|||+++
T Consensus 218 ---------------nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r 282 (1638)
T PRK14701 218 ---------------NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK 282 (1638)
T ss_pred ---------------ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch
Confidence 1111111 111111110 0 0000001112334 6779999965
Q ss_pred HHHHhhhCCCCeEEeCCccc---cccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH---HHHHHHHHHH
Q 010422 204 RGFSEYFGCAKAVHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI---ESVERLVQER 277 (511)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~---~~l~~~l~~~ 277 (511)
.....++...-.+.+..... .+...|.... ..... .+..+.... +.++||||+|++.+ +++++.|.+.
T Consensus 283 ~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~-~~~k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~ 356 (1638)
T PRK14701 283 GDRVKLYRELLGFEVGSGRSALRNIVDVYLNPE-KIIKE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED 356 (1638)
T ss_pred hHHHHHhhcCeEEEecCCCCCCCCcEEEEEECC-HHHHH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC
Confidence 34555665444444443321 2222332211 11111 233333333 46799999998864 8889999876
Q ss_pred HhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEec----cccccCCCCCC-eEEEEeCCccccee----ecC
Q 010422 278 LLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT----NIAETSVTIPG-IKYVIDPGFVKARL----YDP 348 (511)
Q Consensus 278 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT----~~~~~Gvdip~-v~~VI~~g~~~~~~----yd~ 348 (511)
++.+..+||+ |...++.|++|+.+||||| ++++||||+|+ |++||+.|..+.+. |..
T Consensus 357 ---------Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~ 422 (1638)
T PRK14701 357 ---------GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDP 422 (1638)
T ss_pred ---------CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhccc
Confidence 8999999985 8899999999999999999 59999999999 99999966544220 111
Q ss_pred CCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 349 VKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 349 ~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
.... .+. .....++.|||||.| ++.++..+..++
T Consensus 423 ~~~~-----~~~-~~~~~~~~~~a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 423 TIYR-----ILG-LLSEILKIEEELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred chhh-----hhc-chHHHHHhhhhcccCCcchhHHHhHHHH
Confidence 0000 000 233566779999999 777765443333
No 88
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.2e-24 Score=219.98 Aligned_cols=299 Identities=18% Similarity=0.211 Sum_probs=207.9
Q ss_pred ccCCCHHHHHHHHHHHhcC------CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 11 KSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~------~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
-.|.++..|+.++..|..+ .+=++.|.-|||||.++...++..... |.++.+..||..+|.|.+..+.+++.
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--G~Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--GYQAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--CCeeEEeccHHHHHHHHHHHHHHHhh
Confidence 4566899999999888754 245899999999997776666655433 56788999999999999999888775
Q ss_pred CccCCeeeEEEeecccCChhhhHH--------------HHhh-CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 85 VELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~~~~~~~~i~--------------~~l~-~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
..+..+++.............+. .++. +-.+.++.++|+||=|...+..-..
T Consensus 337 -~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~------------ 403 (677)
T COG1200 337 -PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLA------------ 403 (677)
T ss_pred -hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHH------------
Confidence 34455655433211111111111 1122 2347889999999999654433111
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCC-CccEEEeccCCCHHHHH-hhhCCCCeEEeC---Ccccc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFA-PLKLIIMSASLDARGFS-EYFGCAKAVHVQ---GRQFP 224 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~l~-~~~~~~~~~~~~---~~~~~ 224 (511)
+.+.+ . .+.++.||||+=+..++ ..||+-.+-.+. .-.-|
T Consensus 404 ------------------L~~KG-----------------~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkp 448 (677)
T COG1200 404 ------------------LREKG-----------------EQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKP 448 (677)
T ss_pred ------------------HHHhC-----------------CCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCc
Confidence 11111 3 57899999999666666 566665433333 22345
Q ss_pred ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH--------HHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 010422 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI--------ESVERLVQERLLQLPEASRKLVTVPIFSS 296 (511)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~--------~~l~~~l~~~~~~~~~~~~~~~v~~lh~~ 296 (511)
+........ ..+..+..+..-.. .+.++.|-||-.++. ++++..|...+ +++.+..+||.
T Consensus 449 I~T~~i~~~---~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~-------~~~~vgL~HGr 516 (677)
T COG1200 449 ITTVVIPHE---RRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFL-------PELKVGLVHGR 516 (677)
T ss_pred eEEEEeccc---cHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHc-------ccceeEEEecC
Confidence 555554433 23333443333333 378899999976544 44555555433 37889999999
Q ss_pred CCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
|+.++++++++.|++|+.+|||||.+.|.|||+|+.++.|- +|+. ..-.++..|-+||+||.+
T Consensus 517 m~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AE---------RFGLaQLHQLRGRVGRG~ 579 (677)
T COG1200 517 MKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAE---------RFGLAQLHQLRGRVGRGD 579 (677)
T ss_pred CChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echh---------hhhHHHHHHhccccCCCC
Confidence 99999999999999999999999999999999999998775 6642 356788999999999999
Q ss_pred -CCeEEEecChhh
Q 010422 377 -PGKCFRLYPENE 388 (511)
Q Consensus 377 -~G~~~~l~~~~~ 388 (511)
++.|+.++....
T Consensus 580 ~qSyC~Ll~~~~~ 592 (677)
T COG1200 580 LQSYCVLLYKPPL 592 (677)
T ss_pred cceEEEEEeCCCC
Confidence 999999996543
No 89
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.92 E-value=1e-23 Score=220.60 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=119.7
Q ss_pred ccEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCC----CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHH
Q 010422 192 LKLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQE 265 (511)
Q Consensus 192 ~~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~ 265 (511)
.++.+||.|. ..++|.+.++ -.++.+|... |....-.+. ...+...+.+..+...+ ..+.++||||+|++
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY~-l~v~~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~ 435 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETYS-LSVVKIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVE 435 (762)
T ss_pred chhcccCCCChhHHHHHHHHhC-CCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHH
Confidence 3688999998 3455666554 4556655432 211111111 11122333333333333 34788999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCC---------CeEEEE
Q 010422 266 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---------GIKYVI 336 (511)
Q Consensus 266 ~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip---------~v~~VI 336 (511)
.++.++..|.+. ++.+..+||.+.+.++..+..+++.| .|+||||+++||+||| ++.+|+
T Consensus 436 ~se~ls~~L~~~---------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIi 504 (762)
T TIGR03714 436 MSEIYSELLLRE---------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIG 504 (762)
T ss_pred HHHHHHHHHHHC---------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEE
Confidence 999999999886 88899999999999998888888777 7999999999999999 999999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 337 ~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
+ |+ .|....+ .||+|||||.| +|.++.+++.++
T Consensus 505 t--------~~----------~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 505 T--------ER----------MENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred e--------cC----------CCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 8 77 3444444 99999999999 999999997654
No 90
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=7.9e-24 Score=223.51 Aligned_cols=163 Identities=21% Similarity=0.292 Sum_probs=121.4
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCC----CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
++.+||.|. ..++|.+.++ .+++.+|... |....-.+. ...+.....+..+...+ ..+.++||||+|++.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~-l~v~~IPt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYN-MEVVQIPTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHHHHHHHHhC-CcEEECCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHH
Confidence 678999998 3345555553 4556665432 221111110 11222233333332322 347889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCC---CCeE-----EEEeC
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTI---PGIK-----YVIDP 338 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdi---p~v~-----~VI~~ 338 (511)
++.++..|.+. ++.+..+||.+...++..+..++..| +|+||||+|+||+|| |+|. +||+
T Consensus 441 se~l~~~L~~~---------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~- 508 (790)
T PRK09200 441 SETFSKLLDEA---------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG- 508 (790)
T ss_pred HHHHHHHHHHC---------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe-
Confidence 99999999886 88999999999999988888888766 799999999999999 7998 9999
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
|| .|.+...|.||+|||||.| +|.++.+++.++
T Consensus 509 -------~d----------~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 509 -------TE----------RMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred -------cc----------CCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 77 6999999999999999999 999999987654
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.92 E-value=2.2e-24 Score=230.14 Aligned_cols=311 Identities=20% Similarity=0.191 Sum_probs=190.7
Q ss_pred cCCCHHHHHHHHHHHhcC---CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 010422 12 SLPIASVEKRLVEEVRKN---DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~---~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (511)
...+++.|++++..+.++ +++++.||||||||..+..++..... .+.+++++.|++.++.|+.+++.+.++..
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~-- 217 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--QGKQALVLVPEIALTPQMLARFRARFGAP-- 217 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhCCC--
Confidence 345789999999999874 78999999999999666555443322 25578999999999999999988766532
Q ss_pred CeeeEEEeecccCChhhhHHH---HhhC-------------cCCCCCCchhHhhhhhhhhhhHHHHHH-HHHHHHhhccc
Q 010422 89 QRVGYSIRFDDRTSTSTRIKE---ALLD-------------PYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSKS 151 (511)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~i~~---~l~~-------------~~l~~~~~iIiDE~H~r~~~~~~ll~~-l~~~~~~~~~~ 151 (511)
+... .+..+...+... +... ..+.+++++|+||+|+.+...+.-..+ .+++...|.
T Consensus 218 --v~~~---~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra-- 290 (679)
T PRK05580 218 --VAVL---HSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA-- 290 (679)
T ss_pred --EEEE---ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh--
Confidence 2211 222222222111 1110 126789999999999644332211000 111111110
Q ss_pred cCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhC-CCCeEEeCCcc----cc-c
Q 010422 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQ----FP-V 225 (511)
Q Consensus 152 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~-~~~~~~~~~~~----~~-~ 225 (511)
...+.+++++|||+..+.+..... ....+....+. .| +
T Consensus 291 ------------------------------------~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v 334 (679)
T PRK05580 291 ------------------------------------KLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEV 334 (679)
T ss_pred ------------------------------------hccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeE
Confidence 016789999999998877765432 22333333332 22 1
Q ss_pred cEEEcCCC----C-CchHHHHHHHHHHHhhcCCCCcEEEEcCCHH-----------------------------------
Q 010422 226 EILYTLYP----E-PDYLDATLITIFQVHLDEAPGDILVFLTGQE----------------------------------- 265 (511)
Q Consensus 226 ~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~----------------------------------- 265 (511)
.+...... . ...-...+..+.+.. ..+.++|||+|.+.
T Consensus 335 ~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch 412 (679)
T PRK05580 335 EIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCH 412 (679)
T ss_pred EEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECC
Confidence 11111100 0 001122222222222 22568999988642
Q ss_pred -------------------------HHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCH--HHHHhhcCcCCCCCeEEEE
Q 010422 266 -------------------------EIESVERLVQERLLQLPEASRKLVTVPIFSSLPS--EQQMRVFAPAAAGFRKVIL 318 (511)
Q Consensus 266 -------------------------~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~--~~r~~i~~~f~~g~~~vlv 318 (511)
.++.+++.|.+.+ ++..+..+|+++.. ++++++++.|++|+.+|||
T Consensus 413 ~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f-------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILV 485 (679)
T PRK05580 413 HCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF-------PEARILRIDRDTTRRKGALEQLLAQFARGEADILI 485 (679)
T ss_pred CCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEE
Confidence 4455555555543 26678899999864 5789999999999999999
Q ss_pred eccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEec
Q 010422 319 ATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (511)
Q Consensus 319 aT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (511)
+|+++++|+|+|+++.|+-.. .|...+..++...-.....+.|++|||||.+ .|.++...
T Consensus 486 gT~~iakG~d~p~v~lV~il~------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT 546 (679)
T PRK05580 486 GTQMLAKGHDFPNVTLVGVLD------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQT 546 (679)
T ss_pred EChhhccCCCCCCcCEEEEEc------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEe
Confidence 999999999999999885311 4432222222222334577999999999987 89888543
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=5.4e-24 Score=219.23 Aligned_cols=286 Identities=21% Similarity=0.198 Sum_probs=175.8
Q ss_pred EEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHHHHh-
Q 010422 33 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEAL- 111 (511)
Q Consensus 33 ~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~l- 111 (511)
++.||||||||.++..++.... . .+.+++++.|+..++.|..+++.+.++.. +.. ..+..+...+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~-~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~----v~v---lhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A-LGKSVLVLVPEIALTPQMIQRFKYRFGSQ----VAV---LHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H-cCCeEEEEeCcHHHHHHHHHHHHHHhCCc----EEE---EECCCCHHHHHHHHHH
Confidence 4789999999966544443332 2 25578899999999999999988766532 221 123333322222111
Q ss_pred --h-------------CcCCCCCCchhHhhhhhhhhhhHHHHHH-HHHHHHhhccccCCCCCCCCCCCCchhhhccCCCC
Q 010422 112 --L-------------DPYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDT 175 (511)
Q Consensus 112 --~-------------~~~l~~~~~iIiDE~H~r~~~~~~ll~~-l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 175 (511)
. -..+.++++|||||.|+.+...+....+ .+++...|.+
T Consensus 72 ~~~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~------------------------- 126 (505)
T TIGR00595 72 VKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK------------------------- 126 (505)
T ss_pred HHcCCCCEEECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-------------------------
Confidence 0 0126789999999999755433221110 1111111100
Q ss_pred CCccccccccccCCCCccEEEeccCCCHHHHHhhhCCC-CeEEeCCc----ccc-ccEEEcCCCC-CchH-HHHHHHHHH
Q 010422 176 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCA-KAVHVQGR----QFP-VEILYTLYPE-PDYL-DATLITIFQ 247 (511)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~-~~~~~~~~----~~~-~~~~~~~~~~-~~~~-~~~~~~~~~ 247 (511)
..+.++|++|||+..+.+.....+. ..+..+.+ ..| +.+....... ...+ ...+..+.+
T Consensus 127 -------------~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~ 193 (505)
T TIGR00595 127 -------------KFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQ 193 (505)
T ss_pred -------------hcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHH
Confidence 1578999999999888776554322 22222221 122 1111111111 0111 223333333
Q ss_pred HhhcCCCCcEEEEcCCHHH------------------------------------------------------------H
Q 010422 248 VHLDEAPGDILVFLTGQEE------------------------------------------------------------I 267 (511)
Q Consensus 248 ~~~~~~~~~~LVF~~s~~~------------------------------------------------------------~ 267 (511)
... .++++|||+|++.- +
T Consensus 194 ~l~--~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gt 271 (505)
T TIGR00595 194 TLA--AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGT 271 (505)
T ss_pred HHH--cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccH
Confidence 322 26789999887642 4
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHH--HhhcCcCCCCCeEEEEeccccccCCCCCCeEEEE--eCCcccc
Q 010422 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ--MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI--DPGFVKA 343 (511)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r--~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI--~~g~~~~ 343 (511)
+++++.|.+.+. +..+..+|++++..++ +++++.|++|+.+|||+|+++++|+|+|+|+.|+ |
T Consensus 272 e~~~e~l~~~fp-------~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~------ 338 (505)
T TIGR00595 272 EQVEEELAKLFP-------GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD------ 338 (505)
T ss_pred HHHHHHHHhhCC-------CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc------
Confidence 666666666543 6789999999987765 8899999999999999999999999999999874 5
Q ss_pred eeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEE
Q 010422 344 RLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (511)
Q Consensus 344 ~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (511)
+|...+..++.........+.|++|||||.+ .|.++.
T Consensus 339 --aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 339 --ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred --CcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 5533333332222344677999999999988 898884
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=4e-23 Score=190.55 Aligned_cols=296 Identities=18% Similarity=0.233 Sum_probs=189.8
Q ss_pred CHHHHHH----HHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC-CccCC
Q 010422 15 IASVEKR----LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG-VELGQ 89 (511)
Q Consensus 15 ~~~~q~~----~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~-~~~~~ 89 (511)
+.+.|+. ++..+.+.+..+|.|-||+|||..+-+.+-.... .|.++.+..|+-..+.+.+.|+.+.+. ..+..
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~--~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~ 175 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN--QGGRVCIASPRVDVCLELYPRLKQAFSNCDIDL 175 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh--cCCeEEEecCcccchHHHHHHHHHhhccCCeee
Confidence 3455554 4555678899999999999999665544433322 266899999999999999999877664 33322
Q ss_pred eeeEEEee-cccCChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhh
Q 010422 90 RVGYSIRF-DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMI 168 (511)
Q Consensus 90 ~vg~~~~~-~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 168 (511)
.-|-.... .......+. ..++ .+-..++++||||++..+...|..+...-+-...
T Consensus 176 Lyg~S~~~fr~plvVaTt-HQLl--rFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark--------------------- 231 (441)
T COG4098 176 LYGDSDSYFRAPLVVATT-HQLL--RFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK--------------------- 231 (441)
T ss_pred EecCCchhccccEEEEeh-HHHH--HHHhhccEEEEeccccccccCCHHHHHHHHHhhc---------------------
Confidence 22211000 000000000 0111 1234589999999998777777666553322111
Q ss_pred hccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhh-CCCCeEEeCCcccc----ccEEEcCCCCC-----chH
Q 010422 169 LDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQFP----VEILYTLYPEP-----DYL 238 (511)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~-----~~~ 238 (511)
..--.|.||||...+.-.+.. ++...+.++.+.+. +....-..+.. +.+
T Consensus 232 ---------------------~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl 290 (441)
T COG4098 232 ---------------------KEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKL 290 (441)
T ss_pred ---------------------ccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccC
Confidence 445689999997544333333 23334556655432 22221111111 122
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEE
Q 010422 239 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVIL 318 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 318 (511)
..++...+..+.. .+.++|||+|+.+..++++..|.+.+. ...+..+|+. .+.|.+..+.|++|+.++||
T Consensus 291 ~~kl~~~lekq~~-~~~P~liF~p~I~~~eq~a~~lk~~~~-------~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLi 360 (441)
T COG4098 291 PLKLKRWLEKQRK-TGRPVLIFFPEIETMEQVAAALKKKLP-------KETIASVHSE--DQHRKEKVEAFRDGKITLLI 360 (441)
T ss_pred CHHHHHHHHHHHh-cCCcEEEEecchHHHHHHHHHHHhhCC-------ccceeeeecc--CccHHHHHHHHHcCceEEEE
Confidence 2233344443333 378999999999999999999977543 5566777876 35788899999999999999
Q ss_pred eccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEe
Q 010422 319 ATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRL 383 (511)
Q Consensus 319 aT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l 383 (511)
+|.++|+|+++|+|+++| .+... .-.+.+..+|.+||+||.- .|..+.+
T Consensus 361 TTTILERGVTfp~vdV~V---------lgaeh-------~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 361 TTTILERGVTFPNVDVFV---------LGAEH-------RVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred EeehhhcccccccceEEE---------ecCCc-------ccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 999999999999999988 33222 2467899999999999976 5655444
No 94
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.91 E-value=8.6e-23 Score=212.31 Aligned_cols=164 Identities=23% Similarity=0.225 Sum_probs=123.6
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCC---CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 267 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~ 267 (511)
++.+||.|. ..+.|.+.++ -+++.+|.........+... ...+...+.+..+...+ ..+.++||||+|.+.+
T Consensus 342 kl~GmTGTa~te~~E~~~iY~-l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~s 418 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYN-LEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKS 418 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhC-CCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHH
Confidence 678999998 4445666664 44555554321111111100 11223334444444444 3478899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCC-------eEEEEeCCc
Q 010422 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG-------IKYVIDPGF 340 (511)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~-------v~~VI~~g~ 340 (511)
+.+++.|.+. ++....+|+. +.+|+..+..|+.+...|+||||+|+||+||+. ..+||+
T Consensus 419 e~ls~~L~~~---------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~--- 484 (745)
T TIGR00963 419 ELLSNLLKER---------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG--- 484 (745)
T ss_pred HHHHHHHHHc---------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe---
Confidence 9999999987 8888899998 778899999999999999999999999999998 459998
Q ss_pred ccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 341 VKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 341 ~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
|+ .|.|...+.||+|||||.| +|.+..+++.++
T Consensus 485 -----t~----------~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 485 -----TE----------RHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred -----cC----------CCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 66 6999999999999999999 999998887654
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=3.6e-23 Score=230.25 Aligned_cols=294 Identities=19% Similarity=0.230 Sum_probs=168.3
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
.....++++|+..+..+..|++++++||||||||+++..++... ...+.+++++.|++.++.|+.+.+.+.... .+.
T Consensus 74 ~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l--~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~-~~i 150 (1171)
T TIGR01054 74 AVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFL--AKKGKRCYIILPTTLLVIQVAEKISSLAEK-AGV 150 (1171)
T ss_pred hcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCHHHHHHHHHHHHHHHHHh-cCC
Confidence 35568999999999999999999999999999996432222211 123567999999999999999887765431 111
Q ss_pred ---eeeEEEee------------------cccCChhhhHHHHhhCcCCC-CCCchhHhhhhhhhhhh---HHHHHH----
Q 010422 90 ---RVGYSIRF------------------DDRTSTSTRIKEALLDPYLS-RYSAIIVDEAHERTVHT---DVLLGL---- 140 (511)
Q Consensus 90 ---~vg~~~~~------------------~~~~~~~~~i~~~l~~~~l~-~~~~iIiDE~H~r~~~~---~~ll~~---- 140 (511)
.+++.... +-.+.+...+...+.. +. +++++|+||||...... |.++.+
T Consensus 151 ~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~~~~~iVvDEaD~~L~~~k~vd~il~llGF~ 228 (1171)
T TIGR01054 151 GTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGPKFDFIFVDDVDALLKASKNVDKLLKLLGFS 228 (1171)
T ss_pred ceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcCCCCEEEEeChHhhhhccccHHHHHHHcCCC
Confidence 12211110 0001112222222111 22 79999999999543221 111110
Q ss_pred ---HHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHH-hhhCCCCeE
Q 010422 141 ---LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKAV 216 (511)
Q Consensus 141 ---l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~-~~~~~~~~~ 216 (511)
+..+...-. + .......+ .-......+..++.. ....++++|||..+.... .++...-.+
T Consensus 229 ~e~i~~il~~~~-~-------~~~~~~~~------~~~~~~~~~~~~~~~--~q~~li~~SAT~~p~~~~~~l~r~ll~~ 292 (1171)
T TIGR01054 229 EELIEKAWKLIR-L-------RLKLYRAL------HAKKRLELLEAIPGK--KRGCLIVSSATGRPRGKRAKLFRELLGF 292 (1171)
T ss_pred HHHHHHHHHHhh-h-------ccccchHH------HHHHHHHHHHhhhhc--cCcEEEEEeCCCCccccHHHHcccccce
Confidence 111000000 0 00000000 000001111122110 122367789996332222 333332223
Q ss_pred EeCCcc---ccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCH---HHHHHHHHHHHHHHhcCCCCCCCeEE
Q 010422 217 HVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ---EEIESVERLVQERLLQLPEASRKLVT 290 (511)
Q Consensus 217 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~---~~~~~l~~~l~~~~~~~~~~~~~~~v 290 (511)
.+.... ..+...|.... ..... +..+.... +.++||||+++ +.+++++..|.+. ++.+
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~--~~~~~----L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a 356 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDE--DLKET----LLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKA 356 (1171)
T ss_pred EecCccccccceEEEEEecc--cHHHH----HHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceE
Confidence 333222 12333333221 11222 22222222 46799999999 9999999999876 8899
Q ss_pred EEccCCCCHHHHHhhcCcCCCCCeEEEEe----ccccccCCCCCC-eEEEEeCCcccce
Q 010422 291 VPIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKAR 344 (511)
Q Consensus 291 ~~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gvdip~-v~~VI~~g~~~~~ 344 (511)
..+||+++. .+++.|++|+.+|||| |++++||+|+|+ |++||++|..+.+
T Consensus 357 ~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 357 VAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred EEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 999999973 6889999999999999 599999999999 8999998887654
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=1.5e-22 Score=215.77 Aligned_cols=302 Identities=21% Similarity=0.256 Sum_probs=220.4
Q ss_pred HHHhhccCCCHHHHHHHHHHHhc----CC--EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHH
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRK----ND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 79 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~----~~--~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 79 (511)
.......|.-++=|..+++.+.+ ++ +=+|||.-|=|||-++.-+++..... |+++.++.||..+++|..+.+
T Consensus 586 ~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--GKQVAvLVPTTlLA~QHy~tF 663 (1139)
T COG1197 586 EFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--GKQVAVLVPTTLLAQQHYETF 663 (1139)
T ss_pred HHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--CCeEEEEcccHHhHHHHHHHH
Confidence 33344455567778777777753 33 56999999999998888877776654 678999999999999999998
Q ss_pred HHHhCCccCCeeeEEEeecccCChhhhHH--------------HHhh-CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHH
Q 010422 80 AEESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (511)
Q Consensus 80 ~~~~~~~~~~~vg~~~~~~~~~~~~~~i~--------------~~l~-~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~ 144 (511)
.+.+. .+...|+...++.+.......++ .++. +-.+.+++++||||-|...+....-+.-++
T Consensus 664 keRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr-- 740 (1139)
T COG1197 664 KERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELR-- 740 (1139)
T ss_pred HHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHHHHHHHh--
Confidence 77664 44556665555444332222222 2222 345789999999999977776655554443
Q ss_pred HHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCC---CeEEe-CC
Q 010422 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCA---KAVHV-QG 220 (511)
Q Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~---~~~~~-~~ 220 (511)
.++.++-||||+=+..+.--+.+. .++.. |.
T Consensus 741 ---------------------------------------------~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~ 775 (1139)
T COG1197 741 ---------------------------------------------ANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE 775 (1139)
T ss_pred ---------------------------------------------ccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC
Confidence 678999999999555554333222 22222 34
Q ss_pred ccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH
Q 010422 221 RQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (511)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~ 300 (511)
+.+|+..+..+....-..++....+. .+|++-.-.|..+++++++..|++..+ ...+..-||.|+..
T Consensus 776 ~R~pV~T~V~~~d~~~ireAI~REl~------RgGQvfYv~NrV~~Ie~~~~~L~~LVP-------EarI~vaHGQM~e~ 842 (1139)
T COG1197 776 DRLPVKTFVSEYDDLLIREAILRELL------RGGQVFYVHNRVESIEKKAERLRELVP-------EARIAVAHGQMRER 842 (1139)
T ss_pred CCcceEEEEecCChHHHHHHHHHHHh------cCCEEEEEecchhhHHHHHHHHHHhCC-------ceEEEEeecCCCHH
Confidence 55677766655444332233333222 289999999999999999999998754 67788889999999
Q ss_pred HHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCe
Q 010422 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (511)
Q Consensus 301 ~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~ 379 (511)
+-+.++..|-+|+.+|||||.+.|.|||||+.+.+|- .+. .-...++..|..||+||.. .|.
T Consensus 843 eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~A---------D~fGLsQLyQLRGRVGRS~~~AY 905 (1139)
T COG1197 843 ELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERA---------DKFGLAQLYQLRGRVGRSNKQAY 905 (1139)
T ss_pred HHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecc---------ccccHHHHHHhccccCCccceEE
Confidence 9999999999999999999999999999999998873 211 1355688999999999999 999
Q ss_pred EEEecChh
Q 010422 380 CFRLYPEN 387 (511)
Q Consensus 380 ~~~l~~~~ 387 (511)
||.+|+..
T Consensus 906 AYfl~p~~ 913 (1139)
T COG1197 906 AYFLYPPQ 913 (1139)
T ss_pred EEEeecCc
Confidence 99999753
No 97
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=189.57 Aligned_cols=302 Identities=18% Similarity=0.215 Sum_probs=199.3
Q ss_pred CHHHHHHHHHHHhcCCEEEEEcCCCCchh--chHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC---
Q 010422 15 IASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ--- 89 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKT--t~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~--- 89 (511)
-+|.|.+.+.+...|+.++++.|||.||| +++|.+..+ + ..+++.|.-.+...+.-.+.+ .+.....
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad------g-~alvi~plislmedqil~lkq-lgi~as~lna 166 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD------G-FALVICPLISLMEDQILQLKQ-LGIDASMLNA 166 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC------C-ceEeechhHHHHHHHHHHHHH-hCcchhhccC
Confidence 45789999999999999999999999999 556555443 2 466777776666544333222 1111000
Q ss_pred eee-------------EEEeecccCChhhhHH---HHhh----CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 90 RVG-------------YSIRFDDRTSTSTRIK---EALL----DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 90 ~vg-------------~~~~~~~~~~~~~~i~---~~l~----~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
... -...+.-...+++++. .+++ .-....+..+-+||+|+-+.|.+.+..-.+.+.-..
T Consensus 167 nsske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk- 245 (695)
T KOG0353|consen 167 NSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK- 245 (695)
T ss_pred cccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH-
Confidence 000 0000000001111111 1111 112345688999999999888776654443332111
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH---HHHHhhhCCCCeEEeCCcccccc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAKAVHVQGRQFPVE 226 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~---~~l~~~~~~~~~~~~~~~~~~~~ 226 (511)
+. .++..+++++||... .+..+.++-...+.+........
T Consensus 246 ---------------------rq----------------f~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~n 288 (695)
T KOG0353|consen 246 ---------------------RQ----------------FKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPN 288 (695)
T ss_pred ---------------------Hh----------------CCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCC
Confidence 11 177899999999822 23334443333333333333334
Q ss_pred EEEcCCCCCchHHHHHHHHHHHhh-cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhh
Q 010422 227 ILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV 305 (511)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 305 (511)
..|.....+...+..++.+..... ...+...+|||-|+++++.++..|... ++....||+.|.++++..+
T Consensus 289 l~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 289 LKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGA 359 (695)
T ss_pred ceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCccccccc
Confidence 555444444444555554444433 334556899999999999999999987 8999999999999999999
Q ss_pred cCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHH------------------
Q 010422 306 FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ------------------ 367 (511)
Q Consensus 306 ~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Q------------------ 367 (511)
-+..-.|++.|+|||-.+.+|||-|+|++||+ .. .|.|.++|.|
T Consensus 360 hq~w~a~eiqvivatvafgmgidkpdvrfvih--------hs----------l~ksienyyqasarillrmtkqknksdt 421 (695)
T KOG0353|consen 360 HQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH--------HS----------LPKSIENYYQASARILLRMTKQKNKSDT 421 (695)
T ss_pred cccccccceEEEEEEeeecccCCCCCeeEEEe--------cc----------cchhHHHHHHHHHHHHHHHhhhcccccC
Confidence 99999999999999999999999999999998 32 5888899999
Q ss_pred -------------------------hccccCCCC-CCeEEEecChhhH
Q 010422 368 -------------------------RSGRAGREG-PGKCFRLYPENEF 389 (511)
Q Consensus 368 -------------------------r~GRaGR~~-~G~~~~l~~~~~~ 389 (511)
..|||||.+ +..|+..|.-.+.
T Consensus 422 ggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 422 GGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred CCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 889999999 8899988865443
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.90 E-value=2.1e-22 Score=205.02 Aligned_cols=286 Identities=17% Similarity=0.190 Sum_probs=182.5
Q ss_pred hccCCCHHHHHHHHHHHhc----CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 10 RKSLPIASVEKRLVEEVRK----NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~----~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
...+.++++|++++.++.+ ++..+++.|||+|||.++..++.... ..++++.|++.++.|..+++.+....
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-----CCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 4456689999999999988 88999999999999987777766553 23889999999999998777666654
Q ss_pred c--cCCeeeEEEeecc---cCChhhhHHH--HhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCC
Q 010422 86 E--LGQRVGYSIRFDD---RTSTSTRIKE--ALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 158 (511)
Q Consensus 86 ~--~~~~vg~~~~~~~---~~~~~~~i~~--~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 158 (511)
. .+..-|....... .+.+...+.. .+......++++||+||||.....+.. .++...
T Consensus 107 ~~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~-------------- 170 (442)
T COG1061 107 NDEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELL-------------- 170 (442)
T ss_pred ccccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHHHhh--------------
Confidence 3 2222221111111 1111111111 122223336999999999964443221 111111
Q ss_pred CCCCCCchhhhccCCCCCCccccccccccCCCCcc-EEEeccCC---CHHH---HHhhhCCCCeEEeC-------Ccccc
Q 010422 159 NNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLK-LIIMSASL---DARG---FSEYFGCAKAVHVQ-------GRQFP 224 (511)
Q Consensus 159 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~SAT~---~~~~---l~~~~~~~~~~~~~-------~~~~~ 224 (511)
.... +++||||+ |... +...+| ..+.... +...|
T Consensus 171 -------------------------------~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap 218 (442)
T COG1061 171 -------------------------------SAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAP 218 (442)
T ss_pred -------------------------------hcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccc
Confidence 2233 89999997 3222 223333 2222221 22222
Q ss_pred ccEEEcCCCC-----------CchH-----------------------HHHHHHHHHHhhcC-CCCcEEEEcCCHHHHHH
Q 010422 225 VEILYTLYPE-----------PDYL-----------------------DATLITIFQVHLDE-APGDILVFLTGQEEIES 269 (511)
Q Consensus 225 ~~~~~~~~~~-----------~~~~-----------------------~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~ 269 (511)
.......... ..+. ......+....... .+.+++||+.+.++++.
