Query 010422
Match_columns 511
No_of_seqs 335 out of 2930
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 06:28:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 2E-73 6.8E-78 617.3 45.0 460 4-505 84-561 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 6.7E-53 2.3E-57 459.1 20.5 438 13-505 29-550 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-52 7.4E-57 453.7 23.5 430 14-504 25-529 (702)
4 2zj8_A DNA helicase, putative 100.0 2.5E-51 8.6E-56 446.6 13.6 442 5-505 14-535 (720)
5 4f92_B U5 small nuclear ribonu 100.0 2.1E-42 7.3E-47 399.3 30.0 442 15-505 927-1464(1724)
6 4f92_B U5 small nuclear ribonu 100.0 8.8E-42 3E-46 394.2 27.7 441 15-504 80-632 (1724)
7 2db3_A ATP-dependent RNA helic 100.0 4.1E-39 1.4E-43 329.9 19.7 306 9-387 73-407 (434)
8 3fht_A ATP-dependent RNA helic 100.0 2.5E-38 8.5E-43 322.5 24.8 317 7-388 40-380 (412)
9 3eiq_A Eukaryotic initiation f 100.0 7.8E-40 2.7E-44 333.9 13.2 313 6-391 54-391 (414)
10 3pey_A ATP-dependent RNA helic 100.0 1.3E-37 4.6E-42 315.1 26.5 318 5-388 18-357 (395)
11 2i4i_A ATP-dependent RNA helic 100.0 2.1E-38 7.1E-43 323.7 19.1 316 6-391 29-387 (417)
12 2j0s_A ATP-dependent RNA helic 100.0 2.7E-38 9.2E-43 322.2 19.2 308 11-391 56-387 (410)
13 1hv8_A Putative ATP-dependent 100.0 1.5E-37 5.1E-42 311.5 23.4 310 6-391 20-349 (367)
14 3l9o_A ATP-dependent RNA helic 100.0 2.7E-39 9.2E-44 361.7 11.4 319 10-387 180-597 (1108)
15 2v1x_A ATP-dependent DNA helic 100.0 7.9E-38 2.7E-42 329.8 20.1 304 13-391 43-378 (591)
16 1xti_A Probable ATP-dependent 100.0 4.5E-37 1.6E-41 311.0 24.8 307 11-389 27-359 (391)
17 2xgj_A ATP-dependent RNA helic 100.0 4E-38 1.4E-42 349.3 17.7 322 11-387 83-499 (1010)
18 1s2m_A Putative ATP-dependent 100.0 4.6E-37 1.6E-41 312.0 22.8 305 13-391 42-369 (400)
19 3fmp_B ATP-dependent RNA helic 100.0 4.1E-38 1.4E-42 327.3 14.9 317 7-388 107-447 (479)
20 3o8b_A HCV NS3 protease/helica 100.0 5.3E-38 1.8E-42 329.0 13.9 301 5-390 208-517 (666)
21 4a4z_A Antiviral helicase SKI2 100.0 1.1E-38 3.8E-43 353.8 8.9 318 11-385 36-490 (997)
22 3i5x_A ATP-dependent RNA helic 100.0 2.4E-36 8.3E-41 320.3 25.0 319 11-390 91-452 (563)
23 1oyw_A RECQ helicase, ATP-depe 100.0 7.8E-37 2.7E-41 319.0 20.1 292 14-391 25-347 (523)
24 2z83_A Helicase/nucleoside tri 100.0 3.2E-37 1.1E-41 317.2 16.1 289 18-387 10-313 (459)
25 3sqw_A ATP-dependent RNA helic 100.0 5.1E-36 1.7E-40 318.3 24.3 317 12-390 41-401 (579)
26 1fuu_A Yeast initiation factor 100.0 1.3E-37 4.6E-42 315.1 10.8 311 9-392 38-371 (394)
27 2jlq_A Serine protease subunit 100.0 3.8E-37 1.3E-41 316.2 10.4 287 17-385 7-309 (451)
28 2z0m_A 337AA long hypothetical 100.0 1.2E-35 4E-40 294.3 18.8 296 5-385 7-321 (337)
29 2whx_A Serine protease/ntpase/ 100.0 1.9E-36 6.5E-41 320.3 11.5 292 10-385 170-476 (618)
30 1yks_A Genome polyprotein [con 100.0 5.6E-36 1.9E-40 306.1 14.2 281 25-385 4-297 (440)
31 3fho_A ATP-dependent RNA helic 100.0 1.1E-36 3.9E-41 317.7 8.7 309 14-387 141-470 (508)
32 3rc3_A ATP-dependent RNA helic 100.0 4.7E-36 1.6E-40 318.1 13.0 310 27-416 153-476 (677)
33 3oiy_A Reverse gyrase helicase 100.0 2E-35 6.9E-40 301.3 15.6 309 5-387 12-365 (414)
34 2ykg_A Probable ATP-dependent 100.0 6.2E-36 2.1E-40 325.2 11.7 138 252-413 396-552 (696)
35 2v6i_A RNA helicase; membrane, 100.0 1E-34 3.4E-39 296.2 15.7 275 28-384 1-287 (431)
36 2wv9_A Flavivirin protease NS2 100.0 3.4E-35 1.2E-39 312.5 11.1 290 15-385 216-531 (673)
37 4a2p_A RIG-I, retinoic acid in 100.0 2.5E-34 8.6E-39 304.5 17.7 120 252-390 388-511 (556)
38 1wp9_A ATP-dependent RNA helic 100.0 3.4E-33 1.1E-37 290.4 18.8 112 252-390 359-478 (494)
39 3tbk_A RIG-I helicase domain; 100.0 3.6E-33 1.2E-37 295.4 17.2 120 252-390 387-510 (555)
40 4a2q_A RIG-I, retinoic acid in 100.0 7.8E-33 2.7E-37 304.0 18.8 120 252-390 629-752 (797)
41 2eyq_A TRCF, transcription-rep 100.0 1E-31 3.6E-36 302.2 24.4 298 10-387 599-922 (1151)
42 1gm5_A RECG; helicase, replica 100.0 1.7E-32 5.8E-37 295.2 12.6 295 10-385 364-695 (780)
43 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-31 4.5E-36 297.3 18.1 119 252-389 629-751 (936)
44 4gl2_A Interferon-induced heli 100.0 2.1E-32 7.3E-37 297.5 11.5 110 254-385 400-517 (699)
45 4ddu_A Reverse gyrase; topoiso 100.0 6E-32 2E-36 302.3 12.7 277 10-342 74-388 (1104)
46 2fwr_A DNA repair protein RAD2 100.0 1.1E-30 3.7E-35 270.9 6.9 286 12-387 91-454 (472)
47 1gku_B Reverse gyrase, TOP-RG; 100.0 1.5E-29 5.1E-34 283.2 15.0 270 10-341 53-352 (1054)
48 2oca_A DAR protein, ATP-depend 100.0 5.9E-30 2E-34 268.0 7.5 297 12-385 111-453 (510)
49 1tf5_A Preprotein translocase 100.0 5.8E-28 2E-32 255.3 21.1 337 11-388 80-546 (844)
50 3h1t_A Type I site-specific re 99.9 1.5E-27 5E-32 254.0 14.9 299 13-377 177-545 (590)
51 2fsf_A Preprotein translocase 99.9 1.4E-26 4.8E-31 244.0 21.4 165 193-388 378-584 (853)
52 3eaq_A Heat resistant RNA depe 99.9 5.7E-28 2E-32 222.2 7.3 171 244-441 21-211 (212)
53 1nkt_A Preprotein translocase 99.9 2.6E-25 8.8E-30 234.7 23.5 341 10-388 107-618 (922)
54 3i32_A Heat resistant RNA depe 99.9 4.5E-27 1.5E-31 226.3 3.2 189 227-446 5-213 (300)
55 3dmq_A RNA polymerase-associat 99.9 3E-25 1E-29 246.8 13.5 119 242-386 491-614 (968)
56 3jux_A Protein translocase sub 99.9 1.2E-22 4.1E-27 209.9 20.9 165 192-388 410-588 (822)
57 1c4o_A DNA nucleotide excision 99.9 3.1E-22 1.1E-26 213.8 24.0 167 191-387 380-550 (664)
58 1z63_A Helicase of the SNF2/RA 99.9 4.9E-23 1.7E-27 214.9 13.5 110 253-388 340-454 (500)
59 3llm_A ATP-dependent RNA helic 99.9 1.2E-22 4.2E-27 190.0 13.9 172 5-218 52-235 (235)
60 2rb4_A ATP-dependent RNA helic 99.9 8.4E-23 2.9E-27 182.0 11.5 129 241-390 21-150 (175)
61 2hjv_A ATP-dependent RNA helic 99.9 7E-23 2.4E-27 180.2 10.4 136 225-391 10-146 (163)
62 1fuk_A Eukaryotic initiation f 99.9 1.1E-22 3.9E-27 179.3 8.3 117 247-390 23-140 (165)
63 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.5E-21 5E-26 215.7 18.8 306 13-385 270-707 (1038)
64 1t5i_A C_terminal domain of A 99.9 1.7E-22 5.7E-27 179.3 8.5 132 225-387 6-138 (172)
65 1z3i_X Similar to RAD54-like; 99.9 4E-21 1.4E-25 205.3 19.3 110 252-388 414-529 (644)
66 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.9E-22 1.7E-26 178.3 9.5 111 253-390 45-156 (185)
67 2p6n_A ATP-dependent RNA helic 99.9 1.3E-21 4.5E-26 176.3 10.2 116 244-387 45-161 (191)
68 2yjt_D ATP-dependent RNA helic 99.7 1.2E-22 4.1E-27 180.1 0.0 120 245-391 21-141 (170)
69 2d7d_A Uvrabc system protein B 99.8 6.5E-20 2.2E-24 195.7 17.4 167 191-387 386-556 (661)
70 3mwy_W Chromo domain-containin 99.8 2.4E-20 8.1E-25 204.4 11.7 111 253-390 571-687 (800)
71 3iuy_A Probable ATP-dependent 99.7 1.4E-16 4.9E-21 148.0 12.4 119 9-129 37-178 (228)
72 1qde_A EIF4A, translation init 99.7 3E-16 1E-20 145.4 11.6 123 7-130 29-167 (224)
73 1q0u_A Bstdead; DEAD protein, 99.7 3.5E-16 1.2E-20 144.4 12.0 126 5-130 17-162 (219)
74 2pl3_A Probable ATP-dependent 99.7 1.8E-16 6.3E-21 148.1 10.0 122 7-129 40-182 (236)
75 2oxc_A Probable ATP-dependent 99.7 2.7E-16 9.3E-21 146.3 11.0 119 12-130 44-178 (230)
76 3ly5_A ATP-dependent RNA helic 99.7 1.2E-16 4E-21 151.7 8.6 118 11-129 73-212 (262)
77 2gxq_A Heat resistant RNA depe 99.7 4.3E-16 1.5E-20 142.4 11.9 120 7-129 16-155 (207)
78 3fmo_B ATP-dependent RNA helic 99.7 3.3E-16 1.1E-20 151.5 11.5 124 7-130 107-247 (300)
79 3ber_A Probable ATP-dependent 99.6 3.7E-16 1.3E-20 147.1 10.9 124 5-129 56-197 (249)
80 3fe2_A Probable ATP-dependent 99.6 3E-16 1E-20 147.2 10.2 166 11-219 48-238 (242)
81 1vec_A ATP-dependent RNA helic 99.6 4.9E-16 1.7E-20 141.9 10.8 121 10-130 21-158 (206)
82 3bor_A Human initiation factor 99.6 4.8E-16 1.7E-20 145.3 10.8 119 11-130 49-185 (237)
83 1t6n_A Probable ATP-dependent 99.6 3.7E-15 1.2E-19 137.6 16.4 118 14-131 36-171 (220)
84 3dkp_A Probable ATP-dependent 99.6 8.9E-16 3E-20 144.3 11.6 121 11-132 48-189 (245)
85 3i4u_A ATP-dependent RNA helic 99.6 1E-15 3.6E-20 143.9 9.2 85 421-506 6-91 (270)
86 1wrb_A DJVLGB; RNA helicase, D 99.6 1.8E-15 6.1E-20 142.9 9.5 118 11-129 42-185 (253)
87 2ipc_A Preprotein translocase 99.5 2.7E-13 9.2E-18 143.2 21.5 115 10-129 75-213 (997)
88 1z5z_A Helicase of the SNF2/RA 99.5 7E-15 2.4E-19 139.5 6.1 111 253-389 111-226 (271)
89 2vl7_A XPD; helicase, unknown 99.5 4.8E-14 1.7E-18 147.4 11.5 128 239-383 370-518 (540)
90 3b6e_A Interferon-induced heli 99.5 7.7E-14 2.6E-18 128.1 7.6 120 10-131 29-175 (216)
91 1rif_A DAR protein, DNA helica 99.3 1.9E-12 6.4E-17 124.1 6.3 117 13-131 112-238 (282)
92 2fz4_A DNA repair protein RAD2 99.3 2.2E-12 7.5E-17 120.1 6.0 109 12-130 91-204 (237)
93 3crv_A XPD/RAD3 related DNA he 99.2 9.7E-11 3.3E-15 122.8 16.6 173 192-383 316-528 (551)
94 1w36_D RECD, exodeoxyribonucle 98.0 1.2E-05 4.2E-10 84.8 8.4 65 16-80 151-217 (608)
95 3e1s_A Exodeoxyribonuclease V, 97.6 9E-05 3.1E-09 77.4 8.2 64 13-78 188-251 (574)
96 4a15_A XPD helicase, ATP-depen 97.5 8.6E-05 3E-09 78.4 6.7 175 193-383 377-581 (620)
97 4a15_A XPD helicase, ATP-depen 97.5 0.0001 3.6E-09 77.8 7.2 69 13-82 2-74 (620)
98 3upu_A ATP-dependent DNA helic 97.4 0.00025 8.5E-09 72.3 8.2 64 15-79 26-94 (459)
99 3kl4_A SRP54, signal recogniti 97.2 0.0012 4E-08 66.0 10.0 94 29-129 97-190 (433)
100 2b8t_A Thymidine kinase; deoxy 97.2 0.00022 7.4E-09 64.8 3.9 41 27-69 10-50 (223)
101 2orw_A Thymidine kinase; TMTK, 97.1 0.00055 1.9E-08 60.3 5.5 40 28-69 2-41 (184)
102 4b3f_X DNA-binding protein smu 97.1 0.00075 2.6E-08 71.9 7.3 65 15-81 190-255 (646)
103 2kjq_A DNAA-related protein; s 97.1 0.00018 6.2E-09 61.0 2.0 24 28-51 35-58 (149)
104 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.0011 3.9E-08 64.1 6.0 90 18-128 160-250 (330)
105 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0019 6.4E-08 58.8 7.0 34 20-53 13-47 (235)
106 2gk6_A Regulator of nonsense t 96.8 0.0021 7.2E-08 68.0 7.6 66 15-81 181-246 (624)
107 3tui_C Methionine import ATP-b 96.7 0.0011 3.9E-08 64.5 5.0 33 19-51 44-76 (366)
108 1vma_A Cell division protein F 96.7 0.0028 9.5E-08 60.5 7.5 108 28-144 103-211 (306)
109 3dm5_A SRP54, signal recogniti 96.7 0.004 1.4E-07 62.2 8.8 93 29-128 100-192 (443)
110 1xx6_A Thymidine kinase; NESG, 96.7 0.00098 3.3E-08 58.9 3.8 41 27-69 6-46 (191)
111 3jvv_A Twitching mobility prot 96.7 0.0019 6.4E-08 63.1 6.1 26 26-51 120-145 (356)
112 2v9p_A Replication protein E1; 96.6 0.00063 2.2E-08 64.7 2.1 37 16-52 113-149 (305)
113 2px0_A Flagellar biosynthesis 96.6 0.0029 1E-07 60.1 6.4 26 28-53 104-129 (296)
114 1l8q_A Chromosomal replication 96.6 0.0054 1.8E-07 59.2 8.3 23 29-51 37-59 (324)
115 3te6_A Regulatory protein SIR3 96.5 0.0037 1.3E-07 59.8 6.9 25 28-52 44-68 (318)
116 2xzl_A ATP-dependent helicase 96.5 0.0027 9.2E-08 68.9 6.4 66 15-81 361-426 (802)
117 2wjy_A Regulator of nonsense t 96.5 0.0038 1.3E-07 67.7 7.5 66 15-81 357-422 (800)
118 3cpe_A Terminase, DNA packagin 96.5 0.0045 1.5E-07 65.0 7.6 72 12-83 161-232 (592)
119 2j9r_A Thymidine kinase; TK1, 96.5 0.003 1E-07 56.4 5.3 41 28-70 27-67 (214)
120 3b85_A Phosphate starvation-in 96.4 0.0025 8.5E-08 57.2 4.5 33 19-51 12-44 (208)
121 3e70_C DPA, signal recognition 96.4 0.0058 2E-07 58.8 7.4 25 28-52 128-152 (328)
122 3b9q_A Chloroplast SRP recepto 96.4 0.0073 2.5E-07 57.5 8.0 25 28-52 99-123 (302)
123 1htw_A HI0065; nucleotide-bind 96.3 0.0013 4.4E-08 56.3 1.8 35 18-52 22-56 (158)
124 1vpl_A ABC transporter, ATP-bi 96.3 5.4E-05 1.8E-09 70.5 -7.5 50 1-50 13-62 (256)
125 3h4m_A Proteasome-activating n 96.2 0.014 4.8E-07 54.9 8.6 25 27-51 49-73 (285)
126 2eyu_A Twitching motility prot 96.1 0.0022 7.4E-08 59.9 2.7 33 17-51 15-47 (261)
127 2d2e_A SUFC protein; ABC-ATPas 96.1 7.3E-05 2.5E-09 69.5 -7.3 48 4-51 4-51 (250)
128 2og2_A Putative signal recogni 96.1 0.011 3.9E-07 57.5 7.7 25 28-52 156-180 (359)
129 3lnc_A Guanylate kinase, GMP k 96.1 0.0014 4.9E-08 59.9 1.1 34 17-50 15-48 (231)
130 1z6g_A Guanylate kinase; struc 96.1 0.0026 8.8E-08 57.6 2.8 33 19-51 13-45 (218)
131 2cbz_A Multidrug resistance-as 96.1 0.0001 3.5E-09 67.9 -6.7 48 3-50 3-52 (237)
132 2gza_A Type IV secretion syste 96.1 0.0034 1.2E-07 61.5 3.8 33 20-52 166-198 (361)
133 3vkw_A Replicase large subunit 96.0 0.0036 1.2E-07 62.3 3.9 83 28-129 160-245 (446)
134 2pcj_A ABC transporter, lipopr 96.0 7.3E-05 2.5E-09 68.3 -7.9 47 4-50 5-51 (224)
135 4g1u_C Hemin import ATP-bindin 96.0 9.1E-05 3.1E-09 69.5 -7.5 47 4-50 12-58 (266)
136 2yhs_A FTSY, cell division pro 96.0 0.0052 1.8E-07 62.1 4.8 24 28-51 292-315 (503)
137 1g6h_A High-affinity branched- 96.0 9.3E-05 3.2E-09 69.1 -7.5 47 4-50 8-54 (257)
138 3rlf_A Maltose/maltodextrin im 96.0 0.00012 3.9E-09 72.0 -7.2 50 1-50 1-50 (381)
139 3nwj_A ATSK2; P loop, shikimat 95.9 0.0037 1.3E-07 57.8 3.3 49 3-51 17-70 (250)
140 1zu4_A FTSY; GTPase, signal re 95.9 0.0083 2.8E-07 57.6 5.7 25 28-52 104-128 (320)
141 4gp7_A Metallophosphoesterase; 95.9 0.0021 7.3E-08 55.7 1.4 23 26-48 6-28 (171)
142 1znw_A Guanylate kinase, GMP k 95.9 0.0039 1.4E-07 55.8 3.2 27 24-50 15-41 (207)
143 3ec2_A DNA replication protein 95.9 0.0063 2.2E-07 53.0 4.5 37 16-52 16-61 (180)
144 1w4r_A Thymidine kinase; type 95.9 0.0042 1.4E-07 54.5 3.2 39 28-68 19-57 (195)
145 1ls1_A Signal recognition part 95.9 0.022 7.7E-07 53.9 8.5 94 28-128 97-190 (295)
146 2oap_1 GSPE-2, type II secreti 95.9 0.0053 1.8E-07 63.0 4.3 34 17-50 248-281 (511)
147 3tr0_A Guanylate kinase, GMP k 95.8 0.0045 1.5E-07 55.2 3.1 26 26-51 4-29 (205)
148 2orv_A Thymidine kinase; TP4A 95.8 0.0082 2.8E-07 54.1 4.6 40 28-69 18-57 (234)
149 1sxj_A Activator 1 95 kDa subu 95.7 0.02 6.7E-07 59.1 8.0 24 30-53 78-101 (516)
150 1kgd_A CASK, peripheral plasma 95.7 0.0054 1.8E-07 53.6 3.3 25 27-51 3-27 (180)
151 2it1_A 362AA long hypothetical 95.7 0.00021 7.2E-09 69.8 -6.5 50 1-50 1-50 (362)
152 2z4s_A Chromosomal replication 95.7 0.02 7E-07 57.6 7.8 23 29-51 130-152 (440)
153 3lfu_A DNA helicase II; SF1 he 95.7 0.01 3.6E-07 63.0 5.8 70 14-85 9-80 (647)
154 2yyz_A Sugar ABC transporter, 95.7 0.00018 6.2E-09 70.2 -7.2 48 3-50 3-50 (359)
155 1d2n_A N-ethylmaleimide-sensit 95.6 0.0078 2.7E-07 56.4 4.3 23 30-52 65-87 (272)
156 3fvq_A Fe(3+) IONS import ATP- 95.6 0.00017 5.7E-09 70.3 -7.5 49 3-51 4-52 (359)
157 1fnn_A CDC6P, cell division co 95.6 0.022 7.5E-07 56.1 7.7 44 428-472 329-376 (389)
158 1v43_A Sugar-binding transport 95.6 0.00021 7.3E-09 70.1 -7.0 48 3-50 11-58 (372)
159 3pfi_A Holliday junction ATP-d 95.5 0.089 3E-06 50.7 11.5 21 30-50 56-76 (338)
160 1lvg_A Guanylate kinase, GMP k 95.5 0.0058 2E-07 54.3 2.6 25 27-51 2-26 (198)
161 3hgt_A HDA1 complex subunit 3; 95.5 0.071 2.4E-06 50.6 10.1 119 241-391 113-241 (328)
162 3tif_A Uncharacterized ABC tra 95.5 0.0051 1.7E-07 56.3 2.3 30 21-50 23-52 (235)
163 1g29_1 MALK, maltose transport 95.5 0.00022 7.4E-09 70.1 -7.5 47 4-50 4-50 (372)
164 2v1u_A Cell division control p 95.4 0.017 5.8E-07 56.8 6.1 49 427-476 328-378 (387)
165 1zp6_A Hypothetical protein AT 95.4 0.0052 1.8E-07 54.1 2.1 27 25-51 5-31 (191)
166 3vfd_A Spastin; ATPase, microt 95.4 0.03 1E-06 55.4 7.8 24 29-52 148-171 (389)
167 2ehv_A Hypothetical protein PH 95.4 0.011 3.7E-07 54.4 4.3 26 25-50 26-51 (251)
168 1oxx_K GLCV, glucose, ABC tran 95.4 0.00018 6.3E-09 70.1 -8.2 50 1-50 1-52 (353)
169 2j41_A Guanylate kinase; GMP, 95.3 0.0081 2.8E-07 53.5 3.0 27 25-51 2-28 (207)
170 2zpa_A Uncharacterized protein 95.3 0.025 8.6E-07 59.3 7.0 59 15-78 176-236 (671)
171 1s96_A Guanylate kinase, GMP k 95.3 0.0091 3.1E-07 54.0 3.3 27 25-51 12-38 (219)
172 3vaa_A Shikimate kinase, SK; s 95.3 0.0092 3.1E-07 53.0 3.3 35 18-52 14-48 (199)
173 1sq5_A Pantothenate kinase; P- 95.3 0.011 3.8E-07 56.5 4.0 25 27-51 78-102 (308)
174 2npi_A Protein CLP1; CLP1-PCF1 95.2 0.0074 2.5E-07 61.0 2.7 42 3-50 118-159 (460)
175 3gfo_A Cobalt import ATP-bindi 95.2 0.0067 2.3E-07 56.9 2.2 48 3-50 7-55 (275)
176 3tau_A Guanylate kinase, GMP k 95.2 0.01 3.5E-07 53.2 3.3 26 27-52 6-31 (208)
177 2qby_B CDC6 homolog 3, cell di 95.2 0.035 1.2E-06 54.5 7.6 48 427-475 316-365 (384)
178 1cr0_A DNA primase/helicase; R 95.2 0.0083 2.8E-07 57.0 2.7 39 16-54 22-60 (296)
179 2qm8_A GTPase/ATPase; G protei 95.1 0.0038 1.3E-07 60.6 0.2 34 18-51 44-77 (337)
180 1p9r_A General secretion pathw 95.1 0.008 2.7E-07 59.9 2.6 26 27-52 165-190 (418)
181 3aez_A Pantothenate kinase; tr 95.1 0.015 5.2E-07 55.6 4.4 25 26-50 87-111 (312)
182 1sgw_A Putative ABC transporte 95.1 0.007 2.4E-07 54.4 1.8 42 8-50 15-56 (214)
183 3a00_A Guanylate kinase, GMP k 95.1 0.0096 3.3E-07 52.2 2.7 23 29-51 1-23 (186)
184 2pze_A Cystic fibrosis transme 95.1 0.0082 2.8E-07 54.7 2.3 45 6-50 9-55 (229)
185 2qby_A CDC6 homolog 1, cell di 95.0 0.024 8.2E-07 55.6 5.8 24 29-52 45-68 (386)
186 2jeo_A Uridine-cytidine kinase 95.0 0.0092 3.2E-07 55.0 2.5 34 17-50 13-46 (245)
187 3ney_A 55 kDa erythrocyte memb 95.0 0.013 4.4E-07 51.8 3.3 26 27-52 17-42 (197)
188 2ff7_A Alpha-hemolysin translo 95.0 0.0087 3E-07 55.2 2.2 31 20-50 26-56 (247)
189 1z47_A CYSA, putative ABC-tran 95.0 0.00055 1.9E-08 66.7 -6.2 46 5-50 16-62 (355)
190 1b0u_A Histidine permease; ABC 95.0 0.0091 3.1E-07 55.6 2.3 47 4-50 7-53 (262)
191 1ji0_A ABC transporter; ATP bi 95.0 0.0089 3E-07 54.9 2.2 47 4-50 7-53 (240)
192 1in4_A RUVB, holliday junction 94.9 0.012 4.1E-07 57.0 3.1 44 9-52 24-74 (334)
193 2zu0_C Probable ATP-dependent 94.9 0.011 3.6E-07 55.3 2.6 46 6-51 23-68 (267)
194 2olj_A Amino acid ABC transpor 94.9 0.0095 3.3E-07 55.4 2.3 47 4-50 25-71 (263)
195 2ghi_A Transport protein; mult 94.9 0.01 3.5E-07 55.2 2.3 33 19-51 36-68 (260)
196 2qi9_C Vitamin B12 import ATP- 94.9 0.01 3.5E-07 54.8 2.3 28 23-50 20-47 (249)
197 2ihy_A ABC transporter, ATP-bi 94.8 0.011 3.6E-07 55.7 2.3 44 7-50 25-68 (279)
198 1mv5_A LMRA, multidrug resista 94.8 0.0091 3.1E-07 54.9 1.8 31 20-50 19-49 (243)
199 4a74_A DNA repair and recombin 94.8 0.0097 3.3E-07 53.9 1.9 27 25-51 21-47 (231)
200 2nq2_C Hypothetical ABC transp 94.8 0.011 3.8E-07 54.7 2.2 46 5-50 6-52 (253)
201 2ixe_A Antigen peptide transpo 94.8 0.011 3.8E-07 55.3 2.3 46 5-50 18-66 (271)
202 2ewv_A Twitching motility prot 94.7 0.011 3.8E-07 58.1 2.3 26 26-51 133-158 (372)
203 4eun_A Thermoresistant glucoki 94.7 0.017 5.7E-07 51.3 3.3 26 26-51 26-51 (200)
204 3c8u_A Fructokinase; YP_612366 94.7 0.013 4.5E-07 52.4 2.6 23 27-49 20-42 (208)
205 3e2i_A Thymidine kinase; Zn-bi 94.7 0.011 3.8E-07 52.7 2.0 42 27-70 26-67 (219)
206 1n0w_A DNA repair protein RAD5 94.7 0.022 7.7E-07 51.9 4.1 29 25-53 20-48 (243)
207 3n70_A Transport activator; si 94.7 0.025 8.6E-07 47.2 4.1 28 22-49 17-44 (145)
208 2yz2_A Putative ABC transporte 94.7 0.012 4.1E-07 54.9 2.3 31 20-50 24-54 (266)
209 3co5_A Putative two-component 94.6 0.02 6.8E-07 47.8 3.2 29 18-46 16-44 (143)
210 2dr3_A UPF0273 protein PH0284; 94.6 0.035 1.2E-06 50.7 5.2 30 25-54 19-48 (247)
211 3nh6_A ATP-binding cassette SU 94.5 0.011 3.7E-07 56.3 1.6 31 20-50 71-101 (306)
212 1j8m_F SRP54, signal recogniti 94.5 0.037 1.3E-06 52.5 5.3 56 29-84 98-153 (297)
213 3tqc_A Pantothenate kinase; bi 94.5 0.057 1.9E-06 51.6 6.6 33 18-50 75-113 (321)
214 2cvh_A DNA repair and recombin 94.4 0.021 7.3E-07 51.2 3.2 33 19-51 9-42 (220)
215 1uaa_A REP helicase, protein ( 94.4 0.031 1.1E-06 59.6 5.0 69 15-85 3-73 (673)
216 3asz_A Uridine kinase; cytidin 94.4 0.018 6E-07 51.5 2.6 24 27-50 4-27 (211)
217 1ye8_A Protein THEP1, hypothet 94.3 0.022 7.6E-07 49.5 3.1 20 31-50 2-21 (178)
218 4f4c_A Multidrug resistance pr 94.3 0.037 1.3E-06 63.6 5.7 34 18-51 433-466 (1321)
219 1rj9_A FTSY, signal recognitio 94.3 0.032 1.1E-06 53.1 4.3 25 28-52 101-125 (304)
220 2bbs_A Cystic fibrosis transme 94.3 0.016 5.5E-07 54.7 2.1 26 25-50 60-85 (290)
221 1sxj_E Activator 1 40 kDa subu 94.2 0.069 2.4E-06 51.8 6.8 21 31-51 38-58 (354)
222 2zts_A Putative uncharacterize 94.2 0.02 6.9E-07 52.5 2.8 30 26-55 27-56 (251)
223 2ffh_A Protein (FFH); SRP54, s 94.2 0.16 5.6E-06 50.4 9.4 56 29-84 98-153 (425)
224 3uie_A Adenylyl-sulfate kinase 94.2 0.027 9.1E-07 50.0 3.4 30 22-51 18-47 (200)
225 3b5x_A Lipid A export ATP-bind 94.2 0.0057 1.9E-07 64.1 -1.2 45 7-51 345-391 (582)
226 1jbk_A CLPB protein; beta barr 94.1 0.059 2E-06 46.7 5.4 36 16-51 28-65 (195)
227 2i3b_A HCR-ntpase, human cance 94.1 0.025 8.4E-07 49.8 2.8 24 29-52 1-24 (189)
228 2onk_A Molybdate/tungstate ABC 94.0 0.021 7.3E-07 52.3 2.5 27 23-50 19-45 (240)
229 1kag_A SKI, shikimate kinase I 94.0 0.025 8.6E-07 48.6 2.8 24 28-51 3-26 (173)
230 2bdt_A BH3686; alpha-beta prot 94.0 0.02 6.9E-07 50.2 2.1 22 29-50 2-23 (189)
231 2qor_A Guanylate kinase; phosp 94.0 0.026 8.8E-07 50.2 2.8 28 25-52 8-35 (204)
232 2qag_B Septin-6, protein NEDD5 94.0 0.023 7.8E-07 56.5 2.6 40 11-51 23-64 (427)
233 1knq_A Gluconate kinase; ALFA/ 94.0 0.025 8.6E-07 48.8 2.6 23 28-50 7-29 (175)
234 2w58_A DNAI, primosome compone 93.9 0.052 1.8E-06 48.0 4.8 22 30-51 55-76 (202)
235 1pjr_A PCRA; DNA repair, DNA r 93.9 0.052 1.8E-06 58.4 5.6 69 14-84 11-81 (724)
236 2pjz_A Hypothetical protein ST 93.9 0.022 7.4E-07 53.0 2.2 29 22-51 24-52 (263)
237 1tq4_A IIGP1, interferon-induc 93.9 0.05 1.7E-06 54.0 4.8 35 17-51 37-91 (413)
238 3u61_B DNA polymerase accessor 93.8 0.13 4.4E-06 49.2 7.6 34 17-50 33-69 (324)
239 3d31_A Sulfate/molybdate ABC t 93.8 0.021 7.3E-07 55.3 2.0 32 19-50 16-47 (348)
240 3u4q_A ATP-dependent helicase/ 93.8 0.062 2.1E-06 61.4 6.1 70 12-83 8-81 (1232)
241 1tf7_A KAIC; homohexamer, hexa 93.7 0.017 6E-07 59.6 1.3 37 15-51 24-61 (525)
242 2obl_A ESCN; ATPase, hydrolase 93.7 0.013 4.3E-07 57.0 0.2 47 5-52 47-94 (347)
243 2dpy_A FLII, flagellum-specifi 93.7 0.017 5.8E-07 58.0 1.1 48 4-52 132-180 (438)
244 1njg_A DNA polymerase III subu 93.7 0.083 2.8E-06 47.7 5.7 36 16-51 29-67 (250)
245 3gd7_A Fusion complex of cysti 93.6 0.027 9.3E-07 55.4 2.4 45 6-50 22-68 (390)
246 2p65_A Hypothetical protein PF 93.5 0.064 2.2E-06 46.3 4.6 37 16-52 28-66 (187)
247 2qmh_A HPR kinase/phosphorylas 93.4 0.037 1.3E-06 48.6 2.7 24 28-51 33-56 (205)
248 3a8t_A Adenylate isopentenyltr 93.4 0.036 1.2E-06 53.1 2.8 24 28-51 39-62 (339)
249 2o0j_A Terminase, DNA packagin 93.4 0.19 6.7E-06 49.2 8.1 71 12-82 161-231 (385)
250 1pui_A ENGB, probable GTP-bind 93.4 0.0076 2.6E-07 53.8 -1.9 45 1-48 1-45 (210)
251 2bbw_A Adenylate kinase 4, AK4 93.3 0.045 1.5E-06 50.3 3.3 24 28-51 26-49 (246)
252 1nlf_A Regulatory protein REPA 93.3 0.032 1.1E-06 52.3 2.3 27 25-51 26-52 (279)
253 1sxj_C Activator 1 40 kDa subu 93.3 0.078 2.7E-06 51.2 5.1 39 13-51 28-68 (340)
254 3trf_A Shikimate kinase, SK; a 93.2 0.047 1.6E-06 47.5 3.2 24 29-52 5-28 (185)
255 1kht_A Adenylate kinase; phosp 93.2 0.049 1.7E-06 47.5 3.2 24 28-51 2-25 (192)
256 1gm5_A RECG; helicase, replica 93.2 0.31 1.1E-05 52.5 10.0 78 254-336 417-495 (780)
257 2ze6_A Isopentenyl transferase 93.2 0.038 1.3E-06 51.1 2.5 21 31-51 3-23 (253)
258 3lw7_A Adenylate kinase relate 93.1 0.046 1.6E-06 46.8 2.9 20 30-49 2-21 (179)
259 3exa_A TRNA delta(2)-isopenten 93.1 0.042 1.4E-06 52.0 2.8 23 29-51 3-25 (322)
260 1tf7_A KAIC; homohexamer, hexa 93.1 0.086 3E-06 54.3 5.4 29 25-53 277-305 (525)
261 1svm_A Large T antigen; AAA+ f 93.1 0.055 1.9E-06 53.0 3.7 32 20-51 160-191 (377)
262 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.047 1.6E-06 45.9 2.8 22 29-50 23-44 (149)
263 3cm0_A Adenylate kinase; ATP-b 93.0 0.038 1.3E-06 48.1 2.2 24 28-51 3-26 (186)
264 3kta_A Chromosome segregation 93.0 0.052 1.8E-06 47.1 3.1 21 31-51 28-48 (182)
265 1qhx_A CPT, protein (chloramph 93.0 0.054 1.9E-06 46.7 3.2 24 29-52 3-26 (178)
266 3umf_A Adenylate kinase; rossm 93.0 0.045 1.6E-06 49.1 2.7 29 25-53 25-53 (217)
267 2qt1_A Nicotinamide riboside k 92.9 0.037 1.3E-06 49.2 2.1 27 24-50 16-42 (207)
268 3k1j_A LON protease, ATP-depen 92.9 0.16 5.3E-06 53.4 7.1 40 12-51 43-82 (604)
269 2bwj_A Adenylate kinase 5; pho 92.9 0.057 2E-06 47.4 3.2 29 24-52 7-35 (199)
270 4e22_A Cytidylate kinase; P-lo 92.9 0.043 1.5E-06 50.6 2.4 26 27-52 25-50 (252)
271 3kb2_A SPBC2 prophage-derived 92.8 0.055 1.9E-06 46.3 2.9 22 31-52 3-24 (173)
272 3cmu_A Protein RECA, recombina 92.8 0.054 1.8E-06 63.6 3.6 41 26-68 1424-1464(2050)
273 3bos_A Putative DNA replicatio 92.8 0.11 3.8E-06 46.9 5.1 24 28-51 51-74 (242)
274 2qgz_A Helicase loader, putati 92.7 0.1 3.4E-06 49.7 4.8 23 29-51 152-174 (308)
275 1rz3_A Hypothetical protein rb 92.7 0.099 3.4E-06 46.2 4.5 23 28-50 21-43 (201)
276 1ixz_A ATP-dependent metallopr 92.7 0.025 8.7E-07 52.2 0.5 23 30-52 50-72 (254)
277 1y63_A LMAJ004144AAA protein; 92.6 0.065 2.2E-06 46.7 3.2 25 27-51 8-32 (184)
278 2f1r_A Molybdopterin-guanine d 92.6 0.038 1.3E-06 47.7 1.5 22 30-51 3-24 (171)
279 2chg_A Replication factor C sm 92.6 0.14 4.9E-06 45.4 5.5 36 16-51 23-60 (226)
280 2xxa_A Signal recognition part 92.5 0.11 3.9E-06 51.9 5.1 55 30-84 101-156 (433)
281 2vp4_A Deoxynucleoside kinase; 92.5 0.046 1.6E-06 49.7 2.1 24 27-50 18-41 (230)
282 1cke_A CK, MSSA, protein (cyti 92.5 0.066 2.3E-06 48.2 3.2 24 29-52 5-28 (227)
283 2pez_A Bifunctional 3'-phospho 92.5 0.06 2.1E-06 46.6 2.7 23 28-50 4-26 (179)
284 2j37_W Signal recognition part 92.4 0.51 1.7E-05 48.0 9.9 23 31-53 103-125 (504)
285 2c95_A Adenylate kinase 1; tra 92.4 0.082 2.8E-06 46.3 3.6 27 26-52 6-32 (196)
286 3iij_A Coilin-interacting nucl 92.4 0.064 2.2E-06 46.4 2.8 26 27-52 9-34 (180)
287 2gno_A DNA polymerase III, gam 92.4 0.27 9.2E-06 46.6 7.3 29 22-50 9-39 (305)
288 1ex7_A Guanylate kinase; subst 92.3 0.066 2.3E-06 46.8 2.8 23 30-52 2-24 (186)
289 1nij_A Hypothetical protein YJ 92.3 0.072 2.5E-06 51.0 3.3 23 30-52 5-27 (318)
290 2v54_A DTMP kinase, thymidylat 92.3 0.077 2.6E-06 46.9 3.3 25 28-52 3-27 (204)
291 3lda_A DNA repair protein RAD5 92.3 0.092 3.1E-06 51.9 4.0 28 26-53 175-202 (400)
292 1ly1_A Polynucleotide kinase; 92.2 0.071 2.4E-06 45.9 2.9 22 30-51 3-24 (181)
293 2z43_A DNA repair and recombin 92.2 0.094 3.2E-06 50.3 4.0 29 25-53 103-131 (324)
294 3foz_A TRNA delta(2)-isopenten 92.2 0.065 2.2E-06 50.6 2.7 23 30-52 11-33 (316)
295 4ag6_A VIRB4 ATPase, type IV s 92.2 0.077 2.6E-06 52.5 3.4 41 28-70 34-74 (392)
296 2yv5_A YJEQ protein; hydrolase 92.2 0.13 4.5E-06 48.7 4.9 28 23-50 159-186 (302)
297 1pzn_A RAD51, DNA repair and r 92.1 0.082 2.8E-06 51.3 3.4 29 25-53 127-155 (349)
298 2v3c_C SRP54, signal recogniti 92.1 0.041 1.4E-06 55.0 1.3 24 30-53 100-123 (432)
299 2rhm_A Putative kinase; P-loop 92.1 0.068 2.3E-06 46.7 2.6 24 28-51 4-27 (193)
300 1gvn_B Zeta; postsegregational 92.0 0.12 4.2E-06 48.5 4.5 23 29-51 33-55 (287)
301 1iy2_A ATP-dependent metallopr 92.0 0.034 1.2E-06 52.1 0.6 23 30-52 74-96 (278)
302 1m7g_A Adenylylsulfate kinase; 92.0 0.093 3.2E-06 46.8 3.4 33 17-50 14-46 (211)
303 3hr8_A Protein RECA; alpha and 92.0 0.042 1.5E-06 53.3 1.2 30 25-54 57-86 (356)
304 3t61_A Gluconokinase; PSI-biol 92.0 0.069 2.4E-06 47.2 2.5 23 29-51 18-40 (202)
305 1zd8_A GTP:AMP phosphotransfer 91.8 0.087 3E-06 47.6 3.1 26 27-52 5-30 (227)
306 1yqt_A RNAse L inhibitor; ATP- 91.8 0.069 2.4E-06 55.1 2.6 27 25-51 43-69 (538)
307 1e9r_A Conjugal transfer prote 91.8 0.076 2.6E-06 53.3 2.9 43 28-72 52-94 (437)
308 3sr0_A Adenylate kinase; phosp 91.8 0.09 3.1E-06 46.8 3.0 23 31-53 2-24 (206)
309 3b9p_A CG5977-PA, isoform A; A 91.8 0.18 6.2E-06 47.5 5.4 23 29-51 54-76 (297)
310 4a82_A Cystic fibrosis transme 91.7 0.057 1.9E-06 56.4 1.9 32 19-50 357-388 (578)
311 3sop_A Neuronal-specific septi 91.7 0.077 2.6E-06 49.5 2.7 21 31-51 4-24 (270)
312 2yvu_A Probable adenylyl-sulfa 91.6 0.086 2.9E-06 45.9 2.7 24 28-51 12-35 (186)
313 1v5w_A DMC1, meiotic recombina 91.6 0.12 4.2E-06 50.0 4.1 28 26-53 119-146 (343)
314 2r6a_A DNAB helicase, replicat 91.6 0.087 3E-06 53.2 3.1 40 16-55 190-229 (454)
315 3bh0_A DNAB-like replicative h 91.6 0.12 4E-06 49.5 3.9 40 16-55 55-94 (315)
316 1tev_A UMP-CMP kinase; ploop, 91.6 0.085 2.9E-06 46.1 2.7 23 29-51 3-25 (196)
317 3b60_A Lipid A export ATP-bind 91.6 0.064 2.2E-06 56.1 2.2 33 18-50 358-390 (582)
318 3tlx_A Adenylate kinase 2; str 91.6 0.12 4.1E-06 47.3 3.8 26 27-52 27-52 (243)
319 2r44_A Uncharacterized protein 91.6 0.17 6E-06 48.5 5.1 37 15-51 32-68 (331)
320 4fcw_A Chaperone protein CLPB; 91.6 0.15 5.2E-06 48.3 4.7 38 14-51 21-69 (311)
321 3qf7_A RAD50; ABC-ATPase, ATPa 91.6 0.088 3E-06 51.5 3.0 22 28-50 23-44 (365)
322 2plr_A DTMP kinase, probable t 91.5 0.088 3E-06 46.7 2.7 25 28-52 3-27 (213)
323 2zr9_A Protein RECA, recombina 91.5 0.083 2.8E-06 51.3 2.7 30 25-54 57-86 (349)
324 3qf4_B Uncharacterized ABC tra 91.4 0.066 2.3E-06 56.2 2.1 32 19-50 371-402 (598)
325 4eaq_A DTMP kinase, thymidylat 91.4 0.21 7E-06 45.3 5.1 26 27-52 24-49 (229)
326 3d3q_A TRNA delta(2)-isopenten 91.3 0.096 3.3E-06 50.3 2.9 22 30-51 8-29 (340)
327 1lv7_A FTSH; alpha/beta domain 91.3 0.22 7.5E-06 45.8 5.3 23 29-51 45-67 (257)
328 1ofh_A ATP-dependent HSL prote 91.3 0.19 6.3E-06 47.6 4.9 23 29-51 50-72 (310)
329 1aky_A Adenylate kinase; ATP:A 91.3 0.11 3.9E-06 46.5 3.3 25 28-52 3-27 (220)
330 2if2_A Dephospho-COA kinase; a 91.2 0.1 3.6E-06 46.0 2.9 21 31-51 3-23 (204)
331 2ius_A DNA translocase FTSK; n 91.2 0.19 6.5E-06 51.2 5.1 26 26-51 164-189 (512)
332 3crm_A TRNA delta(2)-isopenten 91.2 0.1 3.5E-06 49.8 2.9 22 30-51 6-27 (323)
333 1lw7_A Transcriptional regulat 91.2 0.091 3.1E-06 51.4 2.6 27 24-50 163-191 (365)
334 2rcn_A Probable GTPase ENGC; Y 91.2 0.16 5.4E-06 49.2 4.3 26 26-51 212-237 (358)
335 2yl4_A ATP-binding cassette SU 91.2 0.068 2.3E-06 56.0 1.8 33 19-51 360-392 (595)
336 2wwf_A Thymidilate kinase, put 91.2 0.11 3.8E-06 46.1 3.0 24 28-51 9-32 (212)
337 3nbx_X ATPase RAVA; AAA+ ATPas 91.1 0.17 5.9E-06 51.5 4.7 38 13-50 25-62 (500)
338 2bjv_A PSP operon transcriptio 91.1 0.3 1E-05 45.1 6.1 25 26-50 26-50 (265)
339 1jjv_A Dephospho-COA kinase; P 91.1 0.11 3.7E-06 46.1 2.9 20 31-50 4-23 (206)
340 1zuh_A Shikimate kinase; alpha 91.1 0.12 4.1E-06 44.0 3.1 23 30-52 8-30 (168)
341 1xjc_A MOBB protein homolog; s 91.1 0.19 6.6E-06 43.0 4.3 23 30-52 5-27 (169)
342 2jaq_A Deoxyguanosine kinase; 91.1 0.12 4E-06 45.6 3.1 22 31-52 2-23 (205)
343 1np6_A Molybdopterin-guanine d 91.0 0.21 7.3E-06 43.0 4.6 23 30-52 7-29 (174)
344 2cdn_A Adenylate kinase; phosp 91.0 0.13 4.4E-06 45.4 3.3 24 29-52 20-43 (201)
345 3fb4_A Adenylate kinase; psych 91.0 0.11 3.8E-06 46.3 2.9 22 31-52 2-23 (216)
346 1nn5_A Similar to deoxythymidy 90.9 0.12 4.2E-06 45.9 3.1 25 27-51 7-31 (215)
347 3qf4_A ABC transporter, ATP-bi 90.9 0.076 2.6E-06 55.6 1.9 32 19-50 359-390 (587)
348 3j16_B RLI1P; ribosome recycli 90.9 0.096 3.3E-06 54.8 2.6 27 25-51 99-125 (608)
349 1nks_A Adenylate kinase; therm 90.9 0.12 4E-06 45.1 2.8 21 31-51 3-23 (194)
350 3dl0_A Adenylate kinase; phosp 90.8 0.13 4.5E-06 45.9 3.2 22 31-52 2-23 (216)
351 3hws_A ATP-dependent CLP prote 90.8 0.23 7.8E-06 48.4 5.1 24 28-51 50-73 (363)
352 1zak_A Adenylate kinase; ATP:A 90.8 0.1 3.5E-06 46.9 2.4 25 28-52 4-28 (222)
353 2vli_A Antibiotic resistance p 90.8 0.1 3.5E-06 45.1 2.3 24 28-51 4-27 (183)
354 1yqt_A RNAse L inhibitor; ATP- 90.8 0.1 3.4E-06 53.9 2.6 25 27-51 310-334 (538)
355 1tue_A Replication protein E1; 90.7 0.14 4.7E-06 45.3 3.0 21 28-48 57-77 (212)
356 3bk7_A ABC transporter ATP-bin 90.7 0.093 3.2E-06 54.9 2.3 27 25-51 113-139 (607)
357 3ozx_A RNAse L inhibitor; ATP 90.7 0.093 3.2E-06 54.1 2.3 25 26-50 291-315 (538)
358 4a1f_A DNAB helicase, replicat 90.7 0.22 7.6E-06 47.9 4.7 40 16-55 33-72 (338)
359 1via_A Shikimate kinase; struc 90.7 0.12 4.1E-06 44.5 2.6 22 31-52 6-27 (175)
360 3qks_A DNA double-strand break 90.7 0.13 4.5E-06 45.6 3.0 22 29-50 23-44 (203)
361 3bk7_A ABC transporter ATP-bin 90.6 0.1 3.6E-06 54.6 2.6 26 26-51 379-404 (607)
362 1odf_A YGR205W, hypothetical 3 90.6 0.12 4.1E-06 48.7 2.7 21 29-49 31-51 (290)
363 3io5_A Recombination and repai 90.5 0.069 2.3E-06 50.6 0.9 40 26-66 26-65 (333)
364 3cf0_A Transitional endoplasmi 90.5 0.12 4E-06 49.1 2.6 26 27-52 47-72 (301)
365 3ux8_A Excinuclease ABC, A sub 90.4 0.087 3E-06 56.1 1.8 27 20-46 35-61 (670)
366 3ux8_A Excinuclease ABC, A sub 90.4 0.087 3E-06 56.1 1.8 27 21-47 340-366 (670)
367 2q6t_A DNAB replication FORK h 90.4 0.15 5.2E-06 51.3 3.5 39 17-55 188-226 (444)
368 1u0l_A Probable GTPase ENGC; p 90.4 0.18 6E-06 47.8 3.8 27 24-50 164-190 (301)
369 1g5t_A COB(I)alamin adenosyltr 90.3 0.36 1.2E-05 42.2 5.4 39 29-69 28-66 (196)
370 2p67_A LAO/AO transport system 90.2 0.077 2.6E-06 51.4 1.1 27 26-52 53-79 (341)
371 3be4_A Adenylate kinase; malar 90.2 0.16 5.5E-06 45.5 3.2 25 28-52 4-28 (217)
372 1gtv_A TMK, thymidylate kinase 90.2 0.077 2.6E-06 47.2 1.0 21 31-51 2-22 (214)
373 1e6c_A Shikimate kinase; phosp 90.2 0.14 4.8E-06 43.8 2.6 22 30-51 3-24 (173)
374 2qz4_A Paraplegin; AAA+, SPG7, 90.2 0.33 1.1E-05 44.5 5.4 24 28-51 38-61 (262)
375 1u94_A RECA protein, recombina 90.1 0.14 4.9E-06 49.7 2.9 29 26-54 60-88 (356)
376 3ozx_A RNAse L inhibitor; ATP 90.1 0.11 3.8E-06 53.5 2.2 25 26-50 22-46 (538)
377 2i1q_A DNA repair and recombin 90.0 0.2 6.9E-06 47.9 3.8 28 26-53 95-122 (322)
378 3eph_A TRNA isopentenyltransfe 90.0 0.13 4.6E-06 50.4 2.6 22 30-51 3-24 (409)
379 2d7d_A Uvrabc system protein B 89.9 0.41 1.4E-05 50.7 6.5 70 10-84 8-82 (661)
380 2z0h_A DTMP kinase, thymidylat 89.9 0.16 5.5E-06 44.4 2.9 21 31-51 2-22 (197)
381 1ukz_A Uridylate kinase; trans 89.9 0.15 5.2E-06 44.9 2.7 23 30-52 16-38 (203)
382 1ak2_A Adenylate kinase isoenz 89.8 0.18 6.2E-06 45.7 3.3 25 28-52 15-39 (233)
383 2pt5_A Shikimate kinase, SK; a 89.8 0.17 5.9E-06 43.0 2.9 21 31-51 2-22 (168)
384 1qf9_A UMP/CMP kinase, protein 89.8 0.16 5.4E-06 44.2 2.7 23 30-52 7-29 (194)
385 2pbr_A DTMP kinase, thymidylat 89.8 0.18 6E-06 44.0 3.0 21 31-51 2-22 (195)
386 2eyq_A TRCF, transcription-rep 89.7 1.1 3.7E-05 50.7 10.1 79 253-336 651-730 (1151)
387 2iyv_A Shikimate kinase, SK; t 89.7 0.15 5.3E-06 44.1 2.6 23 30-52 3-25 (184)
388 1sxj_D Activator 1 41 kDa subu 89.7 0.18 6.1E-06 48.7 3.3 34 17-50 44-79 (353)
389 3qkt_A DNA double-strand break 89.7 0.15 5.3E-06 49.2 2.8 21 29-49 23-43 (339)
390 1e4v_A Adenylate kinase; trans 89.6 0.16 5.6E-06 45.2 2.7 22 31-52 2-23 (214)
391 2x8a_A Nuclear valosin-contain 89.6 0.15 5.3E-06 47.5 2.6 23 30-52 45-67 (274)
392 2www_A Methylmalonic aciduria 89.6 0.44 1.5E-05 46.1 5.9 24 29-52 74-97 (349)
393 2p5t_B PEZT; postsegregational 89.5 0.12 4.1E-06 47.6 1.8 23 29-51 32-54 (253)
394 2xb4_A Adenylate kinase; ATP-b 89.5 0.18 6.2E-06 45.4 2.9 22 31-52 2-23 (223)
395 3a4m_A L-seryl-tRNA(SEC) kinas 89.4 0.17 5.9E-06 46.8 2.7 23 29-51 4-26 (260)
396 2qen_A Walker-type ATPase; unk 89.4 0.42 1.4E-05 45.8 5.7 36 17-52 19-54 (350)
397 3bgw_A DNAB-like replicative h 89.3 0.2 6.7E-06 50.4 3.3 48 17-66 185-232 (444)
398 4f4c_A Multidrug resistance pr 89.3 0.16 5.3E-06 58.5 2.9 33 18-50 1094-1126(1321)
399 1vht_A Dephospho-COA kinase; s 89.3 0.17 5.9E-06 45.2 2.6 22 29-50 4-25 (218)
400 1t9h_A YLOQ, probable GTPase E 89.2 0.064 2.2E-06 50.9 -0.3 27 24-50 168-194 (307)
401 1uf9_A TT1252 protein; P-loop, 89.2 0.18 6E-06 44.4 2.6 22 30-51 9-30 (203)
402 1iqp_A RFCS; clamp loader, ext 89.2 0.39 1.4E-05 45.6 5.3 34 17-50 32-67 (327)
403 3syl_A Protein CBBX; photosynt 89.2 0.19 6.6E-06 47.5 3.1 22 29-50 67-88 (309)
404 2iw3_A Elongation factor 3A; a 89.1 0.16 5.3E-06 55.9 2.5 29 22-50 454-482 (986)
405 3t15_A Ribulose bisphosphate c 89.1 0.35 1.2E-05 45.6 4.7 24 30-53 37-60 (293)
406 4tmk_A Protein (thymidylate ki 89.0 0.47 1.6E-05 42.3 5.3 23 28-50 2-24 (213)
407 3euj_A Chromosome partition pr 89.0 0.17 5.7E-06 51.2 2.5 25 25-50 26-50 (483)
408 3auy_A DNA double-strand break 89.0 0.18 6E-06 49.4 2.6 22 30-51 26-47 (371)
409 1ojl_A Transcriptional regulat 88.8 0.29 9.8E-06 46.4 3.9 24 27-50 23-46 (304)
410 3d8b_A Fidgetin-like protein 1 88.8 0.45 1.5E-05 46.2 5.4 25 28-52 116-140 (357)
411 3v9p_A DTMP kinase, thymidylat 88.8 0.19 6.5E-06 45.4 2.5 26 25-50 21-46 (227)
412 3ice_A Transcription terminati 88.7 0.2 6.9E-06 48.7 2.7 29 22-50 167-195 (422)
413 1e69_A Chromosome segregation 88.7 0.16 5.6E-06 48.6 2.1 24 27-51 23-46 (322)
414 4edh_A DTMP kinase, thymidylat 88.5 0.22 7.5E-06 44.5 2.7 24 27-50 4-27 (213)
415 2vhj_A Ntpase P4, P4; non- hyd 88.5 0.17 5.8E-06 48.1 2.0 27 26-52 120-146 (331)
416 1xwi_A SKD1 protein; VPS4B, AA 88.5 0.44 1.5E-05 45.6 5.0 24 29-52 45-68 (322)
