BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010425
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/504 (71%), Positives = 421/504 (83%), Gaps = 1/504 (0%)
Query: 7 HQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVA 66
+EFIFRSKLPDIYIP +LPLH+Y EN+S + +PC+ING GDVYTYADVELT+R+VA
Sbjct: 4 QEEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVA 63
Query: 67 AGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXX 126
+GL+K+G+Q+GDVIML L + P+FV AFLGAS+ GA T ANPF TP E
Sbjct: 64 SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123
Query: 127 XXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVA 186
Y +KV+D + +++ +D P+ CLHFSEL TQADENE P V I+PDDVVA
Sbjct: 124 LLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSEL-TQADENEAPQVDISPDDVVA 182
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVL 246
LPYSSGTTGLPKGVMLTHKGL+TSVAQQVDG+NPNLY H EDVILCVLP+FHIY+LNS++
Sbjct: 183 LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIM 242
Query: 247 LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTV 306
LC LRVGA ILIM KF+I L+ L++KYKV++AP VPP+++++AKS D+DK+D+SS+R +
Sbjct: 243 LCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMI 302
Query: 307 MSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVR 366
SG AP+GKELED VRAK P A+LGQGYGMTEAGPVL+MCLAFAKEPF+IK GACGTVVR
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362
Query: 367 NAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYID 426
NAEMKIVDP+TG SLPRNQ GEICIRG QIMKGYLND EAT TIDKEGWLHTGDIGYID
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422
Query: 427 DDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVR 486
DDDELFIVDRLKELIK+KGFQVAPAELEA+LIAHP ISDAAVV +KDE AGEVPVAFVV+
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482
Query: 487 SNGSKITEDEIKQYISKQVIFFSH 510
S S+ TEDEIKQYISKQVIF+
Sbjct: 483 SEKSQATEDEIKQYISKQVIFYKR 506
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/516 (68%), Positives = 416/516 (80%), Gaps = 7/516 (1%)
Query: 2 EAKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELT 61
++ ++ + IFRSKLPDIYIPNHL LH Y F+NIS+FA +PC+INGPTG VYTY+DV +
Sbjct: 38 QSNNNNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVI 97
Query: 62 SRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXX 121
SR++AA KLGV + DV+MLLL NCP+FV +FL AS+ GAT+T ANPF+TP E
Sbjct: 98 SRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAK 157
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVTID-----PPPENCLHFSELITQADENE--I 174
Y DK++ L G IV ID P PE CL F+EL E I
Sbjct: 158 ASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVI 217
Query: 175 PAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVL 234
+V+I+PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY H +DVILCVL
Sbjct: 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVL 277
Query: 235 PLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD 294
P+FHIY+LNS++LC LRVGAAILIM KF+I L+EL+Q+ KVTVAP VPPIVLA+AKS +
Sbjct: 278 PMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337
Query: 295 VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPF 354
+KYD+SSIR V SGAAP+GKELEDAV AK P+AKLGQGYGMTEAGPVL+M L FAKEPF
Sbjct: 338 TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPF 397
Query: 355 EIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE 414
+KSGACGTVVRNAEMKIVDPDTG SL RNQ GEICIRG QIMKGYLN+ AT TIDK+
Sbjct: 398 PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKD 457
Query: 415 GWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDE 474
GWLHTGDIG IDDDDELFIVDRLKELIK+KGFQVAPAELEA+LI HP+I+D AVV MK+E
Sbjct: 458 GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEE 517
Query: 475 AAGEVPVAFVVRSNGSKITEDEIKQYISKQVIFFSH 510
AAGEVPVAFVV+S S+++ED++KQ++SKQV+F+
Sbjct: 518 AAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKR 553
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 264 bits (675), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 168/465 (36%), Positives = 245/465 (52%), Gaps = 23/465 (4%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ + D N
Sbjct: 172 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 231
Query: 224 LHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAP 280
+ + IL V+P H + + + L +C RV ++M +F+ + +Q YK+ A
Sbjct: 232 I-PDTAILSVVPFHHGFGMFTTLGYLICGFRV----VLMYRFEEELFLRSLQDYKIQSAL 286
Query: 281 FVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340
VP + AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE
Sbjct: 287 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 346
Query: 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGY 400
+ + +P GA G VV E K+VD DTG +L NQ GE+C+RG IM GY
Sbjct: 347 SAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY 401
Query: 401 LNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAH 460
+N+ EAT IDK+GWLH+GDI Y D+D+ FIVDRLK LIK+KG+QVAPAELE++L+ H
Sbjct: 402 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461
Query: 461 PNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
PNI DA V + D+ AGE+P A VV +G +TE EI Y++ QV
Sbjct: 462 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 506
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 264 bits (674), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 168/465 (36%), Positives = 245/465 (52%), Gaps = 23/465 (4%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ + D N
Sbjct: 172 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 231
Query: 224 LHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAP 280
+ + IL V+P H + + + L +C RV ++M +F+ + +Q YK+ A
Sbjct: 232 I-PDTAILSVVPFHHGFGMFTTLGYLICGFRV----VLMYRFEEELFLRSLQDYKIQSAL 286
Query: 281 FVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340
VP + AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE
Sbjct: 287 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 346
Query: 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGY 400
+ + +P GA G VV E K+VD DTG +L NQ GE+C+RG IM GY
Sbjct: 347 SAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY 401
Query: 401 LNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAH 460
+N+ EAT IDK+GWLH+GDI Y D+D+ FIVDRLK LIK+KG+QVAPAELE++L+ H
Sbjct: 402 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461
Query: 461 PNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
PNI DA V + D+ AGE+P A VV +G +TE EI Y++ QV
Sbjct: 462 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 506
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 168/465 (36%), Positives = 245/465 (52%), Gaps = 23/465 (4%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ + D N
Sbjct: 177 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 236
Query: 224 LHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAP 280
+ + IL V+P H + + + L +C RV ++M +F+ + +Q YK+ A
Sbjct: 237 I-PDTAILSVVPFHHGFGMFTTLGYLICGFRV----VLMYRFEEELFLRSLQDYKIQSAL 291
Query: 281 FVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340
VP + AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE
Sbjct: 292 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 351
Query: 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGY 400
+ + +P GA G VV E K+VD DTG +L NQ GE+C+RG IM GY
Sbjct: 352 SAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY 406
Query: 401 LNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAH 460
+N+ EAT IDK+GWLH+GDI Y D+D+ FIVDRLK LIK+KG+QVAPAELE++L+ H
Sbjct: 407 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 466
Query: 461 PNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
PNI DA V + D+ AGE+P A VV +G +TE EI Y++ QV
Sbjct: 467 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 511
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 167/462 (36%), Positives = 244/462 (52%), Gaps = 17/462 (3%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ L + D N
Sbjct: 177 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGN-Q 235
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVP 283
+ + IL V+P H + + + L L G +++M +F+ + +Q YK+ A VP
Sbjct: 236 IAPDTAILSVVPFHHGFGMFTTL-GYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVP 294
Query: 284 PIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVL 343
+ +AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE +
Sbjct: 295 TLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI 354
Query: 344 SMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLND 403
+ +P GA G VV E K+VD DTG +L NQ GE+ +RG IM GY+N+
Sbjct: 355 LITPKGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNN 409
Query: 404 REATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNI 463
EAT IDK+GWLH+GDI Y D+D+ FIVDRLK LIK+KG QVAPAELE++L+ HPNI
Sbjct: 410 PEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNI 469
Query: 464 SDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
DA V + D+ AGE+P A VV +G +TE EI Y++ QV
Sbjct: 470 FDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 511
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 245/473 (51%), Gaps = 23/473 (4%)
Query: 46 NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105
N TG Y+YA+ S + L G+ I L +NC +F + +IG
Sbjct: 46 NAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 106 TANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH-HGARIVTIDPPPENCLHFSE 164
N YT E DKV + + + + I + +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 165 LITQADENEIPA--------VKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQV 215
L T N P V+++ + VAL SSG+TGLPKGV LTH+ +VT +
Sbjct: 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQ 272
D N + +L V+P H + + + L +C RV +++ KFD ++ +Q
Sbjct: 226 DPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV----VMLTKFDEETFLKTLQ 280
Query: 273 KYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332
YK T VP + + KS ++KYD+S++ + SG AP+ KE+ +AV + + Q
Sbjct: 281 DYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340
Query: 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR 392
GYG+TE + + +P GA G VV + K++D DT SL N+ GE+C++
Sbjct: 341 GYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 393 GAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
G +MKGY+N+ EAT+ ID+EGWLHTGDIGY D++ FIVDRLK LIK+KG+QV PAE
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
LE++L+ HP+I DA V + D AGE+P A VV +G +TE E+ Y++ QV
