Query 010424
Match_columns 511
No_of_seqs 85 out of 115
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 00:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12899 Glyco_hydro_100: Alka 100.0 1E-150 2E-155 1144.7 20.5 303 192-501 1-303 (436)
2 PLN03005 beta-fructofuranosida 100.0 4E-139 1E-143 1077.7 23.2 315 182-501 77-391 (550)
3 PLN02973 beta-fructofuranosida 100.0 8E-139 2E-143 1077.6 20.8 313 183-501 100-412 (571)
4 PLN02703 beta-fructofuranosida 100.0 9E-138 2E-142 1075.2 23.3 321 181-501 124-444 (618)
5 PF06202 GDE_C: Amylo-alpha-1, 99.5 2.9E-13 6.2E-18 135.5 13.6 169 225-430 28-211 (370)
6 TIGR01561 gde_arch glycogen de 99.4 2.2E-12 4.7E-17 137.6 13.5 170 225-432 290-472 (575)
7 COG3408 GDB1 Glycogen debranch 99.2 1.3E-10 2.8E-15 125.5 12.2 173 225-431 282-464 (641)
8 TIGR01577 oligosac_amyl oligos 99.0 5.4E-09 1.2E-13 110.9 16.8 200 192-431 253-460 (616)
9 TIGR01531 glyc_debranch glycog 98.7 4.7E-08 1E-12 113.2 11.4 181 211-431 1022-1275(1464)
10 PF04685 DUF608: Protein of un 97.9 1.5E-05 3.2E-10 81.3 6.1 111 312-430 97-212 (365)
11 PF05592 Bac_rhamnosid: Bacter 97.7 0.0002 4.4E-09 73.7 10.6 200 186-434 115-324 (509)
12 TIGR01535 glucan_glucosid gluc 96.9 0.044 9.5E-07 60.7 17.3 188 195-431 251-449 (648)
13 PF00723 Glyco_hydro_15: Glyco 96.5 0.038 8.2E-07 56.9 12.7 211 193-438 3-244 (448)
14 COG3387 SGA1 Glucoamylase and 94.9 0.67 1.5E-05 51.2 14.9 187 208-429 261-461 (612)
15 PRK10137 alpha-glucosidase; Pr 93.9 2.4 5.1E-05 48.7 16.6 137 195-352 308-457 (786)
16 PF06824 DUF1237: Protein of u 93.4 0.26 5.6E-06 52.8 7.8 224 205-448 29-296 (424)
17 KOG3625 Alpha amylase [Carbohy 56.7 17 0.00036 43.6 5.1 147 222-402 1076-1287(1521)
18 COG4759 Uncharacterized protei 45.7 15 0.00033 38.5 2.5 41 346-388 109-158 (316)
19 COG3459 Cellobiose phosphoryla 36.4 2.4E+02 0.0053 34.2 10.2 170 231-442 615-810 (1056)
20 PF05164 ZapA: Cell division p 30.2 97 0.0021 25.0 4.4 45 380-424 42-88 (89)
21 PF07849 DUF1641: Protein of u 23.6 61 0.0013 24.5 1.9 17 336-352 20-36 (42)
22 TIGR01507 hopene_cyclase squal 23.3 1.1E+03 0.025 26.7 13.2 150 185-381 333-496 (635)
23 PF06858 NOG1: Nucleolar GTP-b 22.8 72 0.0016 26.3 2.3 25 370-395 19-43 (58)
24 PRK13271 treA trehalase; Provi 21.6 1.6E+02 0.0034 33.3 5.3 69 188-258 121-190 (569)
25 PRK10015 oxidoreductase; Provi 20.2 54 0.0012 34.2 1.4 98 361-473 296-396 (429)
No 1
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=100.00 E-value=9.8e-151 Score=1144.71 Aligned_cols=303 Identities=66% Similarity=1.180 Sum_probs=296.7
Q ss_pred HHHHHHHHhhhhcCCcccEEEeecCCCCCCCCCCCceeeccChHHHHHHHhcCChHHHHHHHHHHhhccccceeccccCC
Q 010424 192 EAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSP 271 (511)
Q Consensus 192 eAwelL~~SlV~y~g~PVGTvAA~D~~~~~~LNYdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~ 271 (511)
||||+||+|+|+|+|+|||||||.||+.+++|||||||+||||||||+|||+||+|||||||++||+||||||++|||++
T Consensus 1 ~a~~~l~~s~v~~~g~pvGtvAa~d~~~~~~lNY~qvF~RDfvps~l~fL~~g~~eIVrnFL~~tl~Lq~~~~~~d~~~~ 80 (436)
T PF12899_consen 1 EAWELLERSIVYYQGQPVGTVAALDPSAEEALNYDQVFVRDFVPSALAFLMKGEPEIVRNFLLETLQLQSWEKQVDCFKP 80 (436)
T ss_pred ChHHHHhhheEeeCCceeeeeeecCCcccccccccceEeecChHHHHHHHHcCCHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 69999999999999999999999999877899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcccccccccchhHHHHHHHHHHh
Q 010424 272 GQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNL 351 (511)
Q Consensus 272 g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~~p~vQrGIrlIL~L 351 (511)
|+|+|||||||++++ ++|+|+|||||+|||||||||||||||||||||+|+|||++|+++||||+||||||+|
T Consensus 81 g~G~mPaSFkv~~~~-------~~e~l~aDfGe~AIgRv~pVDs~~WWiillraY~k~tgD~s~~~~~~~Q~gi~liL~l 153 (436)
T PF12899_consen 81 GRGVMPASFKVLHEN-------EEETLIADFGERAIGRVAPVDSGLWWIILLRAYVKATGDYSLAESPEVQRGIRLILDL 153 (436)
T ss_pred CCCcccceEEEecCC-------CCceEecCcchhhhccccCcccccHHHHHHHHHHHHhcchhhhhcHHHHHHHHHHHHH
Confidence 999999999998644 4789999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCceeeecCCcccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhccccc
Q 010424 352 CLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVD 431 (511)
Q Consensus 352 cL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYWlD 431 (511)
||+++||||||||||||||||||||||||||||||||||+|||||++||++++++++++++|++||++|++|||+|||||
T Consensus 154 cL~~~Fd~~PtLlvpDg~~MiDRrMgv~G~PlEiQ~Lf~~aLr~a~~ll~~~~~~~~~~~~i~~rl~~L~~h~r~~yWld 233 (436)
T PF12899_consen 154 CLADGFDMFPTLLVPDGACMIDRRMGVYGHPLEIQALFYMALRCARELLKPDEEGKDLIERIDKRLHALSFHIREYYWLD 233 (436)
T ss_pred HcccccCCCceEEecCCceeecccccccCCcchHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred ccchhhhhccCccccchhhhcccccCCCCCcchhhcccCCCCceeeeeecCCccceeeeeeccccccCCC
Q 010424 432 MKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSYGSSP 501 (511)
Q Consensus 432 ~~~ln~IyRykTEEYs~~a~NkFNI~PdsIP~Wl~dwlp~~GGYliGNl~P~rmDFRfFsLGNll~~~~~ 501 (511)
+++||+|||||||||||+|+|||||||||||+||+||||++||||+|||+|+|||||||+|||+||-.|.
T Consensus 234 ~~~ln~iyr~~teey~~~a~N~fNi~p~~ip~wl~dwlp~~gGY~ignv~P~~~dfRff~lGNlLAiLsg 303 (436)
T PF12899_consen 234 LKRLNEIYRYKTEEYGHTAVNKFNIYPDSIPDWLFDWLPEKGGYFIGNVSPARMDFRFFSLGNLLAILSG 303 (436)
T ss_pred HHHHHHHHhccHhhhhhhhhhcccCCcccchHHHHHhcccCCceeEeeccccccceeehhhhhHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997664
No 2
>PLN03005 beta-fructofuranosidase
Probab=100.00 E-value=4.5e-139 Score=1077.66 Aligned_cols=315 Identities=55% Similarity=0.973 Sum_probs=305.7
Q ss_pred cccccchHHHHHHHHHHHhhhhcCCcccEEEeecCCCCCCCCCCCceeeccChHHHHHHHhcCChHHHHHHHHHHhhccc
Q 010424 182 TESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQS 261 (511)
Q Consensus 182 ~~~~~~~l~~eAwelL~~SlV~y~g~PVGTvAA~D~~~~~~LNYdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs 261 (511)
...+.|+++++||++||+|||+|||+|+|||||.|+...+++||+|||+||||||||+||++||+|||||||++||+||+
T Consensus 77 ~~~~~~~~~~~a~~~l~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qvF~RDfvpsaLafLl~Ge~eIVrnFl~~~L~Lq~ 156 (550)
T PLN03005 77 NSFEPHPMMAEAWEALRRSMVFFRGQPVGTLAAVDNTTDEVLNYDQVFVRDFVPSALAFLMNGEPDIVKHFLLKTLQLQG 156 (550)
T ss_pred CCCCCCcHHHHHHHHHHhheEEECCccceeeeecCCccccccCCCceeecccHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 35788999999999999999999999999999999865467999999999999999999999999999999999999999
Q ss_pred cceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcccccccccchhH
Q 010424 262 WEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDV 341 (511)
Q Consensus 262 ~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~~p~v 341 (511)
|||++||||+|+|+|||||||+++|+++ +|+|+||||++||||||||||+||||||||||+|+|||++|+++|+|
T Consensus 157 ~ek~~d~~q~g~G~mPaSfkv~~~p~~~-----~~~l~aDfG~~aIGRv~pVDS~LWWIIllraY~k~tgD~s~~e~pev 231 (550)
T PLN03005 157 WEKRVDRFKLGEGVMPASFKVLHDPIRE-----TDNIVADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLTLSETPEC 231 (550)
T ss_pred hhhhhhcccCCCCCcCceeeecccccCC-----CccccccccccccccccccchhhHHHHHHHHHHhhccchhhhhChHH
Confidence 9999999999999999999999998654 46799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCceeeecCCcccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHH
Q 010424 342 QTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALS 421 (511)
Q Consensus 342 QrGIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs 421 (511)
|+||+|||+|||+++|||||||+||||||||||||||||||||||||||+|||||++||++++++++++++|.+||+||+
T Consensus 232 Qrgi~lil~lcLa~~Fd~~ptLlvpDgs~miDRrMgv~G~pLeiQaLfy~ALR~~~~~L~~~~~~~~~i~~i~~rl~~L~ 311 (550)
T PLN03005 232 QKGMKLILSLCLAEGFDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRSALSMLKPDGDGREFIERIVKRLHALS 311 (550)
T ss_pred HHHHHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccccccchhhhhccCccccchhhhcccccCCCCCcchhhcccCCCCceeeeeecCCccceeeeeeccccccCCC
Q 010424 422 FHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSYGSSP 501 (511)
Q Consensus 422 ~hir~yYWlD~~~ln~IyRykTEEYs~~a~NkFNI~PdsIP~Wl~dwlp~~GGYliGNl~P~rmDFRfFsLGNll~~~~~ 501 (511)
+|||+|||||++++|+|||||||||||+|+|||||||||||+||+||||++||||+|||+|+|||||||+|||+||-.|.