417 1w1w_A Structural maintenance 88.4 0.21 7.3E-06 49.9 2.8 25 27-51 24-48 (430)
418 1q57_A DNA primase/helicase; d 88.4 0.21 7.1E-06 51.2 2.8 40 17-56 230-269 (503)
419 1oix_A RAS-related protein RAB 88.4 0.23 8E-06 43.3 2.8 22 31-52 31-52 (191)
420 2o5v_A DNA replication and rep 88.3 0.18 6.1E-06 49.0 2.1 48 288-339 293-343 (359)
421 1xp8_A RECA protein, recombina 88.2 0.22 7.7E-06 48.5 2.7 30 25-54 70-99 (366)
422 3tmk_A Thymidylate kinase; pho 88.2 0.27 9.3E-06 44.0 3.1 25 28-52 4-28 (216)
423 2f9l_A RAB11B, member RAS onco 88.1 0.25 8.6E-06 43.3 2.8 22 31-52 7-28 (199)
424 3cr8_A Sulfate adenylyltranfer 88.0 0.18 6.1E-06 52.0 2.0 26 26-51 366-391 (552)
425 3j16_B RLI1P; ribosome recycli 88.0 0.26 8.9E-06 51.5 3.2 23 29-51 378-400 (608)
426 1hqc_A RUVB; extended AAA-ATPa 87.9 0.4 1.4E-05 45.6 4.3 23 29-51 38-60 (324)
427 3r20_A Cytidylate kinase; stru 87.9 0.3 1E-05 44.2 3.2 25 28-52 8-32 (233)
428 1q3t_A Cytidylate kinase; nucl 87.7 0.31 1E-05 44.2 3.2 26 26-51 13-38 (236)
429 3uk6_A RUVB-like 2; hexameric 87.7 0.27 9.2E-06 47.8 3.0 23 30-52 71-93 (368)
430 3lv8_A DTMP kinase, thymidylat 87.6 0.63 2.2E-05 42.2 5.2 25 27-51 25-49 (236)
431 4aby_A DNA repair protein RECN 87.6 0.092 3.1E-06 52.3 -0.4 24 26-50 58-81 (415)
432 2grj_A Dephospho-COA kinase; T 87.5 0.3 1E-05 42.9 2.9 22 30-51 13-34 (192)
433 1jr3_A DNA polymerase III subu 87.5 0.51 1.7E-05 45.8 4.9 35 17-51 23-60 (373)
434 3pvs_A Replication-associated 87.4 0.35 1.2E-05 48.6 3.7 31 21-51 40-72 (447)
435 3thx_B DNA mismatch repair pro 87.0 0.25 8.7E-06 54.0 2.5 24 26-49 670-693 (918)
436 1wb9_A DNA mismatch repair pro 86.9 0.31 1.1E-05 52.6 3.2 25 27-51 605-629 (800)
437 3m6a_A ATP-dependent protease 86.8 0.32 1.1E-05 50.2 3.1 24 28-51 107-130 (543)
438 3oiy_A Reverse gyrase helicase 86.8 0.72 2.5E-05 45.6 5.6 79 252-336 62-144 (414)
439 2qp9_X Vacuolar protein sortin 86.8 0.56 1.9E-05 45.5 4.7 24 29-52 84-107 (355)
440 3eie_A Vacuolar protein sortin 86.7 0.35 1.2E-05 46.2 3.1 24 29-52 51-74 (322)
441 3pxg_A Negative regulator of g 86.7 0.63 2.2E-05 47.0 5.2 35 17-51 187-223 (468)
442 2gj8_A MNME, tRNA modification 86.7 0.31 1.1E-05 41.6 2.5 24 28-51 3-26 (172)
443 1g8p_A Magnesium-chelatase 38 86.6 0.49 1.7E-05 45.5 4.1 24 28-51 44-67 (350)
444 2chq_A Replication factor C sm 86.5 0.47 1.6E-05 44.8 4.0 33 18-50 25-59 (319)
445 2iw3_A Elongation factor 3A; a 86.4 0.18 6.3E-06 55.3 1.0 33 19-51 689-721 (986)
446 1a7j_A Phosphoribulokinase; tr 86.4 0.3 1E-05 46.0 2.4 23 28-50 4-26 (290)
447 4hlc_A DTMP kinase, thymidylat 86.4 0.88 3E-05 40.2 5.3 22 29-50 2-23 (205)
448 1c9k_A COBU, adenosylcobinamid 86.3 0.33 1.1E-05 41.9 2.4 21 32-52 2-22 (180)
449 1ewq_A DNA mismatch repair pro 86.3 0.35 1.2E-05 52.0 3.1 23 29-51 576-598 (765)
450 2ga8_A Hypothetical 39.9 kDa p 86.2 0.48 1.6E-05 45.6 3.8 26 24-49 17-44 (359)
451 3tqf_A HPR(Ser) kinase; transf 86.2 0.35 1.2E-05 41.3 2.5 25 28-52 15-39 (181)
452 2oxc_A Probable ATP-dependent 86.2 2.7 9.2E-05 37.5 8.7 75 253-336 91-171 (230)
453 2iut_A DNA translocase FTSK; n 86.2 0.62 2.1E-05 47.9 4.7 43 27-69 212-256 (574)
454 2dyk_A GTP-binding protein; GT 86.2 0.4 1.4E-05 39.9 2.9 22 31-52 3-24 (161)
455 3ake_A Cytidylate kinase; CMP 86.1 0.38 1.3E-05 42.3 2.9 21 31-51 4-24 (208)
456 2wji_A Ferrous iron transport 86.0 0.4 1.4E-05 40.5 2.9 21 31-51 5-25 (165)
457 1ltq_A Polynucleotide kinase; 86.0 0.38 1.3E-05 45.3 2.9 22 30-51 3-24 (301)
458 1uj2_A Uridine-cytidine kinase 85.9 0.39 1.3E-05 44.0 2.9 22 30-51 23-44 (252)
459 3thx_A DNA mismatch repair pro 85.9 0.35 1.2E-05 53.1 2.9 24 26-49 659-682 (934)
460 1t6n_A Probable ATP-dependent 85.8 6 0.0002 34.8 10.8 76 254-336 82-163 (220)
461 2r2a_A Uncharacterized protein 85.8 0.44 1.5E-05 42.0 3.0 23 31-53 7-29 (199)
462 1um8_A ATP-dependent CLP prote 85.7 0.38 1.3E-05 47.1 2.8 23 29-51 72-94 (376)
463 1z2a_A RAS-related protein RAB 85.6 0.43 1.5E-05 40.0 2.9 22 31-52 7-28 (168)
464 2ce2_X GTPase HRAS; signaling 85.6 0.41 1.4E-05 39.9 2.7 22 31-52 5-26 (166)
465 3g5u_A MCG1178, multidrug resi 85.5 0.26 8.9E-06 56.4 1.7 33 18-50 405-437 (1284)
466 2r62_A Cell division protease 85.5 0.39 1.3E-05 44.4 2.7 23 29-51 44-66 (268)
467 2ged_A SR-beta, signal recogni 85.4 0.45 1.5E-05 41.2 2.9 23 30-52 49-71 (193)
468 1qhl_A Protein (cell division 85.3 0.14 4.9E-06 46.2 -0.4 22 31-52 29-50 (227)
469 1p5z_B DCK, deoxycytidine kina 85.3 0.33 1.1E-05 44.8 2.1 23 27-49 22-44 (263)
470 2ocp_A DGK, deoxyguanosine kin 85.3 0.4 1.4E-05 43.6 2.6 23 29-51 2-24 (241)
471 2c9o_A RUVB-like 1; hexameric 85.2 0.68 2.3E-05 46.6 4.5 23 30-52 64-86 (456)
472 2f6r_A COA synthase, bifunctio 85.2 0.4 1.4E-05 44.8 2.6 21 30-50 76-96 (281)
473 1sxj_B Activator 1 37 kDa subu 85.1 0.94 3.2E-05 42.8 5.3 34 17-50 28-63 (323)
474 2zan_A Vacuolar protein sortin 85.1 0.99 3.4E-05 45.2 5.6 24 29-52 167-190 (444)
475 3fe2_A Probable ATP-dependent 85.1 2 7E-05 38.7 7.4 74 254-336 102-181 (242)
476 1ky3_A GTP-binding protein YPT 84.9 0.49 1.7E-05 40.3 2.9 22 31-52 10-31 (182)
477 1z0j_A RAB-22, RAS-related pro 84.8 0.51 1.7E-05 39.6 2.9 23 31-53 8-30 (170)
478 1kao_A RAP2A; GTP-binding prot 84.8 0.51 1.7E-05 39.4 2.9 22 31-52 5-26 (167)
479 1ek0_A Protein (GTP-binding pr 84.7 0.5 1.7E-05 39.6 2.9 23 31-53 5-27 (170)
480 2wjg_A FEOB, ferrous iron tran 84.7 0.5 1.7E-05 40.7 2.9 21 31-51 9-29 (188)
481 3ld9_A DTMP kinase, thymidylat 84.6 0.47 1.6E-05 42.6 2.7 23 28-50 20-42 (223)
482 1vec_A ATP-dependent RNA helic 84.5 9.4 0.00032 33.0 11.3 76 253-336 70-151 (206)
483 1u8z_A RAS-related protein RAL 84.4 0.53 1.8E-05 39.3 2.9 23 31-53 6-28 (168)
484 1g16_A RAS-related protein SEC 84.4 0.51 1.7E-05 39.6 2.7 22 31-52 5-26 (170)
485 1wms_A RAB-9, RAB9, RAS-relate 84.1 0.56 1.9E-05 39.8 2.9 22 31-52 9-30 (177)
486 2erx_A GTP-binding protein DI- 84.1 0.57 1.9E-05 39.4 2.9 21 31-51 5-25 (172)
487 2zej_A Dardarin, leucine-rich 84.0 0.47 1.6E-05 40.9 2.4 21 31-51 4-24 (184)
488 3zvl_A Bifunctional polynucleo 84.0 0.61 2.1E-05 46.3 3.5 23 29-51 258-280 (416)
489 1svi_A GTP-binding protein YSX 84.0 0.49 1.7E-05 41.0 2.5 23 29-51 23-45 (195)
490 3g5u_A MCG1178, multidrug resi 83.9 0.37 1.3E-05 55.2 2.1 33 18-50 1048-1080(1284)
491 3bor_A Human initiation factor 83.9 2.9 9.8E-05 37.6 7.8 76 253-336 97-178 (237)
492 3lxx_A GTPase IMAP family memb 83.8 0.56 1.9E-05 42.5 2.9 22 31-52 31-52 (239)
493 1z08_A RAS-related protein RAB 83.8 0.6 2E-05 39.2 2.9 22 31-52 8-29 (170)
494 1c1y_A RAS-related protein RAP 83.7 0.59 2E-05 39.1 2.9 22 31-52 5-26 (167)
495 1qde_A EIF4A, translation init 83.7 3.2 0.00011 36.7 7.9 75 252-336 80-160 (224)
496 2r8r_A Sensor protein; KDPD, P 83.5 0.94 3.2E-05 40.6 4.1 40 28-67 4-44 (228)
497 2o8b_B DNA mismatch repair pro 83.5 0.54 1.9E-05 52.2 3.1 21 29-49 789-809 (1022)
498 1nrj_B SR-beta, signal recogni 83.4 0.59 2E-05 41.4 2.9 23 30-52 13-35 (218)
499 4b4t_M 26S protease regulatory 83.4 0.62 2.1E-05 46.3 3.2 24 29-52 215-238 (434)
500 2wsm_A Hydrogenase expression/ 83.2 1.1 3.7E-05 39.8 4.6 26 28-53 29-54 (221)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2e-73 Score=617.27 Aligned_cols=460 Identities=49% Similarity=0.804 Sum_probs=415.0
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC-CeEEEEeCccHHHHHHHHHHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
.++++.+..+|.+..++.+...+..+++++++||||||||+++|+++.......+ +..+++++|++.++.++++++.+.
T Consensus 84 ~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 84 VDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp HHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHH
Confidence 4566667788999899999999999999999999999999999999876554332 556889999999999999999999
Q ss_pred hCCccCCeeeEEEeecccCCh--------hhhH-HHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccC
Q 010422 83 SGVELGQRVGYSIRFDDRTST--------STRI-KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (511)
Q Consensus 83 ~~~~~~~~vg~~~~~~~~~~~--------~~~i-~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~ 153 (511)
.+..++..+||..+++..... ...+ ..++.++.+.+++++|+||+|+|..+.+.++.+++.+...+
T Consensus 164 ~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~----- 238 (773)
T 2xau_A 164 MDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR----- 238 (773)
T ss_dssp TTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-----
T ss_pred hCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-----
Confidence 988888899987654433221 2222 25566788999999999999999999999999999888766
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCC
Q 010422 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYP 233 (511)
Q Consensus 154 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (511)
++.++|+||||++.+.+++|+++.+++.++++.+|++++|...+
T Consensus 239 ------------------------------------~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~ 282 (773)
T 2xau_A 239 ------------------------------------PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEF 282 (773)
T ss_dssp ------------------------------------TTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSC
T ss_pred ------------------------------------CCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCC
Confidence 67899999999999999999999999999999999999999988
Q ss_pred CCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcC--CCCCCCeEEEEccCCCCHHHHHhhcCcCC-
Q 010422 234 EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASRKLVTVPIFSSLPSEQQMRVFAPAA- 310 (511)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~--~~~~~~~~v~~lh~~l~~~~r~~i~~~f~- 310 (511)
..++.+..+..+..++...+++++||||+++++++.+++.|.+....+ .....++.+.++||+|++++|.++++.|+
T Consensus 283 ~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~ 362 (773)
T 2xau_A 283 QRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362 (773)
T ss_dssp CSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCC
T ss_pred chhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccc
Confidence 889998888888888877778999999999999999999998643222 11224788999999999999999999999
Q ss_pred ----CCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecCh
Q 010422 311 ----AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (511)
Q Consensus 311 ----~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 386 (511)
+|.++|||||+++|+|||+|+|++|||+|+.+.+.||+..++..+...|.|.++|.||+|||||.++|.||+||++
T Consensus 363 ~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~ 442 (773)
T 2xau_A 363 SHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTE 442 (773)
T ss_dssp CSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCH
T ss_pred ccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhH-hhccCCCCCcccccCccHHHHHHHHcCCCCCCcccCCCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCC
Q 010422 387 NEF-DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLP 465 (511)
Q Consensus 387 ~~~-~~~~~~~~pei~~~~l~~~~L~~~~~~~~~~~~~~~~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~ 465 (511)
+++ +.+.+...|||.+.+|..++|+++.+|+.++..|+|++||+.+.+..|++.|..+|+||+++++|+ +|+.|+.+|
T Consensus 443 ~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~-lG~~~a~~p 521 (773)
T 2xau_A 443 EAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTP-LGRLASQFP 521 (773)
T ss_dssp HHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCH-HHHHHTTSS
T ss_pred HHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcCh-hhhhhcccc
Confidence 999 669999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred CCHHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhh
Q 010422 466 LDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGE 505 (511)
Q Consensus 466 ~~p~~~~~~~~~~~~~~~~~~l~i~a~l~~~~~~~~~~~~ 505 (511)
++|++|+||+.+..++|.+++++|+|+|+++++|..|.++
T Consensus 522 l~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~ 561 (773)
T 2xau_A 522 LDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKD 561 (773)
T ss_dssp SCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTC
T ss_pred CCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHH
Confidence 9999999999999999999999999999999999999764
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.7e-53 Score=459.12 Aligned_cols=438 Identities=17% Similarity=0.156 Sum_probs=308.9
Q ss_pred CCCHHHHHHHHHH-HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHH--hCCccCC
Q 010422 13 LPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE--SGVELGQ 89 (511)
Q Consensus 13 l~~~~~q~~~~~~-l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~--~~~~~~~ 89 (511)
-.++++|.+++.. +.++++++++||||||||+++++++++..... +.+++++.|+++++.++.+++... .+..++.
T Consensus 29 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~ 107 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAM 107 (715)
T ss_dssp CBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEE
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEE
Confidence 3689999999999 88999999999999999999999998765422 457999999999999999988422 2333333
Q ss_pred eeeEEEeecc-------cCChhhhHHHHh-hCc-CCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCC
Q 010422 90 RVGYSIRFDD-------RTSTSTRIKEAL-LDP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNN 160 (511)
Q Consensus 90 ~vg~~~~~~~-------~~~~~~~i~~~l-~~~-~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 160 (511)
.+|+...... ...+..++..++ .++ ++++++++|+||+|+.... .....++.+..+.
T Consensus 108 ~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~--~~~~~l~~i~~~~------------ 173 (715)
T 2va8_A 108 TSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDP--ERGPVVESVTIRA------------ 173 (715)
T ss_dssp CCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCT--TTHHHHHHHHHHH------------
T ss_pred EeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCc--ccchHHHHHHHhc------------
Confidence 3332222111 011223333332 233 3789999999999975421 1222333333222
Q ss_pred CCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCccccccEEEcCCC------
Q 010422 161 NNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYP------ 233 (511)
Q Consensus 161 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 233 (511)
+++|+|+||||+ |++.+++|++ .+.+..+.+++|+...+....
T Consensus 174 -----------------------------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 174 -----------------------------KRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp -----------------------------HTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEE
T ss_pred -----------------------------ccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccce
Confidence 367999999999 7999999997 456666677777654332111
Q ss_pred -----C---Cch--HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhc--CC--------------CC---
Q 010422 234 -----E---PDY--LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ--LP--------------EA--- 284 (511)
Q Consensus 234 -----~---~~~--~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~--~~--------------~~--- 284 (511)
. ... .......+...+ .+++++||||+|+++++.+++.|.+.... +. ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred eeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 0 000 123334444443 24799999999999999999999875321 00 00
Q ss_pred --------CCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccce
Q 010422 285 --------SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 356 (511)
Q Consensus 285 --------~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~ 356 (511)
.....+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++ ...||+..+..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~--- 374 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY--- 374 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-------------
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---
Confidence 001358889999999999999999999999999999999999999999999984 56688554332
Q ss_pred eeecCHHHHHHhccccCCCC---CCeEEEecChhh-Hhhcc---CCCCCcccccCccH------HHHHHHHcCCC----C
Q 010422 357 VVPISKAQALQRSGRAGREG---PGKCFRLYPENE-FDKLE---DSTKPEIKRCNLSN------VILQLKALGVD----D 419 (511)
Q Consensus 357 ~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~-~~~~~---~~~~pei~~~~l~~------~~L~~~~~~~~----~ 419 (511)
..|.|.++|.||+|||||.| +|.||.++++.+ +..+. ....||+.+.++.. .++.++..|.. +
T Consensus 375 ~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~ 454 (715)
T 2va8_A 375 YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQ 454 (715)
T ss_dssp ----CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHH
T ss_pred CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHH
Confidence 36999999999999999999 899999997765 32211 24567888777765 67777776632 2
Q ss_pred CCc---ccCCC-CCCHHHHHHHHHHHHHcCCcCCCC---CCCHHHHHHHccCCCCHHHHHHHHHhhhc---CCHHHHHHH
Q 010422 420 IIG---FDFME-KPSRASIIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPIYSKALIVAGQF---NCLEEMLIT 489 (511)
Q Consensus 420 ~~~---~~~~~-~p~~~~l~~al~~L~~~g~l~~~~---~~T~~lG~~~~~~~~~p~~~~~~~~~~~~---~~~~~~l~i 489 (511)
... ..|+. +|+...+..|++.|.+.|+|+.++ .+|+ +|+.++.+|++|.++++++.+... .|..+++.+
T Consensus 455 ~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~-lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (715)
T 2va8_A 455 LENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTN-FGKRVADLYINPFTADIIRKGLEGHKASCELAYLHL 533 (715)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECH-HHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeCh-HHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHH
Confidence 221 24443 455667999999999999998764 7997 999999999999999999999987 899999999
Q ss_pred HHhhcC-CCcccCChhh
Q 010422 490 VAMLSV-ESIFFRSPGE 505 (511)
Q Consensus 490 ~a~l~~-~~~~~~~~~~ 505 (511)
+|+.+. +++|.+|.++
T Consensus 534 i~~~~e~~~~~~r~~e~ 550 (715)
T 2va8_A 534 LAFTPDGPLVSVGRNEE 550 (715)
T ss_dssp HHHSTTSCCCCCCHHHH
T ss_pred hhcCcccccCccChHHH
Confidence 888774 6899888654
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-52 Score=453.70 Aligned_cols=430 Identities=18% Similarity=0.182 Sum_probs=321.2
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh--CCccCCee
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES--GVELGQRV 91 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~--~~~~~~~v 91 (511)
.++++|.+++..+.+|++++++||||||||+++++++++.... +.+++++.|+++++.++.+++..+. +..++..+
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 102 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIST 102 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEEC
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6889999999999999999999999999999999998876443 4578899999999999999874221 22222223
Q ss_pred eEEEeeccc-------CChhhhHHHHhh-Cc-CCCCCCchhHhhhhh-----hhhhhHHHHHHHHHHHHhhccccCCCCC
Q 010422 92 GYSIRFDDR-------TSTSTRIKEALL-DP-YLSRYSAIIVDEAHE-----RTVHTDVLLGLLKKVQNARSKSADGHSN 157 (511)
Q Consensus 92 g~~~~~~~~-------~~~~~~i~~~l~-~~-~l~~~~~iIiDE~H~-----r~~~~~~ll~~l~~~~~~~~~~~~~~~~ 157 (511)
|+....... ..+..++..++. ++ ++++++++|+||+|+ |....+.++..++. .+
T Consensus 103 G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~--------- 170 (702)
T 2p6r_A 103 GDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MN--------- 170 (702)
T ss_dssp SSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HC---------
T ss_pred CCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh---cC---------
Confidence 322221111 112333434333 23 378999999999997 44444444444432 12
Q ss_pred CCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCc
Q 010422 158 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPD 236 (511)
Q Consensus 158 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (511)
+++|+|+||||+ |.+++++|++ .+.+..+.++.|+...+...+...
T Consensus 171 --------------------------------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~ 217 (702)
T 2p6r_A 171 --------------------------------KALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLE 217 (702)
T ss_dssp --------------------------------TTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEE
T ss_pred --------------------------------cCceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeee
Confidence 678999999999 6999999997 556777778888776543322111
Q ss_pred hHH---------HHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCC---------------------C
Q 010422 237 YLD---------ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS---------------------R 286 (511)
Q Consensus 237 ~~~---------~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~---------------------~ 286 (511)
+.+ .....+..... +++++||||+|+++++.+++.|.+.+....... .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 295 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECV 295 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHH
T ss_pred ccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHH
Confidence 100 02223333332 478999999999999999999987643211100 0
Q ss_pred CeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHH
Q 010422 287 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (511)
Q Consensus 287 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~ 366 (511)
+..+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||++ ...|| +. ..|.|.++|.
T Consensus 296 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~ 364 (702)
T 2p6r_A 296 RKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYK 364 (702)
T ss_dssp HTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHH
T ss_pred hcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHH
Confidence 1347789999999999999999999999999999999999999999999984 66787 22 3699999999
Q ss_pred HhccccCCCC---CCeEEEecChhhHhhcc---CCCCCcccccCccH------HHHHHHHcCCC-C---CCc---ccCC-
Q 010422 367 QRSGRAGREG---PGKCFRLYPENEFDKLE---DSTKPEIKRCNLSN------VILQLKALGVD-D---IIG---FDFM- 426 (511)
Q Consensus 367 Qr~GRaGR~~---~G~~~~l~~~~~~~~~~---~~~~pei~~~~l~~------~~L~~~~~~~~-~---~~~---~~~~- 426 (511)
||+|||||.| +|.||.++++.+++.+. -...||+.+.++.. .++.....|.. + ... ..|+
T Consensus 365 Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~ 444 (702)
T 2p6r_A 365 QMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFF 444 (702)
T ss_dssp HHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTH
T ss_pred HHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHH
Confidence 9999999999 89999999988765432 24568888877765 56666776632 2 111 1333
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCcCCC--CCCCHHHHHHHccCCCCHHHHHHHHHhhhc--CCHHHHHHHHHhhcC-CCc
Q 010422 427 ---EKPSRASIIKSLEQLFLLGALTDD--CKLSDPVGHQMARLPLDPIYSKALIVAGQF--NCLEEMLITVAMLSV-ESI 498 (511)
Q Consensus 427 ---~~p~~~~l~~al~~L~~~g~l~~~--~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~--~~~~~~l~i~a~l~~-~~~ 498 (511)
.+|..+.+..|++.|.+.|+|+.+ ..+|+ +|+.++.+|++|.++++++.+... .|..+++.++|+.+. +++
T Consensus 445 ~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~-lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i 523 (702)
T 2p6r_A 445 KQNEISLSYELERVVRQLENWGMVVEAAHLAPTK-LGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERL 523 (702)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECH-HHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCC
T ss_pred HhhhHHHHHHHHHHHHHHHHCcCeeECCeeccCh-HHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccC
Confidence 367889999999999999999876 78997 999999999999999999999988 899999999998876 578
Q ss_pred ccCChh
Q 010422 499 FFRSPG 504 (511)
Q Consensus 499 ~~~~~~ 504 (511)
++++.+
T Consensus 524 ~~r~~e 529 (702)
T 2p6r_A 524 TVRKTD 529 (702)
T ss_dssp CCCTTT
T ss_pred CCCCch
Confidence 888876
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.5e-51 Score=446.56 Aligned_cols=442 Identities=15% Similarity=0.130 Sum_probs=308.9
Q ss_pred hHHHhhccCCCHHHHHHHHHH-HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~-l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
+..+....-.++++|.+++.. +.+|++++++||||||||+++++++++..... +.+++++.|+++++.++.+++..+.
T Consensus 14 ~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i~P~raLa~q~~~~~~~l~ 92 (720)
T 2zj8_A 14 STLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYIVPLKALAEEKFQEFQDWE 92 (720)
T ss_dssp HHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEECSSGGGHHHHHHHTGGGG
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHHHHHHH
Confidence 334443444789999999998 88999999999999999999988887655422 4579999999999999999885322
Q ss_pred CCccCCeeeEEEeeccc-----------CChhhhHHHHhh-C-cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcc
Q 010422 84 GVELGQRVGYSIRFDDR-----------TSTSTRIKEALL-D-PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~-----------~~~~~~i~~~l~-~-~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~ 150 (511)
..+..++...+.... ..+..++..++. + .++++++++|+||+|...
T Consensus 93 --~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~------------------- 151 (720)
T 2zj8_A 93 --KIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIG------------------- 151 (720)
T ss_dssp --GGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGG-------------------
T ss_pred --hcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccC-------------------
Confidence 123344433221110 112233333322 2 347889999999999321
Q ss_pred ccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCccccccEEE
Q 010422 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILY 229 (511)
Q Consensus 151 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (511)
+..++..++.++.++. .++|+|+||||+ |++.+++|++. +.+....++.|+...+
T Consensus 152 -------------------~~~r~~~~~~ll~~l~----~~~~ii~lSATl~n~~~~~~~l~~-~~~~~~~rp~~l~~~~ 207 (720)
T 2zj8_A 152 -------------------SRDRGATLEVILAHML----GKAQIIGLSATIGNPEELAEWLNA-ELIVSDWRPVKLRRGV 207 (720)
T ss_dssp -------------------CTTTHHHHHHHHHHHB----TTBEEEEEECCCSCHHHHHHHTTE-EEEECCCCSSEEEEEE
T ss_pred -------------------CCcccHHHHHHHHHhh----cCCeEEEEcCCcCCHHHHHHHhCC-cccCCCCCCCcceEEE
Confidence 1122222222222222 367999999999 89999999964 3455556666655433
Q ss_pred cCCCCCch-------HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCC-------------------
Q 010422 230 TLYPEPDY-------LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE------------------- 283 (511)
Q Consensus 230 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~------------------- 283 (511)
...+...+ .......+.+... +++++||||+|+++++.++..|.+.......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 285 (720)
T 2zj8_A 208 FYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285 (720)
T ss_dssp EETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHH
T ss_pred EeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccc
Confidence 21111000 1111222222222 3789999999999999999999875432100
Q ss_pred -----CCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceee
Q 010422 284 -----ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 358 (511)
Q Consensus 284 -----~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~ 358 (511)
+.....+.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||+. ...|| ..|. .
T Consensus 286 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~----~~~yd-~~g~-----~ 355 (720)
T 2zj8_A 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRD----IWRYS-DFGM-----E 355 (720)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECC----SEECC-SSSC-----E
T ss_pred hHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcC----Ceeec-CCCC-----c
Confidence 0001248999999999999999999999999999999999999999999999983 35676 2222 5
Q ss_pred ecCHHHHHHhccccCCCC---CCeEEEecChhhHh----hccCCCCCccccc-----CccHHHHHHHHcCCC-C---CCc
Q 010422 359 PISKAQALQRSGRAGREG---PGKCFRLYPENEFD----KLEDSTKPEIKRC-----NLSNVILQLKALGVD-D---IIG 422 (511)
Q Consensus 359 p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~----~~~~~~~pei~~~-----~l~~~~L~~~~~~~~-~---~~~ 422 (511)
|.|..+|.||+|||||.| .|.||.++++.+++ .+.....+++... .+...++.....+.. + +..
T Consensus 356 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~ 435 (720)
T 2zj8_A 356 RIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILK 435 (720)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHH
T ss_pred cCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHH
Confidence 899999999999999998 79999999877633 3444444444332 344556666665532 1 111
Q ss_pred ---ccCC------CCCCHHHHHHHHHHHHHcCCcC-CCC---CCCHHHHHHHccCCCCHHHHHHHHHhhhc----CCHHH
Q 010422 423 ---FDFM------EKPSRASIIKSLEQLFLLGALT-DDC---KLSDPVGHQMARLPLDPIYSKALIVAGQF----NCLEE 485 (511)
Q Consensus 423 ---~~~~------~~p~~~~l~~al~~L~~~g~l~-~~~---~~T~~lG~~~~~~~~~p~~~~~~~~~~~~----~~~~~ 485 (511)
+.|+ +++..+.+..+++.|.+.|+|+ .++ .+|+ +|+.++.+|++|.++++++.+... .|..+
T Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~-lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (720)
T 2zj8_A 436 FISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLS-LGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIG 514 (720)
T ss_dssp HHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECH-HHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeCh-HHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHH
Confidence 2332 2233468999999999999998 655 6897 999999999999999999999887 89999
Q ss_pred HHHHHHhhcC-CCcccCChhh
Q 010422 486 MLITVAMLSV-ESIFFRSPGE 505 (511)
Q Consensus 486 ~l~i~a~l~~-~~~~~~~~~~ 505 (511)
++.++|+++. +++|++|.++
T Consensus 515 ~l~i~~~~~e~~~i~~r~~e~ 535 (720)
T 2zj8_A 515 IFHLISLTPDITPFNYSKREF 535 (720)
T ss_dssp HHHHHHTSTTCCCCCCCHHHH
T ss_pred HHHHhccCccccccccCHHHH
Confidence 9999999986 6899888653
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-42 Score=399.27 Aligned_cols=442 Identities=13% Similarity=0.127 Sum_probs=303.6
Q ss_pred CHHHHHHHHHHHh-cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeE
Q 010422 15 IASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGY 93 (511)
Q Consensus 15 ~~~~q~~~~~~l~-~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~ 93 (511)
.+++|.+++..+. .+++++++||||||||+++.+++++.....++.+++++.|+++++.+..+.+.+.++...+..++.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 6789999999985 567899999999999999988888877665666799999999999999999888777666666664
Q ss_pred EEeec-----------ccCChhhhHHHHhh----CcCCCCCCchhHhhhhhhhhh----hHHHHHHHHHHHHhhccccCC
Q 010422 94 SIRFD-----------DRTSTSTRIKEALL----DPYLSRYSAIIVDEAHERTVH----TDVLLGLLKKVQNARSKSADG 154 (511)
Q Consensus 94 ~~~~~-----------~~~~~~~~i~~~l~----~~~l~~~~~iIiDE~H~r~~~----~~~ll~~l~~~~~~~~~~~~~ 154 (511)
..+.. -.+.+.+++..++. ...+++++++|+||+|..... .+.++..++.+...
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~------- 1079 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQ------- 1079 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHT-------
T ss_pred EECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhh-------
Confidence 32210 01122333333332 234778999999999954322 12222222222211
Q ss_pred CCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCCCC--eEEeCCcccc--ccEEE
Q 010422 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAK--AVHVQGRQFP--VEILY 229 (511)
Q Consensus 155 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~--~~~~~~~~~~--~~~~~ 229 (511)
...++|+|+||||+ |++++++|++..+ .+.+....+| .+.+.
T Consensus 1080 ---------------------------------~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i 1126 (1724)
T 4f92_B 1080 ---------------------------------IERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHI 1126 (1724)
T ss_dssp ---------------------------------TSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEE
T ss_pred ---------------------------------cCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEE
Confidence 11678999999999 9999999998643 4445444444 44444
Q ss_pred cCCCCCchHHHHH---HHHH-HHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCC---------------------
Q 010422 230 TLYPEPDYLDATL---ITIF-QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA--------------------- 284 (511)
Q Consensus 230 ~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~--------------------- 284 (511)
............. ..+. .+....+++++||||+|++.|+.++..|...+......
T Consensus 1127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~ 1206 (1724)
T 4f92_B 1127 QGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDS 1206 (1724)
T ss_dssp EEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCH
T ss_pred EeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccH
Confidence 3333333222211 1111 12234557899999999999999998887654321110
Q ss_pred ----CCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeec
Q 010422 285 ----SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 360 (511)
Q Consensus 285 ----~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~ 360 (511)
....+|..|||||++++|..+++.|++|.++|||||+++++|||+|++++||. ....||...... .|.
T Consensus 1207 ~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~----~~~~~dg~~~~~----~~~ 1278 (1724)
T 4f92_B 1207 TLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIM----DTQYYNGKIHAY----VDY 1278 (1724)
T ss_dssp HHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEE----CSEEEETTTTEE----EEC
T ss_pred HHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEe----cCccccCccccc----CCC
Confidence 01235889999999999999999999999999999999999999999999997 556687654432 589
Q ss_pred CHHHHHHhccccCCCC---CCeEEEecChhhH---hhccCCCCC--cccccCccHHHHHHHHcCCCCC-------CcccC
Q 010422 361 SKAQALQRSGRAGREG---PGKCFRLYPENEF---DKLEDSTKP--EIKRCNLSNVILQLKALGVDDI-------IGFDF 425 (511)
Q Consensus 361 s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~---~~~~~~~~p--ei~~~~l~~~~L~~~~~~~~~~-------~~~~~ 425 (511)
+..+|.||+|||||.| .|.|+.++.+.+. +.+.....| .-+...+...++.....|.-.. ....|
T Consensus 1279 s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tf 1358 (1724)
T 4f92_B 1279 PIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTF 1358 (1724)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSS
T ss_pred CHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhH
Confidence 9999999999999999 6999999865543 333332222 2234455566666655543111 00111
Q ss_pred C-------------C--------CCCHHHHHHHHHHHHHcCCcC--CCC--CCCHHHHHHHccCCCCHHHHHHHHHhhhc
Q 010422 426 M-------------E--------KPSRASIIKSLEQLFLLGALT--DDC--KLSDPVGHQMARLPLDPIYSKALIVAGQF 480 (511)
Q Consensus 426 ~-------------~--------~p~~~~l~~al~~L~~~g~l~--~~~--~~T~~lG~~~~~~~~~p~~~~~~~~~~~~ 480 (511)
+ . ....+.++.+++.|++.|+|+ +++ ..|+ +|++++.++++|..++++..++..
T Consensus 1359 l~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~-lG~i~s~~yi~~~t~~~~~~~l~~ 1437 (1724)
T 4f92_B 1359 LYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLN-LGMIAAYYYINYTTIELFSMSLNA 1437 (1724)
T ss_dssp HHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECH-HHHHHHHTTCCHHHHHHHHHHCCT
T ss_pred HHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecH-HHHHHHHHCCCHHHHHHHHHhccc
Confidence 1 1 112345788999999999994 333 4686 999999999999999999988766
Q ss_pred CCH-HHHHHHHHhhcC-CCcccCChhh
Q 010422 481 NCL-EEMLITVAMLSV-ESIFFRSPGE 505 (511)
Q Consensus 481 ~~~-~~~l~i~a~l~~-~~~~~~~~~~ 505 (511)
.+. ..+|.++|..+. .++.+++.++
T Consensus 1438 ~~~~~~~L~il~~a~ef~~i~~R~~E~ 1464 (1724)
T 4f92_B 1438 KTKVRGLIEIISNAAEYENIPIRHHED 1464 (1724)
T ss_dssp TCCHHHHHHHHHTSGGGTTCCCCTTHH
T ss_pred cCCHHHHHHHhcCCcccccccccccHH
Confidence 654 456666665444 3566666543
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.8e-42 Score=394.17 Aligned_cols=441 Identities=15% Similarity=0.160 Sum_probs=294.7
Q ss_pred CHHHHHHHHHHH-hcCCEEEEEcCCCCchhchHHHHHhhcccc---------CCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 15 IASVEKRLVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGFC---------RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 15 ~~~~q~~~~~~l-~~~~~~~i~apTGsGKTt~~~~~l~~~~~~---------~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
++++|.++++.+ ..++|++++||||||||.++.+++++.... .++.+++++.|+++++.+..+.+.+..+
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 578999999875 578999999999999998887777654432 2356899999999999999998877664
Q ss_pred CccCCeeeEEEeecc-----------cCChhhhHHHHhhC----cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 85 VELGQRVGYSIRFDD-----------RTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~-----------~~~~~~~i~~~l~~----~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
..|..++...+... .+.+.+++..++.. .++++++++|+||+|....