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQV 508
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 245/473 (51%), Gaps = 23/473 (4%)
Query: 46 NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105
N TG Y+YA+ S + L G+ I L +NC +F + +IG
Sbjct: 46 NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 106 TANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH-HGARIVTIDPPPENCLHFSE 164
N YT E DKV + + + + I + +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 165 LITQADENEIPA--------VKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQV 215
L T N P V+++ + VAL SSG+TGLPKGV LTH+ +VT +
Sbjct: 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQ 272
D N + +L V+P H + + + L +C RV +++ KFD ++ +Q
Sbjct: 226 DPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV----VMLTKFDEETFLKTLQ 280
Query: 273 KYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332
YK T VP + + KS ++KYD+S++ + SG AP+ KE+ +AV + + Q
Sbjct: 281 DYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340
Query: 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR 392
GYG+TE + + +P GA G VV + K++D DT SL N+ GE+C++
Sbjct: 341 GYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 393 GAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
G +MKGY+N+ EAT+ ID+EGWLHTGDIGY D++ FIVDRLK LIK+KG+QV PAE
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
LE++L+ HP+I DA V + D AGE+P A VV +G +TE E+ Y++ QV
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQV 508
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 245/473 (51%), Gaps = 23/473 (4%)
Query: 46 NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105
N TG Y+YA+ S + L G+ I L +NC +F + +IG
Sbjct: 46 NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 106 TANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH-HGARIVTIDPPPENCLHFSE 164
N YT E DKV + + + + I + +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 165 LITQADENEIPA--------VKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQV 215
L T N P V+++ + VAL SSG+TGLPKGV LTH+ +VT +
Sbjct: 166 LDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQ 272
D N + +L V+P H + + + L +C RV +++ KFD ++ +Q
Sbjct: 226 DPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV----VMLTKFDEETFLKTLQ 280
Query: 273 KYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332
YK T VP + + KS ++KYD+S++ + SG AP+ KE+ +AV + + Q
Sbjct: 281 DYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340
Query: 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR 392
GYG+TE + + +P GA G VV + K++D DT SL N+ GE+C++
Sbjct: 341 GYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 393 GAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
G +MKGY+N+ EAT+ ID+EGWLHTGDIGY D++ FIVDRLK LIK+KG+QV PAE
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
LE++L+ HP+I DA V + D AGE+P A VV +G +TE E+ Y++ QV
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQV 508
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 192/318 (60%), Gaps = 10/318 (3%)
Query: 190 SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCA 249
SSG+TGLPKGV LTHK + + D N + + IL V+P H + + + L
Sbjct: 232 SSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQII-PDTAILTVIPFHHGFGMFTTL-GY 289
Query: 250 LRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSG 309
L G I++M +F+ + +Q YK+ A VP + AKS VDKYD+S++ + SG
Sbjct: 290 LTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASG 349
Query: 310 AAPMGKELEDAV--RAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRN 367
AP+ KE+ +AV R KLP + QGYG+TE + + + K GACG VV
Sbjct: 350 GAPLAKEVGEAVAKRFKLPGIR--QGYGLTET----TSAIIITPRGRDDKPGACGKVVPF 403
Query: 368 AEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDD 427
KIVD DTG +L NQ GE+C++G IMKGY+N+ EAT IDK+GWLH+GDI Y D
Sbjct: 404 FSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDK 463
Query: 428 DDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRS 487
D FIVDRLK LIK+KG+QV PAELE++L+ HP I DA V + D AGE+P A VV
Sbjct: 464 DGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLE 523
Query: 488 NGSKITEDEIKQYISKQV 505
G +TE E+ Y++ QV
Sbjct: 524 EGKTMTEQEVMDYVAGQV 541
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 241/480 (50%), Gaps = 47/480 (9%)
Query: 48 PTGDV-YTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTT 106
P+ DV TYA + + + A L+ LG+ KGD + LL+ N +F F GA+ +GA +
Sbjct: 38 PSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP 97
Query: 107 ANPFYTPPEXXXXXXXXXXXXXXXXXVYN-------DKVRDLSEHHGARIVTIDPPPENC 159
N PE +Y D +R ++ G I
Sbjct: 98 INTRLAAPEVSFILSDSGSKVV----IYGAPSAPVIDAIRAQADPPGTVTDWI-----GA 148
Query: 160 LHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVD 216
+E + A +E PAV+ DD + + Y+SGTTG PKGV+ TH+ + +S A +D
Sbjct: 149 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 217 GENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKV 276
+ D +L LP+FH+ +L +V+ A+R G ++ M +FD K+ L+ + +V
Sbjct: 208 -------VRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERV 259
Query: 277 TVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGM 336
+ VP I+ + + + + D R ++G APM + L AK + ++ QGY +
Sbjct: 260 CIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYAL 317
Query: 337 TEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQI 396
TE+ ++ L+ E K+G+ G ++ V D G+ + + GE+ I+ +
Sbjct: 318 TESCGGGTLLLS---EDALRKAGSAGRATMFTDVA-VRGDDGV-IREHGEGEVVIKSDIL 372
Query: 397 MKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAM 456
+K Y N EAT D GW TGDIG IDD+ L+I DRLK++I G V PAE+E++
Sbjct: 373 LKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESV 431
Query: 457 LIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQY---------ISKQVIF 507
+I P +S+ AV+ + DE GE+ A VV ++ ++++E +I +Y + K+VIF
Sbjct: 432 IIGVPGVSEVAVIGLPDEKWGEIAAAIVV-ADQNEVSEQQIVEYCGTRLARYKLPKKVIF 490
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 152/519 (29%), Positives = 241/519 (46%), Gaps = 36/519 (6%)
Query: 9 EFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTG------DVYTYADVELTS 62
E ++ P +Y P + L +F ++ II+ + + ++ +
Sbjct: 4 ELKYKIGFPSLYYPK-ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVT 62
Query: 63 RKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXX 122
+K+A+G+S+ GV+KG+ + + + N +V + AT NP Y E
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILND 122
Query: 123 XXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPD 182
+ + + E G V + N L SE+ E+ VK+NP+
Sbjct: 123 SEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSL--SEVXDSGSED-FENVKVNPE 179
Query: 183 DVVAL-PYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYS 241
+ VAL PY+ GTTG PKGV LTH L + Q L D I+ P FH
Sbjct: 180 EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATG----LSHXDTIVGCXPXFHSAE 235
Query: 242 LNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPI--VLAVAKSGDVDKYD 299
V L + VG ++ F+ L E ++KYK T + VPP VL YD
Sbjct: 236 FGLVNL-XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD 294
Query: 300 MSSIRTVMSGAAPMGKELED------AVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEP 353
S ++ +GA P+ L + A + P + Q +G TEA P ++ P
Sbjct: 295 WSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT-----TNPP 349
Query: 354 FEI-KSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYL-NDREATETTI 411
+ KS G + E+K++ + G L ++GEI IRG I KGY ++E E
Sbjct: 350 LRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWW 409
Query: 412 -DKEG--WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAV 468
D++G + TGD+G+ID++ L DR+KE+IK+KG+ +AP ELEA+L H + D AV
Sbjct: 410 YDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAV 469
Query: 469 VPMKDEAAGEVPVAFVVR--SNGSKITEDEIKQYISKQV 505
+ DE AGEVP AF+V K+ E++I +++ +++
Sbjct: 470 IGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERI 508
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 138/507 (27%), Positives = 236/507 (46%), Gaps = 35/507 (6%)
Query: 16 LPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVY--TYADVELTSRKVAAGLSKLG 73
P + L L + + F + + TG+V+ TYA+V +R++ GL LG
Sbjct: 9 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 68
Query: 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXV 133
V GD + L N + + A+ +GA TANP +P E +
Sbjct: 69 VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKE----IAYILNHAEDKVLL 124
Query: 134 YNDKVRDLSEHHGARIVTI-------DPPPENCLHFSELITQADENEIPAVKINPDDVVA 186
++ + L E + T+ + PE L + E + + E V++
Sbjct: 125 FDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE----EADPVRVPERAACG 180
Query: 187 LPYSSGTTGLPKGVMLTHKGLV--TSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS 244
+ Y++GTTGLPKGV+ +H+ LV + A VDG L ++DV+L V+P+FH+ +
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA----LSEKDVVLPVVPMFHVNAWCL 236
Query: 245 VLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIR 304
L +L + D L+EL VT VP + LA+A + + + ++R
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 296
Query: 305 TVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVL------SMCLAFAKEPFEIKS 358
++ G + + L R + ++ QGYG+TE PV+ S + ++E
Sbjct: 297 RLVVGGSAAPRSL--IARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354
Query: 359 GACGTVVRNAEMKIVDPDTGISLPRNQA--GEICIRGAQIMKGYLNDREATETTIDKEGW 416
G + +++ D + G +P++ GE+ ++G I GY + EAT + + +G+
Sbjct: 355 AKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGF 413
Query: 417 LHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAA 476
TGDI D++ + I DRLK+LIK G ++ +LE L+ HP + +AAVV +
Sbjct: 414 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKW 473
Query: 477 GEVPVAFVVRSNGSKITEDEIKQYISK 503
E P+A VV G K T +E+ +++ K
Sbjct: 474 QERPLAVVV-PRGEKPTPEELNEHLLK 499
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/464 (26%), Positives = 200/464 (43%), Gaps = 15/464 (3%)
Query: 45 INGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104
I GD +YA++ + +VA L G+Q GD + + + + +L G
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 105 TTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSE 164
N YT E D + ++ GA + T+ P L +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAA 140
Query: 165 LITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL 224
I DD+ A+ Y+SGTTG KG L+H L ++ VD
Sbjct: 141 AGASEAFATIDR---GADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVD----YWRF 193