T Consensus 312 ~h~r~yyWld~~~ln~iyr~kteey~~~a~NkfNi~pd~ip~wl~dwlp~~gGY~igNv~pa~~dfRffslGNllAILs~ 391 (550)
T PLN03005 312 FHMRNYFWLDHQNLNDIYRFKTEEYSHTAVNKFNVMPDSIPEWVFDFMPLRGGYFVGNVGPAHMDFRWFALGNCVSILSS 391 (550)
T ss_pred HHHHHheecchhhhhhhhhccHhhhchhhhhccccCCccchhhhhhhcccCCceeeeecccccCCceehhhhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986654
No 3
>PLN02973 beta-fructofuranosidase
Probab=100.00 E-value=8.5e-139 Score=1077.62 Aligned_cols=313 Identities=57% Similarity=1.010 Sum_probs=305.1
Q ss_pred ccccchHHHHHHHHHHHhhhhcCCcccEEEeecCCCCCCCCCCCceeeccChHHHHHHHhcCChHHHHHHHHHHhhcccc
Q 010424 183 ESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSW 262 (511)
Q Consensus 183 ~~~~~~l~~eAwelL~~SlV~y~g~PVGTvAA~D~~~~~~LNYdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ 262 (511)
+.+.|+++++||++||+|||+|||+|||||||.||+ ++++||+|||+||||||||+||++||+|||||||++||+||+|
T Consensus 100 ~~~~~~~~~~aw~~l~~s~v~~~g~pvgtvAa~d~~-~~~lNY~qVFiRDfVpsaLafLl~Ge~eIVrnFl~~TL~lq~~ 178 (571)
T PLN02973 100 GFESHPMVGEAWDALRRSMVYFRGQPVGTIAAVDNS-EEKLNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLRLQSW 178 (571)
T ss_pred cCCCCcHHHHHHHHHHhheEEECCeeeeeeeccCCc-cccccCcchhhhccHHHHHHHHHCCCHHHHHHHHHHHHhhhhh
Confidence 467899999999999999999999999999999985 4799999999999999999999999999999999999999999
Q ss_pred ceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcccccccccchhHH
Q 010424 263 EKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQ 342 (511)
Q Consensus 263 ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~~p~vQ 342 (511)
||+|||||+|+|+|||||||+++|+++ +|+++||||++||||||||||+||||||||||+|+|||++|+++|+||
T Consensus 179 ektld~~q~g~G~mPaSfkv~~~p~~~-----~e~l~aDfG~~aIGRV~pVDS~LWWIIllraY~k~TgD~s~~e~pevQ 253 (571)
T PLN02973 179 EKKIDRFQLGEGVMPASFKVFHDPVRN-----HETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLADMPECQ 253 (571)
T ss_pred HHHHHhcccCCCCcCceeeecccccCc-----cccccccccccccccccccchhhHHHHHHHHHHHhccchhhhhcHHHH
Confidence 999999999999999999999998654 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCceeeecCCcccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHH
Q 010424 343 TGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSF 422 (511)
Q Consensus 343 rGIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~ 422 (511)
+||+|||+|||+++|||||||+||||||||||||||||||||||||||+|||||++||++++++++++++|++||++|++
T Consensus 254 rgi~lil~lcL~~~Fd~~ptLlVpDgs~miDrrMgv~G~pLeiQaLfy~ALR~a~~~L~~~~~~~~~i~~i~~rl~~L~~ 333 (571)
T PLN02973 254 KGIRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALLLLKHDGEGKEMVEQIVKRLHALSY 333 (571)
T ss_pred HHHHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccchhhhhccCccccchhhhcccccCCCCCcchhhcccCCCCceeeeeecCCccceeeeeeccccccCCC
Q 010424 423 HVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSYGSSP 501 (511)
Q Consensus 423 hir~yYWlD~~~ln~IyRykTEEYs~~a~NkFNI~PdsIP~Wl~dwlp~~GGYliGNl~P~rmDFRfFsLGNll~~~~~ 501 (511)
|||+|||+|++++|+|||||||||||+|+|||||||||||+||+||||++||||+|||+|+|||||||+|||+||-.+.
T Consensus 334 hir~~ywld~~~ln~iyRykteey~~~a~NkfNi~p~sip~wl~dwlp~~gGY~igNv~Pa~~DfRffslGNllAILs~ 412 (571)
T PLN02973 334 HMRSYFWLDLKQLNDIYRYKTEEYSHTAVNKFNVIPDSLPEWVFDFMPPHGGFFIGNVSPARMDFRWFALGNCIAILSS 412 (571)
T ss_pred HHHHHHhcCHHHhhhHhhcchhhcchhhhhhccCCccccchhhhhhccCCCceeeeecccccCCcchhhhhhHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986554
No 4
>PLN02703 beta-fructofuranosidase
Probab=100.00 E-value=9.2e-138 Score=1075.16 Aligned_cols=321 Identities=73% Similarity=1.253 Sum_probs=313.3
Q ss_pred ccccccchHHHHHHHHHHHhhhhcCCcccEEEeecCCCCCCCCCCCceeeccChHHHHHHHhcCChHHHHHHHHHHhhcc
Q 010424 181 ETESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQ 260 (511)
Q Consensus 181 ~~~~~~~~l~~eAwelL~~SlV~y~g~PVGTvAA~D~~~~~~LNYdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQ 260 (511)
....+.++++++||+|||+|||+|||+|+|||||.|+...+++||+|||+||||||||+||++||+|||||||++||+||
T Consensus 124 ~~~~~~~~~~~eA~elL~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qVFiRDfVpsaLafLl~Ge~eIVrnFl~~tL~lq 203 (618)
T PLN02703 124 AQSVGTKSIEDEAWDLLRQSVVFYCGSPIGTIAANDPSSTSVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILYTLQLQ 203 (618)
T ss_pred ccccCCChHHHHHHHHHHHhhhhhcCccceeEeccCCccccccCCCceeecccHHHHHHHHHCCCHHHHHHHHHHHHhhh
Confidence 44677899999999999999999999999999999986546799999999999999999999999999999999999999
Q ss_pred ccceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcccccccccchh
Q 010424 261 SWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVD 340 (511)
Q Consensus 261 s~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~~p~ 340 (511)
+|||+|||||+|+|+|||||||+++|++++++.+||+|+|||||+|||||+||||+||||||||||+|+|||++|+++|+
T Consensus 204 ~~ektld~~q~g~G~mPaSfkv~~~~~~~~~~~~ee~l~aDfGe~AIgRV~pVDS~LWWIIllraY~k~TgD~sf~e~~~ 283 (618)
T PLN02703 204 SWEKTMDCHSPGQGLMPCSFKVKTVPLDGDDSMTEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCTGDLSVQERVD 283 (618)
T ss_pred hhHHHHHhccCCCCCcCceeeecccccccccccccccccCCcCccceeeeccccchhHHHHHHHHHHHhhccHHHhhhhh
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCceeeecCCcccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHH
Q 010424 341 VQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSAL 420 (511)
Q Consensus 341 vQrGIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aL 420 (511)
||+||++||+|||+++|||||||+||||||||||||||||||||||||||+|||||++||++++++++++++|.+||++|
T Consensus 284 ~Q~gI~liL~LcLa~~Fd~fPtLlVpDgs~miDRrMgv~G~PLEiQaLfy~ALR~a~~~L~~~~~~~e~i~~i~~rl~~L 363 (618)
T PLN02703 284 VQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALVCAREMLTPEDGSVDLIRALNNRLVAL 363 (618)
T ss_pred HHHHHHHHHHHHccCcCCCCceEeccCCCchhccccCcCCccHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccccccchhhhhccCccccchhhhcccccCCCCCcchhhcccCCCCceeeeeecCCccceeeeeeccccccCC
Q 010424 421 SFHVREYYWVDMKKINEIYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEGGYLIGNLEPVHGHITMVDLGQHSYGSS 500 (511)
Q Consensus 421 s~hir~yYWlD~~~ln~IyRykTEEYs~~a~NkFNI~PdsIP~Wl~dwlp~~GGYliGNl~P~rmDFRfFsLGNll~~~~ 500 (511)
++|||+|||+|+++||+|||||||||||+|+||||||||+||+||+||||++||||||||+|+|||||||+|||+||-.+
T Consensus 364 ~~hir~~yWld~~~ln~iyRykteey~~~A~NkfNi~p~siP~WL~dwlp~~gGYligNv~Pa~mDfRffsLGNlLAILs 443 (618)
T PLN02703 364 NFHIREYYWLDLKKINEIYRYQTEEYSYDAVNKFNIYPDQIPSWLVDFMPNRGGYLIGNLQPAHMDFRFFTLGNLWSIVS 443 (618)
T ss_pred HHHHHHHHhhcHHHhhHHHhhhhhhcchhhhhhcccCCCCcchHhhhhccccCceeeeeecccccccchhhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred C
Q 010424 501 P 501 (511)
Q Consensus 501 ~ 501 (511)
.