T Consensus 219 ~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~ 298 (442)
T COG1061 219 YKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYE 298 (442)
T ss_pred eEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHH
Confidence 2221111100 0000 00111111122211 36789999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCC
Q 010422 270 VERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPV 349 (511)
Q Consensus 270 l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~ 349 (511)
++..+... +. +..+.+..+.++|.++++.|+.|.+++||++.++..|+|+|+++++|-
T Consensus 299 i~~~~~~~---------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~------------ 356 (442)
T COG1061 299 IAKLFLAP---------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII------------ 356 (442)
T ss_pred HHHHhcCC---------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE------------
Confidence 99988653 33 778899999999999999999999999999999999999999999995
Q ss_pred CCcccceeeecCHHHHHHhccccCCCC
Q 010422 350 KGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 350 ~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
.....|+..|.||+||.=|..
T Consensus 357 ------~~~t~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 357 ------LRPTGSRRLFIQRLGRGLRPA 377 (442)
T ss_pred ------eCCCCcHHHHHHHhhhhccCC
Confidence 223678899999999999944
No 99
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=2.1e-22 Score=207.10 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=78.9
Q ss_pred EEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHh
Q 010422 289 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQR 368 (511)
Q Consensus 289 ~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr 368 (511)
++..||+||+..+|..++-.||.|...|++||.+++.|||+|+.++|.- -|. ...++-.|.||
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------gDs---------LQL~plny~Qm 1026 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------GDS---------LQLDPLNYKQM 1026 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------ccc---------cccCchhHHhh
Confidence 4777899999999999999999999999999999999999999888885 221 35677889999
Q ss_pred ccccCCCC---CCeEEEec-ChhhHhhccCCCCCcccc
Q 010422 369 SGRAGREG---PGKCFRLY-PENEFDKLEDSTKPEIKR 402 (511)
Q Consensus 369 ~GRaGR~~---~G~~~~l~-~~~~~~~~~~~~~pei~~ 402 (511)
+|||||.| .|.+..+- +......+.-...|+|.-
T Consensus 1027 aGRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG 1064 (1330)
T KOG0949|consen 1027 AGRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQG 1064 (1330)
T ss_pred hccccccccccccceEEEeCcHHHHHHHHHHhhhcccC
Confidence 99999999 67776664 555555555555666543
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.87 E-value=6.5e-21 Score=210.87 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=85.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe-EEEEeccccccCCCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIPG 331 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gvdip~ 331 (511)
.++++||||.++++++.+++.|.+.+...........+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3589999999999999999999876543222222335566888875 46779999999876 89999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCC
Q 010422 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (511)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~ 377 (511)
+.+||. ++ .+.|...|+||+||+.|..+
T Consensus 775 v~~vVf--------~r----------pvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 775 ICNLVF--------LR----------RVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ccEEEE--------ec----------CCCCHHHHHHHHhhhccCCc
Confidence 999996 44 46788999999999999875
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=1.3e-19 Score=196.46 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=99.0
Q ss_pred HHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC--CeEEEEecc
Q 010422 244 TIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG--FRKVILATN 321 (511)
Q Consensus 244 ~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g--~~~vlvaT~ 321 (511)
.+..+.....+.++||||++++.+..+++.|.+. .++.+..+||+|+..+|.++.+.|+++ ..+|+|||+
T Consensus 483 ~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 483 WLIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred HHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 3444555555789999999999999999999543 178899999999999999999999874 689999999
Q ss_pred ccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCe--EEEecC
Q 010422 322 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK--CFRLYP 385 (511)
Q Consensus 322 ~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~--~~~l~~ 385 (511)
++++|+|++.+++||+ || .|.++..|.||+||+||.| .|. +|.++.
T Consensus 555 vgseGlNlq~a~~VIn--------fD----------lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 555 IGSEGRNFQFASHLVL--------FD----------LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred hhccCCCcccccEEEE--------ec----------CCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 9999999999999999 88 6999999999999999999 443 344443
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.85 E-value=1.5e-20 Score=202.66 Aligned_cols=299 Identities=18% Similarity=0.157 Sum_probs=179.4
Q ss_pred CCHHHHHHHHHHHhc---CC-EEEEEcCCCCchhchHHHHHhhcccc--CCCeEEEEeCccHHHHHHHHHHHHHHhCCcc
Q 010422 14 PIASVEKRLVEEVRK---ND-ILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~---~~-~~~i~apTGsGKTt~~~~~l~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 87 (511)
+.++.|.++...+.+ .. .+++.||||+|||++...+.+..... ....+++.+.|.+.++.++.+++....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 346778777777653 34 78899999999996655554433322 2456899999999999999998776543221
Q ss_pred --CC-eeeEEEeecccCC----------------------hhhhHHHHh--hCc-CC-----CCCCchhHhhhhhhhhhh
Q 010422 88 --GQ-RVGYSIRFDDRTS----------------------TSTRIKEAL--LDP-YL-----SRYSAIIVDEAHERTVHT 134 (511)
Q Consensus 88 --~~-~vg~~~~~~~~~~----------------------~~~~i~~~l--~~~-~l-----~~~~~iIiDE~H~r~~~~ 134 (511)
+. ..|.......... ..+....+. ... .. -..+.+|+||+|....++
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 11 0110000000000 000000000 000 00 123789999999877764
Q ss_pred --HHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhh
Q 010422 135 --DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEY 209 (511)
Q Consensus 135 --~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~ 209 (511)
..+++++..+.. .+.++|+||||++.. .+.+.
T Consensus 355 ~~~~l~~~i~~l~~-------------------------------------------~g~~ill~SATlP~~~~~~l~~~ 391 (733)
T COG1203 355 MLAALLALLEALAE-------------------------------------------AGVPVLLMSATLPPFLKEKLKKA 391 (733)
T ss_pred hHHHHHHHHHHHHh-------------------------------------------CCCCEEEEecCCCHHHHHHHHHH
Confidence 222222222211 578999999999553 34455
Q ss_pred hCCCCeEEeCCccccccEEE-cCCC-CCchHHHH--HHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCC
Q 010422 210 FGCAKAVHVQGRQFPVEILY-TLYP-EPDYLDAT--LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS 285 (511)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~ 285 (511)
++....+.......+....+ .... ..+..+.. ............+++++|-|||.+.|.++++.|++.
T Consensus 392 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~-------- 463 (733)
T COG1203 392 LGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK-------- 463 (733)
T ss_pred HhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc--------
Confidence 54332222221110000000 0000 00111110 001111122234789999999999999999999885
Q ss_pred CCeEEEEccCCCCHHHHHhhcCcC----CCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecC
Q 010422 286 RKLVTVPIFSSLPSEQQMRVFAPA----AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (511)
Q Consensus 286 ~~~~v~~lh~~l~~~~r~~i~~~f----~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s 361 (511)
...+..+||.+...+|.+.++.+ +.+...|+|||++.|.|+|+ +.+++|- .+.+
T Consensus 464 -~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mIT--------------------e~aP 521 (733)
T COG1203 464 -GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLIT--------------------ELAP 521 (733)
T ss_pred -CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeee--------------------cCCC
Confidence 33699999999999998877643 45678999999999999999 4777773 4788
Q ss_pred HHHHHHhccccCCCC---CCeEEEecC
Q 010422 362 KAQALQRSGRAGREG---PGKCFRLYP 385 (511)
Q Consensus 362 ~~~~~Qr~GRaGR~~---~G~~~~l~~ 385 (511)
..+.+||+||++|.| +|..|....
T Consensus 522 idSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 522 IDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred HHHHHHHHHHHhhcccccCCceeEeec
Confidence 999999999999999 566655543
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=9.8e-20 Score=191.30 Aligned_cols=162 Identities=23% Similarity=0.285 Sum_probs=121.3
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCC----CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
++.+||.|. ..++|.+.++ -+++.+|... |....-.+. .......+....+...+ ..+.++||||+|.+.
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~-l~vv~IPtnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~--~~g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYN-MEVITIPTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERH--AKGQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhC-CCEEEcCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHH
Confidence 678899998 3445655554 4456665432 221111111 11122233333333333 347899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCC---CCeE-----EEEeC
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTI---PGIK-----YVIDP 338 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdi---p~v~-----~VI~~ 338 (511)
++.++..|.+. ++....+|+++...++..+.++++.|. |+||||+|+||.|| ++|. +||+
T Consensus 453 se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~- 520 (796)
T PRK12906 453 SERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIG- 520 (796)
T ss_pred HHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEe-
Confidence 99999999986 888899999999888888888888777 99999999999999 5899 9998
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
|+ .|.|...+.|+.|||||.| +|.+..+++.+
T Consensus 521 -------te----------~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 521 -------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred -------ee----------cCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 65 6899999999999999999 99998888765
No 104
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.80 E-value=1.2e-17 Score=176.53 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEE
Q 010422 237 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKV 316 (511)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~v 316 (511)
.++..+..+.... ..+.++||||+|++.++.+++.|.+. ++.+..+||+++..+|.++++.|++|...|
T Consensus 427 qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~V 495 (655)
T TIGR00631 427 QVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDV 495 (655)
T ss_pred hHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceE
Confidence 3444444444432 33678999999999999999999887 788999999999999999999999999999
Q ss_pred EEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChh
Q 010422 317 ILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 387 (511)
Q Consensus 317 lvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 387 (511)
+|||+.+++|+|+|++++||. +|... ...|.+..+|+||+|||||...|+++.+++..
T Consensus 496 LV~t~~L~rGfDiP~v~lVvi--------~Dadi-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 496 LVGINLLREGLDLPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred EEEcChhcCCeeeCCCcEEEE--------eCccc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999999999999999999998 55322 11477889999999999999999999998653
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=8.5e-18 Score=175.97 Aligned_cols=309 Identities=19% Similarity=0.183 Sum_probs=197.4
Q ss_pred CCCHHHHHHHHHHHhcC----CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 010422 13 LPIASVEKRLVEEVRKN----DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~----~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (511)
..+.+-|+.+...+... +..++.|.||||||-....++.+.... |+.++++.|.-.+..|+.+++...++..++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 45667888888888665 678999999999997766666554433 678999999999999999999888875433
Q ss_pred CeeeEEEeecccCChhhhHHHHhhC----------------cCCCCCCchhHhhhhhhhhhhHHH-HHHHHHHHHhhccc
Q 010422 89 QRVGYSIRFDDRTSTSTRIKEALLD----------------PYLSRYSAIIVDEAHERTVHTDVL-LGLLKKVQNARSKS 151 (511)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~i~~~l~~----------------~~l~~~~~iIiDE~H~r~~~~~~l-l~~l~~~~~~~~~~ 151 (511)
. .++..+...+...|..- .-+.++++||+||-|+.+...+.- ..-.+++...|.+.
T Consensus 275 v-------lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 275 V-------LHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred h-------hcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 2 24555665655544321 127899999999999765443331 22233333333211
Q ss_pred cCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCC-CCeEEeCCccc---cccE
Q 010422 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGC-AKAVHVQGRQF---PVEI 227 (511)
Q Consensus 152 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~-~~~~~~~~~~~---~~~~ 227 (511)
.++.+|+-|||...+.+.+...+ ...+....+.. +.++
T Consensus 348 --------------------------------------~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v 389 (730)
T COG1198 348 --------------------------------------ENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRV 389 (730)
T ss_pred --------------------------------------hCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcc
Confidence 67899999999988887766433 23334433332 2222
Q ss_pred EEcCCC--CCc----hHHHHHHHHHHHhhcCCCCcEEEEcCCHH------------------------------------
Q 010422 228 LYTLYP--EPD----YLDATLITIFQVHLDEAPGDILVFLTGQE------------------------------------ 265 (511)
Q Consensus 228 ~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~LVF~~s~~------------------------------------ 265 (511)
...... ... +-...+..+.... +.+.++|+|+|.|.
T Consensus 390 ~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~ 467 (730)
T COG1198 390 EIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHY 467 (730)
T ss_pred eEEeccccccccCccCCHHHHHHHHHHH--hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCC
Confidence 222211 111 1122222222222 22566777777663
Q ss_pred ------------------------HHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH--HHhhcCcCCCCCeEEEEe
Q 010422 266 ------------------------EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ--QMRVFAPAAAGFRKVILA 319 (511)
Q Consensus 266 ------------------------~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~--r~~i~~~f~~g~~~vlva 319 (511)
.++++++.|.+.+. +..+..+.++..... -+..+..|.+|+..|||.
T Consensus 468 Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP-------~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiG 540 (730)
T COG1198 468 CGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFP-------GARIIRIDSDTTRRKGALEDLLDQFANGEADILIG 540 (730)
T ss_pred CCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC-------CCcEEEEccccccchhhHHHHHHHHhCCCCCeeec
Confidence 34555555555443 666777777665543 457788999999999999
Q ss_pred ccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEe
Q 010422 320 TNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (511)
Q Consensus 320 T~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (511)
|++++.|.|+|+++.|.-.+ -|...+..++....-+..-+.|-+|||||.+ +|.++.=
T Consensus 541 TQmiaKG~~fp~vtLVgvl~------aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQ 599 (730)
T COG1198 541 TQMIAKGHDFPNVTLVGVLD------ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQ 599 (730)
T ss_pred chhhhcCCCcccceEEEEEe------chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEE
Confidence 99999999999999875311 3333333333334455667999999999996 7876543
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=4.1e-17 Score=172.55 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=116.7
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcC---CCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTL---YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 267 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~ 267 (511)
++-+||.|. ..++|.+.++ -+++.+|....-....+.. ........+.+..+...+. .+.|+||||+|.+.+
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~--~g~PVLVgt~Sie~s 457 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYN-LEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV--RKQPVLVGTVSIEAS 457 (896)
T ss_pred hhccCCCCChhHHHHHHHHhC-CCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHH
Confidence 678899998 4445666554 4455655432111111110 1122334445555555554 488999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCe---EE-EEeCCcc--
Q 010422 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI---KY-VIDPGFV-- 341 (511)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v---~~-VI~~g~~-- 341 (511)
+.+++.|.+. ++....+|+.+.+.++..+.++|++|. |+||||+|+||+||-== .. +.+.-..
T Consensus 458 E~ls~~L~~~---------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~ 526 (896)
T PRK13104 458 EFLSQLLKKE---------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADAS 526 (896)
T ss_pred HHHHHHHHHc---------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchh
Confidence 9999999987 899999999999999999999999994 99999999999999410 00 0000000
Q ss_pred -------------cceeecCCCCcccc-eeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 342 -------------KARLYDPVKGMESL-LVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 342 -------------~~~~yd~~~~~~~~-~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
....--...|.... +..+.|.--=.|-.|||||.| +|.+-.+++-+
T Consensus 527 ~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSle 587 (896)
T PRK13104 527 EQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 587 (896)
T ss_pred hHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcC
Confidence 00000001222221 124667777889999999999 89877766543
No 107
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=1e-17 Score=163.90 Aligned_cols=277 Identities=23% Similarity=0.238 Sum_probs=169.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 107 (511)
+.++++-+|||.||||+-+.+-+... +..++.-|.|.++.++..++. ..+..+...+|-..++..........
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a------ksGvycGPLrLLA~EV~~r~n-a~gipCdL~TGeE~~~~~~~~~~a~h 262 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA------KSGVYCGPLRLLAHEVYDRLN-ALGIPCDLLTGEERRFVLDNGNPAQH 262 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh------ccceecchHHHHHHHHHHHhh-hcCCCccccccceeeecCCCCCcccc
Confidence 44678889999999998876555443 346788999999999999864 44555555555333322111000000
Q ss_pred H----HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCcccccc
Q 010422 108 K----EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQ 183 (511)
Q Consensus 108 ~----~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~ 183 (511)
. ++. ..-..+++.||||++ +|-|..||+.|...+--
T Consensus 263 vScTVEM~--sv~~~yeVAViDEIQ--------------------------------------mm~Dp~RGwAWTrALLG 302 (700)
T KOG0953|consen 263 VSCTVEMV--SVNTPYEVAVIDEIQ--------------------------------------MMRDPSRGWAWTRALLG 302 (700)
T ss_pred eEEEEEEe--ecCCceEEEEehhHH--------------------------------------hhcCcccchHHHHHHHh
Confidence 0 111 112347899999997 34444444444333222
Q ss_pred ccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcC
Q 010422 184 CQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLT 262 (511)
Q Consensus 184 ~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~ 262 (511)
+.. ..+.+.+=-|.+ =.+.+.+--|+.-.+..-.+..|+. +++ .++.-..+-..|+++|- -
T Consensus 303 l~A---dEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~-----------v~~---~~~~sl~nlk~GDCvV~-F 364 (700)
T KOG0953|consen 303 LAA---DEIHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLV-----------VEE---TALGSLSNLKPGDCVVA-F 364 (700)
T ss_pred hhh---hhhhccCCchHHHHHHHHHhhcCCeeEEEeecccCcce-----------ehh---hhhhhhccCCCCCeEEE-e
Confidence 211 223333322332 1223333333221221112222211 111 22233334457777664 4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC--CCeEEEEeccccccCCCCCCeEEEEeCCc
Q 010422 263 GQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA--GFRKVILATNIAETSVTIPGIKYVIDPGF 340 (511)
Q Consensus 263 s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~--g~~~vlvaT~~~~~Gvdip~v~~VI~~g~ 340 (511)
|++++-.+.+.+.+.. +..++.++|++|++.|.+--..|.+ +..+|+||||+.++|+|+ +|+-||-
T Consensus 365 Skk~I~~~k~kIE~~g--------~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF--- 432 (700)
T KOG0953|consen 365 SKKDIFTVKKKIEKAG--------NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIF--- 432 (700)
T ss_pred ehhhHHHHHHHHHHhc--------CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEE---
Confidence 7889999999998872 4448888999999998777677755 889999999999999999 6777773
Q ss_pred ccceeecCCCCcccceeeecCHHHHHHhccccCCCC----CCeEEEecChh
Q 010422 341 VKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG----PGKCFRLYPEN 387 (511)
Q Consensus 341 ~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~----~G~~~~l~~~~ 387 (511)
..-...+.-.+.+++.++..|-+|||||.| .|.+..+..++
T Consensus 433 ------~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 433 ------YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ------eecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 223333344557999999999999999998 58888887665
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=4.2e-17 Score=172.35 Aligned_cols=169 Identities=21% Similarity=0.233 Sum_probs=114.9
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCC----CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
++.+||.|. ..++|.+.++ -.++.+|... |....-.+. ...+...+....+...+ ..+.++||||+|.+.
T Consensus 367 kl~GmTGTa~te~~E~~~iY~-l~vv~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~ 442 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYN-LDVVVIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEK 442 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhC-CCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHH
Confidence 678899998 3445555554 4455665432 221111111 11223333334443333 347799999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCe--------------
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI-------------- 332 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v-------------- 332 (511)
++.+++.|.+. ++....+||. +.+|+..+..|+.+...|+||||+|+||+||+==
T Consensus 443 se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~ 511 (830)
T PRK12904 443 SELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEE 511 (830)
T ss_pred HHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhh
Confidence 99999999986 8889999996 7789999999999999999999999999999631
Q ss_pred ----------------EEEEeCCcccceeecCCCCcccce-eeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 333 ----------------KYVIDPGFVKARLYDPVKGMESLL-VVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 333 ----------------~~VI~~g~~~~~~yd~~~~~~~~~-~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
.-|.. ..|..... ..+.|.--=.|-.|||||.| +|.+-.+.+-+
T Consensus 512 ~~~~~~~~~~~~~~~~~~v~~-----------~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSle 573 (830)
T PRK12904 512 TEEQIAKIKAEWQEEHEEVLE-----------AGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 573 (830)
T ss_pred hhHHHHHHHHHHhhhhhhHHH-----------cCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcC
Confidence 11111 12222222 24677778899999999999 89887777544
No 109
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=9.6e-18 Score=148.86 Aligned_cols=271 Identities=16% Similarity=0.192 Sum_probs=169.9
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc-cCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
-.+...|.+.++...-|.+++-.|.+|-|||..+.+.-++... ..+...++++..+|+++-|+.+....+...-....+
T Consensus 63 ehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkv 142 (387)
T KOG0329|consen 63 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKV 142 (387)
T ss_pred CCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceE
Confidence 3578899999999999999999999999999766555555443 333456888899999999988776655543333343
Q ss_pred eEEEeecc--------------cCChhhhHHHHhhCc--CCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCC
Q 010422 92 GYSIRFDD--------------RTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (511)
Q Consensus 92 g~~~~~~~--------------~~~~~~~i~~~l~~~--~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~ 155 (511)
..-.++-. .+.++.++..+..+. .+.++.++|+|||+..-.+.|... ..
T Consensus 143 aVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrR----Dv----------- 207 (387)
T KOG0329|consen 143 SVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRR----DV----------- 207 (387)
T ss_pred EEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHH----HH-----------
Confidence 32222111 122344555555443 478899999999973222211111 11
Q ss_pred CCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHH-hhhCCCCeEEeCCc----cccccEE
Q 010422 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGR----QFPVEIL 228 (511)
Q Consensus 156 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~-~~~~~~~~~~~~~~----~~~~~~~ 228 (511)
.++++.. +..-|+..+|||+.. .-.. +|+.++-.+.+... .+....+
T Consensus 208 ----------------------QEifr~t----p~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 208 ----------------------QEIFRMT----PHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQY 261 (387)
T ss_pred ----------------------HHHhhcC----cccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHH
Confidence 1111111 256689999999933 3333 44443322222221 1333344
Q ss_pred EcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCc
Q 010422 229 YTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAP 308 (511)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 308 (511)
|....+... ...+..+++. ..-.+++||+.|.... .
T Consensus 262 YvkLke~eK-Nrkl~dLLd~---LeFNQVvIFvKsv~Rl-------------------~--------------------- 297 (387)
T KOG0329|consen 262 YVKLKENEK-NRKLNDLLDV---LEFNQVVIFVKSVQRL-------------------S--------------------- 297 (387)
T ss_pred HHhhhhhhh-hhhhhhhhhh---hhhcceeEeeehhhhh-------------------h---------------------
Confidence 433222111 1112222222 2245788888765430 0
Q ss_pred CCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 309 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 309 f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
| ..+ +|||+++.+|+||..++.|+| || .|.+..+|+||.|||||.| .|.++.+++.+
T Consensus 298 f---~kr-~vat~lfgrgmdiervNi~~N--------Yd----------mp~~~DtYlHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 298 F---QKR-LVATDLFGRGMDIERVNIVFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred h---hhh-hHHhhhhccccCcccceeeec--------cC----------CCCCchHHHHHhhhhhccccccceeehhcch
Confidence 1 123 899999999999999999999 88 7999999999999999999 89999999766
Q ss_pred hHh
Q 010422 388 EFD 390 (511)
Q Consensus 388 ~~~ 390 (511)
.-.
T Consensus 356 ~da 358 (387)
T KOG0329|consen 356 NDA 358 (387)
T ss_pred hhH
Confidence 443
No 110
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.72 E-value=1.8e-17 Score=157.40 Aligned_cols=110 Identities=18% Similarity=0.347 Sum_probs=99.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCC
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG 331 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~ 331 (511)
....+.+|||.|+.+|+.+.+.+.+.-+ ..+.+.++||+..+++|++-++.|+.+..+.+|||+++++|+||.+
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGG------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCC------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccC
Confidence 3467899999999999999999988633 3788999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecC
Q 010422 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (511)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (511)
+-++|| .+.|-.+.+|+||+||+||.. .|.++.|+.
T Consensus 577 ~p~~in------------------vtlpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 577 LPFMIN------------------VTLPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred CceEEE------------------EecCcccchhhhhhhccchhhhcceeEEEee
Confidence 999998 235888999999999999998 899999884
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.68 E-value=6.3e-16 Score=164.67 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEE
Q 010422 238 LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVI 317 (511)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vl 317 (511)
++..+..+.... ..+.+++|||+|++.++.+++.|.+. ++.+..+||+++..+|..+++.|++|...|+
T Consensus 432 ~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vl 500 (652)
T PRK05298 432 VDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVL 500 (652)
T ss_pred HHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEE
Confidence 444444444433 23678999999999999999999886 8899999999999999999999999999999
Q ss_pred EeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecCh
Q 010422 318 LATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (511)
Q Consensus 318 vaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 386 (511)
|||+++++|+|+|++++||. ||... ...|.+..+|+||+||+||...|.|+.+++.
T Consensus 501 V~t~~L~rGfdlp~v~lVii--------~d~ei-----fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 501 VGINLLREGLDIPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred EEeCHHhCCccccCCcEEEE--------eCCcc-----cccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99999999999999999998 55211 1146788999999999999889999999973
No 112
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1.6e-16 Score=155.66 Aligned_cols=170 Identities=20% Similarity=0.175 Sum_probs=123.1
Q ss_pred CCccEEEeccCC-C-HHHHHhhhCCC--CeEEeCCccccccEEEcCCCC---------CchHHHHHHHHHHHhhcCCCCc
Q 010422 190 APLKLIIMSASL-D-ARGFSEYFGCA--KAVHVQGRQFPVEILYTLYPE---------PDYLDATLITIFQVHLDEAPGD 256 (511)
Q Consensus 190 ~~~~~i~~SAT~-~-~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 256 (511)
.+.+++-.|||. + .....+.++-. ..+..+|.+..-.......|. .+++......+...... +-+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~--~~R 527 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH--GLR 527 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc--CCc
Confidence 678999999999 4 44556666543 355666665544433322221 12222222222333322 678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEE
Q 010422 257 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 336 (511)
Q Consensus 257 ~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI 336 (511)
++-||++|+-|+.+....++.+.+...+. --.+..|.||...++|++|+...-.|+.+-|||||++|.||||...+.|+
T Consensus 528 ~IAFC~~R~~CEL~~~~~R~I~~ET~~~L-V~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl 606 (1034)
T KOG4150|consen 528 CIAFCPSRKLCELVLCLTREILAETAPHL-VEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL 606 (1034)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHHhhHHH-HHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE
Confidence 99999999999998877776654433211 12456688999999999999988889999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeE
Q 010422 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (511)
Q Consensus 337 ~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~ 380 (511)
.+|+ |.|.+++.|.+|||||.. +..+
T Consensus 607 ~~GF------------------P~S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 607 HLGF------------------PGSIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred EccC------------------chhHHHHHHHhccccccCCCceE
Confidence 9995 999999999999999998 4433
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=6.9e-15 Score=155.41 Aligned_cols=180 Identities=21% Similarity=0.172 Sum_probs=116.1
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcC---CCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTL---YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 267 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~ 267 (511)
++-+||.|. ...+|.+.++ -.++.+|....-....+.. ........+.+..+...+. .+.++||||+|.+.+
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~-l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~--~GrpVLV~t~sv~~s 462 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYG-LDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRE--RGQPVLVGTVSIEQS 462 (908)
T ss_pred HhhcccCCChHHHHHHHHHhC-CCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHH--cCCCEEEEeCcHHHH
Confidence 578888888 3344555553 4455555432111111110 1123334455666666554 378899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCe---EEEEeCCccc--
Q 010422 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI---KYVIDPGFVK-- 342 (511)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v---~~VI~~g~~~-- 342 (511)
+.++..|.+. ++....+|+.+...++..+.++|+.|. |+||||+|+||.||-=- .+-+. -+..
T Consensus 463 e~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~-~~~~~~ 530 (908)
T PRK13107 463 ELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIE-ALENPT 530 (908)
T ss_pred HHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhh-hhcchh
Confidence 9999999987 888899999999999999999999998 99999999999999410 00000 0000
Q ss_pred ---c-----------eeecCCCCcccc-eeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 343 ---A-----------RLYDPVKGMESL-LVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 343 ---~-----------~~yd~~~~~~~~-~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
. ..--...|.... +..+.|.--=.|-.|||||.| +|.+-.+++-+
T Consensus 531 ~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlE 591 (908)
T PRK13107 531 AEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSME 591 (908)
T ss_pred hHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeC
Confidence 0 000000111111 124566677789999999999 99877777544
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.67 E-value=6.2e-15 Score=144.34 Aligned_cols=169 Identities=17% Similarity=0.139 Sum_probs=125.7
Q ss_pred CccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHH
Q 010422 191 PLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 270 (511)
Q Consensus 191 ~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l 270 (511)
..|+|..|||+...++..-=+. -+-++-....-++-.....|....++..+..+...... +.++||-+=|++.++.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~-vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~--~eRvLVTtLTKkmAEdL 462 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGN-VVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAK--NERVLVTTLTKKMAEDL 462 (663)
T ss_pred cCCEEEEECCCChHHHHhccCc-eeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHhc--CCeEEEEeehHHHHHHH
Confidence 4689999999955555432111 11111111111122222234455666666666554433 57899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCC
Q 010422 271 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 350 (511)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~ 350 (511)
.+.|.+. ++.+..+|+++..-+|.+++...+.|...|||.-|.+-.|+|+|.|..|-- .|...
T Consensus 463 T~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI--------lDADK 525 (663)
T COG0556 463 TEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--------LDADK 525 (663)
T ss_pred HHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE--------eecCc
Confidence 9999997 999999999999999999999999999999999999999999999998864 44321
Q ss_pred CcccceeeecCHHHHHHhccccCCCCCCeEEEec
Q 010422 351 GMESLLVVPISKAQALQRSGRAGREGPGKCFRLY 384 (511)
Q Consensus 351 ~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~ 384 (511)
..+.-|..+.+|-+|||+|.-+|+++...
T Consensus 526 -----eGFLRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 526 -----EGFLRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred -----cccccccchHHHHHHHHhhccCCeEEEEc
Confidence 11456778899999999999999998765
No 115
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.64 E-value=9.8e-16 Score=130.25 Aligned_cols=104 Identities=27% Similarity=0.506 Sum_probs=94.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCe
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v 332 (511)
+++++||||++.+.++.+++.|.+. ...+..+||+++..+|..+++.|.+|..+|+++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 4789999999999999999999873 6789999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEe
Q 010422 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (511)
Q Consensus 333 ~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (511)
++||. ++ .|.+..++.|++||+||.| .|.|+.+
T Consensus 98 ~~vi~--------~~----------~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 98 SVVIN--------YD----------LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CEEEE--------eC----------CCCCHHHheecccccccCCCCceEEeC
Confidence 99997 55 4788999999999999999 7887653
No 116
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.64 E-value=1.6e-14 Score=148.92 Aligned_cols=329 Identities=14% Similarity=0.129 Sum_probs=176.9
Q ss_pred CCCHHHHHHHHHH----HhcCC-EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCcc
Q 010422 13 LPIASVEKRLVEE----VRKND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (511)
Q Consensus 13 l~~~~~q~~~~~~----l~~~~-~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 87 (511)
..++.+|..++.. +.+|+ -++++..||+|||..+..++.........++++++.-+..++.|....+..+....-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 3457788776655 44554 488899999999966666655444444466899999999999888766555443211
Q ss_pred --CCeeeEEEee--cccCChhhhHHHHhhC-------cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCC
Q 010422 88 --GQRVGYSIRF--DDRTSTSTRIKEALLD-------PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHS 156 (511)
Q Consensus 88 --~~~vg~~~~~--~~~~~~~~~i~~~l~~-------~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~ 156 (511)
....++.... .-.+++...+...... .....+++|||||||.- ...+.-
T Consensus 244 ~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg-i~~~~~------------------- 303 (875)
T COG4096 244 KMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG-IYSEWS------------------- 303 (875)
T ss_pred ceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh-HHhhhH-------------------
Confidence 0111111010 1112222222222111 12345899999999942 211111
Q ss_pred CCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHH--hhhCCCCeEEeC------------Cc
Q 010422 157 NGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFS--EYFGCAKAVHVQ------------GR 221 (511)
Q Consensus 157 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~--~~~~~~~~~~~~------------~~ 221 (511)
.++|. .+...++++||+ +..+.. .||++.|+..+. -+
T Consensus 304 ----------~I~dY------------------FdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~ 355 (875)
T COG4096 304 ----------SILDY------------------FDAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYK 355 (875)
T ss_pred ----------HHHHH------------------HHHHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCC
Confidence 11111 222345558888 333322 456333322211 00
Q ss_pred cccccEEE-------cC-----------C--CC--------------CchHHHHHHHHHHHhhc--C--CCCcEEEEcCC
Q 010422 222 QFPVEILY-------TL-----------Y--PE--------------PDYLDATLITIFQVHLD--E--APGDILVFLTG 263 (511)
Q Consensus 222 ~~~~~~~~-------~~-----------~--~~--------------~~~~~~~~~~~~~~~~~--~--~~~~~LVF~~s 263 (511)
...+.... .. . .. ....+.....+...... . .-+++||||.+
T Consensus 356 vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n 435 (875)
T COG4096 356 VIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKN 435 (875)
T ss_pred ceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeC
Confidence 00000000 00 0 00 01112222333333332 1 15789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcC-CCCCeEEEEeccccccCCCCCCeEEEEeCCccc
Q 010422 264 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA-AAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 342 (511)
Q Consensus 264 ~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f-~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~ 342 (511)
..+++.+...+.+...+. .+-.+..+.|.-... +..|-+-+ ++.-.+|.++.+++.+|||+|.|..+|
T Consensus 436 ~dHAe~i~~~~~~~ype~----~~~~a~~IT~d~~~~-q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV------ 504 (875)
T COG4096 436 HDHAERIREALVNEYPEY----NGRYAMKITGDAEQA-QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV------ 504 (875)
T ss_pred cHHHHHHHHHHHHhCccc----cCceEEEEeccchhh-HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee------
Confidence 999999999998875442 233455555554333 22332222 344568999999999999999999888
Q ss_pred ceeecCCCCcccceeeecCHHHHHHhccccCCCCC--C------eEEEec---ChhhHhhccCCCCCcccccCccHHHHH
Q 010422 343 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP--G------KCFRLY---PENEFDKLEDSTKPEIKRCNLSNVILQ 411 (511)
Q Consensus 343 ~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~--G------~~~~l~---~~~~~~~~~~~~~pei~~~~l~~~~L~ 411 (511)
|+. .-.|+.-|.||+||+=|..+ | ..|.++ .--+|-.+.+...+...+..+..-++.