Query: 225 HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPP 284
+DV++ LP++H + L L + + + KFD K+++L + TV VP
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPT 251
Query: 285 IVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
+ +S + K R +SG+AP+ + AK HA L + YG TE S
Sbjct: 252 FYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVL-ERYGXTETNXNTS 310
Query: 345 MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDR 404
+ P GA G + ++ DP+TG LPR G I ++G + KGY
Sbjct: 311 NPYDGDRVP-----GAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXP 365
Query: 405 EATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
E T++ +G+ TGD+G ID+ + I+ R K+L+ GF V P E+E+ + A P +
Sbjct: 366 EKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVV 425
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVIFF 508
++AV+ + GE A VVR G+ I E ++ + Q+ F
Sbjct: 426 ESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKF 469
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 132/494 (26%), Positives = 209/494 (42%), Gaps = 40/494 (8%)
Query: 25 LPLHTYCF-----ENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
+ LH + N + F DR + G T+ D + ++A+GL + GV GD
Sbjct: 1 MSLHDFTLADVYRRNAALFPDRTAFMV--DGVRLTHRDYLARAERLASGLLRDGVHTGDR 58
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVR 139
+ +L QNC + + + IGA N E Y D V
Sbjct: 59 VAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118
Query: 140 DLSEHHGA--RIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLP 197
+ G + I + F+ A + A + D + +++ G P
Sbjct: 119 GVLPSLGGVKKAYAIG---DGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRP 175
Query: 198 KGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAIL 257
+G +++ L+ + + VD L + DV L +LPLFH+ L ++L + G A +
Sbjct: 176 RGALISQGNLLIAQSSLVDAWR----LTEADVNLGMLPLFHVTGLG-LMLTLQQAGGASV 230
Query: 258 IMQKFDIVKLMELVQKYKVTV----APFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPM 313
I KFD + ++ +KVTV AP + I+ A + ++S+R V P
Sbjct: 231 IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPA------QLASLRAVTGLDTP- 283
Query: 314 GKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIV 373
E + A P+A +G +E S FA P+ + + G + + +V
Sbjct: 284 --ETIERFEATCPNATFWATFGQSET----SGLSTFA--PYRDRPKSAGRPLFWRTVAVV 335
Query: 374 DPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFI 433
D + LP + GEI +RG + KGY N+ AT+ + GW HTGD+G D D LF
Sbjct: 336 DAED-RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFY 393
Query: 434 VDRL--KELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSK 491
R KELIK G V PAE+E L HP I+DA V+ + D E A V G
Sbjct: 394 AGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES 453
Query: 492 ITEDEIKQYISKQV 505
I D + ++++ +
Sbjct: 454 IAADALAEFVASLI 467
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 31/396 (7%)
Query: 48 PTGDV-YTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTT 106
P+ DV TYA + + + A L+ LG+ KGD + LL+ N +F F GA+ +GA +
Sbjct: 24 PSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP 83
Query: 107 ANPFYTPPEXXXXXXXXXXXXXXXXXVYN-------DKVRDLSEHHGARIVTIDPPPENC 159
N PE +Y D +R ++ G I
Sbjct: 84 INTRLAAPEVSFILSDSGSKVV----IYGAPSAPVIDAIRAQADPPGTVTDWI-----GA 134
Query: 160 LHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 219
+E + A +E PAV+ DD + + Y+SGTTG PKGV+ TH+ SV
Sbjct: 135 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHE----SVHSAASSWA 189
Query: 220 PNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVA 279
+ + D +L LP+FH+ +L +V+ A+R G ++ M +FD K+ L+ + +V +
Sbjct: 190 STIDVRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERVCIG 248
Query: 280 PFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA 339
VP I+ + + + + D R ++G APM + L AK + ++ QGY +TE+
Sbjct: 249 GAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTES 306
Query: 340 GPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
++ L+ E K+G+ G ++ V D G+ + + GE+ I+ ++K
Sbjct: 307 CGGGTLLLS---EDALRKAGSAGRATMFTDVA-VRGDDGV-IREHGEGEVVIKSDILLKE 361
Query: 400 YLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVD 435
Y N EAT D GW TGDIG IDD+ L+I D
Sbjct: 362 YWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKD 396
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 120/464 (25%), Positives = 197/464 (42%), Gaps = 15/464 (3%)
Query: 45 INGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104
I GD +YA++ + +VA L G+Q GD + + + + +L G
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 105 TTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSE 164
N YT E D + ++ GA + T+ P L +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAA 140
Query: 165 LITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL 224
I DD+ A+ Y+SGTTG G ML+H L ++ VD
Sbjct: 141 AGASEAFATI---DRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRF 193
Query: 225 HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPP 284
+DV++ LP++H + L L +++ + FD +++L+ + V + VP
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPT 251
Query: 285 IVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
+ +S + +R +SG+AP+ + A HA L + YGMTE S
Sbjct: 252 FYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTS 310
Query: 345 MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDR 404
+ P GA G + ++ DP+TG LPR G I + G + GY
Sbjct: 311 NPYDGDRVP-----GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMP 365
Query: 405 EATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
E T + +G+ TGD+G ID+ + I+ R +L+ GF V P E+E+ + A P +
Sbjct: 366 EXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVV 425
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVIFF 508
++AV+ + GE A VVR G+ I E ++ + Q+ F
Sbjct: 426 ESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXF 469
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 123/470 (26%), Positives = 205/470 (43%), Gaps = 23/470 (4%)
Query: 33 ENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVF 92
+ +++ DR I G T ++Y +++ + ++AAG KLG+Q+ D +++ L N +F
Sbjct: 33 DRAAKYGDRIAITCGNTH--WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFE 90
Query: 93 AFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYND-KVRDLSEHHGARIVT 151
+GA A P + E Y+ R L+ +++ T
Sbjct: 91 VIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT 150
Query: 152 IDP-----PPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKG 206
+ E L +L T+ ++P VK + DV L S G+TGL K + TH
Sbjct: 151 LKNIIVAGEAEEFLPLEDLHTEP--VKLPEVKSS--DVAFLQLSGGSTGLSKLIPRTHDD 206
Query: 207 LVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV-LLCALRVGAAILIMQKFDIV 265
+ S+ + V+ +L V L LP+ H Y L+S +L L G +++
Sbjct: 207 YIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262
Query: 266 KLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKL 325
L+++ KVT+ VPP+ + + + D+SS++ + G A E V+A
Sbjct: 263 DAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF 322
Query: 326 PHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQ 385
L Q +GM E G V L +P EI G + + V D + +
Sbjct: 323 -GCTLQQVFGMAE-GLVNYTRL---DDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE 377
Query: 386 AGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKG 445
G + RG ++GY E + ++G+ TGDI + D + + R K+ I G
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGG 437
Query: 446 FQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV-RSNGSKITE 494
+VA E+E L+AHP + DAA+V M D+ GE F++ R K E
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAE 487
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/467 (25%), Positives = 198/467 (42%), Gaps = 18/467 (3%)
Query: 45 INGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104
I GD +YA++ + +VA L G+Q GD + + + + +L G
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 105 TTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSE 164
N YT E D + ++ GA + T+ P L +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAA 140
Query: 165 LITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL 224
I DD+ A+ Y+SGTTG G ML+H L ++ VD
Sbjct: 141 AGASEAFATI---DRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRF 193
Query: 225 HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPP 284
+DV++ LP++H + L L +++ + FD +++L+ + V + VP
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPT 251
Query: 285 IVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
+ +S + +R +SG+AP+ + A HA L + YGMTE S
Sbjct: 252 FYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTS 310
Query: 345 MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDR 404
+ P GA G + ++ DP+TG LPR G I + G + GY
Sbjct: 311 NPYDGDRVP-----GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMP 365
Query: 405 EATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
E T + +G+ TGD+G ID+ + I+ R +L+ GF V P E+E+ + A P +
Sbjct: 366 EXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVV 425
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNG---SKITEDEIKQYISKQVIFF 508
++AV+ + GE AFVV S+I +E+ ++ ++ F
Sbjct: 426 ESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXF 472
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 118/464 (25%), Positives = 195/464 (42%), Gaps = 15/464 (3%)
Query: 45 INGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104
I GD +YA++ + +VA L G+Q GD + + + + +L G
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 105 TTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSE 164
N YT E D + ++ GA + T+ P L +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAA 140
Query: 165 LITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL 224
I DD+ A+ Y+SGTTG G ML+H L ++ VD
Sbjct: 141 AGASEAFATI---DRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRF 193
Query: 225 HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPP 284
+DV++ LP++H + L L +++ + FD +++L+ + V + VP
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPT 251
Query: 285 IVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
+ +S + +R +SG+AP+ + A HA L + YGMTE S
Sbjct: 252 FYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTS 310
Query: 345 MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDR 404
+ P GA G + ++ DP+TG LPR G I + G + GY
Sbjct: 311 NPYDGDRVP-----GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMP 365
Query: 405 EATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
