Query 010425
Match_columns 511
No_of_seqs 182 out of 2065
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 06:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.2E-82 4.2E-87 650.6 55.1 503 7-510 4-506 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 6.9E-77 2.3E-81 609.0 52.6 496 7-510 7-513 (548)
3 3rix_A Luciferase, luciferin 4 100.0 4.6E-77 1.6E-81 611.4 43.5 495 8-510 4-511 (550)
4 3tsy_A Fusion protein 4-coumar 100.0 4.7E-77 1.6E-81 650.0 43.2 504 7-510 43-553 (979)
5 3g7s_A Long-chain-fatty-acid-- 100.0 2.6E-76 9E-81 605.6 44.9 484 13-510 8-513 (549)
6 4fuq_A Malonyl COA synthetase; 100.0 7.4E-76 2.5E-80 595.5 47.1 467 29-510 4-471 (503)
7 3etc_A AMP-binding protein; ad 100.0 5.6E-74 1.9E-78 590.1 51.8 477 21-510 51-550 (580)
8 3r44_A Fatty acyl COA syntheta 100.0 1.1E-74 3.7E-79 589.0 41.4 473 19-510 10-484 (517)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.2E-74 1.1E-78 588.5 43.6 469 24-510 24-502 (539)
10 3o83_A Peptide arylation enzym 100.0 6.8E-75 2.3E-79 594.1 37.1 476 21-510 26-511 (544)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 4E-73 1.4E-77 576.3 48.5 458 25-510 2-475 (504)
12 1v25_A Long-chain-fatty-acid-C 100.0 1.4E-73 4.9E-78 583.9 40.6 476 24-510 17-507 (541)
13 1pg4_A Acetyl-COA synthetase; 100.0 6E-73 2.1E-77 590.4 45.2 477 26-510 77-592 (652)
14 3c5e_A Acyl-coenzyme A synthet 100.0 3.5E-72 1.2E-76 576.0 49.3 475 20-510 32-533 (570)
15 3fce_A D-alanine--poly(phospho 100.0 6.9E-73 2.4E-77 576.0 42.8 464 25-510 1-475 (512)
16 3ivr_A Putative long-chain-fat 100.0 2.1E-73 7.3E-78 579.3 38.6 464 24-510 5-472 (509)
17 3e7w_A D-alanine--poly(phospho 100.0 2.4E-72 8.1E-77 571.6 44.5 463 25-510 1-474 (511)
18 2v7b_A Benzoate-coenzyme A lig 100.0 2.5E-71 8.6E-76 566.8 50.4 468 26-510 25-503 (529)
19 3rg2_A Enterobactin synthase c 100.0 4.8E-72 1.7E-76 581.3 44.7 472 20-510 22-505 (617)
20 1amu_A GRSA, gramicidin synthe 100.0 6.3E-72 2.2E-76 573.3 44.6 463 15-510 29-500 (563)
21 4gr5_A Non-ribosomal peptide s 100.0 2.2E-73 7.5E-78 586.2 33.8 461 21-510 71-542 (570)
22 1ry2_A Acetyl-coenzyme A synth 100.0 7.5E-72 2.6E-76 582.2 45.1 480 25-510 82-608 (663)
23 3l8c_A D-alanine--poly(phospho 100.0 3.1E-71 1.1E-75 565.3 43.2 464 25-510 4-483 (521)
24 4dg8_A PA1221; ANL superfamily 100.0 2.2E-71 7.6E-76 573.8 37.8 455 19-510 21-484 (620)
25 3ipl_A 2-succinylbenzoate--COA 100.0 7.1E-71 2.4E-75 559.9 37.1 458 25-510 1-468 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 5.3E-71 1.8E-75 559.8 34.6 450 24-510 21-479 (505)
27 2vsq_A Surfactin synthetase su 100.0 4E-68 1.4E-72 593.5 42.7 468 15-510 455-931 (1304)
28 3kxw_A Saframycin MX1 syntheta 100.0 7.6E-69 2.6E-73 556.6 29.2 469 22-507 8-531 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 4.6E-67 1.6E-71 542.1 40.4 483 9-510 6-532 (576)
30 3ite_A SIDN siderophore synthe 100.0 1.6E-67 5.4E-72 542.7 32.1 468 22-510 17-513 (562)
31 3t5a_A Long-chain-fatty-acid-- 100.0 6.3E-61 2.2E-65 485.0 28.2 394 24-436 23-480 (480)
32 3qov_A Phenylacetate-coenzyme 100.0 6.9E-47 2.4E-51 376.7 21.4 308 178-508 81-404 (436)
33 4gs5_A Acyl-COA synthetase (AM 100.0 7.5E-46 2.6E-50 357.6 19.8 286 181-510 36-325 (358)
34 2y27_A Phenylacetate-coenzyme 100.0 6.9E-46 2.4E-50 369.6 18.7 308 178-509 86-407 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 1.4E-45 4.8E-50 368.0 19.0 308 178-509 88-411 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.7E-32 9.2E-37 265.3 14.7 242 178-446 87-368 (369)
37 4eql_A 4-substituted benzoates 99.1 8.3E-10 2.8E-14 110.0 12.9 159 300-486 296-480 (581)
38 4b2g_A GH3-1 auxin conjugating 99.1 3.8E-10 1.3E-14 112.5 9.9 178 282-487 277-493 (609)
39 3lax_A Phenylacetate-coenzyme 99.0 4.9E-10 1.7E-14 87.1 7.2 72 435-506 1-75 (109)
40 3gxs_A Phenylacetate-coenzyme 99.0 1.3E-09 4.5E-14 84.5 7.5 71 435-506 1-75 (109)
41 4epl_A Jasmonic acid-amido syn 98.9 5.7E-09 2E-13 103.7 12.7 177 300-505 301-507 (581)
42 2y27_A Phenylacetate-coenzyme 94.3 0.39 1.3E-05 46.7 12.4 102 38-140 88-198 (437)
43 3qov_A Phenylacetate-coenzyme 93.8 0.37 1.3E-05 46.8 10.9 90 51-141 104-195 (436)
44 2y4o_A Phenylacetate-coenzyme 93.8 0.5 1.7E-05 46.0 11.9 102 38-140 90-200 (443)
45 3hgu_A EHPF; phenazine, antibi 86.5 2.5 8.6E-05 39.7 9.0 86 51-138 109-219 (369)
46 3ipl_A 2-succinylbenzoate--COA 85.9 7.4 0.00025 38.2 12.5 100 37-140 160-267 (501)
47 2d1s_A Luciferase, luciferin 4 84.0 5.2 0.00018 40.0 10.4 98 40-139 192-298 (548)
48 1mdb_A 2,3-dihydroxybenzoate-A 83.4 11 0.00039 37.3 12.6 99 38-140 180-288 (539)
49 3o83_A Peptide arylation enzym 82.9 10 0.00035 37.7 12.1 99 38-140 189-297 (544)
50 3g7s_A Long-chain-fatty-acid-- 82.1 5.7 0.00019 39.7 9.8 105 180-289 32-138 (549)
51 3ni2_A 4-coumarate:COA ligase; 81.8 3.9 0.00013 40.7 8.5 99 179-287 34-133 (536)
52 3r44_A Fatty acyl COA syntheta 80.7 11 0.00038 37.2 11.3 98 38-140 168-274 (517)
53 3ivr_A Putative long-chain-fat 79.9 4.6 0.00016 39.9 8.2 97 180-288 19-116 (509)
54 3t5a_A Long-chain-fatty-acid-- 78.1 6.3 0.00022 38.4 8.5 107 180-292 37-149 (480)
55 3rix_A Luciferase, luciferin 4 77.3 9.3 0.00032 38.1 9.6 101 39-140 189-297 (550)
56 1t5h_X 4-chlorobenzoyl COA lig 77.1 8 0.00027 38.0 8.9 100 180-289 15-117 (504)
57 3rg2_A Enterobactin synthase c 75.8 20 0.00067 36.3 11.6 99 38-140 182-290 (617)
58 3etc_A AMP-binding protein; ad 75.1 6.6 0.00023 39.5 7.8 97 180-283 69-166 (580)
59 1ry2_A Acetyl-coenzyme A synth 74.9 10 0.00035 38.9 9.3 99 180-283 95-194 (663)
60 1v25_A Long-chain-fatty-acid-C 74.8 6.7 0.00023 39.1 7.7 102 180-289 31-133 (541)
61 3kxw_A Saframycin MX1 syntheta 74.8 9.7 0.00033 38.3 9.0 100 37-139 164-275 (590)
62 1amu_A GRSA, gramicidin synthe 74.0 10 0.00035 38.0 8.8 97 180-288 52-149 (563)
63 3fce_A D-alanine--poly(phospho 74.0 8.8 0.0003 37.9 8.3 98 38-138 142-249 (512)
64 3c5e_A Acyl-coenzyme A synthet 73.1 19 0.00064 36.1 10.6 99 38-139 204-312 (570)
65 2v7b_A Benzoate-coenzyme A lig 72.9 7 0.00024 38.8 7.3 96 180-287 36-132 (529)
66 3e7w_A D-alanine--poly(phospho 72.8 14 0.00048 36.3 9.5 98 38-138 141-248 (511)
67 2cvi_A 75AA long hypothetical 72.1 12 0.00041 26.1 6.4 49 450-508 15-63 (83)
68 1pg4_A Acetyl-COA synthetase; 71.3 11 0.00038 38.5 8.5 98 180-283 89-187 (652)
69 4gs5_A Acyl-COA synthetase (AM 70.7 13 0.00044 34.7 8.1 94 39-138 36-137 (358)
70 4gr5_A Non-ribosomal peptide s 69.9 13 0.00044 37.3 8.5 93 180-284 88-181 (570)
71 4fuq_A Malonyl COA synthetase; 67.9 10 0.00036 37.2 7.2 81 201-284 28-109 (503)
72 3tsy_A Fusion protein 4-coumar 66.6 13 0.00043 40.3 8.1 97 179-285 73-170 (979)
73 2zbc_A 83AA long hypothetical 66.2 18 0.00062 24.9 6.4 48 450-507 15-62 (83)
74 3tbh_A O-acetyl serine sulfhyd 66.1 23 0.00077 32.6 8.6 65 69-133 62-127 (334)
75 3nyq_A Malonyl-COA ligase; A/B 65.8 38 0.0013 33.2 10.8 99 37-140 152-259 (505)
76 4dg8_A PA1221; ANL superfamily 63.3 32 0.0011 34.8 10.0 113 38-154 162-285 (620)
77 3ezx_A MMCP 1, monomethylamine 59.6 80 0.0027 26.7 10.9 93 227-321 93-195 (215)
78 3vc3_A Beta-cyanoalnine syntha 59.3 28 0.00097 32.1 8.0 92 41-133 51-142 (344)
79 3l8c_A D-alanine--poly(phospho 56.1 14 0.00048 36.4 5.7 80 201-283 29-109 (521)
80 3gqw_A Fatty acid AMP ligase; 55.1 21 0.00071 35.6 6.9 86 200-288 48-141 (576)
81 2djw_A Probable transcriptiona 50.3 24 0.00081 25.1 4.7 47 450-506 15-61 (92)
82 3ite_A SIDN siderophore synthe 44.7 56 0.0019 32.4 8.1 86 51-136 193-284 (562)
83 2q3b_A Cysteine synthase A; py 44.5 98 0.0034 27.9 9.0 64 69-133 58-122 (313)
84 1z7w_A Cysteine synthase; tran 44.3 87 0.003 28.4 8.7 64 70-133 58-122 (322)
85 4aec_A Cysteine synthase, mito 43.6 86 0.0029 29.9 8.6 63 70-132 166-229 (430)
86 1ve1_A O-acetylserine sulfhydr 41.5 1.8E+02 0.0062 25.9 10.3 63 70-133 52-117 (304)
87 2egu_A Cysteine synthase; O-ac 41.1 1E+02 0.0035 27.6 8.6 63 70-133 57-120 (308)
88 4eez_A Alcohol dehydrogenase 1 40.5 1.7E+02 0.0057 26.6 10.2 79 51-132 135-216 (348)
89 3l6b_A Serine racemase; pyrido 36.9 67 0.0023 29.6 6.7 58 77-135 76-133 (346)
90 2pqm_A Cysteine synthase; OASS 36.6 1.2E+02 0.0042 27.7 8.4 59 74-133 75-133 (343)
91 2vsq_A Surfactin synthetase su 36.1 79 0.0027 35.3 8.2 113 38-154 605-729 (1304)
92 2v03_A Cysteine synthase B; py 35.4 1.7E+02 0.006 26.0 9.1 61 71-132 54-115 (303)
93 3dzz_A Putative pyridoxal 5'-p 35.0 2.1E+02 0.0072 26.1 10.1 54 74-130 106-166 (391)
94 3dwg_A Cysteine synthase B; su 34.1 1.4E+02 0.0049 27.0 8.4 63 70-133 65-128 (325)
95 3ju7_A Putative PLP-dependent 33.2 97 0.0033 28.8 7.3 79 68-150 69-159 (377)
96 1y7l_A O-acetylserine sulfhydr 32.4 2.5E+02 0.0087 25.1 9.8 91 40-133 26-117 (316)
97 2jtq_A Phage shock protein E; 31.9 97 0.0033 21.1 5.4 45 51-102 22-66 (85)
98 1o58_A O-acetylserine sulfhydr 31.7 2.6E+02 0.0089 24.9 9.6 51 83-133 70-120 (303)
99 3fpc_A NADP-dependent alcohol 31.6 1.4E+02 0.0047 27.3 8.0 77 51-131 138-218 (352)
100 1pq4_A Periplasmic binding pro 31.3 77 0.0026 28.3 5.9 74 79-154 191-268 (291)
101 3pc3_A CG1753, isoform A; CBS, 31.0 1.4E+02 0.0047 29.4 8.2 58 74-132 110-167 (527)
102 3jv7_A ADH-A; dehydrogenase, n 30.8 2.1E+02 0.0073 25.9 9.1 78 53-133 143-225 (345)
103 3gi1_A LBP, laminin-binding pr 30.7 95 0.0032 27.6 6.4 74 77-153 179-258 (286)
104 4h27_A L-serine dehydratase/L- 29.7 88 0.003 29.0 6.2 60 77-136 92-151 (364)
105 3b8x_A WBDK, pyridoxamine 5-ph 29.4 3.3E+02 0.011 24.9 10.8 77 73-154 76-162 (390)
106 4h1h_A LMO1638 protein; MCCF-l 29.3 1.6E+02 0.0055 26.8 7.8 16 72-87 7-22 (327)
107 3ri6_A O-acetylhomoserine sulf 28.9 3.5E+02 0.012 25.6 10.5 72 81-153 100-174 (430)
108 3sr3_A Microcin immunity prote 28.9 1.6E+02 0.0056 26.8 7.8 17 72-88 8-24 (336)
109 2cg4_A Regulatory protein ASNC 28.5 1.5E+02 0.0051 23.1 6.7 48 450-507 82-129 (152)
110 1o69_A Aminotransferase; struc 28.2 3.5E+02 0.012 24.8 11.2 82 69-154 64-156 (394)
111 3hh8_A Metal ABC transporter s 28.0 1.7E+02 0.0058 26.1 7.6 92 57-150 160-259 (294)
112 2o1e_A YCDH; alpha-beta protei 27.7 1E+02 0.0035 27.9 6.1 75 79-153 191-269 (312)
113 2zzt_A Putative uncharacterize 27.4 1.5E+02 0.005 21.6 5.9 57 450-506 12-73 (107)
114 3ijw_A Aminoglycoside N3-acety 27.3 39 0.0013 29.8 3.0 24 63-86 18-41 (268)
115 1zsy_A Mitochondrial 2-enoyl t 27.1 1.5E+02 0.0053 27.1 7.5 80 51-131 138-223 (357)
116 1h2b_A Alcohol dehydrogenase; 27.0 1.5E+02 0.0053 27.1 7.4 63 67-132 175-239 (359)
117 1kmj_A Selenocysteine lyase; p 26.6 3.7E+02 0.013 24.5 10.3 12 448-459 386-397 (406)
118 2rkb_A Serine dehydratase-like 26.3 1.2E+02 0.0039 27.5 6.3 58 77-135 54-111 (318)
119 3tla_A MCCF; serine protease, 25.9 1.8E+02 0.006 27.1 7.4 17 72-88 38-54 (371)
120 3s2e_A Zinc-containing alcohol 25.6 2E+02 0.007 26.0 8.0 78 51-132 138-218 (340)
121 3sma_A FRBF; N-acetyl transfer 25.3 44 0.0015 29.7 3.0 30 50-86 19-48 (286)
122 2nyg_A YOKD protein; PFAM02522 25.1 44 0.0015 29.6 3.0 23 64-86 17-39 (273)
123 3hvy_A Cystathionine beta-lyas 24.8 3.6E+02 0.012 25.5 9.7 59 74-132 113-184 (427)
124 4e5s_A MCCFLIKE protein (BA_56 24.8 1.9E+02 0.0067 26.3 7.4 16 73-88 8-23 (331)
125 2prs_A High-affinity zinc upta 24.8 1.2E+02 0.0042 26.8 6.0 73 79-153 175-253 (284)
126 3two_A Mannitol dehydrogenase; 24.5 1.8E+02 0.0062 26.5 7.4 75 51-129 148-225 (348)
127 3ss7_X D-serine dehydratase; t 24.5 1.6E+02 0.0054 28.2 7.1 59 80-138 162-220 (442)
128 1eg5_A Aminotransferase; PLP-d 24.3 3.7E+02 0.013 24.2 9.8 14 447-460 356-369 (384)
129 3tqh_A Quinone oxidoreductase; 23.8 2.1E+02 0.007 25.7 7.5 76 51-131 124-203 (321)
130 1p5j_A L-serine dehydratase; l 23.6 1.3E+02 0.0045 27.9 6.2 55 80-134 95-149 (372)
131 1t3i_A Probable cysteine desul 23.5 4.3E+02 0.015 24.2 11.3 31 101-131 118-150 (420)
132 3aey_A Threonine synthase; PLP 22.9 1.3E+02 0.0046 27.5 6.1 56 80-135 79-135 (351)
133 3isl_A Purine catabolism prote 22.7 4.5E+02 0.015 24.1 10.5 32 100-131 85-116 (416)
134 3i16_A Aluminum resistance pro 22.6 3.3E+02 0.011 25.7 8.9 59 74-132 112-184 (427)
135 1wxi_A NH(3)-dependent NAD(+) 22.4 4E+02 0.014 23.4 9.2 46 52-100 16-63 (275)
136 2cf5_A Atccad5, CAD, cinnamyl 22.0 1.5E+02 0.0053 27.1 6.4 79 51-132 151-233 (357)
137 4a2c_A Galactitol-1-phosphate 21.5 2.8E+02 0.0097 25.0 8.1 64 67-133 151-214 (346)
138 3cai_A Possible aminotransfera 21.4 4.7E+02 0.016 23.9 10.1 32 100-131 112-145 (406)
139 1elu_A L-cysteine/L-cystine C- 21.4 3.3E+02 0.011 24.7 8.7 48 84-131 82-133 (390)
140 2ayi_A Aminopeptidase T; metal 21.2 1.8E+02 0.006 27.5 6.5 51 58-108 4-58 (408)
141 1gu7_A Enoyl-[acyl-carrier-pro 21.1 4.6E+02 0.016 23.8 9.5 80 52-132 138-224 (364)
142 2dbb_A Putative HTH-type trans 21.0 1.7E+02 0.0059 22.6 5.6 46 451-506 83-129 (151)
143 3ist_A Glutamate racemase; str 20.7 2.2E+02 0.0076 24.9 6.7 60 25-91 18-81 (269)
144 2e18_A NH(3)-dependent NAD(+) 20.7 1.8E+02 0.0063 25.1 6.3 39 60-101 8-46 (257)
145 1kol_A Formaldehyde dehydrogen 20.6 4E+02 0.014 24.6 9.1 55 69-127 178-233 (398)
146 4dq6_A Putative pyridoxal phos 20.6 4.8E+02 0.016 23.6 10.7 11 449-459 375-385 (391)
147 2zsj_A Threonine synthase; PLP 20.3 1.5E+02 0.0051 27.2 5.8 56 80-135 81-137 (352)
148 2d1f_A Threonine synthase; ami 20.2 1.7E+02 0.0057 27.0 6.2 55 80-134 87-142 (360)
149 3isl_A Purine catabolism prote 20.1 4.5E+02 0.015 24.1 9.4 74 74-148 83-168 (416)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.2e-82 Score=650.63 Aligned_cols=503 Identities=74% Similarity=1.202 Sum_probs=458.6
Q ss_pred ccceEEEcCCCCCCCCCCCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC
Q 010425 7 HQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQN 86 (511)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~ 86 (511)
+.+.++.++.++.+.|..+|+.++|.++++++|+++|+++.+.++++||+||+++++++|++|++.|+++||+|+++++|
T Consensus 4 ~~~~i~~~~~~~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 83 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS 83 (536)
T ss_dssp -CCCCBCCSSCCCCCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred ccceEEecCCCCCCCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 45678999999999998899999999999999999999987667999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHH
Q 010425 87 CPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELI 166 (511)
Q Consensus 87 ~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 166 (511)
++++++++|||+++|++++|++|.++.+++.++++.++++++|++....+.+.+.......+++.++........++++.
T Consensus 84 ~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (536)
T 3ni2_A 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELT 163 (536)
T ss_dssp SHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHH
T ss_pred cHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHh
Confidence 99999999999999999999999999999999999999999999998888887776666777777776555666676663
Q ss_pred hhccCCCCCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHH
Q 010425 167 TQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVL 246 (511)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~ 246 (511)
.. .....+....+++++++++|||||||.||+|.++|+++.+.+..........+++.+++++++.+|++|.+++...+
T Consensus 164 ~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 242 (536)
T 3ni2_A 164 QA-DENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIM 242 (536)
T ss_dssp TS-CGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTH
T ss_pred hc-cccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHH
Confidence 32 22233445678899999999999999999999999999988877666555456788999999999999999997778
Q ss_pred HHHHHhCcEEEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCC
Q 010425 247 LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLP 326 (511)
Q Consensus 247 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~ 326 (511)
+.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++........++++|.+++|||++++++.+++++.||
T Consensus 243 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 322 (536)
T 3ni2_A 243 LCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFP 322 (536)
T ss_dssp HHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCT
T ss_pred HHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCC
Confidence 89999999999999999999999999999999999999999999987777778899999999999999999999999999
Q ss_pred CCceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhh
Q 010425 327 HAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREA 406 (511)
Q Consensus 327 ~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~ 406 (511)
++++++.||+||++.+++.+............+++|+|+++++++|+|++++.+++.|+.|||+++|++++.||+++++.
T Consensus 323 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~ 402 (536)
T 3ni2_A 323 QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEA 402 (536)
T ss_dssp TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHH
T ss_pred CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhH
Confidence 99999999999999877766444444455677899999999999999998999999999999999999999999999999
Q ss_pred hhhhcCCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEe
Q 010425 407 TETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVR 486 (511)
Q Consensus 407 ~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 486 (511)
+...|+.++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+.
T Consensus 403 t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~ 482 (536)
T 3ni2_A 403 TSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482 (536)
T ss_dssp HHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred HHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEe
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhcccCCCC
Q 010425 487 SNGSKITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 487 ~~~~~~~~~~l~~~l~~~l~~~~~ 510 (511)
.++...+.++|+++++++||+||+
T Consensus 483 ~~~~~~~~~~l~~~l~~~l~~~~~ 506 (536)
T 3ni2_A 483 SEKSQATEDEIKQYISKQVIFYKR 506 (536)
T ss_dssp CTTCCCCHHHHHHHHHTTSCGGGC
T ss_pred cCCCCCCHHHHHHHHHHhccCCcc
Confidence 988888999999999999999986
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=6.9e-77 Score=609.02 Aligned_cols=496 Identities=33% Similarity=0.519 Sum_probs=430.1
Q ss_pred ccceEEEcCCCCCCCCCCCCHhh-HHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcC
Q 010425 7 HQEFIFRSKLPDIYIPNHLPLHT-YCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQ 85 (511)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~t~~~-~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~ 85 (511)
..+-++.+..++...|...|+.+ +|.++++++ +++|+++...++++||+||.++++++|++|++.|+++||+|+++++
T Consensus 7 ~~~~~~~~~~~~~~~p~~~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (548)
T 2d1s_A 7 DENIVVGPKPFYPIEEGSAGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSE 85 (548)
T ss_dssp CTTSEECCCCSSCCCSSCHHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred CcceEecCCCCCCCCCCcCcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Confidence 33446777777777887789999 899999999 9999998545789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhc--CCeEEEeCCCC--CCccc
Q 010425 86 NCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH--GARIVTIDPPP--ENCLH 161 (511)
Q Consensus 86 ~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~~~~ 161 (511)
|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+....... ...++.++... .+...