T Consensus 505 ---F~r---------~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~ 572 (875)
T COG4096 505 ---FDR---------KVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFA 572 (875)
T ss_pred ---ehh---------hhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhh
Confidence 441 24678889999999999872 3 233333 333344455555554444555444433
Q ss_pred H
Q 010422 412 L 412 (511)
Q Consensus 412 ~ 412 (511)
.
T Consensus 573 ~ 573 (875)
T COG4096 573 D 573 (875)
T ss_pred h
Confidence 3
No 117
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=6e-16 Score=118.75 Aligned_cols=72 Identities=29% Similarity=0.473 Sum_probs=68.8
Q ss_pred CeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHH
Q 010422 287 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (511)
Q Consensus 287 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~ 366 (511)
++.+..+||++++++|..+++.|.++..+|||||+++++|+|+|++++||. |+ .|.+..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~----------~~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YD----------PPWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SS----------SESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cc----------cCCCHHHHH
Confidence 888999999999999999999999999999999999999999999999999 66 489999999
Q ss_pred HhccccCCCC
Q 010422 367 QRSGRAGREG 376 (511)
Q Consensus 367 Qr~GRaGR~~ 376 (511)
|++||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999986
No 118
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.59 E-value=1.2e-14 Score=129.40 Aligned_cols=117 Identities=20% Similarity=0.179 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEE
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI 95 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~ 95 (511)
+++|.+++..+.+|+++++.||||||||+.+..+++......+...++++.|++.++.+..+++....... +..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNT-NVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccc-cccccccc
Confidence 47899999999999999999999999998888888776655434578999999999999999988777642 12222111
Q ss_pred eecc---------------cCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhh
Q 010422 96 RFDD---------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVH 133 (511)
Q Consensus 96 ~~~~---------------~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~ 133 (511)
.... ...+...+...+.. ..+.+++++|+||+|....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE 134 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc
Confidence 1000 00111222233332 23456999999999976664
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.59 E-value=9.1e-14 Score=145.66 Aligned_cols=287 Identities=18% Similarity=0.212 Sum_probs=171.7
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (511)
....++++..|+--...+.+|+.+.++||||.||||+...+.+-.+. .+++++++.||..++.|+.+++.++....-+
T Consensus 77 k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~--kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 77 KATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK--KGKRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred HhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh--cCCeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 34566899999988888999999999999999999876555443322 3578899999999999999998776532211
Q ss_pred CeeeEEEeecccCChhhh------HH-----------HHhhC--cCCC--CCCchhHhhhhh---hhhhhHHHHHHHH--
Q 010422 89 QRVGYSIRFDDRTSTSTR------IK-----------EALLD--PYLS--RYSAIIVDEAHE---RTVHTDVLLGLLK-- 142 (511)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~------i~-----------~~l~~--~~l~--~~~~iIiDE~H~---r~~~~~~ll~~l~-- 142 (511)
..+-+. +++..+...+ +. ..+.. ..+. +++++++|.++. .+-+.|.++.++-
T Consensus 155 ~~~~~~--yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~ 232 (1187)
T COG1110 155 LDVLVV--YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFS 232 (1187)
T ss_pred cceeee--eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCC
Confidence 111111 3444433322 11 11110 1133 589999999873 2233344433321
Q ss_pred --------HHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccc----cccCCCCccEEEeccCCCHH-----H
Q 010422 143 --------KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQC----QGRKFAPLKLIIMSASLDAR-----G 205 (511)
Q Consensus 143 --------~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~i~~SAT~~~~-----~ 205 (511)
.+...+.+.+ . ......+.+.+... .......-++|.+|||..+. .
T Consensus 233 eE~i~~a~~~~~lr~~~~-----~------------~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~L 295 (1187)
T COG1110 233 EEVIESAYELIKLRRKLY-----G------------EKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKL 295 (1187)
T ss_pred HHHHHHHHHHHHHHHHhh-----h------------hhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHH
Confidence 1111221110 0 00000001111110 00112556899999999432 2
Q ss_pred HHhhhCCCCeEEeCCcc---ccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCC---HHHHHHHHHHHHHHHh
Q 010422 206 FSEYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTG---QEEIESVERLVQERLL 279 (511)
Q Consensus 206 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s---~~~~~~l~~~l~~~~~ 279 (511)
|.+.+|= .+.+.. +.+.-.|... .-.+..... .... +...|||++. ++.++++++.|++.
T Consensus 296 fReLlgF----evG~~~~~LRNIvD~y~~~---~~~e~~~el----vk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~-- 361 (1187)
T COG1110 296 FRELLGF----EVGSGGEGLRNIVDIYVES---ESLEKVVEL----VKKL-GDGGLIFVPIDYGREKAEELAEYLRSH-- 361 (1187)
T ss_pred HHHHhCC----ccCccchhhhheeeeeccC---ccHHHHHHH----HHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc--
Confidence 4455441 122111 1111222222 223333332 2222 5679999999 88999999999887
Q ss_pred cCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecc----ccccCCCCCC-eEEEEeCCccc
Q 010422 280 QLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN----IAETSVTIPG-IKYVIDPGFVK 342 (511)
Q Consensus 280 ~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~----~~~~Gvdip~-v~~VI~~g~~~ 342 (511)
++.+..+|++ .++.++.|..|+++|+|... ++-+|+|+|. ++|+|-.|..+
T Consensus 362 -------Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 362 -------GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred -------CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 8999999973 36789999999999999875 8999999996 67899877764
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.58 E-value=8.7e-14 Score=148.94 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=72.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH---------------------HHHhhcCcCCC-
Q 010422 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE---------------------QQMRVFAPAAA- 311 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~---------------------~r~~i~~~f~~- 311 (511)
+++.+|||.++..|..+++.|.+...... +.....++++.+.+ ....+.+.|++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKF----EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhccccc----CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 58999999999999999998877643210 12333444433221 12356777865
Q ss_pred CCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCC
Q 010422 312 GFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (511)
Q Consensus 312 g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~ 375 (511)
+..+|+|.++.+-+|+|.|.+.+++ .| .|..-..++|.+||+-|.
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLy---------ld----------Kplk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLY---------LD----------KPLKYHGLLQAIARTNRI 634 (667)
T ss_pred CCceEEEEEcccccccCCCccceEE---------Ee----------ccccccHHHHHHHHhccc
Confidence 6789999999999999999999887 44 355555689999999994
No 121
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2e-14 Score=152.56 Aligned_cols=164 Identities=20% Similarity=0.266 Sum_probs=117.4
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCC----CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
++-+||.|. ...+|.+.++ -.++.+|... |+...-.+. ...+...+.+..+...+ ..+.++||||+|++.
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~-L~Vv~IPTnr-P~~R~D~~d~vy~t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYK-LDVVVIPTNK-PIVRKDMDDLVYKTRREKYNAIVLKVEELQ--KKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhC-CcEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHH
Confidence 577888888 3445555443 3455555432 211111111 11122333333333333 347899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCC---CeEE-----EEeC
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIKY-----VIDP 338 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip---~v~~-----VI~~ 338 (511)
++.+++.|.+. ++....+|+ .+.+|+..+..|+.+...|+||||+|+||+||+ +|.. ||.
T Consensus 611 sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg- 678 (1025)
T PRK12900 611 SETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG- 678 (1025)
T ss_pred HHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC-
Confidence 99999999887 888888997 577899999999999999999999999999999 4433 354
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhH
Q 010422 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 389 (511)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 389 (511)
++ .|.|...|.||+|||||.| +|.+..+++.++.
T Consensus 679 -------te----------rhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 679 -------SE----------RHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred -------CC----------CCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 33 5788889999999999999 9999999987654
No 122
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=2.4e-13 Score=144.40 Aligned_cols=323 Identities=19% Similarity=0.158 Sum_probs=207.4
Q ss_pred HHHHHHHHHHH-hcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEE
Q 010422 16 ASVEKRLVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYS 94 (511)
Q Consensus 16 ~~~q~~~~~~l-~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~ 94 (511)
.++|.++...+ +.++++++.+|+|||||.++..+++.. ....+++++.|..+.+..+...+.+.++...|..+--.
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~---~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l 1221 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP---DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKL 1221 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC---ccceEEEEecchHHHHHHHHHHHHHhhccccCceEEec
Confidence 34566666554 467899999999999999998888872 23457888899998888877776665554444332211
Q ss_pred EeecccC------------ChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 010422 95 IRFDDRT------------STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNN 162 (511)
Q Consensus 95 ~~~~~~~------------~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g 162 (511)
..+... ++..+. .++ ...+++++.|.||.|.. ++..|
T Consensus 1222 -~ge~s~~lkl~~~~~vii~tpe~~-d~l--q~iQ~v~l~i~d~lh~i---------------------------gg~~g 1270 (1674)
T KOG0951|consen 1222 -TGETSLDLKLLQKGQVIISTPEQW-DLL--QSIQQVDLFIVDELHLI---------------------------GGVYG 1270 (1674)
T ss_pred -CCccccchHHhhhcceEEechhHH-HHH--hhhhhcceEeeehhhhh---------------------------cccCC
Confidence 111111 111111 122 26778999999999931 24444
Q ss_pred CCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEe--CCccccccEEEcCCCCCchHH
Q 010422 163 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHV--QGRQFPVEILYTLYPEPDYLD 239 (511)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 239 (511)
+.++.+.+ ++.+.....+++|++.+|..+ |+.++ -.+....++.+ ..++.|.+++........+..
T Consensus 1271 ~v~evi~S----------~r~ia~q~~k~ir~v~ls~~lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~ 1339 (1674)
T KOG0951|consen 1271 AVYEVICS----------MRYIASQLEKKIRVVALSSSLANARDL-IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFES 1339 (1674)
T ss_pred ceEEEEee----------HHHHHHHHHhheeEEEeehhhccchhh-ccccccceeecCcccCCCceeEEEEEeccchhHH
Confidence 44444333 112222222788999999998 88888 22222334443 356666666665555444433
Q ss_pred HHHH-------HHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHh------------c---CCCCCCCeEEEEccCCC
Q 010422 240 ATLI-------TIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL------------Q---LPEASRKLVTVPIFSSL 297 (511)
Q Consensus 240 ~~~~-------~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~------------~---~~~~~~~~~v~~lh~~l 297 (511)
..+. .+.+.. . .+++.+||+|+++++..++.-+..... . .-.+..+..|. |-++
T Consensus 1340 ~~~am~~~~~~ai~~~a-~-~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~ 1415 (1674)
T KOG0951|consen 1340 RMLAMTKPTYTAIVRHA-G-NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGL 1415 (1674)
T ss_pred HHHHhhhhHHHHHHHHh-c-CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--cccc
Confidence 3222 222222 2 478899999999999988766543211 0 00112233444 8999
Q ss_pred CHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCC
Q 010422 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (511)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~ 377 (511)
+..++..+-..|..|.+.|+|...- -+|+-...--+|+- .+..||...+.. .+.+.++..||.|+|.| .
T Consensus 1416 s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm----gt~~ydg~e~~~----~~y~i~~ll~m~G~a~~--~ 1484 (1674)
T KOG0951|consen 1416 SSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM----GTQYYDGKEHSY----EDYPIAELLQMVGLASG--A 1484 (1674)
T ss_pred CcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe----cceeeccccccc----ccCchhHHHHHhhhhcC--C
Confidence 9999999999999999999888877 88888876666664 678899777655 37889999999999988 6
Q ss_pred CeEEEecC---hhhHhhccCCCCC
Q 010422 378 GKCFRLYP---ENEFDKLEDSTKP 398 (511)
Q Consensus 378 G~~~~l~~---~~~~~~~~~~~~p 398 (511)
|+|+.+.. ++.|.++.....|
T Consensus 1485 ~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1485 GKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred ccEEEEecCchHHHHHHhccCcCc
Confidence 78888773 3344556555555
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.55 E-value=2.6e-13 Score=148.33 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=94.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC---CCeEEEEeccccccCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA---GFRKVILATNIAETSVTI 329 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~---g~~~vlvaT~~~~~Gvdi 329 (511)
.+.++|||+......+.+.+.|... ++....+||+++.++|..+++.|.+ +...+|++|.+.+.|+|+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 3678999999888888888887665 7888899999999999999999964 234679999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCC---eEEEecChhhH
Q 010422 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPG---KCFRLYPENEF 389 (511)
Q Consensus 330 p~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G---~~~~l~~~~~~ 389 (511)
...++||. || .|.++....|+.||+.|.|.- .+|+|+++...
T Consensus 557 t~Ad~VIi--------yD----------~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 557 ATADIVIL--------YD----------SDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred hhCCEEEE--------eC----------CCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999999 98 578889999999999999933 57888876544
No 124
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.51 E-value=3.3e-14 Score=114.41 Aligned_cols=67 Identities=46% Similarity=0.715 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCCh
Q 010422 436 KSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSP 503 (511)
Q Consensus 436 ~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~i~a~l~~~~~~~~~~ 503 (511)
+|++.|+.+|+||+++++|+ +|+.++.+|++|++|++|+++..++|.+++++|+|+|++.++|..|.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~-lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~ 67 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTP-LGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPD 67 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-H-HHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---C
T ss_pred CHHHHHHHCCCCCCCCCcCH-HHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCcc
Confidence 48899999999999999997 99999999999999999999999999999999999999999999975
No 125
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1.4e-12 Score=138.38 Aligned_cols=162 Identities=22% Similarity=0.229 Sum_probs=103.2
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcC---CCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTL---YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 267 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~ 267 (511)
++.+||.|. ..++|.+.++ -+++.+|.........+.. ........+.+..+...+.. +.|+||-+.|.+..
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~-l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~--grPvLigt~si~~s 581 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYN-LYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRK--GNPILIGTESVEVS 581 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhC--CCCEEEEeCcHHHH
Confidence 677888887 3344555554 3455555432111111111 11123445556666666544 67899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCC-eEEEEeccccccCCCCCCe--------EEEEeC
Q 010422 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKVILATNIAETSVTIPGI--------KYVIDP 338 (511)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~vlvaT~~~~~Gvdip~v--------~~VI~~ 338 (511)
+.++..|.+. ++....+++.-...|-..|-+ .|. -.|.||||+|+||.||-=- -+||-+
T Consensus 582 e~ls~~L~~~---------gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgT 649 (970)
T PRK12899 582 EKLSRILRQN---------RIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGT 649 (970)
T ss_pred HHHHHHHHHc---------CCcceecccchhhhHHHHHHh---cCCCCcEEEeeccccCCcccccCchHHhcCCcEEEee
Confidence 9999999876 666666666533333223322 344 5799999999999999321 134432
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
. .+.|..--.|-.|||||.| +|.+-.+++-+
T Consensus 650 e------------------r~es~Rid~Ql~GRagRQGdpGss~f~lSlE 681 (970)
T PRK12899 650 S------------------RHQSRRIDRQLRGRCARLGDPGAAKFFLSFE 681 (970)
T ss_pred c------------------cCchHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 2 4678888999999999999 99887777544
No 126
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.50 E-value=1.2e-13 Score=126.98 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=78.3
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC---CCeEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---DGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~---~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (511)
.-.++++|++++..+.+|+++++++|||+|||..+...++...... ++.+++++.|++.++.|..+.+...... .+
T Consensus 19 ~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~-~~ 97 (203)
T cd00268 19 FEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKH-TN 97 (203)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhcc-CC
Confidence 3348999999999999999999999999999976666655554433 4567889999999999998877665432 12
Q ss_pred CeeeEEEeecc--------------cCChhhhHHHHhhC--cCCCCCCchhHhhhhhh
Q 010422 89 QRVGYSIRFDD--------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 130 (511)
Q Consensus 89 ~~vg~~~~~~~--------------~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r 130 (511)
..+........ ...+...+...+.. ..+.+++++|+||+|..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 98 LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM 155 (203)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh
Confidence 22221111000 01122223333322 24678899999999964
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.50 E-value=2.1e-12 Score=142.73 Aligned_cols=184 Identities=19% Similarity=0.225 Sum_probs=110.3
Q ss_pred ccEEEeccCCC----HHHHHhhhCCCC--eEEeCCccccc---cEEEcC--CC------CCchHHHHHHHHHHHhhcCCC
Q 010422 192 LKLIIMSASLD----ARGFSEYFGCAK--AVHVQGRQFPV---EILYTL--YP------EPDYLDATLITIFQVHLDEAP 254 (511)
Q Consensus 192 ~~~i~~SAT~~----~~~l~~~~~~~~--~~~~~~~~~~~---~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~ 254 (511)
..+|++|||+. .+-+.+.+|-.. ...+...+++. ...+.. .+ ..+|.+.....+..+... .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 46899999993 345666676432 12221222221 112211 11 123445555556555444 36
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeE-
Q 010422 255 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIK- 333 (511)
Q Consensus 255 ~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~- 333 (511)
|++|||++|.+..+.++..|.+.... .++.+.. .+.. .+|.++++.|++|+..|+++|+.+.+|||+|+..
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 89999999999999999998753210 1333332 2332 4788899999999999999999999999999876
Q ss_pred -EEEeCCcccceeecC----------CCCccc--ceeeecCHHHHHHhccccCCCC--CCeEEEec
Q 010422 334 -YVIDPGFVKARLYDP----------VKGMES--LLVVPISKAQALQRSGRAGREG--PGKCFRLY 384 (511)
Q Consensus 334 -~VI~~g~~~~~~yd~----------~~~~~~--~~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~ 384 (511)
.||-.|+.=..--|| ..|... -...|.....+.|-+||.=|.. .|..+.+=
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 344444321100000 001010 0112445677999999999988 57665553
No 128
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.49 E-value=3.5e-12 Score=136.44 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=75.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcC--------------------------C
Q 010422 257 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA--------------------------A 310 (511)
Q Consensus 257 ~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f--------------------------~ 310 (511)
.||=+++.+.+-.+++.|.+... .....+.++.|||..+...|..+++.. .
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~---~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLA---EEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhcc---ccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 57778888889889888877532 233467788999999888877666432 1
Q ss_pred CCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCC
Q 010422 311 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (511)
Q Consensus 311 ~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~ 377 (511)
.+...|+|||++.|.|+|+ |.+++|- .+.+..+.+||+||..|.+.
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~-dfd~~~~--------------------~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDH-DYDWAIA--------------------DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred cCCCeEEEEeeeEEEEecc-cCCeeee--------------------ccCcHHHHHHHhhccccccc
Confidence 2467999999999999999 5566662 47889999999999999883
No 129
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.45 E-value=1.2e-13 Score=106.90 Aligned_cols=72 Identities=36% Similarity=0.606 Sum_probs=67.5
Q ss_pred CeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHH
Q 010422 287 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (511)
Q Consensus 287 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~ 366 (511)
++.+..+||+++.++|..+++.|.++..+|+++|++++.|+|+|++++||. ++ .|.+...|.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~----------~~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YD----------LPWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eC----------CCCCHHHHH
Confidence 788999999999999999999999999999999999999999999999998 55 478999999
Q ss_pred HhccccCCCC
Q 010422 367 QRSGRAGREG 376 (511)
Q Consensus 367 Qr~GRaGR~~ 376 (511)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999976
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=2.8e-11 Score=125.52 Aligned_cols=162 Identities=22% Similarity=0.234 Sum_probs=105.8
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCC----CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
++-+||.|. ..+.|.+.++ -+++.+|... |....-.+. .......+.+..+...+. .+.||||.+.|.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~-l~Vv~IPtnk-p~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~--~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYD-LGVSVIPPNK-PNIREDEADRVYATAAEKNDAIVEHIAEVHE--TGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhC-CcEEECCCCC-CceeecCCCceEeCHHHHHHHHHHHHHHHHH--cCCCEEEEeCCHHH
Confidence 678999998 4556766665 3455555432 221111111 112344455555555554 48899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCC-eEEEEeccccccCCCCC---------------
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKVILATNIAETSVTIP--------------- 330 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~vlvaT~~~~~Gvdip--------------- 330 (511)
.+.++..|.+. ++....+++.-...| ..|+.. .|+ -.|.||||+|+||.||-
T Consensus 440 SE~ls~~L~~~---------gI~h~vLNAk~~~~E-A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~ 507 (764)
T PRK12326 440 SEELAERLRAA---------GVPAVVLNAKNDAEE-ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAEL 507 (764)
T ss_pred HHHHHHHHHhC---------CCcceeeccCchHhH-HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHc
Confidence 99999999886 666677777643333 233322 243 47999999999999994
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 331 ~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
+=-+||-+. .+.|.--=.|-.|||||.| +|.+-.+.+-++
T Consensus 508 GGLhVIgTe------------------rheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 508 GGLHVIGTG------------------RHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CCcEEEecc------------------CCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 112444322 4677777899999999999 898777775443
No 131
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.37 E-value=1.8e-14 Score=147.94 Aligned_cols=418 Identities=8% Similarity=-0.190 Sum_probs=280.1
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC---CeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---GKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~---~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
.+...|.+++.+.+++++..+.+.++.+.|||||+++.++.+++...... -.-++..+|++..+........-+.+.
T Consensus 401 etgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctv 480 (1282)
T KOG0921|consen 401 ETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTV 480 (1282)
T ss_pred cccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeecc
Confidence 34567889999999999999999999999999999999999988765433 224566778887776666554444444
Q ss_pred ccCCeeeEEEeecccCChhh---------hHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCC
Q 010422 86 ELGQRVGYSIRFDDRTSTST---------RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHS 156 (511)
Q Consensus 86 ~~~~~vg~~~~~~~~~~~~~---------~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~ 156 (511)
.+....++............ .+...+. ..+....+.+.||.|+++.++|.++.+++.+
T Consensus 481 gvllr~~e~glrg~sh~i~deiherdv~~dfll~~l-r~m~~ty~dl~v~lmsatIdTd~f~~~f~~~------------ 547 (1282)
T KOG0921|consen 481 GVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVL-REMISTYRDLRVVLMSATIDTDLFTNFFSSI------------ 547 (1282)
T ss_pred chhhhhhhhcccccccccchhhhhhccchHHHHHHH-Hhhhccchhhhhhhhhcccchhhhhhhhccc------------
Confidence 44444443333222221111 1111111 1234567889999999999999998888643
Q ss_pred CCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccE---------
Q 010422 157 NGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEI--------- 227 (511)
Q Consensus 157 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~--------- 227 (511)
++++++++|.+...|-.++-..+...++++.++.+.
T Consensus 548 -----------------------------------p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~ 592 (1282)
T KOG0921|consen 548 -----------------------------------PDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDE 592 (1282)
T ss_pred -----------------------------------cceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCc
Confidence 456899999988877644433333333333222110
Q ss_pred -----------E----Ec------------CCCCCchHHHHHHHHHH------HhhcCCCCcEEEEcCCHHHHHHHHHHH
Q 010422 228 -----------L----YT------------LYPEPDYLDATLITIFQ------VHLDEAPGDILVFLTGQEEIESVERLV 274 (511)
Q Consensus 228 -----------~----~~------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~LVF~~s~~~~~~l~~~l 274 (511)
. |. ........++.+..+.. +..-.++...|+|++.+.-.......+
T Consensus 593 ~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~ 672 (1282)
T KOG0921|consen 593 EVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQA 672 (1282)
T ss_pred hhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccc
Confidence 0 00 01123444444433221 223356888999999998777776666
Q ss_pred HHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCccc
Q 010422 275 QERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMES 354 (511)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~ 354 (511)
... +-+. +....+...|..+...+.+.+.+....+.+.+...|...+..|...+..+|++++..+...+-.....+.
T Consensus 673 ~~y-~ilp--~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sk 749 (1282)
T KOG0921|consen 673 NKY-EILP--LHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASK 749 (1282)
T ss_pred hhc-cccc--chhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccc
Confidence 543 1111 1244566779999999999999999999999999999999999888999999999888777766666666
Q ss_pred ceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhhccCCCCCcccccCccHHHHHHHHcCCCCCCcc--cCCCCCCHH
Q 010422 355 LLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF--DFMEKPSRA 432 (511)
Q Consensus 355 ~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~~~~l~~~~L~~~~~~~~~~~~~--~~~~~p~~~ 432 (511)
....|.+...-.||.||++|...+.||.++.......|.....+|+........++.++.+-...+..+ +.+.+|+..
T Consensus 750 tn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~ 829 (1282)
T KOG0921|consen 750 TNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAV 829 (1282)
T ss_pred cchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHH
Confidence 666788888899999999999999999999999999999999999877665555555544433233323 334555444
Q ss_pred HHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHHHHHhh
Q 010422 433 SIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAG 478 (511)
Q Consensus 433 ~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~~~~~~ 478 (511)
....+-..+...-..+..--.+. +++-....++.|..+++...+.
T Consensus 830 l~~m~~ld~n~elt~lg~~la~l-~iep~~~k~~~lg~~~g~~~~m 874 (1282)
T KOG0921|consen 830 LREMGALDANDELTPLGRMLARL-PIEPRIGKMMILGTALGAGSVM 874 (1282)
T ss_pred HHHhhhhhccCcccchhhhhhhc-cCcccccceeeechhhccchhh
Confidence 44333333333333333334564 8999999999998887665553
No 132
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.36 E-value=1.7e-10 Score=125.91 Aligned_cols=179 Identities=13% Similarity=0.162 Sum_probs=104.4
Q ss_pred CccEEEeccCCC---HHHHHhhhCCC--CeEEeCCccccccEEEcC--CC------CCchHHHHHHHHHHHhhcCCCCcE
Q 010422 191 PLKLIIMSASLD---ARGFSEYFGCA--KAVHVQGRQFPVEILYTL--YP------EPDYLDATLITIFQVHLDEAPGDI 257 (511)
Q Consensus 191 ~~~~i~~SAT~~---~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~ 257 (511)
...+|++|||+. ...+.+.+|-. ....++.....-...+.. .+ ..+|.+.....+..+. ..+|++
T Consensus 573 ~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~--~~~g~~ 650 (820)
T PRK07246 573 TCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELK--QLQQPI 650 (820)
T ss_pred CCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHH--hcCCCE
Confidence 357899999992 22366666532 111121111111111211 11 1345556666665554 348999
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccC-CCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCC--eEE
Q 010422 258 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS-SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG--IKY 334 (511)
Q Consensus 258 LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~--v~~ 334 (511)
||+++|.+..+.++..|... ...+ ...| +.+ +.++.+.|+++...||++|+.+-.|||+|+ ...
T Consensus 651 LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~~---~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~ 717 (820)
T PRK07246 651 LVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNGT---AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMI 717 (820)
T ss_pred EEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCcc---HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEE
Confidence 99999999999999888542 2233 2233 222 456788898888899999999999999973 444
Q ss_pred EEeCCcccceeecC----------CCCcccc--eeeecCHHHHHHhccccCCCC--CCeEEEec
Q 010422 335 VIDPGFVKARLYDP----------VKGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRLY 384 (511)
Q Consensus 335 VI~~g~~~~~~yd~----------~~~~~~~--~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~ 384 (511)
||-.++.=..-.|| ..|-+.. ...|.-...+.|-+||.=|.. .|..+.+=
T Consensus 718 viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 718 EVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 44334321100111 0111111 123445677999999999988 68766554
No 133
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.35 E-value=1.7e-12 Score=102.78 Aligned_cols=66 Identities=48% Similarity=0.780 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHHHHHhhhc-CCHHHHHHHHHhhcCCCcccCC
Q 010422 436 KSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQF-NCLEEMLITVAMLSVESIFFRS 502 (511)
Q Consensus 436 ~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~-~~~~~~l~i~a~l~~~~~~~~~ 502 (511)
+|++.|+.+||||+++++|+ +|+.|+.+|++|++|++++.+..+ +|.+++++|+|+++..++|..+
T Consensus 1 ~A~~~L~~LgAld~~~~lT~-lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~ 67 (92)
T smart00847 1 AALELLYELGALDDDGRLTP-LGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP 67 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCH-HHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc
Confidence 37899999999999999997 999999999999999999999999 9999999999999999998776
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=1.3e-10 Score=123.50 Aligned_cols=167 Identities=22% Similarity=0.262 Sum_probs=101.8
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccc-----cEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPV-----EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQE 265 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~ 265 (511)
++-+||.|. ..+.|.+.++ -+++.+|...... +..|. .......+.+..+...+. .+.||||-+.|.+
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPTnkP~~R~D~~d~vy~--t~~eK~~Ai~~ei~~~~~--~GrPVLVGT~SVe 460 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYG-LDVVVIPPNKPLARKDFNDLVYL--TAEEKYAAIITDIKECMA--LGRPVLVGTATIE 460 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhC-CCEEECCCCCCcccccCCCeEEc--CHHHHHHHHHHHHHHHHh--CCCCEEEEeCCHH
Confidence 678899998 3445666554 4455555432111 11121 112334555555555554 3889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-CeEEEEeccccccCCCCC---CeE--------
Q 010422 266 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILATNIAETSVTIP---GIK-------- 333 (511)
Q Consensus 266 ~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~vlvaT~~~~~Gvdip---~v~-------- 333 (511)
..+.+++.|.+. ++..-.+++.-...|-. |+. ..| .-.|.||||+|+||.||- +..
T Consensus 461 ~SE~ls~~L~~~---------gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~ 528 (913)
T PRK13103 461 TSEHMSNLLKKE---------GIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALEN 528 (913)
T ss_pred HHHHHHHHHHHc---------CCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhh
Confidence 999999999886 55555555543333322 332 234 347999999999999993 000
Q ss_pred ------------------EEEeCCcccceeecCCCCcccc-eeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 334 ------------------YVIDPGFVKARLYDPVKGMESL-LVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 334 ------------------~VI~~g~~~~~~yd~~~~~~~~-~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
-|.. ..|.... +..+.|.--=.|-.|||||.| +|.+-.+++-+
T Consensus 529 ~~~~~~~~~~~~~~~~~e~V~e-----------~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlE 591 (913)
T PRK13103 529 PTPEQIAQIKADWQKRHQQVIE-----------AGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 591 (913)
T ss_pred hhHHHHHHHHHHHHhHHHHHHH-----------cCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcC
Confidence 0000 1111111 124677777889999999999 89877766543
No 135
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.27 E-value=2.2e-11 Score=118.44 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCC-CCCeEEEEe
Q 010422 241 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA-AGFRKVILA 319 (511)
Q Consensus 241 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~-~g~~~vlva 319 (511)
+...+++.|.. .+.++|||..+.-...+.|-.| .--.++|..++.+|.+|++.|. +..++-|+-
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl--------------~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL--------------GKPFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc--------------CCceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 34455566655 3778999987655444444333 2234589999999999999998 457899999
Q ss_pred ccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-------CCeEEEecChhhHh
Q 010422 320 TNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-------PGKCFRLYPENEFD 390 (511)
Q Consensus 320 T~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-------~G~~~~l~~~~~~~ 390 (511)
+-+...++|+|..++.|+ -... --|..+=.||.||.-|+. +...|.|++++..+
T Consensus 596 SKVgDtSiDLPEAnvLIQ--------ISSH---------~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQ--------ISSH---------GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred eeccCccccCCcccEEEE--------Eccc---------ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 999999999999999997 2111 235566789999988765 24567777665544
No 136
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.27 E-value=6.1e-11 Score=108.02 Aligned_cols=74 Identities=24% Similarity=0.185 Sum_probs=60.9
Q ss_pred ccCCCHHHHHHHHHHHhcC-CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 11 KSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~-~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
...+++++|.+++..+..+ +++++.||||||||+.+..++.+.........++++.|+..++.+..+++.....