T Consensus 160 -~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d----------------- 221 (1724)
T 4f92_B 160 -TYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD----------------- 221 (1724)
T ss_dssp -TTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-----------------
T ss_pred -hCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-----------------
Confidence 23444442221111 11233444444432 2477899999999993211
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCcccccccc---ccCCCCccEEEeccCC-CHHHHHhhhCCCC---eEEeCCcc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ---GRKFAPLKLIIMSASL-DARGFSEYFGCAK---AVHVQGRQ 222 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~---~~~~~~~~ 222 (511)
.||+.+|.+ +.++. ....+++|+|+||||+ |.+++++|++..+ ...+....
T Consensus 222 ----------~RG~~lE~~------------l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~ 279 (1724)
T 4f92_B 222 ----------DRGPVLEAL------------VARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSF 279 (1724)
T ss_dssp ----------TTHHHHHHH------------HHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGG
T ss_pred ----------ccHHHHHHH------------HHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCC
Confidence 122222221 11111 0011678999999999 9999999998653 34555555
Q ss_pred ccccE--EEcCCCCCchHH--HHH-HHHHHH-hhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCC-------------
Q 010422 223 FPVEI--LYTLYPEPDYLD--ATL-ITIFQV-HLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE------------- 283 (511)
Q Consensus 223 ~~~~~--~~~~~~~~~~~~--~~~-~~~~~~-~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~------------- 283 (511)
+|+.. ++.......... ... ..+... .....++++||||+||+.|+.+++.|.+.......
T Consensus 280 RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~ 359 (1724)
T 4f92_B 280 RPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTE 359 (1724)
T ss_dssp CSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSS
T ss_pred ccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHH
Confidence 55543 333333322221 111 122222 22334678999999999999999999876432110
Q ss_pred ---------------CCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecC
Q 010422 284 ---------------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348 (511)
Q Consensus 284 ---------------~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~ 348 (511)
+....++..|||||++++|..+++.|++|.++|||||+++++|||+|++++||. ..+.||+
T Consensus 360 ~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~----~~~~~~~ 435 (1724)
T 4f92_B 360 VLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYSP 435 (1724)
T ss_dssp HHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE----CCEEEET
T ss_pred HHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEe----CCEEecC
Confidence 011345889999999999999999999999999999999999999999999997 6778998
Q ss_pred CCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChhhH---hhccCCCCC--cccccCccHHHHHHHHcCC-CC
Q 010422 349 VKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF---DKLEDSTKP--EIKRCNLSNVILQLKALGV-DD 419 (511)
Q Consensus 349 ~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~---~~~~~~~~p--ei~~~~l~~~~L~~~~~~~-~~ 419 (511)
..+.. .|.+..+|.||+|||||+| .|.++.+.+.++. ..+.....| .-+...+...+++...+|. .+
T Consensus 436 ~~~~~----~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~ 511 (1724)
T 4f92_B 436 EKGRW----TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQN 511 (1724)
T ss_dssp TTTEE----EECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCB
T ss_pred cCCCc----ccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCC
Confidence 77643 5899999999999999998 7999999866543 333332222 1223344455554444432 11
Q ss_pred CC--------------------cc----------cCCCCCCHHHHHHHHHHHHHcCCcCCC---C--CCCHHHHHHHccC
Q 010422 420 II--------------------GF----------DFMEKPSRASIIKSLEQLFLLGALTDD---C--KLSDPVGHQMARL 464 (511)
Q Consensus 420 ~~--------------------~~----------~~~~~p~~~~l~~al~~L~~~g~l~~~---~--~~T~~lG~~~~~~ 464 (511)
.. .+ +.++....+.+..++..|.+.|+|..+ + ..|+ +|++++++
T Consensus 512 ~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~-lGr~~s~~ 590 (1724)
T 4f92_B 512 AKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTE-LGRIASHY 590 (1724)
T ss_dssp HHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECH-HHHHHHHT
T ss_pred HHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccch-HHHHHHHh
Confidence 10 00 011111234578899999999999422 2 5897 99999999
Q ss_pred CCCHHHHHHHHHhhhcCCHH-HHHHHHHhhcCC-CcccCChh
Q 010422 465 PLDPIYSKALIVAGQFNCLE-EMLITVAMLSVE-SIFFRSPG 504 (511)
Q Consensus 465 ~~~p~~~~~~~~~~~~~~~~-~~l~i~a~l~~~-~~~~~~~~ 504 (511)
+++|..++.+.......+.+ +++.++|+.+.. ++..+..+
T Consensus 591 yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E 632 (1724)
T 4f92_B 591 YITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEE 632 (1724)
T ss_dssp TCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGG
T ss_pred cCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHH
Confidence 99999999999887666544 566677665543 55555543
No 7
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.1e-39 Score=329.93 Aligned_cols=306 Identities=17% Similarity=0.208 Sum_probs=216.1
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc------CCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC------RDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~------~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
....-.++++|+++++.+.+|++++++||||||||..+..+++..... ..+..++++.|+++++.|+.+.+.++
T Consensus 73 ~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 73 KSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 344445899999999999999999999999999997665555543322 22457999999999999999987766
Q ss_pred hCCccCCeeeEEEee--------------cccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHH
Q 010422 83 SGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (511)
Q Consensus 83 ~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~ 146 (511)
... .+..++..... +-.+.+..++..++.. ..+.+++++|+||||.
T Consensus 153 ~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~----------------- 214 (434)
T 2db3_A 153 AFE-SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADR----------------- 214 (434)
T ss_dssp TTT-SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHH-----------------
T ss_pred hcc-CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhh-----------------
Confidence 532 22222221111 1112233444444443 2478899999999994
Q ss_pred hhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH--HHH-hhhCCCCeEEeCCc--
Q 010422 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQGR-- 221 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~l~-~~~~~~~~~~~~~~-- 221 (511)
|++.++...+..++..+.. .++.++++||||++.+ .++ .|+.+...+.+...
T Consensus 215 ---------------------~~~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~ 271 (434)
T 2db3_A 215 ---------------------MLDMGFSEDMRRIMTHVTM--RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG 271 (434)
T ss_dssp ---------------------HTSTTTHHHHHHHHHCTTS--CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC
T ss_pred ---------------------hhccCcHHHHHHHHHhcCC--CCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc
Confidence 3333333333333332211 1678999999999543 333 55554444444321
Q ss_pred -cccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHH
Q 010422 222 -QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (511)
Q Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~ 300 (511)
...+...+.......... .+..+.... .+++||||++++.++.+++.|.+. ++.+..+||+++++
T Consensus 272 ~~~~i~~~~~~~~~~~k~~----~l~~~l~~~-~~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~ 337 (434)
T 2db3_A 272 ACSDVKQTIYEVNKYAKRS----KLIEILSEQ-ADGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQS 337 (434)
T ss_dssp CCTTEEEEEEECCGGGHHH----HHHHHHHHC-CTTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHH
T ss_pred cccccceEEEEeCcHHHHH----HHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCCCCHH
Confidence 122333333333333222 233333333 345999999999999999999886 78899999999999
Q ss_pred HHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCe
Q 010422 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (511)
Q Consensus 301 ~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~ 379 (511)
+|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| .|.
T Consensus 338 ~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d----------~p~~~~~y~qriGR~gR~g~~G~ 399 (434)
T 2db3_A 338 QREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YD----------MPSKIDDYVHRIGRTGRVGNNGR 399 (434)
T ss_dssp HHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SS----------CCSSHHHHHHHHTTSSCTTCCEE
T ss_pred HHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------EC----------CCCCHHHHHHHhcccccCCCCCE
Confidence 9999999999999999999999999999999999999 77 5889999999999999999 999
Q ss_pred EEEecChh
Q 010422 380 CFRLYPEN 387 (511)
Q Consensus 380 ~~~l~~~~ 387 (511)
|+.+++++
T Consensus 400 a~~~~~~~ 407 (434)
T 2db3_A 400 ATSFFDPE 407 (434)
T ss_dssp EEEEECTT
T ss_pred EEEEEecc
Confidence 99999854
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.5e-38 Score=322.48 Aligned_cols=317 Identities=13% Similarity=0.146 Sum_probs=220.3
Q ss_pred HHhhccCCCHHHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
+.......++++|.+++..+.++ ++++++||||||||..+..+++...... .+.+++++.|++.++.|+.+.+.+..
T Consensus 40 l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 40 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 33445557899999999999987 8999999999999988777777655433 34478899999999999998887765
Q ss_pred CCccCCeeeEEEeecc-----------cCChhhhHHHHhhC---cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 84 GVELGQRVGYSIRFDD-----------RTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~-----------~~~~~~~i~~~l~~---~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
....+..+++...... .+.+...+..++.. ..+.+++++|+||+|......... ..+..+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~-~~~~~~~~~-- 196 (412)
T 3fht_A 120 KFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQ-DQSIRIQRM-- 196 (412)
T ss_dssp TTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTH-HHHHHHHHT--
T ss_pred hhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcH-HHHHHHHhh--
Confidence 4333344444332211 11233344444432 235789999999999643211111 111111110
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH--H-HHhhhCCCCeEEeCCcccc--
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--G-FSEYFGCAKAVHVQGRQFP-- 224 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~-l~~~~~~~~~~~~~~~~~~-- 224 (511)
+ ..+.++++||||++.. . ...++.....+........
T Consensus 197 ----------------------------------~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (412)
T 3fht_A 197 ----------------------------------L----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD 238 (412)
T ss_dssp ----------------------------------S----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCT
T ss_pred ----------------------------------C----CCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccccccc
Confidence 0 1568999999999553 3 3345554444443332221
Q ss_pred -ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 010422 225 -VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (511)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 303 (511)
+...+..... .......+..+......+++||||+++++++.+++.|.+. +..+..+||+|+.++|.
T Consensus 239 ~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~ 306 (412)
T 3fht_A 239 TIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRA 306 (412)
T ss_dssp TEEEEEEECSS---HHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHH
T ss_pred CceEEEEEcCC---hHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHHHHH
Confidence 2222222222 2333444444554455789999999999999999999886 77899999999999999
Q ss_pred hhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEE
Q 010422 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (511)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (511)
++++.|++|+.+|||||+++++|+|+|++++||+ ||...... .+.+..+|+||+|||||.| .|.|+.
T Consensus 307 ~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~----~~~s~~~~~Qr~GR~gR~g~~g~~~~ 374 (412)
T 3fht_A 307 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKD----GNPDNETYLHRIGRTGRFGKRGLAVN 374 (412)
T ss_dssp HHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE--------SSCCBCSS----SSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred HHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE--------ECCCCCCC----CCcchheeecccCcccCCCCCceEEE
Confidence 9999999999999999999999999999999999 55221111 1268899999999999999 799999
Q ss_pred ecChhh
Q 010422 383 LYPENE 388 (511)
Q Consensus 383 l~~~~~ 388 (511)
+++..+
T Consensus 375 ~~~~~~ 380 (412)
T 3fht_A 375 MVDSKH 380 (412)
T ss_dssp EECSHH
T ss_pred EEcChh
Confidence 998654
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.8e-40 Score=333.87 Aligned_cols=313 Identities=15% Similarity=0.242 Sum_probs=208.6
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.+.......++++|++++..+.+|++++++||||||||+++.++++...... .+.+++++.|++.++.|+.+.+.+...
T Consensus 54 ~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 133 (414)
T 3eiq_A 54 GIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD 133 (414)
T ss_dssp HHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG
T ss_pred HHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc
Confidence 3444556679999999999999999999999999999988888887665433 355789999999999999988877543
Q ss_pred CccCCeeeEEEeecc---------------cCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHh
Q 010422 85 VELGQRVGYSIRFDD---------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~---------------~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~ 147 (511)
..+..++....... .+.+..++...+.. ..+.+++++|+||+|+..... +...+..+
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~~--- 207 (414)
T 3eiq_A 134 -YMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG--FKDQIYDI--- 207 (414)
T ss_dssp -GSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT--THHHHHHH---
T ss_pred -ccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC--cHHHHHHH---
Confidence 22233322211110 11222333333322 236678999999999632211 11111111
Q ss_pred hccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHH--H-HhhhCCCCeEEeCCccc-
Q 010422 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG--F-SEYFGCAKAVHVQGRQF- 223 (511)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--l-~~~~~~~~~~~~~~~~~- 223 (511)
+..+. ++.++++||||++.+. + ..++.+...+.......
T Consensus 208 ---------------------------------~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (414)
T 3eiq_A 208 ---------------------------------FQKLN----SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT 250 (414)
T ss_dssp ---------------------------------HTTSC----TTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCC
T ss_pred ---------------------------------HHhCC----CCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccC
Confidence 11111 6789999999995433 2 34554443333332222
Q ss_pred --cccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH
Q 010422 224 --PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (511)
Q Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~ 301 (511)
.+...+......+. ....+..+......+++||||+++++++.+++.|.+. ++.+..+||++++++
T Consensus 251 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~ 318 (414)
T 3eiq_A 251 LEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKE 318 (414)
T ss_dssp TTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHH
T ss_pred CCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCHHH
Confidence 22333333333332 2334445555566789999999999999999999875 788999999999999
Q ss_pred HHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeE
Q 010422 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (511)
Q Consensus 302 r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~ 380 (511)
|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| .|.|
T Consensus 319 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g~~ 380 (414)
T 3eiq_A 319 RDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------YD----------LPTNRENYIHRIGRGGRFGRKGVA 380 (414)
T ss_dssp HHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE--------SS----------CCSSTHHHHHHSCCC-------CE
T ss_pred HHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE--------eC----------CCCCHHHhhhhcCcccCCCCCceE
Confidence 999999999999999999999999999999999999 66 5889999999999999998 8999
Q ss_pred EEecChhhHhh
Q 010422 381 FRLYPENEFDK 391 (511)
Q Consensus 381 ~~l~~~~~~~~ 391 (511)
|.++++++...
T Consensus 381 ~~~~~~~~~~~ 391 (414)
T 3eiq_A 381 INMVTEEDKRT 391 (414)
T ss_dssp EEEECSTHHHH
T ss_pred EEEEcHHHHHH
Confidence 99999876654
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.3e-37 Score=315.06 Aligned_cols=318 Identities=16% Similarity=0.173 Sum_probs=220.7
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHH
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
+.+.......++++|.+++..+.++ +++++++|||||||..+..+++...... .+.+++++.|++.++.|+.+.+.+
T Consensus 18 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 97 (395)
T 3pey_A 18 KGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQE 97 (395)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHH
Confidence 3344445567999999999999988 8999999999999988877777665432 355789999999999999998776
Q ss_pred HhCCccCCeeeEEEeec----------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 82 ESGVELGQRVGYSIRFD----------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 82 ~~~~~~~~~vg~~~~~~----------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
... ..+..++...... -...+...+...+.. ..+.+++++|+||+|.......... .+..+....
T Consensus 98 ~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~-~~~~~~~~~- 174 (395)
T 3pey_A 98 MGK-FTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD-QCIRVKRFL- 174 (395)
T ss_dssp HTT-TSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHH-HHHHHHHTS-
T ss_pred Hhc-ccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHH-HHHHHHHhC-
Confidence 543 2222222221110 111223344444433 2477899999999997554322211 111111111
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHH-hhhCCCCeEEeCCccccc-
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGRQFPV- 225 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~-~~~~~~~~~~~~~~~~~~- 225 (511)
..+.++++||||++. ..+. .++.....+.........
T Consensus 175 ---------------------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (395)
T 3pey_A 175 ---------------------------------------PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVD 215 (395)
T ss_dssp ---------------------------------------CTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCT
T ss_pred ---------------------------------------CCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccc
Confidence 156799999999954 3343 344444333333322221
Q ss_pred --cEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 010422 226 --EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (511)
Q Consensus 226 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 303 (511)
...+.... ........+..+......+++||||++++.++.+++.|.+. +..+..+||+++.++|.
T Consensus 216 ~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~ 283 (395)
T 3pey_A 216 AIKQLYMDCK---NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQERD 283 (395)
T ss_dssp TEEEEEEECS---SHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHH
T ss_pred cccEEEEEcC---chHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHH
Confidence 22222222 22333444455555556789999999999999999999876 77899999999999999
Q ss_pred hhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEE
Q 010422 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (511)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (511)
++++.|++|+.+|||||+++++|+|+|++++||+ ||...... .+.+..+|+||+|||||.| .|.|+.
T Consensus 284 ~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~----~~~s~~~~~Qr~GR~gR~g~~g~~~~ 351 (395)
T 3pey_A 284 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YDLPTLAN----GQADPATYIHRIGRTGRFGRKGVAIS 351 (395)
T ss_dssp HHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE--------SSCCBCTT----SSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred HHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE--------cCCCCCCc----CCCCHHHhhHhccccccCCCCceEEE
Confidence 9999999999999999999999999999999999 66321111 2359999999999999999 799999
Q ss_pred ecChhh
Q 010422 383 LYPENE 388 (511)
Q Consensus 383 l~~~~~ 388 (511)
++...+
T Consensus 352 ~~~~~~ 357 (395)
T 3pey_A 352 FVHDKN 357 (395)
T ss_dssp EECSHH
T ss_pred EEechH
Confidence 997644
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=323.68 Aligned_cols=316 Identities=16% Similarity=0.182 Sum_probs=213.7
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-------------------CCCeEEEEeC
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-------------------RDGKLIGVTQ 66 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-------------------~~~~~i~~~~ 66 (511)
.++......++++|+++++.+.+|++++++||||||||..+..+++..... ..+.+++++.
T Consensus 29 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 108 (417)
T 2i4i_A 29 NIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 108 (417)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEEC
T ss_pred HHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEEC
Confidence 344445567999999999999999999999999999997665555433211 1124689999
Q ss_pred ccHHHHHHHHHHHHHHhCCccCCeeeEEEeec--------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhh
Q 010422 67 PRRVAAVTVAKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 130 (511)
Q Consensus 67 p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r 130 (511)
|++.++.|+.+.+.+.... .+..++...... -.+.+..++...+.. ..+.+++++|+||+|..
T Consensus 109 Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~ 187 (417)
T 2i4i_A 109 PTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRM 187 (417)
T ss_dssp SSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHH
T ss_pred CcHHHHHHHHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHh
Confidence 9999999999988776532 222222221111 111223333344333 24678999999999953
Q ss_pred hhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHH-
Q 010422 131 TVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS- 207 (511)
Q Consensus 131 ~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~- 207 (511)
..+. +...++.+... .........++++||||++. ..+.
T Consensus 188 ~~~~--~~~~~~~i~~~------------------------------------~~~~~~~~~~~i~~SAT~~~~~~~~~~ 229 (417)
T 2i4i_A 188 LDMG--FEPQIRRIVEQ------------------------------------DTMPPKGVRHTMMFSATFPKEIQMLAR 229 (417)
T ss_dssp HHTT--CHHHHHHHHTS------------------------------------SSCCCBTTBEEEEEESCCCHHHHHHHH
T ss_pred hccC--cHHHHHHHHHh------------------------------------ccCCCcCCcEEEEEEEeCCHHHHHHHH
Confidence 3221 11122222111 01011146789999999944 3333
Q ss_pred hhhCCCCeEEeCCcc---ccccEEEcCCCCCchHHHHHHHHHHHhhc-CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCC
Q 010422 208 EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQLPE 283 (511)
Q Consensus 208 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~ 283 (511)
.|+++...+.+.... ..+...+......+... .+..+... ..++++||||+++++++.+++.|.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------ 299 (417)
T 2i4i_A 230 DFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE------ 299 (417)
T ss_dssp HHCSSCEEEEEC----CCSSEEEEEEECCGGGHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT------
T ss_pred HHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC------
Confidence 455544333332211 11222232222222222 22233322 34778999999999999999999875
Q ss_pred CCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHH
Q 010422 284 ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKA 363 (511)
Q Consensus 284 ~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~ 363 (511)
++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..
T Consensus 300 ---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~----------~p~s~~ 358 (417)
T 2i4i_A 300 ---GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD----------LPSDIE 358 (417)
T ss_dssp ---TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SS----------CCSSHH
T ss_pred ---CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------Ec----------CCCCHH
Confidence 788999999999999999999999999999999999999999999999999 66 588999
Q ss_pred HHHHhccccCCCC-CCeEEEecChhhHhh
Q 010422 364 QALQRSGRAGREG-PGKCFRLYPENEFDK 391 (511)
Q Consensus 364 ~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 391 (511)
+|+||+||+||.| .|.|+.++++++...
T Consensus 359 ~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 359 EYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp HHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred HHHHhcCccccCCCCceEEEEEccccHHH
Confidence 9999999999999 899999999887654
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.7e-38 Score=322.18 Aligned_cols=308 Identities=14% Similarity=0.242 Sum_probs=216.1
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-CCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
..-.++++|++++..+.+|+++++++|||||||..+..+++..... ..+.+++++.|++.++.|+.+.+.++.. ..+.
T Consensus 56 g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~ 134 (410)
T 2j0s_A 56 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGD-YMNV 134 (410)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT-TTTC
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhc-cCCe
Confidence 3345899999999999999999999999999998877777665432 2356789999999999999998776543 2233
Q ss_pred eeeEEEeec--------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccC
Q 010422 90 RVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (511)
Q Consensus 90 ~vg~~~~~~--------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~ 153 (511)
.++...... -...+...+...+.. ..+.+++++|+||+|...... +...+..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~---------- 202 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG--FKEQIYD---------- 202 (410)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT--THHHHHH----------
T ss_pred EEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh--hHHHHHH----------
Confidence 333221111 011222333333333 346778999999999532211 1111111
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHH---HHhhhCCCCeEEeCCccc---cccE
Q 010422 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFGCAKAVHVQGRQF---PVEI 227 (511)
Q Consensus 154 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~---l~~~~~~~~~~~~~~~~~---~~~~ 227 (511)
++..+. ++.++++||||++.+. ...++.++..+.+..... .+..
T Consensus 203 --------------------------i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (410)
T 2j0s_A 203 --------------------------VYRYLP----PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQ 252 (410)
T ss_dssp --------------------------HHTTSC----TTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEE
T ss_pred --------------------------HHHhCc----cCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceE
Confidence 111111 5679999999995543 234554433333322221 2223
Q ss_pred EEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcC
Q 010422 228 LYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFA 307 (511)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~ 307 (511)
.+......+.... .+..+......+++||||++++.++.+++.|.+. ++.+..+||++++++|..+++
T Consensus 253 ~~~~~~~~~~k~~---~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~ 320 (410)
T 2j0s_A 253 FFVAVEREEWKFD---TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMK 320 (410)
T ss_dssp EEEEESSTTHHHH---HHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHH
T ss_pred EEEEeCcHHhHHH---HHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHHHHHHHH
Confidence 3333333332222 2333333334679999999999999999999886 778999999999999999999
Q ss_pred cCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecCh
Q 010422 308 PAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPE 386 (511)
Q Consensus 308 ~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~ 386 (511)
.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| .|.|+.++++
T Consensus 321 ~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 382 (410)
T 2j0s_A 321 EFRSGASRVLISTDVWARGLDVPQVSLIIN--------YD----------LPNNRELYIHRIGRSGRYGRKGVAINFVKN 382 (410)
T ss_dssp HHHHTSSCEEEECGGGSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEEEG
T ss_pred HHHCCCCCEEEECChhhCcCCcccCCEEEE--------EC----------CCCCHHHHHHhcccccCCCCceEEEEEecH
Confidence 999999999999999999999999999999 77 5889999999999999998 9999999988
Q ss_pred hhHhh
Q 010422 387 NEFDK 391 (511)
Q Consensus 387 ~~~~~ 391 (511)
++...
T Consensus 383 ~~~~~ 387 (410)
T 2j0s_A 383 DDIRI 387 (410)
T ss_dssp GGHHH
T ss_pred HHHHH
Confidence 77543
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-37 Score=311.53 Aligned_cols=310 Identities=18% Similarity=0.261 Sum_probs=222.9
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcC-CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~-~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.++......++++|++++..+.++ +++++.+|||||||+++..+++......++.+++++.|++.++.+..+.+.+..+
T Consensus 20 ~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 99 (367)
T 1hv8_A 20 AIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKG 99 (367)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhC
Confidence 344445557899999999999888 6999999999999988777777665544566789999999999999999888765
Q ss_pred CccCCeeeEEEeecc-------------cCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 85 VELGQRVGYSIRFDD-------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~-------------~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
.. +..++....... ...+...+...+.. ..+.+++++|+||+|....+. +...+..+....
T Consensus 100 ~~-~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~--~~~~~~~~~~~~- 175 (367)
T 1hv8_A 100 NK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG--FIKDVEKILNAC- 175 (367)
T ss_dssp SS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT--THHHHHHHHHTS-
T ss_pred CC-CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc--hHHHHHHHHHhC-
Confidence 32 222221111110 01122233333332 346789999999999653322 111122221111
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhhhCCCCeEEeCCcccccc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFPVE 226 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~~~~~~~~~~~~~~~~~~ 226 (511)
.++.++++||||++.+ .+..++++...+... ....+.
T Consensus 176 ---------------------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 215 (367)
T 1hv8_A 176 ---------------------------------------NKDKRILLFSATMPREILNLAKKYMGDYSFIKAK-INANIE 215 (367)
T ss_dssp ---------------------------------------CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC-SSSSSE
T ss_pred ---------------------------------------CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec-CCCCce
Confidence 1567999999999554 234566654333332 223444
Q ss_pred EEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhc
Q 010422 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 306 (511)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 306 (511)
..+......+.... +..... ..++++||||+++++++.+++.|.+. +..+..+||+++.++|.+++
T Consensus 216 ~~~~~~~~~~~~~~----l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~ 281 (367)
T 1hv8_A 216 QSYVEVNENERFEA----LCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREKVI 281 (367)
T ss_dssp EEEEECCGGGHHHH----HHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHHHH
T ss_pred EEEEEeChHHHHHH----HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHHHH
Confidence 44444444333333 233333 45788999999999999999999875 77899999999999999999
Q ss_pred CcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecC
Q 010422 307 APAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (511)
Q Consensus 307 ~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (511)
+.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| +|.|+.+++
T Consensus 282 ~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 343 (367)
T 1hv8_A 282 RLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YH----------LPQNPESYMHRIGRTGRAGKKGKAISIIN 343 (367)
T ss_dssp HHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SS----------CCSCHHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred HHHHcCCCeEEEECChhhcCCCcccCCEEEE--------ec----------CCCCHHHhhhcccccccCCCccEEEEEEc
Confidence 9999999999999999999999999999999 66 4889999999999999999 999999998
Q ss_pred hhhHhh
Q 010422 386 ENEFDK 391 (511)
Q Consensus 386 ~~~~~~ 391 (511)
++++..
T Consensus 344 ~~~~~~ 349 (367)
T 1hv8_A 344 RREYKK 349 (367)
T ss_dssp TTSHHH
T ss_pred HHHHHH
Confidence 877654
No 14
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=361.66 Aligned_cols=319 Identities=17% Similarity=0.189 Sum_probs=222.9
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
...++++++|.+++..+.+|++++++||||||||+++.++++.... .+.+++++.|+++++.|..+++.+..+
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~~----- 252 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFG----- 252 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHTS-----
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHHHHHHHHHhC-----
Confidence 4456789999999999999999999999999999888877776542 256799999999999999999988776
Q ss_pred eeeEEEeecc-------cCChhhhHHHHhh-Cc-CCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCC
Q 010422 90 RVGYSIRFDD-------RTSTSTRIKEALL-DP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNN 160 (511)
Q Consensus 90 ~vg~~~~~~~-------~~~~~~~i~~~l~-~~-~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 160 (511)
.+|+...... .+.+...+..++. .. .+.++++|||||+|..
T Consensus 253 ~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l------------------------------ 302 (1108)
T 3l9o_A 253 DVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM------------------------------ 302 (1108)
T ss_dssp SEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT------------------------------
T ss_pred CccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc------------------------------
Confidence 2443322111 1123334443333 22 3678999999999943
Q ss_pred CCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCC-----CCeEEeCCccccccEEEcCCCC
Q 010422 161 NNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTLYPE 234 (511)
Q Consensus 161 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 234 (511)
.+.+|+..+..++..++ .++++|+||||+ +...+++|++. ..++....+..|+..++.....
T Consensus 303 --------~d~~rg~~~e~ii~~l~----~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~ 370 (1108)
T 3l9o_A 303 --------RDKERGVVWEETIILLP----DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG 370 (1108)
T ss_dssp --------TSHHHHHHHHHHHHHSC----TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTS
T ss_pred --------cccchHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCC
Confidence 22222222223333332 678999999999 88888888742 2344555566665544322110
Q ss_pred C----------ch-----------------------------------------HHHHHHHHHHHhhcCCCCcEEEEcCC
Q 010422 235 P----------DY-----------------------------------------LDATLITIFQVHLDEAPGDILVFLTG 263 (511)
Q Consensus 235 ~----------~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~LVF~~s 263 (511)
. .+ ....+..++..+.....+++||||++
T Consensus 371 ~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~s 450 (1108)
T 3l9o_A 371 DGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFS 450 (1108)
T ss_dssp SCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred cceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCc
Confidence 0 00 02233344555555567899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCC------------------C------------CCeEEEEccCCCCHHHHHhhcCcCCCCC
Q 010422 264 QEEIESVERLVQERLLQLPEA------------------S------------RKLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (511)
Q Consensus 264 ~~~~~~l~~~l~~~~~~~~~~------------------~------------~~~~v~~lh~~l~~~~r~~i~~~f~~g~ 313 (511)
++.|+.++..|.+........ . ....+..+||+|++.+|..+++.|++|.
T Consensus 451 r~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ 530 (1108)
T 3l9o_A 451 KRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGF 530 (1108)
T ss_dssp HHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCC
Confidence 999999998885421110000 0 0112889999999999999999999999
Q ss_pred eEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChh
Q 010422 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (511)
Q Consensus 314 ~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 387 (511)
++|||||+++++|||+|++++||++. ..||.. ...|.|..+|+||+|||||.| .|.||.++++.
T Consensus 531 ikVLVAT~vla~GIDiP~v~~VI~~~----~~~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 531 LKVLFATETFSIGLNMPAKTVVFTSV----RKWDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCEEEEESCCCSCCCC--CEEEESCS----EEESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CeEEEECcHHhcCCCCCCceEEEecC----cccCcc------ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999999999999832 224422 125889999999999999999 89999999754
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.9e-38 Score=329.82 Aligned_cols=304 Identities=17% Similarity=0.165 Sum_probs=214.5
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeee
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg 92 (511)
-.++++|++++..+.+|+++++++|||||||..+.++++.. ...++++.|++.++.++.+.+.+. +.. ++
T Consensus 43 ~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----~g~~lVisP~~~L~~q~~~~l~~~-gi~----~~ 112 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----DGFTLVICPLISLMEDQLMVLKQL-GIS----AT 112 (591)
T ss_dssp CSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----SSEEEEECSCHHHHHHHHHHHHHH-TCC----EE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHhc-CCc----EE
Confidence 35789999999999999999999999999996554444432 347889999999999999887765 322 21
Q ss_pred EEEeec--------------------ccCChhhhH------HHHhh-CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHH
Q 010422 93 YSIRFD--------------------DRTSTSTRI------KEALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (511)
Q Consensus 93 ~~~~~~--------------------~~~~~~~~i------~~~l~-~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~ 145 (511)
+..... -...+..++ ...+. ...+.+++++||||||+...+...+.
T Consensus 113 ~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr------- 185 (591)
T 2v1x_A 113 MLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFR------- 185 (591)
T ss_dssp ECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCC-------
T ss_pred EEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccH-------
Confidence 111000 000111111 11111 12356789999999996543321110
Q ss_pred HhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH---HHHHhhhCCCCeEEeCCcc
Q 010422 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAKAVHVQGRQ 222 (511)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~---~~l~~~~~~~~~~~~~~~~ 222 (511)
+.+.. ...+... .++.++++||||++. +.+.++++......+....
T Consensus 186 -----------------~~~~~----------l~~l~~~----~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~ 234 (591)
T 2v1x_A 186 -----------------PDYKA----------LGILKRQ----FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF 234 (591)
T ss_dssp -----------------GGGGG----------GGHHHHH----CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC
T ss_pred -----------------HHHHH----------HHHHHHh----CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC
Confidence 00000 0011111 167899999999965 4566777655444443333
Q ss_pred ccccEEEcCCCCCchHHHHHHHHHHHhhc-CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHH
Q 010422 223 FPVEILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (511)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~ 301 (511)
....+.|............+..+...... .+++++||||+|+++++.++..|.+. ++.+..+||+|++++
T Consensus 235 ~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~ 305 (591)
T 2v1x_A 235 NRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GIHAGAYHANLEPED 305 (591)
T ss_dssp CCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHH
T ss_pred CCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHH
Confidence 33344443333333344445555555543 35788999999999999999999886 788999999999999
Q ss_pred HHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeE
Q 010422 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (511)
Q Consensus 302 r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~ 380 (511)
|.++++.|++|+.+|||||+++++|||+|+|++||+ || .|.|.++|+||+|||||.| +|.|
T Consensus 306 R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~----------~p~s~~~y~Qr~GRaGR~G~~g~~ 367 (591)
T 2v1x_A 306 KTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH--------HS----------MSKSMENYYQESGRAGRDDMKADC 367 (591)
T ss_dssp HHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE--------SS----------CCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred HHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE--------eC----------CCCCHHHHHHHhccCCcCCCCceE
Confidence 999999999999999999999999999999999999 66 5889999999999999999 9999
Q ss_pred EEecChhhHhh
Q 010422 381 FRLYPENEFDK 391 (511)
Q Consensus 381 ~~l~~~~~~~~ 391 (511)
+.+|+..+...
T Consensus 368 i~l~~~~D~~~ 378 (591)
T 2v1x_A 368 ILYYGFGDIFR 378 (591)
T ss_dssp EEEECHHHHHH
T ss_pred EEEEChHHHHH
Confidence 99999887654
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.5e-37 Score=310.98 Aligned_cols=307 Identities=16% Similarity=0.181 Sum_probs=217.4
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
..-.++++|.+++..+.+++++++.+|||||||..+..+++...... ++.+++++.|++.++.|..+.+.++.....+.
T Consensus 27 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 106 (391)
T 1xti_A 27 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 106 (391)
T ss_dssp SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTC
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCe
Confidence 33349999999999999999999999999999977766666554332 34578999999999999998887765432233
Q ss_pred eeeEEEeec---------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcccc
Q 010422 90 RVGYSIRFD---------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (511)
Q Consensus 90 ~vg~~~~~~---------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~ 152 (511)
.++...... -...+...+...+.. ..+.+++++|+||+|....+.... ..+..+....
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~-~~~~~~~~~~---- 181 (391)
T 1xti_A 107 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMR-RDVQEIFRMT---- 181 (391)
T ss_dssp CEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHH-HHHHHHHHTS----
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchH-HHHHHHHhhC----
Confidence 343322111 111122233333332 246789999999999764432221 1222222111
Q ss_pred CCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HH-HHhhhCCCCeEEeCCcc----ccc
Q 010422 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RG-FSEYFGCAKAVHVQGRQ----FPV 225 (511)
Q Consensus 153 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~-l~~~~~~~~~~~~~~~~----~~~ 225 (511)
..+.++++||||++. .. +..++.....+...... ..+
T Consensus 182 ------------------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (391)
T 1xti_A 182 ------------------------------------PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL 225 (391)
T ss_dssp ------------------------------------CSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTC
T ss_pred ------------------------------------CCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccc
Confidence 156799999999933 33 44566554444433221 122
Q ss_pred cEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhh
Q 010422 226 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV 305 (511)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 305 (511)
...+......+... .+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|..+
T Consensus 226 ~~~~~~~~~~~~~~----~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~ 292 (391)
T 1xti_A 226 QQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLSR 292 (391)
T ss_dssp EEEEEECCGGGHHH----HHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHH
T ss_pred eEEEEEcCchhHHH----HHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHH
Confidence 33333333333222 2233333346789999999999999999999886 7789999999999999999
Q ss_pred cCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEec
Q 010422 306 FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (511)
Q Consensus 306 ~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (511)
++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| .|.|+.++
T Consensus 293 ~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 354 (391)
T 1xti_A 293 YQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITFV 354 (391)
T ss_dssp HHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE--------SS----------CCSSHHHHHHHHCBCSSSCCCCEEEEEE
T ss_pred HHHHhcCCCcEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHhcccccCCCCceEEEEEE
Confidence 99999999999999999999999999999999 66 5889999999999999998 89999999
Q ss_pred ChhhH
Q 010422 385 PENEF 389 (511)
Q Consensus 385 ~~~~~ 389 (511)
++++.
T Consensus 355 ~~~~~ 359 (391)
T 1xti_A 355 SDEND 359 (391)
T ss_dssp CSHHH
T ss_pred cccch
Confidence 86643
No 17
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-38 Score=349.32 Aligned_cols=322 Identities=18% Similarity=0.231 Sum_probs=224.6
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
..+.++++|.+++..+.+|++++++||||||||+++..++..... .+.+++++.|+++++.|..+.+.+..+ .++..
T Consensus 83 ~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vgll 159 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFG-DVGLM 159 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--cCCeEEEECChHHHHHHHHHHHHHHhC-CEEEE
Confidence 356689999999999999999999999999999777666554432 256789999999999999999888776 22222
Q ss_pred eeEEEe---ecccCChhhhHHHHhh--CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCc
Q 010422 91 VGYSIR---FDDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 165 (511)
Q Consensus 91 vg~~~~---~~~~~~~~~~i~~~l~--~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~ 165 (511)
+|-... .+..+.+...+..++. ...+.+++++|+||+|.
T Consensus 160 tGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~------------------------------------ 203 (1010)
T 2xgj_A 160 TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY------------------------------------ 203 (1010)
T ss_dssp CSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG------------------------------------
T ss_pred eCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh------------------------------------
Confidence 221000 0011123334443332 34678899999999993
Q ss_pred hhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhC-----CCCeEEeCCccccccEEEcCCC------
Q 010422 166 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLYP------ 233 (511)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~------ 233 (511)
+.+..++..++.++..++ .++++|+||||+ |...+++|++ ...++..+.+..|+..++....
T Consensus 204 --l~d~~rg~~~e~il~~l~----~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~ 277 (1010)
T 2xgj_A 204 --MRDKERGVVWEETIILLP----DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYL 277 (1010)
T ss_dssp --GGCTTTHHHHHHHHHHSC----TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEE
T ss_pred --hcccchhHHHHHHHHhcC----CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceee
Confidence 344444444444444443 678999999999 8889999985 2334444555555554433211
Q ss_pred ----CCch----H-------------------------------------HHHHHHHHHHhhcCCCCcEEEEcCCHHHHH
Q 010422 234 ----EPDY----L-------------------------------------DATLITIFQVHLDEAPGDILVFLTGQEEIE 268 (511)
Q Consensus 234 ----~~~~----~-------------------------------------~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~ 268 (511)
...+ . ...+..++........+++||||+|++.|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e 357 (1010)
T 2xgj_A 278 VVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCE 357 (1010)
T ss_dssp EECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHH
T ss_pred eeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHH
Confidence 0000 0 111223333333444668999999999999
Q ss_pred HHHHHHHHH------------------HhcCCCCCC------------CeEEEEccCCCCHHHHHhhcCcCCCCCeEEEE
Q 010422 269 SVERLVQER------------------LLQLPEASR------------KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVIL 318 (511)
Q Consensus 269 ~l~~~l~~~------------------~~~~~~~~~------------~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 318 (511)
.+++.|.+. ...+..... ...+..|||+|++.+|..+++.|++|.++|||
T Consensus 358 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLV 437 (1010)
T 2xgj_A 358 ELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 437 (1010)
T ss_dssp HHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 999888541 000111100 12488899999999999999999999999999
Q ss_pred eccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChh
Q 010422 319 ATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (511)
Q Consensus 319 aT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 387 (511)
||+++++|||+|++++||+ ....||... ..|.|..+|+||+|||||.| .|.||.++++.
T Consensus 438 AT~~la~GIDiP~~~vVI~----~~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 438 ATETFSIGLNMPAKTVVFT----SVRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEGGGGGSTTCCBSEEEES----CSEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred EehHhhccCCCCCceEEEe----CCcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999999998 345577322 24899999999999999999 49999999754
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.6e-37 Score=312.02 Aligned_cols=305 Identities=14% Similarity=0.169 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
-.++++|++++..+.+++++++++|||||||+.+..+++...... .+.+++++.|++.++.|..+.+.+.... .+..+
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~ 120 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-CGISC 120 (400)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-TTCCE
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcc-cCceE
Confidence 348999999999999999999999999999987777776654432 3457889999999999999887766532 23333
Q ss_pred eEEEeecc--------------cCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCC
Q 010422 92 GYSIRFDD--------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (511)
Q Consensus 92 g~~~~~~~--------------~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~ 155 (511)
+....... ...+...+...+.. ..+.+++++|+||+|..... .+...+..+....
T Consensus 121 ~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~--~~~~~~~~i~~~~------- 191 (400)
T 1s2m_A 121 MVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR--DFKTIIEQILSFL------- 191 (400)
T ss_dssp EEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH--HHHHHHHHHHTTS-------
T ss_pred EEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh--chHHHHHHHHHhC-------
Confidence 32211110 01122333333333 34778999999999954321 1222233222111
Q ss_pred CCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhhhCCCCeEEeCCcc--ccccEEEc
Q 010422 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQ--FPVEILYT 230 (511)
Q Consensus 156 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~~~~~~~~~~~~~~--~~~~~~~~ 230 (511)
.+..++++||||++.. .+..++.....+...... ..+...+.
T Consensus 192 ---------------------------------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (400)
T 1s2m_A 192 ---------------------------------PPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYA 238 (400)
T ss_dssp ---------------------------------CSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEE
T ss_pred ---------------------------------CcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEE
Confidence 1567999999999543 234455443222222221 11222332
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCC
Q 010422 231 LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA 310 (511)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~ 310 (511)
........ ..+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|..+++.|+
T Consensus 239 ~~~~~~k~----~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~ 305 (400)
T 1s2m_A 239 FVEERQKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNKVFHEFR 305 (400)
T ss_dssp ECCGGGHH----HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred EechhhHH----HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHHHHHHHh
Confidence 22222222 22233333445789999999999999999999887 788999999999999999999999
Q ss_pred CCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhH
Q 010422 311 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 389 (511)
Q Consensus 311 ~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 389 (511)
+|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| .|.|+.++++++.
T Consensus 306 ~g~~~vLv~T~~~~~Gidip~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 306 QGKVRTLVCSDLLTRGIDIQAVNVVIN--------FD----------FPKTAETYLHRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp TTSSSEEEESSCSSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGH
T ss_pred cCCCcEEEEcCccccCCCccCCCEEEE--------eC----------CCCCHHHHHHhcchhcCCCCCceEEEEeccchH
Confidence 999999999999999999999999999 66 5889999999999999998 9999999998876
Q ss_pred hh
Q 010422 390 DK 391 (511)
Q Consensus 390 ~~ 391 (511)
..
T Consensus 368 ~~ 369 (400)
T 1s2m_A 368 FN 369 (400)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 19
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=327.26 Aligned_cols=317 Identities=13% Similarity=0.159 Sum_probs=108.2
Q ss_pred HHhhccCCCHHHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHHhhccccCC-CeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
+.....-.++++|.+++..+..+ ++++++||||||||..+.++++....... +.+++++.|++.++.|+.+.+.+..
T Consensus 107 l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp HHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHH
Confidence 33445557899999999999987 99999999999999887777776654432 3478999999999999988877665
Q ss_pred CCccCCeeeEEEeecc-----------cCChhhhHHHHhhC---cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 84 GVELGQRVGYSIRFDD-----------RTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~-----------~~~~~~~i~~~l~~---~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
....+..+++...... .+.+..++..++.. ..+.+++++|+||+|........ ...+..+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~-~~~~~~i~~--- 262 (479)
T 3fmp_B 187 KFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH-QDQSIRIQR--- 262 (479)
T ss_dssp TTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTH-HHHHHHHHT---
T ss_pred hhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCc-HHHHHHHHh---
Confidence 4333333443322111 11233444444432 23578999999999964321111 111111111
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH--HHH-hhhCCCCeEEeCCcccccc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQGRQFPVE 226 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~l~-~~~~~~~~~~~~~~~~~~~ 226 (511)
.+ ..+.++++||||++.+ .+. .++.+...+.+........
T Consensus 263 ---------------------------------~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 305 (479)
T 3fmp_B 263 ---------------------------------ML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD 305 (479)
T ss_dssp ---------------------------------TS----CTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------
T ss_pred ---------------------------------hC----CccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcC
Confidence 11 1568999999999554 333 4454444444433222111
Q ss_pred ---EEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 010422 227 ---ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (511)
Q Consensus 227 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 303 (511)
..+..... .......+..+......+++||||++++.++.++..|.+. +..+..+||++++.+|.
T Consensus 306 ~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~ 373 (479)
T 3fmp_B 306 TIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRA 373 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEeCC---HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHHHHH
Confidence 11111111 1122333444444445788999999999999999999876 78899999999999999
Q ss_pred hhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEE
Q 010422 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (511)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (511)
.+++.|++|..+|||||+++++|+|+|++++||+ ||...... .+.+..+|+||+|||||.| .|.|+.
T Consensus 374 ~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~--------~d~p~~~~----~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 374 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKD----GNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCCcEEEEccccccCCccccCCEEEE--------ecCCCCCc----cCCCHHHHHHHhcccccCCCCceEEE
Confidence 9999999999999999999999999999999999 66221111 1257789999999999999 899999
Q ss_pred ecChhh
Q 010422 383 LYPENE 388 (511)
Q Consensus 383 l~~~~~ 388 (511)
+++..+
T Consensus 442 ~~~~~~ 447 (479)
T 3fmp_B 442 MVDSKH 447 (479)
T ss_dssp ------
T ss_pred EEcCcc
Confidence 998654
No 20
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.3e-38 Score=329.04 Aligned_cols=301 Identities=19% Similarity=0.195 Sum_probs=214.4
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
+.++.+..+|++.+|+++...+.++++++++||||||||+++++++++. +.+++++.|+++++.|+++++.+..+
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----GYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----CCeEEEEcchHHHHHHHHHHHHHHhC
Confidence 4456677889999999999999999999999999999999999988874 44689999999999999999988887
Q ss_pred CccCCeeeEEEeecc---cCChhhhHHHHhhCc--CCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCC
Q 010422 85 VELGQRVGYSIRFDD---RTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~---~~~~~~~i~~~l~~~--~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 159 (511)
...+..+|+...... ...+..+ ++.++ .+.+++++|+||+|+++...+..+..+.+.....
T Consensus 283 ~~vg~~vG~~~~~~~~~IlV~TPGr---Ll~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~----------- 348 (666)
T 3o8b_A 283 IDPNIRTGVRTITTGAPVTYSTYGK---FLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETA----------- 348 (666)
T ss_dssp CCCEEECSSCEECCCCSEEEEEHHH---HHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTT-----------
T ss_pred CCeeEEECcEeccCCCCEEEECcHH---HHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhc-----------
Confidence 766555554321111 1122223 34443 3567999999999998877766555554433221
Q ss_pred CCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCchHH
Q 010422 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLD 239 (511)
Q Consensus 160 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (511)
....+++||||++.. +. ........+.-.. .....+.... ..