T Consensus 444 ~ 444 (618)
T PLN02703 444 S 444 (618)
T ss_pred c
Confidence 4
No 5
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=99.49 E-value=2.9e-13 Score=135.54 Aligned_cols=169 Identities=24% Similarity=0.364 Sum_probs=114.5
Q ss_pred CCceeeccChHHHH-HHHhcCChHHHHHHHHHHhhccccceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcC
Q 010424 225 YDQVFIRDFVPSAL-AFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFG 303 (511)
Q Consensus 225 YdqVFiRDfVPsaL-afLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFG 303 (511)
|.. |.||-.++.= .+|..|.++..|+.|....+.|. .|.||-.+.. .-.+.||
T Consensus 28 F~~-~GRDt~Isl~gl~l~~~~~~~a~~~L~~~~~~~~-----------~G~ipn~~~~--------------~~~~~Y~ 81 (370)
T PF06202_consen 28 FST-WGRDTFISLPGLLLSPGRFEEARNILATFAGTQR-----------HGLIPNELRD--------------GEEPRYN 81 (370)
T ss_pred ccc-cccHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-----------cCcccCcccC--------------CCCCCCC
Confidence 445 9999988621 35788999999998887766443 8999999851 1234465
Q ss_pred CcccccccccCCccHHHHHHHHHhhccccccccc--chhHHHHHHHHHHhhhcCCCCCC-ceeeecC-----Cccccccc
Q 010424 304 ESAIGRVAPVDSGLWWIILLRAYGKITGDYALQE--RVDVQTGIRLILNLCLTDGFDMF-PSLLVTD-----GSCMIDRR 375 (511)
Q Consensus 304 e~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~--~p~vQrGIrlIL~LcL~~~Fd~f-PtLlVpD-----Gs~MIDRr 375 (511)
.||+++|||+++.-|.+.|||.++.+ -|.++..|+.+.+--- .+..+. .+-|+.- .-.|.|-.
T Consensus 82 --------s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~-~~~~~d~~~gl~~~~~~~~~~tWmD~~ 152 (370)
T PF06202_consen 82 --------SVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTD-FGIRVDPEDGLIYSGNGLNNQTWMDAR 152 (370)
T ss_pred --------CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCC-CccccccCCCeeecCCCCCCCCccccc
Confidence 38999999999999999999999985 4555555555432100 011222 1222222 22333311
Q ss_pred ------ccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhcccc
Q 010424 376 ------MGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWV 430 (511)
Q Consensus 376 ------MgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYWl 430 (511)
....|+|.|||+|+|.||+++.+|.+...+ + ......++-..|+..+.++||.
T Consensus 153 ~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~-~-~a~~~~~~A~~lk~~F~~~FW~ 211 (370)
T PF06202_consen 153 NDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGD-E-LAARYREWAERLKESFEKRFWD 211 (370)
T ss_pred cCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCC-c-hHHHHHHHHHHHHHHHHHHHcC
Confidence 112468899999999999999999884332 2 5555666666688888999998
No 6
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=99.40 E-value=2.2e-12 Score=137.58 Aligned_cols=170 Identities=21% Similarity=0.236 Sum_probs=115.5
Q ss_pred CCceeeccChHHHHHHHh-cCChHHHHHHHHHHhhccccceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcC
Q 010424 225 YDQVFIRDFVPSALAFLL-NGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFG 303 (511)
Q Consensus 225 YdqVFiRDfVPsaLafLl-~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFG 303 (511)
+=.+|.||-.+|.-.+++ .|++|..|+-|....+.+ .+|+||-.|. + ..-+|-|+
T Consensus 290 wF~~WGRDt~Isl~Gl~l~tgr~~~A~~iL~~fa~~~-----------~~GliPN~~~-------~------~g~~p~Yn 345 (575)
T TIGR01561 290 WFDDWGRDSFISLEGLLLIDKQFDEAKEAILKFANLC-----------KRGLIPNNFI-------A------FGGDPIYN 345 (575)
T ss_pred hhccchhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh-----------HCCCCCCccC-------C------CCCCccCC
Confidence 445799999999987766 889999999777665532 3899999993 1 11236665
Q ss_pred CcccccccccCCccHHHHHHHHHhhccccccccc--chhHHHHHHHHHHhhhcCCCC--CCc-eee-ecCCcccccccc-
Q 010424 304 ESAIGRVAPVDSGLWWIILLRAYGKITGDYALQE--RVDVQTGIRLILNLCLTDGFD--MFP-SLL-VTDGSCMIDRRM- 376 (511)
Q Consensus 304 e~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~--~p~vQrGIrlIL~LcL~~~Fd--~fP-tLl-VpDGs~MIDRrM- 376 (511)
.||++||||++++.|.+.|||..+.+ .|.++.-|+. .+...+|. |.+ -|+ ..+.-.|.|-++
T Consensus 346 --------tvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~---y~~G~~~~i~~d~dGLi~~g~~lTWMDa~~g 414 (575)
T TIGR01561 346 --------GVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDN---YCAGNDFAIGMDNDLIFHKGAPLTWMDAKVD 414 (575)
T ss_pred --------CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---HhcCCCcEEEECCCccEeCCCCCCCCCCCCC
Confidence 49999999999999999999988764 3443333332 33344443 223 222 222233555433
Q ss_pred -----cccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhcccccc
Q 010424 377 -----GIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDM 432 (511)
Q Consensus 377 -----gV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYWlD~ 432 (511)
.+.|+|.|||||||.||+.+.+|.+...+. .....+.-..|+.-+.++||..-
T Consensus 415 ~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~---a~~y~~~A~~lk~~F~~~FW~~~ 472 (575)
T TIGR01561 415 ERAVTPRAGAACEINALWYNALKTAEFLGNELGED---AESLEEKAAGVAKNFAEKFINPD 472 (575)
T ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHHHHHhcCCCC
Confidence 379999999999999999999998754332 12233333446677789999864
No 7
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.3e-10 Score=125.48 Aligned_cols=173 Identities=25% Similarity=0.333 Sum_probs=129.0
Q ss_pred CCceeeccChHHHHHHHhcCChHHHHHHHHHHhhccccceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCC
Q 010424 225 YDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGE 304 (511)
Q Consensus 225 YdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe 304 (511)
|. +|.||..+|++++|+-|++|+.|.=|.+.++. --.|.||-.| +. +--.++=||
T Consensus 282 F~-~fGRD~lIS~lgll~~g~~elArg~L~~~a~~-----------~~~GkIPhe~-----~~-------~~~~~~~Y~- 336 (641)
T COG3408 282 FS-PFGRDTLISALGLLLVGRFELARGTLNTLARY-----------SEPGKIPHEI-----LL-------SIPGEPYYN- 336 (641)
T ss_pred cc-ccchHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----------ccCCCCcchh-----hh-------cCCCcceec-
Confidence 55 99999999999999999999999988777774 2489999888 10 001334454
Q ss_pred cccccccccCCccHHHHHHHHHhhccccccccc--chhHHHHHHHHHHhhhcCCCCCCceeeecCCc--cccc------c
Q 010424 305 SAIGRVAPVDSGLWWIILLRAYGKITGDYALQE--RVDVQTGIRLILNLCLTDGFDMFPSLLVTDGS--CMID------R 374 (511)
Q Consensus 305 ~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~--~p~vQrGIrlIL~LcL~~~Fd~fPtLlVpDGs--~MID------R 374 (511)
+||+.+|||+++.+|.+.|||..+.+ .|.++.++++|+..-=.. |+++-..+-.+|+ .|.| .
T Consensus 337 -------tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~~~~~~-~~~~~~~l~~~~~~~tW~Ds~~~~~~ 408 (641)
T COG3408 337 -------TVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILKGFDFG-FDTYGDGLLEGGSNQTWMDSGDDIFA 408 (641)
T ss_pred -------cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCcc-ceecCcccccCCCCCCCeecCCcccc
Confidence 69999999999999999999999977 788999999888544333 7788888887644 3444 3
Q ss_pred cccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhccccc
Q 010424 375 RMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVD 431 (511)
Q Consensus 375 rMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYWlD 431 (511)
.|+..|-|++|++|+|.|+.++..+...-. ..+..+...+.+..|.+-..+.||..
T Consensus 409 ~~~~~g~pi~i~al~~~~~~a~~~~a~ll~-~~~~~~~~~~~a~~l~~~F~~~fw~~ 464 (641)
T COG3408 409 VTPRAGKPVAINALQYYALKAALRLANLLG-DEEDAARLEKIARRLKESFEAKFWNP 464 (641)
T ss_pred ccCCCCCceeHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHhhCc
Confidence 455678899999998888888877766543 22233444444444556678889985
No 8
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=99.04 E-value=5.4e-09 Score=110.86 Aligned_cols=200 Identities=20% Similarity=0.176 Sum_probs=130.8
Q ss_pred HHHHHHHHhhhhc---CCcc-cEEEeecCCCCCCCCC--CCceeeccChHHHHHHHhcCChHHHHHHHHHHhhcccccee
Q 010424 192 EAWKLLRDAVVNY---CGNP-VGTVAANNPADKQPLN--YDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKT 265 (511)
Q Consensus 192 eAwelL~~SlV~y---~g~P-VGTvAA~D~~~~~~LN--YdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~ 265 (511)
+-|+++++|+..+ ...+ -+.|||.+.+.....| |.-||.||.+-+++||+..|.+|.++.|+.-+++.|.