T Consensus 86 n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (548)
T 2d1s_A 86 NCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165 (548)
T ss_dssp SCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCB
T ss_pred CchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccccccccc
Confidence 999999999999999999999999999999999999999999999988777666554433 24455554321 12335
Q ss_pred hHHHHhhccCCCCCCcCCC-----C-CCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecc
Q 010425 162 FSELITQADENEIPAVKIN-----P-DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLP 235 (511)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-----~-~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p 235 (511)
++++.........+..... + +++++++|||||||.||+|.++|+++.+.+........ .+++.+++++++.+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p 244 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY-GNQVSPGTAVLTVVP 244 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECSC
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh-ccCCCccceEEEecc
Confidence 6666443222112212222 4 89999999999999999999999999888776655321 246788999999999
Q ss_pred hhhHHHhHHHHHHHHHhCcEEEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCH
Q 010425 236 LFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGK 315 (511)
Q Consensus 236 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~ 315 (511)
++|.+|+...++.++ .|+++++.+.+++..+++.|+++++|+++++|+++..|.+........++++|.+++||+++++
T Consensus 245 ~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 323 (548)
T 2d1s_A 245 FHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323 (548)
T ss_dssp TTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCH
Confidence 999999866677777 9999999998999999999999999999999999999998766555678899999999999999
Q ss_pred HHHHHHHHHCCCCceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEeccc
Q 010425 316 ELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQ 395 (511)
Q Consensus 316 ~~~~~~~~~~~~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~ 395 (511)
++.+++.+.|+++++++.||+||++..++.+ .......+++|+|+++++++|+|++++++++.|+.|||+++|++
T Consensus 324 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~-----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~ 398 (548)
T 2d1s_A 324 EVGEAVARRFNLPGVRQGYGLTETTSAIIIT-----PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398 (548)
T ss_dssp HHHHHHHHHTTCSCCEEEEECGGGSSEEEEC-----CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTT
T ss_pred HHHHHHHHHcCCCceeeccccccccceeeec-----CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHH
Confidence 9999999999888999999999998766542 11234567899999999999999889999999999999999999
Q ss_pred chhhccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCC
Q 010425 396 IMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEA 475 (511)
Q Consensus 396 ~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~ 475 (511)
++.||+++++.+...|++++||+|||+|++++||.++++||++|+||++|++|+|.+||++|.++|+|.+++|++.+++.
T Consensus 399 v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~ 478 (548)
T 2d1s_A 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPV 478 (548)
T ss_dssp SCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred HhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 010425 476 AGEVPVAFVVRSNGSKITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 476 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~ 510 (511)
.++.++++|++.++...+.++|+++++++|++||+
T Consensus 479 ~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~ 513 (548)
T 2d1s_A 479 AGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKR 513 (548)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGS
T ss_pred CCeeeEEEEEEcCCCCCCHHHHHHHHHHhcccccc
Confidence 89999999999887778899999999999999986
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.6e-77 Score=611.36 Aligned_cols=495 Identities=34% Similarity=0.528 Sum_probs=356.6
Q ss_pred cceEEEcCCCCCCCCCCCCHhhHHhhhcccCCCCcEEE---eCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 010425 8 QEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCII---NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLL 84 (511)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~---~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~ 84 (511)
.++++.+..+..+.+. .|+.++|.++++++|+++|++ +...++++||+||+++++++|++|++.|+++||+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~-~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 82 (550)
T 3rix_A 4 AKNIKKGPAPFYPLED-GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCS 82 (550)
T ss_dssp GGGSEECCCCSSCCCC-SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred ccceeeCCCCCCCccc-CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEc
Confidence 3557788888888888 999999999999999999976 554578999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcC--CeEEEeCCC--CCCcc
Q 010425 85 QNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHG--ARIVTIDPP--PENCL 160 (511)
Q Consensus 85 ~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~ 160 (511)
+|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+........ ..++.++.. .....
T Consensus 83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (550)
T 3rix_A 83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ 162 (550)
T ss_dssp SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBC
T ss_pred CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcc
Confidence 99999999999999999999999999999999999999999999999988877776655542 344444432 23445
Q ss_pred chHHHHhhccCCC------CCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEec
Q 010425 161 HFSELITQADENE------IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVL 234 (511)
Q Consensus 161 ~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (511)
++.++........ .+.....++++++++|||||||.||+|.++|+++...+........ .+++.+++++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 241 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF-GNQIIPDTAILSVV 241 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECS
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc-cccCCCCcEEEEec
Confidence 5666544332211 1222234578999999999999999999999999887766654322 24578899999999
Q ss_pred chhhHHHhHHHHHHHHHhCcEEEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCC
Q 010425 235 PLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMG 314 (511)
Q Consensus 235 p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~ 314 (511)
|++|.+|+ ...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..+++........++++|.+++|||+++
T Consensus 242 p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 320 (550)
T 3rix_A 242 PFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLS 320 (550)
T ss_dssp CTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCC
T ss_pred hHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCC
Confidence 99999998 56778899999999999999999999999999999999999999999987766777899999999999999
Q ss_pred HHHHHHHHHHCCCCceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecc
Q 010425 315 KELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGA 394 (511)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~ 394 (511)
+++.+++.+.|+...+++.||+||++..++.+ .......+++|+|+++++++|+|++++++++.|+.|||+++|+
T Consensus 321 ~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~ 395 (550)
T 3rix_A 321 KEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-----PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395 (550)
T ss_dssp HHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC-----CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEEST
T ss_pred HHHHHHHHHHcCCCccccccCcCccccceecC-----CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCC
Confidence 99999999999545699999999999766654 1223466899999999999999988999999999999999999
Q ss_pred cchhhccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCC
Q 010425 395 QIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDE 474 (511)
Q Consensus 395 ~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~ 474 (511)
+++.||+++++.+...|+.++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 396 ~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 475 (550)
T 3rix_A 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDD 475 (550)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------------------------------------
T ss_pred CcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecC
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 010425 475 AAGEVPVAFVVRSNGSKITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 475 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~ 510 (511)
..++.++++|++.++...+.++++++++++|++|+.
T Consensus 476 ~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~ 511 (550)
T 3rix_A 476 DAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK 511 (550)
T ss_dssp ------------------------------------
T ss_pred CCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccc
Confidence 999999999999888788889999999999999864
No 4
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.7e-77 Score=650.03 Aligned_cols=504 Identities=73% Similarity=1.175 Sum_probs=381.5
Q ss_pred ccceEEEcCCCCCCCCCCCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC
Q 010425 7 HQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQN 86 (511)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~ 86 (511)
..+.+|.+..++.++|...|+.++|.++++++|+++|+++.+.++++||+||+++++++|++|+++|+++||+|+|+++|
T Consensus 43 ~~~~~~~~~~~~~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n 122 (979)
T 3tsy_A 43 NSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPN 122 (979)
T ss_dssp --CCCBCCSSCCCCCCTTSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSS
T ss_pred CCCceeecCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCC
Confidence 44567888889999999899999999999999999999988777999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCC-----CCCccc
Q 010425 87 CPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPP-----PENCLH 161 (511)
Q Consensus 87 ~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~ 161 (511)
++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+..........++.++.. ......
T Consensus 123 s~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (979)
T 3tsy_A 123 CPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR 202 (979)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEE
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCccccc
Confidence 999999999999999999999999999999999999999999999887776666555545666666542 122334
Q ss_pred hHHHHhhccC--CCCCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhH
Q 010425 162 FSELITQADE--NEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHI 239 (511)
Q Consensus 162 ~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (511)
+.++...... ...+.....++++++++|||||||.||+|.++|+++.+.+..........+++.+++++++.+|++|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 282 (979)
T 3tsy_A 203 FTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282 (979)
T ss_dssp GGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSH
T ss_pred HHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHH
Confidence 4444221111 12234457889999999999999999999999999998887776655556678899999999999999
Q ss_pred HHhHHHHHHHHHhCcEEEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHH
Q 010425 240 YSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELED 319 (511)
Q Consensus 240 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~ 319 (511)
+++...++.++..|+++++.+++++..+++.|+++++|++.++|+++..+++........++++|.+++||+++++++.+
T Consensus 283 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~ 362 (979)
T 3tsy_A 283 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELED 362 (979)
T ss_dssp HHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHH
T ss_pred HHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHH
Confidence 99977788999999999999999999999999999999999999999999988776677789999999999999999999
Q ss_pred HHHHHCCCCceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhh
Q 010425 320 AVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399 (511)
Q Consensus 320 ~~~~~~~~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~g 399 (511)
++.+.||++++++.||+||++.+++.+............+++|+|+++++++|+|++++++++.|+.|||+++|+++++|
T Consensus 363 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~G 442 (979)
T 3tsy_A 363 AVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG 442 (979)
T ss_dssp HHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSE
T ss_pred HHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCcccc
Confidence 99999999999999999999987766544344445567789999999999999999899999999999999999999999
Q ss_pred ccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCce
Q 010425 400 YLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEV 479 (511)
Q Consensus 400 y~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~ 479 (511)
|+++++.+...|..++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.
T Consensus 443 Y~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~ 522 (979)
T 3tsy_A 443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEV 522 (979)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------------
T ss_pred ccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 010425 480 PVAFVVRSNGSKITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 480 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~ 510 (511)
++++|+..++...+.++++++++++||.||+
T Consensus 523 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~ 553 (979)
T 3tsy_A 523 PVAFVVKSKDSELSEDDVKQFVSKQVVFYKR 553 (979)
T ss_dssp -------------------------------
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhcccccC
Confidence 9999998888778889999999999999986
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.6e-76 Score=605.61 Aligned_cols=484 Identities=29% Similarity=0.512 Sum_probs=401.2
Q ss_pred EcCCCCCCCCCCCCHhhHHhhhcccCCCCcEEEeCCCC------CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC
Q 010425 13 RSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTG------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQN 86 (511)
Q Consensus 13 ~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~ 86 (511)
...+|..+.|. .|+.++|.++++++|+++|+++.+.+ +++||+||+++++++|++|++.|+++||+|+++++|
T Consensus 8 ~~~~p~~~~~~-~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 86 (549)
T 3g7s_A 8 KIGFPSLYYPK-ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPN 86 (549)
T ss_dssp CCCCCCCCCCC-CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred ccCCCCCCcCC-CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 44566777777 89999999999999999999977421 899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCe-EEEeCCCCCCccchHHH
Q 010425 87 CPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGAR-IVTIDPPPENCLHFSEL 165 (511)
Q Consensus 87 ~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~ 165 (511)
++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+.......... ++..+. ....+.++
T Consensus 87 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 163 (549)
T 3g7s_A 87 SIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG---EVNSLSEV 163 (549)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC---SSSCHHHH
T ss_pred CHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC---CCcCHHHH
Confidence 99999999999999999999999999999999999999999999998887777766555443 334432 33456666
Q ss_pred HhhccCCCCCCcCCCC-CCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHH
Q 010425 166 ITQADENEIPAVKINP-DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS 244 (511)
Q Consensus 166 ~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 244 (511)
....... .+.....+ +++++++|||||||.||+|.++|.++.+.+..... .+++.+++++++.+|++|.+++..
T Consensus 164 ~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~~~~~ 238 (549)
T 3g7s_A 164 MDSGSED-FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAV----ATGLSHMDTIVGCMPMFHSAEFGL 238 (549)
T ss_dssp HHHSCSC-CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHH----HHCCCTTCEEECCSCTTSHHHHHH
T ss_pred HhcCccc-cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHH----HcCCCCCCEEEEeCcHHHHHHHHH
Confidence 4433222 22333344 89999999999999999999999999988877665 345889999999999999999844
Q ss_pred HHHHHHHhCcEEEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCC--CCCCcceeeeeeccCCCHHHHHHHH
Q 010425 245 VLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDK--YDMSSIRTVMSGAAPMGKELEDAVR 322 (511)
Q Consensus 245 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~l~~i~~~Ge~l~~~~~~~~~ 322 (511)
++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++...... ..++++|.+++||+++++++.+++.
T Consensus 239 -~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~ 317 (549)
T 3g7s_A 239 -VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLL 317 (549)
T ss_dssp -HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred -HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHH
Confidence 7889999999999999999999999999999999999999999987654333 5678999999999999999999999
Q ss_pred HH----CC--CCceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccc
Q 010425 323 AK----LP--HAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQI 396 (511)
Q Consensus 323 ~~----~~--~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~ 396 (511)
+. ++ ++++++.||+||++.+++.+.. .......++|+|+++++++|+|++++++++.|+.|||+++|+++
T Consensus 318 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v 393 (549)
T 3g7s_A 318 KLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP----LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNI 393 (549)
T ss_dssp HHHHHHSSCTTCEEEEEEECGGGSSEEEECCG----GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTS
T ss_pred HHHHhhcCCccccccceEeccccchhhhcCCc----cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcch
Confidence 87 62 3899999999999977665321 12245678999999999999999999999999999999999999
Q ss_pred hhhccCChhhhhhhcC--CCC--ceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeee
Q 010425 397 MKGYLNDREATETTID--KEG--WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMK 472 (511)
Q Consensus 397 ~~gy~~~~~~~~~~~~--~~~--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~ 472 (511)
+.||+++++.+...|. .+| ||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 394 ~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 473 (549)
T 3g7s_A 394 FKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKP 473 (549)
T ss_dssp CSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCC
T ss_pred hhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeE
Confidence 9999999999998873 566 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEeCCC--CCCCHHHHHHHHHhcccCCCC
Q 010425 473 DEAAGEVPVAFVVRSNG--SKITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 473 ~~~~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~ 510 (511)
++..++.++++|++.++ ...+.++|+++|+++||+||+
T Consensus 474 ~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~ 513 (549)
T 3g7s_A 474 DEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKR 513 (549)
T ss_dssp C------CEEEEEECSTTTTSCCHHHHHHHHHTTCC----
T ss_pred ccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCccc
Confidence 99899999999999877 678899999999999999986
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=7.4e-76 Score=595.46 Aligned_cols=467 Identities=26% Similarity=0.409 Sum_probs=411.2
Q ss_pred hHHhhhcccCCCCcEEEeC-CCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEecc
Q 010425 29 TYCFENISQFADRPCIING-PTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTA 107 (511)
Q Consensus 29 ~~l~~~~~~~p~~~a~~~~-~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~ 107 (511)
++|.+.++++|+++++... ..++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 5788999999999999731 236899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHhhccCCCCCCcCCCCCCEEEE
Q 010425 108 NPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVAL 187 (511)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 187 (511)
+|.++.+++.+++++++++++|++......+..........+..++..... .+.+. ........+.....+++++++
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~d~a~i 160 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG--SLTDA-AAGASEAFATIDRGADDLAAI 160 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCS--HHHHH-HHTSCSCCCCCCCCTTSEEEE
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCccc--ccchh-hhcCCCCcCcCCCCCCCeEEE
Confidence 999999999999999999999999877666555554444555555432221 22222 122222333445678999999
Q ss_pred ecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEccCCCHHHH
Q 010425 188 PYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKL 267 (511)
Q Consensus 188 ~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~ 267 (511)
+|||||||.||+|.++|+++.+.+..... .+++.+++++++.+|++|.+|+....+.+++.|+++++.+.++++.+
T Consensus 161 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 236 (503)
T 4fuq_A 161 LYTSGTTGRSKGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKI 236 (503)
T ss_dssp EECC--CCSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHH
T ss_pred EECCCcccCCeEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHH
Confidence 99999999999999999999988877766 34588999999999999999986677889999999999999999999
Q ss_pred HHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccccCCCccccccc
Q 010425 268 MELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCL 347 (511)
Q Consensus 268 ~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~tE~~~~~~~~~ 347 (511)
++.++ ++|+++++|+++..+++........++++|.+++||+++++++.++|.+.+ ++++++.||+||++..+..
T Consensus 237 ~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~-- 311 (503)
T 4fuq_A 237 LDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN-- 311 (503)
T ss_dssp HHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--
T ss_pred HHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--
Confidence 99998 899999999999999998877777788999999999999999999999998 7899999999999865432
Q ss_pred cccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCCCceecCceEEEcC
Q 010425 348 AFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDD 427 (511)
Q Consensus 348 ~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~ 427 (511)
........+++|+|+++++++|+|++++++++.|+.|||+++|++++.||+++++.+...|..++||+|||+|++++
T Consensus 312 ---~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~ 388 (503)
T 4fuq_A 312 ---PYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE 388 (503)
T ss_dssp ---CSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT
T ss_pred ---CCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC
Confidence 12234456789999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcccC
Q 010425 428 DDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVIF 507 (511)
Q Consensus 428 ~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~ 507 (511)
||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++++|++.++...+.++++++++++||+
T Consensus 389 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~ 468 (503)
T 4fuq_A 389 RGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAK 468 (503)
T ss_dssp TCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCG
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CCC
Q 010425 508 FSH 510 (511)
Q Consensus 508 ~~~ 510 (511)
||+
T Consensus 469 ~~~ 471 (503)
T 4fuq_A 469 FKM 471 (503)
T ss_dssp GGC
T ss_pred CCC
Confidence 986
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=5.6e-74 Score=590.09 Aligned_cols=477 Identities=22% Similarity=0.344 Sum_probs=410.6
Q ss_pred CCCCCCHh-hHHhhhcccCCCCcEEEeCC---CCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHH
Q 010425 21 IPNHLPLH-TYCFENISQFADRPCIINGP---TGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLG 96 (511)
Q Consensus 21 ~~~~~t~~-~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA 96 (511)
.|...|+. ++|.++++++|+++|+++.+ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA 130 (580)
T 3etc_A 51 VPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLG 130 (580)
T ss_dssp CCSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 44556666 99999999999999998532 247999999999999999999999999999999999999999999999
Q ss_pred HHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccch--HHHHHHhhhcC---CeEEEeCCC-CCCccchHHHHhhcc
Q 010425 97 ASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN--DKVRDLSEHHG---ARIVTIDPP-PENCLHFSELITQAD 170 (511)
Q Consensus 97 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~---~~~i~~~~~-~~~~~~~~~~~~~~~ 170 (511)
|+++|++++|++|.++.+++.++++.++++++|++.+.. ..+.+...... ...+.++.. ..+...+.+......
T Consensus 131 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (580)
T 3etc_A 131 LHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESS 210 (580)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSC
T ss_pred HHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCC
Confidence 999999999999999999999999999999999987755 55555544432 455555543 445566766644433
Q ss_pred CCCCCC---cCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHH
Q 010425 171 ENEIPA---VKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLL 247 (511)
Q Consensus 171 ~~~~~~---~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 247 (511)
.....+ ....++++++++|||||||.||+|.++|.++...+..... ++++.+++++++..|++|..+++..++
T Consensus 211 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (580)
T 3etc_A 211 PIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKY----WQNVEDDGLHYTVADSGWGKCVWGKLY 286 (580)
T ss_dssp SCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHT----TSCCCTTCEEEECCCTTSTHHHHHTTH
T ss_pred cccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHH----hhCCCCCceEEEeCChHHHHHHHHHHH
Confidence 322222 3567899999999999999999999999988776655443 345788999999999999888866788
Q ss_pred HHHHhCcEEEEc--cCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHC
Q 010425 248 CALRVGAAILIM--QKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKL 325 (511)
Q Consensus 248 ~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~ 325 (511)
.++..|+++++. ..+++..+++.|+++++|+++++|+++..|++. .....+++++|.+++|||++++++.++|.+.+
T Consensus 287 ~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 365 (580)
T 3etc_A 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT 365 (580)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHh
Confidence 899999999887 468999999999999999999999999999886 34455688999999999999999999999988
Q ss_pred CCCceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEec-----ccchhhc
Q 010425 326 PHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG-----AQIMKGY 400 (511)
Q Consensus 326 ~~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~-----~~~~~gy 400 (511)
++++++.||+||++..++.+ .......+++|+|+++++++|+| +++++++.|+.|||+++| ++++.||
T Consensus 366 -g~~i~~~YG~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY 438 (580)
T 3etc_A 366 -GIKLMEGFGQTETVVTIATF-----PWMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHY 438 (580)
T ss_dssp -SCCCEEEECCTTSSCCEECC-----TTSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEE
T ss_pred -CCeEecccccccccceeecC-----CCCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccc
Confidence 89999999999998655433 12244678999999999999999 579999999999999997 7899999
Q ss_pred cCChhhhhhhcCCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceE
Q 010425 401 LNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVP 480 (511)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~ 480 (511)
+++++.+...| .++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+
T Consensus 439 ~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~ 517 (580)
T 3etc_A 439 GKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517 (580)
T ss_dssp TTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEE
Confidence 99999999999 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCC---HHHHHHHHHhcccCCCC
Q 010425 481 VAFVVRSNGSKIT---EDEIKQYISKQVIFFSH 510 (511)
Q Consensus 481 ~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~ 510 (511)
.++|++.++.... .++|+++++++||+||+
T Consensus 518 ~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 550 (580)
T 3etc_A 518 KATIVLTKDYTPSDSLKNELQDHVKNVTAPYKY 550 (580)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHhhCCCccC
Confidence 9999998875443 46899999999999986
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.1e-74 Score=588.95 Aligned_cols=473 Identities=28% Similarity=0.438 Sum_probs=406.1
Q ss_pred CCCCCCCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHH
Q 010425 19 IYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGAS 98 (511)
Q Consensus 19 ~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~ 98 (511)
-..+++.|+.++|.++++++|+++|+++.+.++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+
T Consensus 10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 10 DDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp --CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 34566789999999999999999999987444599999999999999999999999999999999999999999999999
Q ss_pred hhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCC--eEEEeCCCCCCccchHHHHhhccCCCCCC
Q 010425 99 YIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGA--RIVTIDPPPENCLHFSELITQADENEIPA 176 (511)
Q Consensus 99 ~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (511)
++|++++|++|.++.+++.+++++++++++|++......+......... .++.+. ....+.+... ......+.
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~ 164 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI----GADSLAERLR-SAAADEPA 164 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE----EHHHHHHHHH-HCCCCCCC
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc----CcccHHHHhh-ccCcCCCC
Confidence 9999999999999999999999999999999998887776665443211 111111 0112333322 22233344
Q ss_pred cCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEE
Q 010425 177 VKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAI 256 (511)
Q Consensus 177 ~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 256 (511)
....++++++++|||||||.||+|.++|+++.+.+...... +++.+++++++.+|++|..++...++..+ .|+++
T Consensus 165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~ 239 (517)
T 3r44_A 165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST----IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTL 239 (517)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH----SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEE
T ss_pred CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh----cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEE
Confidence 56788999999999999999999999999999888776663 45889999999999999999855455555 99999
Q ss_pred EEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccc
Q 010425 257 LIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGM 336 (511)
Q Consensus 257 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~ 336 (511)
++.+.+++..+++.|+++++|++.++|+++..+.+........++++|.+++|||++++++.+++.+. ++++++.||+
T Consensus 240 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~ 317 (517)
T 3r44_A 240 ISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYAL 317 (517)
T ss_dssp EECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEEC
T ss_pred EEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecc
Confidence 99999999999999999999999999999999988765555667899999999999999999999886 8999999999
Q ss_pred cCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCCCc
Q 010425 337 TEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGW 416 (511)
Q Consensus 337 tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~ 416 (511)
||++..++... ........+++|+|.++++++++| +++.+++.| .|||+++|++++.||+++++.+...| .++|
T Consensus 318 TE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~ 391 (517)
T 3r44_A 318 TESCGGGTLLL---SEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGW 391 (517)
T ss_dssp GGGTTCEEEEC---GGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTE
T ss_pred cccccceeecC---CccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCC
Confidence 99987665542 122244667899999999999999 678888888 89999999999999999999999999 7899
Q ss_pred eecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q 010425 417 LHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDE 496 (511)
Q Consensus 417 ~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 496 (511)
|+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++| ..++...+.++
T Consensus 392 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~ 470 (517)
T 3r44_A 392 FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQ 470 (517)
T ss_dssp EEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHH
T ss_pred EecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889888888 55667788999
Q ss_pred HHHHHHhcccCCCC
Q 010425 497 IKQYISKQVIFFSH 510 (511)
Q Consensus 497 l~~~l~~~l~~~~~ 510 (511)
|+++++++||+||+
T Consensus 471 l~~~l~~~L~~~~~ 484 (517)
T 3r44_A 471 IVEYCGTRLARYKL 484 (517)
T ss_dssp HHHHHHHHSCGGGS
T ss_pred HHHHHHHhCCCCCC
Confidence 99999999999986
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.2e-74 Score=588.50 Aligned_cols=469 Identities=25% Similarity=0.404 Sum_probs=401.6
Q ss_pred CCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCe
Q 010425 24 HLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103 (511)
Q Consensus 24 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 103 (511)
..|+.++|.++++++|+++|+++. ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 379999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCceEEEEcccch-----HHHHHHhhhc-CCe-EEEeCCCCCCccchHHHHhhccCCCCCC
Q 010425 104 STTANPFYTPPEIAKQAIASKAKIIITQAVYN-----DKVRDLSEHH-GAR-IVTIDPPPENCLHFSELITQADENEIPA 176 (511)
Q Consensus 104 ~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (511)
++|++|.++.+++.++++.++++++|+++... .......... ..+ ++..+.. . .+.++ ........+.