E T + +G+ TGD+G ID+ + I+ R +L+ GF V P E+E+ + A P +
Sbjct: 366 EXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVV 425
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVIFF 508
++AV+ + GE AFVV +E ++ + Q+ F
Sbjct: 426 ESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXF 469
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 164/334 (49%), Gaps = 23/334 (6%)
Query: 172 NEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVIL 231
+ I N DD+ ++ ++SGTTG K V T + S G +L ++ L
Sbjct: 153 SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAI----GCKESLGFDRDTNWL 208
Query: 232 CVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
VLP++HI L SVLL A+ G + I+ KF+ +++ +++ ++T VP + + +
Sbjct: 209 SVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ 267
Query: 292 SGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAK 351
G + Y++ I ++ GA +E A++ LP + +GMTE S L
Sbjct: 268 QGLHEPYNLQKI--LLGGAKLSATMIETALQYNLP---IYNSFGMTET---CSQFLTATP 319
Query: 352 EPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI 411
E + G N ++KI +P+ + GE+ I+GA +M GYL + T T
Sbjct: 320 EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGTF- 372
Query: 412 DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPM 471
+ G+ +TGDI ID + + I DR K+LI G + P ++E + P ISDA V
Sbjct: 373 -ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGH 431
Query: 472 KDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
D+ G+VP + V S I++ ++ Y+SK +
Sbjct: 432 PDDTWGQVPKLYFVSE--SDISKAQLIAYLSKHL 463
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/470 (25%), Positives = 199/470 (42%), Gaps = 23/470 (4%)
Query: 33 ENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVF 92
+ +++ DR I G T ++Y +++ + ++AAG KLG+Q+ D +++ L N +F
Sbjct: 33 DRAAKYGDRIAITCGNTH--WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFE 90
Query: 93 AFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYND-KVRDLSEHHGARIVT 151
+GA A P + E Y+ R L+ +++ T
Sbjct: 91 VIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT 150
Query: 152 IDP-----PPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKG 206
+ E L +L T+ ++P VK + DV L S G+TGL K + TH
Sbjct: 151 LKNIIVAGEAEEFLPLEDLHTEP--VKLPEVKSS--DVAFLQLSGGSTGLSKLIPRTHDD 206
Query: 207 LVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV-LLCALRVGAAILIMQKFDIV 265
+ S+ + V+ +L V L LP H Y L+S +L L G +++
Sbjct: 207 YIYSLKRSVE----VCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262
Query: 266 KLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKL 325
L+++ KVT+ VPP+ + + D+SS++ + G A E V+A
Sbjct: 263 DAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF 322
Query: 326 PHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQ 385
L Q +G E G V L +P EI G + V D + +
Sbjct: 323 -GCTLQQVFGXAE-GLVNYTRL---DDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGE 377
Query: 386 AGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKG 445
G + RG ++GY E + ++G+ TGDI + D + + R K+ I G
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGG 437
Query: 446 FQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV-RSNGSKITE 494
+VA E+E L+AHP + DAA V D+ GE F++ R K E
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAE 487
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/463 (25%), Positives = 202/463 (43%), Gaps = 25/463 (5%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TY ++E +R+ A+ L LGV + I+L++ + AFLGA Y G AN TP
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVR---DLSEHHGARIVTIDP---PPENCLHFSELIT 167
+ V + +EH G +++ P P F ELI
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELID 169
Query: 168 QADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKE 227
A A DD+ YSSG+TG PKG + TH L + P L + +
Sbjct: 170 AAAPAAK-AAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAEN 225
Query: 228 DVILCVLPLFHIYSLNSVLLCALRVGA-AILIMQKFDIVKLMELVQKYKVTVAPFVPPIV 286
DV+ LF Y L + L L VGA AIL+ ++ + + +++ TV VP +
Sbjct: 226 DVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
Query: 287 LAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMC 346
+ S ++ +IR S + +E+ + A ++ G G TE +
Sbjct: 286 ANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEM-----LH 339
Query: 347 LAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREA 406
+ + ++ G G V E+++ D + G ++P + G++ I+G Y N+RE
Sbjct: 340 IFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREK 398
Query: 407 TETTIDKEGWLHTGDIGYIDDDDELFI-VDRLKELIKFKGFQVAPAELEAMLIAHPNISD 465
+ T E W+ +GD Y + ++ R +++K G V+P E+E +L+ H + +
Sbjct: 399 SRATFLGE-WIRSGD-KYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLE 456
Query: 466 AAVVPMKDEAAGEVPVAFVVRSNG---SKITEDEIKQYISKQV 505
AAVV + D AFVV S+I +E+K ++ ++
Sbjct: 457 AAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRL 498
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 115/450 (25%), Positives = 191/450 (42%), Gaps = 32/450 (7%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF---VFAFLGASYIGATSTTANPF 110
+Y +++ S +A L++ G+ KGD ++ L N +F FA L A + + ++
Sbjct: 57 SYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQ 116
Query: 111 YTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQ-- 168
Y V+++ S H ++ PE L + T
Sbjct: 117 YELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLH------DVNLSPEIILMLNHQATDFG 170
Query: 169 -ADENEIPA------VKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV--AQQVDGEN 219
D E PA D+V S G+TG PK + TH SV + ++ G N
Sbjct: 171 LLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN 230
Query: 220 PNLYLHKEDVILCVLPLFHIYSLNSV-LLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
N L LC LP H + L+S L L G +++ + + ++Q+++V +
Sbjct: 231 SNTRL------LCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNM 284
Query: 279 APFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTE 338
A VP V+ + K + S++ + G A + L V L + KL Q +GM E
Sbjct: 285 ASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAE 343
Query: 339 AGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMK 398
G V L + E G + + E+KIVD + +P + G + RG
Sbjct: 344 -GLVNYTRLDDSDEQIFTTQGR--PISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFC 399
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
GY E D++ + ++GD+ D L +V R+K+ I G ++A E+E +++
Sbjct: 400 GYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL 459
Query: 459 AHPNISDAAVVPMKDEAAGEVPVAFVVRSN 488
HP + AA+V + DE GE AF+V N
Sbjct: 460 LHPEVMHAALVAIVDEQFGEKSCAFIVSRN 489
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 160/338 (47%), Gaps = 18/338 (5%)
Query: 154 PPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 213
PP L ++ +A +P + D + Y+SGTTG PKG ++ + L T++
Sbjct: 128 PPALGALERVDVDVRA-RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDA 186
Query: 214 QVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQK 273
D EDV++ LPLFH++ L +L LR G ++ + +F +
Sbjct: 187 LADA----WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND 242
Query: 274 YKVTVAPFVPPIVLAVAKSGDVD---KYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKL 330
T+ VP + +A++ D ++ R ++SG+A + + + A ++
Sbjct: 243 -GATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR-RV 300
Query: 331 GQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTG--ISLPRNQAGE 388
+ YGMTE +++ + EP ++G G + E+++V+ D +L GE
Sbjct: 301 IERYGMTET--LMNTSVRADGEP---RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGE 355
Query: 389 ICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDR-LKELIKFKGFQ 447
I +RG + YLN +AT ++G+ TGD+ D D + IV R +LIK G++
Sbjct: 356 IQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYK 415
Query: 448 VAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485
+ E+E L+ HP + +AAV D GE VA++V
Sbjct: 416 IGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIV 453
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 110/459 (23%), Positives = 190/459 (41%), Gaps = 47/459 (10%)
Query: 52 VYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFY 111
++T+ D++ S K A K G+ KGD +ML L++ F + LG +GA + A
Sbjct: 86 IFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHML 145
Query: 112 TPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPP--------ENCLHFS 163
+ + D V + + A I E + F
Sbjct: 146 KTRDIVYRIEKAGLKMIVC--IAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFR 203
Query: 164 ELITQAD---ENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKG-------LVTSVAQ 213
+ + ++ E V +D+ + +SSGT G PK M+ H L Q
Sbjct: 204 KELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHILTAKYWQ 261
Query: 214 QVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ--KFDIVKLMELV 271
V+ + + + CV L G A+ + +F+ ++E
Sbjct: 262 NVEDDGLHYTVADSGWGKCVW---------GKLYGQWIAGCAVFVYDYDRFEAKNMLEKA 312
Query: 272 QKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG 331
KY VT PP + D+ Y+ S+++ + P+ E+ + + KL
Sbjct: 313 SKYGVTTF-CAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRF-LEFTGIKLM 370
Query: 332 QGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICI 391
+G+G TE V+++ EP K G+ G +++++D D G + GEI I
Sbjct: 371 EGFGQTET--VVTIATFPWMEP---KPGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVI 424
Query: 392 RGAQ-----IMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGF 446
+ + Y D E TE T +G+ HTGD+ ++D+D L+ V R ++IK G+
Sbjct: 425 NTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGY 483
Query: 447 QVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485
+V P E+E+ LI HP + + A+ + D G+V A +V
Sbjct: 484 KVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIV 522
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/472 (23%), Positives = 200/472 (42%), Gaps = 44/472 (9%)
Query: 72 LGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEX--------XXXXXXX 123
+GV+KGD + + + P+ + L S IGA + ++
Sbjct: 134 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 193
Query: 124 XXXXXXXXXVYNDKVRD--LSEHHGARIVTIDPPPEN---CLHFSELITQADENE----- 173
+ ++ D L E G R V + N H + A E +
Sbjct: 194 DESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTY 253
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P ++ +D + L Y+SG+TG PKGV + G + + H+EDV
Sbjct: 254 YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTM---RYTFDTHQEDVFFTA 310
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ I V+ L G A L+ + + + +++ ++KVT P + +