T Consensus 349 ------------------------------~~~llil~SAT~~~~-i~--~~~p~i~~v~~~~-~~~i~~~~~~--~~-- 390 (666)
T 3o8b_A 349 ------------------------------GARLVVLATATPPGS-VT--VPHPNIEEVALSN-TGEIPFYGKA--IP-- 390 (666)
T ss_dssp ------------------------------TCSEEEEEESSCTTC-CC--CCCTTEEEEECBS-CSSEEETTEE--EC--
T ss_pred ------------------------------CCceEEEECCCCCcc-cc--cCCcceEEEeecc-cchhHHHHhh--hh--
Confidence 233478889999542 10 0011111110000 0001111000 00
Q ss_pred HHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEe
Q 010422 240 ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILA 319 (511)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlva 319 (511)
.....++++||||+|+++++++++.|.+. ++.+..+||+|++++ |+++..+||||
T Consensus 391 ---------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e-------r~~~~~~VLVA 445 (666)
T 3o8b_A 391 ---------IEAIRGGRHLIFCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV-------IPTIGDVVVVA 445 (666)
T ss_dssp ---------GGGSSSSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG-------SCSSSCEEEEE
T ss_pred ---------hhhccCCcEEEEeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH-------HHhCCCcEEEE
Confidence 11224789999999999999999999875 788999999999875 34566799999
Q ss_pred ccccccCCCCCCeEEEEeCCccccee----ecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHh
Q 010422 320 TNIAETSVTIPGIKYVIDPGFVKARL----YDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (511)
Q Consensus 320 T~~~~~Gvdip~v~~VI~~g~~~~~~----yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (511)
||++++|||+| +++|||+|+.+..+ |||..++.. ...|.+.++|+||+|||||..+|. |.|+++++..
T Consensus 446 TdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 446 TDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp CTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred CChHHccCCCC-CcEEEecCccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 99999999997 99999999888665 456666644 357999999999999999944999 9999877553
No 21
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.1e-38 Score=353.80 Aligned_cols=318 Identities=17% Similarity=0.193 Sum_probs=222.9
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
..|+++++|.+++..+.+|++++++||||||||+++..++.... ..+.+++++.|++.++.|+.+++.+..+ +..
T Consensus 36 ~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~ 110 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--RNMTKTIYTSPIKALSNQKFRDFKETFD---DVN 110 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--HTTCEEEEEESCGGGHHHHHHHHHTTC-----CC
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCe
Confidence 34668999999999999999999999999999965444443322 1255788999999999999998877542 223
Q ss_pred eeEEEeecc-------cCChhhhHHHHhh--CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCC
Q 010422 91 VGYSIRFDD-------RTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNN 161 (511)
Q Consensus 91 vg~~~~~~~-------~~~~~~~i~~~l~--~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 161 (511)
++....... ...+...+...+. ...+.+++++|+||+|
T Consensus 111 v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH--------------------------------- 157 (997)
T 4a4z_A 111 IGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH--------------------------------- 157 (997)
T ss_dssp EEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT---------------------------------
T ss_pred EEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc---------------------------------
Confidence 333221111 1123334443332 2357789999999999
Q ss_pred CCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC-CHHHHHhhhCC-----CCeEEeCCccccccEEEcCC---
Q 010422 162 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTLY--- 232 (511)
Q Consensus 162 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~--- 232 (511)
.+.+.+++..++.++..++ +++++|+||||+ |...+++|++. ..++..+.+..|+..++...
T Consensus 158 -----~l~d~~~g~~~e~ii~~l~----~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~ 228 (997)
T 4a4z_A 158 -----YVNDQDRGVVWEEVIIMLP----QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKEL 228 (997)
T ss_dssp -----CCCTTCTTCCHHHHHHHSC----TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEE
T ss_pred -----cccccchHHHHHHHHHhcc----cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcc
Confidence 4556666666666666655 678999999999 99999999963 23455556666665443210
Q ss_pred -----CCCch----------------------------------------------------------------------
Q 010422 233 -----PEPDY---------------------------------------------------------------------- 237 (511)
Q Consensus 233 -----~~~~~---------------------------------------------------------------------- 237 (511)
....+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~ 308 (997)
T 4a4z_A 229 IPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGS 308 (997)
T ss_dssp EEEECTTCCBCHHHHHHHHHHHC---------------------------------------------------------
T ss_pred hhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000
Q ss_pred -----------HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHH------------------HhcCCCC----
Q 010422 238 -----------LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQER------------------LLQLPEA---- 284 (511)
Q Consensus 238 -----------~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~------------------~~~~~~~---- 284 (511)
....+..++........+++||||+|+++|+.++..|.+. ...+...
T Consensus 309 ~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 388 (997)
T 4a4z_A 309 NKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDL 388 (997)
T ss_dssp --------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTC
T ss_pred cccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcc
Confidence 0011334445555556789999999999999999888531 0000000
Q ss_pred --------CCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccce
Q 010422 285 --------SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 356 (511)
Q Consensus 285 --------~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~ 356 (511)
.....+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|+. + ...||+. .
T Consensus 389 ~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~-~---~~k~dg~------~ 458 (997)
T 4a4z_A 389 PQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFS-S---IRKHDGN------G 458 (997)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEES-C---SEEEETT------E
T ss_pred hhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEe-c---cccccCc------c
Confidence 00225788999999999999999999999999999999999999999777764 2 2335532 2
Q ss_pred eeecCHHHHHHhccccCCCC---CCeEEEecC
Q 010422 357 VVPISKAQALQRSGRAGREG---PGKCFRLYP 385 (511)
Q Consensus 357 ~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~ 385 (511)
..|.|..+|+||+|||||.| .|.||.++.
T Consensus 459 ~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 459 LRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp EEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred CCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 25899999999999999988 799999984
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-36 Score=320.32 Aligned_cols=319 Identities=13% Similarity=0.169 Sum_probs=213.4
Q ss_pred ccCCCHHHHHHHHHHHh--cCCEEEEEcCCCCchhchHHHHHhhccccC-----CCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 11 KSLPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~--~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-----~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
..-.++++|.+++..+. ++++++++||||||||..+.++++...... .+.+++++.|++.++.|+.+.+.+..
T Consensus 91 g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 91 EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp CCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 33458999999999998 678999999999999976666555443221 13478999999999999999887753
Q ss_pred CCcc---CCeeeEEEeec---------------ccCChhhhHHHHhh---CcCCCCCCchhHhhhhhhhhhh--HHHHHH
Q 010422 84 GVEL---GQRVGYSIRFD---------------DRTSTSTRIKEALL---DPYLSRYSAIIVDEAHERTVHT--DVLLGL 140 (511)
Q Consensus 84 ~~~~---~~~vg~~~~~~---------------~~~~~~~~i~~~l~---~~~l~~~~~iIiDE~H~r~~~~--~~ll~~ 140 (511)
.... ...+....... -.+.+..++..++. ...+.+++++|+||||+...+. ..+..+
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i 250 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETI 250 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred hhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHH
Confidence 2111 11111111100 11112223322222 1357789999999999643321 122222
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHHhhhCCC-CeEE
Q 010422 141 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEYFGCA-KAVH 217 (511)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~~~~~~~-~~~~ 217 (511)
+..+...+ ....+++|+++||||++. ..+..++... ..+.
T Consensus 251 ~~~l~~~~-------------------------------------~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~ 293 (563)
T 3i5x_A 251 SGILNEKN-------------------------------------SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLF 293 (563)
T ss_dssp HHHHHHHC-------------------------------------SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEE
T ss_pred HHhhhhcc-------------------------------------ccCccCceEEEEEccCCHHHHHHHHHhcCCCceEE
Confidence 22211111 011157899999999943 4555544333 2332
Q ss_pred eCCc--c-----ccccEEEcC-CCCCchHHHHHHHHHHHhh-cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCe
Q 010422 218 VQGR--Q-----FPVEILYTL-YPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 288 (511)
Q Consensus 218 ~~~~--~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 288 (511)
+... . ..+...+.. ..........+..+..... ...++++||||+|++.++.+++.|.+.... ++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~------~~ 367 (563)
T 3i5x_A 294 LDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK------DL 367 (563)
T ss_dssp EESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT------TS
T ss_pred EeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC------Cc
Confidence 2111 0 111111111 1122233333444433333 355789999999999999999999886532 67
Q ss_pred EEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHh
Q 010422 289 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQR 368 (511)
Q Consensus 289 ~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr 368 (511)
.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||
T Consensus 368 ~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~----------~p~s~~~y~Qr 429 (563)
T 3i5x_A 368 PILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IG----------VPSELANYIHR 429 (563)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ES----------CCSSTTHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------EC----------CCCchhhhhhh
Confidence 7999999999999999999999999999999999999999999999999 77 58899999999
Q ss_pred ccccCCCC-CCeEEEecChhhHh
Q 010422 369 SGRAGREG-PGKCFRLYPENEFD 390 (511)
Q Consensus 369 ~GRaGR~~-~G~~~~l~~~~~~~ 390 (511)
+|||||.| .|.|+.++++.+..
T Consensus 430 ~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 430 IGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp HTTSSCTTCCEEEEEEEEGGGHH
T ss_pred cCccccCCCCceEEEEEchhHHH
Confidence 99999999 89999999877654
No 23
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=7.8e-37 Score=319.02 Aligned_cols=292 Identities=16% Similarity=0.250 Sum_probs=207.5
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeE
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGY 93 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~ 93 (511)
.++++|.+++..+.+|+++++++|||||||..+..+++.. ...++++.|++.++.++.+.+... + ..+++
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~g~~lvi~P~~aL~~q~~~~l~~~-g----i~~~~ 94 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVVSPLISLMKDQVDQLQAN-G----VAAAC 94 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEECSCHHHHHHHHHHHHHT-T----CCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----CCCEEEECChHHHHHHHHHHHHHc-C----CcEEE
Confidence 5689999999999999999999999999996444444332 235788899999999988887642 2 22222
Q ss_pred EEeecccCChhhhH---H---------------HHhhC-----cCCCCCCchhHhhhhhhhhhhHHHHHHH---HHHHHh
Q 010422 94 SIRFDDRTSTSTRI---K---------------EALLD-----PYLSRYSAIIVDEAHERTVHTDVLLGLL---KKVQNA 147 (511)
Q Consensus 94 ~~~~~~~~~~~~~i---~---------------~~l~~-----~~l~~~~~iIiDE~H~r~~~~~~ll~~l---~~~~~~ 147 (511)
. .+........ . .+... ....+++++||||+|+...+...+...+ ..+...
T Consensus 95 l---~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 95 L---NSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp E---CTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred E---eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 1 1111111100 0 11111 1135788999999997654432211111 111111
Q ss_pred hccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhhhCC-CCeEEeCCccc
Q 010422 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGC-AKAVHVQGRQF 223 (511)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~~~~-~~~~~~~~~~~ 223 (511)
. ++.++++||||++.. ++.++++- .+.+...+...
T Consensus 172 ~-----------------------------------------~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r 210 (523)
T 1oyw_A 172 F-----------------------------------------PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR 210 (523)
T ss_dssp C-----------------------------------------TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCC
T ss_pred C-----------------------------------------CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCC
Confidence 1 678999999999554 45667753 33444443332
Q ss_pred cccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHH
Q 010422 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (511)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 303 (511)
+ ++.+......+.... +.......+++++||||+|+++++.+++.|.+. ++.+..+||+|++++|.
T Consensus 211 ~-~l~~~v~~~~~~~~~----l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~ 276 (523)
T 1oyw_A 211 P-NIRYMLMEKFKPLDQ----LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNVRA 276 (523)
T ss_dssp T-TEEEEEEECSSHHHH----HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred C-ceEEEEEeCCCHHHH----HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHH
Confidence 2 333333333333333 333333445779999999999999999999886 78899999999999999
Q ss_pred hhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEE
Q 010422 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (511)
Q Consensus 304 ~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 382 (511)
++++.|++|+.+|||||+++++|+|+|++++||+ || .|.|.++|+||+|||||.| +|.|+.
T Consensus 277 ~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~--------~~----------~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 277 DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FD----------IPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp HHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE--------SS----------CCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred HHHHHHHcCCCeEEEEechhhCCCCccCccEEEE--------EC----------CCCCHHHHHHHhccccCCCCCceEEE
Confidence 9999999999999999999999999999999999 66 5899999999999999999 999999
Q ss_pred ecChhhHhh
Q 010422 383 LYPENEFDK 391 (511)
Q Consensus 383 l~~~~~~~~ 391 (511)
+++.++...
T Consensus 339 ~~~~~d~~~ 347 (523)
T 1oyw_A 339 FYDPADMAW 347 (523)
T ss_dssp EECHHHHHH
T ss_pred EeCHHHHHH
Confidence 998887643
No 24
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.2e-37 Score=317.23 Aligned_cols=289 Identities=18% Similarity=0.179 Sum_probs=196.3
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEee
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF 97 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~ 97 (511)
.+......+.+|++++++||||||||+++.++++..... .+.+++++.|+++++.|+.+++. + ..+++....
T Consensus 10 ~~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~---g----~~v~~~~~~ 81 (459)
T 2z83_A 10 MGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR---G----LPVRYQTSA 81 (459)
T ss_dssp -----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT---T----SCEEECC--
T ss_pred HHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc---C----ceEeEEecc
Confidence 334445567889999999999999998876666654432 24568888999999999988764 2 222221110
Q ss_pred cc-------cC---ChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchh
Q 010422 98 DD-------RT---STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDM 167 (511)
Q Consensus 98 ~~-------~~---~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 167 (511)
.. .. ........++.+..+.+++++|+||+|+++...+..++++......
T Consensus 82 ~~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~-------------------- 141 (459)
T 2z83_A 82 VQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVEL-------------------- 141 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHT--------------------
T ss_pred cccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhcc--------------------
Confidence 00 00 0111223555567789999999999999877777777776654321
Q ss_pred hhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhC-CCCeEEeCCccccccEEEcCCCCCchHHHHHHHHH
Q 010422 168 ILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIF 246 (511)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (511)
++.++++||||++.+. ..+.. ..++..+. ...+...+.. ....+
T Consensus 142 ----------------------~~~~~il~SAT~~~~~-~~~~~~~~pi~~~~----------~~~~~~~~~~-~~~~l- 186 (459)
T 2z83_A 142 ----------------------GEAAAIFMTATPPGTT-DPFPDSNAPIHDLQ----------DEIPDRAWSS-GYEWI- 186 (459)
T ss_dssp ----------------------TSCEEEEECSSCTTCC-CSSCCCSSCEEEEE----------CCCCSSCCSS-CCHHH-
T ss_pred ----------------------CCccEEEEEcCCCcch-hhhccCCCCeEEec----------ccCCcchhHH-HHHHH-
Confidence 5789999999995432 12221 22322221 1111111100 00111
Q ss_pred HHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccC
Q 010422 247 QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS 326 (511)
Q Consensus 247 ~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~G 326 (511)
.. .++++||||+|+++++.+++.|.+. ++.+..+||. +|.++++.|++|+.+|||||+++++|
T Consensus 187 ---~~-~~~~~LVF~~s~~~~~~l~~~L~~~---------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~G 249 (459)
T 2z83_A 187 ---TE-YAGKTVWFVASVKMGNEIAMCLQRA---------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMG 249 (459)
T ss_dssp ---HH-CCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---
T ss_pred ---Hh-cCCCEEEEeCChHHHHHHHHHHHhc---------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhC
Confidence 11 2789999999999999999999886 7889999984 78899999999999999999999999
Q ss_pred CCCCCeEEEEeCCcccceeec--CCCCcccceeeecCHHHHHHhccccCCCC--CCeEEEecChh
Q 010422 327 VTIPGIKYVIDPGFVKARLYD--PVKGMESLLVVPISKAQALQRSGRAGREG--PGKCFRLYPEN 387 (511)
Q Consensus 327 vdip~v~~VI~~g~~~~~~yd--~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~~~~ 387 (511)
+|+|+ ++|||+|+.+.+.|+ ....+..+...|.|.++|+||+|||||.| +|.||.+++..
T Consensus 250 iDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 250 ANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred eecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999 999999988777654 22222222338999999999999999998 89999999775
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.1e-36 Score=318.26 Aligned_cols=317 Identities=14% Similarity=0.182 Sum_probs=213.0
Q ss_pred cCCCHHHHHHHHHHHh--cCCEEEEEcCCCCchhchHHHHHhhccccC-----CCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 12 SLPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~--~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-----~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.-.++++|.+++..+. ++++++++||||||||..+.++++...... .+.+++++.|++.++.|+.+.+.+...
T Consensus 41 ~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp CSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 3348999999999998 788999999999999976655555433221 244788999999999999998877542
Q ss_pred C----ccCCeeeEEEee---------------cccCChhhhHHHHhh---CcCCCCCCchhHhhhhhhhhhh--HHHHHH
Q 010422 85 V----ELGQRVGYSIRF---------------DDRTSTSTRIKEALL---DPYLSRYSAIIVDEAHERTVHT--DVLLGL 140 (511)
Q Consensus 85 ~----~~~~~vg~~~~~---------------~~~~~~~~~i~~~l~---~~~l~~~~~iIiDE~H~r~~~~--~~ll~~ 140 (511)
. ....... .... +-.+.+..++...+. ...+..++++|+||||+...+. ..+..+
T Consensus 121 ~~~~~~~~~~~~-~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i 199 (579)
T 3sqw_A 121 MNYGLKKYACVS-LVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETI 199 (579)
T ss_dssp HCGGGTTSCEEE-ECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred hcccccceEEEE-EECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHH
Confidence 1 1111111 1110 011122223322222 2357789999999999754322 222222
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHHhhh-CCCCeEE
Q 010422 141 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEYF-GCAKAVH 217 (511)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~~~~-~~~~~~~ 217 (511)
+..+...+ .....++++++||||++. ..+..++ .....+.
T Consensus 200 ~~~l~~~~-------------------------------------~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~ 242 (579)
T 3sqw_A 200 SGILNEKN-------------------------------------SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLF 242 (579)
T ss_dssp HHHHHHHC-------------------------------------SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEE
T ss_pred HHHhhhhh-------------------------------------cccccCceEEEEeccCChHHHHHHHHHcCCCceEE
Confidence 22221111 011147899999999943 4454444 3333333
Q ss_pred eCCc--c-----ccccEEEcCC-CCCchHHHHHHHHHHHhhc-CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCe
Q 010422 218 VQGR--Q-----FPVEILYTLY-PEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 288 (511)
Q Consensus 218 ~~~~--~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 288 (511)
+... . ..+...+... .........+..+...... .+++++||||+|++.++.+++.|.+.... ++
T Consensus 243 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~------~~ 316 (579)
T 3sqw_A 243 LDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK------DL 316 (579)
T ss_dssp EESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT------TS
T ss_pred EeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC------CC
Confidence 2211 0 1111111111 1122333334444433332 55788999999999999999999886532 67
Q ss_pred EEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHh
Q 010422 289 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQR 368 (511)
Q Consensus 289 ~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr 368 (511)
.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||
T Consensus 317 ~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~----------~p~s~~~y~Qr 378 (579)
T 3sqw_A 317 PILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IG----------VPSELANYIHR 378 (579)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ES----------CCSSTTHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cC----------CCCCHHHhhhh
Confidence 7999999999999999999999999999999999999999999999999 77 58899999999
Q ss_pred ccccCCCC-CCeEEEecChhhHh
Q 010422 369 SGRAGREG-PGKCFRLYPENEFD 390 (511)
Q Consensus 369 ~GRaGR~~-~G~~~~l~~~~~~~ 390 (511)
+|||||.| .|.|+.++++.+..
T Consensus 379 ~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 379 IGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp HTTSSCTTCCEEEEEEEEGGGHH
T ss_pred ccccccCCCCceEEEEEcccHHH
Confidence 99999999 89999999877654
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.3e-37 Score=315.14 Aligned_cols=311 Identities=15% Similarity=0.254 Sum_probs=104.4
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHhCCcc
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~ 87 (511)
......++++|++++..+.+++++++++|||||||..+..+++...... .+.+++++.|++.++.|..+.+.+.... .
T Consensus 38 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~ 116 (394)
T 1fuu_A 38 GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH-M 116 (394)
T ss_dssp HHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-S
T ss_pred HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhcc-C
Confidence 3444578999999999999999999999999999977666666554332 3557899999999999999887766532 2
Q ss_pred CCeeeEEEeecc-------------cCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcccc
Q 010422 88 GQRVGYSIRFDD-------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (511)
Q Consensus 88 ~~~vg~~~~~~~-------------~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~ 152 (511)
+..++....... ...+...+...+.. ..+.+++++|+||+|...... +...+..+...
T Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~--~~~~~~~~~~~----- 189 (394)
T 1fuu_A 117 DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQIFTL----- 189 (394)
T ss_dssp CCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHH-----
T ss_pred CeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC--cHHHHHHHHHh-----
Confidence 233332211111 11122222233322 236789999999999642221 11111111111
Q ss_pred CCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhhhCCCCeEEeCCcccc---cc
Q 010422 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFP---VE 226 (511)
Q Consensus 153 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~~~~~~~~~~~~~~~~---~~ 226 (511)
+ .++.++++||||++.. ....++.....+........ +.
T Consensus 190 -------------------------------~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T 1fuu_A 190 -------------------------------L----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIK 234 (394)
T ss_dssp -------------------------------S----CTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------
T ss_pred -------------------------------C----CCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCce
Confidence 1 1567999999999543 34456655444444332221 11
Q ss_pred EEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhc
Q 010422 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 306 (511)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 306 (511)
..+......++. ...+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|..++
T Consensus 235 ~~~~~~~~~~~~---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~ 302 (394)
T 1fuu_A 235 QFYVNVEEEEYK---YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIM 302 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCchhhH---HHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHHHHHH
Confidence 122221222211 222233333345678999999999999999999875 77899999999999999999
Q ss_pred CcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecC
Q 010422 307 APAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (511)
Q Consensus 307 ~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (511)
+.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| +|.|+.+++
T Consensus 303 ~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 364 (394)
T 1fuu_A 303 KEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAINFVT 364 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHCCCCcEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHcCcccCCCCCceEEEEEc
Confidence 9999999999999999999999999999999 66 5888999999999999998 899999999
Q ss_pred hhhHhhc
Q 010422 386 ENEFDKL 392 (511)
Q Consensus 386 ~~~~~~~ 392 (511)
+++...+
T Consensus 365 ~~~~~~~ 371 (394)
T 1fuu_A 365 NEDVGAM 371 (394)
T ss_dssp -------
T ss_pred hhHHHHH
Confidence 8876543
No 27
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.8e-37 Score=316.17 Aligned_cols=287 Identities=16% Similarity=0.199 Sum_probs=200.6
Q ss_pred HHHHHHHHHHhcCC-EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEE
Q 010422 17 SVEKRLVEEVRKND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI 95 (511)
Q Consensus 17 ~~q~~~~~~l~~~~-~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~ 95 (511)
++|+ +++.+.+++ +++++||||||||+.+...++..... .+.+++++.|+++++.|+.+.+. +..+++..
T Consensus 7 ~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~ 77 (451)
T 2jlq_A 7 PDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR-------GLPIRYQT 77 (451)
T ss_dssp CCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEECC
T ss_pred CcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc-------Cceeeeee
Confidence 3444 566666555 55999999999998655554433322 24568888999999999988753 22333322
Q ss_pred eeccc---------CChhh-hHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCc
Q 010422 96 RFDDR---------TSTST-RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 165 (511)
Q Consensus 96 ~~~~~---------~~~~~-~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~ 165 (511)
..... ..+.. ....+.....+.+++++|+||+|+.+...+..+.++..... .
T Consensus 78 ~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~----------------- 139 (451)
T 2jlq_A 78 PAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-M----------------- 139 (451)
T ss_dssp TTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHH-T-----------------
T ss_pred ccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhc-C-----------------
Confidence 21100 00111 12245566778999999999999886666665555533211 1
Q ss_pred hhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCchHHHHHHHH
Q 010422 166 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITI 245 (511)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (511)
++.++++||||++.+....+.++.+.+... +..|... +. .. .
T Consensus 140 ------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~-~~-----~~----~--- 181 (451)
T 2jlq_A 140 ------------------------GEAAAIFMTATPPGSTDPFPQSNSPIEDIE-REIPERS-WN-----TG----F--- 181 (451)
T ss_dssp ------------------------TSCEEEEECSSCTTCCCSSCCCSSCEEEEE-CCCCSSC-CS-----SS----C---
T ss_pred ------------------------CCceEEEEccCCCccchhhhcCCCceEecC-ccCCchh-hH-----HH----H---
Confidence 578999999999665544444444444432 2222111 10 00 0
Q ss_pred HHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecccccc
Q 010422 246 FQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAET 325 (511)
Q Consensus 246 ~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~ 325 (511)
..... ..+++||||+|+++++.+++.|.+. ++.+..+||++ +.++++.|++|+.+|||||+++++
T Consensus 182 -~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~---------g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~ 246 (451)
T 2jlq_A 182 -DWITD-YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEM 246 (451)
T ss_dssp -HHHHH-CCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGS
T ss_pred -HHHHh-CCCCEEEEcCCHHHHHHHHHHHHHc---------CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHh
Confidence 11111 2679999999999999999999875 77888999975 357899999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeecCCCCccccee---eecCHHHHHHhccccCCCC--CCeEEEecC
Q 010422 326 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLV---VPISKAQALQRSGRAGREG--PGKCFRLYP 385 (511)
Q Consensus 326 Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~---~p~s~~~~~Qr~GRaGR~~--~G~~~~l~~ 385 (511)
|+|+|+ ++|||+|+.+...|| ..+...+.. .|.|.++|+||+|||||.| +|.||.++.
T Consensus 247 GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 247 GANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp SCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 999999 999999999888888 445555554 8999999999999999999 789988875
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-35 Score=294.26 Aligned_cols=296 Identities=17% Similarity=0.235 Sum_probs=207.9
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
+.++......++++|++++..+.+++++++++|||||||..+..+++.. +.+++++.|++.++.|..+.+.+...
T Consensus 7 ~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~~~ 81 (337)
T 2z0m_A 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDIGR 81 (337)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 3444455557899999999999999999999999999998777777664 44688899999999999998876543
Q ss_pred CccCCeeeEEEeec-------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 85 VELGQRVGYSIRFD-------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 85 ~~~~~~vg~~~~~~-------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
..+..++...... -...+...+...+.. ..+.+++++|+||+|....+. +...++.+....
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~~~~~~- 157 (337)
T 2z0m_A 82 -YMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG--FIDDIKIILAQT- 157 (337)
T ss_dssp -TSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT--CHHHHHHHHHHC-
T ss_pred -hcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc--cHHHHHHHHhhC-
Confidence 2223333221110 011122233333332 236788999999999643321 111112111111
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH---HHHhhhCCCCeEEeCCcccccc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFPVE 226 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~l~~~~~~~~~~~~~~~~~~~~ 226 (511)
....++++||||++.. .+..|+.+...+........+.
T Consensus 158 ---------------------------------------~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (337)
T 2z0m_A 158 ---------------------------------------SNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVE 198 (337)
T ss_dssp ---------------------------------------TTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEE
T ss_pred ---------------------------------------CcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCce
Confidence 1456888999999544 4556776654444332223333
Q ss_pred EEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhc
Q 010422 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 306 (511)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 306 (511)
..+...... .. .. ........++++||||+++++++.+++.|. .+..+||+++.++|.+++
T Consensus 199 ~~~~~~~~~-~~-~~----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~ 259 (337)
T 2z0m_A 199 HKFVHVKDD-WR-SK----VQALRENKDKGVIVFVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNI 259 (337)
T ss_dssp EEEEECSSS-SH-HH----HHHHHTCCCSSEEEECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHH
T ss_pred EEEEEeChH-HH-HH----HHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHH
Confidence 333332222 11 11 123344568899999999999999887764 367889999999999999
Q ss_pred CcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecC
Q 010422 307 APAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (511)
Q Consensus 307 ~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (511)
+.|++|+.+|||||+++++|+|+|++++||+ || .|.|..+|+||+||+||.| .|.|+.++.
T Consensus 260 ~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~----------~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 260 DAFREGEYDMLITTDVASRGLDIPLVEKVIN--------FD----------APQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp HHHHTTSCSEEEECHHHHTTCCCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred HHHHcCCCcEEEEcCccccCCCccCCCEEEE--------ec----------CCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 9999999999999999999999999999999 66 5889999999999999998 899999997
No 29
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.9e-36 Score=320.26 Aligned_cols=292 Identities=17% Similarity=0.195 Sum_probs=205.4
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
+..+|++.. .+..+.+|++++++||||||||+.+...++..... .+.+++++.|+++++.|+.+.+. +.
T Consensus 170 ~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~-------~~ 238 (618)
T 2whx_A 170 RIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR-------GL 238 (618)
T ss_dssp CCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred ccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc-------CC
Confidence 344555433 47888999999999999999998765555544332 34568888899999999887653 22
Q ss_pred eeeEEEeecccCCh---------hh-hHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCC
Q 010422 90 RVGYSIRFDDRTST---------ST-RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (511)
Q Consensus 90 ~vg~~~~~~~~~~~---------~~-~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 159 (511)
.++|.........+ .. ....++.++.+.+++++|+||||+.+...+..+..+..... +
T Consensus 239 ~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~----------- 306 (618)
T 2whx_A 239 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-M----------- 306 (618)
T ss_dssp CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-H-----------
T ss_pred ceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-c-----------
Confidence 34433221000111 11 11245566778999999999999986666666666655442 2
Q ss_pred CCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhC-CCCeEEeCCccccccEEEcCCCCCchH
Q 010422 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYL 238 (511)
Q Consensus 160 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (511)
++.|+++||||++.. ...+.. +.+.+.+... +| ...+
T Consensus 307 ------------------------------~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-~~---------~~~~- 344 (618)
T 2whx_A 307 ------------------------------GEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-IP---------ERSW- 344 (618)
T ss_dssp ------------------------------TSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-CC---------SSCC-
T ss_pred ------------------------------cCccEEEEECCCchh-hhhhhccCCceeeeccc-CC---------HHHH-
Confidence 567999999999443 223333 2223332221 11 1111
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEE
Q 010422 239 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVIL 318 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 318 (511)
...+.. ... ..+++||||+|+++++.+++.|.+. ++.+..+||+ +|.++++.|++|+.+|||
T Consensus 345 ~~ll~~----l~~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~~~VLV 406 (618)
T 2whx_A 345 NTGFDW----ITD-YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTDWDFVV 406 (618)
T ss_dssp SSSCHH----HHH-CCSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSCCSEEE
T ss_pred HHHHHH----HHh-CCCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCCcEEEE
Confidence 011111 111 2779999999999999999999886 7789999984 788899999999999999
Q ss_pred eccccccCCCCCCeEEEEeCCcccceee--cCCCCcccceeeecCHHHHHHhccccCCCC--CCeEEEecC
Q 010422 319 ATNIAETSVTIPGIKYVIDPGFVKARLY--DPVKGMESLLVVPISKAQALQRSGRAGREG--PGKCFRLYP 385 (511)
Q Consensus 319 aT~~~~~Gvdip~v~~VI~~g~~~~~~y--d~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~~ 385 (511)
||+++++|+|+| +++|||+|+...+.+ |...++......|.+.++|+||+|||||.| .|.||.+++
T Consensus 407 aTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 407 TTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp ECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 999999999997 999999998776554 333334445558999999999999999996 899999997
No 30
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.6e-36 Score=306.11 Aligned_cols=281 Identities=18% Similarity=0.154 Sum_probs=186.8
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 104 (511)
.+.+|++++++||||||||..+..+++..... ++.+++++.|+++++.|+.+.+... .+++.........+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHhcC-------CeEEecccceeccCC
Confidence 46789999999999999998766655553332 2446888889999999998876421 233322111011111
Q ss_pred ---------hhH-HHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCC
Q 010422 105 ---------TRI-KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGND 174 (511)
Q Consensus 105 ---------~~i-~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 174 (511)
..+ ..++....+.+++++|+||+|+.+...+..++.+.+... +
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~-------------------------- 128 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-A-------------------------- 128 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-T--------------------------
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-c--------------------------
Confidence 111 134444568899999999999986666666666655432 1
Q ss_pred CCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCchHHHHHHHHHHHhhcCCC
Q 010422 175 TNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAP 254 (511)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (511)
.+.++++||||++... .++.... .++.......+.... ...+..+. . .+
T Consensus 129 ---------------~~~~~l~~SAT~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~l~----~-~~ 177 (440)
T 1yks_A 129 ---------------NESATILMTATPPGTS-DEFPHSN---------GEIEDVQTDIPSEPW-NTGHDWIL----A-DK 177 (440)
T ss_dssp ---------------TSCEEEEECSSCTTCC-CSSCCCS---------SCEEEEECCCCSSCC-SSSCHHHH----H-CC
T ss_pred ---------------CCceEEEEeCCCCchh-hhhhhcC---------CCeeEeeeccChHHH-HHHHHHHH----h-cC
Confidence 5689999999994431 1222111 111111111111110 01111111 1 26
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEE
Q 010422 255 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKY 334 (511)
Q Consensus 255 ~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~ 334 (511)
+++||||+++++++.+++.|.+. ++.+..+|| ++|.++++.|++|+.+|||||+++++|+|+| +++
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~ 243 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VER 243 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceE
Confidence 89999999999999999999885 778999999 5788999999999999999999999999999 999
Q ss_pred EEeCCcccceee-cCCCCcccceeeecCHHHHHHhccccCCC-C-CCeEEEecC
Q 010422 335 VIDPGFVKARLY-DPVKGMESLLVVPISKAQALQRSGRAGRE-G-PGKCFRLYP 385 (511)
Q Consensus 335 VI~~g~~~~~~y-d~~~~~~~~~~~p~s~~~~~Qr~GRaGR~-~-~G~~~~l~~ 385 (511)
|||+|+...+.| +...++......|.+.++|+||+|||||. + +|.||.++.
T Consensus 244 VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 244 VLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 999999887766 33333444455799999999999999997 4 899999973
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-36 Score=317.74 Aligned_cols=309 Identities=15% Similarity=0.197 Sum_probs=192.0
Q ss_pred CCHHHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHHhhccccCC-CeEEEEeCccHHHHHHHHHHHHHHhCCcc-CC
Q 010422 14 PIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGVEL-GQ 89 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~~-~~ 89 (511)
.++++|++++..+.++ ++++++||||||||.++.++++....... +.+++++.|++.++.|..+++.+...... ..
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~ 220 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT 220 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCE
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeE
Confidence 4788999999999988 99999999999999877777776654432 45789999999999999998877654221 11
Q ss_pred eeeEEEee--------cccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCC
Q 010422 90 RVGYSIRF--------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (511)
Q Consensus 90 ~vg~~~~~--------~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 159 (511)
..++.... +-...+...+...+.. ..+.++++||+||+|....... +...+..+....
T Consensus 221 ~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~-~~~~~~~i~~~~----------- 288 (508)
T 3fho_A 221 AFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQG-LGDQSMRIKHLL----------- 288 (508)
T ss_dssp EC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC---CHHHHHHHHHHS-----------
T ss_pred EEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCC-cHHHHHHHHHhC-----------
Confidence 11111110 1112233344433332 2467899999999997543221 111111111111
Q ss_pred CCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCC--HHHHHhhh-CCCCeEEeCCcccc---ccEEEcCCC
Q 010422 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEYF-GCAKAVHVQGRQFP---VEILYTLYP 233 (511)
Q Consensus 160 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~--~~~l~~~~-~~~~~~~~~~~~~~---~~~~~~~~~ 233 (511)
..+.++++||||++ .+.+..++ +....+.+...... +...+....
T Consensus 289 -----------------------------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 339 (508)
T 3fho_A 289 -----------------------------PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQ 339 (508)
T ss_dssp -----------------------------CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC-
T ss_pred -----------------------------CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECC
Confidence 15689999999994 45555544 33333333322221 112222221
Q ss_pred CCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCC
Q 010422 234 EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (511)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~ 313 (511)
.. ......+..+.....++++||||+++++++.+++.|.+. +..+..+||+++..+|..+++.|++|+
T Consensus 340 ~~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g~ 407 (508)
T 3fho_A 340 SE---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFRVGT 407 (508)
T ss_dssp -C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHHSSS
T ss_pred ch---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 11 223334445555556789999999999999999998764 778899999999999999999999999
Q ss_pred eEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 314 ~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
.+|||||+++++|+|+|++++||+ ||...... ...+..+|+||+|||||.| .|.|+.++...
T Consensus 408 ~~VLVaT~~l~~GiDip~v~~VI~--------~~~p~~~~----~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 408 SKVLVTTNVIARGIDVSQVNLVVN--------YDMPLDQA----GRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp CCCCEECC-----CCCTTCCEEEC------------CC---------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred CeEEEeCChhhcCCCccCCCEEEE--------ECCCCccc----CCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 999999999999999999999998 65211110 1267899999999999999 89999999753
No 32
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.7e-36 Score=318.08 Aligned_cols=310 Identities=19% Similarity=0.174 Sum_probs=209.7
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 106 (511)
.++++++++||||||||+.+...+.... ..+++.|+++++.|+.+++.+. +..++..+|.... ...+..+
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~~------~gl~l~PtR~LA~Qi~~~l~~~-g~~v~lltG~~~~---iv~TpGr 222 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSAK------SGVYCGPLKLLAHEIFEKSNAA-GVPCDLVTGEERV---TVQPNGK 222 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHSS------SEEEEESSHHHHHHHHHHHHHT-TCCEEEECSSCEE---CCSTTCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC------CeEEEeCHHHHHHHHHHHHHhc-CCcEEEEECCeeE---EecCCCc
Confidence 4788999999999999986666655531 2367799999999999987653 4333322221111 0111110
Q ss_pred HHHHh-----hCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCCcccc
Q 010422 107 IKEAL-----LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTL 181 (511)
Q Consensus 107 i~~~l-----~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~ 181 (511)
...++ .......++++|+||+|+. ++.+++..+...+
T Consensus 223 ~~~il~~T~e~~~l~~~v~lvVIDEaH~l--------------------------------------~d~~~g~~~~~~l 264 (677)
T 3rc3_A 223 QASHVSCTVEMCSVTTPYEVAVIDEIQMI--------------------------------------RDPARGWAWTRAL 264 (677)
T ss_dssp CCSEEEEEGGGCCSSSCEEEEEECSGGGG--------------------------------------GCTTTHHHHHHHH
T ss_pred ccceeEecHhHhhhcccCCEEEEecceec--------------------------------------CCccchHHHHHHH
Confidence 00000 1124567899999999954 3333333333333
Q ss_pred ccccccCCCCccEEEeccCC-CHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEE
Q 010422 182 KQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVF 260 (511)
Q Consensus 182 ~~~~~~~~~~~~~i~~SAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF 260 (511)
..+.. .+.+++++|||. ..+.+..+.+....+....+..+ ..+...... ..... .+..+||
T Consensus 265 ~~l~~---~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~--l~~~~~~l~------------~l~~~-~~g~iIf 326 (677)
T 3rc3_A 265 LGLCA---EEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTP--ISVLDHALE------------SLDNL-RPGDCIV 326 (677)
T ss_dssp HHCCE---EEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSC--EEECSSCCC------------SGGGC-CTTEEEE
T ss_pred HccCc---cceEEEeccchHHHHHHHHHhcCCceEEEEeeecch--HHHHHHHHH------------HHHhc-CCCCEEE
Confidence 33321 467999999997 45555555544322222222222 222111110 01111 3445888
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCC--CCeEEEEeccccccCCCCCCeEEEEeC
Q 010422 261 LTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA--GFRKVILATNIAETSVTIPGIKYVIDP 338 (511)
Q Consensus 261 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~--g~~~vlvaT~~~~~Gvdip~v~~VI~~ 338 (511)
|+|+++++.+++.|.+. ++.+..+||+|++++|.++++.|++ |.++|||||+++++|+|+ ++++||++
T Consensus 327 ~~s~~~ie~la~~L~~~---------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~ 396 (677)
T 3rc3_A 327 CFSKNDIYSVSRQIEIR---------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFY 396 (677)
T ss_dssp CSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEES
T ss_pred EcCHHHHHHHHHHHHhc---------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEEC
Confidence 99999999999999875 7889999999999999999999998 899999999999999999 89999999
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhccccCCCC----CCeEEEecChh--hHhhccCCCCCcccccCccHHHHHH
Q 010422 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG----PGKCFRLYPEN--EFDKLEDSTKPEIKRCNLSNVILQL 412 (511)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~----~G~~~~l~~~~--~~~~~~~~~~pei~~~~l~~~~L~~ 412 (511)
|..+. .||+..+.. ..|.|.++|+||+|||||.| .|.||.+++++ .+..+.....+++.+.++....+++
T Consensus 397 ~~~k~-~~~~~G~~~---~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l 472 (677)
T 3rc3_A 397 SLIKP-SINEKGERE---LEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQI 472 (677)
T ss_dssp CSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHH
T ss_pred Ccccc-ccccCCccc---cccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHH
Confidence 98877 677664332 35999999999999999999 48999999887 6667888888999998888888888
Q ss_pred HHcC
Q 010422 413 KALG 416 (511)
Q Consensus 413 ~~~~ 416 (511)
+.++
T Consensus 473 ~~~~ 476 (677)
T 3rc3_A 473 EMFA 476 (677)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2e-35 Score=301.29 Aligned_cols=309 Identities=15% Similarity=0.146 Sum_probs=199.1
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
+..+....+.++++|.+++..+.+|++++++||||||||..+..+++... ..+.+++++.|++.++.|+.+++.++..
T Consensus 12 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 12 SFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLAD 89 (414)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHcc
Confidence 34444557789999999999999999999999999999974444433322 2355788999999999999999887643
Q ss_pred CccCCeeeEEEeecc------------------cCChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHH
Q 010422 85 VELGQRVGYSIRFDD------------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (511)
Q Consensus 85 ~~~~~~vg~~~~~~~------------------~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~ 146 (511)
.+..++....... .+.+..++...+....+.+++++|+||+|....+...+
T Consensus 90 --~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~--------- 158 (414)
T 3oiy_A 90 --EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNI--------- 158 (414)
T ss_dssp --SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHH---------
T ss_pred --CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchh---------
Confidence 3334433221111 01112222222222345689999999999654332100
Q ss_pred hhccccCCCCCCCCCCCCchhhhc-cCCCCC-Ccccccccc-----c--cCCCCccEEEeccCCCHH----H-HHhhhCC
Q 010422 147 ARSKSADGHSNGNNNNENSDMILD-RGNDTN-GINTLKQCQ-----G--RKFAPLKLIIMSASLDAR----G-FSEYFGC 212 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~-~~~~~~~~~-----~--~~~~~~~~i~~SAT~~~~----~-l~~~~~~ 212 (511)
|.+++ .++... +..++..++ . ....+.++++||||+.++ . +..+++-
T Consensus 159 -------------------d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 219 (414)
T 3oiy_A 159 -------------------DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF 219 (414)
T ss_dssp -------------------HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSC
T ss_pred -------------------hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhcc
Confidence 11222 222221 111111111 0 011567999999995222 2 2233331
Q ss_pred CCeEEeCCccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE-
Q 010422 213 AKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV- 291 (511)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~- 291 (511)
. ..........+...+.... ..+.....+.. .++++||||++++.++.+++.|.+. ++.+.
T Consensus 220 ~-~~~~~~~~~~i~~~~~~~~---~~~~l~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~ 281 (414)
T 3oiy_A 220 T-VGRLVSVARNITHVRISSR---SKEKLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGE 281 (414)
T ss_dssp C-SSCCCCCCCSEEEEEESSC---CHHHHHHHHHH-----HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEE
T ss_pred C-cCccccccccchheeeccC---HHHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHc---------CCceeh
Confidence 1 1011111122333333332 22222222212 2588999999999999999999885 77787
Q ss_pred EccCCCCHHHHHhhcCcCCCCCeEEEEe----ccccccCCCCCC-eEEEEeCCcccceeecCCCCcccceeee--cCHHH
Q 010422 292 PIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKARLYDPVKGMESLLVVP--ISKAQ 364 (511)
Q Consensus 292 ~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gvdip~-v~~VI~~g~~~~~~yd~~~~~~~~~~~p--~s~~~ 364 (511)
.+||. +|+ ++.|++|+.+|||| |+++++|+|+|+ +++||+ || .| .+..+
T Consensus 282 ~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~----------~p~~~~~~~ 337 (414)
T 3oiy_A 282 TWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WG----------TPSGPDVYT 337 (414)
T ss_dssp SSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ES----------CCTTTCHHH
T ss_pred hhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--------EC----------CCCCCCHHH
Confidence 88984 344 99999999999999 999999999999 999999 77 57 89999
Q ss_pred HHHhccccCCCC-----CCeEEEecChh
Q 010422 365 ALQRSGRAGREG-----PGKCFRLYPEN 387 (511)
Q Consensus 365 ~~Qr~GRaGR~~-----~G~~~~l~~~~ 387 (511)
|+||+|||||.| .|.|+.++.+.
T Consensus 338 y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 338 YIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp HHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred HHHHhCccccCCCCCCcceEEEEEEccH
Confidence 999999999987 68999999433
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.2e-36 Score=325.22 Aligned_cols=138 Identities=16% Similarity=0.255 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEc--------cCCCCHHHHHhhcCcCCC-CCeEEEEeccc
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI--------FSSLPSEQQMRVFAPAAA-GFRKVILATNI 322 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~i~~~f~~-g~~~vlvaT~~ 322 (511)
.+++++||||++++.++.+++.|.+.. ....+.+..+ ||+|++++|.++++.|++ |..+|||||++
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v 470 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 470 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHCT-----TCCSCCEEC-----------------------------CCSCSEEEES
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech
Confidence 357889999999999999999998741 0012556666 679999999999999998 99999999999
Q ss_pred cccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhH----------hhc
Q 010422 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF----------DKL 392 (511)
Q Consensus 323 ~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~----------~~~ 392 (511)
+++|+|+|++++||+ || .|.+..+|+||+|| ||..+|.|+.++++.+. +.+
T Consensus 471 ~~~GiDip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~ 531 (696)
T 2ykg_A 471 ADEGIDIAQCNLVIL--------YE----------YVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKM 531 (696)
T ss_dssp SCCC---CCCSEEEE--------ES----------CC--CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred hhcCCcCccCCEEEE--------eC----------CCCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 999999999999999 88 47778889999999 99999999999988776 334
Q ss_pred cCCCCCcccccCccHHHHHHH
Q 010422 393 EDSTKPEIKRCNLSNVILQLK 413 (511)
Q Consensus 393 ~~~~~pei~~~~l~~~~L~~~ 413 (511)
.....|++...+...+..+++
T Consensus 532 ~~~~~~~~~~~~~~~~~~~i~ 552 (696)
T 2ykg_A 532 MNDSILRLQTWDEAVFREKIL 552 (696)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhhccCHHHHHHHHH
Confidence 444455555555555555444
No 35
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1e-34 Score=296.25 Aligned_cols=275 Identities=16% Similarity=0.186 Sum_probs=190.2
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCC-----
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS----- 102 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~----- 102 (511)
+|++++++||||||||..+..++++.... .+.+++++.|++.++.|..+.+. + ..+++.........