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~~~~~~~ 176 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-E---EFLPL-EDLHTEPVKL 176 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-T---TSEEG-GGCCCCCCCC
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc-c---chhhh-hhcccccccc
Confidence 99999999999999999999999999987532 2222332222 222 3333321 1 12222 1111111123
Q ss_pred cCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHH-HHHHHHHhCcE
Q 010425 177 VKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS-VLLCALRVGAA 255 (511)
Q Consensus 177 ~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~ 255 (511)
...+++++++++|||||||.||+|.++|+++.+.+..... .+++.+++++++.+|++|.+++.. .++.++..|++
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~ 252 (539)
T 1mdb_A 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGR 252 (539)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCE
T ss_pred CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCE
Confidence 4567899999999999999999999999999888776655 345789999999999999999854 68899999999
Q ss_pred EEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceecccc
Q 010425 256 ILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYG 335 (511)
Q Consensus 256 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg 335 (511)
+++.+.+++..+++.|+++++|+++++|+++..+++........++++|.+++|||++++++.+++.+.+ ++++++.||
T Consensus 253 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG 331 (539)
T 1mdb_A 253 VVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFG 331 (539)
T ss_dssp EEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEc
Confidence 9999999999999999999999999999999999876554556688999999999999999999999999 899999999
Q ss_pred ccCCCccccccccccCCCcccCCCcceeccCC-ceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCC
Q 010425 336 MTEAGPVLSMCLAFAKEPFEIKSGACGTVVRN-AEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE 414 (511)
Q Consensus 336 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~-~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~ 414 (511)
+||++..+.. .........+++|+|+++ .+++|+| +++++++.|+.|||+++|++++.||+++++.+...|..+
T Consensus 332 ~TE~~~~~~~----~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 406 (539)
T 1mdb_A 332 MAEGLVNYTR----LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTED 406 (539)
T ss_dssp CTTSCEEECC----TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTT
T ss_pred CCCCcccccC----CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCC
Confidence 9996532221 111112234678999976 4899999 689999999999999999999999999999999999889
Q ss_pred CceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCH
Q 010425 415 GWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE 494 (511)
Q Consensus 415 ~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 494 (511)
+||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++. +...+.
T Consensus 407 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~-~~~~~~ 485 (539)
T 1mdb_A 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR-DEAPKA 485 (539)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-SSCCCH
T ss_pred CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEEC-CCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999998899999999987 346778
Q ss_pred HHHHHHHHhc-ccCCCC
Q 010425 495 DEIKQYISKQ-VIFFSH 510 (511)
Q Consensus 495 ~~l~~~l~~~-l~~~~~ 510 (511)
++++++++++ ||+||+
T Consensus 486 ~~l~~~l~~~~L~~~~~ 502 (539)
T 1mdb_A 486 AELKAFLRERGLAAYKI 502 (539)
T ss_dssp HHHHHHHHHTTCCGGGS
T ss_pred HHHHHHHHhCCCCcccC
Confidence 9999999998 999986
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=6.8e-75 Score=594.12 Aligned_cols=476 Identities=23% Similarity=0.334 Sum_probs=343.8
Q ss_pred CCCCCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhh
Q 010425 21 IPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYI 100 (511)
Q Consensus 21 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~ 100 (511)
.+...|+.++|.++++++|+++|++++ ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 344589999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHHHhcCceEEEEcccch-----HHHHHHhhhc-C-CeEEEeCCCCCCccchHHHHhhccCCC
Q 010425 101 GATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN-----DKVRDLSEHH-G-ARIVTIDPPPENCLHFSELITQADENE 173 (511)
Q Consensus 101 G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~~~~~~~~~~ 173 (511)
|++++|+++.++.+++.++++.++++++|++.... .......... . ..++.++.. .....+.++........
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 182 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ-ATDFGLLDWIETPAETF 182 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC-TTSEEHHHHHHSCCSSC
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC-ccccchhhhhhcccccc
Confidence 99999999999999999999999999999987653 2333332222 2 233344332 12223444423222222
Q ss_pred CCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHH-HHHHHHHh
Q 010425 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS-VLLCALRV 252 (511)
Q Consensus 174 ~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~ 252 (511)
.+.....++++++++|||||||.||+|.++|.++.+.+..... .+++.+++++++.+|++|.+++.. .++.++..
T Consensus 183 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 258 (544)
T 3o83_A 183 VDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE----ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHA 258 (544)
T ss_dssp CCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred cccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHH----HhCCCCCCeEEEecCcceEeecchHHHHHHHHc
Confidence 2234567899999999999999999999999999988887766 345889999999999999998854 57889999
Q ss_pred CcEEEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceec
Q 010425 253 GAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332 (511)
Q Consensus 253 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~ 332 (511)
|+++++.+.+++..+++.|+++++|++.++|+++..+++........++++|.+++||+++++++.+++.+.+ ++++++
T Consensus 259 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~ 337 (544)
T 3o83_A 259 GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQ 337 (544)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEe
Confidence 9999999999999999999999999999999999999988766666788999999999999999999999998 899999
Q ss_pred cccccCCCccccccccccCCCcccCCCcceecc-CCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhc
Q 010425 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVV-RNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI 411 (511)
Q Consensus 333 ~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~ 411 (511)
.||+||++..+..+ .........++|+|+ ++++++|+| ++++++++|+.|||+++|++++.||+++++.+...|
T Consensus 338 ~YG~TE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 412 (544)
T 3o83_A 338 VFGMAEGLVNYTRL----DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVF 412 (544)
T ss_dssp EEECTTSCEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHB
T ss_pred eeccccccceeecC----CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhC
Confidence 99999987443321 111222346789996 899999999 789999999999999999999999999999999999
Q ss_pred CCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCC
Q 010425 412 DKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSK 491 (511)
Q Consensus 412 ~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 491 (511)
..++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+..+ ..
T Consensus 413 ~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~ 491 (544)
T 3o83_A 413 DEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PE 491 (544)
T ss_dssp CTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------------------
T ss_pred CCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999876 45
Q ss_pred CCHHHHHHHHHh-cccCCCC
Q 010425 492 ITEDEIKQYISK-QVIFFSH 510 (511)
Q Consensus 492 ~~~~~l~~~l~~-~l~~~~~ 510 (511)
.+.+++++++++ +||+||+
T Consensus 492 ~~~~~l~~~~~~~~l~~~~~ 511 (544)
T 3o83_A 492 LKAVVLRRHLMELGIAQYKL 511 (544)
T ss_dssp --------------------
T ss_pred CCHHHHHHHHHhCCCCcccC
Confidence 667889999999 7999985
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4e-73 Score=576.30 Aligned_cols=458 Identities=23% Similarity=0.349 Sum_probs=395.0
Q ss_pred CCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeE
Q 010425 25 LPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104 (511)
Q Consensus 25 ~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 104 (511)
.|+.++|.++++++|+++|+.+.+.++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 58999999999999999999986556899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCceEEEE--cccchHHH-HHHhhhcCCeEEEeCCCCCCccchHHHHhhcc----CCCCCCc
Q 010425 105 TTANPFYTPPEIAKQAIASKAKIIIT--QAVYNDKV-RDLSEHHGARIVTIDPPPENCLHFSELITQAD----ENEIPAV 177 (511)
Q Consensus 105 v~~~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 177 (511)
+|++|.++.+++.+++++++++++++ +......+ ... ...+++. ++++..... ....+..
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 148 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGARIIF----------LGDLVRDGEPYSYGPPIEDP 148 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCEEEE----------GGGTEETTEECCCSCCCCCC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccceeEE----------ecchhhcCcccccCCccCCC
Confidence 99999999999999999999999999 66654443 221 1223222 222211100 1111223
Q ss_pred CCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCccc--CCCcEEEEecchhhHHHhHHHHHHHHHhCcE
Q 010425 178 KINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL--HKEDVILCVLPLFHIYSLNSVLLCALRVGAA 255 (511)
Q Consensus 178 ~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 255 (511)
...++++++++|||||||.||+|.++|+++.+.+...... +++ .+++++++.+|++|.+|+...++.++..|++
T Consensus 149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~ 224 (504)
T 1t5h_X 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQ----VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224 (504)
T ss_dssp CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHT----TCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCE
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHh----hCCCCCCCceEEeecchhhcchHHHHHHHHHHcCce
Confidence 4578999999999999999999999999998887766553 345 7889999999999999986678899999999
Q ss_pred EEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCC--CCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceecc
Q 010425 256 ILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQG 333 (511)
Q Consensus 256 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~ 333 (511)
+++.+.+++..+++.|+++++|+++++|+++..|++... .....++++|.+++||+++++++.+++.+.+ ++++++.
T Consensus 225 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 303 (504)
T 1t5h_X 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNI 303 (504)
T ss_dssp EEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeee
Confidence 999999999999999999999999999999999987652 2445678999999999999999999999999 7899999
Q ss_pred ccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCC---CCCCCCCcceEEEe-cccchhhccCChhhhhh
Q 010425 334 YGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTG---ISLPRNQAGEICIR-GAQIMKGYLNDREATET 409 (511)
Q Consensus 334 Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~---~~~~~g~~Gei~v~-~~~~~~gy~~~~~~~~~ 409 (511)
||+||++ .+... . ....++.|.|.++++++++|. .+ ++++.|+.|||+++ |++++.||+++++.+.+
T Consensus 304 YG~TE~~-~~~~~-~------~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~ 374 (504)
T 1t5h_X 304 YGTTEAM-NSLYM-R------QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374 (504)
T ss_dssp EEETTTE-EEEEE-E------SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHH
T ss_pred ecccccc-ccccc-c------CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhh
Confidence 9999993 22211 1 235578999999999999995 45 89999999999999 89999999999999999
Q ss_pred hcCCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCC
Q 010425 410 TIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNG 489 (511)
Q Consensus 410 ~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 489 (511)
.| .++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++
T Consensus 375 ~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~ 453 (504)
T 1t5h_X 375 KL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG 453 (504)
T ss_dssp HE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT
T ss_pred hh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC
Confidence 98 78999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCHHHHHHHHHh-cccCCCC
Q 010425 490 SKITEDEIKQYISK-QVIFFSH 510 (511)
Q Consensus 490 ~~~~~~~l~~~l~~-~l~~~~~ 510 (511)
...+.+++++++++ +||+||+
T Consensus 454 ~~~~~~~l~~~~~~~~L~~~~~ 475 (504)
T 1t5h_X 454 ETLSADALDTFCRSSELADFKR 475 (504)
T ss_dssp CCCCHHHHHHHHHTSSCCGGGS
T ss_pred cCcCHHHHHHHHhhccCccccc
Confidence 77889999999999 9999986
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.4e-73 Score=583.93 Aligned_cols=476 Identities=27% Similarity=0.414 Sum_probs=379.1
Q ss_pred CCCHhhHHhhhcccCCCCcEEEeC--CCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhC
Q 010425 24 HLPLHTYCFENISQFADRPCIING--PTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101 (511)
Q Consensus 24 ~~t~~~~l~~~~~~~p~~~a~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G 101 (511)
..|+.++|.++++++|+++|+++. ..++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 368999999999999999999853 225899999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcC-C-eEEEeCCCC-CCccchHHHHhhccCCCCCCcC
Q 010425 102 ATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHG-A-RIVTIDPPP-ENCLHFSELITQADENEIPAVK 178 (511)
Q Consensus 102 ~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~-~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 178 (511)
++++|++|.++.+++.++++.++++++|+++.....+........ . .++.++... .....++++..... +...
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 172 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA----DPVR 172 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC----CCCC
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC----Cccc
Confidence 999999999999999999999999999999887776666544432 2 344444322 12334555422111 1134
Q ss_pred CCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEE
Q 010425 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (511)
Q Consensus 179 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 258 (511)
.+++++++++|||||||.||+|.++|+++......... ...+++.++|++++.+|++|..++ ...+.++..|+++++
T Consensus 173 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~--~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~ 249 (541)
T 1v25_A 173 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL--VDGTALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVL 249 (541)
T ss_dssp CCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTS--TTTTCCCTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEE
T ss_pred CCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhh--cccccCCCCCEEEEeccchhhhHH-HHHHHHHhcCceEEe
Confidence 56789999999999999999999999999876654221 113467899999999999999998 567788999999999
Q ss_pred ccC-CCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceecccccc
Q 010425 259 MQK-FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMT 337 (511)
Q Consensus 259 ~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~t 337 (511)
.+. +++..+++.|+++++|+++++|+++..|++........++++|.+++||+++++++.+++ +.+ ++++++.||+|
T Consensus 250 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~T 327 (541)
T 1v25_A 250 PGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLT 327 (541)
T ss_dssp CTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECG
T ss_pred eCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeeccccc
Confidence 864 699999999999999999999999999987654444567899999999999999999999 667 89999999999
Q ss_pred CCCccccccccccCC------CcccCCCcceeccCCceEEEEcCCCCCCCCC--CCcceEEEecccchhhccCChhhhhh
Q 010425 338 EAGPVLSMCLAFAKE------PFEIKSGACGTVVRNAEMKIVDPDTGISLPR--NQAGEICIRGAQIMKGYLNDREATET 409 (511)
Q Consensus 338 E~~~~~~~~~~~~~~------~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~--g~~Gei~v~~~~~~~gy~~~~~~~~~ 409 (511)
|++.+++.+...... ......+++|+|+++++++|+| +++++++. ++.|||+++|++++.||+++++.+..
T Consensus 328 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~ 406 (541)
T 1v25_A 328 ETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 406 (541)
T ss_dssp GGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHT
T ss_pred ccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhh
Confidence 998766543211000 0012346889999999999999 57888874 36899999999999999999999999
Q ss_pred hcCCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCC
Q 010425 410 TIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNG 489 (511)
Q Consensus 410 ~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 489 (511)
.|.+++||+|||+|++++||.++++||++|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++. +
T Consensus 407 ~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~ 485 (541)
T 1v25_A 407 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-G 485 (541)
T ss_dssp TBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----
T ss_pred hccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-C
Confidence 998899999999999999999999999999999999999999999999999999999999999999999999999976 4
Q ss_pred CCCCHHHHHHHHHh-cccCCCC
Q 010425 490 SKITEDEIKQYISK-QVIFFSH 510 (511)
Q Consensus 490 ~~~~~~~l~~~l~~-~l~~~~~ 510 (511)
...+.+++++++++ +||+||+
T Consensus 486 ~~~~~~~l~~~~~~~~L~~~~~ 507 (541)
T 1v25_A 486 EKPTPEELNEHLLKAGFAKWQL 507 (541)
T ss_dssp ---------------CCCTTTS
T ss_pred CCCCHHHHHHHHHhccCccccC
Confidence 55667889999999 9999985
No 13
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=6e-73 Score=590.42 Aligned_cols=477 Identities=23% Similarity=0.344 Sum_probs=402.3
Q ss_pred CHhhHHhhhcccCCCCcEEEeCC----CCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhC
Q 010425 26 PLHTYCFENISQFADRPCIINGP----TGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101 (511)
Q Consensus 26 t~~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G 101 (511)
++.++|.++++++|+++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 56788889999999999999631 24799999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCceEEEEcccch---------HHHHHHhhhc----CCeEEEeCCCC-------CCccc
Q 010425 102 ATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN---------DKVRDLSEHH----GARIVTIDPPP-------ENCLH 161 (511)
Q Consensus 102 ~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~i~~~~~~-------~~~~~ 161 (511)
++++|+++.++.+++.+++++++++++|+++... ..+.+..... ...++.++... .....
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 236 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence 9999999999999999999999999999987542 2333333222 13455554321 11234
Q ss_pred hHHHHhhccCCCCCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHH
Q 010425 162 FSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYS 241 (511)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 241 (511)
|.++.... ....+....+++++++++|||||||.||+|.++|.++...+...... .+++.++|++++..|++|..|
T Consensus 237 ~~~~~~~~-~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~g 312 (652)
T 1pg4_A 237 WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTG 312 (652)
T ss_dssp HHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHH
T ss_pred HHHHHhhc-CCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH---hcCCCCCCEEEEccCCeeeec
Confidence 66653322 22233345678999999999999999999999999987665432211 245789999999999999999
Q ss_pred hHHHHHHHHHhCcEEEEccC----CCHHHHHHHHHhccCceeecchHHHHHHHhcCC--CCCCCCCcceeeeeeccCCCH
Q 010425 242 LNSVLLCALRVGAAILIMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD--VDKYDMSSIRTVMSGAAPMGK 315 (511)
Q Consensus 242 ~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~~~Ge~l~~ 315 (511)
+...++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++... ....+++++|.++++||++++
T Consensus 313 ~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 392 (652)
T 1pg4_A 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINP 392 (652)
T ss_dssp HHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCH
T ss_pred hHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCH
Confidence 87778899999999999864 589999999999999999999999999988654 334568899999999999999
Q ss_pred HHHHHHHHHCC--CCceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEec
Q 010425 316 ELEDAVRAKLP--HAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG 393 (511)
Q Consensus 316 ~~~~~~~~~~~--~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~ 393 (511)
++.+++.+.++ ++++++.||+||++..++... ........+++|+|+++++++|+| +++++++.|+.|||+++|
T Consensus 393 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~---~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g 468 (652)
T 1pg4_A 393 EAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL---PGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITD 468 (652)
T ss_dssp HHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC---TTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECS
T ss_pred HHHHHHHHHhCCCCCcEEccccCcccccceecCC---CCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEcc
Confidence 99999999883 289999999999986555421 112235678999999999999999 579999999999999999
Q ss_pred --ccchhhccCChhhhhhhcC--CCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEE
Q 010425 394 --AQIMKGYLNDREATETTID--KEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVV 469 (511)
Q Consensus 394 --~~~~~gy~~~~~~~~~~~~--~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~ 469 (511)
|++++|||++++.+...+. .+|||+|||+|++++||.++++||+||+||++|++|+|.+||++|.+||+|.+++|+
T Consensus 469 ~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv 548 (652)
T 1pg4_A 469 SWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548 (652)
T ss_dssp CCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEE
T ss_pred CCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 7999999999988877653 378999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCceEEEEEEeCCCCCCC---HHHHHHHHHhcccCCCC
Q 010425 470 PMKDEAAGEVPVAFVVRSNGSKIT---EDEIKQYISKQVIFFSH 510 (511)
Q Consensus 470 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~ 510 (511)
+.+++..++.++++|++.++...+ .++|+++|+++|++||+
T Consensus 549 g~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 592 (652)
T 1pg4_A 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLAT 592 (652)
T ss_dssp EEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGC
T ss_pred EEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcC
Confidence 999998899999999998775544 57899999999999986
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.5e-72 Score=576.04 Aligned_cols=475 Identities=21% Similarity=0.334 Sum_probs=404.3
Q ss_pred CCCCCC-CHhhHHhhhccc-----CCCCcEEEeCC---CCCeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCChh
Q 010425 20 YIPNHL-PLHTYCFENISQ-----FADRPCIINGP---TGDVYTYADVELTSRKVAAGLSKL-GVQKGDVIMLLLQNCPQ 89 (511)
Q Consensus 20 ~~~~~~-t~~~~l~~~~~~-----~p~~~a~~~~~---~~~~~Ty~~l~~~~~~la~~L~~~-gi~~g~~V~i~~~~~~~ 89 (511)
..|... ++.++|.+++++ +|+++|+++.+ .++++||+||.++++++|++|++. |+++||+|+++++|+++
T Consensus 32 ~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 32 EVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp CCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 344434 456889999888 99999998732 137899999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcC-C-eEEEeCC-CCCCccchHHHH
Q 010425 90 FVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHG-A-RIVTIDP-PPENCLHFSELI 166 (511)
Q Consensus 90 ~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~-~~i~~~~-~~~~~~~~~~~~ 166 (511)
+++++|||+++|++++|++|.++.+++.++++.++++++|++......+........ . .++.++. .......++++.
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLL 191 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHH
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHh
Confidence 999999999999999999999999999999999999999999888777666544432 2 3445543 223344566654
Q ss_pred hhccCCCCCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHH--HHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHH
Q 010425 167 TQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVT--SVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS 244 (511)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 244 (511)
.... ...+.....++++++++|||||||.||+|.++|. +.. ..... . .+++.++|++++..|++|..++..
T Consensus 192 ~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~----~~~~~~~d~~~~~~p~~~~~~~~~ 264 (570)
T 3c5e_A 192 NEAS-TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-G----WTGLQASDIMWTISDTGWILNILC 264 (570)
T ss_dssp HHSC-SCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-T----TTSCCTTCEEEECCCTTSHHHHHH
T ss_pred hccc-ccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-h----hcCCCCCceEEEcCchHHHHHHHH
Confidence 3322 2223345678999999999999999999999999 444 22222 2 456889999999999999999866
Q ss_pred HHHHHHHhCcEEEEcc--CCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHH
Q 010425 245 VLLCALRVGAAILIMQ--KFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVR 322 (511)
Q Consensus 245 ~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~ 322 (511)
.++.++..|+++++.+ .+++..+++.|+++++|+++++|+++..+.+.. .....++++|.+++|||++++++.++|.
T Consensus 265 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~ 343 (570)
T 3c5e_A 265 SLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWR 343 (570)
T ss_dssp TTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHH
Confidence 7888999999999986 689999999999999999999999999998863 3344678999999999999999999999
Q ss_pred HHCCCCceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEe-----cccch
Q 010425 323 AKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR-----GAQIM 397 (511)
Q Consensus 323 ~~~~~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~-----~~~~~ 397 (511)
+.+ ++++++.||+||++..++.. .......+++|+|+++++++|+| +++++++.|+.|||+++ |++++
T Consensus 344 ~~~-g~~i~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~ 416 (570)
T 3c5e_A 344 AQT-GLDIRESYGQTETGLTCMVS-----KTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIF 416 (570)
T ss_dssp HHH-SCCCEEEEEETTTEEEEECC-----TTSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCC
T ss_pred HHh-CCchhhccchhhcccceecC-----cccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhh
Confidence 988 89999999999998654432 11234567899999999999999 57999999999999999 99999
Q ss_pred hhccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCC
Q 010425 398 KGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAG 477 (511)
Q Consensus 398 ~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~ 477 (511)
.||+++++.+...| .++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..+
T Consensus 417 ~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 495 (570)
T 3c5e_A 417 SGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRG 495 (570)
T ss_dssp CEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred ccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCC
Confidence 99999999999988 58999999999999999999999999999999999999999999999999999999999998889
Q ss_pred ceEEEEEEeCCCC--C---CCHHHHHHHHHhcccCCCC
Q 010425 478 EVPVAFVVRSNGS--K---ITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 478 ~~~~~~v~~~~~~--~---~~~~~l~~~l~~~l~~~~~ 510 (511)
+.++++|++.++. . ...++|+++|+++||+||+
T Consensus 496 ~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~ 533 (570)
T 3c5e_A 496 EVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKY 533 (570)
T ss_dssp EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGS
T ss_pred eEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccC
Confidence 9999999987652 1 1257899999999999986
No 15
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=6.9e-73 Score=575.98 Aligned_cols=464 Identities=22% Similarity=0.290 Sum_probs=397.9
Q ss_pred CCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeE
Q 010425 25 LPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104 (511)
Q Consensus 25 ~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 104 (511)
+|+.++|.++++++|+++|+++. ++++||+||+++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 78 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY 78 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 58999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHhhc-cCCCCCCcCCCCCC
Q 010425 105 TTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQA-DENEIPAVKINPDD 183 (511)
Q Consensus 105 v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (511)
+|++|.++.+++.++++.+++++++++...... ......+.. ..+.++.... .....+.....+++
T Consensus 79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d 145 (512)
T 3fce_A 79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLPVRIVSE-------DNLKDIFFTHKGNTPNPEHAVKGDE 145 (512)
T ss_dssp EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCSSEEEET-------HHHHHHHHHTTTCCCCGGGSCCTTS
T ss_pred EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccccceech-------hhhhhhcccccccCCCccccCCCCC
Confidence 999999999999999999999999997543210 001111111 1122221111 11222334567899
Q ss_pred EEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEccC--
Q 010425 184 VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK-- 261 (511)
Q Consensus 184 ~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-- 261 (511)
+++++|||||||.||+|.++|.++.+.+..... .+++.++|++++..|++|..++ ..++.++..|+++++.+.