T Consensus 253 ~~~~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~~~a~~~l~~l~~~q~---- 328 (616)
T TIGR01577 253 KIYSLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYHDRVDRFFRWAMQTQS---- 328 (616)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCHHHHHHHHHHHHHhhC----
Confidence 5577888886655 2333 4677776643222334 9999999999999999999999999999999998765
Q ss_pred ccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhccccccccc--chhHHH
Q 010424 266 VDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQE--RVDVQT 343 (511)
Q Consensus 266 lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~--~p~vQr 343 (511)
..|-.|..+-+ ++...........| .+|. -|| +++.|.+.|||..+.+ .+.+++
T Consensus 329 ------~~G~~~~~~~~-----dG~~~~~~~~~Q~D----~~g~------~l~---al~~y~~~t~d~~~~~~~~~~v~~ 384 (616)
T TIGR01577 329 ------RDGSWQQRYYL-----NGRLAPLQWGLQID----ETGS------ILW---AMDQHYRLTNDRAFLEEIWESVQK 384 (616)
T ss_pred ------cCCCcceEEec-----CCCCCCCCCCcccc----chhH------HHH---HHHHHHHHHCCHHHHHHHHHHHHH
Confidence 24555555532 22110000011112 1222 233 7788999999998854 455555
Q ss_pred HHHHHHHhhhcCCCCCCceeeecCCcccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHh
Q 010424 344 GIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFH 423 (511)
Q Consensus 344 GIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~h 423 (511)
+++.+++. .-.. |-.||-..|=. .+|++.+..+++|.||++|.+|.+...+ .+..++..+.-..++..
T Consensus 385 a~~fl~~~----~~~~---l~~~~~~lWEe----r~G~~~~t~a~~~aAL~~aa~lA~~lGd-~~~a~~~~~~Ad~ik~~ 452 (616)
T TIGR01577 385 AAQYLILF----IDPE---TPLPCRDLWEE----REGVFTYTASAVYGGLDAAAAVADKLGE-KRLAQNWKKAAEFIKRA 452 (616)
T ss_pred HHHHHHHh----ccCC---CCCCCCcccee----cCCccCccHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHH
Confidence 55555542 2111 22255444443 3588899999999999999999987544 34556666666678888
Q ss_pred hhhccccc
Q 010424 424 VREYYWVD 431 (511)
Q Consensus 424 ir~yYWlD 431 (511)
|++++|.+
T Consensus 453 i~~~~w~~ 460 (616)
T TIGR01577 453 VEERFWLP 460 (616)
T ss_pred HHHhccCC
Confidence 99999974
No 9
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=98.74 E-value=4.7e-08 Score=113.20 Aligned_cols=181 Identities=22% Similarity=0.296 Sum_probs=117.0
Q ss_pred EEeecCCCCCCCCCCCceeeccChHHHHH-HHhcCChHHHHHHHHHHhhccccceeccccCCCCCcccccEEEeeecCCC
Q 010424 211 TVAANNPADKQPLNYDQVFIRDFVPSALA-FLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDG 289 (511)
Q Consensus 211 TvAA~D~~~~~~LNYdqVFiRDfVPsaLa-fLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~g~GvmPASFKV~~~p~~~ 289 (511)
+|||-=|- =+..|-.||.||-.+|.=. +|..|++|..|+-|+.... . .-+|+||-.|.
T Consensus 1022 si~AGyPw--F~tg~mr~WGRDTfISLrGLlL~tGR~~eAk~ii~~fa~---~--------lr~GLIPNll~-------- 1080 (1464)
T TIGR01531 1022 SLAAGLPH--FSVGYMRCWGRDTFIALRGMLLTTGRFDEARAIILAFAG---T--------LRHGLIPNLLD-------- 1080 (1464)
T ss_pred eEEecCCc--cccCcccccchhheeecCcceeccCCHHHHHHHHHHHHH---H--------HHcCCCCCCCC--------
Confidence 55554332 2457889999999988766 6889999999997766554 1 23899998883
Q ss_pred CCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcccc-ccccc--------------------chhHHHHHHHH
Q 010424 290 GDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGD-YALQE--------------------RVDVQTGIRLI 348 (511)
Q Consensus 290 ~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD-~sl~~--------------------~p~vQrGIrlI 348 (511)
+.-.|-|- .+||.|||+-+++-|++.++| ..+.. ...+...|+=|
T Consensus 1081 ------~G~~prYN--------t~DA~lWfi~AIqdY~~~~~dg~~iL~~~v~R~fp~Ddt~~~~~~~~~~~l~~~iqeI 1146 (1464)
T TIGR01531 1081 ------EGINPRYN--------CRDAAWFWLQCIQDYVEIVPNGEKILKDPVRRIYPDDDSIPVDDGRADQYLFEVIYEA 1146 (1464)
T ss_pred ------CCCccccc--------CccHHHHHHHHHHHHHHHcCCHHHhhhccccccccccccccccchhHHHHHHHHHHHH
Confidence 11233342 599999999999999999998 34311 11233345544
Q ss_pred HHhhhcC-CC---------------CCCceeeecC-------------Cccccccccc--------------ccCcchhh
Q 010424 349 LNLCLTD-GF---------------DMFPSLLVTD-------------GSCMIDRRMG--------------IHGHPLEI 385 (511)
Q Consensus 349 L~LcL~~-~F---------------d~fPtLlVpD-------------Gs~MIDRrMg--------------V~G~PLEI 385 (511)
|..=..- .| +.|+.-+.-| +.-|.| .|| ..|+|.||
T Consensus 1147 l~~h~~G~~fRE~NAGp~iD~~M~deGfn~~I~vD~~~GLI~gGn~~ncgTWMD-kmg~SekA~~~G~p~TPRdG~aVEI 1225 (1464)
T TIGR01531 1147 LQKHFQGIQFRERNAGPQIDRVMTDEGFNVTIGVDWETGFIYGGNRFNCGTWMD-KMGESEKAGNKGIPATPRDGAAVEI 1225 (1464)
T ss_pred HHHHHcCCccccccccccchhhhccccccceEEEcCCCCcEecCCCCCCCCCcC-CCCcccccccCCcccCCCCCCceeH
Confidence 4332221 13 3444444444 234666 554 67888999
Q ss_pred HHHHHHHHHHHHHHhccc-----cCc---hhHHHHHHHHHHHHHHhhhhccccc
Q 010424 386 QSLFYSALRCSREMLIVN-----DGT---KNLVAAINNRLSALSFHVREYYWVD 431 (511)
Q Consensus 386 QaLFY~ALRca~eLL~~~-----~~~---~~~~~~i~~RL~aLs~hir~yYWlD 431 (511)
|||||.|||.+.+|-+.. ... ..+ ....+ .+.....++||+.
T Consensus 1226 naLwynAL~~~~~l~~~~~~~~~g~~~~~~~~-~~wa~---~ik~~Fe~~F~~~ 1275 (1464)
T TIGR01531 1226 VGLLKSALRFLIELKEKGVFKRSGVETQKWSY-IEWNQ---KIQDNFEKRFFVD 1275 (1464)
T ss_pred HHHHHHHHHHHHHHHHhcCcCcCCcccchhhH-HHHHH---HHHHHHhhhcCCC
Confidence 999999999999997642 111 112 22222 3456778999984
No 10
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=97.92 E-value=1.5e-05 Score=81.26 Aligned_cols=111 Identities=17% Similarity=0.169 Sum_probs=58.1
Q ss_pred ccCCccHHHHHHHHHhhccccccccc--chhHHHHHHHHHHhhhcCCCCCCceeeecCCcccccccc---cccCcchhhH
Q 010424 312 PVDSGLWWIILLRAYGKITGDYALQE--RVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRM---GIHGHPLEIQ 386 (511)
Q Consensus 312 pVDSgLWWiILLraY~k~TGD~sl~~--~p~vQrGIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRrM---gV~G~PLEIQ 386 (511)
=+|..+++|+.++.|.+.|||.+|.+ -|.|+++|+..+. ||..-.= +||+....|..+ .++|..-+..
T Consensus 97 ~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~------~D~d~dG-l~e~~g~~D~TyD~~~~~G~say~~ 169 (365)
T PF04685_consen 97 WKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS------WDRDGDG-LPENPGHPDQTYDDWSMYGPSAYCG 169 (365)
T ss_dssp --------------------------EHHHHHHHHHHHHHH------SB--TTS--BEEET---SSSTT-EEEEEEHHHH
T ss_pred cccccccccccccccccccccchhhhhHHHHHHHHHHHHHh------hCCCCCC-CCCCCCCCccccccCCeeCCCHHHH
Confidence 48999999999999999999999977 6999999987774 3221111 122332222222 2579899999
Q ss_pred HHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhcccc
Q 010424 387 SLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWV 430 (511)
Q Consensus 387 aLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYWl 430 (511)
.||+.||+++.+|.+.-.+ .+....-.+.+...+..+.+..|-
T Consensus 170 ~L~laAL~A~~emA~~lgd-~~~a~~y~~~~~~~~~~~~~~LWn 212 (365)
T PF04685_consen 170 GLWLAALRAAAEMAKILGD-PELAAKYRELAEKAKKAFNKKLWN 212 (365)
T ss_dssp HHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999987444 667788888888888889887773
No 11
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=97.73 E-value=0.0002 Score=73.67 Aligned_cols=200 Identities=20% Similarity=0.195 Sum_probs=123.2
Q ss_pred cchHHHHHHHHHHHhhhh-cCCcccEEEeecCCCCCCCCCCCceeeccChHHHHHH-HhcCChHHHHHHHHHHhhccccc
Q 010424 186 ASNIEKEAWKLLRDAVVN-YCGNPVGTVAANNPADKQPLNYDQVFIRDFVPSALAF-LLNGEGDIVKNFLLHTLQLQSWE 263 (511)
Q Consensus 186 ~~~l~~eAwelL~~SlV~-y~g~PVGTvAA~D~~~~~~LNYdqVFiRDfVPsaLaf-Ll~Ge~EIVrnFL~~tL~LQs~e 263 (511)
.++.+++-|+.=..++-. ..+.+ .|-+.- .=+..|.-|...++++. ...|+.+++|++|.....-|.