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-~g~~~lvl~Pt~~La~Q~~~~~~---~----~~v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-KRLRTVILAPTRVVASEMYEALR---G----EPIRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT---T----SCEEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEECcHHHHHHHHHHHhC---C----CeEEEEecCccccCCCCce
Confidence 47899999999999998765555533322 24578888999999999887653 2 22333222100000
Q ss_pred ----hhhhH-HHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCchhhhccCCCCCC
Q 010422 103 ----TSTRI-KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNG 177 (511)
Q Consensus 103 ----~~~~i-~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 177 (511)
....+ ..++.+..+.+++++|+||+|..+...+..+..++.... +
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~-~----------------------------- 122 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS-M----------------------------- 122 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-T-----------------------------
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhh-C-----------------------------
Confidence 11111 244556678999999999999987666666676666542 1
Q ss_pred ccccccccccCCCCccEEEeccCCCHHHHHhhhC-CCCeEEeCCccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCc
Q 010422 178 INTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGD 256 (511)
Q Consensus 178 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (511)
.++++++||||+... +.++.. ..+...+... .+...+ .. ++..... .+++
T Consensus 123 ------------~~~~~l~~SAT~~~~-~~~~~~~~~~i~~~~~~----------~~~~~~-~~----~~~~l~~-~~~~ 173 (431)
T 2v6i_A 123 ------------GDAGAIFMTATPPGT-TEAFPPSNSPIIDEETR----------IPDKAW-NS----GYEWITE-FDGR 173 (431)
T ss_dssp ------------TSCEEEEEESSCTTC-CCSSCCCSSCCEEEECC----------CCSSCC-SS----CCHHHHS-CSSC
T ss_pred ------------CCCcEEEEeCCCCcc-hhhhcCCCCceeecccc----------CCHHHH-HH----HHHHHHc-CCCC
Confidence 578999999999542 122221 1222222111 111111 00 1111122 3678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEE
Q 010422 257 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 336 (511)
Q Consensus 257 ~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI 336 (511)
+||||+++++++.+++.|.+. ++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+||
T Consensus 174 ~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI 239 (431)
T 2v6i_A 174 TVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVI 239 (431)
T ss_dssp EEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEE
Confidence 999999999999999999875 6789999997 678899999999999999999999999999 99999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEec
Q 010422 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (511)
Q Consensus 337 ~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~ 384 (511)
++|....+.|| ..++......|.+.++|+||+||+||.| .+.|+.++
T Consensus 240 ~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 240 DPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp ECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 99999988888 4555556668999999999999999998 34344444
No 36
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.4e-35 Score=312.53 Aligned_cols=290 Identities=17% Similarity=0.197 Sum_probs=198.5
Q ss_pred CHHHHH-----HHHHHHh------cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 15 IASVEK-----RLVEEVR------KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 15 ~~~~q~-----~~~~~l~------~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
++++|+ +.+..+. ++++++++||||||||+.+...++..... .+.+++++.|+++++.|+.+.+...
T Consensus 216 pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~~- 293 (673)
T 2wv9_A 216 VSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRGL- 293 (673)
T ss_dssp EEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred cCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhcC-
Confidence 444555 6666665 89999999999999998766655544332 2456888889999999998876422
Q ss_pred CCccCCeeeEEEeecccCC----------hhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccC
Q 010422 84 GVELGQRVGYSIRFDDRTS----------TSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~----------~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~ 153 (511)
. +++......... .......++.+..+.+++++|+||+|+.+...+..+..++.....
T Consensus 294 --~----i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~------ 361 (673)
T 2wv9_A 294 --P----VRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA------ 361 (673)
T ss_dssp --C----CEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT------
T ss_pred --C----eeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc------
Confidence 1 122111000010 111122445556789999999999999877666667766655421
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhC-CCCeEEeCCccccccEEEcCC
Q 010422 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLY 232 (511)
Q Consensus 154 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (511)
.+.++++||||++.. +.++.. ..+...+.. ..
T Consensus 362 ------------------------------------~~~~vl~~SAT~~~~-i~~~~~~~~~i~~v~~----------~~ 394 (673)
T 2wv9_A 362 ------------------------------------GEAAAIFMTATPPGT-SDPFPDTNSPVHDVSS----------EI 394 (673)
T ss_dssp ------------------------------------TSCEEEEECSSCTTC-CCSSCCCSSCEEEEEC----------CC
T ss_pred ------------------------------------cCCcEEEEcCCCChh-hhhhcccCCceEEEee----------ec
Confidence 467999999999533 112221 122222111 11
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC
Q 010422 233 PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG 312 (511)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g 312 (511)
+.... ...+. ... ..++++||||+++++++.+++.|.+. ++.+..+|| ++|.++++.|++|
T Consensus 395 ~~~~~-~~~l~----~l~-~~~~~~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg----~eR~~v~~~F~~g 455 (673)
T 2wv9_A 395 PDRAW-SSGFE----WIT-DYAGKTVWFVASVKMSNEIAQCLQRA---------GKRVIQLNR----KSYDTEYPKCKNG 455 (673)
T ss_dssp CSSCC-SSCCH----HHH-SCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECS----SSHHHHGGGGGTC
T ss_pred CHHHH-HHHHH----HHH-hCCCCEEEEECCHHHHHHHHHHHHhC---------CCeEEEeCh----HHHHHHHHHHHCC
Confidence 11110 01111 111 24789999999999999999999875 778999999 3899999999999
Q ss_pred CeEEEEeccccccCCCCCCeEEEEeCCcccce--eecCCCCcccceeeecCHHHHHHhccccCCC-C-CCeEEEecC
Q 010422 313 FRKVILATNIAETSVTIPGIKYVIDPGFVKAR--LYDPVKGMESLLVVPISKAQALQRSGRAGRE-G-PGKCFRLYP 385 (511)
Q Consensus 313 ~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~--~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~-~-~G~~~~l~~ 385 (511)
+.+|||||+++++|+|+| +++|||+|....+ .||...++..+...|.+.++|+||+|||||. + .|.||.++.
T Consensus 456 ~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 456 DWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred CceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 999999999999999999 9999999876543 3555444444445899999999999999999 4 899999973
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.5e-34 Score=304.46 Aligned_cols=120 Identities=16% Similarity=0.241 Sum_probs=59.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHh--cCC-CCCCCeEEEEccCCCCHHHHHhhcCcCCC-CCeEEEEeccccccCC
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLL--QLP-EASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~--~~~-~~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gv 327 (511)
.+++++||||++++.++.+++.|.+... ... ....+.....+||+|++++|.++++.|++ |..+|||||+++++|+
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 5578999999999999999999865310 000 01114455667899999999999999999 9999999999999999
Q ss_pred CCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHh
Q 010422 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (511)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (511)
|+|++++||+ || .|.+...|+||+|| ||..+|.||.++++.+.+
T Consensus 468 Dip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 468 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CEEEE--------ET----------CCSCHHHHHHC---------CCEEEEESCHHHH
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 9999999999 88 58999999999999 999999999999887654
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.4e-33 Score=290.35 Aligned_cols=112 Identities=23% Similarity=0.382 Sum_probs=101.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccC--------CCCHHHHHhhcCcCCCCCeEEEEecccc
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS--------SLPSEQQMRVFAPAAAGFRKVILATNIA 323 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~--------~l~~~~r~~i~~~f~~g~~~vlvaT~~~ 323 (511)
.+++++||||++++.++.+++.|.+. ++.+..+|| +++.++|.++++.|++|..+|||||+++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~ 429 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 429 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcc
Confidence 46889999999999999999999886 778999999 9999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHh
Q 010422 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (511)
Q Consensus 324 ~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (511)
++|+|+|++++||+ || .|.++..|.||+||+||.|+|.+|.++++...+
T Consensus 430 ~~Gldl~~~~~Vi~--------~d----------~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 430 EEGLDVPEVDLVVF--------YE----------PVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp GGGGGSTTCCEEEE--------SS----------CCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred ccCCCchhCCEEEE--------eC----------CCCCHHHHHHHHhhccCCCCceEEEEEecCCHH
Confidence 99999999999998 77 578899999999999999999999999876544
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.6e-33 Score=295.37 Aligned_cols=120 Identities=19% Similarity=0.300 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhc---CCCCCCCeEEEEccCCCCHHHHHhhcCcCCC-CCeEEEEeccccccCC
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQ---LPEASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~---~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gv 327 (511)
.+++++||||++++.++.+++.|.+.... ......+.....+||+|++++|.++++.|++ |..+|||||+++++|+
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 45689999999999999999999874110 0001113345566789999999999999999 9999999999999999
Q ss_pred CCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHh
Q 010422 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (511)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (511)
|+|++++||+ || .|.++.+|+||+|| ||...|.||.++++.+.+
T Consensus 467 Dlp~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 467 DIAECNLVIL--------YE----------YVGNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp ETTSCSEEEE--------ES----------CCSSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred ccccCCEEEE--------eC----------CCCCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 9999999999 88 57788889999999 999999999999877654
No 40
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.8e-33 Score=303.96 Aligned_cols=120 Identities=16% Similarity=0.241 Sum_probs=64.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHh--cCC-CCCCCeEEEEccCCCCHHHHHhhcCcCCC-CCeEEEEeccccccCC
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLL--QLP-EASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~--~~~-~~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gv 327 (511)
.+++++||||++++.++.+++.|.+... .+. ....+.....+||+|++.+|..+++.|++ |..+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 5578999999999999999999976210 000 00124456677999999999999999999 9999999999999999
Q ss_pred CCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhHh
Q 010422 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (511)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 390 (511)
|+|++++||+ || .|.++..|+||+|| ||..+|.||.++++.+.+
T Consensus 709 Dlp~v~~VI~--------yd----------~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCCSEEEE--------ES----------CCSCHHHHHTC--------CCCEEEEECCHHHH
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 9999999999 88 58899999999999 999999999999876553
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.98 E-value=1e-31 Score=302.24 Aligned_cols=298 Identities=18% Similarity=0.188 Sum_probs=206.3
Q ss_pred hccCCCHHHHHHHHHHHhc----CC--EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 10 RKSLPIASVEKRLVEEVRK----ND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~----~~--~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
...+.++++|.+++..+.+ ++ +++++||||||||.++..+++.... .+.+++++.|++.++.|..+++.+..
T Consensus 599 ~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 599 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHHHh
Confidence 3455679999999998876 65 9999999999999776555544322 25588999999999999999988766
Q ss_pred CCccCCeeeEEEeecccCChhhhHH---------------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 84 GVELGQRVGYSIRFDDRTSTSTRIK---------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~i~---------------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
. ..+..++...++.........+. .+..+..+.+++++|+||+|........ .++. .+
T Consensus 677 ~-~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~~---~l~~---l~ 749 (1151)
T 2eyq_A 677 A-NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE---RIKA---MR 749 (1151)
T ss_dssp T-TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHHH---HHHH---HH
T ss_pred h-cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHHH---HHHH---hc
Confidence 4 22334443322111100000111 1122345788999999999975433221 1111 11
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEe-CC---cccc
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHV-QG---RQFP 224 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~-~~---~~~~ 224 (511)
.+.++++||||+.++.+...+.......+ .. ...+
T Consensus 750 -----------------------------------------~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~ 788 (1151)
T 2eyq_A 750 -----------------------------------------ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 788 (1151)
T ss_dssp -----------------------------------------TTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBC
T ss_pred -----------------------------------------CCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccc
Confidence 56799999999976666655443322221 11 1123
Q ss_pred ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 010422 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (511)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 304 (511)
+..++..... ......+.... ..+++++|||+++++++.+++.|.+.+. +..+..+||+|++.+|++
T Consensus 789 i~~~~~~~~~----~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p-------~~~v~~lhg~~~~~eR~~ 855 (1151)
T 2eyq_A 789 VKTFVREYDS----MVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVP-------EARIAIGHGQMRERELER 855 (1151)
T ss_dssp EEEEEEECCH----HHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCT-------TSCEEECCSSCCHHHHHH
T ss_pred cEEEEecCCH----HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCC-------CCeEEEEeCCCCHHHHHH
Confidence 3333322211 22222233222 2478999999999999999999988642 567999999999999999
Q ss_pred hcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEe
Q 010422 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (511)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (511)
+++.|++|+.+|||||+++++|+|+|++++||. +++ .+.+.++|.||+||+||.| .|.||.+
T Consensus 856 il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~~~---------~~~~l~~l~Qr~GRvgR~g~~g~~~ll 918 (1151)
T 2eyq_A 856 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERA---------DHFGLAQLHQLRGRVGRSHHQAYAWLL 918 (1151)
T ss_dssp HHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTT---------TSSCHHHHHHHHTTCCBTTBCEEEEEE
T ss_pred HHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------eCC---------CCCCHHHHHHHHhccCcCCCceEEEEE
Confidence 999999999999999999999999999999996 442 1356778999999999999 9999999
Q ss_pred cChh
Q 010422 384 YPEN 387 (511)
Q Consensus 384 ~~~~ 387 (511)
++++
T Consensus 919 ~~~~ 922 (1151)
T 2eyq_A 919 TPHP 922 (1151)
T ss_dssp ECCG
T ss_pred ECCc
Confidence 9764
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.7e-32 Score=295.22 Aligned_cols=295 Identities=20% Similarity=0.260 Sum_probs=195.8
Q ss_pred hccCCCHHHHHHHHHHHhcC------CEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 10 RKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~------~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
...+.++++|++++..+.++ .+++++||||||||..+..+++..... +.+++++.|++.++.|..+.+.+..
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 34567899999999998765 589999999999998777777654322 4578899999999999999988776
Q ss_pred CCccCCeeeEEEeecccCChhhh--H-H---------------HHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHH
Q 010422 84 GVELGQRVGYSIRFDDRTSTSTR--I-K---------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~~~~~~~~~--i-~---------------~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~ 145 (511)
.. .+..++...+ ......+ + . .+.....+.+++++|+||+|+.....
T Consensus 442 ~~-~gi~v~~l~G---~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~q----------- 506 (780)
T 1gm5_A 442 SK-FNIHVALLIG---ATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQ----------- 506 (780)
T ss_dssp TC-SSCCEEECCS---SSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC---------------
T ss_pred hh-cCceEEEEeC---CCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHH-----------
Confidence 42 2333433221 1111111 1 1 12223457899999999999421100
Q ss_pred HhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHH-hhhCCCCeEEeCC---c
Q 010422 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKAVHVQG---R 221 (511)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~-~~~~~~~~~~~~~---~ 221 (511)
+ ..+... ..++++++||||+.++.++ .+++......+.. .
T Consensus 507 --r------------------------------~~l~~~----~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~ 550 (780)
T 1gm5_A 507 --R------------------------------EALMNK----GKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 550 (780)
T ss_dssp ---------------------------------CCCCSS----SSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS
T ss_pred --H------------------------------HHHHHh----CCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC
Confidence 0 001000 1467899999999777665 3445433333322 1
Q ss_pred cccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH--------HHHHHHHHHHHhcCCCCCCCeEEEEc
Q 010422 222 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI--------ESVERLVQERLLQLPEASRKLVTVPI 293 (511)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~--------~~l~~~l~~~~~~~~~~~~~~~v~~l 293 (511)
..++...+.. .+........+.... ..+++++||||+.++. +.+++.|.+. ..+++.+..+
T Consensus 551 r~~i~~~~~~---~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~~~~~~v~~l 619 (780)
T 1gm5_A 551 RKEVQTMLVP---MDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------VFPEFKLGLM 619 (780)
T ss_dssp CCCCEECCCC---SSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGS------CC---CBCCC
T ss_pred CcceEEEEec---cchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEE
Confidence 2233332222 222333333333322 3478899999977554 4444433320 1236778999
Q ss_pred cCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccC
Q 010422 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (511)
Q Consensus 294 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaG 373 (511)
||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||+ ||+. ..+.+.+.||+||+|
T Consensus 620 HG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~---------r~~l~~l~Qr~GRaG 682 (780)
T 1gm5_A 620 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPE---------RFGLAQLHQLRGRVG 682 (780)
T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCS---------SSCTTHHHHHHHTSC
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCC---------CCCHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999998 6632 135678999999999
Q ss_pred CCC-CCeEEEecC
Q 010422 374 REG-PGKCFRLYP 385 (511)
Q Consensus 374 R~~-~G~~~~l~~ 385 (511)
|.| +|.||.+++
T Consensus 683 R~g~~g~~ill~~ 695 (780)
T 1gm5_A 683 RGGQEAYCFLVVG 695 (780)
T ss_dssp CSSTTCEEECCCC
T ss_pred cCCCCCEEEEEEC
Confidence 998 999999997
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=1.3e-31 Score=297.33 Aligned_cols=119 Identities=16% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHh--cCC-CCCCCeEEEEccCCCCHHHHHhhcCcCCC-CCeEEEEeccccccCC
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLL--QLP-EASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~--~~~-~~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gv 327 (511)
.+++++||||++++.++.+++.|.+... .+. ....+.....+||+|++.+|.++++.|++ |..+|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 4578999999999999999999987410 000 00114455667999999999999999999 9999999999999999
Q ss_pred CCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChhhH
Q 010422 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 389 (511)
Q Consensus 328 dip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 389 (511)
|+|++++||+ || .|.+..+|+||+|| ||..+|.||.++++.+.
T Consensus 709 Dlp~v~~VI~--------yD----------~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp -CCCCSEEEE--------ES----------CCSCSHHHHCC--------CCCEEEEESCHHH
T ss_pred cchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 9999999999 88 58889999999999 99999999999977544
No 44
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=2.1e-32 Score=297.50 Aligned_cols=110 Identities=16% Similarity=0.265 Sum_probs=88.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCC--------CCHHHHHhhcCcCCCCCeEEEEecccccc
Q 010422 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMRVFAPAAAGFRKVILATNIAET 325 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~i~~~f~~g~~~vlvaT~~~~~ 325 (511)
++++||||++++.++.+++.|.+.. .+ ...++.+..+||+ |++++|.++++.|++|..+|||||+++++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~-~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENE-KF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSC-SC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCc-cc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 7899999999999999999997630 00 1125788899999 99999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecC
Q 010422 326 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 385 (511)
Q Consensus 326 Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~ 385 (511)
|||+|++++||+ || .|.+..+|+||+|||||.| +.++.+++
T Consensus 477 GIDip~v~~VI~--------~d----------~p~s~~~~~Qr~GRArr~g-~~~~l~~~ 517 (699)
T 4gl2_A 477 GLDIKECNIVIR--------YG----------LVTNEIAMVQARGRARADE-STYVLVAH 517 (699)
T ss_dssp TSCCCSCCCCEE--------ES----------CCCCHHHHHHHHTTSCSSS-CEEEEEEE
T ss_pred CCccccCCEEEE--------eC----------CCCCHHHHHHHcCCCCCCC-ceEEEEEe
Confidence 999999999999 88 5889999999999987766 44444443
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=6e-32 Score=302.34 Aligned_cols=277 Identities=15% Similarity=0.131 Sum_probs=174.6
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
...+.++++|.++++.+.+|++++++||||||||+.+..+++... ..+.+++++.|+++++.|+.+++.++. ..+.
T Consensus 74 ~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~--~~~i 149 (1104)
T 4ddu_A 74 KFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLA--DEKV 149 (1104)
T ss_dssp HSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTS--CTTS
T ss_pred hcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhh--CCCC
Confidence 345689999999999999999999999999999975444443332 235678899999999999999987733 3334
Q ss_pred eeeEEEeeccc------------------CChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccc
Q 010422 90 RVGYSIRFDDR------------------TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (511)
Q Consensus 90 ~vg~~~~~~~~------------------~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~ 151 (511)
.++...+.... +.+..++...+....+.+++++|+||+|+.....
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~----------------- 212 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKAS----------------- 212 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSS-----------------
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccccc-----------------
Confidence 45443321111 1112222222222336789999999999643322
Q ss_pred cCCCCCCCCCCCCchhhhc-cCCCCC-Ccccccccc-----c--cCCCCccEEEeccCCCHH-----HHHhhhCCCCeEE
Q 010422 152 ADGHSNGNNNNENSDMILD-RGNDTN-GINTLKQCQ-----G--RKFAPLKLIIMSASLDAR-----GFSEYFGCAKAVH 217 (511)
Q Consensus 152 ~~~~~~~~~~g~~~~~~l~-~~~~~~-~~~~~~~~~-----~--~~~~~~~~i~~SAT~~~~-----~l~~~~~~~~~~~ 217 (511)
...|.|++ .++... +..++..++ . ....+.++++||||+.++ .+..++. ..+..
T Consensus 213 -----------r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~ 280 (1104)
T 4ddu_A 213 -----------RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGR 280 (1104)
T ss_dssp -----------HHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCCB
T ss_pred -----------ccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEecc
Confidence 00122233 222222 222222211 0 011567999999996332 2333332 11111
Q ss_pred eCCccccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE-EccCC
Q 010422 218 VQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV-PIFSS 296 (511)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~-~lh~~ 296 (511)
.......+...+.... ........+.. .++++||||++++.++.++..|.+. ++.+. .+||
T Consensus 281 ~~~~~~~i~~~~~~~~---k~~~L~~ll~~-----~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg- 342 (1104)
T 4ddu_A 281 LVSVARNITHVRISSR---SKEKLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSE- 342 (1104)
T ss_dssp CCCCCCCEEEEEESCC---CHHHHHHHHHH-----HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSS-
T ss_pred CCCCcCCceeEEEecC---HHHHHHHHHHh-----cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecC-
Confidence 1111122333333332 22222222212 2589999999999999999999885 77887 8998
Q ss_pred CCHHHHHhhcCcCCCCCeEEEEe----ccccccCCCCCC-eEEEEeCCccc
Q 010422 297 LPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVK 342 (511)
Q Consensus 297 l~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gvdip~-v~~VI~~g~~~ 342 (511)
+|++ ++.|++|+.+|||| |+++++|+|+|+ |++||++++.+
T Consensus 343 ----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 343 ----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp ----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred ----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 2555 99999999999999 999999999999 99999966554
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=1.1e-30 Score=270.88 Aligned_cols=286 Identities=15% Similarity=0.143 Sum_probs=185.8
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
.+.++++|.+++..+.+++++++++|||||||.++..++... +..++++.|++.++.|..+++.+ ++.. .+
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~---~v 161 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FGEE---YV 161 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-GCGG---GE
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-CCCc---ce
Confidence 457899999999999999999999999999997776666554 34688889999999999988777 4432 03
Q ss_pred eEEEeecc-----cCChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCCCCCch
Q 010422 92 GYSIRFDD-----RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSD 166 (511)
Q Consensus 92 g~~~~~~~-----~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 166 (511)
+....... .+.+...+..... ....+++++|+||+|...... . +.
T Consensus 162 ~~~~g~~~~~~~Ivv~T~~~l~~~~~-~~~~~~~liIvDEaH~~~~~~--~----~~----------------------- 211 (472)
T 2fwr_A 162 GEFSGRIKELKPLTVSTYDSAYVNAE-KLGNRFMLLIFDEVHHLPAES--Y----VQ----------------------- 211 (472)
T ss_dssp EEBSSSCBCCCSEEEEEHHHHHHTHH-HHTTTCSEEEEETGGGTTSTT--T----HH-----------------------
T ss_pred EEECCCcCCcCCEEEEEcHHHHHHHH-HhcCCCCEEEEECCcCCCChH--H----HH-----------------------
Confidence 32111110 1111122221111 122468999999999532111 0 00
Q ss_pred hhhccCCCCCCccccccccccCCCCccEEEeccCCC-HH----HHHhhhCCCCeEEeC-----Cc-ccccc---EEE---
Q 010422 167 MILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD-AR----GFSEYFGCAKAVHVQ-----GR-QFPVE---ILY--- 229 (511)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~-~~----~l~~~~~~~~~~~~~-----~~-~~~~~---~~~--- 229 (511)
++..+ ...++++||||+. .+ .+..+++.. ..... .. ..+.. +..
T Consensus 212 -------------~~~~~-----~~~~~l~lSATp~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~ 272 (472)
T 2fwr_A 212 -------------IAQMS-----IAPFRLGLTATFEREDGRHEILKEVVGGK-VFELFPDSLAGKHLAKYTIKRIFVPLA 272 (472)
T ss_dssp -------------HHHTC-----CCSEEEEEESCCCCTTSGGGSHHHHTCCE-EEECCHHHHTSCCCCSEEECCEEECCC
T ss_pred -------------HHHhc-----CCCeEEEEecCccCCCCHHHHHHHHhCCe-EeecCHHHHhcCcCCCeEEEEEEcCCC
Confidence 11111 4568899999993 11 233333311 00000 00 00000 000
Q ss_pred -------------------------------cC-------CCC-C-ch------------HHHHHHHHHHHhhcCCCCcE
Q 010422 230 -------------------------------TL-------YPE-P-DY------------LDATLITIFQVHLDEAPGDI 257 (511)
Q Consensus 230 -------------------------------~~-------~~~-~-~~------------~~~~~~~~~~~~~~~~~~~~ 257 (511)
.. .+. . .. .......+..+.....++++
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~ 352 (472)
T 2fwr_A 273 EDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKI 352 (472)
T ss_dssp HHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCB
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcE
Confidence 00 000 0 00 00122333444444568899
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEe
Q 010422 258 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVID 337 (511)
Q Consensus 258 LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~ 337 (511)
||||++++.++.+++.|. +..+||+++..+|.++++.|++|..+|||||+++++|+|+|++++||+
T Consensus 353 lvF~~~~~~~~~l~~~l~--------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~ 418 (472)
T 2fwr_A 353 IIFTRHNELVYRISKVFL--------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI 418 (472)
T ss_dssp CCBCSCHHHHHHHHHHTT--------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE
T ss_pred EEEECCHHHHHHHHHHhC--------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE
Confidence 999999999999887762 446899999999999999999999999999999999999999999998
Q ss_pred CCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCCC----eEEEecChh
Q 010422 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPG----KCFRLYPEN 387 (511)
Q Consensus 338 ~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G----~~~~l~~~~ 387 (511)
|| .|.+...|.||+||+||.|+| .+|.++++.
T Consensus 419 --------~~----------~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 419 --------MS----------GSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp --------EC----------CSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred --------EC----------CCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 77 477889999999999999976 455666544
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=1.5e-29 Score=283.16 Aligned_cols=270 Identities=14% Similarity=0.123 Sum_probs=162.5
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
...+++ ++|.++++.+.+|++++++||||||||+ +.++++..... .+.+++++.|++.++.|+.+.+.+.... .+.
T Consensus 53 ~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~~l~~~-~~i 128 (1054)
T 1gku_B 53 CVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIRKYAEK-AGV 128 (1054)
T ss_dssp TTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHHHHHTT-TCC
T ss_pred hcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHHHHHhh-cCC
Confidence 345667 9999999999999999999999999995 44444443322 3457888999999999999988776542 222
Q ss_pred ----eeeEEEeecc----------------cCChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhc
Q 010422 90 ----RVGYSIRFDD----------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (511)
Q Consensus 90 ----~vg~~~~~~~----------------~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~ 149 (511)
.++...+... .+.+..++...+.. +.+++++|+||+|+...+...+..+++.+.
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~--L~~l~~lViDEah~~l~~~~~~~~i~~~lg---- 202 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE--LGHFDFIFVDDVDAILKASKNVDKLLHLLG---- 202 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT--SCCCSEEEESCHHHHHTSTHHHHHHHHHTT----
T ss_pred CccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH--hccCCEEEEeChhhhhhccccHHHHHHHhC----
Confidence 3332211111 11122223333322 678999999999974443333322222110
Q ss_pred cccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH-HHHH-hhhCCCCeEEeCCcc---cc
Q 010422 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA-RGFS-EYFGCAKAVHVQGRQ---FP 224 (511)
Q Consensus 150 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~l~-~~~~~~~~~~~~~~~---~~ 224 (511)
+...... ..+ ..+.+++++|||+.. ..+. .+++....+.+.... ..
T Consensus 203 -----------------------f~~~~~~--~~~----~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~ 253 (1054)
T 1gku_B 203 -----------------------FHYDLKT--KSW----VGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRN 253 (1054)
T ss_dssp -----------------------EEEETTT--TEE----EECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCC
T ss_pred -----------------------cchhhhh--hhc----ccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCC
Confidence 0000000 001 145789999999933 3222 222111111111111 12
Q ss_pred ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 010422 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (511)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 304 (511)
+...+........+. .+.... ++++||||+|+++++.+++.|.+ .+.+..+||++ .+
T Consensus 254 i~~~~~~~~k~~~L~-------~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~----------~~~v~~lhg~~-----~~ 310 (1054)
T 1gku_B 254 VEDVAVNDESISTLS-------SILEKL-GTGGIIYARTGEEAEEIYESLKN----------KFRIGIVTATK-----KG 310 (1054)
T ss_dssp EEEEEESCCCTTTTH-------HHHTTS-CSCEEEEESSHHHHHHHHHTTTT----------SSCEEECTTSS-----SH
T ss_pred ceEEEechhHHHHHH-------HHHhhc-CCCEEEEEcCHHHHHHHHHHHhh----------ccCeeEEeccH-----HH
Confidence 333333222222222 222222 67899999999999999988754 26789999998 36
Q ss_pred hcCcCCCCCeEEEEe----ccccccCCCCCCe-EEEEeCCcc
Q 010422 305 VFAPAAAGFRKVILA----TNIAETSVTIPGI-KYVIDPGFV 341 (511)
Q Consensus 305 i~~~f~~g~~~vlva----T~~~~~Gvdip~v-~~VI~~g~~ 341 (511)
+++.|++|+.+|||| |+++++|+|+|+| ++||++|..
T Consensus 311 ~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 311 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 778899999999999 9999999999995 999997665
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=5.9e-30 Score=267.96 Aligned_cols=297 Identities=14% Similarity=0.087 Sum_probs=187.2
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
.+.++++|.+++..+.++++.++++|||||||.++..++..... .++.+++++.|++.++.|..+++.++... ....+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v 188 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRLF-SHAMI 188 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHH-HCSSEEEEEESSHHHHHHHHHHHHHTTSS-CGGGE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHh-CCCCeEEEEECcHHHHHHHHHHHHHhhcC-Cccce
Confidence 44789999999999999999999999999999777655554332 22347889999999999999988655221 11122
Q ss_pred eEEEeecccCC---h-----hhhHHHHhhC--cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccccCCCCCCCCC
Q 010422 92 GYSIRFDDRTS---T-----STRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNN 161 (511)
Q Consensus 92 g~~~~~~~~~~---~-----~~~i~~~l~~--~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 161 (511)
+.......... . ......+..+ ..+.+++++|+||+|...... +..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~------~~~i----------------- 245 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKS------ISSI----------------- 245 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHH------HHHH-----------------
T ss_pred EEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCccc------HHHH-----------------
Confidence 21111111100 0 0111133333 356789999999999654311 1111
Q ss_pred CCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHH-----HHHhhhCCCCeEEeCC-------ccccccEEE
Q 010422 162 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR-----GFSEYFGCAKAVHVQG-------RQFPVEILY 229 (511)
Q Consensus 162 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-----~l~~~~~~~~~~~~~~-------~~~~~~~~~ 229 (511)
+..+. ...++++||||+... .+..+++. ....++. ...+.....
T Consensus 246 -------------------l~~~~----~~~~~l~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 301 (510)
T 2oca_A 246 -------------------ISGLN----NCMFKFGLSGSLRDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINS 301 (510)
T ss_dssp -------------------GGGCT----TCCEEEEEESCGGGCSSCHHHHHHHHCS-EECCCCCC---------CCEEEE
T ss_pred -------------------HHhcc----cCcEEEEEEeCCCCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEE
Confidence 11111 456899999999222 12334432 1111111 111111110
Q ss_pred --cCCCC--------CchHH------------HHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 010422 230 --TLYPE--------PDYLD------------ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 287 (511)
Q Consensus 230 --~~~~~--------~~~~~------------~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~ 287 (511)
...+. ..+.. ..+...+.......+.+++||++ .++++.+++.|.+. +
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~---------~ 371 (510)
T 2oca_A 302 IFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE---------Y 371 (510)
T ss_dssp EEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT---------C
T ss_pred EeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc---------C
Confidence 00000 11111 11111111122223445666666 88888888888764 3
Q ss_pred eEEEEccCCCCHHHHHhhcCcCCCCCeEEEEec-cccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHH
Q 010422 288 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT-NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (511)
Q Consensus 288 ~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT-~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~ 366 (511)
..+..+||+++.++|.++++.|++|+.+||||| +++++|+|+|++++||. || .|.+..+|.
T Consensus 372 ~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~----------~~~s~~~~~ 433 (510)
T 2oca_A 372 DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--------AH----------GVKSKIIVL 433 (510)
T ss_dssp SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SS----------CCCSCCHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE--------eC----------CCCCHHHHH
Confidence 478899999999999999999999999999999 99999999999999998 66 467778899
Q ss_pred HhccccCCCCCC-eEEEecC
Q 010422 367 QRSGRAGREGPG-KCFRLYP 385 (511)
Q Consensus 367 Qr~GRaGR~~~G-~~~~l~~ 385 (511)
||+||+||.|+| .++.+++
T Consensus 434 Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 434 QTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHTTTCCCCCCEEEE
T ss_pred HHHhcccccCCCCceEEEEE
Confidence 999999999954 3555654
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=5.8e-28 Score=255.26 Aligned_cols=337 Identities=18% Similarity=0.143 Sum_probs=206.0
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
..+.++++|...+..+.+|+ +..++||+|||..+.++++..... +..+.++.|++.+|.+.++.+..... ..+..
T Consensus 80 lG~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--g~~vlVltptreLA~qd~e~~~~l~~-~lgl~ 154 (844)
T 1tf5_A 80 TGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--GKGVHVVTVNEYLASRDAEQMGKIFE-FLGLT 154 (844)
T ss_dssp HSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHHHHH-HTTCC
T ss_pred cCCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHHHHh-hcCCe
Confidence 45689999999999999999 889999999996555555433222 44688889999999998887654432 22344
Q ss_pred eeEEEeec------------ccCChhhhH-HHHhh--------CcCCCCCCchhHhhhhhhhhhh--------------H
Q 010422 91 VGYSIRFD------------DRTSTSTRI-KEALL--------DPYLSRYSAIIVDEAHERTVHT--------------D 135 (511)
Q Consensus 91 vg~~~~~~------------~~~~~~~~i-~~~l~--------~~~l~~~~~iIiDE~H~r~~~~--------------~ 135 (511)
++...... -...++.++ ..++. ...++++.++|+|||+..-.+. .
T Consensus 155 v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 155 VGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp EEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 44322211 111122222 11222 1346788999999998643121 1
Q ss_pred HHHHHHHHHHHhhccccCCCCCCC-----------------------CCCCCch----hh---------h----------
Q 010422 136 VLLGLLKKVQNARSKSADGHSNGN-----------------------NNNENSD----MI---------L---------- 169 (511)
Q Consensus 136 ~ll~~l~~~~~~~~~~~~~~~~~~-----------------------~~g~~~~----~~---------l---------- 169 (511)
.+...+..++..-.. ..-...++ .+.+.+- .+ +
T Consensus 235 ~~~~~i~~iv~~l~~-~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~d 313 (844)
T 1tf5_A 235 KLYVQANAFVRTLKA-EKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVED 313 (844)
T ss_dssp HHHHHHHHHHTTCCS-SSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEET
T ss_pred hHHHHHHHHHHhCcc-cccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEec
Confidence 233344444432110 00000000 1111100 00 0
Q ss_pred ------cc--CC---CCCCcc-------------------cccccccc--CCCCccEEEeccCC--CHHHHHhhhCCCCe
Q 010422 170 ------DR--GN---DTNGIN-------------------TLKQCQGR--KFAPLKLIIMSASL--DARGFSEYFGCAKA 215 (511)
Q Consensus 170 ------~~--~~---~~~~~~-------------------~~~~~~~~--~~~~~~~i~~SAT~--~~~~l~~~~~~~~~ 215 (511)
|. ++ +..|.+ .+..+... ...-.++.+||+|. ..+.|.+.++ ..+
T Consensus 314 g~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~-l~v 392 (844)
T 1tf5_A 314 GQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYN-MQV 392 (844)
T ss_dssp TEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHC-CCE
T ss_pred CeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhC-Cce
Confidence 00 00 000000 00000000 00113678999999 4456666665 345
Q ss_pred EEeCCcccccc------EEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeE
Q 010422 216 VHVQGRQFPVE------ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV 289 (511)
Q Consensus 216 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~ 289 (511)
+.++.. .|.. ..|. ...+.....+..+...+ ..+.++||||+|++.++.++..|.+. ++.
T Consensus 393 v~IPtn-~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~~---------gi~ 458 (844)
T 1tf5_A 393 VTIPTN-RPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNK---------GIP 458 (844)
T ss_dssp EECCCS-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTT---------TCC
T ss_pred EEecCC-CCcccccCCcEEEe--CHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC---------CCC
Confidence 555432 2221 1221 12222333333333322 23678999999999999999999886 888
Q ss_pred EEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCC--------CeEEEEeCCcccceeecCCCCcccceeeecC
Q 010422 290 TVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (511)
Q Consensus 290 v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip--------~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s 361 (511)
+..+||++.+.+|..+.++++.| .|+||||+|+||+||+ ++.+||+ || .|.|
T Consensus 459 ~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn--------~d----------~p~s 518 (844)
T 1tf5_A 459 HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG--------TE----------RHES 518 (844)
T ss_dssp CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE--------SS----------CCSS
T ss_pred EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE--------ec----------CCCC
Confidence 99999999888888788888766 5999999999999999 8999999 77 6999
Q ss_pred HHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 362 KAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 362 ~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
...|.||+|||||.| +|.++.+++.++
T Consensus 519 ~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 519 RRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999999 999999987654
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=1.5e-27 Score=253.98 Aligned_cols=299 Identities=18% Similarity=0.118 Sum_probs=165.7
Q ss_pred CCCHHHHHHHHHHHhc-----CCEEEEEcCCCCchhchHHHHHhhccccC-------CCeEEEEeCccHHHHHHHH-HHH
Q 010422 13 LPIASVEKRLVEEVRK-----NDILIIVGETGSGKTTQLPQFLFHAGFCR-------DGKLIGVTQPRRVAAVTVA-KRV 79 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~-----~~~~~i~apTGsGKTt~~~~~l~~~~~~~-------~~~~i~~~~p~~~l~~~~~-~~~ 79 (511)
..++++|.+++..+.+ ++.+++++|||||||.++..++....... .+.+++++.|++.++.|.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4688999999998765 46789999999999966544443322221 3567889999999998887 433
Q ss_pred HHHhCCccCCeeeEEEe--ecccCChhhhHHHH------hhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhccc
Q 010422 80 AEESGVELGQRVGYSIR--FDDRTSTSTRIKEA------LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (511)
Q Consensus 80 ~~~~~~~~~~~vg~~~~--~~~~~~~~~~i~~~------l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~ 151 (511)
.. .+.......+.... .+-.+.+...+... ........+++||+||||.......
T Consensus 257 ~~-~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~---------------- 319 (590)
T 3h1t_A 257 TP-FGDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDN---------------- 319 (590)
T ss_dssp TT-TCSSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------------------
T ss_pred Hh-cchhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccch----------------
Confidence 22 22111000000000 00001112222211 1112245689999999994321100
Q ss_pred cCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCC---CHHHHHhhhCCCCeEEeC-------Cc
Q 010422 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL---DARGFSEYFGCAKAVHVQ-------GR 221 (511)
Q Consensus 152 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~---~~~~l~~~~~~~~~~~~~-------~~ 221 (511)
..+..++..+ +..++++||||+ +......+|+.. ..... +.
T Consensus 320 -----------------------~~~~~il~~~-----~~~~~l~lTATP~~~~~~~~~~~f~~~-~~~~~~~~~i~~~~ 370 (590)
T 3h1t_A 320 -----------------------SNWREILEYF-----EPAFQIGMTATPLREDNRDTYRYFGNP-IYTYSLRQGIDDGF 370 (590)
T ss_dssp -------------------------CHHHHHHS-----TTSEEEEEESSCSCTTTHHHHHHSCSC-SEEECHHHHHHHTS
T ss_pred -----------------------HHHHHHHHhC-----CcceEEEeccccccccchhHHHHcCCc-eEecCHHHHhhCCc
Confidence 0111111111 446899999998 223456677642 22211 00
Q ss_pred cccccEEEcCC--------------------------CCCc---------hHHHHHHHHHHHh-hcCCCCcEEEEcCCHH
Q 010422 222 QFPVEILYTLY--------------------------PEPD---------YLDATLITIFQVH-LDEAPGDILVFLTGQE 265 (511)
Q Consensus 222 ~~~~~~~~~~~--------------------------~~~~---------~~~~~~~~~~~~~-~~~~~~~~LVF~~s~~ 265 (511)
..|........ ...+ ........+.... ...+.+++||||++++
T Consensus 371 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~ 450 (590)
T 3h1t_A 371 LAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQE 450 (590)
T ss_dssp SCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHH
T ss_pred cCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHH
Confidence 11111110000 0000 0011112222222 2244689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeE---EEEeccccccCCCCCCeEEEEeCCccc
Q 010422 266 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK---VILATNIAETSVTIPGIKYVIDPGFVK 342 (511)
Q Consensus 266 ~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~---vlvaT~~~~~Gvdip~v~~VI~~g~~~ 342 (511)
+++.+++.|.+......... ...+..+||+++ ++|+++++.|++|..+ |+|||+++++|+|+|++++||.
T Consensus 451 ~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----- 523 (590)
T 3h1t_A 451 HADEMRRALNNLNSDLSRKH-PDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----- 523 (590)
T ss_dssp HHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE-----
T ss_pred HHHHHHHHHHHhhhhhhccC-CCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE-----
Confidence 99999999987633211111 223677899875 4799999999998765 8999999999999999999998
Q ss_pred ceeecCCCCcccceeeecCHHHHHHhccccCCCCC
Q 010422 343 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (511)
Q Consensus 343 ~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~ 377 (511)
|+ .|.|...|+||+||+||.++
T Consensus 524 ---~~----------~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 524 ---AR----------VVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp ---ES----------CCCCHHHHHHHHTTSCCCBG
T ss_pred ---Ee----------cCCChHHHHHHHhhhcccCc
Confidence 77 57889999999999999874
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=1.4e-26 Score=244.04 Aligned_cols=165 Identities=19% Similarity=0.118 Sum_probs=123.8
Q ss_pred cEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEEcCCCCCchHHHHHHHHHHHhh--cCCCCcEEEEcCCHHHHH
Q 010422 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHL--DEAPGDILVFLTGQEEIE 268 (511)
Q Consensus 193 ~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~LVF~~s~~~~~ 268 (511)
++.+||+|. ..+.|.+.++ ..++.+|. ..|....................+..... ...+.++||||+|++.++
T Consensus 378 kl~GmTGTa~te~~ef~~iY~-l~vv~IPt-n~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYK-LDTVVVPT-NRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHC-CEEEECCC-SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhhcCCCCchhHHHHHHHHhC-CcEEEcCC-CCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 688999999 5567777775 44666663 23322111110000011223333333221 134678999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCC-----------------
Q 010422 269 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG----------------- 331 (511)
Q Consensus 269 ~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~----------------- 331 (511)
.+++.|.+. ++.+..+||++...++..+.++|+.| .|+||||+|+||+||+.
T Consensus 456 ~Ls~~L~~~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~ 524 (853)
T 2fsf_A 456 LVSNELTKA---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAE 524 (853)
T ss_dssp HHHHHHHHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSS
T ss_pred HHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhH
Confidence 999999987 88899999999888888889999988 69999999999999987
Q ss_pred ---------------e-----EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 332 ---------------I-----KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 332 ---------------v-----~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
| .+||+ || .|.|...|.||+||+||.| +|.++.+++.++
T Consensus 525 ~~~~~~~~~~~~~~~V~~~GGl~VI~--------te----------~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 525 QIEKIKADWQVRHDAVLEAGGLHIIG--------TE----------RHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEE--------SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHhhhhhhHHHhcCCcEEEE--------cc----------CCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 69999 77 6999999999999999999 999988886554
No 52
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=5.7e-28 Score=222.17 Aligned_cols=171 Identities=20% Similarity=0.337 Sum_probs=143.0
Q ss_pred HHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecccc
Q 010422 244 TIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA 323 (511)
Q Consensus 244 ~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~ 323 (511)
.+..+....+++++||||+++++++.+++.|.+. ++.+..+||+|++++|.++++.|++|..+|||||+++
T Consensus 21 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 21 VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91 (212)
T ss_dssp HHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTT
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChh
Confidence 3344444455789999999999999999999887 8889999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhH-------------
Q 010422 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF------------- 389 (511)
Q Consensus 324 ~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~------------- 389 (511)
++|+|+|++++||+ || .|.+..+|+||+|||||.| +|.|+.++++.+.
T Consensus 92 ~~Gidi~~v~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 92 ARGLDIPQVDLVVH--------YR----------LPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp TCSSSCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred hcCCCCccCcEEEE--------CC----------CCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999 66 5889999999999999999 9999999998763
Q ss_pred -hhccCCCCCcccccCccHHHHHHHHcCCCCCCcc-----cCCCCCCHHHHHHHHHHH
Q 010422 390 -DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF-----DFMEKPSRASIIKSLEQL 441 (511)
Q Consensus 390 -~~~~~~~~pei~~~~l~~~~L~~~~~~~~~~~~~-----~~~~~p~~~~l~~al~~L 441 (511)
..+.....+++.+..+..+++.++.++..+...| +|+++|..+.+..|+..|
T Consensus 154 ~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 154 FKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 2344455567777788888888887765443333 567788888888888765
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.94 E-value=2.6e-25 Score=234.71 Aligned_cols=341 Identities=18% Similarity=0.119 Sum_probs=205.9
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
...+.++++|...+..+.+|+ +..++||+|||..+.++++..... +..+.++.|++.++.+.++.+..... ..+.
T Consensus 107 ~lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--g~~v~VvTpTreLA~Qdae~m~~l~~-~lGL 181 (922)
T 1nkt_A 107 VLDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--GNGVHIVTVNDYLAKRDSEWMGRVHR-FLGL 181 (922)
T ss_dssp HHSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--TSCEEEEESSHHHHHHHHHHHHHHHH-HTTC
T ss_pred HcCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHHHHHh-hcCC
Confidence 346689999999999999998 889999999995554444332222 44688889999999988877654432 2334
Q ss_pred eeeEEEeec------------ccCChhhhH-HHHhhC--------cCCCCCCchhHhhhhhhhhhh--------------
Q 010422 90 RVGYSIRFD------------DRTSTSTRI-KEALLD--------PYLSRYSAIIVDEAHERTVHT-------------- 134 (511)
Q Consensus 90 ~vg~~~~~~------------~~~~~~~~i-~~~l~~--------~~l~~~~~iIiDE~H~r~~~~-------------- 134 (511)
.+|...... -...++.++ ..++.+ ..++++.++|+||||..-.+.