T Consensus 146 ~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~ 220 (512)
T 3fce_A 146 NFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE----DFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDM 220 (512)
T ss_dssp EEEEEEECC----CEEEEEEHHHHHHHHHHHHH----HTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHH
T ss_pred eEEEEECCCCCCCCceEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHH
Confidence 999999999999999999999999988877766 3458899999999999999998 678899999999999876
Q ss_pred -CCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccccCCC
Q 010425 262 -FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340 (511)
Q Consensus 262 -~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~tE~~ 340 (511)
.++..+++.|+++++|++.++|+++..++.........++++|.++++|+++++++.+++.+.|+++++++.||+||++
T Consensus 221 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 300 (512)
T 3fce_A 221 IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEAT 300 (512)
T ss_dssp HHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGS
T ss_pred hhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhh
Confidence 6899999999999999999999999999988777777889999999999999999999999999999999999999998
Q ss_pred ccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhc---CCCCce
Q 010425 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI---DKEGWL 417 (511)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~---~~~~~~ 417 (511)
..++.+.............++|+|.++++++|+| ++++++++|+.|||+++|++++.||+++++.+...| ++++||
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 379 (512)
T 3fce_A 301 VAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAY 379 (512)
T ss_dssp SCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred hheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEE
Confidence 7665432211111233567899999999999999 789999999999999999999999999999999887 456799
Q ss_pred ecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCH---
Q 010425 418 HTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE--- 494 (511)
Q Consensus 418 ~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~--- 494 (511)
+|||+|++ +||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++++|++.++...+.
T Consensus 380 ~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 458 (512)
T 3fce_A 380 KTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKL 458 (512)
T ss_dssp EEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHH
T ss_pred eCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhh
Confidence 99999999 89999999999999999999999999999999999999999999999888999999999987644443
Q ss_pred -HHHHHHHHhcccCCCC
Q 010425 495 -DEIKQYISKQVIFFSH 510 (511)
Q Consensus 495 -~~l~~~l~~~l~~~~~ 510 (511)
++++++++++||.||+
T Consensus 459 ~~~l~~~l~~~L~~~~~ 475 (512)
T 3fce_A 459 TSAIKKELNERLPNYMI 475 (512)
T ss_dssp HHHHHHHHHTTSCGGGS
T ss_pred HHHHHHHHHhhCchhcC
Confidence 5799999999999986
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.1e-73 Score=579.29 Aligned_cols=464 Identities=27% Similarity=0.413 Sum_probs=331.1
Q ss_pred CCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCe
Q 010425 24 HLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103 (511)
Q Consensus 24 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 103 (511)
.+|+.++|.++++++|+++|+++. ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 389999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhc-C-CeEEEeCCCCCCccchHHHHhhccCCCCCCcCCCC
Q 010425 104 STTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH-G-ARIVTIDPPPENCLHFSELITQADENEIPAVKINP 181 (511)
Q Consensus 104 ~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (511)
++|++|.++.+++.++++.++++++|++......+....... . ..++.++.... .+.++.........+.....+
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG---PFAPFKDLASDTPFSAPEFGA 159 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS---SCEEGGGTCCCSCCCCCCCCT
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc---ChhhHhhccCCCCCCcCCCCc
Confidence 999999999999999999999999999988777644443333 2 23444443222 222221112223334456788
Q ss_pred CCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEccC
Q 010425 182 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK 261 (511)
Q Consensus 182 ~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 261 (511)
+++++++|||||||.||+|.++|+++.+.+..... .+++.++|++++.+|++|.+|+...+. ++..|+..++...
T Consensus 160 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~-~~~~~g~~~~~~~ 234 (509)
T 3ivr_A 160 ADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD----AWRLTEADVNLGMLPLFHVTGLGLMLT-LQQAGGASVIAAK 234 (509)
T ss_dssp TSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHHHH-HHHHTCEEEECSS
T ss_pred cccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCcEEEEeCCCcchhHHHHHHH-HHHhCCcEEEecc
Confidence 99999999999999999999999999988887766 345889999999999999999844444 4445555555558
Q ss_pred CCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccccCCCc
Q 010425 262 FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGP 341 (511)
Q Consensus 262 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~tE~~~ 341 (511)
+++..+++.|+++++|+++++|+++..+++.. ....++++|.++.+|++ +..+++.+.++++++++.||+||++.
T Consensus 235 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~ 309 (509)
T 3ivr_A 235 FDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSG 309 (509)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTE
T ss_pred cCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccccc
Confidence 89999999999999999999999999999876 34557899999999987 88999999999999999999999997
Q ss_pred cccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCCCceecCc
Q 010425 342 VLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGD 421 (511)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD 421 (511)
+++.+.. ......+|+|+++++++|+| +++++++.|+.|||+++|++++.||+++++.+...| .++||+|||
T Consensus 310 ~~~~~~~------~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGD 381 (509)
T 3ivr_A 310 LSTFAPY------RDRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGD 381 (509)
T ss_dssp EEEEEEG------GGSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEE
T ss_pred ccccCcc------ccCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCccccc
Confidence 7665421 12234589999999999999 569999999999999999999999999999999999 589999999
Q ss_pred eEEEcCCCcEEEEccc--CceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q 010425 422 IGYIDDDDELFIVDRL--KELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQ 499 (511)
Q Consensus 422 l~~~~~~g~~~~~GR~--~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 499 (511)
+|++++||.++++||. +|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.++|++
T Consensus 382 l~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~ 461 (509)
T 3ivr_A 382 MGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAE 461 (509)
T ss_dssp EEEECTTSCEEEEEEC----------------------------------------------------------------
T ss_pred EEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHH
Confidence 9999999999999999 89999999999999999999999999999999999998899999999998887888899999
Q ss_pred HHHhcccCCCC
Q 010425 500 YISKQVIFFSH 510 (511)
Q Consensus 500 ~l~~~l~~~~~ 510 (511)
+++++||+||+
T Consensus 462 ~l~~~L~~~~~ 472 (509)
T 3ivr_A 462 FVASLIARYKK 472 (509)
T ss_dssp -----------
T ss_pred HHHhhCcccCC
Confidence 99999999985
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.4e-72 Score=571.59 Aligned_cols=463 Identities=21% Similarity=0.269 Sum_probs=399.8
Q ss_pred CCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCChhHHHHHHHHHhhCCe
Q 010425 25 LPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKL-GVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103 (511)
Q Consensus 25 ~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 103 (511)
+|+.++|.++++++|+++|+++. ++++||+||+++++++|++|.+. |.++|++|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 58899999999999999999987 89999999999999999999874 8889999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHhhccCCCCCCcCCCCCC
Q 010425 104 STTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDD 183 (511)
Q Consensus 104 ~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (511)
++|++|.++.+++.++++.++++++|++...... ... .......+.++.........+.....+++
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG--------QQIQTVSAEELLENEGGSVSQDQWVKEHE 144 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC--------CSSCEEEHHHHHTSCSCCCCGGGSCCTTS
T ss_pred EEecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc--------cccceecHhhhhccccCCccccccCCCCC
Confidence 9999999999999999999999999996543210 000 00112233444222222222334567899
Q ss_pred EEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEccC--
Q 010425 184 VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK-- 261 (511)
Q Consensus 184 ~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-- 261 (511)
+++++|||||||.||+|.++|.++.+.+..... .+++.+++++++..|++|..++ ..++.++..|+++++.+.
T Consensus 145 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~ 219 (511)
T 3e7w_A 145 TFYIIYTSGSTGNPKGVQISAANLQSFTDWICA----DFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDA 219 (511)
T ss_dssp EEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH----HSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHH
T ss_pred eEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH----hcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhh
Confidence 999999999999999999999999988877765 3457899999999999999987 678889999999999875
Q ss_pred -CCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccccCCC
Q 010425 262 -FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340 (511)
Q Consensus 262 -~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~tE~~ 340 (511)
.++..+++.|+++++|++.++|+++..++.........++++|.++++|+++++++.+++.+.|+++++++.||+||++
T Consensus 220 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 299 (511)
T 3e7w_A 220 VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT 299 (511)
T ss_dssp HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGS
T ss_pred hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchhe
Confidence 6899999999999999999999999999988777777789999999999999999999999999999999999999998
Q ss_pred ccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcC---CCCce
Q 010425 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID---KEGWL 417 (511)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~---~~~~~ 417 (511)
..++.+.............++|+|+++++++|+| +++++++.|+.|||+++|++++.||+++++.+...|. +..||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~ 378 (511)
T 3e7w_A 300 VAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAY 378 (511)
T ss_dssp SCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEE
T ss_pred eeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEE
Confidence 7666442222111234556799999999999999 5799999999999999999999999999999998883 22379
Q ss_pred ecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCC----
Q 010425 418 HTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKIT---- 493 (511)
Q Consensus 418 ~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---- 493 (511)
+|||+|++ +||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++....
T Consensus 379 ~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 457 (511)
T 3e7w_A 379 RTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQL 457 (511)
T ss_dssp EEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHH
T ss_pred eCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhH
Confidence 99999999 6999999999999999999999999999999999999999999999888899999999998765444
Q ss_pred HHHHHHHHHhcccCCCC
Q 010425 494 EDEIKQYISKQVIFFSH 510 (511)
Q Consensus 494 ~~~l~~~l~~~l~~~~~ 510 (511)
.++++++++++||.||+
T Consensus 458 ~~~l~~~l~~~L~~~~~ 474 (511)
T 3e7w_A 458 TSAIKKELAASLPAYMI 474 (511)
T ss_dssp HHHHHHHHHHHSCGGGS
T ss_pred HHHHHHHHHhhCchhhC
Confidence 36799999999999986
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.5e-71 Score=566.76 Aligned_cols=468 Identities=25% Similarity=0.354 Sum_probs=389.4
Q ss_pred CHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEe
Q 010425 26 PLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105 (511)
Q Consensus 26 t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 105 (511)
++.++|.++++ +|+++|+++. ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 48889999999 9999999976 68999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhc---CCeEEEeCCCCC---CccchHHHHhhccCCCCCCcCC
Q 010425 106 TANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH---GARIVTIDPPPE---NCLHFSELITQADENEIPAVKI 179 (511)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 179 (511)
|+++.++.+++.+++++++++++|++......+....... ...++..+.... ....++++... .....+....
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDA-AAPAAKAAAT 180 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHT-SCCCSSCCCC
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhcc-CCCcccccCC
Confidence 9999999999999999999999999988766665543321 133444443211 12245555332 2222233456
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHH-HHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEE
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 258 (511)
+++++++++|||||||.||+|.++|+++ ......... .+++.+++++++..|++|.+|+...++.++..|+++++
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 256 (529)
T 2v7b_A 181 GCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKP----ILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAIL 256 (529)
T ss_dssp CTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCC----CCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEEC
T ss_pred CCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhh----ccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEE
Confidence 7899999999999999999999999998 444433322 45688999999999999999987777889999999998
Q ss_pred c-cCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceecccccc
Q 010425 259 M-QKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMT 337 (511)
Q Consensus 259 ~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~t 337 (511)
. +.+++..+++.|+++++|+++++|+++..+++..........++|.+++|||++++++.+++.+.+ ++++++.||+|
T Consensus 257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~T 335 (529)
T 2v7b_A 257 MAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGST 335 (529)
T ss_dssp CCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECT
T ss_pred ecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchh
Confidence 7 568999999999999999999999999999887554433123899999999999999999999988 89999999999
Q ss_pred CCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCCCce
Q 010425 338 EAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWL 417 (511)
Q Consensus 338 E~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~~ 417 (511)
|++.++..+ .......+++|+|+++++++|+| ++++++++|+.|||+++|++++.||+++++.+...| .++||
T Consensus 336 E~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~ 408 (529)
T 2v7b_A 336 EMLHIFLSN-----RAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWI 408 (529)
T ss_dssp TTSSEEEEC-----CTTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEE
T ss_pred hcCceeecc-----ccCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCc
Confidence 997655433 11224567899999999999999 689999999999999999999999999999999988 58999
Q ss_pred ecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCC---CH
Q 010425 418 HTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKI---TE 494 (511)
Q Consensus 418 ~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~ 494 (511)
+|||+|+++++|.++++||+||+||++|++|+|.+||++|.++|+|.+++|++. ++..++.++++|++.++... ..
T Consensus 409 ~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~ 487 (529)
T 2v7b_A 409 RSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILA 487 (529)
T ss_dssp EEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHH
T ss_pred ccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHH
Confidence 999999999999999999999999999999999999999999999999999998 66677889999998766321 34
Q ss_pred HHHHHHHHhcccCCCC
Q 010425 495 DEIKQYISKQVIFFSH 510 (511)
Q Consensus 495 ~~l~~~l~~~l~~~~~ 510 (511)
++|+++++++||+||+
T Consensus 488 ~~l~~~l~~~L~~~~~ 503 (529)
T 2v7b_A 488 EELKAFVKDRLAPHKY 503 (529)
T ss_dssp HHHHHHHHTTSCTTTS
T ss_pred HHHHHHHHhhcchhhC
Confidence 6899999999999986
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4.8e-72 Score=581.26 Aligned_cols=472 Identities=22% Similarity=0.364 Sum_probs=404.0
Q ss_pred CCCCCCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q 010425 20 YIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASY 99 (511)
Q Consensus 20 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~ 99 (511)
..+...|+.++|.++++ |+++|++++ ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||++
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~ 97 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLK 97 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 34556899999999988 999999987 89999999999999999999999999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccch-----HHHHHHhhhc-CCeEEEe-CCCCCCccchHHHHhhccCC
Q 010425 100 IGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN-----DKVRDLSEHH-GARIVTI-DPPPENCLHFSELITQADEN 172 (511)
Q Consensus 100 ~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-~~~~i~~-~~~~~~~~~~~~~~~~~~~~ 172 (511)
+|++++|++|.++.+++.++++.+++++++++.... .......... ....+.+ +.. ....+.+... ....
T Consensus 98 aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~ 174 (617)
T 3rg2_A 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS--GEHNLQDAIN-HPAE 174 (617)
T ss_dssp HTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC--STTBHHHHHH-SCCS
T ss_pred cCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccc--cccchhhhhc-cccc
Confidence 999999999999999999999999999999987654 2223322222 2333333 222 1223343322 2222
Q ss_pred CCCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHH-HHHHHHH
Q 010425 173 EIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS-VLLCALR 251 (511)
Q Consensus 173 ~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~ 251 (511)
........++++++++|||||||.||+|.++|+++.+.+..... .+++.+++++++..|++|.+++.. .++.++.
T Consensus 175 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~ 250 (617)
T 3rg2_A 175 DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFL 250 (617)
T ss_dssp SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH----hcCCCCcceEEEeccchhhhhhhHHHHHHHHH
Confidence 33344567899999999999999999999999999988877765 345889999999999999988744 5888999
Q ss_pred hCcEEEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCC--CCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCc
Q 010425 252 VGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDV--DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK 329 (511)
Q Consensus 252 ~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~ 329 (511)
.|+++++.+..++..+++.|+++++|++.++|+++..+++.... ....++++|.+++|||++++++.+++.+.+ +++
T Consensus 251 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~ 329 (617)
T 3rg2_A 251 AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQ 329 (617)
T ss_dssp HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSE
T ss_pred cCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCc
Confidence 99999999989999999999999999999999999998875432 233678999999999999999999999998 899
Q ss_pred eeccccccCCCccccccccccCCCcccCCCcceecc-CCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhh
Q 010425 330 LGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVV-RNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATE 408 (511)
Q Consensus 330 i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~ 408 (511)
+++.||+||++..++.+ .........+.|+|+ ++.+++|+| +++++++.|+.|||+++|+++++||+++++.+.
T Consensus 330 ~~~~YG~tE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~ 404 (617)
T 3rg2_A 330 LQQVFGMAEGLVNYTRL----DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNA 404 (617)
T ss_dssp EEEEEEETTEEEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHH
T ss_pred EEEEeccCcceeecccC----CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhh
Confidence 99999999987544322 111122335679997 788999999 689999999999999999999999999999999
Q ss_pred hhcCCCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCC
Q 010425 409 TTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSN 488 (511)
Q Consensus 409 ~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 488 (511)
..|..++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+
T Consensus 405 ~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~ 484 (617)
T 3rg2_A 405 SAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE 484 (617)
T ss_dssp HHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred hccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999875
Q ss_pred CCCCCHHHHHHHHHh-cccCCCC
Q 010425 489 GSKITEDEIKQYISK-QVIFFSH 510 (511)
Q Consensus 489 ~~~~~~~~l~~~l~~-~l~~~~~ 510 (511)
..+.+++++++++ +||.||+
T Consensus 485 --~~~~~~l~~~l~~~~lp~~~v 505 (617)
T 3rg2_A 485 --PLRAVQVRRFLREQGIAEFKL 505 (617)
T ss_dssp --CCCHHHHHHHHHTTTCCGGGS
T ss_pred --CCCHHHHHHHHHhCCCccccC
Confidence 5778899999999 6999986
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=6.3e-72 Score=573.28 Aligned_cols=463 Identities=22% Similarity=0.315 Sum_probs=390.3
Q ss_pred CCCCCCCCCCCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHH
Q 010425 15 KLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAF 94 (511)
Q Consensus 15 ~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~ 94 (511)
+....+.+...|+.++|.++++++|+++|+++. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 29 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 29 NNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp TCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 334445565679999999999999999999986 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHhhccCCCC
Q 010425 95 LGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEI 174 (511)
Q Consensus 95 lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 174 (511)
|||+++|++++|++|.++.+++.+++++++++++|++......+..... ...+..++... + .. .....
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~-----~----~~-~~~~~ 174 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--NGQVEIFEEDT-----I----KI-REGTN 174 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC--CSEEEECCCST-----T----TT-SCCSC
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc--cCceeeecchh-----h----cc-ccCcc
Confidence 9999999999999999999999999999999999999876544332211 12233332210 0 00 01111
Q ss_pred CCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCc
Q 010425 175 PAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGA 254 (511)
Q Consensus 175 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~ 254 (511)
......++++++++|||||||.||+|.++|+++.+.+..... .+++.++|++++..|++|..++ ..++.++..|+
T Consensus 175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~ 249 (563)
T 1amu_A 175 LHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN----SLNVTEKDRIGQFASISFDASV-WEMFMALLTGA 249 (563)
T ss_dssp CCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH----TSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTC
T ss_pred CCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCC
Confidence 223456789999999999999999999999999887776655 3458899999999999999888 56788999999
Q ss_pred EEEEccC---CCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCcee
Q 010425 255 AILIMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG 331 (511)
Q Consensus 255 ~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~ 331 (511)
++++.+. .++..+++.|+++++|++.++|+++..+... .++++|.+++||+++++++.++|.+ .++++
T Consensus 250 ~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~ 320 (563)
T 1amu_A 250 SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE---KVTYI 320 (563)
T ss_dssp EEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT---TSEEE
T ss_pred EEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh---CCeEE
Confidence 9999875 6899999999999999999999998766432 3578999999999999999999976 47899
Q ss_pred ccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhc
Q 010425 332 QGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI 411 (511)
Q Consensus 332 ~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~ 411 (511)
+.||+||++..++.+... ........++|+|+++++++|+| +++++++.|+.|||+++|++++.||+++++.+...|
T Consensus 321 ~~YG~TE~~~~~~~~~~~--~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f 397 (563)
T 1amu_A 321 NAYGPTETTICATTWVAT--KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKF 397 (563)
T ss_dssp EEECCGGGSSCSEEEECC--SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHE
T ss_pred EEECcCHHhHhheeeecc--cccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhc
Confidence 999999998766543211 11123556899999999999999 679999999999999999999999999999998887
Q ss_pred CC------CCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEE
Q 010425 412 DK------EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485 (511)
Q Consensus 412 ~~------~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 485 (511)
.. ++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+
T Consensus 398 ~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv 477 (563)
T 1amu_A 398 VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV 477 (563)
T ss_dssp EECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEE
T ss_pred ccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEE
Confidence 42 469999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred eCCCCCCCHHHHHHHHHhcccCCCC
Q 010425 486 RSNGSKITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 486 ~~~~~~~~~~~l~~~l~~~l~~~~~ 510 (511)
+.+ ..+.++|+++++++||+||+
T Consensus 478 ~~~--~~~~~~l~~~l~~~L~~y~~ 500 (563)
T 1amu_A 478 SEK--HIPLEQLRQFSSEELPTYMI 500 (563)
T ss_dssp ESS--CCCHHHHHHHHHHHSCGGGS
T ss_pred eCC--CCCHHHHHHHHHhhCchhhC
Confidence 763 56789999999999999986
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.2e-73 Score=586.25 Aligned_cols=461 Identities=22% Similarity=0.321 Sum_probs=327.3
Q ss_pred CCCCCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhh
Q 010425 21 IPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYI 100 (511)
Q Consensus 21 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~ 100 (511)
.+...++.++|.++++++|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 344579999999999999999999987 789999999999999999999999999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHhhccCCCCCCcCCC
Q 010425 101 GATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKIN 180 (511)
Q Consensus 101 G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (511)
|++++|++|.++.+++.++++++++++++++......+. ....+.+.... ..............
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~----------~~~~~~~~~~~~~~ 212 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT------GTTTLYVEDEA----------ASDAPAGNLATGVG 212 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC------SSEEEECCC-----------------CCCCCCCCC
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc------CCcceeeeccc----------cccccccccCCCCC
Confidence 999999999999999999999999999999876533221 11222221110 01111122234567
Q ss_pred CCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEcc
Q 010425 181 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ 260 (511)
Q Consensus 181 ~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 260 (511)
++++++++|||||||.||+|.++|+++.+.+... ..+++.++++++..+|++|..+. ..++.++..|+++++.+
T Consensus 213 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-----~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~ 286 (570)
T 4gr5_A 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-----DYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQS 286 (570)
T ss_dssp TTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-----CSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECS
T ss_pred CCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-----hhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcC
Confidence 8999999999999999999999999997655431 24568899999999999887665 67788999999999986
Q ss_pred --CCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccccC
Q 010425 261 --KFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTE 338 (511)
Q Consensus 261 --~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~tE 338 (511)
.+++..+++.|+++++|++.++|+++..+++... ..++++|.+++|||+++.+..+++.+.++++++++.||+||
T Consensus 287 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE 363 (570)
T 4gr5_A 287 GQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE 363 (570)
T ss_dssp SSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred CccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhh
Confidence 4689999999999999999999999999987643 35789999999999999999999999998999999999999
Q ss_pred CCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCC-----
Q 010425 339 AGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDK----- 413 (511)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~----- 413 (511)
++.+++.+.... ........++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.+...|..
T Consensus 364 ~~~~~~~~~~~~-~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~ 441 (570)
T 4gr5_A 364 SMGFTTHHAVVA-GDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAG 441 (570)
T ss_dssp GCSCSEEEECCG-GGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCC
T ss_pred heeeeeeeeecc-cccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCC
Confidence 987665432211 12233456799999999999999 67999999999999999999999999999999988843
Q ss_pred ---CCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCC-
Q 010425 414 ---EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNG- 489 (511)
Q Consensus 414 ---~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~- 489 (511)
++||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+..++
T Consensus 442 ~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~ 521 (570)
T 4gr5_A 442 PGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERAD 521 (570)
T ss_dssp SSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------------------
T ss_pred CCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCC
Confidence 3799999999999999999999999999999999999999999999999999999999988889999999998654
Q ss_pred CCCCHHHHHHHHHhcccCCCC
Q 010425 490 SKITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 490 ~~~~~~~l~~~l~~~l~~~~~ 510 (511)
...+.++|+++|+++||.||+
T Consensus 522 ~~~~~~~l~~~l~~~l~~~~~ 542 (570)
T 4gr5_A 522 APPDAAELRRHVAEALPAYMV 542 (570)
T ss_dssp ---------------------
T ss_pred CCcCHHHHHHHHHhhCccccC
Confidence 456788999999999999986
No 22
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=7.5e-72 Score=582.23 Aligned_cols=480 Identities=22% Similarity=0.330 Sum_probs=400.4
Q ss_pred CCHhhHHhhhcccCCCCcEEEeC----CCCCeeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q 010425 25 LPLHTYCFENISQFADRPCIING----PTGDVYTYADVELTSRKVAAGLS-KLGVQKGDVIMLLLQNCPQFVFAFLGASY 99 (511)
Q Consensus 25 ~t~~~~l~~~~~~~p~~~a~~~~----~~~~~~Ty~~l~~~~~~la~~L~-~~gi~~g~~V~i~~~~~~~~~~~~lA~~~ 99 (511)
.++.++|.++++++|+++|+++. ..++++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 35778898999999999999973 23589999999999999999999 99999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccch---------HHHHHHhhhc-C-CeEEEeCCCC--------CCcc
Q 010425 100 IGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN---------DKVRDLSEHH-G-ARIVTIDPPP--------ENCL 160 (511)
Q Consensus 100 ~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~-~-~~~i~~~~~~--------~~~~ 160 (511)
+|++++|+++.++.+++.+++++++++++|+++... ..+.+..... . ..++.++... ....