T Consensus 115 sd~~ln~i~~~~~~T~~~n~~~~~------~Dcp~R---dER~~w~GD~~~~~~~~~~~~~~~~l~~~~l~~~~~~q~-- 183 (509)
T PF05592_consen 115 SDPLLNRIWEMSRRTLRSNMQDVF------TDCPKR---DERLGWTGDARVSALTAYYSFGDAALYRKWLRDFADSQR-- 183 (509)
T ss_dssp S-HHHHHHHHHHHHHHHHTBSSSB-------SBTTT----T---BHHHHHHHHHHHHCCT--HHHHHHHHHHHHGGTT--
T ss_pred CcHHHHHHHHHHHHHHHhhCCCCc------eECcch---hhhcCCcchHHHHHHHHHHhCCcHHHHHHHHHHHHHhhc--
Confidence 467888888877766543 23332 243211 02456899999888765 566889999999998887553
Q ss_pred eeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhccccccccc--chhH
Q 010424 264 KTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQE--RVDV 341 (511)
Q Consensus 264 k~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~--~p~v 341 (511)
..|.+|.-. |.. . .+.-...|=++|||+.++-|-+.|||.++.+ -|.+
T Consensus 184 --------~~G~~p~~~-----P~~---------~--------~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~ 233 (509)
T PF05592_consen 184 --------PDGLLPSVA-----PSY---------G--------GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAM 233 (509)
T ss_dssp --------TSTT-SSBS-----S--------------------SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred --------ccCCceEEe-----ccc---------C--------CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 368888654 510 0 0011114457899999999999999999976 5555
Q ss_pred HHHHHHHHHhhhcCCCCCCceeeecCCccccccc------ccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHH
Q 010424 342 QTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRR------MGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINN 415 (511)
Q Consensus 342 QrGIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRr------MgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~ 415 (511)
++.|..+. ...-+ .|.-..+...+|-- ....+..+-.++++|.||+++.+|-+.-.+ ++-.+.-.+
T Consensus 234 ~~~l~~~~----~~~~~---~~~~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~-~~~a~~y~~ 305 (509)
T PF05592_consen 234 KRYLDYLE----RRVDD---GLDGLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGK-DEDAAEYRA 305 (509)
T ss_dssp HHHHHHHH----TTB-T---SSB-CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHH
T ss_pred HHHHHHHH----HhCCc---cccCCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 55555444 43333 22244555566622 244555677899999999999999987554 334677888
Q ss_pred HHHHHHHhhhhcccccccc
Q 010424 416 RLSALSFHVREYYWVDMKK 434 (511)
Q Consensus 416 RL~aLs~hir~yYWlD~~~ 434 (511)
|...|+.-|+++||-+-+.
T Consensus 306 ~a~~lk~a~~~~~~d~~~g 324 (509)
T PF05592_consen 306 RAERLKAAINRHFWDPEKG 324 (509)
T ss_dssp HHHHHHHHHHHHCEETTTT
T ss_pred HHHHHHHHHHHhccCcccC
Confidence 8888999999999954443
No 12
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=96.90 E-value=0.044 Score=60.69 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=110.4
Q ss_pred HHHHHhhhhc---CC--cccEEEeecCCCC----CCCCC--CCceeeccChHHHHHHHhcCChHHHHHHHHHHhhccccc
Q 010424 195 KLLRDAVVNY---CG--NPVGTVAANNPAD----KQPLN--YDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWE 263 (511)
Q Consensus 195 elL~~SlV~y---~g--~PVGTvAA~D~~~----~~~LN--YdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~e 263 (511)
+++++|+... .. .+-+.|||...+- ....| |.=||.||++-+|.||+.-|..|..+.|+.-+++.|.
T Consensus 251 ~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~~-- 328 (648)
T TIGR01535 251 SLYYVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGDVDSALRSLDYLAKVQQ-- 328 (648)
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCCHHHHHHHHHHHHHHhc--
Confidence 3455555544 23 3456777774321 23445 9999999999999999999999999999999999877
Q ss_pred eeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcccccccccchhHHH
Q 010424 264 KTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQT 343 (511)
Q Consensus 264 k~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~~p~vQr 343 (511)
..|-.|..+- ++++.. ..+ .=.|-.=..|.+++.+.+. |. .+...
T Consensus 329 --------~~G~~lq~y~-----vdG~~~---------~~~------iQlD~~g~~i~~~~~l~~~--~~-----~~~~~ 373 (648)
T TIGR01535 329 --------DNGMFPQNSW-----VDGKPY---------WTG------IQLDETAFPILLAYRLHRY--DH-----AFYDK 373 (648)
T ss_pred --------cCCCcCceec-----cCCCCC---------CCC------ccccHHHHHHHHHHHHHHc--Cc-----HHHHH
Confidence 2344444454 233221 100 1244443445566555443 22 33445
Q ss_pred HHHHHHHhhhcCCCCCCceeeecCCcccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHh
Q 010424 344 GIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFH 423 (511)
Q Consensus 344 GIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~h 423 (511)
.|+-+++.+...+ -.||-. |+==..|+--..-+--+.||.||.+|.+...+. +..++-.+--..++..
T Consensus 374 ~vk~aadfl~~~~-------p~p~~d----~WEer~g~~~~T~a~v~aaL~~Aa~iA~~~g~~-~~a~~w~~~Ad~i~~~ 441 (648)
T TIGR01535 374 MLKPAADFIVKNG-------PKTGQE----RWEEIGGYSPSTLAAEIAGLTAAADIAEQNGDA-GSAQKYRETADNWQKL 441 (648)
T ss_pred HHHHHHHHHHHcC-------CCCCCC----cccccCCcCchhHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence 5555555555543 234443 333344554444455559999999999875442 3333333333345666
Q ss_pred hhhccccc
Q 010424 424 VREYYWVD 431 (511)
Q Consensus 424 ir~yYWlD 431 (511)
|.++.|-.
T Consensus 442 i~~~~~~~ 449 (648)
T TIGR01535 442 IENWTFTT 449 (648)
T ss_pred HHHhCcCC
Confidence 77777765
No 13
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=96.51 E-value=0.038 Score=56.90 Aligned_cols=211 Identities=14% Similarity=0.163 Sum_probs=109.1
Q ss_pred HHHHHHHhhhhc----CCc-ccEEEeecCCCCCCCCCCCceeeccChHHHHHHHhcCCh------------H---HHHHH
Q 010424 193 AWKLLRDAVVNY----CGN-PVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNGEG------------D---IVKNF 252 (511)
Q Consensus 193 AwelL~~SlV~y----~g~-PVGTvAA~D~~~~~~LNYdqVFiRDfVPsaLafLl~Ge~------------E---IVrnF 252 (511)
+++++.+|+... .+. +-+.+||.+.+. + +|.=+|+||.+.++.+++..|.. . +.+.+
T Consensus 3 ~~~~~~rs~~~l~l~~~~~~~GaiiAsps~s~--p-dY~y~W~RD~a~~~~al~~~g~~~~~~~~~~~l~~~~~~~~~~~ 79 (448)
T PF00723_consen 3 YLDAVYRSALTLKLLTQEPITGAIIASPSTSL--P-DYRYCWVRDAAYTAYALWALGYRDEARAFFYELEQSLVKLMRGY 79 (448)
T ss_dssp HHHHHHHTBTTTHTTBTTSSTT-B-S-SSBSS--S-BTCSEEHHHHHHHHHHHHHHT-H--HHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCeEEeecccCC--C-CCceeecccHHHHHHHHHHhhhhHHHHHHHhhhhHhhhhhhhhh
Confidence 456666766643 333 455666666542 2 99999999999999999987722 2 33456
Q ss_pred HHHHhhccccceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcccc
Q 010424 253 LLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGD 332 (511)
Q Consensus 253 L~~tL~LQs~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~TGD 332 (511)
|....++|........++.+.|+=-.-|.+. ..+--|..|-||+- .|.-==.++++..|.+. |.
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~--------------~~~~~g~~~w~~~Q-~D~~gl~l~~l~~~~~~-g~ 143 (448)
T PF00723_consen 80 LQPMYRQQGKVNPSGEFQSPEGLHEPGYNVS--------------GPVRVGNPAWGRPQ-NDGPGLRLLALWQYIDS-GL 143 (448)
T ss_dssp HHHHHHHHTS-BTTB-TTTTGGGGTTEEETT--------------SEBTTS-B-ES--B-THHHHHHHHHHHHHHHT-TH
T ss_pred hhhhhhhcCccCCCccccCccccccceecCC--------------CCcccCchhccCcC-CCchHHHHHHHHHHHHc-CC
Confidence 7777777776444443433323333333311 11112333455543 56555566777777333 32
Q ss_pred ccccc-chh--HHHHHHHHHHhhhcCCCCCCceeeecCCcccccccccccCcchh--hHHHHHHHHHHHHHHhccccCch
Q 010424 333 YALQE-RVD--VQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLE--IQSLFYSALRCSREMLIVNDGTK 407 (511)
Q Consensus 333 ~sl~~-~p~--vQrGIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLE--IQaLFY~ALRca~eLL~~~~~~~ 407 (511)
.-... .+- +|..+..|..---.++||. +==++|..-. .-+-=+.||++|..++..... .