T Consensus 182 sv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~ 261 (922)
T 1nkt_A 182 QVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGA 261 (922)
T ss_dssp CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCC
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcc
Confidence 444332211 011122222 122222 345789999999999543211
Q ss_pred HHHHHHHHHHHHhhc----------cccCC----------------CCCCCCCCC-----------------Cchhh---
Q 010422 135 DVLLGLLKKVQNARS----------KSADG----------------HSNGNNNNE-----------------NSDMI--- 168 (511)
Q Consensus 135 ~~ll~~l~~~~~~~~----------~~~~~----------------~~~~~~~g~-----------------~~~~~--- 168 (511)
..+...+..++..-. ..... ...+..... +.+++
T Consensus 262 ~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~d 341 (922)
T 1nkt_A 262 SNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRD 341 (922)
T ss_dssp HHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECS
T ss_pred hhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeec
Confidence 122233333332211 00000 001111000 00000
Q ss_pred -----hccCCC---------------------CCCc---ccccccccc--CCCCccEEEeccCC--CHHHHHhhhCCCCe
Q 010422 169 -----LDRGND---------------------TNGI---NTLKQCQGR--KFAPLKLIIMSASL--DARGFSEYFGCAKA 215 (511)
Q Consensus 169 -----l~~~~~---------------------~~~~---~~~~~~~~~--~~~~~~~i~~SAT~--~~~~l~~~~~~~~~ 215 (511)
+|..-+ -.+. ..+..+... ...-.++.+||+|. ..+.|.+.++ ..+
T Consensus 342 g~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~-l~v 420 (922)
T 1nkt_A 342 GEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK-LGV 420 (922)
T ss_dssp SCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC-CEE
T ss_pred CceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhC-CCe
Confidence 010000 0000 011111100 00113789999999 4456777775 446
Q ss_pred EEeCCccccccEEEc----CCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010422 216 VHVQGRQFPVEILYT----LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (511)
Q Consensus 216 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (511)
+.+|... |...... .....+.....+..+...+ ..+.++||||+|++.++.+++.|.+. ++.+.
T Consensus 421 v~IPtn~-p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~ 488 (922)
T 1nkt_A 421 VSIPTNM-PMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTKR---------RIPHN 488 (922)
T ss_dssp EECCCSS-CCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHT---------TCCCE
T ss_pred EEeCCCC-CcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC---------CCCEE
Confidence 6666532 2211111 1112222233333333322 23568999999999999999999987 88899
Q ss_pred EccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCe---------------------------------------
Q 010422 292 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI--------------------------------------- 332 (511)
Q Consensus 292 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v--------------------------------------- 332 (511)
.+||++...++..+.++++.| .|+||||+|+||+||+.+
T Consensus 489 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 566 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 999999888888888999888 699999999999999975
Q ss_pred -------------EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 333 -------------KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 333 -------------~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
.+||+ || .|.|...|.||+||+||.| +|.+..+++.++
T Consensus 567 ~~~~~~~V~~~GGlhVI~--------te----------~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 567 ASKEAKEVIEAGGLYVLG--------TE----------RHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp TTHHHHHHHHTTSEEEEE--------CS----------CCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred HHHhhhHHHhcCCcEEEe--------cc----------CCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 69999 77 6999999999999999999 999988886543
No 54
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=4.5e-27 Score=226.29 Aligned_cols=189 Identities=20% Similarity=0.305 Sum_probs=149.3
Q ss_pred EEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhc
Q 010422 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 306 (511)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 306 (511)
..+...+..+..+. +.++.....++++||||+|+++++.+++.|.+. ++.+..+||+|++.+|..++
T Consensus 5 ~~~i~~~~~~K~~~----L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 5 EEAVPAPVRGRLEV----LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp EEEEECCSSSHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHHHH
T ss_pred EEEEECCHHHHHHH----HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHH
Confidence 34444444444333 333333334889999999999999999999775 78899999999999999999
Q ss_pred CcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecC
Q 010422 307 APAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (511)
Q Consensus 307 ~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 385 (511)
+.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| +|.||.+++
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--------~d----------~p~s~~~y~Qr~GRagR~g~~G~~i~l~~ 133 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YR----------MPDRAEAYQHRSGRTGRAGRGGRVVLLYG 133 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEE--------SS----------CCSSTTHHHHHHTCCC-----CEEEEEEC
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEE--------cC----------CCCCHHHHHHHccCcCcCCCCceEEEEeC
Confidence 9999999999999999999999999999999 66 5889999999999999999 999999998
Q ss_pred hhh--------------HhhccCCCCCcccccCccHHHHHHHHcCCCCCCcc-----cCCCCCCHHHHHHHHHHHHHcCC
Q 010422 386 ENE--------------FDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF-----DFMEKPSRASIIKSLEQLFLLGA 446 (511)
Q Consensus 386 ~~~--------------~~~~~~~~~pei~~~~l~~~~L~~~~~~~~~~~~~-----~~~~~p~~~~l~~al~~L~~~g~ 446 (511)
+.+ ++.+.....+++.+..+..+++.++.++..+...| +|+++|+.+.+..|+..|.....
T Consensus 134 ~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 134 PRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp SSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 776 33355556678888889999988887654443333 45677899999999999965544
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=3e-25 Score=246.78 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=101.6
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCC--eEEEEe
Q 010422 242 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF--RKVILA 319 (511)
Q Consensus 242 ~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~--~~vlva 319 (511)
...+..+....+++++||||++++.++.++..|.+.. ++.+..+||+|++.+|.++++.|++|+ .+||||
T Consensus 491 ~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~--------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 491 VEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE--------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp HHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT--------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 3444445545668899999999999999999997521 678999999999999999999999998 999999
Q ss_pred ccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CC--eEEEecCh
Q 010422 320 TNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG--KCFRLYPE 386 (511)
Q Consensus 320 T~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G--~~~~l~~~ 386 (511)
|+++++|+|+|++++||+ || .|.+...|.||+||+||.| .| .+|.++.+
T Consensus 563 T~v~~~GlDl~~~~~VI~--------~d----------~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~ 614 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVM--------FD----------LPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLE 614 (968)
T ss_dssp SCCTTCSSCCTTCCEEEC--------SS----------CCSSHHHHHHHHHTTSCSSSCSCCEEEEEEET
T ss_pred cchhhcCCCcccCcEEEE--------ec----------CCCCHHHHHHHhhccccCCCCceEEEEEecCC
Confidence 999999999999999999 88 5889999999999999999 55 34444443
No 56
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.90 E-value=1.2e-22 Score=209.93 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=121.1
Q ss_pred ccEEEeccCC--CHHHHHhhhCCCCeEEeCCccccccEEE---cCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 192 LKLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILY---TLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 192 ~~~i~~SAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
.++.+||+|+ ..+.|.+.++ ..++.++.......... ......+.....+..+...+. .+.++||||+|++.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYG-MEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYK--KGQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSC-CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHhC-CeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhh--CCCCEEEEECCHHH
Confidence 3689999999 4556766665 45666654321111111 011122233333333333322 36789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCC--------CeEEEEeC
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDP 338 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip--------~v~~VI~~ 338 (511)
++.+++.|.+. ++....+||+....++..+..+++.| .|+||||+|+||+||+ +..+||+
T Consensus 487 sE~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn- 554 (822)
T 3jux_A 487 SELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG- 554 (822)
T ss_dssp HHHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE-
T ss_pred HHHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe-
Confidence 99999999876 88889999997666666666677666 5999999999999998 6679999
Q ss_pred CcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhh
Q 010422 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (511)
Q Consensus 339 g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 388 (511)
|| .|.|...|.||+|||||.| +|.++.+++.++
T Consensus 555 -------te----------~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 555 -------TE----------RHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp -------SS----------CCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred -------cC----------CCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 77 6999999999999999999 999999987654
No 57
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=3.1e-22 Score=213.76 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=123.0
Q ss_pred CccEEEeccCCCHHHHHhhhCCCCeEEeCCcc----ccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 191 PLKLIIMSASLDARGFSEYFGCAKAVHVQGRQ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 191 ~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
..+++++|||+....+.. ....+....+. .|. +.. .+........+..+..... .+.++||||+|++.
T Consensus 380 ~~q~i~~SAT~~~~~~~~---~~~~~~~~~r~~~l~~p~-i~v--~~~~~~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH---SGRVVEQIIRPTGLLDPL-VRV--KPTENQILDLMEGIRERAA--RGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH---CSEEEEECSCTTCCCCCE-EEE--ECSTTHHHHHHHHHHHHHH--TTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh---hhCeeeeeeccCCCCCCe-EEE--ecccchHHHHHHHHHHHHh--cCCEEEEEECCHHH
Confidence 468899999996544432 11112221111 111 111 1122333444444333222 36799999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceee
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 346 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~y 346 (511)
++.+++.|.+. ++.+..+||++++.+|.++++.|++|..+|+|||+++++|+|+|++++||+ |
T Consensus 452 ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~--------~ 514 (664)
T 1c4o_A 452 AEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI--------L 514 (664)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE--------T
T ss_pred HHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEE--------e
Confidence 99999999886 778899999999999999999999999999999999999999999999999 5
Q ss_pred cCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChh
Q 010422 347 DPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 387 (511)
Q Consensus 347 d~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 387 (511)
|... ...|.|..+|+||+|||||.++|.|+.++++.
T Consensus 515 d~d~-----~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 515 DADK-----EGFLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp TTTS-----CSGGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred CCcc-----cCCCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 5211 11378999999999999999999999999654
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.89 E-value=4.9e-23 Score=214.88 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=91.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-CeE-EEEeccccccCCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRK-VILATNIAETSVTIP 330 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~-vlvaT~~~~~Gvdip 330 (511)
++.++|||+++++.++.++..|.+.. +..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~ 411 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 411 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCT
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchh
Confidence 47789999999999999999998743 56677889999999999999999988 454 799999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCC---CeEEEecChhh
Q 010422 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP---GKCFRLYPENE 388 (511)
Q Consensus 331 ~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~---G~~~~l~~~~~ 388 (511)
++++||. || .|.++..+.||+||++|.|+ ..+|+++.+..
T Consensus 412 ~~~~vi~--------~d----------~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 412 SANRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp TCSEEEE--------SS----------CCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred hCCEEEE--------eC----------CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999 88 47788889999999999993 34677776553
No 59
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=189.97 Aligned_cols=172 Identities=42% Similarity=0.625 Sum_probs=140.5
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC---CeEEEEeCccHHHHHHHHHHHHH
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---GKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~---~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
++.+.+..+|++++|++++..+.+|++++++||||||||+++..++++.....+ +..++++.|++.++.++.+++..
T Consensus 52 ~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp HHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 455667789999999999999999999999999999999998888876543322 34788999999999999999998
Q ss_pred HhCCccCCeeeEEEeecccC---------ChhhhHHHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhhcccc
Q 010422 82 ESGVELGQRVGYSIRFDDRT---------STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (511)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~~~---------~~~~~i~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~~~~~ 152 (511)
..+..++..+|+..+..... .+..++...+.. .+.+++++|+||+|+++...+..+..++.+...+
T Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~---- 206 (235)
T 3llm_A 132 ERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY---- 206 (235)
T ss_dssp TTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC----
T ss_pred HhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC----
Confidence 88888888899876654332 233344444433 5889999999999999899999988888887766
Q ss_pred CCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCHHHHHhhhCCCCeEEe
Q 010422 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHV 218 (511)
Q Consensus 153 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~l~~~~~~~~~~~~ 218 (511)
++.|+++||||++.+.+++||++++++.+
T Consensus 207 -------------------------------------~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 207 -------------------------------------PEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp -------------------------------------TTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred -------------------------------------CCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 67899999999988889999998887653
No 60
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=8.4e-23 Score=182.00 Aligned_cols=129 Identities=17% Similarity=0.256 Sum_probs=106.2
Q ss_pred HHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEec
Q 010422 241 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT 320 (511)
Q Consensus 241 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT 320 (511)
....+..+....+.+++||||++++.++.++..|.+. ++.+..+||+|++.+|..+++.|++|..+|||||
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 4445555655566789999999999999999999875 7889999999999999999999999999999999
Q ss_pred cccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhHh
Q 010422 321 NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 390 (511)
Q Consensus 321 ~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 390 (511)
+++++|+|+|++++||+ ||...... ...+..+|+||+|||||.| .|.|+.++++.+..
T Consensus 92 ~~~~~Gid~~~~~~Vi~--------~d~p~~~~----~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 92 NVCARGIDVKQVTIVVN--------FDLPVKQG----EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp CSCCTTTCCTTEEEEEE--------SSCCC--C----CSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred cchhcCCCcccCCEEEE--------eCCCCCcc----ccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 99999999999999999 77311100 1188999999999999998 89999999887653
No 61
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=7e-23 Score=180.22 Aligned_cols=136 Identities=23% Similarity=0.385 Sum_probs=113.8
Q ss_pred ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 010422 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (511)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 304 (511)
+...+...+..+.... +..+.....++++||||++++.++.+++.|.+. ++.+..+||+|++.+|..
T Consensus 10 i~~~~~~~~~~~K~~~----L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 10 IEHAVIQVREENKFSL----LKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp EEEEEEECCGGGHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEECChHHHHHH----HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 3444444444333333 333333345789999999999999999999875 788999999999999999
Q ss_pred hcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEe
Q 010422 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (511)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (511)
+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| .|.|+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVIN--------YD----------LPLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SS----------CCSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eC----------CCCCHHHHHHhccccCcCCCCceEEEE
Confidence 999999999999999999999999999999999 77 5889999999999999999 8999999
Q ss_pred cChhhHhh
Q 010422 384 YPENEFDK 391 (511)
Q Consensus 384 ~~~~~~~~ 391 (511)
+++.+...
T Consensus 139 ~~~~~~~~ 146 (163)
T 2hjv_A 139 VTAFEKRF 146 (163)
T ss_dssp ECGGGHHH
T ss_pred ecHHHHHH
Confidence 98776543
No 62
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.87 E-value=1.1e-22 Score=179.31 Aligned_cols=117 Identities=19% Similarity=0.446 Sum_probs=102.2
Q ss_pred HHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccC
Q 010422 247 QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS 326 (511)
Q Consensus 247 ~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~G 326 (511)
.+....+.+++||||++++.++.++..|.+. ++.+..+||+|++.+|.++++.|++|..+|||||+++++|
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 93 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcC
Confidence 3333445789999999999999999999875 7889999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhHh
Q 010422 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 390 (511)
Q Consensus 327 vdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 390 (511)
+|+|++++||+ || .|.+..+|.||+||+||.| .|.|+.++++++..
T Consensus 94 ~d~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 94 IDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp CCCCSCSEEEE--------SS----------CCSSGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred CCcccCCEEEE--------eC----------CCCCHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 99999999999 77 5888999999999999998 89999999876554
No 63
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.87 E-value=1.5e-21 Score=215.67 Aligned_cols=306 Identities=11% Similarity=0.020 Sum_probs=182.4
Q ss_pred CCCHHHHHHHHHHHhc--------------CCEEEEEcCCCCchhchHHHHHhhcccc-CCCeEEEEeCccHHHHHHHHH
Q 010422 13 LPIASVEKRLVEEVRK--------------NDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAK 77 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~--------------~~~~~i~apTGsGKTt~~~~~l~~~~~~-~~~~~i~~~~p~~~l~~~~~~ 77 (511)
..++++|.+++..+.+ ++..+++++||||||..+ .++...... ....+++++.|++.++.|..+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 3478999999988754 367899999999999554 333332221 123579999999999999888
Q ss_pred HHHHHhCCccCCeeeEE--------EeecccCChhhhHHHHhhC----cCCCCCCchhHhhhhhhhhhhHHHHHHHHHHH
Q 010422 78 RVAEESGVELGQRVGYS--------IRFDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (511)
Q Consensus 78 ~~~~~~~~~~~~~vg~~--------~~~~~~~~~~~~i~~~l~~----~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~ 145 (511)
.+..+....+....... ....-.+.+..++...+.. +.+....++|+||||... ... ..+.+.
T Consensus 349 ~f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~-~~~----~~~~I~ 423 (1038)
T 2w00_A 349 EYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ-FGE----AQKNLK 423 (1038)
T ss_dssp HHHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH-HHH----HHHHHH
T ss_pred HHHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc-chH----HHHHHH
Confidence 77654332111100000 0000111223333333221 235677899999999632 111 122221
Q ss_pred HhhccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCC-H------HHHHhhhCCCCeEEe
Q 010422 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD-A------RGFSEYFGCAKAVHV 218 (511)
Q Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~-~------~~l~~~~~~~~~~~~ 218 (511)
..- ++.++++||||+. . ....++||.. +..+
T Consensus 424 ~~~-----------------------------------------p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y 461 (1038)
T 2w00_A 424 KKF-----------------------------------------KRYYQFGFTGTPIFPENALGSETTASVFGRE-LHSY 461 (1038)
T ss_dssp HHC-----------------------------------------SSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEE
T ss_pred HhC-----------------------------------------CcccEEEEeCCccccccchhhhHHHHHhCCe-eEee
Confidence 111 5678999999992 2 2455667642 2221
Q ss_pred C-------CccccccEEEcCCC-------------------------CCchHHHHHHHHHHHhhc--------CCCCcEE
Q 010422 219 Q-------GRQFPVEILYTLYP-------------------------EPDYLDATLITIFQVHLD--------EAPGDIL 258 (511)
Q Consensus 219 ~-------~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~--------~~~~~~L 258 (511)
. +...|+.+.|.... .+.........++..... ..+++++
T Consensus 462 ~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kam 541 (1038)
T 2w00_A 462 VITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAM 541 (1038)
T ss_dssp CHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEE
T ss_pred cHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 1 22233333332210 011112222223222211 1246799
Q ss_pred EEcCCHHHHHHHHHHHHHHHhcC---CCCCCCeEE-EEccCC----------C----------CHH--------------
Q 010422 259 VFLTGQEEIESVERLVQERLLQL---PEASRKLVT-VPIFSS----------L----------PSE-------------- 300 (511)
Q Consensus 259 VF~~s~~~~~~l~~~l~~~~~~~---~~~~~~~~v-~~lh~~----------l----------~~~-------------- 300 (511)
|||+|+..|..+++.|.+..... .....+..+ ..+|++ + ++.
T Consensus 542 Vf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~ 621 (1038)
T 2w00_A 542 LAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNS 621 (1038)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999998764211 011112333 445542 2 221
Q ss_pred ---------------HHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHH
Q 010422 301 ---------------QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQA 365 (511)
Q Consensus 301 ---------------~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~ 365 (511)
+|..+.+.|++|.++|||+|+++.+|+|+|.+.+++ +| .|.+...|
T Consensus 622 ~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly---------lD----------kpl~~~~l 682 (1038)
T 2w00_A 622 HFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF---------VD----------KNLRYHGL 682 (1038)
T ss_dssp HHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE---------EE----------SCCCHHHH
T ss_pred HhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE---------Ec----------cCCCccce
Confidence 377888999999999999999999999999996554 77 57888999
Q ss_pred HHhccccCCCCC-----CeEEEecC
Q 010422 366 LQRSGRAGREGP-----GKCFRLYP 385 (511)
Q Consensus 366 ~Qr~GRaGR~~~-----G~~~~l~~ 385 (511)
+||+||+||.++ |.++.+..
T Consensus 683 iQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 683 MQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred eehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999884 66666664
No 64
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=1.7e-22 Score=179.31 Aligned_cols=132 Identities=18% Similarity=0.363 Sum_probs=112.2
Q ss_pred ccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHh
Q 010422 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (511)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 304 (511)
+..+|...+..+.. ..+..+....+.+++||||++++.++.+++.|.+. ++.+..+||+|++.+|..
T Consensus 6 i~q~~~~~~~~~K~----~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 6 LQQYYVKLKDNEKN----RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp CEEEEEECCGGGHH----HHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred eEEEEEECChHHHH----HHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHHH
Confidence 34444444443333 33344444456789999999999999999999886 788999999999999999
Q ss_pred hcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEe
Q 010422 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (511)
Q Consensus 305 i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 383 (511)
+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| .|.++.+
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d----------~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SS----------CCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------EC----------CCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 999999999999999999999999999999999 77 5889999999999999999 8999999
Q ss_pred cChh
Q 010422 384 YPEN 387 (511)
Q Consensus 384 ~~~~ 387 (511)
+++.
T Consensus 135 ~~~~ 138 (172)
T 1t5i_A 135 VSDE 138 (172)
T ss_dssp ECSH
T ss_pred EcCh
Confidence 9764
No 65
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=4e-21 Score=205.32 Aligned_cols=110 Identities=13% Similarity=0.243 Sum_probs=98.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe---EEEEeccccccCCC
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR---KVILATNIAETSVT 328 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~---~vlvaT~~~~~Gvd 328 (511)
..+.++|||++.++.++.++..|... ++.+..+||+++.++|.++++.|++|.. .+|+||.+++.|+|
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 34678999999999999999999887 8889999999999999999999998865 58999999999999
Q ss_pred CCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCCC---CeEEEecChhh
Q 010422 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP---GKCFRLYPENE 388 (511)
Q Consensus 329 ip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~---G~~~~l~~~~~ 388 (511)
++++++||. || .|.+++.+.|++||++|.|. ..+|++++...
T Consensus 485 l~~a~~Vi~--------~d----------~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 485 LIGANRLVM--------FD----------PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CTTEEEEEE--------CS----------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred cccCCEEEE--------EC----------CCCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 999999999 88 58899999999999999993 46777876553
No 66
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.86 E-value=4.9e-22 Score=178.33 Aligned_cols=111 Identities=22% Similarity=0.394 Sum_probs=90.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCe
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v 332 (511)
+++++||||++++.++.+++.|.+. ++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~ 115 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 115 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSB
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccC
Confidence 4788999999999999999999875 7889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhHh
Q 010422 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 390 (511)
Q Consensus 333 ~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 390 (511)
++||+ || .|.+..+|+||+||+||.| .|.|+.++++.+..
T Consensus 116 ~~VI~--------~d----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 116 KHVIN--------FD----------LPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 156 (185)
T ss_dssp SEEEE--------SS----------CCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGG
T ss_pred CEEEE--------eC----------CCCCHHHHHHHccccCCCCCCcEEEEEEchhhHH
Confidence 99999 77 5889999999999999999 99999999877654
No 67
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=176.31 Aligned_cols=116 Identities=21% Similarity=0.431 Sum_probs=103.1
Q ss_pred HHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecccc
Q 010422 244 TIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA 323 (511)
Q Consensus 244 ~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~ 323 (511)
.+..+.... ++++||||++++.++.+++.|.+. ++.+..+||++++++|.++++.|++|..+|||||+++
T Consensus 45 ~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~ 114 (191)
T 2p6n_A 45 YLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 114 (191)
T ss_dssp HHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHH
T ss_pred HHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCch
Confidence 344444333 568999999999999999999887 7889999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChh
Q 010422 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (511)
Q Consensus 324 ~~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 387 (511)
++|+|+|++++||+ || .|.+..+|+||+||+||.| .|.|+.++++.
T Consensus 115 ~~Gldi~~v~~VI~--------~d----------~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 115 SKGLDFPAIQHVIN--------YD----------MPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HTTCCCCCCSEEEE--------SS----------CCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred hcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999999999999 77 5889999999999999999 89999999764
No 68
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.74 E-value=1.2e-22 Score=180.05 Aligned_cols=120 Identities=19% Similarity=0.354 Sum_probs=107.3
Q ss_pred HHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccc
Q 010422 245 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE 324 (511)
Q Consensus 245 ~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~ 324 (511)
+..+....+++++||||++++.++.+++.|.+. ++.+..+||+|++.+|..+++.|++|..+|||||++++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 334444445788999999999999999999876 78899999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-CCeEEEecChhhHhh
Q 010422 325 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFDK 391 (511)
Q Consensus 325 ~Gvdip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 391 (511)
+|+|+|++++||+ || .|.+..+|+||+||+||.| .|.|+.+++..+...
T Consensus 92 ~Gid~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 92 RGIDIPDVSHVFN--------FD----------MPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 9999999999999 77 5889999999999999999 899999998775543
No 69
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.83 E-value=6.5e-20 Score=195.74 Aligned_cols=167 Identities=18% Similarity=0.178 Sum_probs=122.9
Q ss_pred CccEEEeccCCCHHHHHhhhCCCCeEEeCCc----cccccEEEcCCCCCchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 010422 191 PLKLIIMSASLDARGFSEYFGCAKAVHVQGR----QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (511)
Q Consensus 191 ~~~~i~~SAT~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~ 266 (511)
..+++++|||+....+.. . ...+....+ ..|. +.. .+........+..+.... ..++++||||+|++.
T Consensus 386 ~~q~i~~SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~-i~v--~~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH--T-DEMVEQIIRPTGLLDPL-IDV--RPIEGQIDDLIGEIQARI--ERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH--C-SSCEEECCCTTCCCCCE-EEE--ECSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh--h-hCeeeeeecccCCCCCe-EEE--ecccchHHHHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 468899999996544432 1 111121111 1111 111 112233344444333322 236789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCCcccceee
Q 010422 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 346 (511)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g~~~~~~y 346 (511)
++.+++.|.+. ++.+..+||++++.+|.++++.|++|..+|+|||+++++|+|+|++++||+ |
T Consensus 458 ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~--------~ 520 (661)
T 2d7d_A 458 SEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI--------L 520 (661)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE--------T
T ss_pred HHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE--------e
Confidence 99999999886 778899999999999999999999999999999999999999999999999 5
Q ss_pred cCCCCcccceeeecCHHHHHHhccccCCCCCCeEEEecChh
Q 010422 347 DPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 387 (511)
Q Consensus 347 d~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 387 (511)
|.... ..|.+..+|+||+|||||.++|.|+.++++.
T Consensus 521 d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 521 DADKE-----GFLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp TTTCC-----TTTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred Ccccc-----cCCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 52111 1378899999999999999999999999764
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.4e-20 Score=204.36 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=98.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCe---EEEEeccccccCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR---KVILATNIAETSVTI 329 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~---~vlvaT~~~~~Gvdi 329 (511)
.+.++|||+.....++.+...|... ++.+..+||+++..+|.++++.|+++.. .+|+||.+++.|+|+
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCc
Confidence 4678999999999999999999887 8889999999999999999999998544 599999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChhhHh
Q 010422 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFD 390 (511)
Q Consensus 330 p~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~ 390 (511)
+++++||. || .|.++..+.||.||++|.| +..+|+|+++...+
T Consensus 642 ~~a~~VI~--------~D----------~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 642 MTADTVVI--------FD----------SDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp TTCCEEEE--------SS----------CCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred cccceEEE--------ec----------CCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 99999999 88 4778899999999999999 46788888766443
No 71
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=147.99 Aligned_cols=119 Identities=20% Similarity=0.145 Sum_probs=79.0
Q ss_pred hhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-------CCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-------RDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-------~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
......++++|.+++..+.+|++++++||||||||..+..+++..... ..+.+++++.|++.++.|+.+++.+
T Consensus 37 ~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 37 RVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 344457899999999999999999999999999996655554433221 1355688999999999999998877
Q ss_pred HhCCccCCeeeEEEeec--------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhh
Q 010422 82 ESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (511)
Q Consensus 82 ~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~ 129 (511)
..... ..+....... -.+.+..++..++.. ..+.+++++|+||||.
T Consensus 117 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 178 (228)
T 3iuy_A 117 YSYKG--LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK 178 (228)
T ss_dssp HCCTT--CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH
T ss_pred hcccC--ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH
Confidence 64221 2222111111 111223333333332 3477899999999995
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.66 E-value=3e-16 Score=145.38 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=82.2
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
+.......++++|.+++..+.+|+++++++|||||||..+..+++...... .+.+++++.|++.++.|..+.+.+....
T Consensus 29 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (224)
T 1qde_A 29 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH 108 (224)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcc
Confidence 333444568999999999999999999999999999977666666544332 3457899999999999999887765432
Q ss_pred ccCCeeeEEEee-------------cccCChhhhHHHHhhC--cCCCCCCchhHhhhhhh
Q 010422 86 ELGQRVGYSIRF-------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 130 (511)
Q Consensus 86 ~~~~~vg~~~~~-------------~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r 130 (511)
.+..++..... +-...+...+...+.. ..+.+++++|+||+|..
T Consensus 109 -~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 109 -MDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 167 (224)
T ss_dssp -SCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred -cCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH
Confidence 22222211110 0111223333333332 34678999999999953
No 73
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.66 E-value=3.5e-16 Score=144.39 Aligned_cols=126 Identities=14% Similarity=0.096 Sum_probs=85.2
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
+.++......++++|.+++..+.+|+++++++|||||||..+..+++...... .+.+++++.|++.++.|+.+.+.+..
T Consensus 17 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 17 EAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 34444555678999999999999999999999999999977666666554432 34578899999999999998877665
Q ss_pred CCcc---CCeeeEEEeec--------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhh
Q 010422 84 GVEL---GQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 130 (511)
Q Consensus 84 ~~~~---~~~vg~~~~~~--------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r 130 (511)
.... +..++...... -.+.+..++...+.. ..+.+++++|+||+|..
T Consensus 97 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 97 KFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp TTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred hhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 3210 22222211110 111233344444433 24678999999999953
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=148.07 Aligned_cols=122 Identities=19% Similarity=0.192 Sum_probs=81.1
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-----CCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-----RDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-----~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
+.......++++|.+++..+.+|+++++++|||||||..+..+++..... ..+.+++++.|++.++.|+.+.+.+
T Consensus 40 l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 119 (236)
T 2pl3_A 40 LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK 119 (236)
T ss_dssp HHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 33444557899999999999999999999999999997666655543221 2355788999999999999988776
Q ss_pred HhCCccCCeeeEEEeecc-------------cCChhhhHHHHhh---CcCCCCCCchhHhhhhh
Q 010422 82 ESGVELGQRVGYSIRFDD-------------RTSTSTRIKEALL---DPYLSRYSAIIVDEAHE 129 (511)
Q Consensus 82 ~~~~~~~~~vg~~~~~~~-------------~~~~~~~i~~~l~---~~~l~~~~~iIiDE~H~ 129 (511)
... ..+..++....... .+.+..++...+. ...+.+++++|+||+|.
T Consensus 120 ~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 120 VGK-NHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp HTT-TSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred HhC-CCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 543 22233332211110 1122233333332 23467899999999994
No 75
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.66 E-value=2.7e-16 Score=146.31 Aligned_cols=119 Identities=18% Similarity=0.096 Sum_probs=81.5
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-CCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCe
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (511)
.-.++++|++++..+.+|+++++++|||||||..+..+++..... ..+.+++++.|++.++.|+.+.+.+......+..
T Consensus 44 ~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 123 (230)
T 2oxc_A 44 FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLE 123 (230)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCce
Confidence 334899999999999999999999999999997766666555432 2356789999999999999998877653322333
Q ss_pred eeEEEeec-------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhh
Q 010422 91 VGYSIRFD-------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 130 (511)
Q Consensus 91 vg~~~~~~-------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r 130 (511)
++...... -.+.+..++...+.. ..+.+++++|+||+|..
T Consensus 124 ~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 124 CHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp EEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH
T ss_pred EEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh
Confidence 33221110 111223333344333 24678899999999954
No 76
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=151.72 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=79.4
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-----CCCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-----RDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-----~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
....++++|.+++..+..|++++++||||||||..+..+++..... ..+.+++++.|++.++.|+.+.+.+...
T Consensus 73 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~- 151 (262)
T 3ly5_A 73 GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT- 151 (262)
T ss_dssp TCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT-
T ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh-
Confidence 3344899999999999999999999999999997665555543221 2355789999999999999998877654
Q ss_pred ccCCeeeEEEeecc--------------cCChhhhHHHHhh-C--cCCCCCCchhHhhhhh
Q 010422 86 ELGQRVGYSIRFDD--------------RTSTSTRIKEALL-D--PYLSRYSAIIVDEAHE 129 (511)
Q Consensus 86 ~~~~~vg~~~~~~~--------------~~~~~~~i~~~l~-~--~~l~~~~~iIiDE~H~ 129 (511)
..+..++....... .+.+..++...+. . ..+.+++++|+||+|.
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~ 212 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR 212 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH
T ss_pred hcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH
Confidence 23333333222111 1112222222222 2 3578899999999994
No 77
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.66 E-value=4.3e-16 Score=142.40 Aligned_cols=120 Identities=22% Similarity=0.108 Sum_probs=81.6
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc----CCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~----~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
++......++++|++++..+.+|+++++++|||||||..+..+++..... ..+.+++++.|++.++.+..+.+.+.
T Consensus 16 l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 16 LHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 33444457899999999999999999999999999997766666655432 23557899999999999999988776
Q ss_pred hCCccCCeeeEEEeecc--------------cCChhhhHHHHhh--CcCCCCCCchhHhhhhh
Q 010422 83 SGVELGQRVGYSIRFDD--------------RTSTSTRIKEALL--DPYLSRYSAIIVDEAHE 129 (511)
Q Consensus 83 ~~~~~~~~vg~~~~~~~--------------~~~~~~~i~~~l~--~~~l~~~~~iIiDE~H~ 129 (511)
... ..+........ ...+...+...+. ...+.+++++|+||+|.
T Consensus 96 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 96 APH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp CTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred hhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 542 11221111110 1112222323332 23467899999999995
No 78
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=151.48 Aligned_cols=124 Identities=12% Similarity=0.058 Sum_probs=86.1
Q ss_pred HHhhccCCCHHHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
+.....-.++++|.++++.+..| ++++++||||||||..+.++++...... .+.+++++.|++.++.|+.+.+....
T Consensus 107 l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp HHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 33445557899999999999987 9999999999999977766666655433 34478999999999999998877665
Q ss_pred CCccCCeeeEEEeec-----------ccCChhhhHHHHhhC---cCCCCCCchhHhhhhhh
Q 010422 84 GVELGQRVGYSIRFD-----------DRTSTSTRIKEALLD---PYLSRYSAIIVDEAHER 130 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~-----------~~~~~~~~i~~~l~~---~~l~~~~~iIiDE~H~r 130 (511)
....+..+++..... -.+.+..++..++.. ..+.+++++|+||+|..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 187 KFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp TTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH
T ss_pred hhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH
Confidence 432233333332211 112334455555533 34778999999999953
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=147.08 Aligned_cols=124 Identities=18% Similarity=0.141 Sum_probs=83.5
Q ss_pred hHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 5 ~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
+.++......++++|.+++..+.+|++++++||||||||..+..+++...... .+.+++++.|++.++.|+.+.+.+..
T Consensus 56 ~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 56 EACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 33444455578999999999999999999999999999987777766554332 24568999999999999998876654
Q ss_pred CCccCCeeeEEEeec--------------ccCChhhhHHHHhh---CcCCCCCCchhHhhhhh
Q 010422 84 GVELGQRVGYSIRFD--------------DRTSTSTRIKEALL---DPYLSRYSAIIVDEAHE 129 (511)
Q Consensus 84 ~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~l~---~~~l~~~~~iIiDE~H~ 129 (511)
. ..+..++...... -.+.+..++...+. ...+.+++++|+||||.
T Consensus 136 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 136 S-SIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp G-GGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred c-cCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 2 1222333221111 11122233333332 12467899999999994
No 80
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.65 E-value=3e-16 Score=147.20 Aligned_cols=166 Identities=19% Similarity=0.132 Sum_probs=102.2
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc------CCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC------RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~------~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
..-.++++|.+++..+.+|++++++||||||||..+..+++..... ..+.+++++.|+++++.|+.+.+.+...
T Consensus 48 g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 127 (242)
T 3fe2_A 48 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 127 (242)
T ss_dssp TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHh
Confidence 3345899999999999999999999999999996655555443221 2355688999999999999887665432
Q ss_pred CccCCeeeEEEee--------------cccCChhhhHHHHhh--CcCCCCCCchhHhhhhhhhhhhHHHHHHHHHHHHhh
Q 010422 85 VELGQRVGYSIRF--------------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (511)
Q Consensus 85 ~~~~~~vg~~~~~--------------~~~~~~~~~i~~~l~--~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~~~~~ 148 (511)
..+..++..... +-.+.+..++..++. ...+.+++++|+||+|..
T Consensus 128 -~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l------------------ 188 (242)
T 3fe2_A 128 -ACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRM------------------ 188 (242)
T ss_dssp -HTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHH------------------
T ss_pred -hcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHH------------------
Confidence 112222222111 111122333333332 234788999999999942
Q ss_pred ccccCCCCCCCCCCCCchhhhccCCCCCCccccccccccCCCCccEEEeccCCCH--HHHH-hhhCCCCeEEeC
Q 010422 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQ 219 (511)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~l~-~~~~~~~~~~~~ 219 (511)
++.++...+..++..+. ++.|+++||||++. +.+. .|+.++..+.+.
T Consensus 189 --------------------~~~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 189 --------------------LDMGFEPQIRKIVDQIR----PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp --------------------HHTTCHHHHHHHHTTSC----SSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred --------------------hhhCcHHHHHHHHHhCC----ccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 23333333333333332 67899999999954 3444 455544444443
No 81
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=4.9e-16 Score=141.93 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=82.0
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc-CCCeEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (511)
...-.++++|++++..+.+++++++++|||||||..+..+++..... ..+.+++++.|++.++.|+.+.+.+......+
T Consensus 21 ~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 34446899999999999999999999999999997666666654432 23457889999999999999888776543213
Q ss_pred CeeeEEEeecc--------------cCChhhhHHHHhhC--cCCCCCCchhHhhhhhh
Q 010422 89 QRVGYSIRFDD--------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 130 (511)
Q Consensus 89 ~~vg~~~~~~~--------------~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r 130 (511)
..++....... ...+..++...+.. ..+.+++++|+||+|..
T Consensus 101 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHH
T ss_pred ceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHh
Confidence 33332221110 11122333333332 24678999999999953
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.64 E-value=4.8e-16 Score=145.29 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=81.6
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccC-CCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~-~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
..-.++++|.+++..+.+|++++++||||||||..+..+++...... .+.+++++.|++.++.|+.+.+.+.... .+.
T Consensus 49 g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~ 127 (237)
T 3bor_A 49 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY-MGA 127 (237)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-TTC
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhh-cCc
Confidence 33348999999999999999999999999999977777776654332 3557899999999999999888765432 122
Q ss_pred eeeEEEe---------------ecccCChhhhHHHHhhC--cCCCCCCchhHhhhhhh
Q 010422 90 RVGYSIR---------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 130 (511)
Q Consensus 90 ~vg~~~~---------------~~~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r 130 (511)
.+..... .+-.+.+..++...+.. ..+.+++++|+||+|..
T Consensus 128 ~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 185 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEM 185 (237)
T ss_dssp CEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHH
T ss_pred eEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHh
Confidence 2211111 01112233444444443 24678999999999953
No 83
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=3.7e-15 Score=137.61 Aligned_cols=118 Identities=15% Similarity=0.016 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCC-CeEEEEeCccHHHHHHHHHHHHHHhCCccCCeee
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~-~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg 92 (511)
.++++|.+++..+.+++++++++|||||||..+..+++....... +.+++++.|++.++.|+.+.+.+......+..++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 115 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 115 (220)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEE
Confidence 489999999999999999999999999999777666666543322 4478999999999999998887765432233333
Q ss_pred EEEeec---------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhhhh
Q 010422 93 YSIRFD---------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERT 131 (511)
Q Consensus 93 ~~~~~~---------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~ 131 (511)
...... -.+.+..++...+.. ..+.+++++|+||+|...
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 116 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 171 (220)
T ss_dssp EESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred EEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHh
Confidence 221111 111222333333332 246789999999999654
No 84
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=144.26 Aligned_cols=121 Identities=19% Similarity=0.150 Sum_probs=82.1
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc--CCCeEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~ 88 (511)
....++++|.+++..+.+|++++++||||||||..+..+++..... ..+.+++++.|+++++.|+.+.+.+.... .+
T Consensus 48 g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~ 126 (245)
T 3dkp_A 48 GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEG-TG 126 (245)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTT-SC
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcc-cC
Confidence 3445899999999999999999999999999997665555544332 23557899999999999999988766432 22
Q ss_pred CeeeEEEe---------------ecccCChhhhHHHHhhC----cCCCCCCchhHhhhhhhhh
Q 010422 89 QRVGYSIR---------------FDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTV 132 (511)
Q Consensus 89 ~~vg~~~~---------------~~~~~~~~~~i~~~l~~----~~l~~~~~iIiDE~H~r~~ 132 (511)
..+..... .+-.+.+..++..++.. ..+.+++++|+||+|....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 22211100 01112334444444433 2477899999999997543
No 85
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=143.89 Aligned_cols=85 Identities=38% Similarity=0.705 Sum_probs=75.6
Q ss_pred CcccC-CCCCCHHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHccCCCCHHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcc
Q 010422 421 IGFDF-MEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIF 499 (511)
Q Consensus 421 ~~~~~-~~~p~~~~l~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~i~a~l~~~~~~ 499 (511)
..|+| ++||+.+++..|++.|..+||||+++++|+ +|+.|+++|++|++||||+.+..++|.+++++|+|+|+++++|
T Consensus 6 ~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~-lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 6 PEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTR-LGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp --------CCHHHHHHHHHHHHHHHTSBCTTSCBCH-HHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccH-HHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 34678 899999999999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred cCChhhh
Q 010422 500 FRSPGEV 506 (511)
Q Consensus 500 ~~~~~~~ 506 (511)
..|.++.
T Consensus 85 ~~p~~~~ 91 (270)
T 3i4u_A 85 YRPKDKQ 91 (270)
T ss_dssp CCCGGGH
T ss_pred cCCchhH
Confidence 9998653
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.60 E-value=1.8e-15 Score=142.90 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=78.4
Q ss_pred ccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc----------CCCeEEEEeCccHHHHHHHHHHHH
Q 010422 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----------RDGKLIGVTQPRRVAAVTVAKRVA 80 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~----------~~~~~i~~~~p~~~l~~~~~~~~~ 80 (511)
....++++|.+++..+.+|+++++++|||||||..+..+++..... ..+.+++++.|++.++.|+.+.+.
T Consensus 42 g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 121 (253)
T 1wrb_A 42 SYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQ 121 (253)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHH
Confidence 3345899999999999999999999999999997665555543221 123478899999999999998877
Q ss_pred HHhCCccCCeeeEEEeec--------------ccCChhhhHHHHhhC--cCCCCCCchhHhhhhh
Q 010422 81 EESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (511)
Q Consensus 81 ~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~l~~--~~l~~~~~iIiDE~H~ 129 (511)
+..... +..+....... -.+.+..++...+.. ..+.+++++|+||+|.
T Consensus 122 ~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 185 (253)
T 1wrb_A 122 KFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR 185 (253)
T ss_dssp HHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH
T ss_pred HHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH
Confidence 665321 22222211111 111223333343333 2467889999999995
No 87
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.55 E-value=2.7e-13 Score=143.24 Aligned_cols=115 Identities=20% Similarity=0.111 Sum_probs=75.8
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (511)
...+.++++|...+..+.+|+ +..+.||||||..+.++++..... +..+.++.|++.++.+.++.+..... ..+.
T Consensus 75 ~lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~-~lGL 149 (997)
T 2ipc_A 75 YLGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--GKGVHVVTVNDYLARRDAEWMGPVYR-GLGL 149 (997)
T ss_dssp HTCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--CSCCEEEESSHHHHHHHHHHHHHHHH-TTTC
T ss_pred HhCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHH-hcCC
Confidence 456688999999999999998 889999999996665555433222 44688889999999998887665543 3344
Q ss_pred eeeEEEeecc------------cCChhhhH-HHHhhC--------cCCC---CCCchhHhhhhh
Q 010422 90 RVGYSIRFDD------------RTSTSTRI-KEALLD--------PYLS---RYSAIIVDEAHE 129 (511)
Q Consensus 90 ~vg~~~~~~~------------~~~~~~~i-~~~l~~--------~~l~---~~~~iIiDE~H~ 129 (511)
.++....... ...+...+ ..++.+ ..++ ++.++|+||+|.
T Consensus 150 sv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 150 SVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp CEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred eEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 4553322111 01112222 122222 2356 789999999995
No 88
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.52 E-value=7e-15 Score=139.53 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=85.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCC-CeE-EEEeccccccCCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRK-VILATNIAETSVTIP 330 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~-vlvaT~~~~~Gvdip 330 (511)
.+.++|||++++..++.+...|.+.. ++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 37899999999999999999998742 56678899999999999999999988 666 799999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC---CCeEEEecChhhH
Q 010422 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 389 (511)
Q Consensus 331 ~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 389 (511)
++++||+ || .|.+++.+.||+||++|.| +-.+|+++++...
T Consensus 183 ~a~~VI~--------~d----------~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 183 SANRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp TCSEEEE--------CS----------CCSCTTTC--------------CCEEEEEEETTSH
T ss_pred cCCEEEE--------EC----------CCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999 88 5778888999999999999 3356888876533
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.50 E-value=4.8e-14 Score=147.43 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEE
Q 010422 239 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVIL 318 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 318 (511)
+.....+..+... .++++|||+||....+.+++.+.+ ..+ ..++.. .+|.++++.|+++. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~~-~~q~~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IPV-IEENKK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SCE-EESTTT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cce-EecCCC--CcHHHHHHHHhcCC-eEEE
Confidence 3344444444443 478899999999999998876632 223 335443 46778888887754 5666
Q ss_pred --eccccccCCCCCC----eEEEEeCCcccceeecCC-------------CCcccceeeecCHHHHHHhccccCCCC--C
Q 010422 319 --ATNIAETSVTIPG----IKYVIDPGFVKARLYDPV-------------KGMESLLVVPISKAQALQRSGRAGREG--P 377 (511)
Q Consensus 319 --aT~~~~~Gvdip~----v~~VI~~g~~~~~~yd~~-------------~~~~~~~~~p~s~~~~~Qr~GRaGR~~--~ 377 (511)
+|..+.+|||+|+ +++||..|+.-...-||. .+.... ..|.......|-+||+-|.. .
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Q~~GR~iR~~~D~ 512 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSI-IHDLTAIVIKQTIGRAFRDPNDY 512 (540)
T ss_dssp EEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHHHHCCSTTCC
T ss_pred EEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHH-HHHHHHHHHHHHhCCcccCCCcc
Confidence 8999999999998 899998776422221210 011000 01222567889999999976 6
Q ss_pred CeEEEe
Q 010422 378 GKCFRL 383 (511)
Q Consensus 378 G~~~~l 383 (511)
|..+.+
T Consensus 513 g~v~ll 518 (540)
T 2vl7_A 513 VKIYLC 518 (540)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 765554
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.45 E-value=7.7e-14 Score=128.08 Aligned_cols=120 Identities=22% Similarity=0.113 Sum_probs=75.2
Q ss_pred hccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc----CCCeEEEEeCccHHHHHH-HHHHHHHHhC
Q 010422 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVT-VAKRVAEESG 84 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~----~~~~~i~~~~p~~~l~~~-~~~~~~~~~~ 84 (511)
...++++++|.+++..+.+++++++.+|||||||+++..++...... ..+.+++++.|++.++.| ..+.+.++..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 34568999999999999999999999999999997776666543221 124468888899999988 5555655543
Q ss_pred CccCCeeeEEEee--------------cccCChhhhHHHHhhC--------cCCCCCCchhHhhhhhhh
Q 010422 85 VELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--------PYLSRYSAIIVDEAHERT 131 (511)
Q Consensus 85 ~~~~~~vg~~~~~--------------~~~~~~~~~i~~~l~~--------~~l~~~~~iIiDE~H~r~ 131 (511)
.. ..++..... +-.+.+...+...+.. ..+.+++++|+||+|...
T Consensus 109 ~~--~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 109 KW--YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp TT--SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred cC--ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 31 122111110 0111122333333333 346788999999999753
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.29 E-value=1.9e-12 Score=124.12 Aligned_cols=117 Identities=13% Similarity=0.013 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeee
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg 92 (511)
+.++++|.+++..+.++++.++++|||||||.++..++..... .++.+++++.|++.++.|..+++.++.... ...++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~ 189 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIK 189 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-HCSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHhcccc-cceEE
Confidence 5789999999999888888899999999999776555443322 223378899999999999999887764321 11122
Q ss_pred EEEeecccC----C----hhhhHHHHhhC--cCCCCCCchhHhhhhhhh
Q 010422 93 YSIRFDDRT----S----TSTRIKEALLD--PYLSRYSAIIVDEAHERT 131 (511)
Q Consensus 93 ~~~~~~~~~----~----~~~~i~~~l~~--~~l~~~~~iIiDE~H~r~ 131 (511)
......... . ..+....+... ..+.+++++|+||||...