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 241 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL 241 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence 999999999999999999999999999999987642 2233333222 1 2455554321 1123
Q ss_pred chHHHHhhccCCCCCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHH
Q 010425 161 HFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIY 240 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 240 (511)
.|.++.... ....+....+++++++|+|||||||.||+|+++|.++...+...... .+++.++|++++..|++|..
T Consensus 242 ~~~~~~~~~-~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~ 317 (663)
T 1ry2_A 242 DWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY---TFDTHQEDVFFTAGDIGWIT 317 (663)
T ss_dssp EHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH---HSCCCSSCEEEECSCTTSHH
T ss_pred cHHHHHhhc-CCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHH---hcCCCCCcEEEEcCCcHHhh
Confidence 466553322 22233445678999999999999999999999999987665432221 24578999999999999999
Q ss_pred HhHHHHHHHHHhCcEEEEccC----CCHHHHHHHHHhccCceeecchHHHHHHHhcCC--CCCCCCCcceeeeeeccCCC
Q 010425 241 SLNSVLLCALRVGAAILIMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD--VDKYDMSSIRTVMSGAAPMG 314 (511)
Q Consensus 241 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~~~Ge~l~ 314 (511)
|....++.++..|+++++.+. .++..+++.|+++++|+++++|++++.|.+... ....+++++|.++++||+++
T Consensus 318 g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 397 (663)
T 1ry2_A 318 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIA 397 (663)
T ss_dssp HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCC
T ss_pred hhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCC
Confidence 987778899999999999864 589999999999999999999999999988754 23456899999999999999
Q ss_pred HHHHHHHHHHCC--CCceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCC-CCcceEEE
Q 010425 315 KELEDAVRAKLP--HAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPR-NQAGEICI 391 (511)
Q Consensus 315 ~~~~~~~~~~~~--~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~-g~~Gei~v 391 (511)
+++++++.+.++ ++++++.||+||++..++.... ........+++|+|+++++++|+|++++++++. |+.|||++
T Consensus 398 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i 475 (663)
T 1ry2_A 398 AEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLA--GGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAV 475 (663)
T ss_dssp HHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCT--TTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEeECCccccCeeeccCC--CCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEE
Confidence 999999999883 3899999999999866554311 012244678999999999999999658999988 99999999
Q ss_pred ec--ccchhhccCChhhhhhhcCC--CCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeE
Q 010425 392 RG--AQIMKGYLNDREATETTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAA 467 (511)
Q Consensus 392 ~~--~~~~~gy~~~~~~~~~~~~~--~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~ 467 (511)
+| |+++.|||++++.+...+.. +|||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++
T Consensus 476 ~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~ 555 (663)
T 1ry2_A 476 KAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECA 555 (663)
T ss_dssp SSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEE
T ss_pred ecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEE
Confidence 99 58999999999988877643 789999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCceEEEEEEeCCCCC---C-------CHHHHHHHHHhcccCCCC
Q 010425 468 VVPMKDEAAGEVPVAFVVRSNGSK---I-------TEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 468 v~~~~~~~~~~~~~~~v~~~~~~~---~-------~~~~l~~~l~~~l~~~~~ 510 (511)
|++.+++..++.++++|++.++.. . ..++|+++|+++|++||+
T Consensus 556 Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~ 608 (663)
T 1ry2_A 556 VVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAA 608 (663)
T ss_dssp EECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTS
T ss_pred EEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcC
Confidence 999999888999999999987643 2 257899999999999986
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.1e-71 Score=565.30 Aligned_cols=464 Identities=21% Similarity=0.290 Sum_probs=388.8
Q ss_pred CCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeE
Q 010425 25 LPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104 (511)
Q Consensus 25 ~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 104 (511)
.|+.++|.++++++|+++|+.+. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHh--hccCCCCCCcCCCCC
Q 010425 105 TTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELIT--QADENEIPAVKINPD 182 (511)
Q Consensus 105 v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 182 (511)
+|++|.++.+++.++++.++++++|++......+. ....+ .+.++.. .............++
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 145 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE------GISLV----------SLSEIESAKLAEMPYERTHSVKGD 145 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT------TSEEE----------EHHHHHHHHHHTCCCCCSSCCCTT
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccccc------cCccc----------chhhhhhcccccCCcccCCCCCCC
Confidence 99999999999999999999999999876432111 11111 1222211 111222233456789
Q ss_pred CEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEccCC
Q 010425 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKF 262 (511)
Q Consensus 183 ~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~ 262 (511)
++++++|||||||.||+|.++|+++.+.+.+..... .+++.+.++++...|++|..++ ..++.++..|+++++.+..
T Consensus 146 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~ 222 (521)
T 3l8c_A 146 DNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA--AFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKE 222 (521)
T ss_dssp SEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT--TTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGG
T ss_pred CcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc--ccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHH
Confidence 999999999999999999999999988777665432 2457889999999999998887 6778889999999998764
Q ss_pred ---CHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccccCC
Q 010425 263 ---DIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA 339 (511)
Q Consensus 263 ---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~tE~ 339 (511)
++..+++.|.++++|++.++|+++..+..........++++|.++++|+++++++.+++.+.++++++++.||+||+
T Consensus 223 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 302 (521)
T 3l8c_A 223 LVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEA 302 (521)
T ss_dssp GTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred HhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHH
Confidence 89999999999999999999999999988877667778999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhc---CCCCc
Q 010425 340 GPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI---DKEGW 416 (511)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~---~~~~~ 416 (511)
+..++.+.............++|+|+++++++|+| +++.+++.|+.|||+++|++++.||+++++.+...| +.++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~ 381 (521)
T 3l8c_A 303 TVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPA 381 (521)
T ss_dssp SSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEE
T ss_pred hhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCcee
Confidence 87666542222111233567899999999999999 679999999999999999999999999999999887 56789
Q ss_pred eecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCC-CCCceEEEEEEeCCCCCCC--
Q 010425 417 LHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDE-AAGEVPVAFVVRSNGSKIT-- 493 (511)
Q Consensus 417 ~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~-~~~~~~~~~v~~~~~~~~~-- 493 (511)
|+|||+|+++++|.+++.||++|+||++|++|+|.+||++|.++|+|.+++|++.+++ ..++.++++|++.++....
T Consensus 382 ~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~ 461 (521)
T 3l8c_A 382 YHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFD 461 (521)
T ss_dssp EEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCS
T ss_pred eeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccc
Confidence 9999999999999999999999999999999999999999999999999999987754 4468899999998763321
Q ss_pred -----HHHHHHHHHhcccCCCC
Q 010425 494 -----EDEIKQYISKQVIFFSH 510 (511)
Q Consensus 494 -----~~~l~~~l~~~l~~~~~ 510 (511)
.++|+++++++||+||+
T Consensus 462 ~~~~~~~~l~~~l~~~l~~~~~ 483 (521)
T 3l8c_A 462 RELELTKAIKASVKDHMMSYMM 483 (521)
T ss_dssp SHHHHHHHHHHHSGGGSCGGGS
T ss_pred cchhhHHHHHHHHHhhCccccC
Confidence 57899999999999986
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.2e-71 Score=573.76 Aligned_cols=455 Identities=17% Similarity=0.190 Sum_probs=379.6
Q ss_pred CCCCCCCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHH
Q 010425 19 IYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGAS 98 (511)
Q Consensus 19 ~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~ 98 (511)
.+.+...|+.++|.++++++|+++|+++. ++++||+||+++++++|++|++.|+++|++|+++++|++++++++|||+
T Consensus 21 ~~~~~~~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 21 LDLYAHPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp TSGGGSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 34445579999999999999999999987 7899999999999999999999999999999999999999999999999
Q ss_pred hhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHhhccCCCCCCcC
Q 010425 99 YIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVK 178 (511)
Q Consensus 99 ~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (511)
++|++++|++|.++.+++.+++++++++++++......... ....+.+.. . ...........
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~------~~~~~~~~~----------~--~~~~~~~~~~~ 160 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN------GLPCVPVRH----------L--PAAPASVARPC 160 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT------TSCEEEGGG----------C--CCCCCCSSCCC
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc------CCceeeecc----------C--CcCCccccCCC
Confidence 99999999999999999999999999999997654321110 111111110 0 00111122234
Q ss_pred CCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEE
Q 010425 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (511)
Q Consensus 179 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 258 (511)
..++++++++|||||||.||+|.++|+++.+.+.. . ..+++.++++++...|++|..++ ..++.++..|+++++
T Consensus 161 ~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~----~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~ 234 (620)
T 4dg8_A 161 FAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-Q----SFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVL 234 (620)
T ss_dssp CCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-C----GGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEE
T ss_pred CCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-H----HhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEe
Confidence 56899999999999999999999999999776544 1 14568899999999999999998 668899999999999
Q ss_pred cc--CCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccc
Q 010425 259 MQ--KFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGM 336 (511)
Q Consensus 259 ~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~ 336 (511)
.+ .+++..+++.|+++++|+++++|+++..+.+.. ...++++|.+++|||+++.+..+++.+.+++++++|.||+
T Consensus 235 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 311 (620)
T 4dg8_A 235 NDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGP 311 (620)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred CccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEch
Confidence 64 579999999999999999999999999998753 3457899999999999999999999888889999999999
Q ss_pred cCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCC--
Q 010425 337 TEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE-- 414 (511)
Q Consensus 337 tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~-- 414 (511)
||++.+++.+.. ..........++|+|+++++++|+|++....++.|+.|||+++|+++++||+++++.|...|..+
T Consensus 312 TE~~~~~~~~~~-~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~ 390 (620)
T 4dg8_A 312 TENTTFTCCHVV-TDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPY 390 (620)
T ss_dssp GGGCSCSEEEEC-CTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEE
T ss_pred hhhhhheEEEec-cccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCC
Confidence 999876654322 12223345678999999999999995443448999999999999999999999999999988543
Q ss_pred -----CceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCC
Q 010425 415 -----GWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNG 489 (511)
Q Consensus 415 -----~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 489 (511)
+||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..+..+ ++++...
T Consensus 391 ~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv-~~~~~~~- 468 (620)
T 4dg8_A 391 RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL-CAWTGKA- 468 (620)
T ss_dssp TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEE-EEEEECT-
T ss_pred CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEE-EEEecCh-
Confidence 799999999999999999999999999999999999999999999999999999998877544444 4444332
Q ss_pred CCCCHHHHHHHHHhcccCCCC
Q 010425 490 SKITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 490 ~~~~~~~l~~~l~~~l~~~~~ 510 (511)
+.++++++++||.||+
T Consensus 469 -----~~~~~~l~~~Lp~y~~ 484 (620)
T 4dg8_A 469 -----DASPQALLRQLPTWQR 484 (620)
T ss_dssp -----TCCCHHHHHHSCGGGS
T ss_pred -----HHHHHHHHHhChhhcC
Confidence 2244667788999986
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.1e-71 Score=559.93 Aligned_cols=458 Identities=24% Similarity=0.389 Sum_probs=380.7
Q ss_pred CCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeE
Q 010425 25 LPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104 (511)
Q Consensus 25 ~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 104 (511)
+|+.++|.++++++|+++|+++. ++++||+||+++++++|++|++. +||+|+++++|++++++++|||+++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 75 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI 75 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 47889999999999999999987 78999999999999999999986 89999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCC------CCccch----HHHHhhccCCCC
Q 010425 105 TTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPP------ENCLHF----SELITQADENEI 174 (511)
Q Consensus 105 v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~----~~~~~~~~~~~~ 174 (511)
+|+++.++.+++.++++.++++++|++..................+...... .....+ +...........
T Consensus 76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (501)
T 3ipl_A 76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNI 155 (501)
T ss_dssp EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHH
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcccc
Confidence 9999999999999999999999999987654332111100000000000000 000000 000000000111
Q ss_pred CCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCc
Q 010425 175 PAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGA 254 (511)
Q Consensus 175 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~ 254 (511)
.....+++++++++|||||||.||+|.++|.++.+.+..... .+++.+++++++..|++|.+|+ ..++.++..|+
T Consensus 156 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~ 230 (501)
T 3ipl_A 156 LNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE----SLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGF 230 (501)
T ss_dssp TCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH----HTCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTC
T ss_pred cccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH----hhCCCccCEEEEeCcHHHHHHH-HHHHHHHHcCc
Confidence 233467899999999999999999999999999988877766 3458899999999999999998 55888999999
Q ss_pred EEEEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccc
Q 010425 255 AILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (511)
Q Consensus 255 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Y 334 (511)
++++.+.+++..+++.|+++++|++.++|+++..|++...... .++|.+++|||++++++.+++.+ + ++++++.|
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~Y 305 (501)
T 3ipl_A 231 TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NLPIYNSF 305 (501)
T ss_dssp EEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEE
T ss_pred eEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CCCEeccc
Confidence 9999999999999999999999999999999999998765443 28999999999999999999987 5 89999999
Q ss_pred cccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCC
Q 010425 335 GMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE 414 (511)
Q Consensus 335 g~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~ 414 (511)
|+||++..+..+ .........+++|+|+++++++|+|++ .|+.|||+++|+++++||+++++.+.. + .+
T Consensus 306 G~TE~~~~~~~~---~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~ 374 (501)
T 3ipl_A 306 GMTETCSQFLTA---TPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-EN 374 (501)
T ss_dssp EEGGGTEEEEEE---CHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ET
T ss_pred cccccccceeec---CccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cC
Confidence 999998655433 111223466789999999999999964 467899999999999999999988877 5 68
Q ss_pred CceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCH
Q 010425 415 GWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE 494 (511)
Q Consensus 415 ~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 494 (511)
+||+|||+|+++++|.++++||+||+||++|++|+|.+||+++.++|+|.+++|++.+++..++.++++++.. ...+.
T Consensus 375 g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~ 452 (501)
T 3ipl_A 375 GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISK 452 (501)
T ss_dssp TEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCH
T ss_pred CceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974 45788
Q ss_pred HHHHHHHHhcccCCCC
Q 010425 495 DEIKQYISKQVIFFSH 510 (511)
Q Consensus 495 ~~l~~~l~~~l~~~~~ 510 (511)
++|+++|+++||+||+
T Consensus 453 ~~l~~~l~~~L~~~~~ 468 (501)
T 3ipl_A 453 AQLIAYLSKHLAKYKV 468 (501)
T ss_dssp HHHHHHHHHHSCGGGS
T ss_pred HHHHHHHHhhCccccC
Confidence 9999999999999986
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5.3e-71 Score=559.80 Aligned_cols=450 Identities=23% Similarity=0.340 Sum_probs=383.6
Q ss_pred CCCHhhHHhhhcccCCC-CcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCC
Q 010425 24 HLPLHTYCFENISQFAD-RPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA 102 (511)
Q Consensus 24 ~~t~~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 102 (511)
..|+.+.|.++++++|+ ++|++++ ++++||+||.++++++|++|. .|++|+++++|++++++++|||+++|+
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga 93 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGV 93 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 47899999999999987 9999987 899999999999999999875 388999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHhhccCCCCCCcCCCCC
Q 010425 103 TSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPD 182 (511)
Q Consensus 103 ~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (511)
+++|++|.++.+++.+++++++++++|++...... .. ......+.++.. .....+....+++
T Consensus 94 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--~~--~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 155 (505)
T 3nyq_A 94 AAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--PA--LGALERVDVDVR--------------ARGAVPEDGADDG 155 (505)
T ss_dssp CEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--GG--GTTSEEEECCTT--------------CCCCCCCCCCCTT
T ss_pred EEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--hh--hccccccccccc--------------cccCCCCCCCCCC
Confidence 99999999999999999999999999998652110 00 012233333211 0111223446789
Q ss_pred CEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEccCC
Q 010425 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKF 262 (511)
Q Consensus 183 ~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~ 262 (511)
++++++|||||||.||+|.++|.++.+.+..... .+++.+++++++.+|++|..|+...++.++..|+++++.+.+
T Consensus 156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~ 231 (505)
T 3nyq_A 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALAD----AWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRF 231 (505)
T ss_dssp SEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSC
T ss_pred CeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHH----HhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCC
Confidence 9999999999999999999999999988877766 345889999999999999999877789999999999999999
Q ss_pred CHHHHHHHHHhccCceeecchHHHHHHHhcCCCC---CCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccccCC
Q 010425 263 DIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVD---KYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA 339 (511)
Q Consensus 263 ~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~---~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~tE~ 339 (511)
++..+++.+ ++++|+++++|+++..+++..... ...++++|.+++||+++++++.+++.+.+ ++++++.||+||+
T Consensus 232 ~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 309 (505)
T 3nyq_A 232 STEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTET 309 (505)
T ss_dssp CHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTT
T ss_pred ChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhc
Confidence 999999999 889999999999999998753322 23467889999999999999999999988 8999999999999
Q ss_pred CccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCC---CCcceEEEecccchhhccCChhhhhhhcCCCCc
Q 010425 340 GPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPR---NQAGEICIRGAQIMKGYLNDREATETTIDKEGW 416 (511)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~---g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~ 416 (511)
+..++.. .......+++|+|+++++++|+| +++++++. |+.|||+++|++++.||+++++.+...|..++|
T Consensus 310 ~~~~~~~-----~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 383 (505)
T 3nyq_A 310 LMNTSVR-----ADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGF 383 (505)
T ss_dssp EEEEECC-----TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSC
T ss_pred ccccccC-----CCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCC
Confidence 8655432 22344567899999999999999 57888775 899999999999999999999999999988999
Q ss_pred eecCceEEEcCCCcEEEEccc-CceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCC-CCCCCH
Q 010425 417 LHTGDIGYIDDDDELFIVDRL-KELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSN-GSKITE 494 (511)
Q Consensus 417 ~~TGDl~~~~~~g~~~~~GR~-~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~ 494 (511)
|+|||+|++++||.++++||+ ||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.+ +...+.
T Consensus 384 y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~ 463 (505)
T 3nyq_A 384 FRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPAL 463 (505)
T ss_dssp EEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCH
T ss_pred CccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCH
Confidence 999999999999999999998 589999999999999999999999999999999999999999999999986 356788
Q ss_pred HHHHHHHHhcccCCCC
Q 010425 495 DEIKQYISKQVIFFSH 510 (511)
Q Consensus 495 ~~l~~~l~~~l~~~~~ 510 (511)
++|+++|+++||+||+
T Consensus 464 ~~l~~~l~~~L~~~~~ 479 (505)
T 3nyq_A 464 GTLADHVAARLAPHKR 479 (505)
T ss_dssp HHHHHHHHHHTCGGGS
T ss_pred HHHHHHHHhhCCCCcC
Confidence 9999999999999986
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4e-68 Score=593.54 Aligned_cols=468 Identities=23% Similarity=0.336 Sum_probs=398.5
Q ss_pred CCCCCCCCCCCCHhhHHhhhcccCCCCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHH
Q 010425 15 KLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAF 94 (511)
Q Consensus 15 ~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~ 94 (511)
+.+..+.+. .++.++|.++++++|+++|+++. ++++||+||+++++++|++|++.|+++|++|+|++++++++++++
T Consensus 455 ~~~~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~ 531 (1304)
T 2vsq_A 455 NPPAQAHET-KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGI 531 (1304)
T ss_dssp SCCCCCCCC-CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHH
T ss_pred CCCCCCCCC-CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHH
Confidence 333444454 78999999999999999999987 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHhhccCCCC
Q 010425 95 LGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEI 174 (511)
Q Consensus 95 lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 174 (511)
|||+++|+++||++|.++.+++.++++++++++++++......+..+. .....+.++... ........
T Consensus 532 lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~ 599 (1304)
T 2vsq_A 532 LGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--YTGTTLFIDDQT----------RFEEQASD 599 (1304)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--CCSEEEESSCGG----------GGGSCSSC
T ss_pred HHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--CCCcEEEecccc----------ccccccCC
Confidence 999999999999999999999999999999999999876543321110 012233332210 00111222
Q ss_pred CCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCc
Q 010425 175 PAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGA 254 (511)
Q Consensus 175 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~ 254 (511)
+.....++++++++|||||||.||||.++|+++.+. .... ..+++.++++++...|++|..+. ..++.++..|+
T Consensus 600 ~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~----~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~ 673 (1304)
T 2vsq_A 600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHV----DYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAA 673 (1304)
T ss_dssp CCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSC----CSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTC
T ss_pred CCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHH----HhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCC
Confidence 334567899999999999999999999999999865 2222 25678899999999999888776 67889999999
Q ss_pred EEEEccC---CCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCcee
Q 010425 255 AILIMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG 331 (511)
Q Consensus 255 ~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~ 331 (511)
++++.+. .++..+.+.|+++++|+++++|+++..+.+.. ...++++|.+++|||+++.++.++|.+.+++++++
T Consensus 674 ~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~ 750 (1304)
T 2vsq_A 674 RLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLI 750 (1304)
T ss_dssp EEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEE
T ss_pred EEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEE
Confidence 9999874 68999999999999999999999999998753 22357899999999999999999999988778999
Q ss_pred ccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhc
Q 010425 332 QGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTI 411 (511)
Q Consensus 332 ~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~ 411 (511)
|.||+||++.+++.+.... ........++|+|+++++++|+| +.+++++.|+.|||+|+|+++++||+++++.|.+.|
T Consensus 751 n~YG~TE~~~~~~~~~~~~-~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f 828 (1304)
T 2vsq_A 751 NCYGPTEGTVFATAHVVHD-LPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKF 828 (1304)
T ss_dssp EEECCGGGSSCSEEEECCC-CCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHE
T ss_pred EeEChhHHhHHheeeeccC-ccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhh
Confidence 9999999997766542211 11233456899999999999999 678999999999999999999999999999999888
Q ss_pred C------CCCceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEE
Q 010425 412 D------KEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485 (511)
Q Consensus 412 ~------~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 485 (511)
. +.+||+|||+|++++||.++++||+||+||++|++|+|.|||.+|.++|+|++++|++.+++..+..++++++
T Consensus 829 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv 908 (1304)
T 2vsq_A 829 IENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLV 908 (1304)
T ss_dssp EECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEE
T ss_pred ccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEe
Confidence 4 3469999999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred eCCCCCCCHHHHHHHHHhcccCCCC
Q 010425 486 RSNGSKITEDEIKQYISKQVIFFSH 510 (511)
Q Consensus 486 ~~~~~~~~~~~l~~~l~~~l~~~~~ 510 (511)
..+ ..+.++++++|+++||+||+
T Consensus 909 ~~~--~~~~~~l~~~l~~~Lp~ymv 931 (1304)
T 2vsq_A 909 NRT--QLSAEDVKAHLKKQLPAYMV 931 (1304)
T ss_dssp CSS--SSCHHHHHHHHHHHSCGGGS
T ss_pred CCC--CCCHHHHHHHHHHhChHhhh
Confidence 764 56789999999999999996
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.6e-69 Score=556.55 Aligned_cols=469 Identities=23% Similarity=0.325 Sum_probs=387.4
Q ss_pred CCCCCHhhHHhhhcccCCCCcEEEeCC--CCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q 010425 22 PNHLPLHTYCFENISQFADRPCIINGP--TGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASY 99 (511)
Q Consensus 22 ~~~~t~~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~ 99 (511)
+...|+.++|.++++++|+++|+++.+ .++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 344799999999999999999998642 248999999999999999999999999999999999999999999999999
Q ss_pred hCCeEeccCCCCC---HHHHHHHHHhcCceEEEEcccchHHHHHHh-hhcC--CeEEEeCCCCCCccchHHHHhhccCCC
Q 010425 100 IGATSTTANPFYT---PPEIAKQAIASKAKIIITQAVYNDKVRDLS-EHHG--ARIVTIDPPPENCLHFSELITQADENE 173 (511)
Q Consensus 100 ~G~~~v~~~~~~~---~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 173 (511)
+|++++|++|.+. .+++.++++.+++++++++......+.... .... ..+..+. .+.+ .......