Sbjct: 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLL 370
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG--QGYGMTEAGPVLSM 345
++GD ++ + + S+R + S P+ E+ + K+ ++ Y TE+G L
Sbjct: 371 KRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430
Query: 346 CLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQA-GEICIRGAQ------IMK 398
LA P +K G+ + ++DP+TG L + A G + ++ A I K
Sbjct: 431 PLAGGVTP--MKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK 488
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
+ DR G+ TGD D D ++I+ R+ +++ G +++ AE+EA +I
Sbjct: 489 NH--DRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII 546
Query: 459 AHPNISDAAVVPMKDEAAGEVPVAFVV---RSNGSKITEDEIKQYISKQVIF 507
P +++ AVV D+ G+ AFVV +S+ S T+DE+ Q I K ++F
Sbjct: 547 EDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL-QDIKKHLVF 597
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/484 (24%), Positives = 197/484 (40%), Gaps = 100/484 (20%)
Query: 44 IINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103
+N + TY ++ ++ +AA L G + GD ++LL + AFLG Y G
Sbjct: 32 FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
Query: 104 STTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPP------PE 157
A P Y P + +K+ D ++ RIVT P +
Sbjct: 92 ---AVPIYPPAQ--------------------EKLLDKAQ----RIVTNSKPVIVLXIAD 124
Query: 158 NCLHFS--ELITQADENEIPAV----------------KINPDDVVALPYSSGTTGLPKG 199
+ F+ EL T +IPA+ I +D+ L Y+SG+T PKG
Sbjct: 125 HIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKG 184
Query: 200 VMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259
V ++H L+ ++ + + + + E +I LP H L +L + G +
Sbjct: 185 VXVSHHNLLDNLNKIFT----SFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXX 240
Query: 260 QKFDIVK----LMELVQKYKVTVA---PFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAP 312
F ++ ++ + KYK T++ F + + + D+SS T +GA P
Sbjct: 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300
Query: 313 MGKELEDAVRAKLPHAKLGQG-----YGMTEAGPVLS--------MCLAFAKEPFE---- 355
+ +E + + YG+ EA +++ L AKE F+
Sbjct: 301 VREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRV 360
Query: 356 ----------IKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDRE 405
K + G ++ E+KI+DPDT I +Q GEI ++ + KGY N E
Sbjct: 361 HFADDNSPGSYKLVSSGNPIQ--EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPE 418
Query: 406 ATETTI-----DKEG---WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAML 457
T D E +L TGD+G++ ++EL++ R+K+LI G P ++E L
Sbjct: 419 ETRHAFAGKIKDDERSAIYLRTGDLGFL-HENELYVTGRIKDLIIIYGKNHYPQDIEFSL 477
Query: 458 IAHP 461
P
Sbjct: 478 XHSP 481
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 111/468 (23%), Positives = 199/468 (42%), Gaps = 32/468 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ GYG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQY 500
+E +L P +++ V+ + D+ G+ A VV G ++ D + +
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 124/520 (23%), Positives = 213/520 (40%), Gaps = 62/520 (11%)
Query: 8 QEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAA 67
+EF+ P PL + E ++ D P + +G +Y +++ + ++A
Sbjct: 447 REFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTY--SGQTLSYRELDEEANRIAR 504
Query: 68 GLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXX 127
L K G KG V+ L + + V LG GA +P PE
Sbjct: 505 RLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP--KLPEDRISYM------ 556
Query: 128 XXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEI-PAVKINPDDVVA 186
+ + L H + + P F + T+ +E PA I+P+D
Sbjct: 557 -----LADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAY 611
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPL-FHIYSLNSV 245
+ Y+SGTTG PKG + TH + + + VD + +D L V F ++ +
Sbjct: 612 IMYTSGTTGKPKGNITTHAN-IQGLVKHVD----YMAFSDQDTFLSVSNYAFDAFTFD-- 664
Query: 246 LLCALRVGAAILIMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMS 301
A + AA LI+ D +L +L+ + V V F + + D M
Sbjct: 665 -FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVM-FATTALFNLLTDAGEDW--MK 720
Query: 302 SIRTVMSGAAPMGKELEDAVRAKLPHAK-----LGQG-----YGMTEAGPVLSMCLAFAK 351
+R ++ G RA +PH + +G G YG TE G V +
Sbjct: 721 GLRCILFGGE----------RASVPHVRKALRIMGPGKLINCYGPTE-GTVFATAHVVHD 769
Query: 352 EPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREAT-ETT 410
P I S G + NA + I++ + + P GE+CI G + KGY+N + T E
Sbjct: 770 LPDSISSLPIGKPISNASVYILNEQSQLQ-PFGAVGELCISGMGVSKGYVNRADLTKEKF 828
Query: 411 IDK-----EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISD 465
I+ E TGD+ D + R+ + +K +G ++ E+E L +P + D
Sbjct: 829 IENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKD 888
Query: 466 AAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
A VV + E+ A++V N ++++ +++K ++ KQ+
Sbjct: 889 AVVVADRHESGDASINAYLV--NRTQLSAEDVKAHLKKQL 926
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 111/468 (23%), Positives = 198/468 (42%), Gaps = 32/468 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN EAT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQY 500
+E +L P +++ V+ + D+ G+ A VV G ++ D + +
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/468 (23%), Positives = 198/468 (42%), Gaps = 32/468 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQY 500
+E +L P +++ V+ + D+ G+ A VV G ++ D + +
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 119/485 (24%), Positives = 198/485 (40%), Gaps = 96/485 (19%)
Query: 38 FADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGA 97
F DR C + D Y ++ + A L L ++KGD + L+ + +FV AF
Sbjct: 38 FYDRRCQLE----DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFAC 93
Query: 98 SYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDL-SEHHGARIVTID--- 153
Y G A P P ++ K++ L + A I+T D
Sbjct: 94 QYAG---LVAVPLAIP------------XGVGQRDSWSAKLQGLLASCQPAAIITGDEWL 138
Query: 154 PPPENCLHFS---ELITQADENEIPAVKIN-----PDDVVALPYSSGTTGLPKGVMLTHK 205
P H + +++ A +P + P+D+ L Y+SG+T P+GV++TH+
Sbjct: 139 PLVNAATHDNPELHVLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHR 198
Query: 206 GLVTSV-AQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLC--ALRVGAAILIMQKF 262
+ ++ A DG + L D + LP +H L LL A ++ L Q F
Sbjct: 199 EVXANLRAISHDG----IKLRPGDRCVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDF 254
Query: 263 DI--VKLMELVQKYKVTVA---PFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKE- 316
++ ++L+ K + TV+ PF + D+ + D+S R GA P+ E
Sbjct: 255 AXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQ 314
Query: 317 ----LEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKI 372
E + + YG+ E ++ ++F+ E A G VV + I
Sbjct: 315 LHQFAECFRQVNFDNKTFXPCYGLAEN----ALAVSFSDE-------ASGVVVNEVDRDI 363
Query: 373 VD-------------------------PDTGISLPRNQA---------GEICIRGAQIMK 398
++ P+ GI + RN+A G ICI G +
Sbjct: 364 LEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEI-RNEAGXPVAERVVGHICISGPSLXS 422
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
GY D + ++ I GWL TGD+GY+ D L++ R+K+LI +G + P ++E +
Sbjct: 423 GYFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAE 480
Query: 459 AHPNI 463
P I
Sbjct: 481 QEPEI 485
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 110/468 (23%), Positives = 198/468 (42%), Gaps = 32/468 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQY 500
+E +L P +++ V+ + D+ G+ A VV G ++ D + +
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 110/468 (23%), Positives = 198/468 (42%), Gaps = 32/468 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A M + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA M + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEA-----MNSLYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ ++I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQY 500
+E +L P +++ V+ + D+ G+ A VV G ++ D + +
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/468 (23%), Positives = 195/468 (41%), Gaps = 34/468 (7%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTA------ 107
+Y ++ + +A L + G++ G+ ++ L N + F +G A
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111
Query: 108 ---NPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTI--DPPPENCLHF 162
N + + E N V +EH R+V + D N
Sbjct: 112 SELNAYASQIEPALLIADRQHALFSGDDFLNTFV---TEHSSIRVVQLLNDSGEHN---L 165
Query: 163 SELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL 222
+ I E+ A D+V S GTTG PK + TH SV + V+
Sbjct: 166 QDAINHPAED-FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----IC 220
Query: 223 YLHKEDVILCVLPLFHIYSLNSV-LLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPF 281
++ LC +P H Y+++S L G +++ L++K++V V
Sbjct: 221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTAL 280
Query: 282 VPPIV---LAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTE 338
VPP V L G+ + ++S++ + G A + L + A++ +L Q +GM E
Sbjct: 281 VPPAVSLWLQALIEGE-SRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAE 338
Query: 339 AGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMK 398
G V L + E G + + E+ + D + G LP+ + G + RG +
Sbjct: 339 -GLVNYTRLDDSAEKIIHTQGY--PMCPDDEVWVADAE-GNPLPQGEVGRLMTRGPYTFR 394
Query: 399 GYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI 458
GY + + D G+ +GD+ ID + + + R K+ I G ++A E+E +L+
Sbjct: 395 GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL 454
Query: 459 AHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVI 506
HP + AA+V M+DE GE A++V + ++++++ +Q I
Sbjct: 455 RHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAV--QVRRFLREQGI 500
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 109/457 (23%), Positives = 195/457 (42%), Gaps = 34/457 (7%)
Query: 45 INGPTGDV-YTYADVELTSRKVAAGLS-KLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA 102
+NG ++ + + ++ S++ A LS G+Q+GD + ++L P++ LG G
Sbjct: 65 VNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 103 TSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRD-----LSEHHGARI--VTIDPP 155
T V D+V SE RI + +
Sbjct: 125 IFMPG----TIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKS 180
Query: 156 PENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 215
+ L+F +L+ +A V+ + A+ ++SGT+GLPK M H + ++
Sbjct: 181 CDGWLNFKKLLNEASTTH-HCVETGSQEASAIYFTSGTSGLPK--MAEHSYSSLGLKAKM 237
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI--MQKFDIVKLMELVQK 273
D L D++ + I ++ L+ +GA + + KFD + +++ +