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3456889999999999988 9999999999999987877777766554445788999999999888887766553
No 137
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.21 E-value=1.1e-11 Score=103.02 Aligned_cols=111 Identities=23% Similarity=0.242 Sum_probs=70.6
Q ss_pred hcCCEEEEEcCCCCchhc-hHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEee------cc
Q 010422 27 RKNDILIIVGETGSGKTT-QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF------DD 99 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt-~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~------~~ 99 (511)
.+|+..+|...+|||||+ .+|.++.+.... +.+++++.|+|.++..+.+.+.... +.+.... .+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~~-------~~~~t~~~~~~~~g~ 72 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGLP-------VRFHTNARMRTHFGS 72 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTSS-------EEEESTTSS----SS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcCC-------cccCceeeeccccCC
Confidence 468889999999999997 477777665443 5679999999999999888764321 1111110 00
Q ss_pred cC----ChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHH
Q 010422 100 RT----STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (511)
Q Consensus 100 ~~----~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~ 146 (511)
.. ...+-...++......++++||+||+|-.+..+-...++++....
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~ 123 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE 123 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhh
Confidence 00 111212234445568899999999999999999999998888754
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=1.7e-09 Score=114.05 Aligned_cols=161 Identities=22% Similarity=0.252 Sum_probs=102.4
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCC----CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
++-+||.|. ..++|.+.++ -.++.+|... |+...-.+. .......+.+..+...+. .+.|+||.|.|.+.
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~-l~Vv~IPTnk-P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~--~gqPVLVgT~SIe~ 438 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYN-MRVNVVPTNK-PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK--KGQPILIGTAQVED 438 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhC-CCEEECCCCC-CeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHH
Confidence 678999998 3344555553 4455555432 221111111 112333455555555553 47899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-CeEEEEeccccccCCCCCCeE--------EEEe
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILATNIAETSVTIPGIK--------YVID 337 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~vlvaT~~~~~Gvdip~v~--------~VI~ 337 (511)
.+.++..|.+. ++..-.+++.-...|- .|+. ..| .-.|.||||+|+||.||---. +||-
T Consensus 439 SE~ls~~L~~~---------gi~h~vLNAk~~e~EA-~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIg 506 (925)
T PRK12903 439 SETLHELLLEA---------NIPHTVLNAKQNAREA-EIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLG 506 (925)
T ss_pred HHHHHHHHHHC---------CCCceeecccchhhHH-HHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEe
Confidence 99999999886 6666666765332222 2332 345 358999999999999995222 5664
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
+. .+.|.--=.|-.|||||.| +|.+-.+.+-+
T Consensus 507 Te------------------rheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 507 TD------------------KAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred cc------------------cCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 22 3556666779999999999 89766665543
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.19 E-value=1.9e-09 Score=119.97 Aligned_cols=184 Identities=19% Similarity=0.224 Sum_probs=109.5
Q ss_pred ccEEEeccCCCH----HHHHhhhCCC----CeEEeCCccccc---cEEEcC--CC------CCchHHHHHHHHHHHhhcC
Q 010422 192 LKLIIMSASLDA----RGFSEYFGCA----KAVHVQGRQFPV---EILYTL--YP------EPDYLDATLITIFQVHLDE 252 (511)
Q Consensus 192 ~~~i~~SAT~~~----~~l~~~~~~~----~~~~~~~~~~~~---~~~~~~--~~------~~~~~~~~~~~~~~~~~~~ 252 (511)
..+|++|||+.. +-+.+.+|-. ....++.. ++. ...|.. .+ ...|.+.....+..+...
T Consensus 673 ~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~Sp-F~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~- 750 (928)
T PRK08074 673 KSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSP-FSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA- 750 (928)
T ss_pred CcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCC-CCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-
Confidence 468999999932 2344556532 12333332 222 111211 11 134555666666665443
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCe
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v 332 (511)
.+|++|||++|.+..+.+++.|.+... ..++.+.. . ++....|.++.+.|+++...||++|..+..|||+|+-
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~ 823 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGD 823 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCC
Confidence 378999999999999999999976421 01222222 2 4444567888899998888999999999999999974
Q ss_pred --EEEEeCCcccc-e---------eecCCCCcccc--eeeecCHHHHHHhccccCCCC--CCeEEEec
Q 010422 333 --KYVIDPGFVKA-R---------LYDPVKGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRLY 384 (511)
Q Consensus 333 --~~VI~~g~~~~-~---------~yd~~~~~~~~--~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~ 384 (511)
++||-.++.=. + .|-...|-+.. ...|.....+.|-+||.=|.. .|..+.+=
T Consensus 824 ~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD 891 (928)
T PRK08074 824 ELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLD 891 (928)
T ss_pred ceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEec
Confidence 56654443210 0 00000111111 112455677899999999988 67666553
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.14 E-value=3.7e-10 Score=96.68 Aligned_cols=102 Identities=29% Similarity=0.305 Sum_probs=64.4
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCC-------
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS------- 102 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~------- 102 (511)
+++++.||||+|||+++..++..........+++++.|++.++.+..+.+...... ...+.+.........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 46899999999999888887776655444567889999999999988887766542 233333322111110
Q ss_pred -------hhhhHHHHhhC--cCCCCCCchhHhhhhhhhhh
Q 010422 103 -------TSTRIKEALLD--PYLSRYSAIIVDEAHERTVH 133 (511)
Q Consensus 103 -------~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~ 133 (511)
+...+...... .....++++|+||+|.....
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc
Confidence 11111111111 13456899999999965443
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.13 E-value=1.4e-09 Score=115.39 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=75.7
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcC---CCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTL---YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 267 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~ 267 (511)
++.+||.|. ..+.|.+.++ ..++.+|.........+.. ....+...+.+..+...+. .+.||||-+.|.+..
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~--~grPVLIgT~SIe~S 437 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYN-LEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQ--TGRPILIGTTTIEKS 437 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHh--cCCCEEEeeCCHHHH
Confidence 678899998 3345555554 3455555432111111100 0112233445555555543 478999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEccCCC-CHHHHHhhcCcCCCCC-eEEEEeccccccCCCC
Q 010422 268 ESVERLVQERLLQLPEASRKLVTVPIFSSL-PSEQQMRVFAPAAAGF-RKVILATNIAETSVTI 329 (511)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l-~~~~r~~i~~~f~~g~-~~vlvaT~~~~~Gvdi 329 (511)
+.++..|.+. ++..-.+++.- ..+.-..|+.. .|+ -.|.||||+|+||.||
T Consensus 438 E~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 438 ELLSQLLKEY---------RLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred HHHHHHHHHc---------CCccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCe
Confidence 9999999886 77667777752 21222233333 343 4799999999999998
No 142
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.12 E-value=9.9e-10 Score=116.44 Aligned_cols=130 Identities=11% Similarity=0.018 Sum_probs=82.9
Q ss_pred EEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHHHHhh
Q 010422 33 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALL 112 (511)
Q Consensus 33 ~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~l~ 112 (511)
+..+.+|||||.....++...... |+.++++.|.-.++.+..+++...++. ..+. .+++..+...+...|+.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~--Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~---~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA--GRGALVVVPDQRDVDRLEAALRALLGA---GDVA---VLSAGLGPADRYRRWLA 235 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHHHHcCC---CcEE---EECCCCCHHHHHHHHHH
Confidence 344556999997766666544332 557889999999999999999877751 1222 24566666666664432
Q ss_pred ---Cc-------------CCCCCCchhHhhhhhhhhhhHHHHH-HHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCC
Q 010422 113 ---DP-------------YLSRYSAIIVDEAHERTVHTDVLLG-LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDT 175 (511)
Q Consensus 113 ---~~-------------~l~~~~~iIiDE~H~r~~~~~~ll~-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 175 (511)
.. -+.++++||+||-|+.+...+.... -.+++...|.+
T Consensus 236 ~~~G~~~IViGtRSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~------------------------- 290 (665)
T PRK14873 236 VLRGQARVVVGTRSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH------------------------- 290 (665)
T ss_pred HhCCCCcEEEEcceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-------------------------
Confidence 10 1778999999999965443322111 12222222211
Q ss_pred CCccccccccccCCCCccEEEeccCCCHHHHHh
Q 010422 176 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSE 208 (511)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~ 208 (511)
..++.+|+.|||...+.+..
T Consensus 291 -------------~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 291 -------------QHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred -------------HcCCcEEEECCCCCHHHHHH
Confidence 16789999999998887653
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.10 E-value=1.2e-10 Score=104.94 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHhc-------CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 13 LPIASVEKRLVEEVRK-------NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~-------~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
+.++++|++++..+.+ ++.+++.+|||||||.++..++.+... .++++.|+..++.|..+.+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHh
Confidence 5678999999999873 689999999999999776655554432 6778889999999988877433
No 144
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.95 E-value=5.3e-08 Score=100.04 Aligned_cols=114 Identities=21% Similarity=0.250 Sum_probs=90.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC---CeEEEEeccccccCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG---FRKVILATNIAETSVTI 329 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g---~~~vlvaT~~~~~Gvdi 329 (511)
.+.+||||..=....+-+.+++.-+ ++..+.+.|+++.++|...++.|... +.-.+++|-+.+.|||+
T Consensus 486 ~GhRVLIFSQmt~mLDILeDyc~~R---------~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL 556 (971)
T KOG0385|consen 486 QGHRVLIFSQMTRMLDILEDYCMLR---------GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINL 556 (971)
T ss_pred CCCeEEEeHHHHHHHHHHHHHHHhc---------CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccc
Confidence 4788999976555555555555444 88999999999999999999888643 45679999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHh
Q 010422 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (511)
Q Consensus 330 p~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (511)
-..++||- ||..++ |..--++.+|+-|.|-..+=.+|+|+++...+
T Consensus 557 ~aADtVIl--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 557 TAADTVIL--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccEEEE--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 99999998 987664 56666778888888777788999999876543
No 145
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=6.3e-08 Score=102.85 Aligned_cols=122 Identities=21% Similarity=0.174 Sum_probs=76.5
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCC----CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
++.+||.|. ..++|.+.++ -+++.+|... |+...-.+. .......+.+..+...+. .+.||||-+.|.+.
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPTnk-P~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~--~GrPVLIgT~SVe~ 451 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYK-LEVTVIPTNR-PRRRQDWPDQVYKTEIAKWRAVANETAEMHK--QGRPVLVGTTSVEK 451 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CcEEEcCCCC-CeeeecCCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEeeCCHHH
Confidence 788999998 4445666654 4455555432 211111111 112333445555555554 38899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCC-CCHHHHHhhcCcCCCCC-eEEEEeccccccCCCC
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSS-LPSEQQMRVFAPAAAGF-RKVILATNIAETSVTI 329 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~-l~~~~r~~i~~~f~~g~-~~vlvaT~~~~~Gvdi 329 (511)
.+.++..|.+. ++..-.+++. ...+.-..|+.. .|+ -.|.||||+|+||-||
T Consensus 452 SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 452 SELLSALLQEQ---------GIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred HHHHHHHHHHc---------CCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCE
Confidence 99999999886 6666666765 222222233332 344 4799999999999998
No 146
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.90 E-value=6.8e-08 Score=101.56 Aligned_cols=292 Identities=17% Similarity=0.162 Sum_probs=154.3
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCC----
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS---- 102 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~---- 102 (511)
......+|.+|.||||||.+..|+....- .+...++++.-++.++.+...++.... +...+-|.........
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDGRPY 122 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeecccccccccccc
Confidence 45668899999999999988887766532 234578888899999999888765331 1111222211111111
Q ss_pred -----hhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCC
Q 010422 103 -----TSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNG 177 (511)
Q Consensus 103 -----~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 177 (511)
....+.++ ....+.+++++||||+-.. -..+.-..+++... .
T Consensus 123 ~rLivqIdSL~R~-~~~~l~~yDvVIIDEv~sv--L~qL~S~Tm~~~~~------------------------------v 169 (824)
T PF02399_consen 123 DRLIVQIDSLHRL-DGSLLDRYDVVIIDEVMSV--LNQLFSPTMRQREE------------------------------V 169 (824)
T ss_pred CeEEEEehhhhhc-ccccccccCEEEEehHHHH--HHHHhHHHHhhHHH------------------------------H
Confidence 11111111 2345778999999997411 00111111111000 0
Q ss_pred ccccccccccCCCCccEEEeccCCCHHH---HHhhhCCCCeEEeCCcc----ccc-cEEEcCC-----------------
Q 010422 178 INTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFGCAKAVHVQGRQ----FPV-EILYTLY----------------- 232 (511)
Q Consensus 178 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~---l~~~~~~~~~~~~~~~~----~~~-~~~~~~~----------------- 232 (511)
.+.+..+.+ .-.++|+|-||++... ++..-++.++..+.+.. +.- .......
T Consensus 170 ~~~L~~lI~---~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~ 246 (824)
T PF02399_consen 170 DNLLKELIR---NAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENA 246 (824)
T ss_pred HHHHHHHHH---hCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCccccc
Confidence 111111111 3347888888885543 33433433322221110 000 0000000
Q ss_pred ---CC-------------CchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC
Q 010422 233 ---PE-------------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (511)
Q Consensus 233 ---~~-------------~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~ 296 (511)
+. ..........+..-. ..+.+|-||++|...++.+++..... ...|..++|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~ 315 (824)
T PF02399_consen 247 DTSPTPKHSPDPTATAAISNDETTFFSELLARL--NAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNST 315 (824)
T ss_pred ccCCCcCCCCccccccccccchhhHHHHHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCC
Confidence 00 000111222222222 22677889999999998888887765 5677777776
Q ss_pred CCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC
Q 010422 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (511)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~ 376 (511)
-+.. .+.+ =++.+|++=|++...|+++.+..+=--+++ ..+.. .-.+..+..|+.||+=...
T Consensus 316 ~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~y-----vk~~~-------~gpd~~s~~Q~lgRvR~l~ 377 (824)
T PF02399_consen 316 DKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAY-----VKPMS-------YGPDMVSVYQMLGRVRSLL 377 (824)
T ss_pred CCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEE-----ecCCC-------CCCcHHHHHHHHHHHHhhc
Confidence 5554 2221 357899999999999999964422111111 00111 1245566899999987666
Q ss_pred CCeEEEecChh
Q 010422 377 PGKCFRLYPEN 387 (511)
Q Consensus 377 ~G~~~~l~~~~ 387 (511)
..+.|.-+...
T Consensus 378 ~~ei~v~~d~~ 388 (824)
T PF02399_consen 378 DNEIYVYIDAS 388 (824)
T ss_pred cCeEEEEEecc
Confidence 66666666433
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.87 E-value=8.6e-07 Score=93.20 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC----C
Q 010422 237 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA----G 312 (511)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~----g 312 (511)
|.+.....+..+... .+|.+||-++|+...+.++..|...+ .+.+. +.|..+ .+...++.|++ |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~~l-~qg~~~--~~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI--------PAEIV-IQSEKN--RLASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc--------CCCEE-EeCCCc--cHHHHHHHHHHhhcCC
Confidence 444555666665544 37899999999999999999997653 23333 355442 23445666665 5
Q ss_pred CeEEEEeccccccCCCC
Q 010422 313 FRKVILATNIAETSVTI 329 (511)
Q Consensus 313 ~~~vlvaT~~~~~Gvdi 329 (511)
...||++|+.+-.|||+
T Consensus 522 ~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDL 538 (636)
T ss_pred CCcEEEeCCcccccccc
Confidence 78999999999999999
No 148
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.81 E-value=5e-09 Score=110.79 Aligned_cols=205 Identities=17% Similarity=0.248 Sum_probs=133.1
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccC--------
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRT-------- 101 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-------- 101 (511)
.++++-+|||||||..+...+.......++.+++++.|..+++....+++.+..... |..+.-. ++..
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~---tgd~~pd~~~v~ 1019 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIEL---TGDVTPDVKAVR 1019 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEec---cCccCCChhhee
Confidence 467888999999998888888777777777889999999999988887776655433 3322211 1111
Q ss_pred ------Chhhh----HHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhcc
Q 010422 102 ------STSTR----IKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDR 171 (511)
Q Consensus 102 ------~~~~~----i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 171 (511)
.+..+ ...|.....+++++.+|+||.| .-+.++|+.++++..+
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~h---------------------------llg~~rgPVle~ivsr 1072 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIH---------------------------LLGEDRGPVLEVIVSR 1072 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccc---------------------------cccCCCcceEEEEeec
Confidence 01111 1134445668889999999998 4566778888777665
Q ss_pred CCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEe--CCccccccEEEcCCCCCchHHHHHH----H
Q 010422 172 GNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHV--QGRQFPVEILYTLYPEPDYLDATLI----T 244 (511)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~ 244 (511)
... ......+.+|++++|--+ |+.++++|++..+.... ..++.|.+.+....|...|...+.. .
T Consensus 1073 ~n~---------~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa 1143 (1230)
T KOG0952|consen 1073 MNY---------ISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPA 1143 (1230)
T ss_pred ccc---------CccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHH
Confidence 432 111223677888887555 99999999987766444 3455566666666666444433322 1
Q ss_pred HHHHhhcCCCCcEEEEcCCHHHHHHHHHHH
Q 010422 245 IFQVHLDEAPGDILVFLTGQEEIESVERLV 274 (511)
Q Consensus 245 ~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l 274 (511)
.-.+....+..++|||+.++......+.-|
T Consensus 1144 ~qaik~~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1144 FQAIKTHSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred HHHHhcCCCCCceEEEeecccccccchHhH
Confidence 222334566889999999987555444333
No 149
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.71 E-value=7.4e-07 Score=92.25 Aligned_cols=114 Identities=17% Similarity=0.305 Sum_probs=89.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe--EEEEeccccccCCCCCC
Q 010422 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR--KVILATNIAETSVTIPG 331 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~--~vlvaT~~~~~Gvdip~ 331 (511)
+.++|+|..++....-+...|... .++..+.+.|..+...|..+++.|.++.. -.|++|-+-+.|+|+-+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 568999999999988888888741 28999999999999999999999997754 46889999999999988
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHh
Q 010422 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (511)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (511)
.+-||- |||.++ |.+-.++.-|+=|-|-...=.+|+|++....+
T Consensus 618 AnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 618 ANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred CceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 887776 998775 55555555555555544456799998765443
No 150
>COG4889 Predicted helicase [General function prediction only]
Probab=98.71 E-value=4e-08 Score=102.03 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=77.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHh----cCCCCCCC--eEEEEccCCCCHHHHHhhc---CcCCCCCeEEEEeccccccC
Q 010422 256 DILVFLTGQEEIESVERLVQERLL----QLPEASRK--LVTVPIFSSLPSEQQMRVF---APAAAGFRKVILATNIAETS 326 (511)
Q Consensus 256 ~~LVF~~s~~~~~~l~~~l~~~~~----~~~~~~~~--~~v~~lh~~l~~~~r~~i~---~~f~~g~~~vlvaT~~~~~G 326 (511)
+.+-||.+.+....++..+....+ ++..+..+ +.+....|.|..-+|...+ ..|.....+||=---.+..|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 467888888777777766655433 22222233 4444456899988886554 35677888999888999999
Q ss_pred CCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCe
Q 010422 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGK 379 (511)
Q Consensus 327 vdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~ 379 (511)
||+|+.+-||- |||+ .|.-+.+|-+||.-|..+|+
T Consensus 542 VDVPaLDsViF--------f~pr----------~smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 542 VDVPALDSVIF--------FDPR----------SSMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred CCccccceEEE--------ecCc----------hhHHHHHHHHHHHHHhCcCC
Confidence 99999999997 7753 45567999999999988654
No 151
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.65 E-value=1.7e-06 Score=91.46 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC--C-eEEEEeccccccCCCCCCeEEEEeC
Q 010422 262 TGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG--F-RKVILATNIAETSVTIPGIKYVIDP 338 (511)
Q Consensus 262 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g--~-~~vlvaT~~~~~Gvdip~v~~VI~~ 338 (511)
........+.+.+.+. .++.+..+||.|+..+|..+++.|.+. . .-.+.+|-+-+.|+++-+...||-
T Consensus 602 sny~~tldl~e~~~~~--------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil- 672 (776)
T KOG0390|consen 602 SNYTQTLDLFEQLCRW--------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL- 672 (776)
T ss_pred ccHHHHHHHHHHHHhh--------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-
Confidence 4444444444444443 288999999999999999999999653 3 345777889999999988887776
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChh
Q 010422 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (511)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 387 (511)
||+ ...++.=.|-++||=|.| +=..|+|++..
T Consensus 673 -------~D~----------dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 673 -------FDP----------DWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred -------eCC----------CCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 995 445666788888888888 45677887654
No 152
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.47 E-value=8.1e-06 Score=80.38 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=66.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-CeEE-EEeccccccCCCC
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKV-ILATNIAETSVTI 329 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~v-lvaT~~~~~Gvdi 329 (511)
.++.+.+||+.-..-.+.+...+.++ ++....+.|..+..+|....+.|... +.+| +++-.++..|+|+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 44678999999999999999999887 88888899999999999999998744 4454 7788899999999
Q ss_pred CCeEEEEe
Q 010422 330 PGIKYVID 337 (511)
Q Consensus 330 p~v~~VI~ 337 (511)
.+-+.||-
T Consensus 561 tAa~~VVF 568 (689)
T KOG1000|consen 561 TAASVVVF 568 (689)
T ss_pred eccceEEE
Confidence 99999984
No 153
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.45 E-value=2.2e-09 Score=99.51 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=38.3
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.+..|+-..+.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~ 49 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA 49 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 34455666777777888888999999999999999999999985554
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=2.2e-06 Score=92.49 Aligned_cols=161 Identities=24% Similarity=0.250 Sum_probs=103.6
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcC----CCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTL----YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
++-+||.|. ...+|.+.++ -.++.+|... |+...-.. ........+.+..+...+. .+.||||-+.|.+.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~-L~Vv~IPTnr-P~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SVe~ 640 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYK-LDVVVIPTNR-PIARKDKEDLVYKTKREKYNAVIEEITELSE--AGRPVLVGTTSVEI 640 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHHH--CCCCEEEEeCcHHH
Confidence 577888888 4445555554 3455555432 22111111 1122334566666666664 48899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCC-eEEEEeccccccCCCCC--------CeEEEEe
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKVILATNIAETSVTIP--------GIKYVID 337 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~vlvaT~~~~~Gvdip--------~v~~VI~ 337 (511)
.+.+++.|... ++..-.+++.....|-.-|-++ |. -.|.||||+|+||.||- +=-+||-
T Consensus 641 SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~A---G~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIg 708 (1112)
T PRK12901 641 SELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEA---GQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIG 708 (1112)
T ss_pred HHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhc---CCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEE
Confidence 99999999886 5555555555333333333333 43 47999999999999995 2224443
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
+. .+.|..--.|-.|||||.| +|.+-.+++-+
T Consensus 709 Te------------------rheSrRID~QLrGRaGRQGDPGsS~f~lSLE 741 (1112)
T PRK12901 709 TE------------------RHESRRVDRQLRGRAGRQGDPGSSQFYVSLE 741 (1112)
T ss_pred cc------------------CCCcHHHHHHHhcccccCCCCCcceEEEEcc
Confidence 22 4677888899999999999 89876666543
No 155
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.39 E-value=8.7e-06 Score=88.23 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=89.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC---CCeEEEEeccccccCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA---GFRKVILATNIAETSVTI 329 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~---g~~~vlvaT~~~~~Gvdi 329 (511)
.+.+||||..=....+-++++|..+ +++.--+.|++..+.|++.+..|.. ...-.|+||-+-+.|||+
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINL 768 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINL 768 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccc
Confidence 3678999998888888888888876 8999999999999999999998853 356789999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChhhHhh
Q 010422 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFDK 391 (511)
Q Consensus 330 p~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~ 391 (511)
-..+.||- ||+.++ |. +=+|-..||.|-| .=.+|+|+++..++.
T Consensus 769 atADTVII--------FDSDWN-------PQ---NDLQAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 769 ATADTVII--------FDSDWN-------PQ---NDLQAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred cccceEEE--------eCCCCC-------cc---hHHHHHHHHHhhcccceEEEEEEecCCchHH
Confidence 88888776 886543 33 3445555555555 557999999887754
No 156
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.15 E-value=8.9e-06 Score=73.66 Aligned_cols=92 Identities=24% Similarity=0.281 Sum_probs=55.2
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHHH
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 109 (511)
++++++||||+||||.+..+.........+..++..-..|..+.++.+.+++..+..+ . ..............
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~------~-~~~~~~~~~~~~~~ 74 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPF------Y-VARTESDPAEIARE 74 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE------E-ESSTTSCHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcccc------c-hhhcchhhHHHHHH
Confidence 4678999999999988877766554443344555666788888888888888776431 1 00111112222223
Q ss_pred HhhCcCCCCCCchhHhhhh
Q 010422 110 ALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 110 ~l~~~~l~~~~~iIiDE~H 128 (511)
.+.....+++++|+||-+.
T Consensus 75 ~l~~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-S
T ss_pred HHHHHhhcCCCEEEEecCC
Confidence 3332233468999999985
No 157
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.11 E-value=1.6e-07 Score=85.66 Aligned_cols=48 Identities=27% Similarity=0.298 Sum_probs=40.7
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.++.|+.+...+++...+.+|+.+.|.||+||||||++-.+.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 445566677777778888899999999999999999999999987775
No 158
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=8.2e-08 Score=88.66 Aligned_cols=50 Identities=26% Similarity=0.324 Sum_probs=40.0
Q ss_pred ChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 2 ~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++++.+.+..|.-.+..+.+...+.+|+.+.|+||+|+||||++-.++-
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45566677777764457788888899999999999999999999877663
No 159
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.09 E-value=4.7e-05 Score=81.16 Aligned_cols=125 Identities=22% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCC-eEEE
Q 010422 239 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKVI 317 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~vl 317 (511)
.+.+..+...+.. +.|+||-..+.+..+.+.+.|.+. ++....+.+.-...+-..+-++ |. --|-
T Consensus 416 ~Aiv~~I~~~~~~--gqPvLvgT~sie~SE~ls~~L~~~---------~i~h~VLNAk~h~~EA~Iia~A---G~~gaVT 481 (822)
T COG0653 416 KAIVEDIKERHEK--GQPVLVGTVSIEKSELLSKLLRKA---------GIPHNVLNAKNHAREAEIIAQA---GQPGAVT 481 (822)
T ss_pred HHHHHHHHHHHhc--CCCEEEcCcceecchhHHHHHHhc---------CCCceeeccccHHHHHHHHhhc---CCCCccc
Confidence 3444455555543 889999999999999999999875 4444444443333333333332 33 3688
Q ss_pred EeccccccCCCCCCeEE---EEeCCcccceeecCCCCcccceee-ecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 318 LATNIAETSVTIPGIKY---VIDPGFVKARLYDPVKGMESLLVV-PISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 318 vaT~~~~~Gvdip~v~~---VI~~g~~~~~~yd~~~~~~~~~~~-p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
||||+|.+|-||---.- |...| |...+.+. -.|.--=.|-.||+||.| +|..-.+.+-++
T Consensus 482 iATNMAGRGTDIkLg~~~~~V~~lG-----------GL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 482 IATNMAGRGTDIKLGGNPEFVMELG-----------GLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred cccccccCCcccccCCCHHHHHHhC-----------CcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 99999999999932211 22211 11111111 223333459999999999 887666655443
No 160
>PF13245 AAA_19: Part of AAA domain
Probab=98.05 E-value=1.5e-05 Score=60.03 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=40.5
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhccc--cCCCeEEEEeCccHHHHHHHHHHH
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRV 79 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~ 79 (511)
++..+..++|.||+|||||+.+...+..... ...+..++++.|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4454667778999999999666555544431 122567999999999999888876
No 161
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.99 E-value=5.7e-06 Score=69.93 Aligned_cols=103 Identities=26% Similarity=0.377 Sum_probs=52.3
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhcccc----CCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCC
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS 102 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~----~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 102 (511)
++++.++|.||+|+|||+++..++...... .+...+.+..|...........+....+..... ...
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~ 71 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----------RQT 71 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------TS-
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------cCC
Confidence 356789999999999999988887654211 012334444444444455566666665543222 111
Q ss_pred hh---hhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHH
Q 010422 103 TS---TRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (511)
Q Consensus 103 ~~---~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~ 144 (511)
.. ..+...+... ...++||||+|... ....+..++.+
T Consensus 72 ~~~l~~~~~~~l~~~---~~~~lviDe~~~l~--~~~~l~~l~~l 111 (131)
T PF13401_consen 72 SDELRSLLIDALDRR---RVVLLVIDEADHLF--SDEFLEFLRSL 111 (131)
T ss_dssp HHHHHHHHHHHHHHC---TEEEEEEETTHHHH--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CCeEEEEeChHhcC--CHHHHHHHHHH
Confidence 11 1122222211 12689999999753 35555555544
No 162
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.93 E-value=3.8e-06 Score=74.68 Aligned_cols=48 Identities=31% Similarity=0.388 Sum_probs=41.9
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+..+.|.-..+.+.+...+.+|+.++|+||.||||||++--+-
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 456777888999999999999999999999999999999999885443
No 163
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=6.4e-07 Score=83.05 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=32.2
Q ss_pred HHhhccCCCH-HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHH
Q 010422 7 LQQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 7 ~~~~~~l~~~-~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~ 49 (511)
.+....++.. +..+++...+.+|+.+++.|||||||||++-..
T Consensus 7 ~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l 50 (235)
T COG1122 7 ENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLL 50 (235)
T ss_pred EEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 3344455554 555666777889999999999999999998544
No 164
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=4.8e-06 Score=72.61 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=40.5
Q ss_pred CChhhHHHhhccCCCHH--HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIAS--VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~--~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|.++.+.+.+-.|+-.+ ..+++...+.+|+.+++.||+||||||++.++.
T Consensus 1 M~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 1 MCMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred CceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 45555666666776544 788888899999999999999999999987775
No 165
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.80 E-value=2e-05 Score=68.93 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=42.1
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|+++.+.++.+.-..+..++...+.+|+.+.++||+|+||||++...-
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s 48 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS 48 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH
Confidence 356788888888888899999999999999999999999999886654
No 166
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00014 Score=72.60 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhcccc---CC-CeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFC---RD-GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~---~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 104 (511)
..+++++||||+||||.+..+....... .+ +..++-+-+.|..+..+.+.+++..+..+ .+. . ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~------~---~~ 242 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAI------E---SF 242 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Eee------C---cH
Confidence 4588999999999998877665433221 12 22334444667777666665555444322 110 0 11
Q ss_pred hhHHHHhhCcCCCCCCchhHhhhhhh
Q 010422 105 TRIKEALLDPYLSRYSAIIVDEAHER 130 (511)
Q Consensus 105 ~~i~~~l~~~~l~~~~~iIiDE~H~r 130 (511)
..+...+.. +.++++|+||++..-
T Consensus 243 ~~l~~~L~~--~~~~DlVLIDTaGr~ 266 (388)
T PRK12723 243 KDLKEEITQ--SKDFDLVLVDTIGKS 266 (388)
T ss_pred HHHHHHHHH--hCCCCEEEEcCCCCC
Confidence 223333322 367999999999743
No 167
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.79 E-value=1.6e-07 Score=85.07 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=69.3
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
|+++.+.++.|......+++...+.+|..+++.||+||||||.+-++- . ++.|+.+-+.-..+.+...
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMIN--r----------Liept~G~I~i~g~~i~~~ 68 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN--R----------LIEPTSGEILIDGEDISDL 68 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHh--c----------ccCCCCceEEECCeecccC
Confidence 356777888888888888888899999999999999999999874442 1 2223332222222233333
Q ss_pred hCCccCCeeeEEEeecccCChhhhHHHHhhCcCCCCC
Q 010422 83 SGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRY 119 (511)
Q Consensus 83 ~~~~~~~~vg~~~~~~~~~~~~~~i~~~l~~~~l~~~ 119 (511)
....+...+||..+....++..+..+++..-|.+..+
T Consensus 69 d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 69 DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred CHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 3333446788998888888887776655544444433
No 168
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.78 E-value=6.2e-05 Score=68.38 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 78 (511)
+.+-|++++..+..+ +..+|.||.||||||++-.+. ..... .+..++++.|+..++....+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~-~~~~~-~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALA-EALEA-AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHH-HHHHH-TT--EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHH-HHHHh-CCCeEEEECCcHHHHHHHHHh
Confidence 456799999988533 478899999999998765533 22222 246788889999888776654
No 169
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.77 E-value=0.0003 Score=76.35 Aligned_cols=178 Identities=19% Similarity=0.244 Sum_probs=105.2
Q ss_pred ccEEEeccCCCH-HH---HHhhhCCC-----CeEEeCCccccc---cEEEcCC------CCCchHHHHHHHHHHHhhcCC
Q 010422 192 LKLIIMSASLDA-RG---FSEYFGCA-----KAVHVQGRQFPV---EILYTLY------PEPDYLDATLITIFQVHLDEA 253 (511)
Q Consensus 192 ~~~i~~SAT~~~-~~---l~~~~~~~-----~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 253 (511)
..+|++|||+.+ .. +.+.+|-. ..+.++.. ++. ...|... ...++.+.....+..+.. .