T Consensus 144 ~~~~~~~~~~~I~~~~~yi~~~w~~pd~dl---------------WEe~~g~~~f~~S~~~~~~AL~~a~~~a~~~g~-~ 207 (448)
T PF00723_consen 144 QIIYTYWEVSFIKNDLDYIERNWREPDFDL---------------WEERNGIHFFTASSAMQWAALLRAANLAELFGD-P 207 (448)
T ss_dssp HHHHTHHHHHTHHHHHHHHHHHTTSBEE-T---------------TSS-EEEEHH--HHHHHHHHHHHHHHHHHHTT--H
T ss_pred CcccccchhHHHHHHHHHHHHHcCCcCCcc---------------ccccCCCCccchhHHHHHHHHHHHHHHHHHcCC-c
Confidence 22222 222 3444444443333333333 3345566655 556667899999999876443 2
Q ss_pred hHHHHHHHHHHHHHHhh------hhcccccccchhhh
Q 010424 408 NLVAAINNRLSALSFHV------REYYWVDMKKINEI 438 (511)
Q Consensus 408 ~~~~~i~~RL~aLs~hi------r~yYWlD~~~ln~I 438 (511)
...+...+....++..| .+.||......-.+
T Consensus 208 ~~~~~~~~~a~~i~~~l~~~~~~~~g~~~~~~~~~~~ 244 (448)
T PF00723_consen 208 GDAERWRETADEIRERLEGWYGLERGFWPEFGYFIRI 244 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEESGGGBTTSSBESEE
T ss_pred hHHHHHHHHHHHHHHHhhhhccccccccCCCCeEEEe
Confidence 33334444444444444 56788766544433
No 14
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.88 E-value=0.67 Score=51.22 Aligned_cols=187 Identities=18% Similarity=0.135 Sum_probs=104.4
Q ss_pred ccEEEeecCCCCC--CCC--CCCceeeccChHHHHHHHhcCChHHHHHHHHHHhhccccceeccccCCCCCcccccEEEe
Q 010424 208 PVGTVAANNPADK--QPL--NYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVR 283 (511)
Q Consensus 208 PVGTvAA~D~~~~--~~L--NYdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~g~GvmPASFKV~ 283 (511)
+-+.|||.+.+-. ..- -|+-||+||++-+++|++..|..+..+.|+.-+.++|.-+..+...-
T Consensus 261 ~G~ivAs~t~~l~~~~~g~~dY~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~~~~~~~y------------- 327 (612)
T COG3387 261 TGAIVASPTTSLPELIGGTRDYRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQTPNGKLYHKY------------- 327 (612)
T ss_pred CCcEEEcCCCCccccCCCCCCceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCceeeEE-------------
Confidence 3555666543321 123 39999999999999999999999999999999999887654311111
Q ss_pred eecCCCCCCCceeeeccCcCCcccc-----cccc--cCCccHHHHHHHHHhhccccccccc---chhHHHHHHHHHHhhh
Q 010424 284 TVPLDGGDGTLEEVLDPDFGESAIG-----RVAP--VDSGLWWIILLRAYGKITGDYALQE---RVDVQTGIRLILNLCL 353 (511)
Q Consensus 284 ~~p~~~~~~~~eE~L~ADFGe~AIG-----RVap--VDSgLWWiILLraY~k~TGD~sl~~---~p~vQrGIrlIL~LcL 353 (511)
++++ . |++++-.+ +.-| +|-..|=...|.-|....+|.-+.. ++.+-..-.++.. +
T Consensus 328 --~~~g---------~-~~~~~w~~~~~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 393 (612)
T COG3387 328 --SIDG---------S-DLAESWLPVSGYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRR--M 393 (612)
T ss_pred --ecCC---------C-ccccccccccCCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--H
Confidence 1111 0 33333333 2233 3555555555555556655554432 1222222222221 0
Q ss_pred cCCCCCCceeeecCCcccccccccccCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhccc
Q 010424 354 TDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYW 429 (511)
Q Consensus 354 ~~~Fd~fPtLlVpDGs~MIDRrMgV~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYW 429 (511)
...=. .+-.||-..|=. |+| |=-+.-+.-|.||.||..|.+...+ +...+...+....+..-+-+.++
T Consensus 394 ~~~~~---~~~~p~~~~WEe-r~g---~~~yt~~~~~agLd~A~~lA~~~gd-~~~a~~~~~~ad~ik~~v~~~~~ 461 (612)
T COG3387 394 EKIKA---NLPTPDFDLWEE-RGG---HFTYTKATVYAGLDAAADLAEEFGD-KGSAEHWRKTADELKEAVLRRGY 461 (612)
T ss_pred Hhhhc---CCCCCccceecc-cCC---cccchHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHhcc
Confidence 00000 222456654443 555 5556778899999999999987553 33444444433334444444433
No 15
>PRK10137 alpha-glucosidase; Provisional
Probab=93.86 E-value=2.4 Score=48.70 Aligned_cols=137 Identities=16% Similarity=0.078 Sum_probs=86.8
Q ss_pred HHHHHhhhhcCCcccEEEeecCCCC---CCC---CCCCceeeccChHHHHHHHhcCChHHHHHHHHHHhhccccceeccc
Q 010424 195 KLLRDAVVNYCGNPVGTVAANNPAD---KQP---LNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDC 268 (511)
Q Consensus 195 elL~~SlV~y~g~PVGTvAA~D~~~---~~~---LNYdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~lD~ 268 (511)
++..+|+...+++--|..-|..+.- ... -.+.++|.||-+..|++++. -+||+.+.=|..+++.|.++. |-
T Consensus 308 ~l~~kA~~~L~~Nwr~~~g~~~~~~t~Ps~gl~Wf~~~~~W~WDS~~~A~~la~-fdpelA~~~lr~Lf~~Q~~~~--d~ 384 (786)
T PRK10137 308 RVAVKAMETLNGNWRSPAGAVKFNTVTPSVTARWFSGNQTWPWDTWKQAYAMAH-FNPDVAKENIRAVFSWQIQPD--DS 384 (786)
T ss_pred HHHHHHHHHHHHhccccccccccCceEeCCCCCCCCCCCccchHHHHHHHHHhh-cCHHHHHHHHHHHHHhhcccc--CC
Confidence 3444555555666666553443321 111 22345999999999998765 578999999999998886543 34
Q ss_pred cCC-CCCcccccEEEeeecCCCCCCCceeeeccCcC-Cc---ccccccccCCccHHHHHHHHHhhccccccccc--chhH
Q 010424 269 YSP-GQGLMPASFKVRTVPLDGGDGTLEEVLDPDFG-ES---AIGRVAPVDSGLWWIILLRAYGKITGDYALQE--RVDV 341 (511)
Q Consensus 269 ~~~-g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFG-e~---AIGRVapVDSgLWWiILLraY~k~TGD~sl~~--~p~v 341 (511)
+.| ..|-||--+ .++| -+|.| +. .-|-..| =-..++++.|.+.|||.++.+ -|.+
T Consensus 385 ~r~~~~G~Iph~v--f~~~------------~p~R~g~~~~~ne~~tqP----PL~a~av~~vy~~t~d~~fl~~lyPkL 446 (786)
T PRK10137 385 VRPQDVGFVPDLI--AYNL------------SPERGGDGGNWNERNTKP----SLAAWSVMEVYNVTQDKAWLAEMYPKL 446 (786)
T ss_pred CCcCCCCeeeEEe--ccCC------------CcccccccccccCCCcCc----CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 433 368888654 1222 12222 11 1123334 345667777779999999977 8999
Q ss_pred HHHHHHHHHhh
Q 010424 342 QTGIRLILNLC 352 (511)
Q Consensus 342 QrGIrlIL~Lc 352 (511)
.+..++++.-.
T Consensus 447 ~a~h~Ww~~~R 457 (786)
T PRK10137 447 VAYHDWWLRNR 457 (786)
T ss_pred HHHHHHHHhcC
Confidence 99999988643
No 16
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=93.44 E-value=0.26 Score=52.78 Aligned_cols=224 Identities=17% Similarity=0.181 Sum_probs=126.8
Q ss_pred CCcccEEEeecCCCCCCCCCCCceeeccChHHH--HHHHhcCChHHHHHHHHHHhhccccceeccccC----CC-CCccc
Q 010424 205 CGNPVGTVAANNPADKQPLNYDQVFIRDFVPSA--LAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYS----PG-QGLMP 277 (511)
Q Consensus 205 ~g~PVGTvAA~D~~~~~~LNYdqVFiRDfVPsa--LafLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~----~g-~GvmP 277 (511)
.+.+-=+|..-|=. --|+||-+--. ..-|++.+++| +.-+..++..|..--.+|-|- ++ ..-+|
T Consensus 29 ~~~~~tFViTGDIp--------AmWLRDS~~Q~~pYl~l~~~d~~l-~~li~G~I~rQa~~I~~dPYaNAF~~~~~s~~~ 99 (424)
T PF06824_consen 29 DEDPDTFVITGDIP--------AMWLRDSAAQLRPYLPLAKEDPSL-ARLIRGVINRQARYILIDPYANAFNPPPESGIP 99 (424)
T ss_dssp TSTSEEEE-SBSSS--------SEEHHHHHHHCGGGGGGGCC-HHH-HHHHHHHHHHHHHHHHH-TT-SEEESS-----T
T ss_pred CCCCCeEEEecCch--------hhhccccHhHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHhcchhhcccCCccccccc
Confidence 45666667666632 36999965332 23355666655 455667777777666666543 32 11111
Q ss_pred ccEEEeeecCCCCCCCceeeeccCcC-CcccccccccCCccHHHHHHHHHhhcccccccccchhHHHHHHHHHHhhhcCC
Q 010424 278 ASFKVRTVPLDGGDGTLEEVLDPDFG-ESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTDG 356 (511)
Q Consensus 278 ASFKV~~~p~~~~~~~~eE~L~ADFG-e~AIGRVapVDSgLWWiILLraY~k~TGD~sl~~~p~vQrGIrlIL~LcL~~~ 356 (511)
.+.. .-...+...+.|- ..--=|=--+||-=..+-|.+.|-|.|||.++-... +.+|+++||+..-.+.
T Consensus 100 ~~~~---------~~~~~D~~~~~~~~~~v~ErKyElDSL~~~l~La~~y~~~Tgd~~~f~~~-~~~A~~~il~~~~~eq 169 (424)
T PF06824_consen 100 PNGN---------GHWQSDTTEMPYDPPWVWERKYELDSLCYFLQLAYQYWKATGDTSFFDED-WLRAVRLILDTWRTEQ 169 (424)
T ss_dssp SS-T---------SGCCGSBS------TTEEE----HHHHHHHHHHHHHHHHHH--GTTSSHH-HHHHHHHHHHHHHHTT
T ss_pred cccc---------CCCCCCccCCCcCCCceeeecchhhhhhHHHHHHHHHHHhhCChhhhhHH-HHHHHHHHHHHHHHHH
Confidence 1110 0000011111100 000112223899999999999999999999998766 9999999999876654
Q ss_pred C-------C--CCc------------eee-------ecCCccccc------ccccccCcchhhHHHHHHHHHHHHHHhcc
Q 010424 357 F-------D--MFP------------SLL-------VTDGSCMID------RRMGIHGHPLEIQSLFYSALRCSREMLIV 402 (511)
Q Consensus 357 F-------d--~fP------------tLl-------VpDGs~MID------RrMgV~G~PLEIQaLFY~ALRca~eLL~~ 402 (511)
- + ..| ||- |.- .=||= .-.-+|||-+.-++++-.+|+-+.+|+..