Sbjct: 238 DAGWTGL--QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSS 295
Query: 274 YKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQG 333
Y + + PIV + D+ Y ++ ++ + E + RA+ + +
Sbjct: 296 YPIK-SMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRES 353
Query: 334 YGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG 393
YG TE G C+ + +IK G GT +++I+D D G LP G+I IR
Sbjct: 354 YGQTETGLT---CMV--SKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRV 407
Query: 394 A-----QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQV 448
I GY+++ + T I + WL GD G D+D + R ++I G+++
Sbjct: 408 KPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRI 466
Query: 449 APAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485
P+E+E L+ HP + + AV+ D GEV AFVV
Sbjct: 467 GPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 109/457 (23%), Positives = 195/457 (42%), Gaps = 34/457 (7%)
Query: 45 INGPTGDV-YTYADVELTSRKVAAGLS-KLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA 102
+NG ++ + + ++ S++ A LS G+Q+GD + ++L P++ LG G
Sbjct: 65 VNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 103 TSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRD-----LSEHHGARI--VTIDPP 155
T V D+V SE RI + +
Sbjct: 125 IFMPG----TIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKS 180
Query: 156 PENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 215
+ L+F +L+ +A V+ + A+ ++SGT+GLPK M H + ++
Sbjct: 181 CDGWLNFKKLLNEASTTH-HCVETGSQEASAIYFTSGTSGLPK--MAEHSYSSLGLKAKM 237
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI--MQKFDIVKLMELVQK 273
D L D++ + I ++ L+ +GA + + KFD + +++ +
Sbjct: 238 DAGWTGL--QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSS 295
Query: 274 YKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQG 333
Y + + PIV + D+ Y ++ ++ + E + RA+ + +
Sbjct: 296 YPIK-SMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRES 353
Query: 334 YGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG 393
YG TE G C+ + +IK G GT +++I+D D G LP G+I IR
Sbjct: 354 YGQTETGLT---CMV--SKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRV 407
Query: 394 A-----QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQV 448
I GY+++ + T I + WL GD G D+D + R ++I G+++
Sbjct: 408 KPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRI 466
Query: 449 APAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485
P+E+E L+ HP + + AV+ D GEV AFVV
Sbjct: 467 GPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 110/468 (23%), Positives = 196/468 (41%), Gaps = 32/468 (6%)
Query: 43 CIINGPT-GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
C + P G T+A++ VAA L G++ + ++ N V A L +G
Sbjct: 19 CALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 102 ATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLH 161
A NP E GARI+ + + +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVR 134
Query: 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGE 218
E + E P + P + Y+SGTTGLPK ++ + + V + QV
Sbjct: 135 DGEPYSYGPPIEDP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQV--- 189
Query: 219 NPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
L + +V+L + PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT
Sbjct: 190 --GLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT- 246
Query: 279 APFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335
+ F P L + + S+R V A + + V LP K+ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI-YG 305
Query: 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGIS--LPRNQAGEICIRG 393
TEA L + ++P K+G +E++IV G+ + + GE+ +
Sbjct: 306 TTEAXNSL-----YXRQP---KTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 394 A-QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAE 452
+ GYLN +AT + ++GW T D+ + + I+ R+ + I G + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSE 416
Query: 453 LEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQY 500
+E +L P +++ V+ + D+ G+ A VV G ++ D + +
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 117/525 (22%), Positives = 214/525 (40%), Gaps = 56/525 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQ--IMKGYLNDRE 405
A E+K+G+ + +VD + G G + I + + D E
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHE 482
Query: 406 ATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNI 463
E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP I
Sbjct: 483 RFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKI 542
Query: 464 SDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQV 505
++AAVV + G+ A+V ++G + + + E++ ++ K++
Sbjct: 543 AEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 117/525 (22%), Positives = 215/525 (40%), Gaps = 56/525 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQ--IMKGYLNDRE 405
A E+K+G+ + +VD + G G + I + + D E
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHE 482
Query: 406 ATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNI 463
E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP I
Sbjct: 483 RFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKI 542
Query: 464 SDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQV 505
++AAVV + G+ A+V ++G + + + E++ +++K++
Sbjct: 543 AEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEI 587
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 214/527 (40%), Gaps = 60/527 (11%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGE----ICIRGAQIMKGYLND 403
A E+K+G+ + +VD + P+ A E I + D
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQARTLFGD 480
Query: 404 REATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP
Sbjct: 481 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540
Query: 462 NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQV 505
I++AAVV + G+ A+V ++G + + + E++ ++ K++
Sbjct: 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEI 587
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 214/527 (40%), Gaps = 60/527 (11%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGE----ICIRGAQIMKGYLND 403
A E+K+G+ + +VD + P+ A E I + D
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQARTLFGD 480
Query: 404 REATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP
Sbjct: 481 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540
Query: 462 NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQV 505
I++AAVV + G+ A+V ++G + + + E++ ++ K++
Sbjct: 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 214/527 (40%), Gaps = 60/527 (11%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGE----ICIRGAQIMKGYLND 403
A E+K+G+ + +VD + P+ A E I + D
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQARTLFGD 480
Query: 404 REATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP
Sbjct: 481 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP 540
Query: 462 NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQV 505
I++AAVV + G+ A+V ++G + + + E++ ++ K++
Sbjct: 541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/525 (22%), Positives = 214/525 (40%), Gaps = 56/525 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGA 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQ--IMKGYLNDRE 405
A E+K+G+ + +VD + G G + I + + D E
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHE 482
Query: 406 ATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNI 463
E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP I
Sbjct: 483 RFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKI 542
Query: 464 SDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQV 505
++AAVV + G+ A+V ++G + + + E++ ++ K++
Sbjct: 543 AEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/525 (22%), Positives = 214/525 (40%), Gaps = 56/525 (10%)
Query: 25 LPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
L L C + ++ + DR II + +Y ++ + A L LG++KGDV
Sbjct: 75 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDV 134
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EXXXXXX 121
+ + + P+ A L + IGA + ++P E
Sbjct: 135 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR 194
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENEIPAVK 178
+ N V + EH T ID L + +LI +A P
Sbjct: 195 SIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA- 252
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL---HKEDVILCVLP 235
+N +D + + Y+SG+TG PKGV+ T G + A Y+ H D+ C
Sbjct: 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK------YVFDYHPGDIYWCTAD 306
Query: 236 LFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366
Query: 292 SGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSMCL 347
GD ++ D SS+R + S P+ E + K+ K + + TE G + L
Sbjct: 367 EGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426
Query: 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQ--IMKGYLNDRE 405
A E+K+G+ + +VD + G G + I + + D E
Sbjct: 427 PGA---IELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHE 482
Query: 406 ATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNI 463
E T + +GD D+D +I R+ +++ G ++ AE+E+ L+AHP I
Sbjct: 483 RFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKI 542
Query: 464 SDAAVVPMKDEAAGEVPVAFVVRSNGSKITED---EIKQYISKQV 505
++AAVV + G+ A+V ++G + + + E++ ++ K++
Sbjct: 543 AEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 113/480 (23%), Positives = 187/480 (38%), Gaps = 66/480 (13%)
Query: 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF 110
D TY + + ++A L LGV G ++ + L+ V A L G T +P
Sbjct: 99 DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQ 158
Query: 111 YTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQAD 170
+ P E E GA ++ P L + + D
Sbjct: 159 F-PVERLALSL---------------------EDTGAPLLVTSRPLSGRLTGTTTLYVED 196
Query: 171 E--NEIPA----VKINPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNLY 223
E ++ PA + P+DV + ++SG+TG PKGVM H+ L T + Q G P+
Sbjct: 197 EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPD-- 254
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM--QKFDIVKLMELVQKYKVTVAPF 281
E + C + + L L AL GA ++ Q D +++ ELV ++ VT+
Sbjct: 255 ---EVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQL 309
Query: 282 VPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGP 341
+ + D +R ++G P R P +LG GYG E+
Sbjct: 310 SASLFNFLV---DEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES-- 364