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLAT 238 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCC
T ss_pred EEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCC
Confidence 111110000 0 00111122222 246788999999999644
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.28 E-value=2.2e-12 Score=120.09 Aligned_cols=109 Identities=21% Similarity=0.116 Sum_probs=71.3
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCee
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~v 91 (511)
.+.++++|.+++..+.++++++++||||+|||.++..++... +..++++.|++.++.+..+.+.+ ++.. .+
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~-~~~~---~v 161 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FGEE---YV 161 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-GCGG---GE
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHh-CCCC---eE
Confidence 456899999999999999999999999999998776666553 34577888999999888887766 4322 02
Q ss_pred eEEEeecc-----cCChhhhHHHHhhCcCCCCCCchhHhhhhhh
Q 010422 92 GYSIRFDD-----RTSTSTRIKEALLDPYLSRYSAIIVDEAHER 130 (511)
Q Consensus 92 g~~~~~~~-----~~~~~~~i~~~l~~~~l~~~~~iIiDE~H~r 130 (511)
+....... .+.+...+..... ....+++++|+||+|..
T Consensus 162 ~~~~g~~~~~~~i~v~T~~~l~~~~~-~~~~~~~llIiDEaH~l 204 (237)
T 2fz4_A 162 GEFSGRIKELKPLTVSTYDSAYVNAE-KLGNRFMLLIFDEVHHL 204 (237)
T ss_dssp EEESSSCBCCCSEEEEEHHHHHHTHH-HHTTTCSEEEEECSSCC
T ss_pred EEEeCCCCCcCCEEEEeHHHHHhhHH-HhcccCCEEEEECCccC
Confidence 22111000 0111112211111 12246899999999954
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.24 E-value=9.7e-11 Score=122.84 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=100.6
Q ss_pred ccEEEeccCC-CHHHHHhhhCCC-CeE------EeCCcccccc-EEEcC--CCC------CchHHHHHHHHHHHhhcCCC
Q 010422 192 LKLIIMSASL-DARGFSEYFGCA-KAV------HVQGRQFPVE-ILYTL--YPE------PDYLDATLITIFQVHLDEAP 254 (511)
Q Consensus 192 ~~~i~~SAT~-~~~~l~~~~~~~-~~~------~~~~~~~~~~-~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~ 254 (511)
..+|++|||+ +.+.+.+.+|-. +.. .++... +-+ ..+.. .+. .++.+.....+..+.... +
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~-~ 393 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA-K 393 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC-S
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC-C
Confidence 5899999999 656677777654 221 112221 111 11211 111 223455555555555443 7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEec--cccccCCCCC--
Q 010422 255 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT--NIAETSVTIP-- 330 (511)
Q Consensus 255 ~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT--~~~~~Gvdip-- 330 (511)
|.+|||+||.+..+.+++. .+..+..-..+++.++..+.++ +++ .-|++|| ..+..|||+|
T Consensus 394 g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d~ 458 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRNN 458 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEET
T ss_pred CCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceeccccccccc
Confidence 7999999999999888751 1344444344566555544444 233 4799998 6999999999
Q ss_pred ---CeEEEEeCCcccceeecC-----------CCCcccc---eeeecCHHHHHHhccccCCCC--CCeEEEe
Q 010422 331 ---GIKYVIDPGFVKARLYDP-----------VKGMESL---LVVPISKAQALQRSGRAGREG--PGKCFRL 383 (511)
Q Consensus 331 ---~v~~VI~~g~~~~~~yd~-----------~~~~~~~---~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l 383 (511)
..+.||-.|+.=-.. || ..|.+.. ...| -.....|-+||+=|.. .|..+.+
T Consensus 459 ~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 459 DRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp TEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred CCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 367777666532222 22 1121111 1234 5667889999999987 4554444
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.97 E-value=1.2e-05 Score=84.82 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh--hccccCCCeEEEEeCccHHHHHHHHHHHH
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF--HAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~--~~~~~~~~~~i~~~~p~~~l~~~~~~~~~ 80 (511)
.+.|++++..+..+++++++||+||||||++..++. .......+.+++++.|+..++.++.+.+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHH
Confidence 467999999999999999999999999977654432 22111234578899999999988776543
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.63 E-value=9e-05 Score=77.41 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHH
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 78 (511)
..+.+.|++++..+..++.++|+||+||||||++..++.... ..+..++++.|+..++....+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~--~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAE--SLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEecCcHHHHHHhHhh
Confidence 446789999999999999999999999999987655543221 1245678888998887766553
No 96
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.54 E-value=8.6e-05 Score=78.41 Aligned_cols=175 Identities=23% Similarity=0.309 Sum_probs=96.6
Q ss_pred cEEEeccCC-CHHHHHhhhCCC-CeEEeCCcccccc---EEEcCC-C------CCchHHHHHHHHHHHhhcCCCCcEEEE
Q 010422 193 KLIIMSASL-DARGFSEYFGCA-KAVHVQGRQFPVE---ILYTLY-P------EPDYLDATLITIFQVHLDEAPGDILVF 260 (511)
Q Consensus 193 ~~i~~SAT~-~~~~l~~~~~~~-~~~~~~~~~~~~~---~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~LVF 260 (511)
.+|++|||+ +.+.+.+.+|-. ..+.++. +++.+ +.+... + ...+.......+..+.... +|.+|||
T Consensus 377 ~~il~SaTL~p~~~~~~~lGl~~~~~~~~s-pf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lvl 454 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITGFEIPFKKIGE-IFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIVY 454 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHCCCCCEEECCC-CSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEEE
T ss_pred eEEEEccCCCcHHHHHHHhCCCceeeecCC-CCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 579999999 767777777643 2233322 22211 111111 1 1122344444455554433 7789999
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecc--ccccCCCCCC--eEEEE
Q 010422 261 LTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN--IAETSVTIPG--IKYVI 336 (511)
Q Consensus 261 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~--~~~~Gvdip~--v~~VI 336 (511)
+||....+.+++.+. . + +.. ...+++..++..+++.|+ +...|+++|. .+..|||+|+ .+.||
T Consensus 455 F~Sy~~l~~v~~~l~-~---~-----~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 455 FPSYSLMDRVENRVS-F---E-----HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp ESCHHHHHHHTSSCC-S---C-----CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEE
T ss_pred eCCHHHHHHHHHHHH-h---c-----chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEE
Confidence 999999988877664 1 1 222 455666678899999998 8889999975 9999999986 34666
Q ss_pred eCCcccce----------eecCC--CCcccceeeecCHHHHHHhccccCCCC--CCeEEEe
Q 010422 337 DPGFVKAR----------LYDPV--KGMESLLVVPISKAQALQRSGRAGREG--PGKCFRL 383 (511)
Q Consensus 337 ~~g~~~~~----------~yd~~--~~~~~~~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l 383 (511)
-.|+.=-. .++.. .++..-...| ......|-+||+=|.. .|..+.+
T Consensus 522 I~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 522 LAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp ESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 55653111 01100 1110001123 3456789999999977 5665554
No 97
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.54 E-value=0.0001 Score=77.78 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHH----HHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 13 LPIASVEKRLVE----EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 13 l~~~~~q~~~~~----~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
|.+++.|.++.. ++.+|+++++.||||+|||..+..+++..... .+.+++++.|++.++.|+.+.+...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 456777777664 56789999999999999994433333322111 2457889999999999988776543
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.43 E-value=0.00025 Score=72.27 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHhc----CC-EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRK----ND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 79 (511)
Q Consensus 15 ~~~~q~~~~~~l~~----~~-~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~ 79 (511)
+.+-|++++..+.. ++ .++|.|+.|||||+++-..+.... ..+...++++.|+..++..+.+++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~-~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALI-STGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCceEEEecCcHHHHHHHHhhh
Confidence 56788888886643 24 999999999999987754443322 222335778889988877666543
No 99
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.22 E-value=0.0012 Score=66.05 Aligned_cols=94 Identities=21% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHH
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~ 108 (511)
+.+++++||+||||||++..+.........+..++-..+.+..+......+....+..+ . .............
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~------~-~~~~~~dp~~i~~ 169 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV------Y-GEPNNQNPIEIAK 169 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE------E-CCTTCSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce------e-eccccCCHHHHHH
Confidence 35788999999999988766654333222232333444666666555554444333211 0 1011111111112
Q ss_pred HHhhCcCCCCCCchhHhhhhh
Q 010422 109 EALLDPYLSRYSAIIVDEAHE 129 (511)
Q Consensus 109 ~~l~~~~l~~~~~iIiDE~H~ 129 (511)
..+......+++++|+|++..
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCC
Confidence 223323335789999999853
No 100
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.19 E-value=0.00022 Score=64.77 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=29.7
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
..|..++++||+||||||.+...+.+.... +.+++++.|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEecc
Confidence 457789999999999999988887665433 44566666543
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.09 E-value=0.00055 Score=60.31 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=28.6
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
+|+..+++||.||||||++...+.+.... +..++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG--KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT--TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeecc
Confidence 47789999999999999987776654322 34566666653
No 102
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.06 E-value=0.00075 Score=71.85 Aligned_cols=65 Identities=25% Similarity=0.350 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHhc-CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRK-NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 15 ~~~~q~~~~~~l~~-~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
+.+.|.+++..+.. ....+|.||+|||||+.+...+..... .+.+++++.|+-.++..+.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~--~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK--QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEcCchHHHHHHHHHHHh
Confidence 56789988887654 568999999999999766655544332 245799999999999999888754
No 103
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.06 E-value=0.00018 Score=61.02 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++.+++.||+|||||+++-.+.-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999988755543
No 104
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.87 E-value=0.0011 Score=64.06 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCC-ccCCeeeEEEe
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV-ELGQRVGYSIR 96 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~-~~~~~vg~~~~ 96 (511)
..+.+...+..|++++|+|||||||||++-.++-.... ....+.+--+.. ... .....+++..+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e-------------~~~~~~~~~i~~~~g 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEE-------------IVFKHHKNYTQLFFG 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCC-------------CCCSSCSSEEEEECB
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeec-------------cccccchhEEEEEeC
Confidence 45667778889999999999999999987655433221 223344433221 001 12234554422
Q ss_pred ecccCChhhhHHHHhhCcCCCCCCchhHhhhh
Q 010422 97 FDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~l~~~~~iIiDE~H 128 (511)
...+....+......+.+.+++||.-
T Consensus 225 ------gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 225 ------GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp ------TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred ------CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 22233334444456678999999974
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.84 E-value=0.0019 Score=58.83 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=26.3
Q ss_pred HHHHH-HHhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 20 KRLVE-EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 20 ~~~~~-~l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.+++. .+.+|+.++|.||+||||||++..++...
T Consensus 13 d~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 13 DKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44443 46789999999999999999887776443
No 106
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.76 E-value=0.0021 Score=68.00 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
+.+.|.+++..+..+..++|.||+|||||+.+...+.... ...+.+++++.|+..++..+.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHH-TSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 5678999999888888999999999999977655543322 11355788999999999988887654
No 107
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.75 E-value=0.0011 Score=64.48 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 445556678999999999999999999866653
No 108
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.74 E-value=0.0028 Score=60.49 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=53.0
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 107 (511)
.++.++++||+||||||++..+........++..++-..+.+..+..+.+.+.+..+.. +.... . ......+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~------~~~~~-s-~~~~~~v 174 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGAT------VISHS-E-GADPAAV 174 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCE------EECCS-T-TCCHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCc------EEecC-C-ccCHHHH
Confidence 34678999999999998877665433222122222223355544433333333333322 11111 1 1111221
Q ss_pred -HHHhhCcCCCCCCchhHhhhhhhhhhhHHHHHHHHHH
Q 010422 108 -KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (511)
Q Consensus 108 -~~~l~~~~l~~~~~iIiDE~H~r~~~~~~ll~~l~~~ 144 (511)
...+......+++++|+|++-. ....+.++..++.+
T Consensus 175 ~~~al~~a~~~~~dvvIiDtpg~-~~~~~~l~~eL~~l 211 (306)
T 1vma_A 175 AFDAVAHALARNKDVVIIDTAGR-LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCC-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCc-hhhHHHHHHHHHHH
Confidence 1122222345789999999852 33344455555444
No 109
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.73 E-value=0.004 Score=62.21 Aligned_cols=93 Identities=22% Similarity=0.181 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhHH
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~ 108 (511)
..+++++|++|+||||.+..++........+..++-.-|.+..+..+.+.+....+..+ +. . ...........
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-----~~-~-~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-----FG-N-PQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-----EC-C-TTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-----Ee-c-CCCCCHHHHHH
Confidence 35789999999999988766654332221233334444677666555555554443221 10 0 11111111122
Q ss_pred HHhhCcCCCCCCchhHhhhh
Q 010422 109 EALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 109 ~~l~~~~l~~~~~iIiDE~H 128 (511)
..+....-.+++++|||.+-
T Consensus 173 ~al~~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAG 192 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHhCCCCEEEEECCC
Confidence 22222122358999999974
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.71 E-value=0.00098 Score=58.91 Aligned_cols=41 Identities=27% Similarity=0.288 Sum_probs=30.3
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
.+|+..+++||.||||||.+...+.+.... +.+++++.|..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~--g~kV~v~k~~~ 46 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVFKPEI 46 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEecc
Confidence 356788999999999999888777665432 45677777764
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.69 E-value=0.0019 Score=63.10 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...+..++|+|||||||||++-.++-
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45677999999999999998866543
No 112
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.62 E-value=0.00063 Score=64.73 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++.+.+...+.+|+.+.|+||+||||||++-.++-.
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4466777788899999999999999999988766543
No 113
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.57 E-value=0.0029 Score=60.09 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
++++++++||+|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999998887665443
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.55 E-value=0.0054 Score=59.15 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..+++.||+|+|||+++-.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999988765544
No 115
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0037 Score=59.79 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+.+++|.||+|+|||+++-..+.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999777666543
No 116
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0027 Score=68.93 Aligned_cols=66 Identities=24% Similarity=0.354 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
+.+.|.+++..+..+..++|.||+|||||+.+...+..... ..+.+++++.|+..++..+.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~-~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSK-IHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh-CCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 46889999999888889999999999999766554432211 1245788999999999999888765
No 117
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.51 E-value=0.0038 Score=67.71 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~ 81 (511)
+.+.|.+++..+..+...+|.||+|||||+.+...+.... ...+.+++++.|+..++..+.+++.+
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHH-TTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 5678999999988888999999999999977655543322 21345788999999999888887654
No 118
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.47 E-value=0.0045 Score=65.03 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=55.6
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
.+.+.++|+.++..+...+..++.++-|+|||+++..+++......++..++++.|+...+..+...+....
T Consensus 161 ~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 456789999999988667889999999999998776555444444455678999999998888777665544
No 119
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.47 E-value=0.003 Score=56.40 Aligned_cols=41 Identities=24% Similarity=0.184 Sum_probs=30.4
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~ 70 (511)
+|+..+++||-||||||.+...+.+.... +.+++++.|...
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccC
Confidence 46778899999999999988887766443 556777777654
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.40 E-value=0.0025 Score=57.19 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..++..+.+|+.+.|.||+||||||++-.+.-
T Consensus 12 ~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 12 QKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 566888899999999999999999999866653
No 121
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.40 E-value=0.0058 Score=58.85 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++..+.++||+||||||++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999988766543
No 122
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0073 Score=57.49 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+|+.+.++||+||||||++..+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999988766543
No 123
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.28 E-value=0.0013 Score=56.25 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
....+...+.+|+.+.+.||+||||||++-.+.-.
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44455555689999999999999999988666543
No 124
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.28 E-value=5.4e-05 Score=70.54 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=34.4
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|+++++.+.++.|+-.++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34455555555554333344455567899999999999999999986654
No 125
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.16 E-value=0.014 Score=54.92 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=20.0
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.....+++.||+|+|||+++-.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3567899999999999988755543
No 126
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.15 E-value=0.0022 Score=59.85 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..+++. +.+|+.++|+|||||||||++-.++-
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 3555555 78999999999999999998866553
No 127
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.14 E-value=7.3e-05 Score=69.51 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=32.8
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.+.+..|+-.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344444444443333344455678999999999999999999876654
No 128
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.10 E-value=0.011 Score=57.46 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+|+.+.++||+||||||++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4678999999999999988766543
No 129
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.07 E-value=0.0014 Score=59.86 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..|..+...+.+|+.+.|+||+||||||++-.+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4677788788999999999999999999986665
No 130
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.07 E-value=0.0026 Score=57.63 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+...+.+|+.+.|+||+||||||++-.+.-
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 456777889999999999999999999876654
No 131
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.07 E-value=0.0001 Score=67.88 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=33.0
Q ss_pred hhhHHHhhccCC--CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLP--IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~--~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.+..|+ -.++.+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 344445555554 123344455567899999999999999999986654
No 132
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.06 E-value=0.0034 Score=61.51 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+...+..|+.++|+|||||||||++..++-.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 667778899999999999999999998766543
No 133
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.04 E-value=0.0036 Score=62.33 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=49.6
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 107 (511)
..+..+|.|+.|||||+.+...+.. ...+++.|++.++....+++.+. +.. .........+
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT~~aa~~l~~kl~~~-~~~-----------~~~~~~V~T~ 220 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILVPGRQAAEMIRRRANAS-GII-----------VATKDNVRTV 220 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEESCHHHHHHHHHHHTTT-SCC-----------CCCTTTEEEH
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCCHHHHHHHHHHhhhc-Ccc-----------ccccceEEEe
Confidence 3457899999999999888555421 23577889999987777665321 110 0011112223
Q ss_pred HHHhhCcCC---CCCCchhHhhhhh
Q 010422 108 KEALLDPYL---SRYSAIIVDEAHE 129 (511)
Q Consensus 108 ~~~l~~~~l---~~~~~iIiDE~H~ 129 (511)
..++.++.- ...+.+||||+-.
T Consensus 221 dsfL~~~~~~~~~~~d~liiDE~sm 245 (446)
T 3vkw_A 221 DSFLMNYGKGARCQFKRLFIDEGLM 245 (446)
T ss_dssp HHHHHTTTSSCCCCCSEEEEETGGG
T ss_pred HHhhcCCCCCCCCcCCEEEEeCccc
Confidence 334333322 2489999999863
No 134
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.02 E-value=7.3e-05 Score=68.28 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=32.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.|+-.+..+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHT
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34444444444333334455567899999999999999999986654
No 135
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.01 E-value=9.1e-05 Score=69.45 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=34.1
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.++-.++.+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 12 l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHT
T ss_pred EEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 44445555555444455556667899999999999999999986664
No 136
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.99 E-value=0.0052 Score=62.06 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.|.++.++||+||||||++-.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467899999999999998876654
No 137
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.98 E-value=9.3e-05 Score=69.11 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=32.8
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.|+-.++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 33444444444333444555667899999999999999999986654
No 138
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.97 E-value=0.00012 Score=71.97 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=36.8
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|.++++.+.++.|+-....+++...+.+|+.+.+.||+||||||++-.+.
T Consensus 1 M~~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHH
Confidence 44455566666666554455566677899999999999999999987665
No 139
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.95 E-value=0.0037 Score=57.78 Aligned_cols=49 Identities=24% Similarity=0.211 Sum_probs=30.4
Q ss_pred hhhHHHh-hccC-CCHHHHHHHHHHHhc---CCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQ-RKSL-PIASVEKRLVEEVRK---NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~-~~~l-~~~~~q~~~~~~l~~---~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+. .+.| .-....+++...+.+ |++++++|++||||||++-.+.-
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3556666 6666 445677788888888 99999999999999998866554
No 140
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.91 E-value=0.0083 Score=57.61 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+++.++++||+|+||||++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999887666543
No 141
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.91 E-value=0.0021 Score=55.70 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.6
Q ss_pred HhcCCEEEEEcCCCCchhchHHH
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQ 48 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~ 48 (511)
+.+|+.++++||+||||||++-.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 56789999999999999999865
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.90 E-value=0.0039 Score=55.82 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=21.0
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+|+.+.|.||+||||||++-.+.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999999986664
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.90 E-value=0.0063 Score=53.02 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH---------hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 16 ASVEKRLVEEV---------RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 16 ~~~q~~~~~~l---------~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+.|++++..+ .+|+.+++.||+||||||++-.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555544 35889999999999999887665543
No 144
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.88 E-value=0.0042 Score=54.52 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=29.6
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCcc
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 68 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~ 68 (511)
.++..++.||.||||||.+...+.+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 57889999999999998888887766544 3456666665
No 145
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.88 E-value=0.022 Score=53.94 Aligned_cols=94 Identities=23% Similarity=0.233 Sum_probs=45.2
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhCCccCCeeeEEEeecccCChhhhH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 107 (511)
+++.+.++|++|+||||++..+........++..++-..+.+..+..+...+....+..+ ..... ........
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~------~~~~~-~~~p~~l~ 169 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV------LEVMD-GESPESIR 169 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE------EECCT-TCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE------EEcCC-CCCHHHHH
Confidence 456888999999999988766654333222222222333455444333223333333211 11101 11111111
Q ss_pred HHHhhCcCCCCCCchhHhhhh
Q 010422 108 KEALLDPYLSRYSAIIVDEAH 128 (511)
Q Consensus 108 ~~~l~~~~l~~~~~iIiDE~H 128 (511)
...+......+++++|+||.-
T Consensus 170 ~~~l~~~~~~~~D~viiDtpp 190 (295)
T 1ls1_A 170 RRVEEKARLEARDLILVDTAG 190 (295)
T ss_dssp HHHHHHHHHHTCCEEEEECCC
T ss_pred HHHHHHHHhCCCCEEEEeCCC
Confidence 222222122568999999973
No 146
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.86 E-value=0.0053 Score=62.97 Aligned_cols=34 Identities=38% Similarity=0.415 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.....+...+..|++++|+|||||||||++-.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455677778899999999999999999886554
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.80 E-value=0.0045 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+|+.+.++||+||||||++-.+.-
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHh
Confidence 45789999999999999998866543
No 148
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.77 E-value=0.0082 Score=54.13 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=31.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
.|+..+++||-||||||.+...+.+.... +.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecC
Confidence 58889999999999999888887766543 55677777754
No 149
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.02 Score=59.08 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCchhchHHHHHhhc
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+.++++||+|+|||+++-.+....
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999998876665443
No 150
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.72 E-value=0.0054 Score=53.56 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=21.1
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..|+.++|+||+||||||++-.+.-
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3678999999999999999876654
No 151
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.72 E-value=0.00021 Score=69.82 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=35.6
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|.++++.+.++.|.-.+..+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 1 m~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CCCEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHh
Confidence 33445555566665433445555667899999999999999999987665
No 152
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.69 E-value=0.02 Score=57.62 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...+++.||+|+|||+++-.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999988755543
No 153
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.66 E-value=0.01 Score=63.03 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc--CCCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
.+.+.|++++. ..+..++|.|+.|||||+.+..-+...... .+...++++.+++.++..+.+++.+..+.
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 46778998886 346678999999999997654433222111 12346888889999999999988877553
No 154
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.65 E-value=0.00018 Score=70.19 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=33.7
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.++.|+-....+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHH
Confidence 344445555554333344555567899999999999999999987665
No 155
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.65 E-value=0.0078 Score=56.37 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+++.||+|+|||+++-.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999887555443
No 156
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.65 E-value=0.00017 Score=70.28 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=36.0
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.+.++.|+-.+..+++...+.+|+.+.+.||+||||||++-.+.-
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 3455556666655444555666778999999999999999999866653
No 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.64 E-value=0.022 Score=56.10 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcCCCCC---CCHHHHH-HHccCCCCHHHHH
Q 010422 428 KPSRASIIKSLEQLFLLGALTDDCK---LSDPVGH-QMARLPLDPIYSK 472 (511)
Q Consensus 428 ~p~~~~l~~al~~L~~~g~l~~~~~---~T~~lG~-~~~~~~~~p~~~~ 472 (511)
+.....+...++.|...|+|..... -.. .|+ ...++.+++..-.
T Consensus 329 ~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~-~g~~~~~~l~~~~~~v~ 376 (389)
T 1fnn_A 329 PRVHSQLWSYLNDLREKGIVETRQNKRGEGV-RGRTTLISIGTEPLDTL 376 (389)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEEC----------CEEEECCSSCHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCeEEeeeccCCCC-CCceeEEEeCCCHHHHH
Confidence 4467889999999999999965321 112 343 2456777776543
No 158
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.59 E-value=0.00021 Score=70.06 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=34.4
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.++.|+-....+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHH
Confidence 344555555554433444555667899999999999999999987665
No 159
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.53 E-value=0.089 Score=50.70 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=17.5
Q ss_pred CEEEEEcCCCCchhchHHHHH
Q 010422 30 DILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l 50 (511)
.++++.||+|+|||+++-.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 479999999999998875553
No 160
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.50 E-value=0.0058 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=19.3
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..|+.++|+||+||||||++-.+.-
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3678899999999999999876653
No 161
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=95.48 E-value=0.071 Score=50.59 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=72.4
Q ss_pred HHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEec
Q 010422 241 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT 320 (511)
Q Consensus 241 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT 320 (511)
.+..++..... .+.++|||+...+..+-+...+... ++....+.|.....+++ ..+....+.+.|
T Consensus 113 ~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~---------~~~y~RlDG~~~~~~~k-----~~~~~~~i~Llt 177 (328)
T 3hgt_A 113 VLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGN---------KVHIKRYDGHSIKSAAA-----ANDFSCTVHLFS 177 (328)
T ss_dssp HHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTS---------SCEEEESSSCCC------------CCSEEEEEEE
T ss_pred HHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcC---------CCceEeCCCCchhhhhh-----cccCCceEEEEE
Confidence 33444444433 3778999999999988888888654 88888898885443322 124556666667
Q ss_pred cccccCCC-----CCCeEEEEeCCcccceeecCCCCcccceeeecCHHHHHHhccccCCCC-----CCeEEEecChhhHh
Q 010422 321 NIAETSVT-----IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-----PGKCFRLYPENEFD 390 (511)
Q Consensus 321 ~~~~~Gvd-----ip~v~~VI~~g~~~~~~yd~~~~~~~~~~~p~s~~~~~Qr~GRaGR~~-----~G~~~~l~~~~~~~ 390 (511)
....-|+| .-..+.||- ||+..+ |.+ ..+|..-|+.|.+ +=.+|+|++....+
T Consensus 178 sag~~gin~~~~nl~~aD~VI~--------~DsdwN-------p~~--d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLIC--------LDTTVD-------TSQ--KDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEE--------CSTTCC-------TTS--HHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCCCCcCcccccCCCCCEEEE--------ECCCCC-------CCC--hHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 76666676 456677776 887654 222 2455444444442 45799999776554
Q ss_pred h
Q 010422 391 K 391 (511)
Q Consensus 391 ~ 391 (511)
.
T Consensus 241 h 241 (328)
T 3hgt_A 241 H 241 (328)
T ss_dssp H
T ss_pred H
Confidence 4
No 162
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.48 E-value=0.0051 Score=56.32 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=24.6
Q ss_pred HHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 344557799999999999999999986554
No 163
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.47 E-value=0.00022 Score=70.12 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=33.2
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.|+-....+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHH
Confidence 44445555554333344455567899999999999999999987665
No 164
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.45 E-value=0.017 Score=56.79 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcCCCCC-CCHHHHHH-HccCCCCHHHHHHHHH
Q 010422 427 EKPSRASIIKSLEQLFLLGALTDDCK-LSDPVGHQ-MARLPLDPIYSKALIV 476 (511)
Q Consensus 427 ~~p~~~~l~~al~~L~~~g~l~~~~~-~T~~lG~~-~~~~~~~p~~~~~~~~ 476 (511)
+|.....+..+++.|...|.++.... -.. -|+. ...+.++|..-...+.
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~-~g~~~~~~l~~~~~~i~~~l~ 378 (387)
T 2v1u_A 328 EHVTLRRVSGIISELDMLGIVKSRVVSRGR-YGKTREVSLDADRLAVENALS 378 (387)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECGG-GCEEEEEEECSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEeecCCC-CCceeEEEecCCHHHHHHHHh
Confidence 45567888999999999999964211 001 2221 3446677766554443
No 165
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.43 E-value=0.0052 Score=54.07 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=22.3
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+|+.++++||+||||||++-.+.-
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 466889999999999999999866644
No 166
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.42 E-value=0.03 Score=55.40 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
...+++.||+|+|||+++-.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999877555433
No 167
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.41 E-value=0.011 Score=54.38 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=23.3
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.+|+.++|.||+||||||++-.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999999987666
No 168
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.40 E-value=0.00018 Score=70.12 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=34.2
Q ss_pred CChhhHHHhhccCCCHH--HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 1 MPRQKILQQRKSLPIAS--VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~--~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
|.++++.+.++.|+-.. ..+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 1 M~~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CCCEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHH
T ss_pred CcEEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 33344455555554332 334455567899999999999999999987665
No 169
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.34 E-value=0.0081 Score=53.49 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=21.5
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+|..++++||+||||||++-.+.-
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999866543
No 170
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.33 E-value=0.025 Score=59.26 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhc--CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHH
Q 010422 15 IASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (511)
Q Consensus 15 ~~~~q~~~~~~l~~--~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~ 78 (511)
++.-|++++..+.+ ....+++|+-|.|||+++-.++.... + .++++.|+...+....+.
T Consensus 176 ~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~-~~~vtAP~~~a~~~l~~~ 236 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----G-RAIVTAPAKASTDVLAQF 236 (671)
T ss_dssp CCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----S-CEEEECSSCCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----h-CcEEECCCHHHHHHHHHH
Confidence 45678899988876 55789999999999988877776553 1 358889998877655543
No 171
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.31 E-value=0.0091 Score=53.97 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=21.2
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...+|+.++|+||+||||||++-.+.-
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999999876553
No 172
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.30 E-value=0.0092 Score=52.98 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+.+...+.+++.++++||+||||||++-.+...
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34566677788999999999999999988665533
No 173
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.28 E-value=0.011 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++..+.|+||+||||||++-.+.-
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678899999999999998865543
No 174
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.0074 Score=61.00 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=32.4
Q ss_pred hhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+..+.|+ .+...+..|+.+.|.||+||||||++-.+.
T Consensus 118 mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 118 MKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp HHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHH
T ss_pred hhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHh
Confidence 455666555442 577778899999999999999999886654
No 175
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.23 E-value=0.0067 Score=56.87 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=34.8
Q ss_pred hhhHHHhhccCCCH-HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 3 RQKILQQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 3 ~~~~~~~~~~l~~~-~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++++.+.++.|+-. ...+.+...+.+|+.+.|+||+||||||++-.+.
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 35555666666532 2445556667899999999999999999986654
No 176
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.21 E-value=0.01 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=21.7
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+|+.++++||+||||||++-.++-.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999998766543
No 177
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.21 E-value=0.035 Score=54.53 Aligned_cols=48 Identities=13% Similarity=0.013 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcCCCCCC-CHHHHH-HHccCCCCHHHHHHHH
Q 010422 427 EKPSRASIIKSLEQLFLLGALTDDCKL-SDPVGH-QMARLPLDPIYSKALI 475 (511)
Q Consensus 427 ~~p~~~~l~~al~~L~~~g~l~~~~~~-T~~lG~-~~~~~~~~p~~~~~~~ 475 (511)
++.....+..+++.|...|+++....- .. -|+ .+..+.++|..-...+
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~-~g~~~~~~l~~~~~~v~~~l 365 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIRIINRGR-AGGVKKYALVEDKEKVLRAL 365 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEECCTT-TTCCEEEEEESSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEeccCCC-CCceEEEEecCCHHHHHHHH
Confidence 355778899999999999999643210 01 232 2455667776544433
No 178
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.18 E-value=0.0083 Score=56.99 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcc
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~ 54 (511)
++...++...+..|+.++|.||+||||||++-+++....
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345667777788999999999999999999877765543
No 179
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.15 E-value=0.0038 Score=60.58 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+.+...+.++..+.++||+||||||++..+.-
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344444556888999999999999999877653
No 180
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.15 E-value=0.008 Score=59.90 Aligned_cols=26 Identities=42% Similarity=0.598 Sum_probs=21.2
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++..++|+|||||||||++-.++-.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 46778999999999999988665543
No 181
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.12 E-value=0.015 Score=55.56 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=20.7
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHH
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+|..+.|.||+||||||++-.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHH
Confidence 4567899999999999999985543
No 182
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.09 E-value=0.007 Score=54.44 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=29.5
Q ss_pred HhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 8 ~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+..|+- ++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 15 ~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 15 DLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33444433 3334444567799999999999999999986654
No 183
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.09 E-value=0.0096 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.++++||+||||||++-.+.-
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46789999999999999876653
No 184
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.07 E-value=0.0082 Score=54.68 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=30.7
Q ss_pred HHHhhccCC--CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 6 ILQQRKSLP--IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 6 ~~~~~~~l~--~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+.+..++ -.++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 334444443 122334455567899999999999999999986654
No 185
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.04 E-value=0.024 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..++|.||+|+|||+++-.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999888665543
No 186
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.02 E-value=0.0092 Score=54.95 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
...+.+...+.+|..+.|.||+||||||++-.+.
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~ 46 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIM 46 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3556777788899999999999999999986554
No 187
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.01 E-value=0.013 Score=51.82 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=21.7
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+|+.++|+||+||||||++-.++-.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 47889999999999999988766543
No 188
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.00 E-value=0.0087 Score=55.21 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444567799999999999999999986654
No 189
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.99 E-value=0.00055 Score=66.66 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=32.8
Q ss_pred hHHHhhccC-CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 5 KILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 5 ~~~~~~~~l-~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+.++.| .-....+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 16 ~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 16 EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 344455555 3333344555567899999999999999999987665
No 190
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.98 E-value=0.0091 Score=55.62 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=32.3
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.|+-.++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34444444444333344455567899999999999999999986654
No 191
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.97 E-value=0.0089 Score=54.89 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=31.7
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.|+-.++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 7 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33444444444333334445567799999999999999999986654
No 192
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.94 E-value=0.012 Score=57.01 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=30.5
Q ss_pred hhccCCCHHHHHHHHHHHhcC-------CEEEEEcCCCCchhchHHHHHhh
Q 010422 9 QRKSLPIASVEKRLVEEVRKN-------DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 9 ~~~~l~~~~~q~~~~~~l~~~-------~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+...+.-....+.+...+..+ +++++.||+|+||||++-.+.-.
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344444455666666666654 78999999999999988655443
No 193
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.94 E-value=0.011 Score=55.34 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 6 ~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+.++.|+-.++.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 23 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 23 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3344444432223344455678999999999999999999876654
No 194
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.94 E-value=0.0095 Score=55.44 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=32.0
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 4 ~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.+.++.|+-.++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 33444444443333334455567899999999999999999986654
No 195
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.86 E-value=0.01 Score=55.23 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+...+.+|+.+.|.||+||||||++-.+.-
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 344455678999999999999999999866643
No 196
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.86 E-value=0.01 Score=54.78 Aligned_cols=28 Identities=43% Similarity=0.682 Sum_probs=23.4
Q ss_pred HHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 23 VEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
...+.+|+.+.|.||+||||||++-.+.
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3456789999999999999999986654
No 197
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.81 E-value=0.011 Score=55.70 Aligned_cols=44 Identities=27% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 7 ~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.++.|+-.++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 25 ~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 25 DQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 33444443333334455567899999999999999999986654
No 198
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.81 E-value=0.0091 Score=54.94 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444567799999999999999999986654
No 199
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.76 E-value=0.0097 Score=53.93 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.5
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..|+.+.|.||+||||||++-.++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999999877764
No 200
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.75 E-value=0.011 Score=54.72 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=30.9
Q ss_pred hHHHhhccCC-CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 5 KILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 5 ~~~~~~~~l~-~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+.+..|+ -.++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 6 ~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 6 SVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHT
T ss_pred EEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3334444443 222334444567899999999999999999986654
No 201
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.75 E-value=0.011 Score=55.30 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=31.6
Q ss_pred hHHHhhccCCC---HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 5 KILQQRKSLPI---ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 5 ~~~~~~~~l~~---~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++.+.+..|+- .++.+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 18 ~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 18 KFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 33444444432 22334455567899999999999999999986654
No 202
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.74 E-value=0.011 Score=58.11 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..|+.++|+|||||||||++-.++-
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 56888999999999999998876654
No 203
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.73 E-value=0.017 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=20.6
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+|+.++|+||+||||||++-.+.-
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999998866543
No 204
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.72 E-value=0.013 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=19.3
Q ss_pred hcCCEEEEEcCCCCchhchHHHH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~ 49 (511)
.+|..+.|.||+||||||++-.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPL 42 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45779999999999999988544
No 205
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.70 E-value=0.011 Score=52.66 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=28.8
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~ 70 (511)
..|...+++||-||||||.+...+.+.... +.+++++.|...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEeccC
Confidence 467889999999999999776666554333 445677777553
No 206
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.67 E-value=0.022 Score=51.93 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=24.6
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
-+..|+.++|.||+||||||++..++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46788999999999999999988777643
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.67 E-value=0.025 Score=47.25 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=21.1
Q ss_pred HHHHHhcCCEEEEEcCCCCchhchHHHH
Q 010422 22 LVEEVRKNDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKTt~~~~~ 49 (511)
+-.....+.++++.||+|+|||+++-.+
T Consensus 17 ~~~~a~~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 17 LQQLSETDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp HHHHTTCCSCEEEESSTTSSHHHHHHHH
T ss_pred HHHHhCCCCCEEEECCCCCCHHHHHHHH
Confidence 3333457789999999999999776444
No 208
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.66 E-value=0.012 Score=54.91 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3444567899999999999999999986654
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.59 E-value=0.02 Score=47.77 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchH
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQL 46 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~ 46 (511)
..+.+......+.++++.||+|+|||+++
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHH
Confidence 33444444567788999999999999776
No 210
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.56 E-value=0.035 Score=50.68 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=24.5
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhcc
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~~ 54 (511)
-+..|+.++|.||+||||||++.+++....
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999998777765543
No 211
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.53 E-value=0.011 Score=56.35 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+...+..|+.+.|+||+||||||++-.+.
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence 3444557789999999999999999986554
No 212
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.52 E-value=0.037 Score=52.46 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
+..++++|++|+||||++..+.........+..++-..+.+..+..+.+.+....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~ 153 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIG 153 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCC
Confidence 44788899999999988776654433222222333334555444443333343333
No 213
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.50 E-value=0.057 Score=51.62 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCC------EEEEEcCCCCchhchHHHHH
Q 010422 18 VEKRLVEEVRKND------ILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 18 ~q~~~~~~l~~~~------~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+...+.++. .+.|.||+||||||++-.+.
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3445555666665 78999999999999885543
No 214
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.40 E-value=0.021 Score=51.18 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHHHHH-HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 19 EKRLVE-EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 19 q~~~~~-~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+++. .+..|+.+++.||+||||||++.+++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344443 467899999999999999999887776
No 215
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.38 E-value=0.031 Score=59.63 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc--CCCeEEEEeCccHHHHHHHHHHHHHHhCC
Q 010422 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~--~~~~~i~~~~p~~~l~~~~~~~~~~~~~~ 85 (511)
+.+-|++++.. .+..++|.|+.|||||+.+..-+...... .+...++++..++.++.++.+++.+..+.
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 56778888865 36789999999999996654332211111 12346888888999999999988876543
No 216
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.36 E-value=0.018 Score=51.53 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCCchhchHHHHH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.++..+.|+||+||||||++-.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 467789999999999999885554
No 217
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.33 E-value=0.022 Score=49.52 Aligned_cols=20 Identities=45% Similarity=0.722 Sum_probs=17.1
Q ss_pred EEEEEcCCCCchhchHHHHH
Q 010422 31 ILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l 50 (511)
.+.++||+||||||++-.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999886664
No 218
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.33 E-value=0.037 Score=63.59 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+++...+.+|+.+.|+||+||||||++-.++-
T Consensus 433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred eeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 3455566678999999999999999999866654
No 219
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.29 E-value=0.032 Score=53.06 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=20.9
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+++.+.++||+||||||++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4779999999999999988766543
No 220
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.26 E-value=0.016 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.661 Sum_probs=22.0
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.+|+.+.|.||+||||||++-.+.
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 35688999999999999999986654
No 221
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.24 E-value=0.069 Score=51.83 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=17.3
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++.||+|+||||++-.+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999988765544
No 222
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.24 E-value=0.02 Score=52.48 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=25.0
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhccc
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~~~ 55 (511)
+..|..++|.|++|+|||+++.+++.+...
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~ 56 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999988887765433
No 223
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.23 E-value=0.16 Score=50.40 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
++.++++|++||||||++..+.........+..++-.-+.+..+..+.+.+....+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~g 153 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVG 153 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCC
Confidence 45788899999999988766654433222233333344556555443333343333
No 224
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.22 E-value=0.027 Score=49.95 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=23.3
Q ss_pred HHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.-....+|..++++||+||||||++-.+.-
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 333456788999999999999998765543
No 225
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.21 E-value=0.0057 Score=64.13 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHhhccCCC--HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 7 LQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 7 ~~~~~~l~~--~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+....|+. .+..+++...+.+|+.+.++||+||||||++-.+.-
T Consensus 345 ~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 345 KDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 334444542 345667777788999999999999999999866553
No 226
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.09 E-value=0.059 Score=46.70 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHHh
Q 010422 16 ASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 16 ~~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..+++...+..+ ..++++||+|+|||+++-.+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 44555666666543 6899999999999988755543
No 227
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.05 E-value=0.025 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
|+.+.++||+||||||++-.+.-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 567899999999999988766543
No 228
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.04 E-value=0.021 Score=52.26 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=22.2
Q ss_pred HHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 23 VEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
...+.+ +.+.|.||+||||||++-.+.
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHh
Confidence 334567 899999999999999987665
No 229
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.03 E-value=0.025 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=19.6
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..++++||+||||||++-.+.-
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999998866544
No 230
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.00 E-value=0.02 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhchHHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l 50 (511)
|+.++++||+||||||++-.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 4578999999999999987665
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.00 E-value=0.026 Score=50.25 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=22.3
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
....+..++++||+||||||++-.+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457889999999999999988766543
No 232
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.98 E-value=0.023 Score=56.48 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=29.4
Q ss_pred ccCCCHHHHHHHHHHHhcCCE--EEEEcCCCCchhchHHHHHh
Q 010422 11 KSLPIASVEKRLVEEVRKNDI--LIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 11 ~~l~~~~~q~~~~~~l~~~~~--~~i~apTGsGKTt~~~~~l~ 51 (511)
..|+..+ .+.+...+..|.. +.|+||+||||||++-.+.-
T Consensus 23 ~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 23 VGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp C-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred EEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 3444444 6678888999999 99999999999999876653
No 233
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.96 E-value=0.025 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+++.++++||+||||||++-.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999886554
No 234
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.94 E-value=0.052 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+++.||+|+|||+++-.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999987755443
No 235
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.93 E-value=0.052 Score=58.39 Aligned_cols=69 Identities=22% Similarity=0.130 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc--cCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~--~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.+.+.|++++.. .+..++|.|+.|||||+.+-.-+..... ..+...++++..++.++.++.+++.+..+
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 467789988875 3567889999999999655433222111 11224588888999999998888876654
No 236
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.88 E-value=0.022 Score=52.99 Aligned_cols=29 Identities=41% Similarity=0.494 Sum_probs=23.4
Q ss_pred HHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+...+. |+.+.|.||+||||||++-.+.-
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 344567 99999999999999999866543
No 237
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.86 E-value=0.05 Score=53.98 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCC--------------------EEEEEcCCCCchhchHHHHHh
Q 010422 17 SVEKRLVEEVRKND--------------------ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 17 ~~q~~~~~~l~~~~--------------------~~~i~apTGsGKTt~~~~~l~ 51 (511)
...+.+...+.+|+ .+.+.||+||||||++-.+.-
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 45667777788888 999999999999999876653
No 238
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.78 E-value=0.13 Score=49.23 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCC---EEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l 50 (511)
...+.+...+..++ .+++.||+|+|||+++-.+.
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHH
Confidence 34445555565554 46778889999998875554
No 239
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.77 E-value=0.021 Score=55.30 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.+...+.+|+.+.+.||+||||||++-.+.
T Consensus 16 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEEEEEECTTCEEEEECCCTHHHHHHHHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCccHHHHHHHHH
Confidence 33444557799999999999999999987665
No 240
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.76 E-value=0.062 Score=61.41 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc----CCCeEEEEeCccHHHHHHHHHHHHHHh
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRVAEES 83 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~----~~~~~i~~~~p~~~l~~~~~~~~~~~~ 83 (511)
....++-|++++.. .+++++|.|..|||||+.+..-+...... .....++++.+++.++..+.+++....
T Consensus 8 ~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 34567889988865 37799999999999997754433322221 123468999999999999988876643
No 241
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.69 E-value=0.017 Score=59.59 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=30.8
Q ss_pred CHHHHHHHHH-HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 15 IASVEKRLVE-EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 15 ~~~~q~~~~~-~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+..+++.. .+.+|+.++|+||+||||||++-++++
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll 61 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 61 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3456777877 888999999999999999999888643
No 242
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.67 E-value=0.013 Score=57.00 Aligned_cols=47 Identities=15% Similarity=-0.008 Sum_probs=33.0
Q ss_pred hHHHhhccCC-CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 5 KILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 5 ~~~~~~~~l~-~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..+..+.|. -....+.+ ..+.+|+.+.|.||+|+||||++-.++-.
T Consensus 47 ~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 47 LRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3344445554 33455555 67889999999999999999997655543
No 243
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.67 E-value=0.017 Score=58.01 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=34.9
Q ss_pred hhHHHhhccCC-CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 4 QKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 4 ~~~~~~~~~l~-~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++..+.+..|+ ..+..+.+ ..+.+|+.+.|.||+||||||++-.++-.
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34444555565 34566666 77889999999999999999997655543
No 244
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.66 E-value=0.083 Score=47.68 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCC---EEEEEcCCCCchhchHHHHHh
Q 010422 16 ASVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~ 51 (511)
....+.+...+..++ .+++.||+|+|||+++-.+..
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 29 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345556666666665 799999999999988766553
No 245
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.61 E-value=0.027 Score=55.44 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=31.5
Q ss_pred HHHhhccCC--CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 6 ILQQRKSLP--IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 6 ~~~~~~~l~--~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+.++.|+ -....+.+...+.+|+.+.|.||+||||||++-.+.
T Consensus 22 ~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 22 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence 334444452 223344555567899999999999999999987665
No 246
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.54 E-value=0.064 Score=46.28 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhc--CCEEEEEcCCCCchhchHHHHHhh
Q 010422 16 ASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 16 ~~~q~~~~~~l~~--~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+..+.+...+.. ..++++.||+|+|||+++-.+...
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3344555555544 568999999999999887655543
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.43 E-value=0.037 Score=48.65 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++.++|+||||||||+++..++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999988766553
No 248
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.40 E-value=0.036 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=18.9
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+++.++|+||||||||++...+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999988755543
No 249
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.40 E-value=0.19 Score=49.17 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=54.0
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHH
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 82 (511)
.+.+.++|+.++..+...+.+++..+-+.|||+++..+++......++..++++.|++..+..+.+.+...
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 46789999999998866788999999999999876665554333345667899999998887776655443
No 250
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.36 E-value=0.0076 Score=53.77 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=24.2
Q ss_pred CChhhHHHhhccCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHH
Q 010422 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQ 48 (511)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~ 48 (511)
|.++++.+.+..++. ..... ..+.++..++++|++|+||||++-.