T Consensus 170 ~~t~~~~~~~~~s~Y~F~R~~~~~tdtl~~~G~G~pv~~-tGli~S~FRPSDDa~~y~yliPsNm~a~v~L~~laei~~~ 248 (424)
T PF06824_consen 170 RPTYDEDHEGLPSPYRFQRPTCRPTDTLPNDGRGNPVAY-TGLIWSGFRPSDDACIYPYLIPSNMFAVVALEYLAEILRA 248 (424)
T ss_dssp G------SSSCS-S---BESBSSGGGS-HHHHT-S-----SSS-B-SB-TTSSB-SSSEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccCCCcceeeccCCCCCccccCCCcCCcCCC-CCceecCcCCCCcchhcCcCChHHHHHHHHHHHHHHHHHH
Confidence 4 1 111 111 111 11220 12448999999999999999999999985
Q ss_pred ccCch--hHHHHHHHHHHHHHHhhhhcccccccchhhhhccCccccch
Q 010424 403 NDGTK--NLVAAINNRLSALSFHVREYYWVDMKKINEIYRYKTEEYSA 448 (511)
Q Consensus 403 ~~~~~--~~~~~i~~RL~aLs~hir~yYWlD~~~ln~IyRykTEEYs~ 448 (511)
....+ ++.++...--..++.=|.+|-=++..+-..||.|-+.-||.
T Consensus 249 ~~~~~~~~la~~~~~la~eI~~gI~~~giv~h~~~g~iyAYEVDG~G~ 296 (424)
T PF06824_consen 249 LGWDDSAELAERARALADEIRAGIEKHGIVEHPKFGKIYAYEVDGFGN 296 (424)
T ss_dssp TT-THHHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE-SEE-SSS-
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHheEEeCCCCCeEEEEEecCCCC
Confidence 44322 45444444444466667888888888999999999999998
No 17
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=56.69 E-value=17 Score=43.58 Aligned_cols=147 Identities=22% Similarity=0.308 Sum_probs=92.1
Q ss_pred CCCCCceeeccChHHHHH-HHhcCChHHHHHHHHHHhhccccceeccccCCCCCcccccEEEeeecCCCCCCCceeeecc
Q 010424 222 PLNYDQVFIRDFVPSALA-FLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDP 300 (511)
Q Consensus 222 ~LNYdqVFiRDfVPsaLa-fLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~A 300 (511)
..+|=+||.||-.++-=. +|+.|++.-.|+-++..-+ +...|+||--.. |..-|
T Consensus 1076 svg~mRcWGRDtFIaLrG~ll~TGRy~EAr~iIlaFa~-----------tlrHGLIPNLLd--------------~G~~~ 1130 (1521)
T KOG3625|consen 1076 SVGIMRCWGRDTFIALRGILLITGRYVEARNIILAFAG-----------TLRHGLIPNLLD--------------EGIYA 1130 (1521)
T ss_pred hhhhhhhcccceeeecccceEeecchHHHHHHHHHHHH-----------Hhhccccchhhh--------------ccccc
Confidence 579999999997765443 5678999999987665443 134899997552 33444
Q ss_pred CcCCcccccccccCCccHHHHHHHHHhhcc--c--------------cccccc-chhH--------HHHHHH--------
Q 010424 301 DFGESAIGRVAPVDSGLWWIILLRAYGKIT--G--------------DYALQE-RVDV--------QTGIRL-------- 347 (511)
Q Consensus 301 DFGe~AIGRVapVDSgLWWiILLraY~k~T--G--------------D~sl~~-~p~v--------QrGIrl-------- 347 (511)
-| ---|+-.||+-...-|++.- | |.+... --.+ |.+|+.
T Consensus 1131 Ry--------NcRDA~W~wl~~Iq~Yve~vPnG~~ILkd~VsRiyP~DDs~v~~pgaf~q~L~evi~Eal~kH~qGiqfR 1202 (1521)
T KOG3625|consen 1131 RY--------NCRDAVWWWLQCIQDYVEMVPNGLDILKDPVSRIYPTDDSAVLPPGAFDQPLFEVIQEALQKHFQGIQFR 1202 (1521)
T ss_pred cc--------cchHHHHHHHHHHHHHHHhCCChhhhhhCchheeCCCCCcccCCCchhhHHHHHHHHHHHHHHhccccch
Confidence 44 33699999999999998761 1 222121 1112 222221
Q ss_pred -------HHHhhhcCCCCCC-----ceeeecC-----Ccccccccccc--------------cCcchhhHHHHHHHHHHH
Q 010424 348 -------ILNLCLTDGFDMF-----PSLLVTD-----GSCMIDRRMGI--------------HGHPLEIQSLFYSALRCS 396 (511)
Q Consensus 348 -------IL~LcL~~~Fd~f-----PtLlVpD-----Gs~MIDRrMgV--------------~G~PLEIQaLFY~ALRca 396 (511)
|=.-.-.+||+.. -|=+|-- |+-|.| .||- .|.-.|||-|-|+|||.-
T Consensus 1203 ErnAGpqiD~~M~DeGFnv~~gV~~~TGfv~GGn~~NCGTWMD-KMGeSerAgnkG~PaTPRDGsAVEi~GL~~salrfl 1281 (1521)
T KOG3625|consen 1203 ERNAGPQIDRNMKDEGFNVTAGVDEETGFVYGGNRFNCGTWMD-KMGESERAGNKGIPATPRDGSAVEIVGLSKSALRFL 1281 (1521)
T ss_pred hccCCcccchhhhccCcceeeccccccceeecCCccccchhhh-hcccchhccCCCCCCCCCCCceeehhhhHHHHHHHH
Confidence 0011124566642 2334433 345777 7763 334499999999999999
Q ss_pred HHHhcc
Q 010424 397 REMLIV 402 (511)
Q Consensus 397 ~eLL~~ 402 (511)
.+|-+.
T Consensus 1282 ~elkek 1287 (1521)
T KOG3625|consen 1282 LELKEK 1287 (1521)
T ss_pred HHHHhc
Confidence 998776
No 18
>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.71 E-value=15 Score=38.50 Aligned_cols=41 Identities=37% Similarity=0.529 Sum_probs=33.1
Q ss_pred HHHHHhhhcCC----CCCCc-----eeeecCCcccccccccccCcchhhHHH
Q 010424 346 RLILNLCLTDG----FDMFP-----SLLVTDGSCMIDRRMGIHGHPLEIQSL 388 (511)
Q Consensus 346 rlIL~LcL~~~----Fd~fP-----tLlVpDGs~MIDRrMgV~G~PLEIQaL 388 (511)
.++|++|+.+. ||.+| .|.|+-|. +|.=-..+||||+-|+.
T Consensus 109 ~l~l~l~~~~~~l~~~~~~~~h~RdiLVCTHgn--~D~cCarfG~P~Y~~~r 158 (316)
T COG4759 109 VLILALLLQGKELAQFDIYPQHTRDILVCTHGN--VDVCCARFGYPFYQQLR 158 (316)
T ss_pred hhHHHHhcCCccchhhccchhhhceEEEecCCC--hhhhhhhcCcHHHHHHH
Confidence 36777887654 99999 78888887 78888999999987775
No 19
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=36.39 E-value=2.4e+02 Score=34.21 Aligned_cols=170 Identities=21% Similarity=0.276 Sum_probs=101.5
Q ss_pred ccChHHHHHHHhcCChHHHHHHHHHHhhccccceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccc
Q 010424 231 RDFVPSALAFLLNGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRV 310 (511)
Q Consensus 231 RDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRV 310 (511)
||-.==.|.|++.- |+.+|.-++.+..-| . .+|=.|--|- |... .+ . ...--+
T Consensus 615 RD~~Qd~l~f~~~~-p~~aR~qIl~~as~Q---f-------~eGd~~hWf~----p~t~-ag--~-qir~~~-------- 667 (1056)
T COG3459 615 RDQLQDTLEFLLAR-PALARKQILDAASRQ---F-------VEGDVQHWFL----PDTY-AG--V-QIRTSI-------- 667 (1056)
T ss_pred ccccccchhhhhcC-HHHHHHHHHHHHhhc---c-------cCCCcccccc----cccc-cc--c-hhhccc--------
Confidence 44444457777776 999999776666532 2 3466677774 4211 11 0 011112
Q ss_pred cccCCccHHHHHHHHHhhccccccccc-------ch--------------hHHHHHHHHHHhhhcCCCCCCceeeecCCc
Q 010424 311 APVDSGLWWIILLRAYGKITGDYALQE-------RV--------------DVQTGIRLILNLCLTDGFDMFPSLLVTDGS 369 (511)
Q Consensus 311 apVDSgLWWiILLraY~k~TGD~sl~~-------~p--------------~vQrGIrlIL~LcL~~~Fd~fPtLlVpDGs 369 (511)
-|--+|-+-..-.|+|.|||.++.. .| +|+++|.++..-. +=.+.|+.+ |+
T Consensus 668 --sDdvvWl~~a~~~Yl~~TGD~aILdE~iPf~~~~~l~~~s~e~~TLyEH~~rAld~av~r~---g~~glpli~---gG 739 (1056)
T COG3459 668 --SDDVVWLLKAIADYLKETGDAAILDEVIPFIDGPALPEFSKEQATLYEHCARALDLAVARL---GPHGLPLIL---GG 739 (1056)
T ss_pred --CCceeeeHHHHHHHHHhcCcHhhhhccccccCCCccccccccchhHHHHHHHHHHHHHHhc---CCCCccccc---CC
Confidence 4677999999999999999998754 23 5888988887321 122333333 34
Q ss_pred ccccccccc---cC--cchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhcccccccchhhhhccC
Q 010424 370 CMIDRRMGI---HG--HPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVDMKKINEIYRYK 442 (511)
Q Consensus 370 ~MIDRrMgV---~G--~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYWlD~~~ln~IyRyk 442 (511)
+|=| -|-. .| -..=+==+++.+|+...+|-+...+ ++=+++..+-..+|+.-+..+=|- -+.||+-
T Consensus 740 DWND-~ln~vg~~g~geSv~lgW~l~~tlq~F~~lak~r~d-~~r~~~~~~~~ea~~~~~~~~~wD-----g~wy~r~ 810 (1056)
T COG3459 740 DWND-GLNLVGNGGKGESVWLGWFLALTLQTFKELAKARGD-EARADTWAKHVEALREALETNGWD-----GEWYRRG 810 (1056)
T ss_pred cccc-cccccccCCccceeehhhHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHhcCCC-----cceEEec
Confidence 4444 3322 22 2223334788999999999987544 333355555566666666666675 5666653
No 20
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=30.15 E-value=97 Score=24.98 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=35.6
Q ss_pred CcchhhHHHHHHHHHHHHHHhccccCchhHHH--HHHHHHHHHHHhh
Q 010424 380 GHPLEIQSLFYSALRCSREMLIVNDGTKNLVA--AINNRLSALSFHV 424 (511)
Q Consensus 380 G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~--~i~~RL~aLs~hi 424 (511)
+..=..+++...||-+|.+++......++... ++.+|+..|...|
T Consensus 42 ~~~~~~~~~vlaaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~~l 88 (89)
T PF05164_consen 42 PKLSPERLAVLAALNLADELLKLKRELDELEELERLEERIEELNERL 88 (89)
T ss_dssp CTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34456678888999999999998777677767 8888988887654
No 21
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=23.56 E-value=61 Score=24.52 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.3
Q ss_pred ccchhHHHHHHHHHHhh
Q 010424 336 QERVDVQTGIRLILNLC 352 (511)
Q Consensus 336 ~~~p~vQrGIrlIL~Lc 352 (511)
...||||+||..++.+.