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~Sp-F~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~- 533 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSP-FDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-K- 533 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCC-CCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-c-
Confidence 457999999943 33 33444522 23333332 322 1222221 223466667777777766 3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCC----CCCeEEEEeccccccCCCC
Q 010422 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA----AGFRKVILATNIAETSVTI 329 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~----~g~~~vlvaT~~~~~Gvdi 329 (511)
++.+|||++|.+..+.++..|.... +..+. .++.. .+.++++.|+ +|...|+++|..+..|||+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL--------RLMLL-VQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc--------CCcEE-EeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 5569999999999999999887531 22333 24532 3556665454 5778899999999999999
Q ss_pred CC--eEEEEeCCcccceeecCC----------CCcccc--eeeecCHHHHHHhccccCCCC--CCeEEEec
Q 010422 330 PG--IKYVIDPGFVKARLYDPV----------KGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRLY 384 (511)
Q Consensus 330 p~--v~~VI~~g~~~~~~yd~~----------~~~~~~--~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~ 384 (511)
|+ .++||-.++.=..--||. .|.... ...|.....+.|-+||.=|.. .|..+.+=
T Consensus 602 pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 602 PGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred CCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 87 567765554311100110 011111 112444556899999999987 67666554
No 170
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.71 E-value=4.3e-06 Score=72.70 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=43.3
Q ss_pred hhhHHHhhccCCCH-HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc
Q 010422 3 RQKILQQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (511)
Q Consensus 3 ~~~~~~~~~~l~~~-~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~ 55 (511)
++++.+..+.|+-- +..+++...+.+|+.+.++||+|+||||++-++......
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 35677888888754 478889999999999999999999999998777665543
No 171
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.70 E-value=3.1e-07 Score=80.98 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=68.2
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (511)
.+..++-.+..+.+...+.+|+.+.+.||+||||||++-.+.-..... ...+.+-- ........ .+. ..
T Consensus 6 l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g-~~~~~~~~----~~~----~~ 74 (163)
T cd03216 6 ITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD--SGEILVDG-KEVSFASP----RDA----RR 74 (163)
T ss_pred EEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECC-EECCcCCH----HHH----Hh
Confidence 334444334555666678899999999999999999987665432221 22233211 10000000 000 12
Q ss_pred CeeeEEEeecccCChhhhHHHHhhCcCCCCCCchhHhhh--hhhhhhhHHHHHHHHHH
Q 010422 89 QRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (511)
Q Consensus 89 ~~vg~~~~~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~--H~r~~~~~~ll~~l~~~ 144 (511)
..++|..+ .+...+.+..+....+.+.+++++||- +........+..+++++
T Consensus 75 ~~i~~~~q----LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 128 (163)
T cd03216 75 AGIAMVYQ----LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL 128 (163)
T ss_pred cCeEEEEe----cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 34667655 555555555555566777899999993 33344445555666554
No 172
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=0.00023 Score=77.83 Aligned_cols=184 Identities=14% Similarity=0.143 Sum_probs=105.0
Q ss_pred cEEEeccCC-CHHHHHhhhCCCCeEEe-CCcccc-----------------ccEEEcCCCCCchHHHHHHHHHHHhhcCC
Q 010422 193 KLIIMSASL-DARGFSEYFGCAKAVHV-QGRQFP-----------------VEILYTLYPEPDYLDATLITIFQVHLDEA 253 (511)
Q Consensus 193 ~~i~~SAT~-~~~~l~~~~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (511)
.+|++|||+ +.+.+.+.+|-...... .....| +...|......++.......+..+....
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~- 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII- 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC-
Confidence 689999999 77778888774221111 111111 1112222222445666666666665544
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHH--HhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC----CCeEEEEec--ccccc
Q 010422 254 PGDILVFLTGQEEIESVERLVQER--LLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA----GFRKVILAT--NIAET 325 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~--~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~----g~~~vlvaT--~~~~~ 325 (511)
+|.+|||+||.+..+.+.+.+.+. ...+.. ...+..=..+. .++..+++.|++ |.--|++|+ ..+..
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~---~k~i~~E~~~~--~~~~~~l~~f~~~~~~~~gavL~av~gGk~sE 596 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEK---KKLIFVETKDA--QETSDALERYKQAVSEGRGAVLLSVAGGKVSE 596 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc---CCCEEEeCCCc--chHHHHHHHHHHHHhcCCceEEEEecCCcccC
Confidence 688999999999999998877642 000100 11222111111 466777777743 456799999 89999
Q ss_pred CCCCCC--eEEEEeCCcccceeecCC--------------CCcccceeeecCHHHHHHhccccCCCCC--CeEEEe
Q 010422 326 SVTIPG--IKYVIDPGFVKARLYDPV--------------KGMESLLVVPISKAQALQRSGRAGREGP--GKCFRL 383 (511)
Q Consensus 326 Gvdip~--v~~VI~~g~~~~~~yd~~--------------~~~~~~~~~p~s~~~~~Qr~GRaGR~~~--G~~~~l 383 (511)
|||+++ .+.||-.|+.-....|+. .+...+. .........|-+||+=|... |..+.+
T Consensus 597 GIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 597 GIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFY-EFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred ccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHH-HHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 999987 467776776432111111 1110000 01223457899999999984 544433
No 173
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.69 E-value=7.4e-05 Score=72.15 Aligned_cols=71 Identities=13% Similarity=-0.016 Sum_probs=46.6
Q ss_pred hccCCCHHHHHH----HHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC----CeEEEEeCccHHHHHHHHHHHH
Q 010422 10 RKSLPIASVEKR----LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRRVAAVTVAKRVA 80 (511)
Q Consensus 10 ~~~l~~~~~q~~----~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~----~~~i~~~~p~~~l~~~~~~~~~ 80 (511)
...|++++.|.+ +...+.+|+++++.||||+|||..+..+++......+ +.+++++.++.....+....+.
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 456678899988 6666788999999999999999443333322111111 2367777777776666554443
No 174
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.69 E-value=7.4e-05 Score=72.15 Aligned_cols=71 Identities=13% Similarity=-0.016 Sum_probs=46.6
Q ss_pred hccCCCHHHHHH----HHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC----CeEEEEeCccHHHHHHHHHHHH
Q 010422 10 RKSLPIASVEKR----LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRRVAAVTVAKRVA 80 (511)
Q Consensus 10 ~~~l~~~~~q~~----~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~----~~~i~~~~p~~~l~~~~~~~~~ 80 (511)
...|++++.|.+ +...+.+|+++++.||||+|||..+..+++......+ +.+++++.++.....+....+.
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 456678899988 6666788999999999999999443333322111111 2367777777776666554443
No 175
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.69 E-value=3.3e-05 Score=70.49 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...+.+...+.+|+.+.|.||+||||||++..+-.
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45566777789999999999999999999876653
No 176
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00065 Score=73.95 Aligned_cols=181 Identities=19% Similarity=0.217 Sum_probs=106.3
Q ss_pred ccEEEeccCC-CHHHHHhhhCC---CCeE--EeCCccccccE---EEcCC----CC-CchHHHHHHHHHHHhhcCCCCcE
Q 010422 192 LKLIIMSASL-DARGFSEYFGC---AKAV--HVQGRQFPVEI---LYTLY----PE-PDYLDATLITIFQVHLDEAPGDI 257 (511)
Q Consensus 192 ~~~i~~SAT~-~~~~l~~~~~~---~~~~--~~~~~~~~~~~---~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~ 257 (511)
..+|++|||+ +.+.+..+++. .... .....+++... .+... +. +.+.......+..+.... ++++
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 482 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS-PGGV 482 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc-CCCE
Confidence 4589999999 44555555432 2111 11222212111 11111 11 245666666666666555 6699
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe-EEEEeccccccCCCCCCe--EE
Q 010422 258 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIPGI--KY 334 (511)
Q Consensus 258 LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gvdip~v--~~ 334 (511)
|||+||.+..+.+++.+.... .......+|..+.+ ..++.|+++.- -++|+|..+..|||+|+- +.
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCCeeE
Confidence 999999999999999987641 11234446655544 55566654444 999999999999999875 44
Q ss_pred EEeCCcccc----------eeecCCCCc--ccceeeecCHHHHHHhccccCCCC--CCeEEEec
Q 010422 335 VIDPGFVKA----------RLYDPVKGM--ESLLVVPISKAQALQRSGRAGREG--PGKCFRLY 384 (511)
Q Consensus 335 VI~~g~~~~----------~~yd~~~~~--~~~~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~ 384 (511)
||-.|+.=- ..|....|. -.....|.......|-+||.=|.. .|.++.+=
T Consensus 552 vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 552 VVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 443333111 011111110 011234666778999999999976 67777664
No 177
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.66 E-value=2.1e-06 Score=77.52 Aligned_cols=47 Identities=28% Similarity=0.325 Sum_probs=42.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.|.-+....++...+..|+.+-+.||+|+||||.+-.++
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmIL 49 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMIL 49 (300)
T ss_pred eEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHh
Confidence 56778889999988899999999999999999999999999887665
No 178
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.65 E-value=3.1e-06 Score=82.37 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=77.8
Q ss_pred ChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-----CCeEEEEeCccHHHHHHHH
Q 010422 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRVAAVTVA 76 (511)
Q Consensus 2 ~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-----~~~~i~~~~p~~~l~~~~~ 76 (511)
+.+++.+.++.|.-....+++...+.+|+.+.+.||+||||||++-.+.--..... ++..+.-++|.+--+..+.
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 35667778888887777888999999999999999999999999876653332221 1223334556544444444
Q ss_pred HHHHHHhCCccCCeeeEEEe-----------------------------ecccCChhhhHHHHhhCcCCCCCCchhHhh
Q 010422 77 KRVAEESGVELGQRVGYSIR-----------------------------FDDRTSTSTRIKEALLDPYLSRYSAIIVDE 126 (511)
Q Consensus 77 ~~~~~~~~~~~~~~vg~~~~-----------------------------~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE 126 (511)
+..+-+....+.+.|+|..+ .....+...+....++.....+..++.+||
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 44444444444444544443 222222223333444555566778999999
No 179
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.65 E-value=1.6e-06 Score=83.82 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=43.5
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|..+++.+..+.|+-....+.+...+.+|+.+++.||+||||||++-.+.-
T Consensus 1 M~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 1 MAELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CcEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 667788888888887656777888899999999999999999999877763
No 180
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.65 E-value=0.0043 Score=67.89 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=46.1
Q ss_pred cCCCHHHHHHHHHHHhc-CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHH
Q 010422 12 SLPIASVEKRLVEEVRK-NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 76 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~-~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~ 76 (511)
.+.+.+-|++++..+.. ++.++|+|+.|+||||++-.+.... ...+..+.++.|+..++....
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~--~~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW--EAAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH--HhCCCeEEEEeCcHHHHHHHH
Confidence 45678889999998876 5789999999999998876654221 122556788888887765443
No 181
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.64 E-value=0.00013 Score=68.23 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHhcCCE-EEEEcCCCCchhchHHHHHhhcc------ccCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRKNDI-LIIVGETGSGKTTQLPQFLFHAG------FCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~-~~i~apTGsGKTt~~~~~l~~~~------~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
+.+.|.+++..+..... .+|.||+|||||+++..++.... ....+..++++.|+-.++....+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 45689999999888887 99999999999977766665541 233466789999999999998888766
No 182
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.61 E-value=0.00034 Score=59.82 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHHHHhc--CCEEEEEcCCCCchhchHHHHHhhc
Q 010422 18 VEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 18 ~q~~~~~~l~~--~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
..+++...+.. +..+++.||+|+|||+++..+....
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44555556655 7889999999999998776665443
No 183
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00029 Score=69.72 Aligned_cols=90 Identities=17% Similarity=0.273 Sum_probs=50.2
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC--ccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCCh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 103 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~--p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 103 (511)
+.+|.+++++||||+||||++..+........+..++.++. +.+..+.++.+.+.+..+..+. .. ..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-----~~--~~---- 202 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-----AV--KD---- 202 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-----ec--CC----
Confidence 34678999999999999988877765543332222333332 4455555555555655553211 00 01
Q ss_pred hhhHHHHhhCcCCCCCCchhHhhhh
Q 010422 104 STRIKEALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 104 ~~~i~~~l~~~~l~~~~~iIiDE~H 128 (511)
...+...+. .+.+.++++||++-
T Consensus 203 ~~~l~~~l~--~l~~~DlVLIDTaG 225 (374)
T PRK14722 203 GGDLQLALA--ELRNKHMVLIDTIG 225 (374)
T ss_pred cccHHHHHH--HhcCCCEEEEcCCC
Confidence 111111121 24567999999985
No 184
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.59 E-value=1.8e-06 Score=77.64 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=38.6
Q ss_pred ChhhHHHhhccCC-CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHH
Q 010422 2 PRQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 2 ~~~~~~~~~~~l~-~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~ 49 (511)
.++++.+..+.|| -....+++...+.+|+.+.|+||.||||||++-.+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~l 50 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSL 50 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHH
Confidence 3566777888885 34566778888999999999999999999988444
No 185
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00056 Score=67.47 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=45.5
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeE-EEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHH
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKL-IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~-i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~ 108 (511)
..++++||||+||||.+..+..... ..+... ++-.-|.|..+..+.+..++..+..+ ... .....+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv------~v~-----~d~~~L~ 309 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV------IAV-----RDEAAMT 309 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE------Eec-----CCHHHHH
Confidence 5789999999999988776665432 222222 22333566555444444444333211 101 1122222
Q ss_pred HHhhCc-CCCCCCchhHhhhhh
Q 010422 109 EALLDP-YLSRYSAIIVDEAHE 129 (511)
Q Consensus 109 ~~l~~~-~l~~~~~iIiDE~H~ 129 (511)
..+... ...++++++||-+-.
T Consensus 310 ~aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHHHHhccCCCEEEEeCccc
Confidence 222111 112589999999753
No 186
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.58 E-value=2.9e-05 Score=70.48 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=38.9
Q ss_pred ChhhHHHhhccCCCHH----HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 2 PRQKILQQRKSLPIAS----VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 2 ~~~~~~~~~~~l~~~~----~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.++++.+....|+-.. ..+.+...+.+|+.+.|+|+.||||||++-.++
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 3455666666666655 677777788999999999999999999987665
No 187
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.55 E-value=3.9e-05 Score=69.82 Aligned_cols=54 Identities=20% Similarity=0.103 Sum_probs=43.5
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC 56 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~ 56 (511)
++++.+....+.-.++...+.=.++.|++..|.||+||||||++-.+..++...
T Consensus 31 li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 31 LIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred eEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 455566666666777888888889999999999999999999998887766554
No 188
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.55 E-value=0.00037 Score=68.53 Aligned_cols=88 Identities=32% Similarity=0.374 Sum_probs=55.3
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCC--CeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRD--GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~--~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (511)
+++++.++||||.||||.+.-+........+ +..++-+-..|..+..+.+..++.++..+. +. .+ ..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv--------~~-~~ 270 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VV--------YS-PK 270 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--Ee--------cC-HH
Confidence 3789999999999999777666555442222 333444556788888888888888876431 11 11 11
Q ss_pred hHHHHhhCcCCCCCCchhHhhhh
Q 010422 106 RIKEALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 106 ~i~~~l~~~~l~~~~~iIiDE~H 128 (511)
.+...+ ..+.++++|.+|=+-
T Consensus 271 el~~ai--~~l~~~d~ILVDTaG 291 (407)
T COG1419 271 ELAEAI--EALRDCDVILVDTAG 291 (407)
T ss_pred HHHHHH--HHhhcCCEEEEeCCC
Confidence 111111 135567899998874
No 189
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.54 E-value=6.8e-05 Score=66.00 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=37.9
Q ss_pred hhHHHhhccCCCHH-HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIAS-VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~-~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.|+... ..+++...+.+|+++.+-||+|+||||++-.+.
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmia 49 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIA 49 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHH
Confidence 45667788887733 557788888999999999999999999876654
No 190
>PRK14974 cell division protein FtsY; Provisional
Probab=97.54 E-value=0.00051 Score=67.32 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=47.4
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC--ccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhH
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~--p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 107 (511)
..++++||+|+||||.+..+..... . .+..+.++. +.|..+..+.+..+...+..+.. . .........+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~-~-~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~------~-~~g~dp~~v~ 211 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLK-K-NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK------H-KYGADPAAVA 211 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-H-cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec------c-cCCCCHHHHH
Confidence 4788999999999987766553321 1 233444443 34555544445455555432210 0 1111111111
Q ss_pred HHHhhCcCCCCCCchhHhhhhhhh
Q 010422 108 KEALLDPYLSRYSAIIVDEAHERT 131 (511)
Q Consensus 108 ~~~l~~~~l~~~~~iIiDE~H~r~ 131 (511)
...+......++++|+||.++...
T Consensus 212 ~~ai~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHHHHhCCCCEEEEECCCccC
Confidence 122211123467899999997443
No 191
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.53 E-value=4.7e-06 Score=75.30 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=42.3
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.+++.+..+.+.-..+...+...+.+|+.+.|.||.||||||++-.++-..
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 456667777888888888899999999999999999999999986665443
No 192
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.53 E-value=7.1e-06 Score=81.64 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEE
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI 95 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~ 95 (511)
.++.+.+...+..|+.+.|+||.||||||++ +..+.+.+|.++.+.--...+.++..+..|..+||..
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLa------------R~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLP 416 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLA------------RLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLP 416 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHH------------HHHHcccccCCCcEEecchhhhcCCHHHhccccCcCc
Confidence 3567788888999999999999999999998 3345556666666654455555666666677777766
Q ss_pred ee
Q 010422 96 RF 97 (511)
Q Consensus 96 ~~ 97 (511)
+.
T Consensus 417 Qd 418 (580)
T COG4618 417 QD 418 (580)
T ss_pred cc
Confidence 53
No 193
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.51 E-value=9e-07 Score=88.99 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=40.3
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|+++++.+.+..|+-..+.+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 1 ~~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~La 50 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAIN 50 (402)
T ss_pred CceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHh
Confidence 45666777777777666667777788999999999999999999887665
No 194
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.50 E-value=2.4e-06 Score=82.62 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=39.9
Q ss_pred hhHHHhhccCC-CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~-~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.++.|+ -....+.+...+.+|+.+.+.||+||||||++-.++-
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 44567777888 4777888888999999999999999999999877653
No 195
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.50 E-value=0.00016 Score=72.34 Aligned_cols=102 Identities=20% Similarity=0.350 Sum_probs=64.2
Q ss_pred HHHHHHHHHHH------hcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHH--HHHHHHHhCCcc
Q 010422 16 ASVEKRLVEEV------RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV--AKRVAEESGVEL 87 (511)
Q Consensus 16 ~~~q~~~~~~l------~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~--~~~~~~~~~~~~ 87 (511)
.+-|++++..+ .++.++.|.||-|+|||+++-.+..... ..+..++++.|+..+|..+ ...+...++..+
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~--~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR--SRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc--cccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 45577777777 7889999999999999988766554322 2355788999999988776 444555555433
Q ss_pred CCeeeEEEeecccCChhhhHHHHhhCcCCCCCCchhHhhhh
Q 010422 88 GQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 88 ~~~vg~~~~~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H 128 (511)
+..- ............ ...+.+.+++|+||+-
T Consensus 81 ~~~~----~~~~~~~~~~~~-----~~~l~~~~~lIiDEis 112 (364)
T PF05970_consen 81 NNNE----KSQCKISKNSRL-----RERLRKADVLIIDEIS 112 (364)
T ss_pred cccc----cccccccccchh-----hhhhhhheeeeccccc
Confidence 2210 000001111111 1246678999999984
No 196
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.49 E-value=0.00025 Score=74.96 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhc---cccCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA---GFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~---~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
+.|++++.....++.++|+|+.||||||.+..++... ....++.++.++.|+.-++....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 6788899999999999999999999998776554321 1111124688999998888776665443
No 197
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.47 E-value=0.017 Score=64.56 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=45.4
Q ss_pred ccCCCHHHHHHHHHHHhc-CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHH
Q 010422 11 KSLPIASVEKRLVEEVRK-NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 76 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~-~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~ 76 (511)
..+.+.+-|++++..+.. ++.++|+|+.|+||||++-.+. +. +...+..++.+.|+..++....
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~-~~-~e~~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAR-EA-WEAAGYEVRGAALSGIAAENLE 407 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH-HH-HHHcCCeEEEecCcHHHHHHHh
Confidence 346688899999998877 4578899999999998764332 21 2223556888889887765443
No 198
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.47 E-value=0.00082 Score=68.40 Aligned_cols=88 Identities=25% Similarity=0.322 Sum_probs=47.7
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhcc-ccCCCeEE-EEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAG-FCRDGKLI-GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~-~~~~~~~i-~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (511)
.+++++++||||+||||.+..++.... ...+.... +-.-|.+..+..+........+..+ . .. ....
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------~----~~-~~~~ 288 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------E----VV-YDPK 288 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------E----cc-CCHH
Confidence 467899999999999988776655433 22222222 3333556555544444444444221 0 00 1112
Q ss_pred hHHHHhhCcCCCCCCchhHhhhh
Q 010422 106 RIKEALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 106 ~i~~~l~~~~l~~~~~iIiDE~H 128 (511)
.+...+. .+.++++|+||.+.
T Consensus 289 ~l~~~l~--~~~~~DlVlIDt~G 309 (424)
T PRK05703 289 ELAKALE--QLRDCDVILIDTAG 309 (424)
T ss_pred hHHHHHH--HhCCCCEEEEeCCC
Confidence 2222222 23468999999974
No 199
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.46 E-value=0.00079 Score=71.44 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcc--ccCCCeEEEEeCccHHHHHHHHHHHH
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG--FCRDGKLIGVTQPRRVAAVTVAKRVA 80 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~--~~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (511)
.+.|++++.....++.++|+|++|+||||++..++.... .......+.++.|+.-++....+.+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 368999998888999999999999999988765543321 11123578889999988877776654
No 200
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=1e-05 Score=75.67 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=40.0
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.++-+....++...|.+|+.+.+.||+||||||++-.+.
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHh
Confidence 55677778888877777888899999999999999999999886654
No 201
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.46 E-value=1.6e-06 Score=78.03 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=79.6
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (511)
++++++.+....|...++.+.+...+.+|+.+.+.|+||+||||++-.+.-..... ...+.+- .+.+.
T Consensus 1 ~~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~--~G~I~~~----------G~dit 68 (237)
T COG0410 1 APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR--SGRIIFD----------GEDIT 68 (237)
T ss_pred CCceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEEC----------CeecC
Confidence 35666777777888888888899999999999999999999999885443222111 1122221 11111
Q ss_pred HHh-CCccCCeeeEEEeecccCChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCC
Q 010422 81 EES-GVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (511)
Q Consensus 81 ~~~-~~~~~~~vg~~~~~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 159 (511)
... .......++|.++....++..+.-++++.......- ++... .+.+....++-++..++.+.+..+|+++
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-----~~~~~--~~~e~v~~lFP~Lker~~~~aG~LSGGE 141 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-----KEAQE--RDLEEVYELFPRLKERRNQRAGTLSGGE 141 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-----ccccc--ccHHHHHHHChhHHHHhcCcccCCChHH
Confidence 110 011224577888877777777776665543221110 11111 1123334555555556655566666553
No 202
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=2.3e-06 Score=76.29 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEe
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIR 96 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~ 96 (511)
+..+.+...+.+|+.+.|.||+||||||++-.+.-..... .| .+.+-- .... .... .....++|..+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G-~i~~~g-~~~~--~~~~--------~~~~~i~~~~q 80 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SG-EIKVLG-KDIK--KEPE--------EVKRRIGYLPE 80 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-Ce-EEEECC-EEcc--cchH--------hhhccEEEEec
Confidence 3455566677899999999999999999886654332211 12 232211 0000 0000 11134556554
Q ss_pred ecccC-----------ChhhhHHHHhhCcCCCCCCchhHhhh--hhhhhhhHHHHHHHHHH
Q 010422 97 FDDRT-----------STSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (511)
Q Consensus 97 ~~~~~-----------~~~~~i~~~l~~~~l~~~~~iIiDE~--H~r~~~~~~ll~~l~~~ 144 (511)
..... +...+.+..+......+.+++++||- +......+.+..+++++
T Consensus 81 ~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 81 EPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred CCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 32222 22222223344455667899999993 33344445555666554
No 203
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=1.3e-06 Score=77.73 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+.+...+.+|+.+.|.||+||||||++-.+.-.
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 44555566789999999999999999988666543
No 204
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.44 E-value=1.3e-05 Score=71.38 Aligned_cols=115 Identities=20% Similarity=0.244 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEee
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF 97 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~ 97 (511)
..+.+...+.+|+.+.|.||+||||||++-.+.-..... .| .+.+ ..... ........ ...++|..+.
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G-~i~~-~g~~~-~~~~~~~~--------~~~i~~~~q~ 84 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SG-RVRL-DGADI-SQWDPNEL--------GDHVGYLPQD 84 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CC-eEEE-CCEEc-ccCCHHHH--------HhheEEECCC
Confidence 445555667899999999999999999887665432221 12 2322 11110 00000001 1123444332
Q ss_pred ccc---------CChhhhHHHHhhCcCCCCCCchhHhh--hhhhhhhhHHHHHHHHHH
Q 010422 98 DDR---------TSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKV 144 (511)
Q Consensus 98 ~~~---------~~~~~~i~~~l~~~~l~~~~~iIiDE--~H~r~~~~~~ll~~l~~~ 144 (511)
... .+...+.+..+....+.+.+++++|| .+........+..+++++
T Consensus 85 ~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 85 DELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL 142 (173)
T ss_pred CccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH
Confidence 111 23333344444555677889999999 333444455556666554
No 205
>PRK06526 transposase; Provisional
Probab=97.43 E-value=0.00016 Score=68.23 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=22.0
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+..+++++++||+|+|||+++..+...
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 3567789999999999999777655443
No 206
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.41 E-value=0.00085 Score=73.06 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=48.3
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHH
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 76 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~ 76 (511)
..+.+.+-|++++..+..++.++|+|+.||||||++-.++.......+...++++.|+.-++..+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH
Confidence 346678899999999999999999999999999887555432211111146778889887776443
No 207
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.40 E-value=1.9e-06 Score=85.21 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=38.8
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+..+.|+-....+.+...+.+|+.+.+.||+||||||++-.+.-
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3555666777765556677777889999999999999999999877753
No 208
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.40 E-value=2.8e-06 Score=82.90 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=39.1
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+.++.|+-....+.+...+.+|+.+.+.||+||||||++-.+.-
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4556667777765556677888889999999999999999999877653
No 209
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=2.7e-06 Score=84.62 Aligned_cols=51 Identities=29% Similarity=0.370 Sum_probs=38.9
Q ss_pred CChhhHHHhhccC-CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l-~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|.++++.+.++.| .-....+.+...+.+|+.+.+.||+||||||++-.+.-
T Consensus 1 m~~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred CCEEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 4455666777777 34445566777788999999999999999999877753
No 210
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.32 E-value=1.8e-05 Score=70.86 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+.+...+.+|+.+.|.||+||||||++-.+.-.
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44556667789999999999999999988666543
No 211
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.00067 Score=66.69 Aligned_cols=91 Identities=24% Similarity=0.301 Sum_probs=48.4
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 106 (511)
..+++++++||||+||||.+..+.........+..++-.-|.|..+..+.+..++..+..+ .. . .....
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------~~--~---~dp~d 272 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------IV--A---TSPAE 272 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE------Ee--c---CCHHH
Confidence 4578899999999999988776665432221122233334666655444444444333211 10 0 11222
Q ss_pred HHHHhhC-cCCCCCCchhHhhhh
Q 010422 107 IKEALLD-PYLSRYSAIIVDEAH 128 (511)
Q Consensus 107 i~~~l~~-~~l~~~~~iIiDE~H 128 (511)
+...+.. ....++++|+||=+-
T Consensus 273 L~~al~~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 273 LEEAVQYMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHHHHHHHhcCCCCEEEEECCC
Confidence 2322221 123468999999874
No 212
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.30 E-value=0.02 Score=69.03 Aligned_cols=238 Identities=16% Similarity=0.183 Sum_probs=120.0
Q ss_pred cCCCHHHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 12 SLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
.+++.+-|.+++..+..+ +..+|+|+.|+||||++-.+..- +...+..+..+.|+..++....+...... ..+..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~--~~~~G~~V~~lAPTgrAA~~L~e~~g~~A-~Ti~~ 503 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHL--ASEQGYEIQIITAGSLSAQELRQKIPRLA-STFIT 503 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHH--HHhcCCeEEEEeCCHHHHHHHHHHhcchh-hhHHH
Confidence 456778899999887654 79999999999999887655422 12235678888899877766554321100 00000
Q ss_pred eeeEEEeecccCChhhhHHHHh-hCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhh
Q 010422 90 RVGYSIRFDDRTSTSTRIKEAL-LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMI 168 (511)
Q Consensus 90 ~vg~~~~~~~~~~~~~~i~~~l-~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 168 (511)
..+.... . .....+..++ .+..+..-+++||||+. .+.+..+..+++....
T Consensus 504 ~l~~l~~--~--~~~~tv~~fl~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~---------------------- 555 (1960)
T TIGR02760 504 WVKNLFN--D--DQDHTVQGLLDKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ---------------------- 555 (1960)
T ss_pred HHHhhcc--c--ccchhHHHhhcccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh----------------------
Confidence 0000000 0 0000111111 11224567899999996 3444445555543322
Q ss_pred hccCCCCCCccccccccccCCCCccEEEeccCC--C----HHHHHhhh-CCCCeEEeCCcc-ccccEEEcCCCCCchHHH
Q 010422 169 LDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--D----ARGFSEYF-GCAKAVHVQGRQ-FPVEILYTLYPEPDYLDA 240 (511)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~----~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (511)
.+.|+|++-=+- . -..|.... ++.+........ ....+........+....
T Consensus 556 ---------------------~garvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v~i~~~~~~~r~~~ 614 (1960)
T TIGR02760 556 ---------------------HNSKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEISEAVDKLRVDY 614 (1960)
T ss_pred ---------------------cCCEEEEEcChhhcCccccchHHHHHHHCCCcEEEeecccccCcceeeeccCchHHHHH
Confidence 345666554332 1 11222111 123333322211 111111222222222333
Q ss_pred HHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCC-CCCeEEEEcc-CCCCHHHHH
Q 010422 241 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA-SRKLVTVPIF-SSLPSEQQM 303 (511)
Q Consensus 241 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~-~~~~~v~~lh-~~l~~~~r~ 303 (511)
+...+..+.. .+..++|+.++.++...+...++..+..-..- .....+..+. ..++..++.
T Consensus 615 ia~~y~~L~~--~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r 677 (1960)
T TIGR02760 615 IASAWLDLTP--DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRR 677 (1960)
T ss_pred HHHHHHhccc--ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHh
Confidence 4444443332 35569999999999999999999887321111 1133333333 356666665
No 213
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.28 E-value=0.042 Score=61.93 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=66.9
Q ss_pred cCCCHHHHHHHHHHHh-cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 12 SLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~-~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
.+.+.+-|.+++..+. .++..+|+|+.|+||||++-.+... +...+..++.+.|+..++....+ ..+.. ..+
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~--~e~~G~~V~g~ApTgkAA~~L~e----~~Gi~-a~T 451 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREA--WEAAGYRVVGGALAGKAAEGLEK----EAGIQ-SRT 451 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEcCcHHHHHHHHH----hhCCC-eee
Confidence 4678889999998874 5778999999999999887655321 12235567788888777655433 22321 111
Q ss_pred eeEEEeecccCChhhhH-HHH-hhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHH
Q 010422 91 VGYSIRFDDRTSTSTRI-KEA-LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (511)
Q Consensus 91 vg~~~~~~~~~~~~~~i-~~~-l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~ 144 (511)
+. .+ ..+ .....+..-+++||||+. .+.+..+..+++..
T Consensus 452 Ia-------------s~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~ 492 (1102)
T PRK13826 452 LS-------------SWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAV 492 (1102)
T ss_pred HH-------------HHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHH
Confidence 10 00 000 011235556799999997 34444444555444
No 214
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=2.2e-06 Score=76.85 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC-ccHHHHHHHHHHHHHHhCCccCCeeeEEEe
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PRRVAAVTVAKRVAEESGVELGQRVGYSIR 96 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~ 96 (511)
..+.+...+.+|+.+.|.||+||||||++-.+.-..... .| .+.+-- +.... .+..... ...++|..+
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G-~i~~~g~~~~~~-~~~~~~~--------~~~i~~~~q 83 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SG-SILIDGEDLTDL-EDELPPL--------RRRIGMVFQ 83 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ce-EEEECCEEcccc-chhHHHH--------hhcEEEEec
Confidence 445555667899999999999999999886665332211 12 233211 00000 0000000 122344333
Q ss_pred eccc-------------CChhhhHHHHhhCcCCCCCCchhHhh--hhhhhhhhHHHHHHHHHHHHh
Q 010422 97 FDDR-------------TSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQNA 147 (511)
Q Consensus 97 ~~~~-------------~~~~~~i~~~l~~~~l~~~~~iIiDE--~H~r~~~~~~ll~~l~~~~~~ 147 (511)
.... .+...+.+..+....+.+.+++++|| .+........+..+++++...