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~ 158 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA--------LESI-ELNRSSS 158 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE--------GGGC-CGGGGGG
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee--------chhc-ccccccc
Confidence 9999999999884 478899999999999999887655543321 1100 0111111 1111 1111122
Q ss_pred CCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhC
Q 010425 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVG 253 (511)
Q Consensus 174 ~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 253 (511)
.+....+++++++++|||||||.||+|.++|.++.+.+..... .+++.+++++++.+|++|.+|+...++.+++.|
T Consensus 159 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G 234 (590)
T 3kxw_A 159 WQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT----SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGG 234 (590)
T ss_dssp CCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHT
T ss_pred CCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH----hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcC
Confidence 2334567899999999999999999999999999998887766 345889999999999999999966688999999
Q ss_pred cEEEEccCC----CHHHHHHHHHhccCceeecchHHHHHHHhcC---CCCCCCCCcceeeeeeccCCCHHHHHHHHHHCC
Q 010425 254 AAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAKSG---DVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLP 326 (511)
Q Consensus 254 ~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~---~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~ 326 (511)
+++++.+++ ++..+++.|+++++|++.++|+++..+.+.. .....+++++|.+++||+++++++.+++.+.|+
T Consensus 235 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~ 314 (590)
T 3kxw_A 235 IQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFK 314 (590)
T ss_dssp CEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHG
T ss_pred ceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHH
Confidence 999998765 8899999999999999999999999888753 234456889999999999999999999999873
Q ss_pred -----CCceeccccccCCCccccccccccC----------------------CCcccCCCcceeccCCceEEEEcCCCCC
Q 010425 327 -----HAKLGQGYGMTEAGPVLSMCLAFAK----------------------EPFEIKSGACGTVVRNAEMKIVDPDTGI 379 (511)
Q Consensus 327 -----~~~i~~~Yg~tE~~~~~~~~~~~~~----------------------~~~~~~~~~~g~p~~~~~~~i~~~~~~~ 379 (511)
+.++++.||+||++.+++....... ........++|+|+++ ++|+|++++.
T Consensus 315 ~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~ 392 (590)
T 3kxw_A 315 EFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLI 392 (590)
T ss_dssp GGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCC
T ss_pred HcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCc
Confidence 4579999999999977664321100 1112234678999998 8899988899
Q ss_pred CCCCCCcceEEEecccchhhccCChhhhhhhcCC------CC--ceecCceEEEcCCCcEEEEcccCceEEeCceeeChH
Q 010425 380 SLPRNQAGEICIRGAQIMKGYLNDREATETTIDK------EG--WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPA 451 (511)
Q Consensus 380 ~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~ 451 (511)
+++.|+.|||+|+|++++.||+++++.+...|.. ++ ||+|||+|+++ +|.++++||+||+||++|++|+|.
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~ 471 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQ 471 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHH
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHH
Confidence 9999999999999999999999999999998853 14 99999999998 999999999999999999999999
Q ss_pred HHHHHH-hcCCCcc--eeEEEeeeCCCCCceEEEEEEeCCCC--CCCHHHHHHHHHhcccC
Q 010425 452 ELEAML-IAHPNIS--DAAVVPMKDEAAGEVPVAFVVRSNGS--KITEDEIKQYISKQVIF 507 (511)
Q Consensus 452 ~ie~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~ 507 (511)
+||++| ..+|.|. +++|++++++. ++.+++++++.++. ..+.+++.++|+++|++
T Consensus 472 eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~ 531 (590)
T 3kxw_A 472 DIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYE 531 (590)
T ss_dssp HHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHH
Confidence 999999 7889998 89999988776 67888888887653 45667888999888875
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=4.6e-67 Score=542.06 Aligned_cols=483 Identities=20% Similarity=0.314 Sum_probs=390.4
Q ss_pred ceEEEcCCCCCCCCCCCCHhhHHhhhcccCCCCcEEEeCC-CCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC
Q 010425 9 EFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGP-TGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNC 87 (511)
Q Consensus 9 ~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~-~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~ 87 (511)
.+++.+.+|.. .+...|+.++|.++++++|+.+++.... .++++||+||+++++++|++|+++|+++||+|+++++|+
T Consensus 6 ~~~~~~~~~~~-~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 84 (576)
T 3gqw_A 6 NKIFTHSLPMR-YADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETS 84 (576)
T ss_dssp --------CCC-CSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSS
T ss_pred hhhhcCCCCcc-cCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Confidence 34555555433 3445799999999999999988886432 238999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCeEeccCCCCC-------HHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCcc
Q 010425 88 PQFVFAFLGASYIGATSTTANPFYT-------PPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCL 160 (511)
Q Consensus 88 ~~~~~~~lA~~~~G~~~v~~~~~~~-------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (511)
+++++++|||+++|++++|+++.++ .+++.++++.+++++++++......+...........+..
T Consensus 85 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-------- 156 (576)
T 3gqw_A 85 SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLS-------- 156 (576)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEE--------
T ss_pred HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecc--------
Confidence 9999999999999999999999998 7899999999999999999888777665544332211111
Q ss_pred chHHHHhhccCCCCCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHH
Q 010425 161 HFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIY 240 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 240 (511)
.... ........+.....++++++++|||||||.||+|.++|+++.+.+...... .+++.++|++++.+|++|.+
T Consensus 157 -~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~ 231 (576)
T 3gqw_A 157 -HAWF-KALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD---GIKLRPGDRCVSWLPFYHDM 231 (576)
T ss_dssp -HHHH-HTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT---TSCCCTTCCEEECCCTTSHH
T ss_pred -hhhh-hcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc---ccCCCCcceEEEcCCccccc
Confidence 0100 111122223344568999999999999999999999999998887766542 24688999999999999999
Q ss_pred HhHHHHHHHHHhCcEEEEccC----CCHHHHHHHHHhccCceeecchHHHHHHHhcCCC---CCCCCCcceeeeeeccCC
Q 010425 241 SLNSVLLCALRVGAAILIMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDV---DKYDMSSIRTVMSGAAPM 313 (511)
Q Consensus 241 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~---~~~~l~~l~~i~~~Ge~l 313 (511)
|+...++.++..|+++++.+. +++..+++.|+++++|+++++|+++..+.+.... ...+++++|.+++|||++
T Consensus 232 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l 311 (576)
T 3gqw_A 232 GLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPI 311 (576)
T ss_dssp HHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCC
T ss_pred cHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccC
Confidence 997778889999999988764 5888999999999999999999999888765432 344578999999999999
Q ss_pred CHHHHHHHHHHCC-----CCceeccccccCCCccccccccccCCC-----------------------cccCCCcceecc
Q 010425 314 GKELEDAVRAKLP-----HAKLGQGYGMTEAGPVLSMCLAFAKEP-----------------------FEIKSGACGTVV 365 (511)
Q Consensus 314 ~~~~~~~~~~~~~-----~~~i~~~Yg~tE~~~~~~~~~~~~~~~-----------------------~~~~~~~~g~p~ 365 (511)
++++.++|.+.|+ ++++++.||+||++.+++.+....... ......++|+|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~ 391 (576)
T 3gqw_A 312 SAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKAL 391 (576)
T ss_dssp CHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEEC
T ss_pred CHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcC
Confidence 9999999999874 688999999999997776542111100 001123789999
Q ss_pred CCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCCCceecCceEEEcCCCcEEEEcccCceEEeCc
Q 010425 366 RNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKG 445 (511)
Q Consensus 366 ~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G 445 (511)
++++++|+| +++++++.|+.|||+++|+++++||+++++.+...+ .++||+|||+|++ +||.++++||+||+||++|
T Consensus 392 ~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G 468 (576)
T 3gqw_A 392 PEHGIEIRN-EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRG 468 (576)
T ss_dssp TTCEEEEEC-TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETT
T ss_pred CCCeEEEEC-CCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECC
Confidence 999999999 789999999999999999999999999998777655 7899999999999 7999999999999999999
Q ss_pred eeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcc-cCCCC
Q 010425 446 FQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQV-IFFSH 510 (511)
Q Consensus 446 ~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l-~~~~~ 510 (511)
++|+|.+||++|.++|+|.++++++..++. +.++++++.....+...+++.+.++++| +.||+
T Consensus 469 ~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 532 (576)
T 3gqw_A 469 RNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGV 532 (576)
T ss_dssp EEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999988887653 4455555555554555678888998888 55653
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.6e-67 Score=542.70 Aligned_cols=468 Identities=18% Similarity=0.203 Sum_probs=317.6
Q ss_pred CCCCCHhhHHhhhcccCCCCcEEEeCCC--------CCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHH
Q 010425 22 PNHLPLHTYCFENISQFADRPCIINGPT--------GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFA 93 (511)
Q Consensus 22 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~--------~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~ 93 (511)
+..+|+.++|.++++++|+++|+++.+. ++++||+||+++++++|++|.+.|+ +||+|+++++|+++++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 4448999999999999999999986421 2799999999999999999999999 799999999999999999
Q ss_pred HHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeCCCCCCccchHHHHhhccCCC
Q 010425 94 FLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENE 173 (511)
Q Consensus 94 ~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 173 (511)
+|||+++|++++|++|.++.+++.+++++++++++|++......... ......+... ...+.+..... ...
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~-~~~ 166 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL---PPETKVLDTK-----NQSFIENLSTQ-DTS 166 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC---CTTCEEEETT-----CHHHHHHHHHS-CCS
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc---Cccceeeccc-----chhhhhhcccc-ccc
Confidence 99999999999999999999999999999999999998654322100 0011222111 11222221211 222
Q ss_pred CCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcC----CCCCcccCCCcEEEEecchhhHHHhHHHHHHH
Q 010425 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG----ENPNLYLHKEDVILCVLPLFHIYSLNSVLLCA 249 (511)
Q Consensus 174 ~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 249 (511)
.......++++++++|||||||.||+|.++|.++.+.+...... ....+.+...+++++..|++|..++ ..++.+
T Consensus 167 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 245 (562)
T 3ite_A 167 DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-GEMFLA 245 (562)
T ss_dssp CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-HHHHHH
T ss_pred ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-HHHHHH
Confidence 22334567899999999999999999999999998776654321 1112346788999999999888877 667788
Q ss_pred HHhCcEEEEccCCC-HHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCC
Q 010425 250 LRVGAAILIMQKFD-IVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHA 328 (511)
Q Consensus 250 l~~G~~~v~~~~~~-~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~ 328 (511)
+..|+++++.+... +..+.+.++++++|++.++|+++..+... ...++++|.+++||+++++++.+++.+.+ ++
T Consensus 246 l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~ 320 (562)
T 3ite_A 246 WRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RV 320 (562)
T ss_dssp HHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SC
T ss_pred HhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-Cc
Confidence 99999999876543 57788999999999999999988876433 34578999999999999999999999876 89
Q ss_pred ceeccccccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhh
Q 010425 329 KLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATE 408 (511)
Q Consensus 329 ~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~ 408 (511)
++++.||+||++..++.... ......+++|+|+++++++++|++.+.+++.|+.|||+++|++++.||+++++.+.
T Consensus 321 ~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~ 396 (562)
T 3ite_A 321 ALVNVYGPTEVTIGCSAGRI----LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG 396 (562)
T ss_dssp EEEEEECCGGGCSCSEEEEC----CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred EEEEeeccchheeeeeeeee----cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccc
Confidence 99999999999876654321 12334578999999999999998889999999999999999999999999998887
Q ss_pred hhcCCCC--ceecCceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHhcC-CCcceeEEEeeeCCCCCceEEEEEE
Q 010425 409 TTIDKEG--WLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAH-PNISDAAVVPMKDEAAGEVPVAFVV 485 (511)
Q Consensus 409 ~~~~~~~--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~ 485 (511)
..+ .++ ||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++ +.+.+++|++.+++..++..+++++
T Consensus 397 ~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 475 (562)
T 3ite_A 397 FCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFV 475 (562)
T ss_dssp EEE-ETTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------------
T ss_pred ccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEE
Confidence 665 344 999999999999999999999999999999999999999999998 8888999998888877777666666
Q ss_pred eCCCCCCC-------------HHHHHHHHHhcccCCCC
Q 010425 486 RSNGSKIT-------------EDEIKQYISKQVIFFSH 510 (511)
Q Consensus 486 ~~~~~~~~-------------~~~l~~~l~~~l~~~~~ 510 (511)
..++.... .++|+++|+++||+||+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~ 513 (562)
T 3ite_A 476 ASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMV 513 (562)
T ss_dssp --------------------------------------
T ss_pred ecccccccccccccccchhhHHHHHHHHHHhhCCcccC
Confidence 55443222 34899999999999985
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=6.3e-61 Score=484.98 Aligned_cols=394 Identities=21% Similarity=0.280 Sum_probs=319.5
Q ss_pred CCCHhhHHhhhcccCCCCcEEEeCC-----CC--CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHH
Q 010425 24 HLPLHTYCFENISQFADRPCIINGP-----TG--DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLG 96 (511)
Q Consensus 24 ~~t~~~~l~~~~~~~p~~~a~~~~~-----~~--~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA 96 (511)
..|+.++|.++++++|+++|+++.+ ++ +++||+||.++++++|++|++.|+ +||+|+++++|++++++++||
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 4899999999999999999998753 12 799999999999999999999996 999999999999999999999
Q ss_pred HHhhCCeEeccCC---CCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhcC----CeEEEeCCCCCCccchHHHHhhc
Q 010425 97 ASYIGATSTTANP---FYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHG----ARIVTIDPPPENCLHFSELITQA 169 (511)
Q Consensus 97 ~~~~G~~~v~~~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~ 169 (511)
|+++|++++|+++ .++.+++.++++.++++++|++......+.+...... ..++.++... ..
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 170 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-----------LD 170 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-----------TT
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-----------cc
Confidence 9999999999999 7788999999999999999999887776655432221 1222222110 11
Q ss_pred cCCCCCCcCCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCC------CcEEEEecchhhHHHhH
Q 010425 170 DENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHK------EDVILCVLPLFHIYSLN 243 (511)
Q Consensus 170 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~g~~ 243 (511)
.....+....+++++++++|||||||.||+|.++|+++.+.+...... +.+.+ ++++++.+|++|.+|+.
T Consensus 171 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 246 (480)
T 3t5a_A 171 APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSG----YFADTDGIPPPNSALVSWLPFYHDMGLV 246 (480)
T ss_dssp CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHH----HCTTTTTCCCTTEEEEECCCTTSTTHHH
T ss_pred cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHH----hccccccCCCCCCeEEEeCCCcCccHHH
Confidence 111223345678999999999999999999999999998887766552 23444 89999999999999987
Q ss_pred HHHHHHHHhCcEEEEccCC----CHHHHHHHHHhccCceeecchHHHHHHHhc----CCCCCCCCCcceeeeeeccCCCH
Q 010425 244 SVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAVAKS----GDVDKYDMSSIRTVMSGAAPMGK 315 (511)
Q Consensus 244 ~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~----~~~~~~~l~~l~~i~~~Ge~l~~ 315 (511)
..++.++..|+++++.++. ++..+++.|+++++| +.++|+++..++.. .......++++|.+++||+++++
T Consensus 247 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~ 325 (480)
T 3t5a_A 247 IGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQA 325 (480)
T ss_dssp HHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCH
T ss_pred HHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCH
Confidence 7889999999999998753 899999999999999 78889888887763 23345668999999999999999
Q ss_pred HHHHHHHHHC-----CCCceeccccccCCCccccccccccCCC--------------------cccCCCcceeccCCceE
Q 010425 316 ELEDAVRAKL-----PHAKLGQGYGMTEAGPVLSMCLAFAKEP--------------------FEIKSGACGTVVRNAEM 370 (511)
Q Consensus 316 ~~~~~~~~~~-----~~~~i~~~Yg~tE~~~~~~~~~~~~~~~--------------------~~~~~~~~g~p~~~~~~ 370 (511)
++.+++.+.| +++.+++.||+||++.+++......... ......++|+|++ +++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~ 404 (480)
T 3t5a_A 326 ATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIV 404 (480)
T ss_dssp HHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEE
T ss_pred HHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEE
Confidence 9999999988 3468999999999997766542211100 0223458999999 999
Q ss_pred EEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcC-----------CCCceecCceEEEcCCCcEEEEcc
Q 010425 371 KIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID-----------KEGWLHTGDIGYIDDDDELFIVDR 436 (511)
Q Consensus 371 ~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGDl~~~~~~g~~~~~GR 436 (511)
+|+|++++++++.|+.|||+|+|++++.||+++++.|.+.|. .++||+|||+|+++ ||.++++||
T Consensus 405 ~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 405 RIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred EEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 999988899999999999999999999999999999999885 56799999999996 999999998
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=6.9e-47 Score=376.70 Aligned_cols=308 Identities=18% Similarity=0.190 Sum_probs=261.3
Q ss_pred CCCC-CCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEE
Q 010425 178 KINP-DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAI 256 (511)
Q Consensus 178 ~~~~-~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 256 (511)
..++ +++++++|||||||.||+|.++|.++.+.+......+. .+++.++++++...|+.|..+.+..++.++..|+++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 159 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY-MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT 159 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH-HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH-HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence 3455 89999999999999999999999999776655433211 235789999999999877666667788899999999
Q ss_pred EEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCC--CCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccc
Q 010425 257 LIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKY--DMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (511)
Q Consensus 257 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Y 334 (511)
++.+..++..+++.|+++++|+++++|+++..|++....... .++++|.+++|||++++++.+++.+.| ++++++.|
T Consensus 160 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 160 VPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp ECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred EeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 999888999999999999999999999999999877543333 368999999999999999999999999 89999999
Q ss_pred cccCCCccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCC
Q 010425 335 GMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE 414 (511)
Q Consensus 335 g~tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~ 414 (511)
|+||+++.+....+ ......+.|.+++.++|+|+++++++++|+.|||+++|.. ...+ +.
T Consensus 239 G~TE~~~~~~~~~~-------~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~ 298 (436)
T 3qov_A 239 GMTEMNGPGVAFEC-------QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PL 298 (436)
T ss_dssp EEGGGTEEEEEEEC-------TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CC
T ss_pred cchhhcCCeeEEec-------CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eE
Confidence 99999544322211 1223467788899999999999999999999999999842 2233 78
Q ss_pred CceecCceEEEcCCC------c---EEEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEE
Q 010425 415 GWLHTGDIGYIDDDD------E---LFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVV 485 (511)
Q Consensus 415 ~~~~TGDl~~~~~~g------~---~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 485 (511)
+||+|||+|+++++| . +++.||.||+||++|++|+|.+||++|.++|+|.++++++.+++..++.++++|+
T Consensus 299 ~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~ 378 (436)
T 3qov_A 299 IRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVE 378 (436)
T ss_dssp CSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 899999999999998 4 6999999999999999999999999999999999999999988888899999999
Q ss_pred eCCCCCCC----HHHHHHHHHhcccCC
Q 010425 486 RSNGSKIT----EDEIKQYISKQVIFF 508 (511)
Q Consensus 486 ~~~~~~~~----~~~l~~~l~~~l~~~ 508 (511)
+. +...+ .+++++.|+++|+.|
T Consensus 379 ~~-~~~~~~~~~~~~l~~~l~~~l~~~ 404 (436)
T 3qov_A 379 LS-DLSTDNYIELEKIRRDIIRQLKDE 404 (436)
T ss_dssp EC-TTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred Ec-CccccchhhHHHHHHHHHHHHHHh
Confidence 98 65444 678999999988887
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=7.5e-46 Score=357.63 Aligned_cols=286 Identities=17% Similarity=0.222 Sum_probs=241.7
Q ss_pred CCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEcc
Q 010425 181 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ 260 (511)
Q Consensus 181 ~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 260 (511)
.+++++|+|||||||.||+|.++|+++.+.+..... .++++++|++++.+|++|.+|+ ..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK----ALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecC
Confidence 478999999999999999999999999988877766 3458899999999999999998 56777888999988875
Q ss_pred CCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccccccCCC
Q 010425 261 KFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340 (511)
Q Consensus 261 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Yg~tE~~ 340 (511)
+. ...++.|+++++|++.++|+++..+++.... ...++++|.+++||+++++++.+++++ + ++++++.||+||++
T Consensus 111 ~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~TEt~ 185 (358)
T 4gs5_A 111 PT--ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISD-L-AMPVYQSYGMTETV 185 (358)
T ss_dssp CC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHT-C-SSCEEEEEECGGGS
T ss_pred cc--ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheecccc-c-CceEEecccccccc
Confidence 42 2346778999999999999999999987543 446889999999999999999999987 4 89999999999998
Q ss_pred ccccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcCCCCceecC
Q 010425 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTG 420 (511)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TG 420 (511)
..++.... .....+.+|.+.|++.+.+.+ .||++++|+.. .++||+||
T Consensus 186 ~~~~~~~~-----~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TG 233 (358)
T 4gs5_A 186 SHVALKAL-----NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTN 233 (358)
T ss_dssp SEEEEEEC-----SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEE
T ss_pred ceeecccc-----cccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecC
Confidence 76664321 233457889999999988754 39999988632 57899999
Q ss_pred ceEEEcCCCcEEEEcccCceEEeCceeeChHHHHHHHh---cCCCcceeEEE-eeeCCCCCceEEEEEEeCCCCCCCHHH
Q 010425 421 DIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLI---AHPNISDAAVV-PMKDEAAGEVPVAFVVRSNGSKITEDE 496 (511)
Q Consensus 421 Dl~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 496 (511)
|+|+++++| ++++||+||+||++|++|+|.+||++|. .||+|.+++|+ +.+++..++.++++|+... .+.+.++
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~~~~~~ 311 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PEALTER 311 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CHHHHHH
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CCcCHHH
Confidence 999999988 7778999999999999999999998774 57999998876 6678888899999888654 3556688
Q ss_pred HHHHHHhcccCCCC
Q 010425 497 IKQYISKQVIFFSH 510 (511)
Q Consensus 497 l~~~l~~~l~~~~~ 510 (511)
|+++|+++||+||+
T Consensus 312 l~~~l~~~L~~~~~ 325 (358)
T 4gs5_A 312 LTAEIRSRVSTYEN 325 (358)
T ss_dssp HHHHHHHHSCGGGS
T ss_pred HHHHHHhhCCCCCC
Confidence 99999999999986
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=6.9e-46 Score=369.59 Aligned_cols=308 Identities=18% Similarity=0.220 Sum_probs=255.9
Q ss_pred CCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecch-hhHHHhHHHHHHHHHhCcEE
Q 010425 178 KINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPL-FHIYSLNSVLLCALRVGAAI 256 (511)
Q Consensus 178 ~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~ 256 (511)
..+++++++++|||||||.||+|.++|.++...+......+. .+++.++|+++...|+ +|..++ ...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR-AAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEE
Confidence 456789999999999999999999999998766544332111 2457889999999998 566665 5678889999999
Q ss_pred EEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCC--CCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccc
Q 010425 257 LIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKY--DMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (511)
Q Consensus 257 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Y 334 (511)
++.+..+++.+++.|+++++|+++++|+++..|++....... .++++|.+++|||++++++.+++++.| ++++++.|
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 242 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIY 242 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecC
Confidence 988888999999999999999999999999999876432222 247899999999999999999999988 89999999
Q ss_pred cccCCCcc-cc-ccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcC
Q 010425 335 GMTEAGPV-LS-MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID 412 (511)
Q Consensus 335 g~tE~~~~-~~-~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~ 412 (511)
|+||+++. +. .| .. .....+.|.+++.++|+|+++++++++|+.|||+++|.. ...+
T Consensus 243 G~TE~~g~~~~~~~--~~------~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t------------~~~~- 301 (437)
T 2y27_A 243 GLSEVMGPGVASEC--VE------TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT------------KEAL- 301 (437)
T ss_dssp EETTTTEEEEEECC--TT------TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS------------CSSS-
T ss_pred CchhhcCCeeEEec--CC------CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC------------cCCc-
Confidence 99998433 22 22 00 111366678999999999888999999999999998732 2334
Q ss_pred CCCceecCceEEEcC-CCcE-----EEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEe
Q 010425 413 KEGWLHTGDIGYIDD-DDEL-----FIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVR 486 (511)
Q Consensus 413 ~~~~~~TGDl~~~~~-~g~~-----~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 486 (511)
+.+||+|||+|++++ +|.+ ++.||.+|+||++|++|+|.+||++|.++|+|.++++++++++..++.++++|++
T Consensus 302 ~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~ 381 (437)
T 2y27_A 302 PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEP 381 (437)
T ss_dssp CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECB
T ss_pred hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEE
Confidence 678999999999998 6985 8999999999999999999999999999999999999988887778999999998
Q ss_pred CCCCC---CCHHHHHHHHHhcccCCC
Q 010425 487 SNGSK---ITEDEIKQYISKQVIFFS 509 (511)
Q Consensus 487 ~~~~~---~~~~~l~~~l~~~l~~~~ 509 (511)
.++.. .+.++++++|+++|++|+
T Consensus 382 ~~~~~~~~~~~~~l~~~l~~~l~~~~ 407 (437)
T 2y27_A 382 CPETAPDTAAIQVAKQALAYDIKSLI 407 (437)
T ss_dssp CTTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchhhhHHHHHHHHHHHHHHhc
Confidence 86643 345789999999998874
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.4e-45 Score=368.05 Aligned_cols=308 Identities=18% Similarity=0.210 Sum_probs=255.0
Q ss_pred CCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecch-hhHHHhHHHHHHHHHhCcEE
Q 010425 178 KINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPL-FHIYSLNSVLLCALRVGAAI 256 (511)
Q Consensus 178 ~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~ 256 (511)
..+++++++++|||||||.||+|.++|.++...+......+. .+++.++++++...|+ +|..++ ...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR-AAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEE
Confidence 456789999999999999999999999998766544332111 2457889999999998 455555 6678889999999
Q ss_pred EEccCCCHHHHHHHHHhccCceeecchHHHHHHHhcCCCCCC--CCCcceeeeeeccCCCHHHHHHHHHHCCCCceeccc
Q 010425 257 LIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKY--DMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGY 334 (511)
Q Consensus 257 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~Y 334 (511)
++.+..+++.+++.|+++++|+++++|+++..|++....... .++++|.+++|||++++++.+++++.| ++++++.|
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 244 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIY 244 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEE
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEecc
Confidence 998888999999999999999999999999999876433332 247899999999999999999999999 89999999
Q ss_pred cccCCCcc--ccccccccCCCcccCCCcceeccCCceEEEEcCCCCCCCCCCCcceEEEecccchhhccCChhhhhhhcC
Q 010425 335 GMTEAGPV--LSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTID 412 (511)
Q Consensus 335 g~tE~~~~--~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~ 412 (511)
|+||+++. ...|. ......+.|.+++.++|+|+++++++++|+.|||+++|.. ...+
T Consensus 245 G~TE~~g~~~~~~~~--------~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t------------~~~~- 303 (443)
T 2y4o_A 245 GLSEVMGPGVACECV--------ETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT------------KEAM- 303 (443)
T ss_dssp EETTTTEEEEEEECT--------TTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS------------CSSS-
T ss_pred CchhhcCCeEEeccC--------CCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC------------cccC-
Confidence 99997433 22221 0111356677899999999888999999999999998732 2334
Q ss_pred CCCceecCceEEEcCC-CcE-----EEEcccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEe
Q 010425 413 KEGWLHTGDIGYIDDD-DEL-----FIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVR 486 (511)
Q Consensus 413 ~~~~~~TGDl~~~~~~-g~~-----~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 486 (511)
+.+||+|||+|+++++ |.+ ++.||.+|+||++|++|+|.+||++|.++|+|.++++++++++..++.++++|++
T Consensus 304 p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~ 383 (443)
T 2y4o_A 304 PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVEL 383 (443)
T ss_dssp CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEE
Confidence 6789999999999999 986 8999999999999999999999999999999999999888877778899999998
Q ss_pred CC--C---CCCCHHHHHHHHHhcccCCC
Q 010425 487 SN--G---SKITEDEIKQYISKQVIFFS 509 (511)
Q Consensus 487 ~~--~---~~~~~~~l~~~l~~~l~~~~ 509 (511)
.+ + ...+.++++++|+++|+.|+
T Consensus 384 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 411 (443)
T 2y4o_A 384 RSEAAASVTDGERAALARELQHRIKTMV 411 (443)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccchhhHHHHHHHHHHHHHHHHh
Confidence 75 2 23455789999999998875
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.98 E-value=2.7e-32 Score=265.29 Aligned_cols=242 Identities=16% Similarity=0.147 Sum_probs=184.9
Q ss_pred CCCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecch-hhHHHhHHHHHHHHHhCcEE
Q 010425 178 KINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPL-FHIYSLNSVLLCALRVGAAI 256 (511)
Q Consensus 178 ~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~ 256 (511)
..+++++++++|||||||.||+|.++|+++...+.+....+. .+++.++++++...|+ +|..|+ ...+.++..|+ +
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~ 163 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ-HRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-M 163 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT-TSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-C
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH-hhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-E
Confidence 357889999999999999999999999999988876544333 4578899999999999 898888 44555688898 6
Q ss_pred EEccCCCHH-----------------------HHHHHHHhccCceeecchHHHHHHHhcCCCCCCCCCcceeeeeeccCC
Q 010425 257 LIMQKFDIV-----------------------KLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPM 313 (511)
Q Consensus 257 v~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~Ge~l 313 (511)
++...+++. .+++.|+++++|++.++|+++..|++........++++|.+++|||++
T Consensus 164 v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l 243 (369)
T 3hgu_A 164 FFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTEL 243 (369)
T ss_dssp EECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCC
T ss_pred EECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccC
Confidence 676677777 888899999999999999999999877433334567899999999999
Q ss_pred CHHHHHHHH-HHCCCCceeccccccCCCccccccccccCCCcccCCCcceec------cCCceEEEEcCCCCCCCCCCCc
Q 010425 314 GKELEDAVR-AKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTV------VRNAEMKIVDPDTGISLPRNQA 386 (511)
Q Consensus 314 ~~~~~~~~~-~~~~~~~i~~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~p------~~~~~~~i~~~~~~~~~~~g~~ 386 (511)
++++++++. +.||++++++.||+||+++++..|. ..++|+| .++++++|+|++++++++.|+.