Query: 342 VLSMCLAFAKEPFEIKSGACGTVV------RNAEMKIVDPDTGISLPRNQA-GEICIRGA 394
+ F + GT + ++D D + N A GE+ + GA
Sbjct: 365 -----MGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDD--LKPAANGALGELYVAGA 417
Query: 395 QIMKGYLNDREATETTI--------DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGF 446
+ GY++ T E TGD+ D L V R + +K +GF
Sbjct: 418 GLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGF 477
Query: 447 QVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE-DEIKQYISKQV 505
+V P E+EA L+ HP + AAV+ + VA+VV + E+++++++ +
Sbjct: 478 RVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEAL 537
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 156/341 (45%), Gaps = 46/341 (13%)
Query: 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSL 242
D+ + Y+SGTTG PKG ML HKG+ +V EN +L + ++D I + S+
Sbjct: 183 DLAYVIYTSGTTGNPKGTMLEHKGISNL---KVFFEN-SLNVTEKDRIGQFASISFDASV 238
Query: 243 NSVLLCALRVGAAILIMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD 299
+ + AL GA++ I+ K D VK + + + ++TV P V+ +D
Sbjct: 239 WEMFM-ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV------HLDPER 291
Query: 300 MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSG 359
+ SI+T+++ + L + + K+ + YG TE + +A KE S
Sbjct: 292 ILSIQTLITAGSATSPSLVNKWKEKVTYIN---AYGPTETTICATTWVA-TKETIG-HSV 346
Query: 360 ACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATET---------- 409
G ++N ++ IVD + + +AGE+CI G + +GY E T
Sbjct: 347 PIGAPIQNTQIYIVDENLQLK-SVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405
Query: 410 -----TIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNIS 464
T D+ WL G+I Y+ R+ +K +G +V E+E++L+ H IS
Sbjct: 406 EKLYKTGDQARWLSDGNIEYL---------GRIDNQVKIRGHRVELEEVESILLKHMYIS 456
Query: 465 DAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
+ AV KD A+ V I ++++Q+ S+++
Sbjct: 457 ETAVSVHKDHQEQPYLCAYFVSE--KHIPLEQLRQFSSEEL 495
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 161/386 (41%), Gaps = 23/386 (5%)
Query: 136 DKVRDLSEHHGARI------VTIDPPPENCLHFSEL----ITQADENEIPAVKINPDDVV 185
D+V+ ++E+ GA++ VT+ P + L T P + D+
Sbjct: 88 DRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENF 147
Query: 186 ALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV 245
+ Y+SG+TG PKGV +T+ LV+ V+ N L V L P S+ +
Sbjct: 148 YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQAPFSFDLSVMDI 203
Query: 246 LLCALRVGAAILIMQKFDIVK---LMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSS 302
+L G + + K I + L +++ + V P + + +
Sbjct: 204 -YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPN 262
Query: 303 IRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACG 362
++T + + E+ + + P A + YG TEA ++ + + KS G
Sbjct: 263 MKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG 322
Query: 363 TVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATE---TTIDKEGWLHT 419
+ + I+ D I+ P + GEI I G + GYL E TE T ID E T
Sbjct: 323 YCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKT 381
Query: 420 GDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEV 479
GD GY+ ++ LF RL IK G+++ E+E L A + A +VP+K +
Sbjct: 382 GDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDY 440
Query: 480 PVAFVVRSNGSKITEDEIKQYISKQV 505
+A VV S E ++ I K++
Sbjct: 441 LLAVVVPGEHSFEKEFKLTSAIKKEL 466
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 161/386 (41%), Gaps = 23/386 (5%)
Query: 136 DKVRDLSEHHGARI------VTIDPPPENCLHFSEL----ITQADENEIPAVKINPDDVV 185
D+V+ ++E+ GA++ VT+ P + L T P + D+
Sbjct: 88 DRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENF 147
Query: 186 ALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV 245
+ Y+SG+TG PKGV +T+ LV+ V+ N L V L P S+ +
Sbjct: 148 YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQAPFSFDLSVMDI 203
Query: 246 LLCALRVGAAILIMQKFDIVK---LMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSS 302
+L G + + K I + L +++ + V P + + +
Sbjct: 204 -YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPN 262
Query: 303 IRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACG 362
++T + + E+ + + P A + YG TEA ++ + + KS G
Sbjct: 263 MKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG 322
Query: 363 TVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATE---TTIDKEGWLHT 419
+ + I+ D I+ P + GEI I G + GYL E TE T ID E T
Sbjct: 323 YCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKT 381
Query: 420 GDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEV 479
GD GY+ ++ LF RL IK G+++ E+E L A + A +VP+K +
Sbjct: 382 GDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDY 440
Query: 480 PVAFVVRSNGSKITEDEIKQYISKQV 505
+A VV S E ++ I K++
Sbjct: 441 LLAVVVPGEHSFEKEFKLTSAIKKEL 466
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 19/321 (5%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYS 241
DD + ++SGTTG PKGV ++H L++ + E+ + K+ +L P YS
Sbjct: 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMI--EDAAFDVPKQPQMLAQPP----YS 198
Query: 242 LN-SVLLCA--LRVGAAILIMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDV 295
+ SV+ A L +G + + K D +L + + V + P S D
Sbjct: 199 FDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF 258
Query: 296 DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFE 355
+ M ++ + + + P AK+ YG TEA LS + +E +
Sbjct: 259 CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALS-AIEITREMVD 317
Query: 356 IKSG-ACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATET---TI 411
+ G ++ I+D D G L + GEI + G + KGYLN+ E T T
Sbjct: 318 NYTRLPIGYPKPDSPTYIIDED-GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTF 376
Query: 412 DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPM 471
+ HTGDIG + +D+ L RL IK+ G+++ ++ L P ++ A VP
Sbjct: 377 KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPR 436
Query: 472 KD-EAAGEVPVAFVVRSNGSK 491
+ E + +A++V +G K
Sbjct: 437 YNKEHKVQNLLAYIVVKDGVK 457
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/475 (23%), Positives = 189/475 (39%), Gaps = 52/475 (10%)
Query: 50 GDVYTYADVELTSRKVAAGLSK-LGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTAN 108
G TY ++ S + AA + K + +K I++ P + +FLG S A
Sbjct: 24 GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG-------SVKAG 76
Query: 109 PFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIV------TIDPPPENCLHF 162
Y P + + ++++ + E GA ++ +ID +
Sbjct: 77 HPYIPVDLS---------------IPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV 121
Query: 163 S--ELITQADENEIPAVK----INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 216
S EL+ ENE +V + + + Y+SG+TG PKGV ++ L S +
Sbjct: 122 SAEELL----ENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANL-QSFTDWIC 176
Query: 217 GENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVK---LMELVQK 273
+ P + + L P S+ + C L+ G + + K + K L E ++K
Sbjct: 177 ADFP---VSGGKIFLNQAPFSFDLSVMDLYPC-LQSGGTLHCVTKDAVNKPKVLFEELKK 232
Query: 274 YKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQG 333
+ V P V + + T M + + A+ + P AK+
Sbjct: 233 SGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNT 292
Query: 334 YGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG 393
YG TEA ++ +S G + + I+D + G LP + GEI I G
Sbjct: 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAG 351
Query: 394 AQIMKGYLNDREATETT-IDKEG-WLH-TGDIGYIDDDDELFIVDRLKELIKFKGFQVAP 450
+ +GYL + E TE EG W + TGD G+I D ++F RL IK G+++
Sbjct: 352 PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMEL 410
Query: 451 AELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
E+E + + A V+P + E +A +V E ++ I K++
Sbjct: 411 EEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKEL 465
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 158/351 (45%), Gaps = 37/351 (10%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-LHKEDVILCVLPLFHIY 240
+D+ + Y+SGTTG PKGV + H ++ +A P+++ +D L LFH
Sbjct: 175 EDMAYVIYTSGTTGNPKGVPVRHANVLALLAGA-----PSVFDFSGDDRWL----LFHSL 225
Query: 241 SLN-SV--LLCALRVGAAILIMQKFDIV---KLMELVQKYKVTVAPFVPPIVLAVAKSGD 294
S + SV + A GA ++++ + + + ++ VTV P LA+ ++
Sbjct: 226 SFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAV 285
Query: 295 VDKYDMSSIRTVMSGA----APMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFA 350
D+S +R V+ G APM + A L +L GYG+TE V +
Sbjct: 286 RGGRDVSGLRYVIFGGEKLTAPMLRPWAKAF--GLDRPRLVNGYGITET-TVFTTFEEIT 342
Query: 351 KEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREAT--- 407
+ + G + + ++V D G + + GE+ + GAQ+ +GYL E T
Sbjct: 343 EAYLAQDASIIGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEK 401
Query: 408 --ETTIDKEG----WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHP 461
E T +K G + TGD+ D R IK +G+++ +++E + H
Sbjct: 402 FPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRH- 460
Query: 462 NISDAAVVPMKDEAAGEVPV--AFVVRSNGSKITEDEIKQYISKQVIFFSH 510
+ AVV +++ G++ + A+V R GS T E++ +I + + H
Sbjct: 461 DDVVDAVVTVREFKPGDLRLVCAYVAR-EGSATTARELRNHIKTLLPAYMH 510
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 65/304 (21%)
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKED-------VILCVLPLFHI 239
L Y+SG+T P GV+++H+ + + Q + G Y D ++ LP +H
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSG-----YFADTDGIPPPNSALVSWLPFYHD 242
Query: 240 YSLNSVLLCALRVGA--AIL-----IMQKFDIVKLMELVQK--YKVTVAP-FVPPIVLAV 289
L + +CA +G A+L +Q+ + M L+ + + AP F +
Sbjct: 243 MGL-VIGICAPILGGYPAVLTSPVSFLQR--PARWMHLMASDFHAFSAAPNFAFELAARR 299
Query: 290 AKSGDVDKYDMSSIRTVMSG-----AAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
D+ D+ +I T++SG AA + + + R L + Y + EA +
Sbjct: 300 TTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEA--TVY 357
Query: 345 MCLAFAKEP-----FEIKSGACG----------------TVVRNAEMKIVDPDTGISLPR 383
+ + +P F+ +S + G + R+ ++IVD DT I P
Sbjct: 358 VATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPD 417
Query: 384 NQAGEICIRGAQIMKGYLNDREATETTIDK----------EG-WLHTGDIGYIDDDDELF 432
GEI + G + GY + +E T EG WL TGD G++ D ++F
Sbjct: 418 GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV-TDGKMF 476
Query: 433 IVDR 436
I+ R
Sbjct: 477 IIGR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 122/303 (40%), Gaps = 63/303 (20%)
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKED-------VILCVLPLFHI 239
L Y+SG+T P GV+ +H+ + + Q G Y D ++ LP +H
Sbjct: 188 LQYTSGSTRTPAGVVXSHQNVRVNFEQLXSG-----YFADTDGIPPPNSALVSWLPFYHD 242