T Consensus 84 ~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~ 149 (178)
T cd03229 84 DFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149 (178)
T ss_pred CCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 2111 23333333444455677889999999 334445556677777766543
No 215
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0018 Score=65.27 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=49.9
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhccccCC--CeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRD--GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~--~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 104 (511)
..|+.+.++||||+||||++..+........+ +..++.....+....++...+.+..+.... . ....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~----------~-v~~~ 257 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR----------S-IKDI 257 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee----------c-CCCH
Confidence 45788999999999999988766543222211 223444455566666666556655543211 0 0111
Q ss_pred hhHHHHhhCcCCCCCCchhHhhh
Q 010422 105 TRIKEALLDPYLSRYSAIIVDEA 127 (511)
Q Consensus 105 ~~i~~~l~~~~l~~~~~iIiDE~ 127 (511)
......+. .+.+.+.++||.+
T Consensus 258 ~dl~~al~--~l~~~d~VLIDTa 278 (420)
T PRK14721 258 ADLQLMLH--ELRGKHMVLIDTV 278 (420)
T ss_pred HHHHHHHH--HhcCCCEEEecCC
Confidence 11122221 3567889999986
No 216
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.25 E-value=5.3e-06 Score=76.88 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=32.6
Q ss_pred HHhhccCCC--HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 7 LQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 7 ~~~~~~l~~--~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+..++. .++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 ~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 5 EQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred EEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344444532 234556666788999999999999999998876653
No 217
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.23 E-value=0.00046 Score=68.91 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=51.0
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHHH
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 109 (511)
+.++|.|..|||||.++..++........+..++++.+...+.....+.+...... . ..............
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---~------~~~~~~~~~~~~i~ 72 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP---K------LKKSDFRKPTSFIN 72 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc---c------hhhhhhhhhHHHHh
Confidence 46899999999999776655555422223445566667776766666555443300 0 00111111111111
Q ss_pred H--hhCcCCCCCCchhHhhhhhh
Q 010422 110 A--LLDPYLSRYSAIIVDEAHER 130 (511)
Q Consensus 110 ~--l~~~~l~~~~~iIiDE~H~r 130 (511)
. ........++++|+||||..
T Consensus 73 ~~~~~~~~~~~~DviivDEAqrl 95 (352)
T PF09848_consen 73 NYSESDKEKNKYDVIIVDEAQRL 95 (352)
T ss_pred hcccccccCCcCCEEEEehhHhh
Confidence 1 12234567999999999953
No 218
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.23 E-value=0.002 Score=62.98 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=47.9
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEe--CccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~--~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (511)
+++.++++||||+||||.+..+....... +.++.++ -+.+..+..+........+ +++........+. .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D~~r~~a~eql~~~a~~~~------i~~~~~~~~~dpa-~ 183 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGDTFRAAAIEQLQVWGERVG------VPVIAQKEGADPA-S 183 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecCccchhhHHHHHHHHHHcC------ceEEEeCCCCCHH-H
Confidence 35688999999999998876665443322 2333333 3445554444444444333 2333221121111 1
Q ss_pred hHHHHhhCcCCCCCCchhHhhhh
Q 010422 106 RIKEALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 106 ~i~~~l~~~~l~~~~~iIiDE~H 128 (511)
.....+......+++++|||=+.
T Consensus 184 ~v~~~l~~~~~~~~D~ViIDTaG 206 (318)
T PRK10416 184 VAFDAIQAAKARGIDVLIIDTAG 206 (318)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCC
Confidence 11122222234678999999875
No 219
>PRK08181 transposase; Validated
Probab=97.22 E-value=0.002 Score=61.27 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=26.9
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
.+.++++++++||+|+|||.++..+..... . .+..++++.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~-~g~~v~f~~ 141 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALI-E-NGWRVLFTR 141 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHH-H-cCCceeeee
Confidence 456889999999999999977655543322 1 234455554
No 220
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.21 E-value=0.00038 Score=67.83 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=27.3
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh---hccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF---HAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~---~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
..+..++.-..|+|||..+..++. ..........++++.|...+ .+....+.+..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~-~~W~~E~~~~~ 81 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLL-SQWKEEIEKWF 81 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTH-HHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchh-hhhhhhhcccc
Confidence 456788888999999955544443 22211112246677777444 45555566665
No 221
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.21 E-value=0.014 Score=65.61 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=38.2
Q ss_pred CCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCC
Q 010422 309 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (511)
Q Consensus 309 f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~ 377 (511)
.++...++||-+|.+=+|+|-|...... .| .|.---..+|-.-|+.|.-+
T Consensus 589 ~~~d~~kilIV~dmlLTGFDaP~L~TmY---------vD----------K~Lk~H~L~QAisRtNR~~~ 638 (962)
T COG0610 589 LKDDPLDLLIVVDMLLTGFDAPCLNTLY---------VD----------KPLKYHNLIQAISRTNRVFP 638 (962)
T ss_pred CcCCCCCEEEEEccccccCCccccceEE---------ec----------cccccchHHHHHHHhccCCC
Confidence 4667899999999999999999887765 34 23333457888888888753
No 222
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.20 E-value=0.0006 Score=58.59 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeec
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD 98 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~ 98 (511)
.+.+...+..|+.+.|.||+||||||++-.+.-..... ...+.+- - ...++|..+
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~-~--------------------~~~i~~~~~-- 70 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWG-S--------------------TVKIGYFEQ-- 70 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEEC-C--------------------eEEEEEEcc--
Confidence 34444567899999999999999999886654332111 2223221 1 024566544
Q ss_pred ccCChhhhHHHHhhCcCCCCCCchhHhhh--hhhhhhhHHHHHHHHH
Q 010422 99 DRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKK 143 (511)
Q Consensus 99 ~~~~~~~~i~~~l~~~~l~~~~~iIiDE~--H~r~~~~~~ll~~l~~ 143 (511)
.+...+.+..+......+.+++++||- +......+.+..++++
T Consensus 71 --lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 71 --LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 555555555555566778899999993 3333344455555554
No 223
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=4.2e-05 Score=66.97 Aligned_cols=109 Identities=24% Similarity=0.303 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeec
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD 98 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~ 98 (511)
.+.+...+.+|+.+.|.||+||||||++-.+.-.... ....+.+-. ..... ....+ ....++|..+
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~-~~~~~-~~~~~--------~~~~i~~~~q-- 80 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDG-KDIAK-LPLEE--------LRRRIGYVPQ-- 80 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECC-EEccc-CCHHH--------HHhceEEEee--
Confidence 3444455779999999999999999888666433221 122232211 11000 00000 1133556554
Q ss_pred ccCChhhhHHHHhhCcCCCCCCchhHhhhh--hhhhhhHHHHHHHHH
Q 010422 99 DRTSTSTRIKEALLDPYLSRYSAIIVDEAH--ERTVHTDVLLGLLKK 143 (511)
Q Consensus 99 ~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H--~r~~~~~~ll~~l~~ 143 (511)
.+...+.+..+......+.+++++||.- ........+...+++
T Consensus 81 --lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 81 --LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 4444444433444455568899999943 223333444444443
No 224
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.00029 Score=59.77 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
+..+++.||+||||||++..++....... ..++++.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEE
Confidence 57899999999999988877765544321 1344555443
No 225
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0019 Score=66.28 Aligned_cols=91 Identities=18% Similarity=0.323 Sum_probs=47.5
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEe--CccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCCh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 103 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~--~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 103 (511)
+.+|++++++||||+||||++..+.........+..+.++ -+.+..+..+.+......+ ...... ..
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLg--------v~v~~a---~d 415 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG--------IAVHEA---DS 415 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccC--------ceeEec---Cc
Confidence 4568899999999999998886665443222222233333 3445444333332222211 111111 11
Q ss_pred hhhHHHHhhCcCCCCCCchhHhhhhh
Q 010422 104 STRIKEALLDPYLSRYSAIIVDEAHE 129 (511)
Q Consensus 104 ~~~i~~~l~~~~l~~~~~iIiDE~H~ 129 (511)
...+...+. .+.++++|+||.+-.
T Consensus 416 ~~~L~~aL~--~l~~~DLVLIDTaG~ 439 (559)
T PRK12727 416 AESLLDLLE--RLRDYKLVLIDTAGM 439 (559)
T ss_pred HHHHHHHHH--HhccCCEEEecCCCc
Confidence 122233332 235689999999853
No 226
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.18 E-value=0.0014 Score=62.93 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=20.8
Q ss_pred HhcCC-EEEEEcCCCCchhchHHHHHhh
Q 010422 26 VRKND-ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 26 l~~~~-~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..+. .++++||+|+||||++-.+...
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 34444 7899999999999988766544
No 227
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.17 E-value=0.00016 Score=63.83 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecc--ccccCCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN--IAETSVTIP 330 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~--~~~~Gvdip 330 (511)
.+|.+|||+||.+..+.+.+.+.+.... .++.+.. . ...++..+++.|+++.-.|++|+. .+..|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3699999999999999998887653210 0222322 1 245678888999999999999999 999999999
Q ss_pred C--eEEEEeCCcccceeecCC-------------CCcccceeeecCHHHHHHhccccCCCCCCeEEEe
Q 010422 331 G--IKYVIDPGFVKARLYDPV-------------KGMESLLVVPISKAQALQRSGRAGREGPGKCFRL 383 (511)
Q Consensus 331 ~--v~~VI~~g~~~~~~yd~~-------------~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l 383 (511)
+ .+.||-.|+.--...|+. .+... ...|.......|-+||+=|.....+..+
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRD-WYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHH-HTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhh-HhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 6 667776665321111111 00110 1123445568899999999885443333
No 228
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.17 E-value=0.001 Score=59.13 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=57.9
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCCh
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 103 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 103 (511)
..+.+|+.+.|.||+||||||++-.+.-..... ...+.+-- ..++|..+... .+.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g----------------------~~i~~~~q~~~-LSg 74 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDG----------------------ITPVYKPQYID-LSG 74 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECC----------------------EEEEEEcccCC-CCH
Confidence 467899999999999999999986554322111 12222211 12455544222 555
Q ss_pred hhhHHHHhhCcCCCCCCchhHhhh--hhhhhhhHHHHHHHHHHH
Q 010422 104 STRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQ 145 (511)
Q Consensus 104 ~~~i~~~l~~~~l~~~~~iIiDE~--H~r~~~~~~ll~~l~~~~ 145 (511)
..+.+..+....+.+.+++++||- +........+..++++..
T Consensus 75 Gq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 75 GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 555555555566677899999994 333344455566666554
No 229
>PRK10536 hypothetical protein; Provisional
Probab=97.16 E-value=0.00087 Score=62.42 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
-|....|...+.++.+++.+++.||+|||||+++..+..+......-.+++++.|.-
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 456778999999999999999999999999988777666544333345677777764
No 230
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=97.15 E-value=0.00039 Score=66.02 Aligned_cols=132 Identities=18% Similarity=0.235 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeE----EEEeCccHHHHHHHHHHH----HHHhCC-
Q 010422 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL----IGVTQPRRVAAVTVAKRV----AEESGV- 85 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~----i~~~~p~~~l~~~~~~~~----~~~~~~- 85 (511)
-++....++.-...|+-++++|||||||||.+.-+.++...+ |.. .+-++-.+.+.....+.. .+....
T Consensus 259 RFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q--GVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y 336 (514)
T KOG2373|consen 259 RFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ--GVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSY 336 (514)
T ss_pred hhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhh--hhhheeeeeecchHHHHHHHHHHHccCchHhhhhhh
Confidence 456677777777889999999999999999988777665432 221 222333444332222110 000000
Q ss_pred -----ccCCeeeEEEeecccCChhhhHHHHhhCcCCCCCCchhHhhhhh----------hhhhhHHHHHHHHHHHHhh
Q 010422 86 -----ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHE----------RTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 86 -----~~~~~vg~~~~~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~----------r~~~~~~ll~~l~~~~~~~ 148 (511)
.....--|-+.+++...-...|..+.......++.++|||..+- |-...|.+++..++.....
T Consensus 337 ~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR~fAT~n 414 (514)
T KOG2373|consen 337 KHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFRQFATQN 414 (514)
T ss_pred hHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchhhhHHHHHHHHHHHhhcc
Confidence 00011112223333333344444444444566788999998652 3344577777777776543
No 231
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.15 E-value=9.1e-06 Score=74.81 Aligned_cols=42 Identities=29% Similarity=0.353 Sum_probs=31.2
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 7 ~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 7 TKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 334443345555666778999999999999999999877653
No 232
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.13 E-value=0.00055 Score=61.93 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
|.+..|+.++.++.+.+.+++.||.|||||+++....++......-.+++++.|.-
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 56778999999999999999999999999988777776665554445677777654
No 233
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.13 E-value=1.5e-05 Score=72.48 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+..+.+...+.+|+.+.|.||+||||||++-.+.-.
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3466777778899999999999999999988766543
No 234
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.00033 Score=73.19 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=36.3
Q ss_pred HHHhhccCCCH---HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 6 ILQQRKSLPIA---SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 6 ~~~~~~~l~~~---~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+....||.+ ++.+++...+..|+++.++||.||||||++.++.
T Consensus 468 F~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~ 515 (716)
T KOG0058|consen 468 FEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL 515 (716)
T ss_pred EEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34455566654 5788999999999999999999999999986655
No 235
>PRK04296 thymidine kinase; Provisional
Probab=97.12 E-value=0.00039 Score=62.85 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCc
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p 67 (511)
|...+++||+|+||||.+...+.+.... +.+++++.|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 5678999999999999888777665433 445666544
No 236
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.11 E-value=0.00075 Score=59.57 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC------CeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD------GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~------~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
..+.+...+.+|+.+.|.||+||||||++-.+.-......+ ...+.++++..... ...+.+.... .
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~---~~tv~~nl~~--~--- 87 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP---LGTLREQLIY--P--- 87 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc---cccHHHHhhc--c---
Confidence 44556667889999999999999999988766543222211 11233333222110 0011111100 0
Q ss_pred eEEEeecccCChhhhHHHHhhCcCCCCCCchhHhh--hhhhhhhhHHHHHHHHH
Q 010422 92 GYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKK 143 (511)
Q Consensus 92 g~~~~~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE--~H~r~~~~~~ll~~l~~ 143 (511)
.....+...+.+..+....+.+.+++++|| .+........+..++++
T Consensus 88 -----~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 88 -----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 123344445545555555677889999999 33333444445555544
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.11 E-value=0.0042 Score=58.14 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=48.9
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHHH
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 109 (511)
..+++.|++|+|||+++..+..... . .+..++++. ...+ ...+..... ..... ...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~-~-~g~~v~~it-~~~l----~~~l~~~~~-------------~~~~~-~~~~l~ 158 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL-L-RGKSVLIIT-VADI----MSAMKDTFS-------------NSETS-EEQLLN 158 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-h-cCCeEEEEE-HHHH----HHHHHHHHh-------------hcccc-HHHHHH
Confidence 4789999999999977655544332 2 234455553 2222 222211110 00001 111111
Q ss_pred HhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 110 ALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 110 ~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
.+.+++++||||++... .+++-..++..++..|
T Consensus 159 -----~l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~R 191 (244)
T PRK07952 159 -----DLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRR 191 (244)
T ss_pred -----HhccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHH
Confidence 14578999999998654 4555555666666655
No 238
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.10 E-value=0.0038 Score=68.05 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=93.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe--EEEEeccccccCCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR--KVILATNIAETSVTIP 330 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~--~vlvaT~~~~~Gvdip 330 (511)
.+..+|||..=.+..+-+...|... ++.-..+.|....++|...++.|..+.+ ..|++|-.-..|||+-
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyH---------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLt 1345 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYH---------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLT 1345 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhc---------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccc
Confidence 4788999998777777777777665 7888889999999999999999987653 6799999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHhh
Q 010422 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK 391 (511)
Q Consensus 331 ~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 391 (511)
+.+.||- ||..++ |.--+.+.-|+-|.|+...=+.|+|+++...+.
T Consensus 1346 gADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1346 GADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred cCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 9999997 887664 344455667778888888889999998776543
No 239
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.10 E-value=2.4e-05 Score=67.45 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=34.5
Q ss_pred CChhhHHHhhccCCCHH-----HHHHH----HHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIAS-----VEKRL----VEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~-----~q~~~----~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|+.++..+..+.|.... .|.++ ...+.+++.+.++|.+||||||++-.+.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMla 60 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHh
Confidence 45677777777765321 22333 3345789999999999999999985543
No 240
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.10 E-value=0.0021 Score=65.85 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=38.1
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEE--EEeCccHHHHHHHHHHHHHHhCC
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI--GVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i--~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
.+|++++++||||+||||.+..+........++.++ +-.-+.+..+.++.+.+.+..+.
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 356789999999999998887776544333222223 33345666776666666666553
No 241
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.10 E-value=6.2e-06 Score=81.39 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=34.7
Q ss_pred hHHHhhccCCC----HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 5 KILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 5 ~~~~~~~~l~~----~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+.++.|+. .+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 3 ~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 3 KLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred EEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34455555541 235667777789999999999999999999876653
No 242
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0028 Score=68.13 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=50.5
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC--ccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~--p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (511)
.++++.++||||+||||.+..+........++.++.++. +.|..+..+.+.+.+..+..+. +. . ...
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~--------~-~~~ 252 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AV--------K-DAA 252 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--cc--------C-CHH
Confidence 367899999999999988877665432232323443333 4565565555556665554221 10 0 122
Q ss_pred hHHHHhhCcCCCCCCchhHhhhh
Q 010422 106 RIKEALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 106 ~i~~~l~~~~l~~~~~iIiDE~H 128 (511)
.+...+. .+.+.++|+||=+-
T Consensus 253 ~l~~al~--~~~~~D~VLIDTAG 273 (767)
T PRK14723 253 DLRFALA--ALGDKHLVLIDTVG 273 (767)
T ss_pred HHHHHHH--HhcCCCEEEEeCCC
Confidence 2333332 34567899999875
No 243
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.09 E-value=0.00083 Score=59.68 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc---cC-----CCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF---CR-----DGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~---~~-----~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
+.+...+.+|+.+.|.||+||||||++-..+...+. .. ....+.++.. .+ +.+..+.. ..
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~-~l~~~~L~--~~- 79 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQ-FLIDVGLG--YL- 79 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HH-HHHHcCCC--cc-
Confidence 344556789999999999999999998765422110 00 0001222211 11 12222211 00
Q ss_pred eEEEeecccCChhhhHHHHhhCcCCCC--CCchhHhhh--hhhhhhhHHHHHHHHHH
Q 010422 92 GYSIRFDDRTSTSTRIKEALLDPYLSR--YSAIIVDEA--HERTVHTDVLLGLLKKV 144 (511)
Q Consensus 92 g~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~iIiDE~--H~r~~~~~~ll~~l~~~ 144 (511)
.........+...+.+..+....+.+ .+++++||. +........+...++++
T Consensus 80 -~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 80 -TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred -ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 01111233444455554555556677 899999993 33344455556666554
No 244
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.07 E-value=0.00074 Score=58.62 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.1
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+..|+.+.|.||+||||||++.++.-.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhc
Confidence 4678999999999999999998777643
No 245
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=1.7e-05 Score=74.37 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=35.2
Q ss_pred hHHHhhccCCC-----HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 5 KILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 5 ~~~~~~~~l~~-----~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+..+.|+- ...++++...+.+|+.+.|+|..|+||||++-.+=
T Consensus 3 ~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN 53 (339)
T COG1135 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN 53 (339)
T ss_pred EEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Confidence 34444555553 45677888899999999999999999999986553
No 246
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.03 E-value=2.3e-05 Score=83.02 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+++...+.+|+.+.|+||+||||||++-.++-
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5566677788999999999999999999876653
No 247
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0035 Score=62.76 Aligned_cols=56 Identities=30% Similarity=0.379 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCC-eEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDG-KLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~-~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
+..++++|||||||||++..++.......+. ..++-.-+.|..+..+.++.+...+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lg 279 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMG 279 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcC
Confidence 4578899999999999988887644322222 2233344667766666665555444
No 248
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=9.5e-06 Score=80.53 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=33.4
Q ss_pred hHHHhhccCC----CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 5 KILQQRKSLP----IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 5 ~~~~~~~~l~----~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+.++.|+ -.+..+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 3 ~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~ 52 (343)
T PRK11153 3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN 52 (343)
T ss_pred EEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3444555554 123455666778899999999999999999987665
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.99 E-value=0.0051 Score=53.65 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=23.3
Q ss_pred EEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCc
Q 010422 32 LIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (511)
Q Consensus 32 ~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p 67 (511)
++|.||+|+|||+++..++..... .+..+++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEEC
Confidence 689999999999888777665533 2334444443
No 250
>PF13173 AAA_14: AAA domain
Probab=96.98 E-value=0.0025 Score=53.52 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=22.6
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhcc
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAG 54 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~ 54 (511)
+++.++|.||.|+||||++-+++....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999988876543
No 251
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.98 E-value=0.0063 Score=57.85 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++.++++||+|+||||++..+...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 478999999999999887666544
No 252
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.97 E-value=9.2e-06 Score=81.24 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=35.6
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.++.++-....+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~Ia 61 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA 61 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 344555566665444455666678899999999999999999987665
No 253
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.95 E-value=4.1e-05 Score=71.03 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=72.9
Q ss_pred hhhHHHhhccCCCH---------HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHH---
Q 010422 3 RQKILQQRKSLPIA---------SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV--- 70 (511)
Q Consensus 3 ~~~~~~~~~~l~~~---------~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~--- 70 (511)
++++.+..+.|+.. ....++...+.+|+++.++|++||||||+.-.++.-.... ...+++-- ...
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g-~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEG-KDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcC-cchhhc
Confidence 34445555555542 2345567778899999999999999999886665433222 22233321 100
Q ss_pred HHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHHHHhhCcCCCCCCchhHhhhhh--hhhhhHHHHHHHHHHHHh
Q 010422 71 AAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHE--RTVHTDVLLGLLKKVQNA 147 (511)
Q Consensus 71 l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~--r~~~~~~ll~~l~~~~~~ 147 (511)
......+++.+.. ..+|..-.+..++....+...+..-.++....-+.+++|.||.-. ...-....+.+++++...
T Consensus 81 ~~~~~~~~v~elL-~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 81 SKEERRERVLELL-EKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE 158 (268)
T ss_pred chhHHHHHHHHHH-HHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence 0111111222211 112211112334556666666655555555566788999999531 111223445555555443
No 254
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.93 E-value=0.00043 Score=62.18 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+.+...+.+|+.+.|.||+||||||++-.+.-.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34455566789999999999999999988666533
No 255
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.92 E-value=5.5e-05 Score=68.81 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=38.8
Q ss_pred ChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchH
Q 010422 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQL 46 (511)
Q Consensus 2 ~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~ 46 (511)
++++..+.++.|......+++...+.+|+.+.++||+|+||||++
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlf 47 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLF 47 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeee
Confidence 345566778888887778888889999999999999999999998
No 256
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.92 E-value=2.5e-05 Score=76.28 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 344566678899999999999999999986665
No 257
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.92 E-value=0.0021 Score=68.91 Aligned_cols=66 Identities=26% Similarity=0.337 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHhcC-CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 14 PIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~-~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
.+.+.|.+++..+... ..++|.||+|+|||+.+..++...... +.+++++.|+..++....+++.+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~--g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR--GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEEcCcHHHHHHHHHHHHh
Confidence 3577899888887765 789999999999997776655543322 44789999999999998888765
No 258
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.89 E-value=0.00014 Score=65.30 Aligned_cols=128 Identities=22% Similarity=0.231 Sum_probs=66.5
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC-------ccH--HHHHHHHHHHHH
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-------PRR--VAAVTVAKRVAE 81 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~-------p~~--~l~~~~~~~~~~ 81 (511)
..++-....+.+...+.+|+.+.|.||+||||||++-.+.-..... .| .+.+-. +.. ..+..+.+ +.+
T Consensus 7 ~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G-~v~~~g~~~~~~~~~~~~~~i~~~~q-~l~ 83 (180)
T cd03214 7 VGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SG-EILLDGKDLASLSPKELARKIAYVPQ-ALE 83 (180)
T ss_pred EEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-Cc-EEEECCEECCcCCHHHHHHHHhHHHH-HHH
Confidence 3333333444555667899999999999999999886665432211 22 232211 100 00111111 122
Q ss_pred HhCCccCCeeeEEEeecccCChhhhHHHHhhCcCCCCCCchhHhh--hhhhhhhhHHHHHHHHHHHH
Q 010422 82 ESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (511)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE--~H~r~~~~~~ll~~l~~~~~ 146 (511)
..+.. . +........+...+.+..+....+.+.+++++|| .+......+.+..+++++..
T Consensus 84 ~~gl~--~---~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 84 LLGLA--H---LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred HcCCH--h---HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 22211 0 0011123344445545455555667789999999 44444555666677766544
No 259
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.85 E-value=0.0024 Score=61.53 Aligned_cols=87 Identities=26% Similarity=0.319 Sum_probs=47.0
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCC--CeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRD--GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~--~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 105 (511)
++++++++||||+||||.+..++.......+ +..++-.-|.+..+...........+..+. . .....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----------~-~~~~~ 261 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----------V-ARDPK 261 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----------c-cCCHH
Confidence 4568999999999999887766654433212 223333445565554444444444332210 0 01112
Q ss_pred hHHHHhhCcCCCCCCchhHhhh
Q 010422 106 RIKEALLDPYLSRYSAIIVDEA 127 (511)
Q Consensus 106 ~i~~~l~~~~l~~~~~iIiDE~ 127 (511)
.+...+. .+.++++|+||.+
T Consensus 262 ~l~~~l~--~~~~~d~vliDt~ 281 (282)
T TIGR03499 262 ELRKALD--RLRDKDLILIDTA 281 (282)
T ss_pred HHHHHHH--HccCCCEEEEeCC
Confidence 2333332 2356899999964
No 260
>PRK06893 DNA replication initiation factor; Validated
Probab=96.85 E-value=0.0039 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..+++.||+|+|||+++-.+..+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999777555443
No 261
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.84 E-value=0.0018 Score=63.27 Aligned_cols=28 Identities=39% Similarity=0.504 Sum_probs=23.1
Q ss_pred HHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 23 VEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
...+..+++++|+|||||||||++..++
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999885554
No 262
>PRK09183 transposase/IS protein; Provisional
Probab=96.83 E-value=0.0044 Score=58.87 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=27.4
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
+.++.++++.||+|+|||+++..+...... .+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 678899999999999999887766443222 244455553
No 263
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.83 E-value=0.0011 Score=47.13 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.|++++|+|||||||||++..+.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999885543
No 264
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.81 E-value=0.0022 Score=62.86 Aligned_cols=67 Identities=22% Similarity=0.217 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc--CCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
++-|.+++.. .++.++|.|+.|||||+.+..-+...... .+...++++.+++.++..+..++....+
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 4678888877 67789999999999997664433222111 1234688999999999999888876543
No 265
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.001 Score=59.36 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=72.0
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh-ccccCC--CeEEEEeCccHHHHHHHHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH-AGFCRD--GKLIGVTQPRRVAAVTVAKRVA 80 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~-~~~~~~--~~~i~~~~p~~~l~~~~~~~~~ 80 (511)
++..++...|.-++..+.+...+.+++++.++||+||||||++-.+=.- .....- ...+.+-- .. +....-.+
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g--~n-i~~~~~d~- 83 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG--KN-IYDPKVDV- 83 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC--ee-ccCCCCCH-
Confidence 4455666777778888899999999999999999999999987544221 111100 01122110 00 00000000
Q ss_pred HHhCCccCCeeeEEEeecccCChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHH
Q 010422 81 EESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (511)
Q Consensus 81 ~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~ 146 (511)
..+...+|..++-.+.++ .+-..++...+.+..+.--.+||+-|.+.....+..-++..++
T Consensus 84 ----~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~ 144 (253)
T COG1117 84 ----VELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH 144 (253)
T ss_pred ----HHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh
Confidence 012234666666444444 2323333333333333225778877777666666666665554
No 266
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.00038 Score=63.65 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=32.3
Q ss_pred HHhhccCCC----HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 7 LQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 7 ~~~~~~l~~----~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.++.||. ....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 7 ~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 7 RNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred EccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcc
Confidence 344455542 234455666688999999999999999998866543
No 267
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=2.1e-05 Score=78.78 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=35.1
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.++-....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 20 l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~Ia 66 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLA 66 (377)
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 44555666665444455666678899999999999999999886665
No 268
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.76 E-value=0.0065 Score=66.73 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=82.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-CeEE-EEeccccccCCCCCC
Q 010422 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKV-ILATNIAETSVTIPG 331 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~v-lvaT~~~~~Gvdip~ 331 (511)
+.++||||.=+...+-+.+-|.+. ..+.+.-..+.|+.++.+|.++.++|.++ .++| +++|.+-+-|+|+-+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 457999999998888887666543 22355566789999999999999999988 6766 667889999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCC---CeEEEecChhhH
Q 010422 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP---GKCFRLYPENEF 389 (511)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~---G~~~~l~~~~~~ 389 (511)
.+.||- ++..++ |. .=+|-.-||.|-|. =.+|+|+++...
T Consensus 1414 ADTVVF--------vEHDWN-------PM---rDLQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1414 ADTVVF--------VEHDWN-------PM---RDLQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred CceEEE--------EecCCC-------ch---hhHHHHHHHHhhcCceeeeeeeehhcccH
Confidence 999995 432221 22 23666666666663 457888877644
No 269
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.74 E-value=0.0029 Score=64.73 Aligned_cols=64 Identities=31% Similarity=0.379 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHhcC-CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~-~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (511)
..+.|++++...... .-.+|.||+|+|||+.+-.++.+.... +.+++++.|+..++....+++.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--CCeEEEEcCchHHHHHHHHHhc
Confidence 456788888877766 567889999999996655555544433 5689999999999988887643
No 270
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.73 E-value=0.0038 Score=60.58 Aligned_cols=52 Identities=27% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHH
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l 71 (511)
.-+...+..+++++|+|||||||||++..++.......+..+++++....++
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 3344556778899999999999999886655332211223456666654443
No 271
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=7.8e-05 Score=76.04 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=33.4
Q ss_pred HhhccCCCH-HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 8 QQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 8 ~~~~~l~~~-~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+....+|-- +.-.++...+..|+.+.++|++||||||++..++-
T Consensus 325 ~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G 369 (559)
T COG4988 325 NLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369 (559)
T ss_pred ceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 334444432 55667788889999999999999999999877663
No 272
>PRK08727 hypothetical protein; Validated
Probab=96.72 E-value=0.0059 Score=57.10 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
+.+++.||+|||||.++-.+.... .. .+..+.++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~-~~-~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA-EQ-AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HH-cCCcEEEEe
Confidence 458999999999997765544332 22 133455554
No 273
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.71 E-value=0.0098 Score=60.07 Aligned_cols=51 Identities=25% Similarity=0.323 Sum_probs=30.7
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEE--eCccHHHHHHHHHHHHHH
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV--TQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~--~~p~~~l~~~~~~~~~~~ 82 (511)
..++++|++||||||.+..+..... . .+.++.+ .-+.|..+..+.+..+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~-~G~kV~lV~~D~~R~aA~eQLk~~a~~ 153 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-R-KGFKPCLVCADTFRAGAFDQLKQNATK 153 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-H-CCCCEEEEcCcccchhHHHHHHHHhhc
Confidence 4678999999999988766654322 1 1323333 346676665555544443
No 274
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.71 E-value=4.4e-05 Score=75.89 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~G 41 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNR 41 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 44555678999999999999999999866653
No 275
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.71 E-value=0.015 Score=55.58 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=46.6
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEe--CccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~--~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 106 (511)
.+.++++||+|+||||.+..+..... . .+.++.++ -+.|..+....+.+....+. .+...... ......
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~-~-~g~~V~li~~D~~r~~a~~ql~~~~~~~~i------~~~~~~~~-~dp~~~ 142 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK-K-QGKSVLLAAGDTFRAAAIEQLEEWAKRLGV------DVIKQKEG-ADPAAV 142 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-h-cCCEEEEEeCCCCCHHHHHHHHHHHHhCCe------EEEeCCCC-CCHHHH
Confidence 35788899999999987766654332 2 23334333 35566555555444544442 11111111 111111
Q ss_pred HHHHhhCcCCCCCCchhHhhhhh
Q 010422 107 IKEALLDPYLSRYSAIIVDEAHE 129 (511)
Q Consensus 107 i~~~l~~~~l~~~~~iIiDE~H~ 129 (511)
....+......++++++||=+..
T Consensus 143 ~~~~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 143 AFDAIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC
Confidence 11112112235689999998653
No 276
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.69 E-value=0.0011 Score=66.48 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=40.6
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+++.+.++.||....-..+...+..|++..+.|.||+||||+.-.+.