T Consensus 244 ~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~----------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~ 313 (369)
T 3hgu_A 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLL----------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER 313 (369)
T ss_dssp CHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC----------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE
T ss_pred CHHHHHHHHHHhCCCcEEEcccCchhhhcceeccc----------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc
Confidence 999999999 9998999999999999986654331 1147888 9999999999879999999999
Q ss_pred ceEEEecccchhhccCChhhhhhhcCCCCceecCceEEEcCC--C-------cEEEEcccCceEEeCce
Q 010425 387 GEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDD--D-------ELFIVDRLKELIKFKGF 446 (511)
Q Consensus 387 Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~--g-------~~~~~GR~~d~i~~~G~ 446 (511)
|||++++.... .+ -.+|+|||++...+. | .+..++|.++..++.|.
T Consensus 314 GEl~vt~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 314 GNVIVTHLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred eEEEEEEcCcc------------cc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 99999874321 11 224999999998654 2 24566777777777664
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=99.07 E-value=8.3e-10 Score=110.00 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=95.5
Q ss_pred CCc---ceeeeeeccCCCHHHHHHHHHHCCCCcee-ccccccCCCccccccccccCCCcccCCCccee--ccCCceEEEE
Q 010425 300 MSS---IRTVMSGAAPMGKELEDAVRAKLPHAKLG-QGYGMTEAGPVLSMCLAFAKEPFEIKSGACGT--VVRNAEMKIV 373 (511)
Q Consensus 300 l~~---l~~i~~~Ge~l~~~~~~~~~~~~~~~~i~-~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~--p~~~~~~~i~ 373 (511)
+++ +..++.||- ....+.+++.+++.+++ ..|++||+- +.. . ... ...+...+. .......+.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi-~----~~p-~~~~~~~~~~L~~~~~ffEFi 365 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGI-N----LDP-LCKPEDVSYTFMPNMSYFEFI 365 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEE-C----SCT-TSCGGGCCEEECTTSSEEEEE
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eee-c----cCC-CCCcccCceeecCCcEEEEEE
Confidence 566 444555663 44455565655678877 899999953 221 1 010 001111121 1233566777
Q ss_pred cCCCC--------CCCCCCCcceEEEecccchhhccCChhhhhhhcCCCCceecCceEEEcC----CCcEEEEcccCceE
Q 010425 374 DPDTG--------ISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDD----DDELFIVDRLKELI 441 (511)
Q Consensus 374 ~~~~~--------~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~~~~~GR~~d~i 441 (511)
+.++. ..+..|+.+|+++++.+ |.|+ |++||+.++.. ..++.+.||.++++
T Consensus 366 p~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l 428 (581)
T 4eql_A 366 PMDGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVL 428 (581)
T ss_dssp ECSTTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEE
T ss_pred eccccCCCcEeCHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEE
Confidence 53221 24678999999997652 3333 99999999865 46799999999999
Q ss_pred EeCceeeChHHHHHHHhcCC--------CcceeEEEeeeCCCCCceEEEEEEe
Q 010425 442 KFKGFQVAPAELEAMLIAHP--------NISDAAVVPMKDEAAGEVPVAFVVR 486 (511)
Q Consensus 442 ~~~G~~i~~~~ie~~l~~~~--------~v~~~~v~~~~~~~~~~~~~~~v~~ 486 (511)
.+.|+++...+||+++.+.- .|.|..+.. +.......-+.++++
T Consensus 429 ~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~-~~~~~p~Hy~~~wel 480 (581)
T 4eql_A 429 SIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYA-DTSTFPGHYVVYLEV 480 (581)
T ss_dssp CSSSCCEEHHHHHHHHHHC--------------CEEE-ECSSSSBEEEEECC-
T ss_pred EeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEec-CCCCCCCeEEEEEEE
Confidence 99999999999999998542 255666653 222222344455544
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=99.06 E-value=3.8e-10 Score=112.50 Aligned_cols=178 Identities=14% Similarity=0.111 Sum_probs=107.1
Q ss_pred chHHHHHHHhcCCCC------CCCCCcce---eeeeeccCCCHHHHHHHHHHCCCCcee-ccccccCCCccccccccccC
Q 010425 282 VPPIVLAVAKSGDVD------KYDMSSIR---TVMSGAAPMGKELEDAVRAKLPHAKLG-QGYGMTEAGPVLSMCLAFAK 351 (511)
Q Consensus 282 ~p~~~~~l~~~~~~~------~~~l~~l~---~i~~~Ge~l~~~~~~~~~~~~~~~~i~-~~Yg~tE~~~~~~~~~~~~~ 351 (511)
.|..+..+.+..... ..-+++++ .++.||- ....+.++..+++.+++ ..|++||+- +..-.
T Consensus 277 ~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~----- 347 (609)
T 4b2g_A 277 DPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNL----- 347 (609)
T ss_dssp CHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECS-----
T ss_pred CHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeec-----
Confidence 345555565543322 12356754 4455553 44445555555677777 899999963 22210
Q ss_pred CCcccCCCccee--ccCCceEEEEcCCCC---------------CCCCCCCcceEEEecccchhhccCChhhhhhhcCCC
Q 010425 352 EPFEIKSGACGT--VVRNAEMKIVDPDTG---------------ISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKE 414 (511)
Q Consensus 352 ~~~~~~~~~~g~--p~~~~~~~i~~~~~~---------------~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~ 414 (511)
.+ ...+...+. .......+.++.++. ..+..|+.+||+++.. .|.|+
T Consensus 348 ~p-~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R------------ 411 (609)
T 4b2g_A 348 NP-MSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR------------ 411 (609)
T ss_dssp CT-TSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS------------
T ss_pred CC-CCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh------------
Confidence 00 011111111 223356666653321 2467899999999754 24443
Q ss_pred CceecCceEEEcC----CCcEEEEcccCceEEeCceeeChHHHHHHHhc------CC--CcceeEEEeeeCCCCCceEEE
Q 010425 415 GWLHTGDIGYIDD----DDELFIVDRLKELIKFKGFQVAPAELEAMLIA------HP--NISDAAVVPMKDEAAGEVPVA 482 (511)
Q Consensus 415 ~~~~TGDl~~~~~----~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~------~~--~v~~~~v~~~~~~~~~~~~~~ 482 (511)
|++||++++.. ..++.+.||.++++++.|+++.+.+||+++.. .. .|.|..+.. +.......-+.
T Consensus 412 --Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~-d~~~~p~Hyv~ 488 (609)
T 4b2g_A 412 --YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA-DTKTIPGHYVI 488 (609)
T ss_dssp --EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE-ECSSSSCEEEE
T ss_pred --eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec-CCCCCCCcEEE
Confidence 99999999863 46799999999999999999999999998873 12 355666653 22222334555
Q ss_pred EEEeC
Q 010425 483 FVVRS 487 (511)
Q Consensus 483 ~v~~~ 487 (511)
++++.
T Consensus 489 ~wEl~ 493 (609)
T 4b2g_A 489 YWELL 493 (609)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 56654
No 39
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.02 E-value=4.9e-10 Score=87.14 Aligned_cols=72 Identities=14% Similarity=0.251 Sum_probs=60.5
Q ss_pred cccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCH---HHHHHHHHhccc
Q 010425 435 DRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE---DEIKQYISKQVI 506 (511)
Q Consensus 435 GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~ 506 (511)
.|.||+|+++|.+|+|.+||+++.++|+|.++++++++++..++.+.++|+..++...+. +++.+.++.++.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~ 75 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLK 75 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999887754443 344555555543
No 40
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.96 E-value=1.3e-09 Score=84.51 Aligned_cols=71 Identities=13% Similarity=0.262 Sum_probs=58.0
Q ss_pred cccCceEEeCceeeChHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCC----CHHHHHHHHHhccc
Q 010425 435 DRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKI----TEDEIKQYISKQVI 506 (511)
Q Consensus 435 GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~l~~~l~ 506 (511)
||.+|+|+++|.+|+|.+||+++.++|+|.++++++++++.+++.+++++++ ++... +.+++.+.|++++.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~ 75 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLK 75 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999998888888877788999999998 65322 33456666655543
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.93 E-value=5.7e-09 Score=103.68 Aligned_cols=177 Identities=11% Similarity=0.094 Sum_probs=105.9
Q ss_pred CCcceee--eeeccCCCHHHHHHHHHHCCCCcee-ccccccCCCccccccccccCCCcccCCCccee-cc-CCceEEEEc
Q 010425 300 MSSIRTV--MSGAAPMGKELEDAVRAKLPHAKLG-QGYGMTEAGPVLSMCLAFAKEPFEIKSGACGT-VV-RNAEMKIVD 374 (511)
Q Consensus 300 l~~l~~i--~~~Ge~l~~~~~~~~~~~~~~~~i~-~~Yg~tE~~~~~~~~~~~~~~~~~~~~~~~g~-p~-~~~~~~i~~ 374 (511)
+++++.| +.+|.. ....+.+++.+++.+++ ..|++||+- +.. . ......++..+. .. .....+.++
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi-~-----~~p~~~~~~~~~~L~p~~~ffEFiP 371 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAA-N-----VTPRLSPEEATFAVIPNLGYFEFLP 371 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEE-EEE-C-----CCTTSCTTTCCEEECTTSCEEEEEE
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceecccee-eee-e-----cCCCCCccccceeecCCcEEEEEEe
Confidence 5677633 334422 34445565555678877 899999963 222 1 111111111112 22 235556664
Q ss_pred CCCC----------CCCCCCCcceEEEecccchhhccCChhhhhhhcCCCCceecCceEEEcC----CCcEEEEcccCce
Q 010425 375 PDTG----------ISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDD----DDELFIVDRLKEL 440 (511)
Q Consensus 375 ~~~~----------~~~~~g~~Gei~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~~~~~GR~~d~ 440 (511)
.++. ..+..|+.+|++++... |.|+ |++||+.++.. ..++.+.||.+++
T Consensus 372 ~~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~ 434 (581)
T 4epl_A 372 VSETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLI 434 (581)
T ss_dssp C-------CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred cccccCCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCe
Confidence 3221 35678999999997652 3332 99999999864 2579999999999
Q ss_pred EEeCceeeChHHHHHHHhc------CC--CcceeEEEeeeCCCCCceEEEEEEeCCCCCCCH---HHHHHHHHhcc
Q 010425 441 IKFKGFQVAPAELEAMLIA------HP--NISDAAVVPMKDEAAGEVPVAFVVRSNGSKITE---DEIKQYISKQV 505 (511)
Q Consensus 441 i~~~G~~i~~~~ie~~l~~------~~--~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l 505 (511)
+++.|+++...+|++++.. .. .|.|..+.. +.......-+.++++.. ..+. +++.+.|.+.|
T Consensus 435 l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~-d~~~~p~hyv~~wE~~~--~~~~~~l~~~~~~Ld~~L 507 (581)
T 4epl_A 435 LSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYI-DVSTDPGHYAIFWEISG--ETNEDVLQDCCNCLDRAF 507 (581)
T ss_dssp BCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEE-ECSSSSCEEEEEEEESS--CCCHHHHHHHHHHHHHHC
T ss_pred EEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEec-CCCCCCCcEEEEEeecC--CCCHHHHHHHHHHHHHHh
Confidence 9999999999999998874 22 466777654 22222334555667642 2333 33344465555
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=94.33 E-value=0.39 Score=46.67 Aligned_cols=102 Identities=24% Similarity=0.221 Sum_probs=79.3
Q ss_pred CCCCcEEE---eCCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--hhHHHHHHHHHhhCCeEeccC
Q 010425 38 FADRPCII---NGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNC--PQFVFAFLGASYIGATSTTAN 108 (511)
Q Consensus 38 ~p~~~a~~---~~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~~~ 108 (511)
.++.++.+ .+.+| ..+|.+.+...+..+++.+...|++++|++....+-+ ...+...++++..|+..++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 45666654 33333 6789999999888888888888999999999988853 334455788899999998877
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcccchHHHHH
Q 010425 109 PFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (511)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 140 (511)
+. +.+.+...+++.++++++..+.....+.+
T Consensus 168 ~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 168 GG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 64 78899999999999999988877666544
No 43
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=93.76 E-value=0.37 Score=46.80 Aligned_cols=90 Identities=18% Similarity=0.083 Sum_probs=74.3
Q ss_pred CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--hhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEE
Q 010425 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNC--PQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKII 128 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~v 128 (511)
..+|.+.+...+..++..+...++.++|++....+-+ ...+..+++++..|+..++.++. .++.+...+++.+++++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 6789999999999999888888999999999988743 34555678889999998887654 77889999999999999
Q ss_pred EEcccchHHHHHH
Q 010425 129 ITQAVYNDKVRDL 141 (511)
Q Consensus 129 i~~~~~~~~~~~~ 141 (511)
+..+.....+.+.
T Consensus 183 ~~~P~~~~~l~~~ 195 (436)
T 3qov_A 183 HAIPSYAIRLAEV 195 (436)
T ss_dssp ECCHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9888776665443
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.75 E-value=0.5 Score=46.01 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=79.4
Q ss_pred CCCCcEEE---eCCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--hhHHHHHHHHHhhCCeEeccC
Q 010425 38 FADRPCII---NGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNC--PQFVFAFLGASYIGATSTTAN 108 (511)
Q Consensus 38 ~p~~~a~~---~~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~~~ 108 (511)
.++.++.+ .+.+| ..+|.+.+...+..++..+...|++++|++....+-+ ...+...++++..|+..++++
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 34555543 44444 6789999999888888888888999999999988853 334556788899999998887
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcccchHHHHH
Q 010425 109 PFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (511)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 140 (511)
+. +.+.+...+++.++++++..+.....+.+
T Consensus 170 ~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 170 GG-QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 64 78899999999999999988877665544
No 45
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=86.52 E-value=2.5 Score=39.73 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=63.2
Q ss_pred CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCh--hHHHHHHHHHhhCCeEeccCCCCCHH--------------
Q 010425 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCP--QFVFAFLGASYIGATSTTANPFYTPP-------------- 114 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~~~~~~~~~-------------- 114 (511)
..+|.+.+...+...+..+...|+.++|++..+.|-+. --+...++++..|+.+++.. .++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 67899999988887777777789999999999988622 23344555588898655543 3444
Q ss_pred ---------HHHHHHHhcCceEEEEcccchHHH
Q 010425 115 ---------EIAKQAIASKAKIIITQAVYNDKV 138 (511)
Q Consensus 115 ---------~~~~~l~~~~~~~vi~~~~~~~~~ 138 (511)
.+...+++.++.+++..+.....+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 666688899999998877665544
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=85.91 E-value=7.4 Score=38.22 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=74.6
Q ss_pred cCCCCcEEEeCCCC-------CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCh-hHHHHHHHHHhhCCeEeccC
Q 010425 37 QFADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCP-QFVFAFLGASYIGATSTTAN 108 (511)
Q Consensus 37 ~~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~-~~~~~~lA~~~~G~~~v~~~ 108 (511)
..|+.+|.+...+| ..+|++.+...+...... .++.++|++...+|-.- -.+..+++++..|+..+..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 35778887633332 678999988777665543 57899999998887653 23344678888999988776
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcccchHHHHH
Q 010425 109 PFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (511)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 140 (511)
+ .+++.+...+++.++++++..+.....+.+
T Consensus 237 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 267 (501)
T 3ipl_A 237 K-FNAEQILTMIKNERITHISLVPQTLNWLMQ 267 (501)
T ss_dssp S-CCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence 4 688999999999999999998776665543
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=84.04 E-value=5.2 Score=39.96 Aligned_cols=98 Identities=9% Similarity=0.034 Sum_probs=71.8
Q ss_pred CCcEEEeCCCC-------CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChh--HHHHHHHHHhhCCeEeccCCC
Q 010425 40 DRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQ--FVFAFLGASYIGATSTTANPF 110 (511)
Q Consensus 40 ~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v~~~~~ 110 (511)
+.+|.+...+| ..+|.+.+...+......+...+++++|++...+|-.-. +...+++++ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 77777643333 679999998776665544433678899998888776533 333456777 999888776 4
Q ss_pred CCHHHHHHHHHhcCceEEEEcccchHHHH
Q 010425 111 YTPPEIAKQAIASKAKIIITQAVYNDKVR 139 (511)
Q Consensus 111 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 139 (511)
.+++.+...+++.++++++..+.....+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 68899999999999999998877665553
No 48
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=83.39 E-value=11 Score=37.32 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=73.4
Q ss_pred CCCCcEEEeCCCC-------CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChh--HHH-HHHHHHhhCCeEecc
Q 010425 38 FADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQ--FVF-AFLGASYIGATSTTA 107 (511)
Q Consensus 38 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~--~~~-~~lA~~~~G~~~v~~ 107 (511)
.|+.+|.+...+| ..+|.+.+...+......+ +++++|++...+|-.-. +.. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh---CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4677777633232 7899999888776665543 67889998888876533 332 478889999998876
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcccchHHHHH
Q 010425 108 NPFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (511)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 140 (511)
+. .+++.+...+++.++++++..+.....+.+
T Consensus 257 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 288 (539)
T 1mdb_A 257 PS-PSPDDAFPLIEREKVTITALVPPLAMVWMD 288 (539)
T ss_dssp SS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHh
Confidence 54 678899999999999999988777665544
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=82.93 E-value=10 Score=37.72 Aligned_cols=99 Identities=15% Similarity=0.062 Sum_probs=73.4
Q ss_pred CCCCcEEEeCCCC-------CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHH---HHHHHHhhCCeEecc
Q 010425 38 FADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVF---AFLGASYIGATSTTA 107 (511)
Q Consensus 38 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~---~~lA~~~~G~~~v~~ 107 (511)
.|+.+|++...+| ..+|.+.+...+...+.. .++.++|++...+|-...+-. .+++++..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4677777633332 789999998877766554 478999999988875543322 478888899988876
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcccchHHHHH
Q 010425 108 NPFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (511)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 140 (511)
+. ..+..+...+++.+++.+...+.....+.+
T Consensus 266 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 266 PN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp SS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 54 578888899999999999998876665543
No 50
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=82.10 E-value=5.7 Score=39.69 Aligned_cols=105 Identities=8% Similarity=0.056 Sum_probs=75.7
Q ss_pred CCCCEEEEecCCCC-CCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEE
Q 010425 180 NPDDVVALPYSSGT-TGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (511)
Q Consensus 180 ~~~~~~~i~~TSGt-TG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 258 (511)
.|+.++++....+. .+. .-.+|+..+...+......+. ..++.++|++...++-.. .+...+++++..|+..+.