T Consensus 20 l~DpdvqrgL~~ll~~l 36 (42)
T PF07849_consen 20 LRDPDVQRGLGFLLAFL 36 (42)
T ss_pred HcCHHHHHHHHHHHHHH
Confidence 45799999999998765
No 22
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=23.28 E-value=1.1e+03 Score=26.72 Aligned_cols=150 Identities=20% Similarity=0.167 Sum_probs=73.7
Q ss_pred ccchHHHHHHHHHHHhhhhcCC--------cccEEEeecCCCCCCCCCCCceeeccChHHHHHHHhcC--C----hHHHH
Q 010424 185 EASNIEKEAWKLLRDAVVNYCG--------NPVGTVAANNPADKQPLNYDQVFIRDFVPSALAFLLNG--E----GDIVK 250 (511)
Q Consensus 185 ~~~~l~~eAwelL~~SlV~y~g--------~PVGTvAA~D~~~~~~LNYdqVFiRDfVPsaLafLl~G--e----~EIVr 250 (511)
++++.+++|.+-|++..|.-.| .+.|--+=.+. .-.|-. +-|-+-+..|++..+ + .+-++
T Consensus 333 ~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~----~~~~pd--~ddTa~~L~AL~~~~~~~~~~~~~~i~ 406 (635)
T TIGR01507 333 ADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFD----NVYYPD--VDDTAVVVWALNGLRLPDERRRRDAMT 406 (635)
T ss_pred CCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCC----CCCCCC--chhHHHHHHHHHHcCCCccccchHHHH
Confidence 3578999999988887664222 11111111110 001222 235555555555544 2 24677
Q ss_pred HHHHHHhhccccceeccccCCCCCcccccEEEeeecCCCCCCCceeeeccCcCCcccccccccCCccHHHHHHHHHhhcc
Q 010424 251 NFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGGDGTLEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKIT 330 (511)
Q Consensus 251 nFL~~tL~LQs~ek~lD~~~~g~GvmPASFKV~~~p~~~~~~~~eE~L~ADFGe~AIGRVapVDSgLWWiILLraY~k~T 330 (511)
..+.-+|..|. ..|-.++ |.. +++..--+..--+||+. .+..-. +|-+ --++.||....
T Consensus 407 ra~~wLl~~Qn----------~dGgw~a-f~~-----~~~~~~l~~~~f~d~~~-~~D~~~-~d~T---a~~l~al~~~g 465 (635)
T TIGR01507 407 KAFRWIAGMQS----------SNGGWGA-FDV-----DNTSDLLNHIPFCDFGA-VTDPPT-ADVT---ARVLECLGSFG 465 (635)
T ss_pred HHHHHHHHhcC----------CCCCEec-ccC-----CcchhHHhcCCcccccc-ccCCCC-ccHH---HHHHHHHHHhC
Confidence 77777777776 2455543 320 00000000001123321 222211 2222 23556665432
Q ss_pred cccccccchhHHHHHHHHHHhhhcCCCCCCceeeecCCcccccccccccCc
Q 010424 331 GDYALQERVDVQTGIRLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGH 381 (511)
Q Consensus 331 GD~sl~~~p~vQrGIrlIL~LcL~~~Fd~fPtLlVpDGs~MIDRrMgV~G~ 381 (511)
-+. ..+.+++|+++|+ ....+||+ ++|.||.
T Consensus 466 ~~~---~~~~i~rav~~L~------------~~Q~~dG~-----W~g~wg~ 496 (635)
T TIGR01507 466 YDD---AWPVIERAVEYLK------------REQEPDGS-----WFGRWGV 496 (635)
T ss_pred CCc---hhHHHHHHHHHHH------------HccCCCCC-----CccCCCC
Confidence 111 2789999999999 55678998 4566663
No 23
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=22.78 E-value=72 Score=26.28 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=17.0
Q ss_pred ccccccccccCcchhhHHHHHHHHHH
Q 010424 370 CMIDRRMGIHGHPLEIQSLFYSALRC 395 (511)
Q Consensus 370 ~MIDRrMgV~G~PLEIQaLFY~ALRc 395 (511)
|++| .-+--|||+|-|.-.|.-+|.
T Consensus 19 fi~D-~Se~CGysie~Q~~L~~~ik~ 43 (58)
T PF06858_consen 19 FIID-PSEQCGYSIEEQLSLFKEIKP 43 (58)
T ss_dssp EEE--TT-TTSS-HHHHHHHHHHHHH
T ss_pred EEEc-CCCCCCCCHHHHHHHHHHHHH
Confidence 4556 668899999999988776653
No 24
>PRK13271 treA trehalase; Provisional
Probab=21.61 E-value=1.6e+02 Score=33.29 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHhhhhcCCcccEEEeecCCCC-CCCCCCCceeeccChHHHHHHHhcCChHHHHHHHHHHhh
Q 010424 188 NIEKEAWKLLRDAVVNYCGNPVGTVAANNPAD-KQPLNYDQVFIRDFVPSALAFLLNGEGDIVKNFLLHTLQ 258 (511)
Q Consensus 188 ~l~~eAwelL~~SlV~y~g~PVGTvAA~D~~~-~~~LNYdqVFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~ 258 (511)
.-+..-|..|-|.+..- ..-+++--..+.- ...=.++++|-=|---.++.+|.+|..|++|+-+...+.
T Consensus 121 ~~i~~lW~~L~R~~~~~--~~~~sli~lp~p~iVPGGRFrE~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf~~ 190 (569)
T PRK13271 121 EHIDGLWPVLTRSTENT--EKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAH 190 (569)
T ss_pred HHHHHHHHHhcCcCCCC--CCCCceecCCCCeEecCCCcchhhhhHHHHHHHhhHhcCCHHHHHHHHHHHHH
Confidence 45666788776644221 1234444443322 334568999999999999999999999998876666555
No 25
>PRK10015 oxidoreductase; Provisional
Probab=20.15 E-value=54 Score=34.18 Aligned_cols=98 Identities=16% Similarity=0.294 Sum_probs=48.7
Q ss_pred ceeeecCCcccccccccc--cCcchhhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHhhhhccccc-ccchhh
Q 010424 361 PSLLVTDGSCMIDRRMGI--HGHPLEIQSLFYSALRCSREMLIVNDGTKNLVAAINNRLSALSFHVREYYWVD-MKKINE 437 (511)
Q Consensus 361 PtLlVpDGs~MIDRrMgV--~G~PLEIQaLFY~ALRca~eLL~~~~~~~~~~~~i~~RL~aLs~hir~yYWlD-~~~ln~ 437 (511)
-.|+|=|++.|+| ++++ .|.-+=+. ++..||..+++....+ ++ -.+.|..-..-+++.||+. +++..+
T Consensus 296 g~llvGDAAg~v~-p~~~~g~Gi~~A~~----SG~~AAe~i~~a~~~~-d~---s~~~l~~Y~~~~~~~~~~~~l~~~~~ 366 (429)
T PRK10015 296 GVMIVGDAAGFCL-NLGFTVRGMDLAIA----SAQAAATTVIAAKERA-DF---SASSLAQYKRELEQSCVMRDMQHFRK 366 (429)
T ss_pred CeEEEeccccccc-ccCccccchhHHHH----HHHHHHHHHHHHHhcC-CC---ccccHHHHHHHHHHCHHHHHHHHHhC
Confidence 4799999999999 4433 44332222 3444444444321110 01 1122333344456666643 444443
Q ss_pred hhccCccccchhhhcccccCCCCCcchhhcccCCCC
Q 010424 438 IYRYKTEEYSADAINKFNIYPDQIPSWLVDWIPNEG 473 (511)
Q Consensus 438 IyRykTEEYs~~a~NkFNI~PdsIP~Wl~dwlp~~G 473 (511)
+.+.-.++ .-|+.||+-+=+=+.+++-.+|
T Consensus 367 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 396 (429)
T PRK10015 367 IPALMENP------RLFSQYPRMVADIMNDMFTIDG 396 (429)
T ss_pred hHhhhcCc------cHHHHHHHHHHHHHHHhcccCC
Confidence 33322221 4567777776666666655444
Done!