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~ 51 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILF 51 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHh
Confidence 456677788888777788888899999999999999999999875554
No 277
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.012 Score=57.63 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=24.3
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
.++++++.||||+|||+++..++... ... +..++++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l-~~~-g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL-LDR-GKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-HHC-CCeEEEEE
Confidence 46889999999999997665443332 222 34555554
No 278
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.68 E-value=0.00025 Score=60.62 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=36.3
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++.+....-.-.++...+..++..|+.+.|+||.||||||++-+...
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh
Confidence 444454444445567778888999999999999999999988855543
No 279
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.68 E-value=0.0019 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhchHHHHHhhc
Q 010422 32 LIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 32 ~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+++.||+|+|||+++-.++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999998886665543
No 280
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.65 E-value=0.014 Score=60.70 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=91.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe-EEEEeccccccCCCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIPG 331 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gvdip~ 331 (511)
.+..+|+|..-.+.++-+.++|..+ ++.-..+.|+....+|..+...+....+ -.+++|-+-+.|||+-+
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTA 1113 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTA 1113 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccc
Confidence 4788999999888888888888887 8999999999999999999999876554 56899999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHh
Q 010422 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (511)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (511)
.+.||- ||..++ |---.+++-|+-|-|-+..=.+|+|.+....+
T Consensus 1114 ADTViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1114 ADTVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred cceEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHH
Confidence 999997 886554 33334456666666666677899999776543
No 281
>PF05729 NACHT: NACHT domain
Probab=96.64 E-value=0.0061 Score=53.37 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCchhchHHHHHhhc
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+.++|.|+.|+|||+++..++...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 368999999999998887666543
No 282
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.64 E-value=0.0025 Score=56.84 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=23.7
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
+.+++++++.||+|+|||.++..+..+... .+..+.++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~ 82 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFIT 82 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEE
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEee
Confidence 467889999999999999776555443332 244555554
No 283
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.63 E-value=0.0047 Score=57.28 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
+.-+++...+.+|..+.+.||+|+||||.+-+.--......+..++.=.-|.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~ 90 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch
Confidence 34556777788999999999999999998855533222232333444445555
No 284
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.63 E-value=0.0038 Score=60.88 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHH
Q 010422 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (511)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~ 70 (511)
+...+..+.+++|+|+|||||||++-.++.......+..+++.+....+
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~E 185 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAE 185 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcc
Confidence 3445677889999999999999988554433221122446666664444
No 285
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=96.63 E-value=0.00018 Score=63.35 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=49.0
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 72 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~ 72 (511)
|+.+...+..+.|.-.++-..+...+.+|+.+-+-||+|+||||.+ ...+.++.|..+.+
T Consensus 2 ~~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~F------------ymi~Glv~~d~G~i 61 (243)
T COG1137 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTF------------YMIVGLVRPDSGKI 61 (243)
T ss_pred CcEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEE------------EEEEEEEecCCceE
Confidence 3455677888888888889999999999999999999999999887 45566677766544
No 286
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.0066 Score=59.42 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=20.3
Q ss_pred HHhcCC--EEEEEcCCCCchhchHHHHHh
Q 010422 25 EVRKND--ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 25 ~l~~~~--~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..++ +.++.||+|+||||++..+..
T Consensus 42 ~v~~~~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 42 AVEAGHLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred HHhcCCCceeEEECCCCCCHHHHHHHHHH
Confidence 445454 689999999999998855543
No 287
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.61 E-value=6.7e-05 Score=80.65 Aligned_cols=45 Identities=29% Similarity=0.321 Sum_probs=35.1
Q ss_pred HHHhhccCCCH--HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 6 ILQQRKSLPIA--SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 6 ~~~~~~~l~~~--~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+.+..|+.. +..+.+...+..|+.+.|+|++||||||++-...
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~ 520 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLL 520 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHh
Confidence 34444555544 5777888889999999999999999999986665
No 288
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.00025 Score=67.22 Aligned_cols=51 Identities=29% Similarity=0.346 Sum_probs=40.0
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|+++++.+.+..++-.+..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred CceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 455666677777765556677778889999999999999999998876653
No 289
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.58 E-value=0.016 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+..+++.||+|+|||+++-.+...
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999888665544
No 290
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00056 Score=61.68 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=41.6
Q ss_pred CChhhHHHhhccCCC-HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc
Q 010422 1 MPRQKILQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~-~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~ 55 (511)
|.++++.++.....- .++.+.+...+..|+...|.||+||||||++..++-...+
T Consensus 1 m~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y 56 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56 (251)
T ss_pred CceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 345555565555555 4788888888999999999999999999998777654433
No 291
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.00032 Score=70.88 Aligned_cols=41 Identities=34% Similarity=0.333 Sum_probs=33.9
Q ss_pred ccCCCHH-HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 11 KSLPIAS-VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 11 ~~l~~~~-~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+++.+ +.+.+...+.+|+.+.|+|++||||||++-.++.
T Consensus 359 f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 359 FSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred EEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3444444 8888888999999999999999999998877764
No 292
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.54 E-value=0.00031 Score=66.64 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=39.8
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|+++++.+.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 1 m~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred CCcEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45566777777776555667777788999999999999999999887665
No 293
>PRK05642 DNA replication initiation factor; Validated
Probab=96.52 E-value=0.012 Score=55.15 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
..+++.||+|+|||.++-.+... ... .+..++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~-~~~-~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR-FEQ-RGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-HHh-CCCcEEEee
Confidence 46889999999999876544322 222 134455654
No 294
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.50 E-value=0.0086 Score=56.08 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
+..+++.||+|||||+++-.+...... .+..+.++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~ 80 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVP 80 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEE
Confidence 368999999999999887655443221 134455554
No 295
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.0019 Score=65.84 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=44.2
Q ss_pred ChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 2 ~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++++.+.++.||..+..+.+...+..|++..+.|.||+||||++-.+.
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLs 55 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS 55 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHh
Confidence 3577888999999999999999999999999999999999999986554
No 296
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.48 E-value=0.00012 Score=77.70 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=33.4
Q ss_pred HhhccCCCH--HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 8 QQRKSLPIA--SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 8 ~~~~~l~~~--~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+....+|.. +..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 325 ~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 325 GLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred EEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 344445442 35667777788999999999999999999877654
No 297
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.44 E-value=0.00028 Score=66.55 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=40.6
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
|+++++.+.+..++..+..+.+...+.+|+.+.|.||+||||||++-.+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 1 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CceEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4556667777777655566677778899999999999999999988666543
No 298
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.44 E-value=0.00033 Score=66.45 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=39.2
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|+++++.+.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 1 EPIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred CceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHh
Confidence 45566667777666555567777788999999999999999999987665
No 299
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.44 E-value=6.4e-05 Score=82.58 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=33.2
Q ss_pred HhhccCCC--HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 8 QQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 8 ~~~~~l~~--~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+..|+. .++.+++...+.+|+.+.|+||+||||||++-.++-
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred EEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 33444543 346677777789999999999999999998866653
No 300
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.41 E-value=0.0089 Score=65.10 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=46.4
Q ss_pred ccCCCHHHHHHHHHHH----hc-----CCEEEEEcCCCCchh--chHHHHHhhccccCCCeEEEEeCccHHHHHHHHH
Q 010422 11 KSLPIASVEKRLVEEV----RK-----NDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 77 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l----~~-----~~~~~i~apTGsGKT--t~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~ 77 (511)
..|..++-|.+....+ .. ++.++|.||||+||| +++|.+..... .+++++|...|..+..|...
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~---~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA---EKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHh
Confidence 3567777787755554 34 478999999999999 77776654332 24578898999999887753
No 301
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.40 E-value=0.021 Score=58.12 Aligned_cols=54 Identities=30% Similarity=0.298 Sum_probs=31.0
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCe-EEEEeCccHHHHHHHHHHHHHHhC
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGK-LIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~-~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.+++++|++|+||||.+..++.... ..+.. .++..-+.+..+..+.+.++...+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 4688999999999988766654322 22222 233333455555555555554443
No 302
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.39 E-value=0.0058 Score=59.73 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=32.5
Q ss_pred HHHHH-HHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 19 EKRLV-EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 19 q~~~~-~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
+.+.+ ..+..+++++|+|+|||||||++-.++.......+..+++++....
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~ 188 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG 188 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC
Confidence 33444 3567889999999999999988865553321112234565555444
No 303
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.038 Score=52.30 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=53.4
Q ss_pred HHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccC
Q 010422 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRT 101 (511)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~ 101 (511)
....+.+++++++.||+|+|||.++..+..+.. ..+..++++. ...++..+...... .
T Consensus 98 ~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~-~~el~~~Lk~~~~~-------------------~ 155 (254)
T COG1484 98 LVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFIT-APDLLSKLKAAFDE-------------------G 155 (254)
T ss_pred HHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEE-HHHHHHHHHHHHhc-------------------C
Confidence 334556888999999999999977655544443 2344555553 33333333332111 0
Q ss_pred ChhhhHHHHhhCcCCCCCCchhHhhhhhhhh---hhHHHHHHHHHHHH
Q 010422 102 STSTRIKEALLDPYLSRYSAIIVDEAHERTV---HTDVLLGLLKKVQN 146 (511)
Q Consensus 102 ~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~---~~~~ll~~l~~~~~ 146 (511)
....++.. .+.+++++||||+--... ..+.+..++.+...
T Consensus 156 ~~~~~l~~-----~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~ 198 (254)
T COG1484 156 RLEEKLLR-----ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYE 198 (254)
T ss_pred chHHHHHH-----HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHh
Confidence 11122222 245689999999753221 23444444444433
No 304
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.35 E-value=0.012 Score=54.77 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+..++++||+|||||+++-.+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999887655543
No 305
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.35 E-value=0.0055 Score=55.18 Aligned_cols=31 Identities=42% Similarity=0.491 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+-+...+..+++++++|||||||||++..++
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 3344567889999999999999999885544
No 306
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.30 E-value=0.0018 Score=69.32 Aligned_cols=47 Identities=28% Similarity=0.325 Sum_probs=36.2
Q ss_pred HHHhhccCC-CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 6 ILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 6 ~~~~~~~l~-~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+.+..|+ ..+..+++...+.+|+.+.++|||||||||++-.+...
T Consensus 331 f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 331 FENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred EEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 334455566 35667778888999999999999999999998766543
No 307
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.27 E-value=0.00013 Score=78.33 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++.+.+...+.+|+.++|+|++||||||++-.++-.
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356666677789999999999999999998776543
No 308
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.27 E-value=9.4e-05 Score=79.38 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++.+.+...+.+|+.+.|+||+||||||++-.++-.
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 466677777889999999999999999998776543
No 309
>PRK10867 signal recognition particle protein; Provisional
Probab=96.26 E-value=0.029 Score=57.03 Aligned_cols=92 Identities=26% Similarity=0.331 Sum_probs=47.6
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCC-CeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHH
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~ 108 (511)
..++++||+||||||.+..++.......+ +..++-.-+.|..+..+.+.++...+..+ +. . ...........
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~-~-~~~~dp~~i~~ 173 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FP-S-GDGQDPVDIAK 173 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----Ee-c-CCCCCHHHHHH
Confidence 36788999999999877666543322212 23334445677766655555554443221 11 1 01111111112
Q ss_pred HHhhCcCCCCCCchhHhhhh
Q 010422 109 EALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 109 ~~l~~~~l~~~~~iIiDE~H 128 (511)
..+......+++++|+|=+-
T Consensus 174 ~a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 174 AALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHHhcCCCEEEEeCCC
Confidence 22222233468899999874
No 310
>PRK08116 hypothetical protein; Validated
Probab=96.25 E-value=0.042 Score=52.50 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
..+++.|++|+|||.++..+. +..... +..++++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia-~~l~~~-~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIA-NELIEK-GVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HHHHHc-CCeEEEEE
Confidence 359999999999997765443 333222 33455554
No 311
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=96.25 E-value=0.033 Score=58.84 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=88.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCC-e-EEEEeccccccCCCCCC
Q 010422 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-R-KVILATNIAETSVTIPG 331 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~-~vlvaT~~~~~Gvdip~ 331 (511)
+.+||+|..=....+-+...|.-. ++....+.|...-.+|..++..|-..+ + -.|++|-+-+-|||+-+
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~ 847 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTC 847 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccc
Confidence 678999987666666666666554 888999999999999999999997654 3 56999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHh
Q 010422 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (511)
Q Consensus 332 v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (511)
.++||- ||-..+ |..-.++.-|+-|.|-..+=.+|+|+++...+
T Consensus 848 An~VIi--------hD~dFN-------P~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 848 ANTVII--------HDIDFN-------PYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred cceEEE--------eecCCC-------CcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999986 663322 55555666777777766688999999887443
No 312
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.23 E-value=0.01 Score=65.08 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=45.5
Q ss_pred cCCC-HHHHHHHH----HHHhcCCEEEEEcCCCCchhchHHHHHhhccc-cCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 12 SLPI-ASVEKRLV----EEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 12 ~l~~-~~~q~~~~----~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~-~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
.|++ ++.|.+.. .++.++++.++.+|||+|||..+....+.... .....+++++..+..-..++.+.+.+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 3444 77776554 55678999999999999999433333332211 11224688888887777777776655
No 313
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0006 Score=64.63 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=39.7
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|.++++.+.+..++-....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 1 MNKFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred CCeEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 445566677777765556677777889999999999999999998866643
No 314
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.21 E-value=0.033 Score=52.64 Aligned_cols=84 Identities=20% Similarity=0.079 Sum_probs=49.1
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCcc
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 87 (511)
.....+.+++.|--....+.+|+ ++.-.||=|||..+.++..-..+. |..+-++....-++..-++.+...+. .+
T Consensus 71 ~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~-~L 145 (266)
T PF07517_consen 71 RRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYE-FL 145 (266)
T ss_dssp HHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHH-HT
T ss_pred HHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--cCCcEEEeccHHHhhccHHHHHHHHH-Hh
Confidence 34556677888887777777777 789999999996666655554444 44455555666666555555444432 44
Q ss_pred CCeeeEEEe
Q 010422 88 GQRVGYSIR 96 (511)
Q Consensus 88 ~~~vg~~~~ 96 (511)
|..+|+...
T Consensus 146 Glsv~~~~~ 154 (266)
T PF07517_consen 146 GLSVGIITS 154 (266)
T ss_dssp T--EEEEET
T ss_pred hhccccCcc
Confidence 556665533
No 315
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.18 E-value=0.026 Score=58.47 Aligned_cols=38 Identities=21% Similarity=0.063 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCc
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p 67 (511)
..+++.||+|+|||+++-.+........++..++++..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45899999999999776554433322222455666643
No 316
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.00045 Score=64.96 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=38.0
Q ss_pred ChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 2 ~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++++.+.+..++..+..+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLC 52 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 3455666666666555667777788999999999999999999886554
No 317
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.00057 Score=64.80 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=38.4
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|..+++.+.+..++-.+..+.+...+..|+.+.|.||+||||||++-.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14240 1 MGKISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLN 50 (250)
T ss_pred CCeEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34455666666666555666777778899999999999999999886665
No 318
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.17 E-value=0.0092 Score=61.58 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
+..-|..+..++......+|.||+|+|||.....+++..... ....++++.|.-.++.+.++.+.+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHh
Confidence 467899999999999999999999999995555554443322 344688999999999999887643
No 319
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.00057 Score=64.94 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=38.8
Q ss_pred ChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 2 ~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++++.+.+..++..+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34556666676765556777777889999999999999999998866553
No 320
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.15 E-value=0.026 Score=53.78 Aligned_cols=106 Identities=22% Similarity=0.228 Sum_probs=57.2
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCC----C-eEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRD----G-KLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~----~-~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 104 (511)
.+++|+|+||-|||+++..+...+....+ . ..+.+-.|...-.......+....+..... . .......
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~------~-~~~~~~~ 134 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP------R-DRVAKLE 134 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC------C-CCHHHHH
Confidence 48999999999999999888765543221 1 123333354444444444454545433211 0 1111111
Q ss_pred hhHHHHhhCcCCCCCCchhHhhhhhh----hhhhHHHHHHHHHHH
Q 010422 105 TRIKEALLDPYLSRYSAIIVDEAHER----TVHTDVLLGLLKKVQ 145 (511)
Q Consensus 105 ~~i~~~l~~~~l~~~~~iIiDE~H~r----~~~~~~ll~~l~~~~ 145 (511)
.....++.. -++.++||||+|.. ......++..+|.+.
T Consensus 135 ~~~~~llr~---~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 135 QQVLRLLRR---LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG 176 (302)
T ss_pred HHHHHHHHH---cCCcEEEeechHHHhcccHHHHHHHHHHHHHHh
Confidence 222233332 35789999999952 223344556666553
No 321
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.15 E-value=0.00031 Score=67.48 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=34.8
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+.+..++-..+.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 3 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (271)
T PRK13638 3 ATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLS 48 (271)
T ss_pred EEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 3445555565445666777778899999999999999999886554
No 322
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.011 Score=60.42 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=22.8
Q ss_pred HHHHHHhcCC---EEEEEcCCCCchhchHHHHHhh
Q 010422 21 RLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 21 ~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+...+..++ .++++||.|+||||++-.++..
T Consensus 29 ~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 29 ALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444556665 3699999999999887666543
No 323
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.14 E-value=7.2e-05 Score=81.79 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=33.4
Q ss_pred HhhccCCC--HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 8 QQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 8 ~~~~~l~~--~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+..|+. .+..+.+...+.+|+.+.|+||+||||||++-.++-.
T Consensus 456 nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 456 RVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred EEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33444542 2456667777889999999999999999998777643
No 324
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.14 E-value=0.00089 Score=63.20 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=34.6
Q ss_pred HHHhhccCC-CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 6 ILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 6 ~~~~~~~l~-~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+.+..++ -.++.+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 445555555 345667777788999999999999999999986554
No 325
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.12 E-value=0.0006 Score=65.34 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=39.0
Q ss_pred CChhhHHHhhccCCC---------HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPI---------ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~---------~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|+++++.+.+..++. ..+.+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 556667777777752 34566777788999999999999999999886654
No 326
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.019 Score=61.38 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCC---EEEEEcCCCCchhchHHHHHhh
Q 010422 17 SVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 17 ~~q~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+.+.+...+.+|+ -++++||.|+||||++-.+...
T Consensus 23 ~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 23 HVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444555566554 4689999999999887655543
No 327
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0018 Score=60.15 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=21.6
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+....++.+-|++|||||+++..+.
T Consensus 19 ~~~p~~GvTAlFG~SGsGKTslin~Ia 45 (352)
T COG4148 19 FTLPARGITALFGPSGSGKTSLINMIA 45 (352)
T ss_pred ccCCCCceEEEecCCCCChhhHHHHHh
Confidence 344555789999999999999987664
No 328
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.00073 Score=63.32 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=34.8
Q ss_pred hHHHhhccCCCH----HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 5 KILQQRKSLPIA----SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 5 ~~~~~~~~l~~~----~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+.+..++-. +..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 3 ~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 3 ELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred EEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344555555443 45666777789999999999999999998866543
No 329
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.10 E-value=0.00012 Score=80.25 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+.+...+.+|+.+.|+||+||||||++-.++-
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45566666788999999999999999999876653
No 330
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.09 E-value=0.00072 Score=63.00 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=37.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++-.+..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 8 i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred EEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 455566666655556677777889999999999999999998866553
No 331
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.00084 Score=61.97 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=33.3
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.+..++-.++.+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 4 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred eeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34445554444566677788999999999999999999886554
No 332
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.06 E-value=0.027 Score=57.54 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCchhchHHHHHhhcccc-CCCeEEEEeC
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQ 66 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~-~~~~~i~~~~ 66 (511)
..+++.||+|+|||+++-.+. ..... ..+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~-~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIG-NEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHH-HHHHHhCCCCcEEEEE
Confidence 357899999999997764433 33222 2244566664
No 333
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.06 E-value=0.16 Score=51.52 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=111.2
Q ss_pred ccEEEeccCCCHHHHH---hhhCC----CCe-------EEeCCccccccEEEcCCCCCchH-------HHHHHHHHHHhh
Q 010422 192 LKLIIMSASLDARGFS---EYFGC----AKA-------VHVQGRQFPVEILYTLYPEPDYL-------DATLITIFQVHL 250 (511)
Q Consensus 192 ~~~i~~SAT~~~~~l~---~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 250 (511)
.|.|++|+..+++..+ ..+.+ ... -.+..-..++...+...+..+.. +-....++....
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 5899999998776533 22211 111 11112223445555443332221 122233444444
Q ss_pred -cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecccc--ccCC
Q 010422 251 -DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA--ETSV 327 (511)
Q Consensus 251 -~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~--~~Gv 327 (511)
....+.+|||+||.=+--.+...|.+. ++....+|-..+..+-.+.=..|..|+.+|++-|-=+ =+=.
T Consensus 296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy 366 (442)
T PF06862_consen 296 RDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRY 366 (442)
T ss_pred hccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhc
Confidence 555788999999999999999999865 7888888988888888888899999999999999732 2234
Q ss_pred CCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCC----CCCCeEEEecChhhHhh
Q 010422 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR----EGPGKCFRLYPENEFDK 391 (511)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR----~~~G~~~~l~~~~~~~~ 391 (511)
.|-+++.||=+|+.. .|.-..++..+.+.... .+...|..+|++-+.-.
T Consensus 367 ~irGi~~viFY~~P~---------------~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 367 RIRGIRHVIFYGPPE---------------NPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred eecCCcEEEEECCCC---------------ChhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 567788888733211 23334455555554433 12578999998876544
No 334
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.05 E-value=0.008 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.1
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++.||+|+||||++-.+..+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhc
Confidence 37899999999999988555444
No 335
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.05 E-value=0.0077 Score=59.36 Aligned_cols=45 Identities=22% Similarity=0.121 Sum_probs=29.7
Q ss_pred HHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
+...+..+++++|+|||||||||++-.++.. ... ..+++.+....
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~-i~~--~~rivtiEd~~ 199 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISA-IPP--QERLITIEDTL 199 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcc-cCC--CCCEEEECCCc
Confidence 3344678899999999999999988555432 221 23455555444
No 336
>PRK06921 hypothetical protein; Provisional
Probab=96.04 E-value=0.04 Score=52.54 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
.+.++++.||+|+|||+++..++. ......+..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~-~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN-ELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH-HHhhhcCceEEEEE
Confidence 467899999999999977754443 33332134455554
No 337
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.04 E-value=0.055 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++||+||||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999887665543
No 338
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.03 E-value=0.0011 Score=61.24 Aligned_cols=43 Identities=33% Similarity=0.389 Sum_probs=32.7
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+..++-....+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 4 ~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 4 DLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred cceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 3444454444566777788999999999999999999986654
No 339
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.0021 Score=57.38 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=35.5
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..+.+...........+...+..|+.+.|.||+|+||||++-..--+
T Consensus 3 ~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 3 RAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred eeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc
Confidence 344444555555666677778899999999999999999998555433
No 340
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.00 E-value=0.0011 Score=60.79 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=32.4
Q ss_pred HhhccCCC-HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 8 QQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 8 ~~~~~l~~-~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.++.++- ....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 4 ~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred cEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444443 345556666788999999999999999999866543
No 341
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.99 E-value=0.036 Score=48.60 Aligned_cols=41 Identities=37% Similarity=0.486 Sum_probs=29.1
Q ss_pred cCCCHHHHHHHHHHH-hcCCEEEEEcCCCCchhchHHHHHhhccc
Q 010422 12 SLPIASVEKRLVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l-~~~~~~~i~apTGsGKTt~~~~~l~~~~~ 55 (511)
.+|...+.++ .+ .+-.+++|+|.+||||||++..+.....+
T Consensus 22 slPa~r~l~~---~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~ 63 (233)
T COG3910 22 SLPAFRHLEE---RLEFRAPITFITGENGSGKSTLLEAIAAGMGF 63 (233)
T ss_pred cchHHHhhhh---hccccCceEEEEcCCCccHHHHHHHHHhhccc
Confidence 3444554444 22 25678999999999999999888765554
No 342
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.99 E-value=0.00075 Score=64.12 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=36.8
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+++.+.+..++-....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence 345556666665444566777778999999999999999999987665
No 343
>PRK12377 putative replication protein; Provisional
Probab=95.97 E-value=0.058 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..++++.||+|+|||+++..+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~ 123 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN 123 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999977655443
No 344
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.96 E-value=0.017 Score=49.79 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=60.9
Q ss_pred hhHHHhhccCCC----HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHH
Q 010422 4 QKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 79 (511)
Q Consensus 4 ~~~~~~~~~l~~----~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 79 (511)
+++.+..+.++- -++.+.+...+..|+.+.|+||.||||||++....--.... .+...+.=+|...+-.. ..
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s-sGeV~l~G~~L~~ldEd---~r 82 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS-SGEVRLLGQPLHKLDED---AR 82 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC-CceEEEcCcchhhcCHH---HH
Confidence 344444444442 23455666677899999999999999999886654332222 13333333333222211 12
Q ss_pred HHHhCCccCCeeeEEEeecccCChhhhHHHHhhC
Q 010422 80 AEESGVELGQRVGYSIRFDDRTSTSTRIKEALLD 113 (511)
Q Consensus 80 ~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~l~~ 113 (511)
+.+. +..+|+.++.....+..+.+++....
T Consensus 83 A~~R----~~~vGfVFQSF~Lip~ltAlENV~lP 112 (228)
T COG4181 83 AALR----ARHVGFVFQSFHLIPNLTALENVALP 112 (228)
T ss_pred HHhh----ccceeEEEEeeeccccchhhhhccch
Confidence 3333 36789999988888888877755443
No 345
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.0053 Score=59.78 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=36.5
Q ss_pred cCCCCCCchhHhh--hhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCC
Q 010422 114 PYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTN 176 (511)
Q Consensus 114 ~~l~~~~~iIiDE--~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 176 (511)
.++.+-+.+|+|| ++..+.....+...+-...+...++.-..++|...-.+-|+++....|..
T Consensus 462 AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 462 ALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526 (546)
T ss_pred HHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCce
Confidence 3466678999999 44444444444444444444444554455666666666677776655443
No 346
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.96 E-value=0.016 Score=65.42 Aligned_cols=107 Identities=22% Similarity=0.313 Sum_probs=88.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC--CeEEEEeccccccCCCCCCeE
Q 010422 256 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG--FRKVILATNIAETSVTIPGIK 333 (511)
Q Consensus 256 ~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g--~~~vlvaT~~~~~Gvdip~v~ 333 (511)
++|+|.+-.....-+...+... ++....++|+++..+|...++.|.++ ..-.+++|.+.+.|+|.-.-+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 8999999999888888888875 56788899999999999999999885 556788888999999999999
Q ss_pred EEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChhhH
Q 010422 334 YVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 389 (511)
Q Consensus 334 ~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 389 (511)
+||. ||+ |..++...|...|+.|.| +=.+|++.++...
T Consensus 784 ~vi~--------~d~----------~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 784 TVIL--------FDP----------WWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred eEEE--------ecc----------ccChHHHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 9998 884 566666666666666655 5578888877653
No 347
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.94 E-value=0.0053 Score=65.34 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 456666677899999999999999999987665
No 348
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.94 E-value=0.018 Score=53.69 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=24.0
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+.+|..+++.||+||||||++.+++...
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999999999999877776654
No 349
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.93 E-value=0.0043 Score=65.98 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..+.+...+.+|+.+.|+||+||||||++-...-.
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456677777889999999999999999998777643
No 350
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.024 Score=58.54 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=22.7
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCchhchHHHHHhh
Q 010422 20 KRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 20 ~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+...+.+++ .++++||+|+||||++-.+...
T Consensus 24 ~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 24 KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33444455554 3689999999999888666543
No 351
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.92 E-value=0.00096 Score=61.63 Aligned_cols=48 Identities=25% Similarity=0.160 Sum_probs=37.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++-.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 445566666655556677777889999999999999999998866654
No 352
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.91 E-value=0.043 Score=56.49 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccc-cCCCeEEEEeCc
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQP 67 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~-~~~~~~i~~~~p 67 (511)
..+++.|++|+|||+++- ++..... ..++.+++++.+
T Consensus 142 npl~i~G~~G~GKTHLl~-Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLK-AAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 358899999999997774 4333222 223556666654
No 353
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.91 E-value=0.00018 Score=76.94 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=31.7
Q ss_pred hhccCCC-HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 9 QRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 9 ~~~~l~~-~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
....++. .+..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 340 v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 340 ITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred EEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHcc
Confidence 3444443 234566666778999999999999999999876653
No 354
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.91 E-value=0.018 Score=62.03 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+.+.+...+.+|+.+.|+||+||||||++-.++-..
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445555667899999999999999999987775443
No 355
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.89 E-value=0.0012 Score=71.05 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+.+...+.+|+.+.|+|++||||||++-.+.-.
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl 390 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 55666677889999999999999999988776543
No 356
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.89 E-value=0.00082 Score=62.27 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHh
Confidence 4556666778899999999999999999886664
No 357
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.00079 Score=63.49 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=35.4
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+....++..++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 4 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 4 QLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34455555554455666777788999999999999999999876653
No 358
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.88 E-value=0.0012 Score=60.81 Aligned_cols=43 Identities=28% Similarity=0.351 Sum_probs=31.8
Q ss_pred hhccCCC--HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 9 QRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 9 ~~~~l~~--~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..++- ..+.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 5 LSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred EEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3444443 345566666788999999999999999998866653
No 359
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.87 E-value=0.00062 Score=62.15 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3344455554456667777788999999999999999999876543
No 360
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.00083 Score=63.29 Aligned_cols=48 Identities=21% Similarity=0.177 Sum_probs=35.7
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445555555654445566777788999999999999999998866653
No 361
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.86 E-value=0.0009 Score=61.74 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=32.6
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+..++-.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 5 NVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred eeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33444444445566667788999999999999999999866653
No 362
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.86 E-value=0.0016 Score=60.62 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=36.2
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+.+..+...++.+.+...+..|+.+.|.||+||||||++-.+.-
T Consensus 24 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 24 GILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred hhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34455556655566777777889999999999999999999866653
No 363
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.85 E-value=0.00062 Score=62.37 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+..++..+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 5 RNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred EEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 344444544445566777889999999999999999998866554
No 364
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.84 E-value=0.013 Score=56.13 Aligned_cols=40 Identities=35% Similarity=0.358 Sum_probs=27.4
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
.+..+.+++++|||||||||++..++... ... ..+++++.
T Consensus 123 ~v~~~~~ili~G~tGSGKTT~l~all~~i-~~~-~~~iv~iE 162 (270)
T PF00437_consen 123 AVRGRGNILISGPTGSGKTTLLNALLEEI-PPE-DERIVTIE 162 (270)
T ss_dssp CHHTTEEEEEEESTTSSHHHHHHHHHHHC-HTT-TSEEEEEE
T ss_pred ccccceEEEEECCCccccchHHHHHhhhc-ccc-ccceEEec
Confidence 34668899999999999999986665432 222 24555554
No 365
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.84 E-value=0.0011 Score=61.22 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=33.1
Q ss_pred HHHhhccCC-CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 6 ILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 6 ~~~~~~~l~-~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+....++ -..+.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 334444553 234556677788999999999999999999986554
No 366
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.84 E-value=0.017 Score=61.55 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCE---EEEEcCCCCchhchHHHHHh
Q 010422 16 ASVEKRLVEEVRKNDI---LIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~---~~i~apTGsGKTt~~~~~l~ 51 (511)
....+.+...+..|+. ++++||.|+||||++-.+..
T Consensus 22 e~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 22 EHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344455566667664 68999999999988755543
No 367
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.00071 Score=66.66 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=39.7
Q ss_pred CChhhHHHhhccCCC----HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~----~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|+++++.+.+..|+. ....+.+...+.+|+.+.|.||+||||||++-.++-
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~G 55 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMG 55 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 555677777777754 235667778889999999999999999998866653
No 368
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0013 Score=57.56 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.....+...+..|+.+.|.||+||||||++-++.
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRila 49 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILA 49 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 3445566678899999999999999999885553
No 369
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.83 E-value=0.00063 Score=62.48 Aligned_cols=49 Identities=20% Similarity=0.064 Sum_probs=35.8
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+++.+.++.++-....+.+...+.+|+.+.|.||+||||||++-.+.-.