T Consensus 1 m~~l~~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~ 45 (210)
T 1pui_A 1 MTNLNYQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNT 45 (210)
T ss_dssp ----------CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTT
T ss_pred Ccchhhhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHH
Confidence 334566666665542 11222 3466788899999999999998833
No 251
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.31 E-value=0.045 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++..++|+||+||||||++-.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999866553
No 252
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.30 E-value=0.032 Score=52.33 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.8
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..|+.++|.||+||||||++.+++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 477899999999999999998877765
No 253
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.28 E-value=0.078 Score=51.24 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHhcCCE--EEEEcCCCCchhchHHHHHh
Q 010422 13 LPIASVEKRLVEEVRKNDI--LIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~--~~i~apTGsGKTt~~~~~l~ 51 (511)
+.-....+.+...+.+|+. +++.||+|+||||++-.+..
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3334555666677788876 99999999999988755543
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.23 E-value=0.047 Score=47.47 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++++||+||||||++..+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999988665543
No 255
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.19 E-value=0.049 Score=47.52 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++..++++|++||||||++-.+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999998866544
No 256
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.17 E-value=0.31 Score=52.51 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=66.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecc-ccccCCCCCCe
Q 010422 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-IAETSVTIPGI 332 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-~~~~Gvdip~v 332 (511)
+.+++|.+||+.-+.+.++.+.+.+... ++.+..+||+++..+|....+.+.+|..+|+|+|. .+...+++.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~-----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKF-----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCS-----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 6789999999999999999998876432 57789999999999999999888999999999996 44456778888
Q ss_pred EEEE
Q 010422 333 KYVI 336 (511)
Q Consensus 333 ~~VI 336 (511)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8776
No 257
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.16 E-value=0.038 Score=51.05 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.3
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++|+|||||||||++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999998865543
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.15 E-value=0.046 Score=46.83 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCchhchHHHH
Q 010422 30 DILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~ 49 (511)
..++++||+||||||++-.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999988766
No 259
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.13 E-value=0.042 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..++|+||||||||+++..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45788999999999988755543
No 260
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.11 E-value=0.086 Score=54.34 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=24.5
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.+.+|..++|.||+||||||++-+++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999988776543
No 261
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.11 E-value=0.055 Score=52.99 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+...+..++.+++.||+||||||++-.+.-
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33444567889999999999999998866653
No 262
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.07 E-value=0.047 Score=45.87 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCCchhchHHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l 50 (511)
....+|+||||||||+++..+.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3478999999999998876543
No 263
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.03 E-value=0.038 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.|..++++|++||||||++-.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999866653
No 264
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.02 E-value=0.052 Score=47.09 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+|+|||||||||++..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999998866543
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.02 E-value=0.054 Score=46.70 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..++++|+.||||||++-.+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999988655443
No 266
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.01 E-value=0.045 Score=49.14 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=23.4
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.+.+.++++|.||+||||+|++..+.-..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45667789999999999999987766544
No 267
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.95 E-value=0.037 Score=49.22 Aligned_cols=27 Identities=37% Similarity=0.288 Sum_probs=21.8
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+..+..+.|+|++||||||++..+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345667889999999999999886554
No 268
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.93 E-value=0.16 Score=53.41 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=32.5
Q ss_pred cCCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 12 ~l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+......+.+...+..++.+++.||+||||||++-.+..
T Consensus 43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3445567778888899999999999999999988766554
No 269
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.89 E-value=0.057 Score=47.45 Aligned_cols=29 Identities=41% Similarity=0.669 Sum_probs=22.8
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+..+..++++|++||||||++-.+...
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34556789999999999999988665543
No 270
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.86 E-value=0.043 Score=50.65 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+..+.|.||+||||||++-.+...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999988666543
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.84 E-value=0.055 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++||.||||||++-.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999998766543
No 272
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.82 E-value=0.054 Score=63.65 Aligned_cols=41 Identities=24% Similarity=0.162 Sum_probs=29.3
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCcc
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 68 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~ 68 (511)
+.+++++++.||+|+|||+++..++.+.... +. ++.++...
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~-G~-~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GK-TCAFIDAE 1464 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TC-CEEEECTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CC-cEEEEEcc
Confidence 4578999999999999998887777665432 33 44454433
No 273
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.76 E-value=0.11 Score=46.95 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..+++.||+|+|||+++-.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999988755543
No 274
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.70 E-value=0.1 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++++++.||+|+|||+++-.+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999977655543
No 275
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.68 E-value=0.099 Score=46.25 Aligned_cols=23 Identities=39% Similarity=0.278 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++..+.|+||+||||||++-.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999875543
No 276
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.66 E-value=0.025 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+++.||+||||||++-.+...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999888655543
No 277
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.62 E-value=0.065 Score=46.68 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=20.5
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++..++++|++||||||+...+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999988865544
No 278
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.58 E-value=0.038 Score=47.67 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+.|+|++||||||++..++-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999998876654
No 279
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.57 E-value=0.14 Score=45.39 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHHh
Q 010422 16 ASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 16 ~~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l~ 51 (511)
....+++...+..+ ..+++.||+|+|||+++-.+..
T Consensus 23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34455565566555 3599999999999988755543
No 280
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.51 E-value=0.11 Score=51.85 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=31.1
Q ss_pred CEEEEEcCCCCchhchHHHHHhhcccc-CCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~~~~-~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
.+++++|++|+||||++..++...... ..+..++-.-|.+..+......+....+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~ 156 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCC
Confidence 378889999999998877666444332 2233333344655555443333333333
No 281
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.51 E-value=0.046 Score=49.66 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=19.9
Q ss_pred hcCCEEEEEcCCCCchhchHHHHH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+|..+.|.|++||||||++-.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999885543
No 282
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.51 E-value=0.066 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..+.|+||+||||||++-.+.-.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999998666543
No 283
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.48 E-value=0.06 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.2
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+|..++++|+.||||||++-.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 57789999999999999875543
No 284
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.44 E-value=0.51 Score=47.99 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchhchHHHHHhhc
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+++++|++|+||||++..++...
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68889999999999887776543
No 285
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.40 E-value=0.082 Score=46.28 Aligned_cols=27 Identities=37% Similarity=0.662 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..++..++++|+.||||||++..+...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999988666543
No 286
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.39 E-value=0.064 Score=46.43 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++.+++++|++||||||++..+...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999988665433
No 287
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.36 E-value=0.27 Score=46.65 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHhcCC--EEEEEcCCCCchhchHHHHH
Q 010422 22 LVEEVRKND--ILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 22 ~~~~l~~~~--~~~i~apTGsGKTt~~~~~l 50 (511)
+...+.+++ ..++.||.|+|||+.+..+.
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 334455554 78999999999997764443
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.34 E-value=0.066 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+-++|+||+||||||++-.++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999988665543
No 289
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.34 E-value=0.072 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.++|+|++||||||++-.++-.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 36899999999999998776643
No 290
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.30 E-value=0.077 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++..++++|+.||||||++..+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5778999999999999998766543
No 291
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.28 E-value=0.092 Score=51.90 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+..|+.+.|.||+||||||++.+++...
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 4578999999999999999988665443
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.23 E-value=0.071 Score=45.92 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..++++|++||||||++-.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999998866544
No 293
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.23 E-value=0.094 Score=50.34 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=24.4
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
-+..|..++|.||+|||||+++.+++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 35678899999999999999888887654
No 294
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.21 E-value=0.065 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..++|+||||||||+++..+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46889999999999887555433
No 295
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.17 E-value=0.077 Score=52.45 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=29.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~ 70 (511)
.+.+++|+||||||||+++-.++...... +..+++.-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~--~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ--GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC--CCEEEEEeCCcC
Confidence 57789999999999998887666544322 345666666543
No 296
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.17 E-value=0.13 Score=48.74 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=23.8
Q ss_pred HHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 23 VEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 23 ~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+..+..|+.+.+.||+|+||||++-.+.
T Consensus 159 L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 159 LVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 3455678999999999999999997776
No 297
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.10 E-value=0.082 Score=51.34 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=24.4
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.+..|+.+.|.||+||||||++.+++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688899999999999999988777654
No 298
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.07 E-value=0.041 Score=55.03 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCchhchHHHHHhhc
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.+++++|++|+||||++..+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999998877665543
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.06 E-value=0.068 Score=46.71 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+..++++|+.||||||++..+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999998866543
No 300
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.03 E-value=0.12 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..++++||+||||||++-.+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999866654
No 301
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.00 E-value=0.034 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+++.||+||||||++-.+...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 34899999999999887655543
No 302
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.99 E-value=0.093 Score=46.80 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+. ..+..+..++++|++||||||++-.+.
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344444 456788899999999999999885543
No 303
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.99 E-value=0.042 Score=53.31 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=24.3
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhcc
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~~ 54 (511)
-+..|..++|.||+||||||++..++....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355688999999999999999877776543
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.96 E-value=0.069 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...++|+|++||||||++-.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999998865543
No 305
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.82 E-value=0.087 Score=47.59 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=20.0
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+...++++|++||||||++-.+...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999998666543
No 306
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.82 E-value=0.069 Score=55.15 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.4
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+|+.+.++||+||||||++-.+.-
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 568999999999999999999866653
No 307
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=91.79 E-value=0.076 Score=53.33 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=30.0
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 72 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~ 72 (511)
.+.+++|.|+||||||+.+..++..... .+..++++-|.....
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~--~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL--RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH--TTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEeCCCchh
Confidence 3568999999999999876555443322 144677778877664
No 308
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.77 E-value=0.09 Score=46.81 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhchHHHHHhhc
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
++++.||+||||+|++..+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999997776554
No 309
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.76 E-value=0.18 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.+++.||+|+|||+++-.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 67899999999999988765544
No 310
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.74 E-value=0.057 Score=56.42 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+++...+.+|+.+.++||+||||||++-.+.
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 34455567899999999999999999985443
No 311
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.73 E-value=0.077 Score=49.46 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=17.6
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.++||+||||||++-.+.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999866653
No 312
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.65 E-value=0.086 Score=45.89 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++..++++|++||||||++-.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999998866543
No 313
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.64 E-value=0.12 Score=49.98 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=23.9
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+..|..++|.||+|||||+++..++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5578899999999999999888877654
No 314
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.64 E-value=0.087 Score=53.22 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~ 55 (511)
++...+++.-+..|+.++|.|++|+|||+++..++.....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3445556555778999999999999999998887765543
No 315
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.64 E-value=0.12 Score=49.48 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~ 55 (511)
.+-..+++--+..|..++|.|++|+|||+++.+++.....
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3445555555778999999999999999988887766543
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.62 E-value=0.085 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..++++|++||||||++-.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999865543
No 317
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.62 E-value=0.064 Score=56.09 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+++...+.+|+.+.++||+||||||++-.+.
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 334455567799999999999999999986654
No 318
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.61 E-value=0.12 Score=47.31 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.....++++||.||||||++-.+.-.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35567999999999999998766543
No 319
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.60 E-value=0.17 Score=48.48 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 15 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 15 ~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
-....+.+...+..+.++++.||+|+|||+++-.+..
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHH
Confidence 3455566667777889999999999999977755443
No 320
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.59 E-value=0.15 Score=48.26 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHhcC-----------CEEEEEcCCCCchhchHHHHHh
Q 010422 14 PIASVEKRLVEEVRKN-----------DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 14 ~~~~~q~~~~~~l~~~-----------~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.-.+..+.+...+..+ ..+++.||+|+|||+++-.+..
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 4445555555555543 4799999999999977755443
No 321
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.57 E-value=0.088 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=18.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.| ..+|+|||||||||++..+.
T Consensus 23 ~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SE-EEEEECCTTSSHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHH
Confidence 44 67899999999999986554
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.54 E-value=0.088 Score=46.73 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++..++++|+.||||||++..+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667899999999999998766543
No 323
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.54 E-value=0.083 Score=51.26 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhcc
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~~ 54 (511)
-+..|+.++|.||+||||||++.+++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999877776543
No 324
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.45 E-value=0.066 Score=56.17 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+++...+.+|+.+.++||+||||||++-.+.
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 34455567889999999999999999986554
No 325
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.41 E-value=0.21 Score=45.25 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..|..+++.||.||||||++..+...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 36788999999999999998666543
No 326
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.30 E-value=0.096 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=17.8
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..++|+|||||||||++..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999988755543
No 327
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.30 E-value=0.22 Score=45.80 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+++.||+|||||+++-.+..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999988755543
No 328
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.29 E-value=0.19 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...+++.||+|+|||+++-.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999987755543
No 329
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.29 E-value=0.11 Score=46.49 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+..++++|+.||||||++-.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999998666543
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.25 E-value=0.1 Score=46.04 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.5
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.|+|++||||||++-.+.-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 688999999999998865543
No 331
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.23 E-value=0.19 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=21.4
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.++.+++|.|+||||||+++-.++.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999988766654
No 332
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.21 E-value=0.1 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.7
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..++|+|||||||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999988755543
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.19 E-value=0.091 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=22.3
Q ss_pred HHHhc--CCEEEEEcCCCCchhchHHHHH
Q 010422 24 EEVRK--NDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 24 ~~l~~--~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+ ++.+.|+||+||||||++-.+.
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHH
Confidence 34567 8899999999999999986654
No 334
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.18 E-value=0.16 Score=49.23 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...|+.+.++||+|+||||++..++-
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhc
Confidence 45899999999999999999866653
No 335
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.18 E-value=0.068 Score=56.04 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+++...+.+|+.+.++||+||||||++-.+.-
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 334455567899999999999999999866543
No 336
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.17 E-value=0.11 Score=46.11 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++..++++|+.||||||++-.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 577899999999999998866653
No 337
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.14 E-value=0.17 Score=51.48 Aligned_cols=38 Identities=8% Similarity=0.111 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 13 l~~~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
++-....+.+...+..+.++++.||+|+|||+++-.+.
T Consensus 25 vGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp SSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHH
Confidence 34556667777788899999999999999997764443
No 338
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.11 E-value=0.3 Score=45.07 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=19.7
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHH
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
...+..+++.||+|+|||+++-.+.
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHH
Confidence 4467789999999999997764444
No 339
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.09 E-value=0.11 Score=46.06 Aligned_cols=20 Identities=45% Similarity=0.551 Sum_probs=17.1
Q ss_pred EEEEEcCCCCchhchHHHHH
Q 010422 31 ILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l 50 (511)
.+.++||+||||||++-.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999886664
No 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.08 E-value=0.12 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++++++|+.||||||+.-.+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999988655443
No 341
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.08 E-value=0.19 Score=42.96 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+.++|++||||||++..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999988776543
No 342
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.07 E-value=0.12 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+++.|+.||||||++..+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5789999999999998666543
No 343
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.01 E-value=0.21 Score=42.98 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..++++|++||||||++..++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999988776643
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.97 E-value=0.13 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..++++|+.||||||++-.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988665543
No 345
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.96 E-value=0.11 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++|+||.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998766543
No 346
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.94 E-value=0.12 Score=45.91 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++..++++|+.||||||++..+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999876654
No 347
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.93 E-value=0.076 Score=55.56 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+++...+.+|+.+.++||+||||||++-.+.
T Consensus 359 l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp EEEEEEEECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34444567789999999999999999985443
No 348
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.92 E-value=0.096 Score=54.77 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.0
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+|+.+.|.||+||||||++-.+.-
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhc
Confidence 456899999999999999999866653
No 349
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.85 E-value=0.12 Score=45.10 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=17.6
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++++|+.||||||++..+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998866544
No 350
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.85 E-value=0.13 Score=45.91 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++||.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998766543
No 351
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.81 E-value=0.23 Score=48.43 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=19.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
....+++.||+|+|||+++-.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999987655543
No 352
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.80 E-value=0.1 Score=46.90 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
....++++||.||||||++-.+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999998666543
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.80 E-value=0.1 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=15.4
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++..++++|+.||||||++-.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999866543
No 354
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.76 E-value=0.1 Score=53.93 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.6
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..|+.+.|.||+||||||++-.+.-
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999866653
No 355
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.71 E-value=0.14 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=16.9
Q ss_pred cCCEEEEEcCCCCchhchHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQ 48 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~ 48 (511)
+...+++.||+|+|||+++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHH
Confidence 345799999999999987733
No 356
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.71 E-value=0.093 Score=54.91 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.3
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+|+.+.|.||+||||||++-.+.-
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 568999999999999999999866643
No 357
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.69 E-value=0.093 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHH
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+|+.+.|.||+||||||++-.+.
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999999986654
No 358
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.67 E-value=0.22 Score=47.86 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc
Q 010422 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (511)
Q Consensus 16 ~~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~ 55 (511)
++-..+++.-+..|+.++|.|++|+|||+++..++.....
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5556666666889999999999999999988877765543
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.67 E-value=0.12 Score=44.46 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+++|+|++||||||++-.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999988655443
No 360
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.67 E-value=0.13 Score=45.59 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCCchhchHHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l 50 (511)
....+|+||||||||+++..+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999998876553
No 361
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.61 E-value=0.1 Score=54.56 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+|+.+.|.||+||||||++-.+.-
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999866653
No 362
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.58 E-value=0.12 Score=48.71 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=17.2
Q ss_pred CCEEEEEcCCCCchhchHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~ 49 (511)
+..+.|+||+||||||++-.+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457889999999999987544
No 363
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.48 E-value=0.069 Score=50.60 Aligned_cols=40 Identities=13% Similarity=-0.011 Sum_probs=27.6
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
+..| .+.|.||+||||||++.+++........+..++++.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 5567 789999999999999888876654321133444443
No 364
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.46 E-value=0.12 Score=49.10 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..++.+++.||+|||||+++-.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45678999999999999887655543
No 365
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.44 E-value=0.087 Score=56.12 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhchH
Q 010422 20 KRLVEEVRKNDILIIVGETGSGKTTQL 46 (511)
Q Consensus 20 ~~~~~~l~~~~~~~i~apTGsGKTt~~ 46 (511)
+.+...+.+|+.+.|+||+||||||++
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHh
Confidence 344455679999999999999999995
No 366
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.42 E-value=0.087 Score=56.10 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.3
Q ss_pred HHHHHHhcCCEEEEEcCCCCchhchHH
Q 010422 21 RLVEEVRKNDILIIVGETGSGKTTQLP 47 (511)
Q Consensus 21 ~~~~~l~~~~~~~i~apTGsGKTt~~~ 47 (511)
.+...+.+|+.+.|+||+||||||++-
T Consensus 340 ~vsl~I~~Ge~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 340 NVSVKIPLGTFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp SEEEEEETTSEEEEECSTTSSHHHHHT
T ss_pred cceeEecCCCEEEEEeeCCCCHHHHHH
Confidence 344456789999999999999999983
No 367
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.42 E-value=0.15 Score=51.27 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccc
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~ 55 (511)
+-..+++--+..|+.++|.|++|+|||+++..++.....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 344455544678899999999999999988887766543
No 368
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.38 E-value=0.18 Score=47.85 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.4
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+..++.+.+.||+||||||++-.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 345678999999999999999985554
No 369
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.29 E-value=0.36 Score=42.22 Aligned_cols=39 Identities=33% Similarity=0.300 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccH
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~ 69 (511)
...+++.+++|.||||.+.-..+...-. +.++++++-.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC
Confidence 3467778888999998876666655433 55677776444
No 370
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.19 E-value=0.077 Score=51.37 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=21.7
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..++..+.++|++|+||||++..++..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 446778999999999999988766543
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.19 E-value=0.16 Score=45.46 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
++..+++.|+.||||||++..+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999998666543
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.19 E-value=0.077 Score=47.24 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.7
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++|+|+.||||||++..+.-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999866553
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.16 E-value=0.14 Score=43.76 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.++++|+.||||||++-.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999998865543
No 374
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.15 E-value=0.33 Score=44.54 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.9
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
....+++.||+|+|||+++-.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999988755544
No 375
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.09 E-value=0.14 Score=49.70 Aligned_cols=29 Identities=34% Similarity=0.320 Sum_probs=24.3
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhcc
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~~ 54 (511)
+..|..++|.||+|||||+++.+++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55789999999999999999877776543
No 376
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.09 E-value=0.11 Score=53.50 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHH
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+|+.+.++||+||||||++-.+.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHh
Confidence 4588999999999999999986654
No 377
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.97 E-value=0.2 Score=47.91 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.7
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+..|..++|.||+|||||+++.+++...
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999888887653
No 378
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.96 E-value=0.13 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..++|+||||||||+++..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4678999999999988755443
No 379
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=89.90 E-value=0.41 Score=50.73 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=51.5
Q ss_pred hccCCCHHHHHHHHHH----HhcCC-EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCccHHHHHHHHHHHHHHhC
Q 010422 10 RKSLPIASVEKRLVEE----VRKND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (511)
Q Consensus 10 ~~~l~~~~~q~~~~~~----l~~~~-~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~~~ 84 (511)
...++|+..|.+.+.. +.+|. ...+.|-||||||.++...+... +..++++.|....+.+....+..+.+
T Consensus 8 ~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 8 VSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred ecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 3456788888766654 44454 56789999999997776555432 22478889999999999999888865
No 380
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.87 E-value=0.16 Score=44.38 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++++|+.||||||++..+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999866543
No 381
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.86 E-value=0.15 Score=44.93 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..++++|+.||||||++-.+...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999988666543
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.84 E-value=0.18 Score=45.65 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+..+++.|++||||||++-.+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999998666544
No 383
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.81 E-value=0.17 Score=42.96 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=17.5
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++++|+.||||||++-.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999998866544
No 384
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.77 E-value=0.16 Score=44.18 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..++++|+.||||||++-.+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988665443
No 385
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.75 E-value=0.18 Score=43.96 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++++|+.||||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998865543
No 386
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.73 E-value=1.1 Score=50.71 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecc-ccccCCCCCC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-IAETSVTIPG 331 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-~~~~Gvdip~ 331 (511)
.+.+++|.+||+.-+++.++.+.+.+... +..+..+++..+..++..+.+...+|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~-----~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANW-----PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTT-----TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcC-----CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 36789999999999999999988775422 46788889999999999988888899999999994 5566688888
Q ss_pred eEEEE
Q 010422 332 IKYVI 336 (511)
Q Consensus 332 v~~VI 336 (511)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 88776
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.71 E-value=0.15 Score=44.06 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..++++|++||||||++-.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999988665443
No 388
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.71 E-value=0.18 Score=48.73 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcC--CEEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~--~~~~i~apTGsGKTt~~~~~l 50 (511)
...+.+...+..+ .++++.||+|+|||+++-.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la 79 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALT 79 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445666666666 569999999999998875554
No 389
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=89.68 E-value=0.15 Score=49.18 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=17.5
Q ss_pred CCEEEEEcCCCCchhchHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~ 49 (511)
....+|+||||||||+++..+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 347789999999999988754
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.61 E-value=0.16 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998666543
No 391
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.60 E-value=0.15 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+++.||+||||||++-.+.-.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999888655443
No 392
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.57 E-value=0.44 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..+.++|++|+||||++..++-.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999877643
No 393
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.49 E-value=0.12 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..++++|++||||||++..+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998865543
No 394
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.47 E-value=0.18 Score=45.35 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999998766543
No 395
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.38 E-value=0.17 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...++++|++||||||++-.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999998866543
No 396
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.35 E-value=0.42 Score=45.84 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
...+++...+..+..++|.||.|+|||+++-.++..
T Consensus 19 ~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 19 EESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 345556666666889999999999999998777654
No 397
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.34 E-value=0.2 Score=50.36 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeC
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~ 66 (511)
+-..+++.-+..|..++|.|++|+|||+++.+++...... +..++++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fS 232 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS 232 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEEC
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEE
Confidence 3444444456788999999999999999988887765543 33455544
No 398
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.33 E-value=0.16 Score=58.47 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.+.+...+..|+.+.|+|||||||||++..+.
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 455666678899999999999999999885554
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.26 E-value=0.17 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCchhchHHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l 50 (511)
+..++|+|+.||||||++-.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999886553
No 400
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.25 E-value=0.064 Score=50.94 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.5
Q ss_pred HHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 24 EEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 24 ~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+|+.+.+.||+|+||||++-.++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhc
Confidence 355689999999999999999985543
No 401
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.25 E-value=0.18 Score=44.37 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=18.1
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+.|+|++||||||++-.+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999998866544
No 402
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.24 E-value=0.39 Score=45.58 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCC--EEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~--~~~i~apTGsGKTt~~~~~l 50 (511)
...+.+...+..++ ++++.||+|+|||+++-.+.
T Consensus 32 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 32 HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence 34445555566665 79999999999998775544
No 403
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.23 E-value=0.19 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=17.5
Q ss_pred CCEEEEEcCCCCchhchHHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l 50 (511)
+.++++.||+|+|||+++-.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3479999999999998775443
No 404
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.12 E-value=0.16 Score=55.86 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=24.5
Q ss_pred HHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 22 LVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+...+.+|+.+.|+||+||||||++-.+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34456789999999999999999987776
No 405
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.07 E-value=0.35 Score=45.56 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCchhchHHHHHhhc
Q 010422 30 DILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
..+++.||+|+|||+++-.+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999998775555443
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.05 E-value=0.47 Score=42.31 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+|..+++.|+.||||||++..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 57889999999999999986554
No 407
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.04 E-value=0.17 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.9
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+.+ +.+.|+||+||||||++-.+.
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHH
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHh
Confidence 3556 899999999999999987665
No 408
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=88.98 E-value=0.18 Score=49.44 Aligned_cols=22 Identities=41% Similarity=0.803 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...+|+||||||||+++..+.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988766543
No 409
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.82 E-value=0.29 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=19.0
Q ss_pred hcCCEEEEEcCCCCchhchHHHHH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+..+++.||+|+|||+++-.+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHH
Confidence 456789999999999997664443
No 410
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.79 E-value=0.45 Score=46.22 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
..+.+++.||+|+|||+++-.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999887655443
No 411
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.79 E-value=0.19 Score=45.38 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=17.8
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
...+|..+++.|+.||||||++..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999999986554
No 412
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.73 E-value=0.2 Score=48.74 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 22 LVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 22 ~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+...+.+|+.+.|.||+|+|||+++..+.
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Ia 195 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIA 195 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHH
Confidence 44445689999999999999998886544
No 413
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.65 E-value=0.16 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=19.4
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..| ..+|+||||||||+++..+.+
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHH
Confidence 345 899999999999988866553
No 414
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.52 E-value=0.22 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=19.9
Q ss_pred hcCCEEEEEcCCCCchhchHHHHH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.+|..+++.|+.||||||++..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 467889999999999999986654
No 415
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.49 E-value=0.17 Score=48.07 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHhh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+..+..+++.||+|+|||+++.+++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456677899999999999988777654
No 416
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.45 E-value=0.44 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+.+++.||+|+|||+++-.+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 368999999999999877555543
No 417
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=88.43 E-value=0.21 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..++.++|+||+||||||++..+..
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999988866654
No 418
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.39 E-value=0.21 Score=51.17 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhchHHHHHhhcccc
Q 010422 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC 56 (511)
Q Consensus 17 ~~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~~~~~~ 56 (511)
+...+++.-+..|..++|.|++|+|||+++.+++......
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~ 269 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA 269 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh
Confidence 3445555457789999999999999999988888776543
No 419
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.38 E-value=0.23 Score=43.25 Aligned_cols=22 Identities=27% Similarity=0.681 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+++.|++|+||||++-.+.-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999998776643
No 420
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=88.35 E-value=0.18 Score=49.03 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=30.6
Q ss_pred eEEEEc---cCCCCHHHHHhhcCcCCCCCeEEEEeccccccCCCCCCeEEEEeCC
Q 010422 288 LVTVPI---FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 339 (511)
Q Consensus 288 ~~v~~l---h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gvdip~v~~VI~~g 339 (511)
..+..+ .+++++..|..+++.+.+-..-+|++|. .+. ..+..++++-|
T Consensus 293 p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th-~~~---~~~~i~~l~~G 343 (359)
T 2o5v_A 293 DPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTE-LAP---GAALTLRAQAG 343 (359)
T ss_dssp CCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESS-CCT---TCSEEEEEETT
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEe-ccc---cCCEEEEEECC
Confidence 345544 6899999998887766543356677777 333 44555666655
No 421
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.20 E-value=0.22 Score=48.48 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=24.5
Q ss_pred HHhcCCEEEEEcCCCCchhchHHHHHhhcc
Q 010422 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (511)
Q Consensus 25 ~l~~~~~~~i~apTGsGKTt~~~~~l~~~~ 54 (511)
-+..|..++|.||+|||||+++..++....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 356788999999999999988877776543
No 422
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.16 E-value=0.27 Score=43.97 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+|..+++.|+.||||||++..+.-.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998766543
No 423
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.12 E-value=0.25 Score=43.26 Aligned_cols=22 Identities=27% Similarity=0.681 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+++.|++|+||||++-.+.-.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999998776643
No 424
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.02 E-value=0.18 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+.+|.+++++|++||||||++-.+.-
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH
Confidence 45788999999999999998765543
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.99 E-value=0.26 Score=51.50 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|+.+.|.||+||||||++-.+.-
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhc
Confidence 37799999999999999866543
No 426
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.93 E-value=0.4 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...+++.||+|+|||+++-.+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999988755543
No 427
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.93 E-value=0.3 Score=44.25 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
....+.|.||+||||||++..+...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999988666543
No 428
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.69 E-value=0.31 Score=44.22 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=20.8
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
-..+..+.|+|++||||||++..+.-
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999998866553
No 429
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.68 E-value=0.27 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+++.||+|+|||+++-.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999877655544
No 430
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.65 E-value=0.63 Score=42.19 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.5
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+|..+++.|+.||||||++..+.-
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998866543
No 431
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.62 E-value=0.092 Score=52.27 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.4
Q ss_pred HhcCCEEEEEcCCCCchhchHHHHH
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+..| .++++|||||||||++..+.
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHH
Confidence 3466 89999999999999886553
No 432
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.50 E-value=0.3 Score=42.85 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=17.8
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+.++|+.||||||+...+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999988866544
No 433
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.47 E-value=0.51 Score=45.83 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCC---EEEEEcCCCCchhchHHHHHh
Q 010422 17 SVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 17 ~~q~~~~~~l~~~~---~~~i~apTGsGKTt~~~~~l~ 51 (511)
...+.+...+..++ .+++.||+|+|||+++-.+..
T Consensus 23 ~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp HHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555666665 489999999999988765543
No 434
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.45 E-value=0.35 Score=48.60 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=22.8
Q ss_pred HHHHHHhcCC--EEEEEcCCCCchhchHHHHHh
Q 010422 21 RLVEEVRKND--ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 21 ~~~~~l~~~~--~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+...+..++ .+++.||+|+|||+++-.+..
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHH
Confidence 3445566665 599999999999988755543
No 435
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=86.96 E-value=0.25 Score=54.01 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.5
Q ss_pred HhcCCEEEEEcCCCCchhchHHHH
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~ 49 (511)
+.+|+.++|+||+||||||++-+.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i 693 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQV 693 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHH
Confidence 456889999999999999988654
No 436
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=86.95 E-value=0.31 Score=52.60 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+|+.++|+||+||||||++-++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3678999999999999998866543
No 437
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.78 E-value=0.32 Score=50.20 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=19.8
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++.++++.||+|+||||++-.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988765543
No 438
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=86.78 E-value=0.72 Score=45.60 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=61.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccccc----cCC
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE----TSV 327 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~~----~Gv 327 (511)
..++.+||.+|++.-+.++++.+.+... .++.+..+||+.+..++....+.+.+|..+|+|+|+-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 4477899999999999999999888522 367899999999998887777777778889999997321 114
Q ss_pred CCCCeEEEE
Q 010422 328 TIPGIKYVI 336 (511)
Q Consensus 328 dip~v~~VI 336 (511)
+..++++||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 455777776
No 439
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.76 E-value=0.56 Score=45.47 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
...+++.||+|+|||+++-.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999877655544
No 440
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.72 E-value=0.35 Score=46.23 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
...+++.||+|+|||+++-.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999877555443
No 441
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=86.70 E-value=0.63 Score=47.04 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=24.6
Q ss_pred HHHHHHHHHH--hcCCEEEEEcCCCCchhchHHHHHh
Q 010422 17 SVEKRLVEEV--RKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 17 ~~q~~~~~~l--~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..+.++..+ ....++++.||+|+|||+++-.+..
T Consensus 187 ~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 187 KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3444455555 3456899999999999988755543
No 442
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.65 E-value=0.31 Score=41.57 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
++..++++|++|+||||++..+.-
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455789999999999999877654
No 443
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=86.56 E-value=0.49 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCCchhchHHHHHh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
....+++.||+|+|||+++-.+..
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 455799999999999977755543
No 444
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.54 E-value=0.47 Score=44.82 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCC--EEEEEcCCCCchhchHHHHH
Q 010422 18 VEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 18 ~q~~~~~~l~~~~--~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+...+..++ ++++.||+|+|||+++-.+.
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~ 59 (319)
T 2chq_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA 59 (319)
T ss_dssp HHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHH
Confidence 3444444444444 59999999999998775444
No 445
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.40 E-value=0.18 Score=55.29 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhchHHHHHh
Q 010422 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 19 q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+...+..|+.+.|.||+||||||++-.+.-
T Consensus 689 L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344555678999999999999999999866653
No 446
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.39 E-value=0.3 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=15.3
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
+...+.|+||.||||||++-.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999875544
No 447
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.37 E-value=0.88 Score=40.24 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCCchhchHHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l 50 (511)
|+.+++.|+-||||||++..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVY 23 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999999986544
No 448
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.35 E-value=0.33 Score=41.93 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.2
Q ss_pred EEEEcCCCCchhchHHHHHhh
Q 010422 32 LIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 32 ~~i~apTGsGKTt~~~~~l~~ 52 (511)
++|+|++|||||+++..+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999998887654
No 449
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=86.30 E-value=0.35 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
|+.++|+||+||||||++-++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 88999999999999998866543
No 450
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=86.25 E-value=0.48 Score=45.62 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=19.7
Q ss_pred HHHhcCCE--EEEEcCCCCchhchHHHH
Q 010422 24 EEVRKNDI--LIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 24 ~~l~~~~~--~~i~apTGsGKTt~~~~~ 49 (511)
..+..|+. ++++||.||||||++-.+
T Consensus 17 ~~i~~g~~~~i~l~G~~G~GKTTl~~~l 44 (359)
T 2ga8_A 17 NRIEDNYRVCVILVGSPGSGKSTIAEEL 44 (359)
T ss_dssp HTTTTCSCEEEEEECCTTSSHHHHHHHH
T ss_pred HHhccCCeeEEEEECCCCCcHHHHHHHH
Confidence 33456665 899999999999887443
No 451
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.23 E-value=0.35 Score=41.33 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhh
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.|.-++++|+.|+||||++..++..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4567899999999999888766653
No 452
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.20 E-value=2.7 Score=37.52 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccc-----c-ccC
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----A-ETS 326 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~G 326 (511)
.+.++||.+|+++-++++++.+.+.... ..+..+..++|+.+..++....+ ..+|+|+|.- + ...
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~ 161 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIK----MEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDY 161 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT----STTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc----cCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCC
Confidence 4568999999999999999888775322 12567888899998877665543 4689999972 1 234
Q ss_pred CCCCCeEEEE
Q 010422 327 VTIPGIKYVI 336 (511)
Q Consensus 327 vdip~v~~VI 336 (511)
++..++++||
T Consensus 162 ~~~~~~~~lV 171 (230)
T 2oxc_A 162 LNPGSIRLFI 171 (230)
T ss_dssp SCGGGCCEEE
T ss_pred cccccCCEEE
Confidence 5667776666
No 453
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=86.17 E-value=0.62 Score=47.89 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=29.8
Q ss_pred hcCCEEEEEcCCCCchhchHHHHHhhccccC--CCeEEEEeCccH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCR--DGKLIGVTQPRR 69 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~l~~~~~~~--~~~~i~~~~p~~ 69 (511)
.+..+++|.|.||||||+++-.++....... ...+++++-|..
T Consensus 212 ~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 212 AKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 3457899999999999988776665443321 245677777764
No 454
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.16 E-value=0.4 Score=39.91 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+++.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999998776643
No 455
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.06 E-value=0.38 Score=42.30 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.7
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.|+|+.||||||++..+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 788999999999998866544
No 456
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.04 E-value=0.4 Score=40.46 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+++.|++|+||||++-.+.-
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999877653
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.98 E-value=0.38 Score=45.34 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..++++|++||||||++-.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999998866543
No 458
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.88 E-value=0.39 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.6
Q ss_pred CEEEEEcCCCCchhchHHHHHh
Q 010422 30 DILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..+.|+|+.||||||++-.+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999998765543
No 459
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=85.87 E-value=0.35 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=20.5
Q ss_pred HhcCCEEEEEcCCCCchhchHHHH
Q 010422 26 VRKNDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 26 l~~~~~~~i~apTGsGKTt~~~~~ 49 (511)
+.+|+.++|+||+||||||++-+.
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHH
Confidence 346789999999999999988665
No 460
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=85.79 E-value=6 Score=34.78 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=54.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccc-----c-ccCC
Q 010422 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----A-ETSV 327 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gv 327 (511)
..++||.+|+++-++++++.+.+.... .++..+..++|+.+..++...+. ++..+|+|+|.- + ...+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY----MPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT----STTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSS
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh----CCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCC
Confidence 348999999999999998888775322 22567888999998776654432 345689999962 1 2346
Q ss_pred CCCCeEEEE
Q 010422 328 TIPGIKYVI 336 (511)
Q Consensus 328 dip~v~~VI 336 (511)
++.++++||
T Consensus 155 ~~~~~~~lV 163 (220)
T 1t6n_A 155 NLKHIKHFI 163 (220)
T ss_dssp CCTTCCEEE
T ss_pred CcccCCEEE
Confidence 677888777
No 461
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.78 E-value=0.44 Score=41.98 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhchHHHHHhhc
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
..+++|+.|||||+.+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999998765554443
No 462
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.71 E-value=0.38 Score=47.09 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
..++++.||+|+|||+++-.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999987755543
No 463
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.65 E-value=0.43 Score=40.01 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++|++|+|||+++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999998776643
No 464
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.64 E-value=0.41 Score=39.88 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+++.|++|+|||+++..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999998777644
No 465
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.47 E-value=0.26 Score=56.44 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+++...+.+|+.+.|+|||||||||++-.+.
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~ 437 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTT
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 445556667899999999999999999986554
No 466
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.45 E-value=0.39 Score=44.35 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+.+++.||+|+|||+++-.+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 45689999999999988755544
No 467
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.36 E-value=0.45 Score=41.18 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
-.+++.|++|+|||+++..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999998766544
No 468
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.29 E-value=0.14 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+.|+|||||||||++-.+...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4568899999999988766543
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.28 E-value=0.33 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.6
Q ss_pred hcCCEEEEEcCCCCchhchHHHH
Q 010422 27 RKNDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 27 ~~~~~~~i~apTGsGKTt~~~~~ 49 (511)
.++..+++.|+.||||||++..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L 44 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNIL 44 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTT
T ss_pred cCceEEEEECCCCCCHHHHHHHH
Confidence 45678899999999999998544
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.26 E-value=0.4 Score=43.56 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
+..+++.|+.||||||++..+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999998865543
No 471
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.19 E-value=0.68 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
+.+++.||+|+|||+++-.+...
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 58999999999999877544433
No 472
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.17 E-value=0.4 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCchhchHHHHH
Q 010422 30 DILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l 50 (511)
..++|+|+.||||||++-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999886665
No 473
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.14 E-value=0.94 Score=42.80 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCC--EEEEEcCCCCchhchHHHHH
Q 010422 17 SVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 17 ~~q~~~~~~l~~~~--~~~i~apTGsGKTt~~~~~l 50 (511)
...+.+...+..++ ++++.||+|+|||+++-.+.
T Consensus 28 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 28 ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence 34445555565554 48999999999998775544
No 474
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.10 E-value=0.99 Score=45.22 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+.+++.||+|+|||+++-.+...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999877555543
No 475
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.08 E-value=2 Score=38.71 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=54.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecc-----ccc-cCC
Q 010422 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAE-TSV 327 (511)
Q Consensus 254 ~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----~~~-~Gv 327 (511)
+..+||.+|+++-+.++++.+.+..... +..+..++|+.+..++...+.. ..+|+|+|+ .+. ..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRAC-----RLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKT 172 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhc-----CceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCC
Confidence 5679999999999999988887764432 5678888999988776554432 367999996 222 345
Q ss_pred CCCCeEEEE
Q 010422 328 TIPGIKYVI 336 (511)
Q Consensus 328 dip~v~~VI 336 (511)
++.++++||
T Consensus 173 ~~~~~~~lV 181 (242)
T 3fe2_A 173 NLRRTTYLV 181 (242)
T ss_dssp CCTTCCEEE
T ss_pred CcccccEEE
Confidence 677888777
No 476
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=84.91 E-value=0.49 Score=40.26 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++|++|+|||+++..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999998776644
No 477
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=84.79 E-value=0.51 Score=39.64 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhchHHHHHhhc
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.++++|++|+|||+++..++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999987776543
No 478
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=84.76 E-value=0.51 Score=39.37 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+++.|++|+|||+++..++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999998766644
No 479
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.72 E-value=0.5 Score=39.61 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchhchHHHHHhhc
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.+++.|++|+|||+++..++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999987776443
No 480
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=84.70 E-value=0.5 Score=40.66 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.++++|++|+||||++..+.-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999877754
No 481
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.64 E-value=0.47 Score=42.61 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCCchhchHHHHH
Q 010422 28 KNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l 50 (511)
.|..+++.|+.||||||++..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 57789999999999999885554
No 482
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.49 E-value=9.4 Score=32.98 Aligned_cols=76 Identities=8% Similarity=0.089 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecc-----cccc-C
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAET-S 326 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----~~~~-G 326 (511)
.+.++||.+|++.-++++++.+.+.... .++..+..++|+.+..++..... +..+|+|+|. .+.. .
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKH----MGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTT----SSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhh----cCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 3567999999999999998888776432 22566788899988766544332 3568999997 2222 3
Q ss_pred CCCCCeEEEE
Q 010422 327 VTIPGIKYVI 336 (511)
Q Consensus 327 vdip~v~~VI 336 (511)
.+..++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4566777776
No 483
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.40 E-value=0.53 Score=39.31 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchhchHHHHHhhc
Q 010422 31 ILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
.+++.|++|+|||+++..+....
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999987766443
No 484
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=84.39 E-value=0.51 Score=39.64 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999998776643
No 485
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=84.14 E-value=0.56 Score=39.77 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++|++|+|||+++..++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999998777643
No 486
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.06 E-value=0.57 Score=39.36 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+++.|++|+|||+++..++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999877664
No 487
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=83.98 E-value=0.47 Score=40.87 Aligned_cols=21 Identities=62% Similarity=0.822 Sum_probs=17.6
Q ss_pred EEEEEcCCCCchhchHHHHHh
Q 010422 31 ILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~ 51 (511)
.+++.|++|+||||++-.+.-
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999866553
No 488
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.96 E-value=0.61 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
...++++|++||||||++-.+..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999998866543
No 489
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=83.95 E-value=0.49 Score=40.96 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCchhchHHHHHh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLF 51 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~ 51 (511)
.-.++++|++|+|||+++..++-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34789999999999999876653
No 490
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.95 E-value=0.37 Score=55.15 Aligned_cols=33 Identities=36% Similarity=0.514 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhchHHHHH
Q 010422 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (511)
Q Consensus 18 ~q~~~~~~l~~~~~~~i~apTGsGKTt~~~~~l 50 (511)
..+.+...+.+|+.+.|+|||||||||++-.+.
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHT
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344556667899999999999999999886654
No 491
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.87 E-value=2.9 Score=37.58 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=46.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEecc-----cccc-C
Q 010422 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAET-S 326 (511)
Q Consensus 253 ~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----~~~~-G 326 (511)
.+.++||.+|+++-+.++++.+.+.... .+..+..++|+....++ .+.+..+...|+|+|. .+.. .
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~ 168 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY-----MGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRY 168 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh-----cCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCC
Confidence 3568999999999999999888876322 14566777887654433 2334456678999994 3333 3
Q ss_pred CCCCCeEEEE
Q 010422 327 VTIPGIKYVI 336 (511)
Q Consensus 327 vdip~v~~VI 336 (511)
++...+++||
T Consensus 169 ~~~~~~~~lV 178 (237)
T 3bor_A 169 LSPKWIKMFV 178 (237)
T ss_dssp SCSTTCCEEE
T ss_pred cCcccCcEEE
Confidence 5667777777
No 492
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=83.85 E-value=0.56 Score=42.47 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++|++|+||||++..++-.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999998776643
No 493
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=83.78 E-value=0.6 Score=39.22 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+++.|++|+|||+++..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999998777644
No 494
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=83.73 E-value=0.59 Score=39.07 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhchHHHHHhh
Q 010422 31 ILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 31 ~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.++++|++|+|||+++..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999998776643
No 495
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.68 E-value=3.2 Score=36.71 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=46.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEccCCCCHHHHHhhcCcCCCCCeEEEEeccc------ccc
Q 010422 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI------AET 325 (511)
Q Consensus 252 ~~~~~~LVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~------~~~ 325 (511)
..+.++||.+|++.-+.++++.+.+.... .+..+..++|+.+..++...+. ..+|+|+|.- ...
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~~~~~ 149 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRR 149 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECC----------CT-----TCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHhcCC-----CCCEEEECHHHHHHHHHhC
Confidence 34568999999999999999888775332 2566788899887665544332 2689999962 133
Q ss_pred CCCCCCeEEEE
Q 010422 326 SVTIPGIKYVI 336 (511)
Q Consensus 326 Gvdip~v~~VI 336 (511)
..+...+++||
T Consensus 150 ~~~~~~~~~iV 160 (224)
T 1qde_A 150 RFRTDKIKMFI 160 (224)
T ss_dssp SSCCTTCCEEE
T ss_pred CcchhhCcEEE
Confidence 55667777776
No 496
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=83.49 E-value=0.94 Score=40.60 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=24.9
Q ss_pred cCC-EEEEEcCCCCchhchHHHHHhhccccCCCeEEEEeCc
Q 010422 28 KND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (511)
Q Consensus 28 ~~~-~~~i~apTGsGKTt~~~~~l~~~~~~~~~~~i~~~~p 67 (511)
+|+ ++++.++.|+||||++............+..++.+-|
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 455 5888999999999886555544332212334555555
No 497
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=83.48 E-value=0.54 Score=52.21 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhchHHHH
Q 010422 29 NDILIIVGETGSGKTTQLPQF 49 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~ 49 (511)
|+.++|+||+||||||++-++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 789999999999999887655
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.39 E-value=0.59 Score=41.39 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCchhchHHHHHhh
Q 010422 30 DILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 30 ~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
-.++++|++|+|||+++..+...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999998766644
No 499
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.38 E-value=0.62 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhchHHHHHhh
Q 010422 29 NDILIIVGETGSGKTTQLPQFLFH 52 (511)
Q Consensus 29 ~~~~~i~apTGsGKTt~~~~~l~~ 52 (511)
.+-+++.||+|||||+++-.+..+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999776544443
No 500
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=83.22 E-value=1.1 Score=39.75 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=20.9
Q ss_pred cCCEEEEEcCCCCchhchHHHHHhhc
Q 010422 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (511)
Q Consensus 28 ~~~~~~i~apTGsGKTt~~~~~l~~~ 53 (511)
+-..++++|++|+||||++..++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999987777553
Done!