Query: 240 YSLNSVLLCALRVG-------AAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKS 292
L + +CA +G + + +Q+ + + + AP LA ++
Sbjct: 243 XGL-VIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFHAFSAAPNFA-FELAARRT 300
Query: 293 GDVDK--YDMSSIRTVMSG-----AAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSM 345
D D D+ +I T++SG AA + + + R L + YG+ EA + +
Sbjct: 301 TDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEA--TVYV 358
Query: 346 CLAFAKEP-----FEIKSGACG----------------TVVRNAEMKIVDPDTGISLPRN 384
+ +P F+ +S + G + R+ ++IVD DT I P
Sbjct: 359 ATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIVRIVDSDTCIECPDG 418
Query: 385 QAGEICIRGAQIMKGYLNDREATETTIDK----------EG-WLHTGDIGYIDDDDELFI 433
GEI + G + GY + +E T EG WL TGD G++ D + FI
Sbjct: 419 TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV-TDGKXFI 477
Query: 434 VDR 436
+ R
Sbjct: 478 IGR 480
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 123/320 (38%), Gaps = 23/320 (7%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGLVT-SVAQQVDGENPNLYLHKEDVILCVLPLFHIY 240
D + + +SSGTTG PK + TH G+ + Q P + L PL
Sbjct: 164 DQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMR------FLVNSPLSFDA 217
Query: 241 SLNSVLLCALRVGAAILI-MQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD 299
+ + L G +L + D L +L+ + A + + D+D
Sbjct: 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLV---DLDPDC 274
Query: 300 MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG--QGYGMTEAGPVLSMCLAFAKEPFEIK 357
+ +R +++G + + RA L H +L GYG TE + C + E
Sbjct: 275 LGGLRQLLTGGDIL--SVPHVRRALLRHPRLHLVNGYGPTE-NTTFTCCHVVTDDDLEED 331
Query: 358 SGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETT---IDKE 414
G + + ++D ++AGEI GA + +GY ND T + +
Sbjct: 332 DIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYR 391
Query: 415 GWL----HTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVP 470
G L TGD D+ L + R +K G+++ LE P I D A++
Sbjct: 392 GRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLV 451
Query: 471 MKDEAAGEVPVAFVVRSNGS 490
+ ++ A+ +++ S
Sbjct: 452 RERNGVKQLLCAWTGKADAS 471
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 139/368 (37%), Gaps = 57/368 (15%)
Query: 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF 110
D TY + + ++A L LGV G ++ + L+ V A L G T +P
Sbjct: 99 DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQ 158
Query: 111 YTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQAD 170
+ P E E GA ++ P L + + D
Sbjct: 159 F-PVERLALSL---------------------EDTGAPLLVTSRPLSGRLTGTTTLYVED 196
Query: 171 E--NEIPA----VKINPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNLY 223
E ++ PA + P+DV + ++SG+TG PKGVM H+ L T + Q G P+
Sbjct: 197 EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPD-- 254
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM--QKFDIVKLMELVQKYKVTVAPF 281
E + C + + L L AL GA ++ Q D +++ ELV ++ VT+
Sbjct: 255 ---EVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQL 309
Query: 282 VPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGP 341
+ + D +R ++G P R P +LG GYG E+
Sbjct: 310 SASLFNFLV---DEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES-- 364
Query: 342 VLSMCLAFAKEPFEIKSGACGTV------VRNAEMKIVDPDTGISLPRNQA-GEICIRGA 394
+ F + GT + ++D D + N A GE+ + GA
Sbjct: 365 -----MGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDD--LKPAANGALGELYVAGA 417
Query: 395 QIMKGYLN 402
+ GY++
Sbjct: 418 GLAHGYVS 425
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 134/319 (42%), Gaps = 25/319 (7%)
Query: 152 IDPPPENCL------HFSELITQADENEIPAVKINPDDVVA-LPYSSGTTGLPKGVMLTH 204
++ PPE + F E ++ D ++I + P+++ A L Y+SG+TG PKGV ++
Sbjct: 140 VELPPETKVLDTKNQSFIENLSTQDTSDI--LNNYPENLDAYLLYTSGSTGTPKGVRVSR 197
Query: 205 KGLVT---SVAQQVDGENP-NLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ 260
L + + + + P +L L LC+ + L A R G + +
Sbjct: 198 HNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEXFL-AWRFGLCAVTGE 256
Query: 261 KFDIVK-LMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELED 319
+ + L ++ VT A VP ++ ++G V + + + G + +
Sbjct: 257 RLSXLDDLPRTFRELGVTHAGIVPSLL---DQTGLVPEDAPHLVYLGVGGEKXTPRTQQ- 312
Query: 320 AVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGI 379
+ + L YG TE V C A P + + G + ++ ++ P +
Sbjct: 313 -IWSSSDRVALVNVYGPTE---VTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNE 367
Query: 380 SLPRNQAGEICIRGAQIMKGYLNDREATE-TTIDKEGWLHTGDIGYIDDDDELFIVDRLK 438
+ + AGE+ I G+ + GYLN +A I+ TGDI D D + + R
Sbjct: 368 HVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKD 427
Query: 439 ELIKFKGFQVAPAELEAML 457
E +K +G ++ E+ ++
Sbjct: 428 EQVKVRGQRLELGEVSEVI 446
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 249 ALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--MSSIRTV 306
A R G ++ K ++L+Q ++ + P +L++A + D SS+R
Sbjct: 156 AERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIG 215
Query: 307 MSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVR 366
+ GA P ++ A+ ++ + YG++E M A E E K G T+
Sbjct: 216 IFGAEPWTNDMRVAIEQRMGIDAV-DIYGLSEV-----MGPGVASECVETKDGP--TIWE 267
Query: 367 NAEM-KIVDPDTGISLPRNQAGEIC 390
+ +I+DP+TG LP + GE+
Sbjct: 268 DHFYPEIIDPETGEVLPDGELGELV 292
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 132/342 (38%), Gaps = 53/342 (15%)
Query: 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSL 242
D V + SSGTTG P ++ + L S A V + + K DV
Sbjct: 87 DGVRIHSSSGTTGNPTVIVHSQHDL-DSWANLVARCLYXVGIRKTDVFQNSSGYGXFTGG 145
Query: 243 NSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--M 300
A R+G + + + ++ + +K T +P + +A+ + D
Sbjct: 146 LGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRE 205
Query: 301 SSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA-GPVLSMCLAFAKEPFEIKSG 359
++++T++ GA P E + L + K +G TE GP ++ FE +
Sbjct: 206 TTLKTLVIGAEPHTDEQRRKIERXL-NVKAYNSFGXTEXNGPGVA---------FECQEQ 255
Query: 360 ACGTVVRNAEM-KIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEG--- 415
+ + +I+DP+TG +P + GE+ + TT+D+E
Sbjct: 256 NGXHFWEDCYLVEIIDPETGEPVPEGEIGELVL-----------------TTLDREXXPL 298
Query: 416 -WLHTGDI-----GYIDDDDELFIVDRLK----ELIKFKGFQVAPAELEAMLIAHPNISD 465
T D+ G +DR+K + KG + P ++E +L+ P +
Sbjct: 299 IRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDXFIIKGVNIFPXQVEKILVQFPELGS 358
Query: 466 AAVVPM-----KDEAAGEVPVAFVVRSNG---SKITEDEIKQ 499
++ + +DE EV ++ + N KI D I+Q
Sbjct: 359 NYLITLETVNNQDEXIVEVELSDLSTDNYIELEKIRRDIIRQ 400
>pdb|3UXA|A Chain A, Designed Protein Ke59 R1 710H
pdb|3UXA|B Chain B, Designed Protein Ke59 R1 710H
pdb|3UXD|A Chain A, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
pdb|3UXD|B Chain B, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
Length = 252
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 248 CALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVM 307
ALR+GA I+I+ D+ + +E+ ++ + + +P V+ VA SG ++ ++ +R +
Sbjct: 168 IALRIGARIIIISSRDL-ETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLG 226
Query: 308 SGAAPMGKEL 317
A +G L
Sbjct: 227 VNAFEIGSSL 236
>pdb|3UY7|A Chain A, Designed Protein Ke59 R1 710H WITH G130S MUTATION
pdb|3UY7|B Chain B, Designed Protein Ke59 R1 710H WITH G130S MUTATION
Length = 252
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 248 CALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVM 307
ALR+GA I+I+ D+ + +E+ ++ + + +P V+ VA SG ++ ++ +R +
Sbjct: 168 IALRIGARIIIISSRDL-ETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLG 226
Query: 308 SGAAPMGKEL 317
A +G L
Sbjct: 227 VNAFEIGSSL 236
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 249 ALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--MSSIRTV 306
A R G ++ K ++L+Q ++ + P L++A + D SS+R
Sbjct: 156 AERAGLTVIPFGGGQTEKQVQLIQDFRPDIIXVTPSYXLSIADEIERQGLDPVQSSLRIG 215
Query: 307 MSGAAPMGKELEDAV--RAKLPHAKLGQGYGMTEA-GPVLSMCLAFAKEPFEIKSGACGT 363
+ GA P + A+ R + + YG++E GP A E E K G T
Sbjct: 216 IFGAEPWTNDXRVAIEQRXGIDAVDI---YGLSEVXGP------GVASECVETKDGP--T 264
Query: 364 VVRNAEM-KIVDPDTGISLPRNQAGEIC 390
+ + +I+DP+TG LP + GE+
Sbjct: 265 IWEDHFYPEIIDPETGEVLPDGELGELV 292
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 134/344 (38%), Gaps = 52/344 (15%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGL-----VTSVAQQVDGENPNLYLHKEDVILCVLPL 236
+ VV + SSGTTG P V T + + VT+ + + G P LH
Sbjct: 92 EQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGG 151
Query: 237 FHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVD 296
I+ A R+G ++ M K ++L++ ++ + P +L +
Sbjct: 152 LGIH------YGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQ 205
Query: 297 KYD--MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPF 354
D SS++ + GA P + L + V ++ L YG++E M A E
Sbjct: 206 GMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDAL-DIYGLSEV-----MGPGVACECV 259
Query: 355 EIKSGACGTVVRNAEM--KIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID 412
E K G V+ +I+DP TG LP GE+ T++
Sbjct: 260 ETKDGP---VIWEDHFYPEIIDPVTGEVLPDGSQGELVF-----------------TSLT 299
Query: 413 KEGW----LHTGDIGYIDDDDELF------IVDRLKELIKFKGFQVAPAELEAMLIAHPN 462
KE T D+ + I R +++ +G V P+++E +++A P
Sbjct: 300 KEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPL 359
Query: 463 ISDAAVVPM-KDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV 505
+S + + +D + +A +RS + D + +++++
Sbjct: 360 LSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALAREL 403
>pdb|3RQT|A Chain A, 1.5 Angstrom Crystal Structure Of The Complex Of Ligand
Binding Component Of Abc-Type Import System From
Staphylococcus Aureus With Nickel And Two Histidines
Length = 486
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 388 EICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGY 424
EI I+ ++GYL DR A + T G + GD GY
Sbjct: 358 EIDIKSVDDIEGYLKDRSAWDATXYSFGTIPRGDTGY 394
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 63 RKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
R + +GL KLG+ KGDV L+ QN + F ++++G
Sbjct: 320 RIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSAWLG 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,781,572
Number of Sequences: 62578
Number of extensions: 606815
Number of successful extensions: 1697
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 106
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)