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555555544455666677889999999999999999998666543
No 370
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.00092 Score=62.05 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=32.3
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
....++-.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 6 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3444444445566777788999999999999999999876653
No 371
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.83 E-value=0.0014 Score=72.83 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=35.7
Q ss_pred hHHHhhccCCCHH---HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 5 KILQQRKSLPIAS---VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 5 ~~~~~~~~l~~~~---~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+....||.+| +.+.+...+..|+.+.++||.||||||++.++-
T Consensus 989 ~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe 1037 (1228)
T KOG0055|consen 989 EFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE 1037 (1228)
T ss_pred EEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 4455566777654 556777788999999999999999999885553
No 372
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.82 E-value=0.038 Score=51.11 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
.+.|.||+|+|||.++-.+.-+.....++.+++++.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 589999999999976544432222222355676765
No 373
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.82 E-value=0.0023 Score=70.25 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=34.0
Q ss_pred HHhhccCCC---HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 7 LQQRKSLPI---ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 7 ~~~~~~l~~---~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+....||. .++.+++...+.+|+.+.|+||+||||||++-.+.-
T Consensus 482 ~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 482 QDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred EEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334444542 246677778889999999999999999999877653
No 374
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.81 E-value=0.012 Score=53.43 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=17.2
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++|+|||||||||++..++.
T Consensus 3 lilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999998865443
No 375
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.81 E-value=0.0011 Score=62.86 Aligned_cols=49 Identities=27% Similarity=0.240 Sum_probs=36.5
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+++.+.+..++.....+.+...+.+|+.+.|.||+||||||++-.+.-.
T Consensus 4 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4455556666544455667778899999999999999999988665543
No 376
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.81 E-value=0.0014 Score=68.81 Aligned_cols=51 Identities=22% Similarity=0.154 Sum_probs=40.6
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|.++++.+.+..|+-.++.+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 1 m~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 1 MSSLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred CceEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 345666777777766556777888889999999999999999999866653
No 377
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.80 E-value=0.0012 Score=61.58 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667777889999999999999999998866653
No 378
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.79 E-value=0.022 Score=59.67 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCC---EEEEEcCCCCchhchHHHHHh
Q 010422 18 VEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 18 ~q~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+.+...+..++ .++++||.|+||||++-.++.
T Consensus 24 ~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 24 ALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344556666655 378999999999988766653
No 379
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.78 E-value=0.00096 Score=62.00 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=31.6
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+....++-.+..+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 5 NLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred eEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 3344444334455666678899999999999999999886554
No 380
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.78 E-value=0.0012 Score=62.05 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=32.7
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred eeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHc
Confidence 34444454334556667778899999999999999999886554
No 381
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.78 E-value=0.001 Score=61.67 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=33.5
Q ss_pred HHhhccCCCH----HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 7 LQQRKSLPIA----SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 7 ~~~~~~l~~~----~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+..++-. ++.+.+...+..|+.+.|.||+||||||++-.+.-
T Consensus 5 ~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 5 DALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3444555433 45666777788999999999999999999866653
No 382
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.77 E-value=0.066 Score=54.45 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=31.9
Q ss_pred EEEEEcCCCCchhchHHHHHhhccccCC-CeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.++++|++||||||.+..++.......+ +..++-.-+.|..+.++.+.++...+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g 155 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVG 155 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcC
Confidence 6788999999999887666554221112 22333344566666555555544433
No 383
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.001 Score=63.44 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=35.8
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.+..++-.+..+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 14 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred EEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44455566665444566677778999999999999999999986665
No 384
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.001 Score=63.16 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=37.5
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.+..++-....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFN 53 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHh
Confidence 455666666666555666777778899999999999999999886665
No 385
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.76 E-value=0.0012 Score=62.29 Aligned_cols=44 Identities=27% Similarity=0.272 Sum_probs=33.2
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+..++-....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 5 DLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred eEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44444543345566777889999999999999999998866653
No 386
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.75 E-value=0.0012 Score=61.21 Aligned_cols=44 Identities=27% Similarity=0.322 Sum_probs=33.0
Q ss_pred HhhccCCC--HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 8 QQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 8 ~~~~~l~~--~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+..++- .++.+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34444543 345666777789999999999999999998866653
No 387
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.75 E-value=0.033 Score=61.18 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35666777788999999999999999999876653
No 388
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.75 E-value=0.0013 Score=61.68 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=33.1
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.++.++-....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred EEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34444544445566777788999999999999999998866653
No 389
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.74 E-value=0.00096 Score=63.59 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=36.8
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+.+..++..++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445555666654445666777788999999999999999999876653
No 390
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.00085 Score=63.82 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=36.5
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++-....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 445556666654455667777788999999999999999998866653
No 391
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.74 E-value=0.001 Score=61.99 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=33.1
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.-.
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344445444455666667889999999999999999998766533
No 392
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.73 E-value=0.00083 Score=63.84 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+..++-..+.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 5 SHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred EEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344444443345566667788999999999999999999866653
No 393
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.73 E-value=0.012 Score=57.95 Aligned_cols=43 Identities=26% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
.++..+.+++|+|+|||||||++..++ ..... ..+++.+.-..
T Consensus 155 ~~v~~~~nili~G~tgSGKTTll~aL~-~~ip~--~~ri~tiEd~~ 197 (332)
T PRK13900 155 HAVISKKNIIISGGTSTGKTTFTNAAL-REIPA--IERLITVEDAR 197 (332)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHH-hhCCC--CCeEEEecCCC
Confidence 345678899999999999999885544 33222 33555554333
No 394
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.72 E-value=0.025 Score=61.65 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=47.5
Q ss_pred HHhhccCCCHHHHHHHHHHH----hcCCEEEEEcCCCCchhc--hHHHHHhhccccCCCeEEEEeCccHHHHHHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEV----RKNDILIIVGETGSGKTT--QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l----~~~~~~~i~apTGsGKTt--~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 78 (511)
......+.+++.|.+....+ .+++.+++.||||+|||. ++|.+..... . +..+++..++..+..|..++
T Consensus 8 ~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~--~-~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 8 AVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE--E-GKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH--c-CCcEEEECCCHHHHHHHHHh
Confidence 34455677888888776554 467779999999999994 4444433322 1 35688888888887776654
No 395
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0015 Score=62.00 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=37.1
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.+..++-.++.+.+...+..|+.+.|.||+||||||++-.+.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344556666665555667777788999999999999999999886664
No 396
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.00081 Score=67.45 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=38.1
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|..+++.+.++.|+-....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 1 m~~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 1 MASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred CCEEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 444556666666654445566777788999999999999999999866653
No 397
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.00089 Score=63.84 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=36.9
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+....++-.+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556666666654445566666788999999999999999999876653
No 398
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.69 E-value=0.018 Score=58.35 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHh--cCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 13 LPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 13 l~~~~~q~~~~~~l~--~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+...+.+.+.+..+. .+..++++|||||||||.+-.++...
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 344555555555543 44578999999999998876665444
No 399
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.0011 Score=62.82 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=36.5
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.+..++-.+..+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 345556666665444566677778899999999999999999987664
No 400
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.68 E-value=0.0009 Score=62.87 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=32.4
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.+..++-....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 5 AGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34444444334455666678899999999999999999886665
No 401
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.0012 Score=62.48 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=37.3
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++-.+..+.+...+..|+.+.|+||+||||||++-.+.-
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 445666666765556667777788999999999999999998876653
No 402
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.67 E-value=0.0011 Score=63.27 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=35.3
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+.+..++-..+.+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 4 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 50 (258)
T PRK13548 4 EARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG 50 (258)
T ss_pred EEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34455555654445666777788999999999999999998866653
No 403
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.67 E-value=0.0011 Score=63.61 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=35.5
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++-..+.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 22 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344455555554445566677788999999999999999999876653
No 404
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.00093 Score=62.71 Aligned_cols=43 Identities=37% Similarity=0.450 Sum_probs=31.7
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 6 LTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred EEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3344443344556666788999999999999999998866653
No 405
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.66 E-value=0.012 Score=51.94 Aligned_cols=46 Identities=20% Similarity=0.097 Sum_probs=27.1
Q ss_pred EEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHH
Q 010422 33 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 79 (511)
Q Consensus 33 ~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 79 (511)
+|+|+-|-|||+++-+++...... +...++++.|....+....+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-~~~~I~vtAP~~~~~~~lf~~~ 46 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-GKIRILVTAPSPENVQTLFEFA 46 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-cCceEEEecCCHHHHHHHHHHH
Confidence 589999999998887666544332 2357999999998887777654
No 406
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.66 E-value=0.0012 Score=60.96 Aligned_cols=43 Identities=33% Similarity=0.428 Sum_probs=31.7
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..++.....+.+...+.+|+.+.+.||+||||||++-.+.-
T Consensus 6 l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred EEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3344443345556666788999999999999999998866653
No 407
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.66 E-value=0.00094 Score=64.34 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=38.6
Q ss_pred CChhhHHHhhccCCC-HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~-~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|.++++.+.+..++. ....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 1 ~~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 52 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG 52 (277)
T ss_pred CceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 455566667777752 335666777788999999999999999999866653
No 408
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.65 E-value=0.00089 Score=63.45 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=36.0
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.+..++-..+.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 455566666665444555666678899999999999999999986654
No 409
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.65 E-value=0.0012 Score=63.20 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=37.1
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+....++-.+..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 52 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG 52 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4455566666654455667777788999999999999999998866653
No 410
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.65 E-value=0.0011 Score=62.56 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=36.5
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 344556666655456667777788999999999999999998866654
No 411
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.64 E-value=0.0012 Score=61.62 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=32.6
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+....++-.+..+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 5 NLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred eEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3344454444566777778999999999999999999986554
No 412
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.64 E-value=0.0014 Score=62.14 Aligned_cols=47 Identities=28% Similarity=0.308 Sum_probs=35.6
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+.+..++-.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 3 ~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (248)
T PRK09580 3 SIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred EEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 44555566655456667777788999999999999999998866543
No 413
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.63 E-value=0.0011 Score=63.09 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=33.9
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+....|+-..+.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 15 i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred EEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444455544445566667788999999999999999998866653
No 414
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.63 E-value=0.018 Score=57.19 Aligned_cols=23 Identities=43% Similarity=0.744 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++..++|+|||||||||++..++
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 77899999999999998885544
No 415
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.62 E-value=0.0011 Score=62.49 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=34.0
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+.+..++-.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3344445544445666777788999999999999999998866653
No 416
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.62 E-value=0.11 Score=50.09 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=61.6
Q ss_pred EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC--ccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHH
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~--p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~ 108 (511)
+++++|-+|+||||.+.-+...... .+.++++.. ..|+.+..+.+.+.+..+..+ +. + .........+-
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~--~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v---I~---~-~~G~DpAaVaf 211 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQ--QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV---IS---G-KEGADPAAVAF 211 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHH--CCCeEEEEecchHHHHHHHHHHHHHHHhCCeE---Ec---c-CCCCCcHHHHH
Confidence 6788999999999887666544332 244455544 567777777776777666432 11 1 11111222333
Q ss_pred HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHH
Q 010422 109 EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (511)
Q Consensus 109 ~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~ 146 (511)
..+.....++++++++|=|-. -....-|+.-|+++..
T Consensus 212 DAi~~Akar~~DvvliDTAGR-Lhnk~nLM~EL~KI~r 248 (340)
T COG0552 212 DAIQAAKARGIDVVLIDTAGR-LHNKKNLMDELKKIVR 248 (340)
T ss_pred HHHHHHHHcCCCEEEEeCccc-ccCchhHHHHHHHHHH
Confidence 444444566899999999753 3344445555555443
No 417
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.00097 Score=62.77 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=35.2
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+.+..++-.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 4 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 4 EVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred EEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34455555554445666777788999999999999999998866653
No 418
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.61 E-value=0.0012 Score=63.39 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=34.8
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+.+..++-....+.+...+..|+.+.|+||+||||||++-.+.-
T Consensus 3 ~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG 49 (272)
T PRK13547 3 TADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49 (272)
T ss_pred EEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34445555544445667777789999999999999999999866643
No 419
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.61 E-value=0.0012 Score=62.39 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=33.1
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.+..++-....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 5 ENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred EEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34444454444556677778999999999999999999986654
No 420
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.61 E-value=0.21 Score=48.11 Aligned_cols=107 Identities=23% Similarity=0.228 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHh------cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEE------eCccHHHHHHHHHHHHHHh
Q 010422 16 ASVEKRLVEEVR------KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV------TQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 16 ~~~q~~~~~~l~------~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~------~~p~~~l~~~~~~~~~~~~ 83 (511)
...|+++...+. +++.++++||-|||||+++.-.+.+ .... +...++ ++..+.+.......++.+.
T Consensus 30 ~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~-~E~~l~v~Lng~~~~dk~al~~I~rql~~e~ 107 (408)
T KOG2228|consen 30 QDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQEN-GENFLLVRLNGELQTDKIALKGITRQLALEL 107 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhc-CCeEEEEEECccchhhHHHHHHHHHHHHHHH
Confidence 334555554443 4567999999999999888777776 2111 222222 2224445555555555444
Q ss_pred CCccCCeeeEEEeecccCChhhhHHHHhhCc-CCCCC-CchhHhhhhhhh
Q 010422 84 GVELGQRVGYSIRFDDRTSTSTRIKEALLDP-YLSRY-SAIIVDEAHERT 131 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~i~~~l~~~-~l~~~-~~iIiDE~H~r~ 131 (511)
... .. .+.+-....+++...+... .-... =++|+||++...
T Consensus 108 ~~~-~k------~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~ 150 (408)
T KOG2228|consen 108 NRI-VK------SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFA 150 (408)
T ss_pred hhh-he------eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccc
Confidence 321 11 1123333445555444432 22223 356888876433
No 421
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.61 E-value=0.089 Score=51.22 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.++.+++.||+|+|||+++..+....
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999998776554443
No 422
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.60 E-value=0.022 Score=62.39 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=31.0
Q ss_pred CCCCCchHHHHHHHHHHHh----hcCCCCcEEEEcCCHHHHHHHHHHHHH
Q 010422 231 LYPEPDYLDATLITIFQVH----LDEAPGDILVFLTGQEEIESVERLVQE 276 (511)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~LVF~~s~~~~~~l~~~l~~ 276 (511)
..|....+...+..+.... ...+++++||||+.+..|.++.+.|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3455555555555444431 113467899999999999999998855
No 423
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.60 E-value=0.038 Score=56.84 Aligned_cols=38 Identities=21% Similarity=0.087 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCc
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p 67 (511)
..+++.||+|+|||.++-.+........++..++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 36899999999999776544433222222445666653
No 424
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.0011 Score=61.59 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455666678899999999999999999986654
No 425
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.0012 Score=63.01 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=37.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++..+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred EEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 445566666665556667777789999999999999999999876653
No 426
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.0019 Score=55.48 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
...++..++..|+.+++.||.|+||||++-..-.+.
T Consensus 26 V~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence 445677788899999999999999998875544433
No 427
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.0011 Score=65.51 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=38.8
Q ss_pred CChhhHHHhhccCCC----HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~----~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|+++++.+.++.|+. ....+.+...+.+|+.+.|+|++||||||++-.++-
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~G 55 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG 55 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHc
Confidence 455667777777642 235567777889999999999999999998866653
No 428
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.59 E-value=0.001 Score=63.39 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=37.0
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+.+..++..+..+.+...+.+|+.+.|.|++||||||++-.+.-
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 55 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNR 55 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445555566654456667777788999999999999999998876654
No 429
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.59 E-value=0.00079 Score=64.56 Aligned_cols=49 Identities=20% Similarity=0.114 Sum_probs=35.4
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+.+..++-....+.+...+..|+.+.|.||+||||||++-.+.-
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445555555554444556667788999999999999999998866553
No 430
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.58 E-value=0.0015 Score=59.96 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=29.9
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++-.+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 7 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 7 KFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred EECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3333334455666678999999999999999998866653
No 431
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.58 E-value=0.0034 Score=71.44 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.+.+...+..|+.+.|+|.||||||+++....
T Consensus 1154 ~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF 1187 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF 1187 (1381)
T ss_pred chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH
Confidence 5777888888999999999999999998764443
No 432
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.57 E-value=0.00081 Score=66.93 Aligned_cols=51 Identities=27% Similarity=0.326 Sum_probs=38.5
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|+++++.+.++.|+-....+.+...+..|+.+.+.||+||||||++-.+.-
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaG 52 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred CcEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 345566677777765444556666788999999999999999998866653
No 433
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.0012 Score=62.61 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.5
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+.+..++..+..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3455566666665556667777789999999999999999998866653
No 434
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.56 E-value=0.001 Score=66.18 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=37.4
Q ss_pred ChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 2 ~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.++++.+.++.|+-....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVA 53 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 3455666666666444556677778899999999999999999986665
No 435
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.55 E-value=0.0014 Score=62.42 Aligned_cols=49 Identities=27% Similarity=0.228 Sum_probs=37.4
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+....++-....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA 54 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4555666666665445566667788999999999999999998866653
No 436
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.23 Score=50.41 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=80.8
Q ss_pred hhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecccc--ccC
Q 010422 249 HLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA--ETS 326 (511)
Q Consensus 249 ~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~--~~G 326 (511)
........+||+.|+.=+--.+...+.+. .+....+|--.+.+.-.+.=+.|-.|...|++-|.-+ =+-
T Consensus 547 ~~k~t~s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR 617 (698)
T KOG2340|consen 547 LIKRTESGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRR 617 (698)
T ss_pred hcccccCceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhh
Confidence 33334567999999999999998888876 3333333433333333334455677889999998643 345
Q ss_pred CCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-----CCeEEEecChhhHh
Q 010422 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-----PGKCFRLYPENEFD 390 (511)
Q Consensus 327 vdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-----~G~~~~l~~~~~~~ 390 (511)
-+|-+|+-||- |-|.+ .|.-.++++.|.+|+.-.| .-.|-.||++-+--
T Consensus 618 ~~ikGVk~vVf--------YqpP~-------~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 618 YHIKGVKNVVF--------YQPPN-------NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred heecceeeEEE--------ecCCC-------CcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhH
Confidence 67888999997 65443 3777899999999986544 23788888876543
No 437
>PRK10908 cell division protein FtsE; Provisional
Probab=95.53 E-value=0.0013 Score=61.17 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=32.8
Q ss_pred HHHhhccC-CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 6 ILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 6 ~~~~~~~l-~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+.++.+ +-....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34444555 2233455666778899999999999999999987665
No 438
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.53 E-value=0.0015 Score=70.74 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=42.3
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|.++++.+.++.|+...+.+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 1 m~~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG 51 (635)
T PRK11147 1 MSLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51 (635)
T ss_pred CcEEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 556777788888876667778888889999999999999999999877653
No 439
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.53 E-value=0.0085 Score=48.05 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.5
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+..++.+++.||+||||||++....
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 345678899999999999999887654
No 440
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.00091 Score=61.58 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3445556678999999999999999999866653
No 441
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.52 E-value=0.0013 Score=62.41 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=35.3
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.+..++-....+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (252)
T PRK14255 6 ITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLN 52 (252)
T ss_pred EEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34455555565444566677778899999999999999999886664
No 442
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.51 E-value=0.0076 Score=51.12 Aligned_cols=25 Identities=40% Similarity=0.697 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHH
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+..|+.++|+||+||||||++..+.
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHT
T ss_pred EcCCCEEEEEccCCCccccceeeec
Confidence 5689999999999999999986554
No 443
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.50 E-value=0.0015 Score=62.39 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=36.8
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.+..++..+..+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 11 l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 57 (264)
T PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFN 57 (264)
T ss_pred EEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 44555666665545667777888999999999999999999987665
No 444
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.50 E-value=0.0013 Score=64.22 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=36.4
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.++.|+-....+.+...+.+|+.+.+.||+||||||++-.+.-
T Consensus 5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred EEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 344555666655456677777889999999999999999998866653
No 445
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.48 E-value=0.0012 Score=63.38 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=35.6
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+....++.....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 14 l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 14 ISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred EEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 344455555554445566777788999999999999999999866653
No 446
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.0017 Score=61.10 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=31.9
Q ss_pred hhccCCC-HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 9 QRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 9 ~~~~l~~-~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
....++- ....+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 6 l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 6 LSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred EEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3344443 335566667788999999999999999998866653
No 447
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.47 E-value=0.0017 Score=59.35 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=32.5
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+..++-....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 5 ELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred EEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 33444444445566667788999999999999999999866543
No 448
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.0012 Score=61.90 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=34.9
Q ss_pred hhHHHhhccCCC----HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~----~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++. .+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344555555543 235566667788999999999999999998866653
No 449
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.45 E-value=0.0014 Score=61.15 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=35.0
Q ss_pred hhHHHhhccCCC----HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~----~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++. .+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 7 l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred EEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 445555555543 124566667788999999999999999998866653
No 450
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.45 E-value=0.0012 Score=60.11 Aligned_cols=42 Identities=24% Similarity=0.145 Sum_probs=30.8
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..++.....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 7 ~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 7 ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred EEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 333433334556666788999999999999999998866543
No 451
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.45 E-value=0.019 Score=57.00 Aligned_cols=24 Identities=38% Similarity=0.779 Sum_probs=19.9
Q ss_pred hcCCEEEEEcCCCCchhchHHHHH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+..++|+|||||||||++..++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~ 143 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMI 143 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999998886544
No 452
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.44 E-value=0.068 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+++|.||+|+|||+++-.++.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999887666543
No 453
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.0068 Score=61.46 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=37.9
Q ss_pred hhHHHhhccCCCHH--HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIAS--VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~--~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..||-.+ ..+.+...+.+|+.+.|.|+|||||||++.+..-
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 34556666666544 7788888899999999999999999998866653
No 454
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.0015 Score=62.82 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=35.0
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+....++-....+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 21 l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 21 FEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred EEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44455555555434556677778899999999999999999886665
No 455
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.43 E-value=0.054 Score=56.33 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=21.5
Q ss_pred HHHhcCC---EEEEEcCCCCchhchHHHHHhh
Q 010422 24 EEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 24 ~~l~~~~---~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+..++ .++++||.|+||||++-.+...
T Consensus 35 ~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 35 YTILNDRLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3355565 6899999999999887665543
No 456
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.43 E-value=0.021 Score=57.00 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=19.3
Q ss_pred hcCCEEEEEcCCCCchhchHHHHH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+..++|+|||||||||++..++
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~ 170 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIY 170 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHH
Confidence 356688999999999998885543
No 457
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.42 E-value=0.019 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=18.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+..-++|+|||||||||.+..++
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamI 146 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMI 146 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHH
Confidence 44578999999999997765554
No 458
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.40 E-value=0.0015 Score=62.05 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=36.3
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+.+..++-....+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445555555554445566777788999999999999999999876653
No 459
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.039 Score=60.32 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCC---EEEEEcCCCCchhchHHHHHhh
Q 010422 19 EKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 19 q~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+.+...+..++ -++++||.|+||||++-.+...
T Consensus 25 v~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 25 LHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 333444555553 3589999999999887666543
No 460
>PRK09087 hypothetical protein; Validated
Probab=95.38 E-value=0.032 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCCchhchHHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l 50 (511)
+..+++.||+|||||+++-.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4458999999999998885443
No 461
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=95.38 E-value=0.0061 Score=66.16 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHhhccCCC-HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 7 LQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 7 ~~~~~~l~~-~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+..+|. .+..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 455 ~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~G 500 (659)
T TIGR00954 455 ENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE 500 (659)
T ss_pred EeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 334444442 235566666778999999999999999998866653
No 462
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.37 E-value=0.038 Score=52.61 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=24.5
Q ss_pred HHHHHHHHHH-Hh-cCCEEEEEcCCCCchhchHHHHHh
Q 010422 16 ASVEKRLVEE-VR-KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 16 ~~~q~~~~~~-l~-~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+.+.+.. +. .+..++|+|||||||||++..++.
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~ 102 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHh
Confidence 3444444444 33 455899999999999998865543
No 463
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.36 E-value=0.0023 Score=61.25 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=36.3
Q ss_pred hhhHHHhhccCC---------CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLP---------IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~---------~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+..+.|+ ..+..+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 61 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 345556665553 1245667777889999999999999999998866653
No 464
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.36 E-value=0.0099 Score=63.70 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+.+...+.+|+.+.|+|++||||||++-.++-
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g 380 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPR 380 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556666778999999999999999999876653
No 465
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.043 Score=57.32 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCC---EEEEEcCCCCchhchHHHHHh
Q 010422 16 ASVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+.+.+...+..++ .++++||.|+||||++-.+..
T Consensus 22 ~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 22 APVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 334445555555553 368999999999988755543
No 466
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.0016 Score=62.49 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=35.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++-.+..+.+...+.+|+.+.|.|++||||||++-.+.-
T Consensus 25 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred EEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344455555554445566666788999999999999999998876653
No 467
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.0045 Score=59.36 Aligned_cols=43 Identities=28% Similarity=0.303 Sum_probs=31.1
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+.+....+.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 30 ~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred hhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3334444344555666778999999999999999999866543
No 468
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.0014 Score=62.71 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=35.9
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++..+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 21 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 21 LSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred EEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344555555554455666777788999999999999999998876653
No 469
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.33 E-value=0.0018 Score=60.29 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4566777788999999999999999999876653
No 470
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.32 E-value=0.026 Score=54.44 Aligned_cols=45 Identities=24% Similarity=0.166 Sum_probs=31.1
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHH
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l 71 (511)
..+....+++|+|.|||||||++..+...-.. ..+++++.-+.++
T Consensus 168 ~av~~r~NILisGGTGSGKTTlLNal~~~i~~---~eRvItiEDtaEL 212 (355)
T COG4962 168 RAVGIRCNILISGGTGSGKTTLLNALSGFIDS---DERVITIEDTAEL 212 (355)
T ss_pred HHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC---cccEEEEeehhhh
Confidence 34455569999999999999998666544332 2367777655544
No 471
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.31 E-value=0.044 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCchhchHHHHHhhc
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+++++.|||||||||++-.+.-..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 689999999999999887666433
No 472
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.31 E-value=0.0023 Score=60.85 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=37.6
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+..+.++-....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345556666676666667777778899999999999999999886655
No 473
>PRK10436 hypothetical protein; Provisional
Probab=95.30 E-value=0.037 Score=56.92 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHH--hcCCEEEEEcCCCCchhchHHHHH
Q 010422 15 IASVEKRLVEEV--RKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 15 ~~~~q~~~~~~l--~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+.+.+..+ ..+..++|+|||||||||.+..++
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l 239 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSAL 239 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHH
Confidence 334444444443 356689999999999998774443
No 474
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.30 E-value=0.0013 Score=62.39 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=33.5
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+....++-....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 5 ~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 5 DARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred EEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444455554434445566678899999999999999999987664
No 475
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.29 E-value=0.0015 Score=62.45 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=35.5
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+.+..++-....+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 9 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (265)
T PRK10253 9 RGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS 54 (265)
T ss_pred EEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 3445556666545667777888999999999999999999886554
No 476
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.29 E-value=0.041 Score=57.97 Aligned_cols=36 Identities=31% Similarity=0.268 Sum_probs=23.8
Q ss_pred EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
.++|.|++|+|||.++-.+.........+..++++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 489999999999977655544332222345666665
No 477
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.28 E-value=0.0017 Score=60.35 Aligned_cols=34 Identities=38% Similarity=0.440 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4556667788999999999999999999866653
No 478
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.0015 Score=62.10 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=36.1
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+....++..+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (255)
T PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred EEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 445555666654455666777788999999999999999999865553
No 479
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.0016 Score=62.58 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=36.8
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..|+-..+.+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 22 l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred EEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345556666665555667777788999999999999999998876653
No 480
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.27 E-value=0.0021 Score=68.45 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=41.4
Q ss_pred hhhHHHhhccCC-CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 3 RQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 3 ~~~~~~~~~~l~-~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++++.+.+..|+ -..+.+.+...+..|+.+.|+||+||||||++-.+.-.
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 677788888886 45677788888999999999999999999998776543
No 481
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.26 E-value=0.0011 Score=69.76 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=37.3
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+..+.|+-....+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 51 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLT 51 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 355566666665445667777788999999999999999999986665
No 482
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.002 Score=61.19 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=36.5
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 52 (252)
T PRK14272 5 LSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINR 52 (252)
T ss_pred EEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 344555566654456677777889999999999999999998876654
No 483
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.058 Score=57.58 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCC---EEEEEcCCCCchhchHHHHHhh
Q 010422 17 SVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 17 ~~q~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~~ 52 (511)
...+.+...+..++ .++++||.|+||||++-.+...
T Consensus 23 ~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 23 HVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34444555566664 5799999999999887655443
No 484
>PLN03232 ABC transporter C family member; Provisional
Probab=95.24 E-value=0.0037 Score=73.97 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=34.0
Q ss_pred HHhhccCCC--HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 7 LQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 7 ~~~~~~l~~--~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+....|++ .++.+++...+.+|+.+.|+|+|||||||++-.++-
T Consensus 1238 ~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r 1284 (1495)
T PLN03232 1238 EDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR 1284 (1495)
T ss_pred EEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 333444533 246777888889999999999999999998866653
No 485
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.24 E-value=0.032 Score=48.89 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+++..+|+||+|||||+++-...+.
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999887655443
No 486
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.23 E-value=0.0024 Score=60.74 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=34.0
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..+ -.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 5 IELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred EEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445555555 2234556667788999999999999999998866653
No 487
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.22 E-value=0.002 Score=61.16 Aligned_cols=47 Identities=28% Similarity=0.304 Sum_probs=35.0
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+....++-....+.+...+..|+.+.|+||+||||||++-.+.
T Consensus 8 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (252)
T CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA 54 (252)
T ss_pred EEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 34445555555444566677778999999999999999999986554
No 488
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.056 Score=57.14 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCC---EEEEEcCCCCchhchHHHHHhh
Q 010422 16 ASVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+.+.+...+.+++ -++++||.|+||||++-.+...
T Consensus 22 e~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 22 EHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 444555666666665 4689999999999887665543
No 489
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.21 E-value=0.0017 Score=62.11 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=35.5
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.+..++-..+.+.+...+..|+.+.|.||+||||||++-.+.
T Consensus 12 l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 12 FALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred EEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 34455555555445566777788899999999999999999886554
No 490
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=95.21 E-value=0.00038 Score=82.73 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+.+...+.+|+.+.+.||+||||||++-.+.-.
T Consensus 1954 aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl 1988 (2272)
T TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD 1988 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC
Confidence 45556667789999999999999999998776643
No 491
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.0013 Score=69.41 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=38.2
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.++.|+-..+.+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~ 52 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLS 52 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 456667777776555667778888999999999999999999986654
No 492
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.0022 Score=67.51 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=39.0
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+.++.|+-..+.+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 4566677777765556677788889999999999999999999876653
No 493
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.19 E-value=0.002 Score=61.18 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=35.4
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+....++-.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 5 l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14249 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNR 52 (251)
T ss_pred EEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444555555554445566667788999999999999999999876653
No 494
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.0015 Score=59.12 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=32.7
Q ss_pred HHHhhccCCC----HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 6 ILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 6 ~~~~~~~l~~----~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+....++. .+..+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 3444445542 23455666677899999999999999999887665
No 495
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.17 E-value=0.0018 Score=60.30 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=31.2
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..++-..+.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 6 v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3344443344555666678999999999999999999866553
No 496
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.002 Score=60.82 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=31.7
Q ss_pred hhccCCC-HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 9 QRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 9 ~~~~l~~-~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..++. .++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 6 l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 6 VTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred EEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3344443 334556667788999999999999999998866653
No 497
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.15 E-value=0.014 Score=64.08 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+.+...+.+|+.+.|+|++||||||++-.+.-.
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56667777889999999999999999988776543
No 498
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.14 E-value=0.0013 Score=63.05 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=33.8
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+....++-.++.+.+...+..|+.+.|.||+||||||++-.+.-
T Consensus 21 ~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 67 (267)
T PRK14235 21 RARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR 67 (267)
T ss_pred EEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33444455543334455666788999999999999999999876653
No 499
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.14 E-value=0.0016 Score=61.75 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=34.5
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.+..++-.+..+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN 50 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 34445555554334556666678899999999999999999886665
No 500
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.12 E-value=0.16 Score=47.06 Aligned_cols=113 Identities=24% Similarity=0.255 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCC-EEEEEcCCCCchhchHHHHHhhccccCCCeEE-EEeCccHHHHHHHHHHHHHHhCCccCCeeeEEE
Q 010422 18 VEKRLVEEVRKND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI-GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI 95 (511)
Q Consensus 18 ~q~~~~~~l~~~~-~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i-~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~ 95 (511)
....+...+..|+ .+.++|+-|||||+..- ++...... +...+ ++-.|+-..+......+..... +
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~-~--------- 106 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLNE-DQVAVVVIDKPTLSDATLLEAIVADLES-Q--------- 106 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcCC-CceEEEEecCcchhHHHHHHHHHHHhcc-C---------
Confidence 3345555677777 89999999999997765 44333322 22233 3333443333333333333221 1
Q ss_pred eecccCChh---hhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHH
Q 010422 96 RFDDRTSTS---TRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (511)
Q Consensus 96 ~~~~~~~~~---~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~ 145 (511)
...... ..+.+.+.. ...+.--.+++||+|.-.......+.++-...
T Consensus 107 ---p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~ 158 (269)
T COG3267 107 ---PKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLE 158 (269)
T ss_pred ---ccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhc
Confidence 111111 111211111 11222246899999977666666655555443
Done!