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vp 106 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGIS-RKGVRKGEHVGVCIPNSI--DYVMTIYALWRVAATPVP 106 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCH--HHHHHHHHHHHhCCEEEc
Confidence 45777777653221 111 246788888777776665554 357899999999988543 344678889999999988
Q ss_pred cc-CCCHHHHHHHHHhccCceeecchHHHHHH
Q 010425 259 MQ-KFDIVKLMELVQKYKVTVAPFVPPIVLAV 289 (511)
Q Consensus 259 ~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l 289 (511)
++ ....+.+...+++.+++.++..+.....+
T Consensus 107 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 107 INPMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp CCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 76 46888899999999999998887655443
No 51
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=81.81 E-value=3.9 Score=40.71 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=74.0
Q ss_pred CCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEE
Q 010425 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (511)
Q Consensus 179 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 258 (511)
..++.++++....| -.+|+..+...+......+. ..++.++|++...++-.. .++..+++++..|+..+.
T Consensus 34 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~la~~~~Gav~vp 103 (536)
T 3ni2_A 34 NHSSKPCLINGANG-------DVYTYADVELTARRVASGLN-KIGIQQGDVIMLFLPSSP--EFVLAFLGASHRGAIITA 103 (536)
T ss_dssp GSTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEE
T ss_pred cCCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCEEec
Confidence 35677887653322 35788888777776666554 357899999999988643 344778889999999888
Q ss_pred ccC-CCHHHHHHHHHhccCceeecchHHHH
Q 010425 259 MQK-FDIVKLMELVQKYKVTVAPFVPPIVL 287 (511)
Q Consensus 259 ~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~ 287 (511)
.+. ...+++...+++.++..++..+....
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 133 (536)
T 3ni2_A 104 ANPFSTPAELAKHAKASRAKLLITQACYYE 133 (536)
T ss_dssp CCTTCCHHHHHHHHHHHTEEEEEECGGGTH
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEChHHHH
Confidence 764 68888999999999999988765443
No 52
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=80.75 E-value=11 Score=37.17 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=70.1
Q ss_pred CCCCcEEE---eCCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHH--HHHHHHHhhCCeEeccC
Q 010425 38 FADRPCII---NGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFV--FAFLGASYIGATSTTAN 108 (511)
Q Consensus 38 ~p~~~a~~---~~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~--~~~lA~~~~G~~~v~~~ 108 (511)
.|+.+|.+ .+.+| ..+|.+.+...+...+.. .++.++|++...+|-.-.+- ..+++++ .|+..+..+
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~ 243 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 243 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC
Confidence 35677765 33222 789999998877666554 47899999998888754332 2345555 888887765
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcccchHHHHH
Q 010425 109 PFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (511)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 140 (511)
...++.+...+++.+++++...+.....+..
T Consensus 244 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 244 -QFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp -SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 5788999999999999999998877665544
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=79.89 E-value=4.6 Score=39.86 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEc
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 259 (511)
.|+.++++.. ...+|++.+...+......+. ..++.+++++...++-.. .+...+++++..|+..+.+
T Consensus 19 ~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMVD---------GVRLTHRDYLARAERLASGLL-RDGVHTGDRVAILSQNCS--EMIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCH--HHHHHHHHHHHhCCEEEec
Confidence 4677777651 236889998877777666554 357899999999988543 3446788899999999987
Q ss_pred cC-CCHHHHHHHHHhccCceeecchHHHHH
Q 010425 260 QK-FDIVKLMELVQKYKVTVAPFVPPIVLA 288 (511)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~ 288 (511)
+. ...+.+...+++.++..++..+.....
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 64 688899999999999999988765544
No 54
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=78.10 E-value=6.3 Score=38.42 Aligned_cols=107 Identities=13% Similarity=0.035 Sum_probs=77.8
Q ss_pred CCCCEEEEecCC--CCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEE
Q 010425 180 NPDDVVALPYSS--GTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAIL 257 (511)
Q Consensus 180 ~~~~~~~i~~TS--GtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 257 (511)
.|+.+|++.... +.+| ....+|+..+...+......+.. .+. ++|++...++-.. .++..+++++..|+..+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~v 110 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGL--EYVVAFLGALQAGRIAV 110 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSH--HHHHHHHHHHHTTCEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcH--HHHHHHHHHHHhCcEEE
Confidence 567788776542 2222 22568999998888877776663 455 8999998888543 34467888999999988
Q ss_pred EccC----CCHHHHHHHHHhccCceeecchHHHHHHHhc
Q 010425 258 IMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKS 292 (511)
Q Consensus 258 ~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~ 292 (511)
.++. ...+++...+++.++..++..+.....+...
T Consensus 111 pl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 111 PLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp EECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred eeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 8753 4567889999999999999988776665543
No 55
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=77.30 E-value=9.3 Score=38.09 Aligned_cols=101 Identities=8% Similarity=-0.017 Sum_probs=72.1
Q ss_pred CCCcEEEeCCCC-------CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChh-HHHHHHHHHhhCCeEeccCCC
Q 010425 39 ADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQ-FVFAFLGASYIGATSTTANPF 110 (511)
Q Consensus 39 p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~~~~~ 110 (511)
++.+|.+...+| ..+|.+.+..........+...++.+++++...+|-.-. .+...++++..|+..+..+ .
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~ 267 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R 267 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence 356666532222 789999887776555444444678899999888876532 3445677788999988775 4
Q ss_pred CCHHHHHHHHHhcCceEEEEcccchHHHHH
Q 010425 111 YTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (511)
Q Consensus 111 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 140 (511)
.+++.+...+++.++++++..+.....+.+
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAK 297 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCeEEEeCcHHHHHHHh
Confidence 688999999999999999998776665543
No 56
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=77.08 E-value=8 Score=38.04 Aligned_cols=100 Identities=21% Similarity=0.247 Sum_probs=71.3
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEc
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 259 (511)
.|+.++++.... ...+|+..+...+......+. ..++.++|++...++-.. .+...+++++..|+..+..
T Consensus 15 ~p~~~a~~~~~~-------~~~~Ty~el~~~~~~~A~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVPAR-------GLRLTHAELRARVEAVAARLH-ADGLRPQQRVAVVAPNSA--DVVIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEETTT-------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEcCC-------CceeEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCH--HHHHHHHHHHHhCcEEEec
Confidence 456677765321 235888888777766665544 357899999999988543 3446788899999998877
Q ss_pred c-CCCHHHHHHHHHhccCceeec--chHHHHHH
Q 010425 260 Q-KFDIVKLMELVQKYKVTVAPF--VPPIVLAV 289 (511)
Q Consensus 260 ~-~~~~~~~~~~i~~~~~t~l~~--~p~~~~~l 289 (511)
+ ...++++...+++.+++.++. .+.....+
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 6 467889999999999999887 55544443
No 57
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=75.76 E-value=20 Score=36.34 Aligned_cols=99 Identities=13% Similarity=0.002 Sum_probs=72.9
Q ss_pred CCCCcEEEe---CCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCh--hHHH-HHHHHHhhCCeEecc
Q 010425 38 FADRPCIIN---GPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCP--QFVF-AFLGASYIGATSTTA 107 (511)
Q Consensus 38 ~p~~~a~~~---~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~--~~~~-~~lA~~~~G~~~v~~ 107 (511)
.|+.+|.+. +.+| ..+|.+.+...+......+ ++.+++++....|-.. .... .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 457777753 2222 7899999988777666554 6789999999988543 3332 478888899988876
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcccchHHHHH
Q 010425 108 NPFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (511)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 140 (511)
+. .....+...+++.+++++...+.....+.+
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQ 290 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHH
Confidence 64 577888889999999999998877665544
No 58
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=75.11 E-value=6.6 Score=39.54 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=72.8
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEc
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 259 (511)
.|+.+|++..... | ....+|...+...+......+. ..++.++|++...++-.. .++..+++++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~-~~Gv~~Gd~V~l~~~~~~--e~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFV-KHGIGKGDYVMLTLKSRY--DFWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECTTCT--HHHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCEEEEeC
Confidence 5788888765321 2 1246788888777766665554 457899999999988543 3446788899999999887
Q ss_pred c-CCCHHHHHHHHHhccCceeecch
Q 010425 260 Q-KFDIVKLMELVQKYKVTVAPFVP 283 (511)
Q Consensus 260 ~-~~~~~~~~~~i~~~~~t~l~~~p 283 (511)
. .+..+.+...+++.++..++..+
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred CccCCHHHHHHHHHhcCCCEEEEec
Confidence 5 46888999999999999988754
No 59
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=74.91 E-value=10 Score=38.85 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=72.5
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEc
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 259 (511)
.++.+|++.... .+|. ...+|+..+...+..+...+....++.++|++...+|... .+...+++++..|+..+.+
T Consensus 95 ~pd~~Al~~~~~-~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~--e~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP--EAIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCEEEee
Confidence 467788875432 1221 2358888887777766655431357899999999998644 3446788899999998887
Q ss_pred c-CCCHHHHHHHHHhccCceeecch
Q 010425 260 Q-KFDIVKLMELVQKYKVTVAPFVP 283 (511)
Q Consensus 260 ~-~~~~~~~~~~i~~~~~t~l~~~p 283 (511)
. .+.++.+...|++.++.+++...
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcc
Confidence 5 57899999999999999988754
No 60
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=74.83 E-value=6.7 Score=39.05 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=73.9
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEc
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 259 (511)
.++.++++....+ ....+|+..+...+......+. ..++.++|++...++-.. .+...+++++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLR-ALGVGVGDRVATLGFNHF--RHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEEec
Confidence 3556666643211 1235788888777766665544 357899999999988543 3446788899999999887
Q ss_pred c-CCCHHHHHHHHHhccCceeecchHHHHHH
Q 010425 260 Q-KFDIVKLMELVQKYKVTVAPFVPPIVLAV 289 (511)
Q Consensus 260 ~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l 289 (511)
+ ....+++...+++.++..++..+.....+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 6 46888999999999999999887665443
No 61
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=74.78 E-value=9.7 Score=38.31 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=72.9
Q ss_pred cCCCCcEEEeCCCC-------CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHH--HHHHHHHhhCCeEecc
Q 010425 37 QFADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFV--FAFLGASYIGATSTTA 107 (511)
Q Consensus 37 ~~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~--~~~lA~~~~G~~~v~~ 107 (511)
..|+.+|++...+| ..+|.+.+...+...... .++.++|++...+|-.-.+- ..+++++..|+..+..
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 35677787633332 779999998887766554 57889999999888765433 3378889999998887
Q ss_pred CCCC---CHHHHHHHHHhcCceEEEEcccchHHHH
Q 010425 108 NPFY---TPPEIAKQAIASKAKIIITQAVYNDKVR 139 (511)
Q Consensus 108 ~~~~---~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 139 (511)
++.. .+..+...+++.+++++...+.....+.
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHH
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHH
Confidence 7542 5677888999999998887666555443
No 62
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=74.00 E-value=10 Score=37.96 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=71.8
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEc
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 259 (511)
.|+.++++.. .-.+|+..+...+......+. ..++.++|++...++-.. .+...+++++..|+..+..
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFI-EKGIGKDTLVGIMMEKSI--DLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEEe
Confidence 4567777641 125788888776666655444 347899999999988543 3446788899999999887
Q ss_pred cC-CCHHHHHHHHHhccCceeecchHHHHH
Q 010425 260 QK-FDIVKLMELVQKYKVTVAPFVPPIVLA 288 (511)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~ 288 (511)
+. ...+.+...+++.++..++..+.....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 64 678889999999999999888765443
No 63
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=73.97 E-value=8.8 Score=37.85 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=71.0
Q ss_pred CCCCcEEEe---CCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChh-HHHHHHHHHhhCCeEeccCC
Q 010425 38 FADRPCIIN---GPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQ-FVFAFLGASYIGATSTTANP 109 (511)
Q Consensus 38 ~p~~~a~~~---~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~~~~ 109 (511)
.++.+|++. +.+| ..+|++.+...+...... .+++++|++...+|-+.. .+..+++++..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 456777653 3222 779999998776655443 578999999998886542 34557888999999888876
Q ss_pred C--CCHHHHHHHHHhcCceEEEEcccchHHH
Q 010425 110 F--YTPPEIAKQAIASKAKIIITQAVYNDKV 138 (511)
Q Consensus 110 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 138 (511)
. ..++.+...+++.++++++..+.....+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4678888999999999998877665443
No 64
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=73.14 E-value=19 Score=36.06 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=69.1
Q ss_pred CCCCcEEEeCCCC-------CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHH--HHHHHHHhhCCeEeccC
Q 010425 38 FADRPCIINGPTG-------DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFV--FAFLGASYIGATSTTAN 108 (511)
Q Consensus 38 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~--~~~lA~~~~G~~~v~~~ 108 (511)
.|+.+|.+...+| ..+|++ +........ ....+++++|++....+-+..+- ..+++.+..|+..+..+
T Consensus 204 ~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 204 GSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp BTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 4677777633222 678988 443211111 14468899999988887764433 35678888999888776
Q ss_pred C-CCCHHHHHHHHHhcCceEEEEcccchHHHH
Q 010425 109 P-FYTPPEIAKQAIASKAKIIITQAVYNDKVR 139 (511)
Q Consensus 109 ~-~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 139 (511)
. ..++..+...+++.++++++..+.....+.
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 4 678899999999999999998876655543
No 65
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=72.87 E-value=7 Score=38.78 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEc
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 259 (511)
.++.++++.. | ..+|+..+...+......+. ..++.++|++...++-.. .+...+++++..|+..+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALR-TLGVHPEERILLVMLDTV--ALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSST--HHHHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcH--HHHHHHHHHHHcCceEEec
Confidence 4566777642 1 25788888777766665444 457889999999988544 3446788899999998887
Q ss_pred cC-CCHHHHHHHHHhccCceeecchHHHH
Q 010425 260 QK-FDIVKLMELVQKYKVTVAPFVPPIVL 287 (511)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~p~~~~ 287 (511)
+. ..++++...+++.++..++..+....
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 132 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQ 132 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhh
Confidence 64 68889999999999999888765543
No 66
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=72.85 E-value=14 Score=36.32 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=71.9
Q ss_pred CCCCcEEE---eCCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChh-HHHHHHHHHhhCCeEeccCC
Q 010425 38 FADRPCII---NGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQ-FVFAFLGASYIGATSTTANP 109 (511)
Q Consensus 38 ~p~~~a~~---~~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~~~~ 109 (511)
.++.+|.+ .+.+| ..+|.+.+...+..+... .++.++|++....|-+.. .+..+++++..|+..+..+.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 45667765 33333 789999998776655543 578899999998887643 34457888999999887765
Q ss_pred C--CCHHHHHHHHHhcCceEEEEcccchHHH
Q 010425 110 F--YTPPEIAKQAIASKAKIIITQAVYNDKV 138 (511)
Q Consensus 110 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 138 (511)
. ..++.+...+++.++++++..+.....+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4678888999999999999887765544
No 67
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=72.14 E-value=12 Score=26.09 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=35.1
Q ss_pred hHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 010425 450 PAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVIFF 508 (511)
Q Consensus 450 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 508 (511)
..++++.+.++|+|.+|..+. + ..-.++.|... +.+++.+.+.++|...
T Consensus 15 ~~~~~~~l~~~peV~e~~~vt----G-~~D~ll~v~~~-----d~~~l~~~i~~~l~~~ 63 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVY----G-EYDLIVKVETD-----TLKDLDQFITEKIRKM 63 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECB----S-SCSEEEEEEES-----SHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHhCCCCeeEEEEEc----c-cCCEEEEEEEC-----CHHHHHHHHHHHhccC
Confidence 478899999999999999984 2 23345555544 5678888887666543
No 68
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=71.30 E-value=11 Score=38.49 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEc
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 259 (511)
.++.+|++.... .+|. ...+|+..+...+..+...+. ..++.++|++...+|-.. .+...+++++..|+..+.+
T Consensus 89 ~pd~~Al~~~~~-~~~~--~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~--e~vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWEGD-DTSQ--SKHISYRELHRDVCRFANTLL-DLGIKKGDVVAIYMPMVP--EAAVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEECS-STTC--EEEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC-CCCc--eeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCH--HHHHHHHHHHHcCcEEEec
Confidence 357778775422 1222 235888888777776665554 457899999999998654 3346788899999998887
Q ss_pred c-CCCHHHHHHHHHhccCceeecch
Q 010425 260 Q-KFDIVKLMELVQKYKVTVAPFVP 283 (511)
Q Consensus 260 ~-~~~~~~~~~~i~~~~~t~l~~~p 283 (511)
. .+.++.+...+++.++.+++...
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 5 57889999999999998887653
No 69
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=70.67 E-value=13 Score=34.68 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=63.4
Q ss_pred CCCcEEE---eCCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCh-hHHHHHHHHHhhCCeEeccCCC
Q 010425 39 ADRPCII---NGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCP-QFVFAFLGASYIGATSTTANPF 110 (511)
Q Consensus 39 p~~~a~~---~~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~-~~~~~~lA~~~~G~~~v~~~~~ 110 (511)
+|.+|++ .+.+| ..+|++.+...+..++.. .+++++|++...+|-.- -.+..++..+..|+..+..++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 4556654 55554 789999998877665544 57899999998887653 2344456667788887777664
Q ss_pred CCHHHHHHHHHhcCceEEEEcccchHHH
Q 010425 111 YTPPEIAKQAIASKAKIIITQAVYNDKV 138 (511)
Q Consensus 111 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 138 (511)
.. ....+++.+++.+...+.....+
T Consensus 113 ~~---~~~~i~~~~~t~~~~~P~~l~~l 137 (358)
T 4gs5_A 113 AN---PLAGLDHADFDFVAMVPMQLQSI 137 (358)
T ss_dssp SC---TTTTCSSCCCSEEEECHHHHHHH
T ss_pred cc---HHHHHHHhCCeEEEcChHHHHHh
Confidence 32 23456678888888776655444
No 70
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=69.86 E-value=13 Score=37.25 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEc
Q 010425 180 NPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259 (511)
Q Consensus 180 ~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 259 (511)
.|+.++++.. .-.+|++.+...+......+. ..++.++|++...++-.. .+...+++++..|+..+.+
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLV-GLGVAPGTLVGVHLERGF--DMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCH--HHHHHHHHHHHHCCEEEEc
Confidence 4677777642 125888888777776665554 357899999999988544 3446788999999998887
Q ss_pred cC-CCHHHHHHHHHhccCceeecchH
Q 010425 260 QK-FDIVKLMELVQKYKVTVAPFVPP 284 (511)
Q Consensus 260 ~~-~~~~~~~~~i~~~~~t~l~~~p~ 284 (511)
+. ...+++...+++.++..++....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRP 181 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred CCCChHHHHHHHHHhcCCCEEEecch
Confidence 64 68889999999999999887654
No 71
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=67.88 E-value=10 Score=37.21 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=63.8
Q ss_pred hhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEccC-CCHHHHHHHHHhccCcee
Q 010425 201 MLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK-FDIVKLMELVQKYKVTVA 279 (511)
Q Consensus 201 ~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l 279 (511)
.+|+..+...+......+. ..++.++|++...++-.. .+...+++++..|+..+..+. ...+++...+++.++..+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEKSV--EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCH--HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 4788888777766665544 347899999999988543 344678899999999988764 688889999999999999
Q ss_pred ecchH
Q 010425 280 PFVPP 284 (511)
Q Consensus 280 ~~~p~ 284 (511)
+..+.
T Consensus 105 i~~~~ 109 (503)
T 4fuq_A 105 VCDPS 109 (503)
T ss_dssp EECGG
T ss_pred EECch
Confidence 87764
No 72
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=66.59 E-value=13 Score=40.29 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=73.3
Q ss_pred CCCCCEEEEecCCCCCCCchhhhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEE
Q 010425 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI 258 (511)
Q Consensus 179 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 258 (511)
..|+.++++...+| ..+|+..+...+......+. ..++.++|++...++-.. .++..+++++..|+..+.
T Consensus 73 ~~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~ns~--e~~v~~lA~~~~Ga~~vp 142 (979)
T 3tsy_A 73 EFATKPCLINGPTG-------HVYTYSDVHVISRQIAANFH-KLGVNQNDVVMLLLPNCP--EFVLSFLAASFRGATATA 142 (979)
T ss_dssp GTTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECSSCH--HHHHHHHHHHHHTCEEEE
T ss_pred hCCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEeCCCH--HHHHHHHHHHHcCCEEEe
Confidence 35778888753322 35788888777776665554 357899999999998543 444778899999999888
Q ss_pred cc-CCCHHHHHHHHHhccCceeecchHH
Q 010425 259 MQ-KFDIVKLMELVQKYKVTVAPFVPPI 285 (511)
Q Consensus 259 ~~-~~~~~~~~~~i~~~~~t~l~~~p~~ 285 (511)
++ .+.++.+...+++.++.+++..+..
T Consensus 143 l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 143 ANPFFTPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp ECTTSCHHHHHHHHHHHTEEEEEECSTT
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEChHH
Confidence 75 5788999999999999999877644
No 73
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=66.19 E-value=18 Score=24.93 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=33.9
Q ss_pred hHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcccC
Q 010425 450 PAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVIF 507 (511)
Q Consensus 450 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~ 507 (511)
..++.+.+.++|+|.+|..+. ++.-.++.+... +.+++.+.+.++|..
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-----G~~d~l~~v~~~-----d~~~l~~~~~~~l~~ 62 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVY-----GVYDIVVKVEAD-----SMDKLKDFVTNTIRK 62 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECS-----SSCSEEEEEECS-----SHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhCCCCeEEEEEEe-----ccCCEEEEEEEC-----CHHHHHHHHHHHhcC
Confidence 378889999999999999884 223355555544 567777777766654
No 74
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=66.05 E-value=23 Score=32.65 Aligned_cols=65 Identities=18% Similarity=0.015 Sum_probs=49.0
Q ss_pred HHHCC-CCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEccc
Q 010425 69 LSKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (511)
Q Consensus 69 L~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 133 (511)
..+.| +++|+.|.+.+..+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34455 488888655666677777778888888998777766666666678889999999999764
No 75
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=65.76 E-value=38 Score=33.15 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=71.2
Q ss_pred cCCCCcEEE---eCCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCh--hHHHHHHHHHhhCCeEecc
Q 010425 37 QFADRPCII---NGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCP--QFVFAFLGASYIGATSTTA 107 (511)
Q Consensus 37 ~~p~~~a~~---~~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~~ 107 (511)
..|+.+|.+ .+.+| ..+|.+.+...+..+...+ ++.++|++...+|-.- .++..+++.+..|+..+..
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 346677775 33333 7899999998888776665 6788999888777532 2334578889999998877
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcccchHHHHH
Q 010425 108 NPFYTPPEIAKQAIASKAKIIITQAVYNDKVRD 140 (511)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 140 (511)
+ ....+.+...+ +.+++.++..+.....+.+
T Consensus 229 ~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 229 G-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp S-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 5 46777777777 7789999888776665544
No 76
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=63.30 E-value=32 Score=34.78 Aligned_cols=113 Identities=18% Similarity=0.080 Sum_probs=77.8
Q ss_pred CCCCcEEE---eCCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChh-HHHHHHHHHhhCCeEeccC-
Q 010425 38 FADRPCII---NGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQ-FVFAFLGASYIGATSTTAN- 108 (511)
Q Consensus 38 ~p~~~a~~---~~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~~~- 108 (511)
.|+.+|.+ .+.+| ..+|.+.+...+.. ....++.+++++...++-+.+ .+..+++.+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 36777775 33333 78999887554322 234578899999999887654 3445788888999887764
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcccchHHHHHHhhhc--CCeEEEeCC
Q 010425 109 PFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHH--GARIVTIDP 154 (511)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~i~~~~ 154 (511)
...+++.+...+++.+++.++..+.....+.+..... .++.+....
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gG 285 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGG 285 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEES
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEe
Confidence 3468899999999999999998887766655432221 455555543
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=59.62 E-value=80 Score=26.71 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=56.5
Q ss_pred CcEEEEecch-hhHHHhHHHHHHHHHhCcEEEEcc-CCCHHHHHHHHHhccCceeec--c----hHH--HHHHHhcCCCC
Q 010425 227 EDVILCVLPL-FHIYSLNSVLLCALRVGAAILIMQ-KFDIVKLMELVQKYKVTVAPF--V----PPI--VLAVAKSGDVD 296 (511)
Q Consensus 227 ~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~--~----p~~--~~~l~~~~~~~ 296 (511)
+.+++...+- .|..|........-..|..++... ...++.+.+.+.+++++++.. + ++. +..+.+..+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 3444444442 577777555555666787877765 468999999999999998776 2 221 23333322221
Q ss_pred CCCCCcceeeeeeccCCCHHHHHHH
Q 010425 297 KYDMSSIRTVMSGAAPMGKELEDAV 321 (511)
Q Consensus 297 ~~~l~~l~~i~~~Ge~l~~~~~~~~ 321 (511)
. +..--.++.||.+++++..+.+
T Consensus 173 ~--~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 K--LRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp T--CGGGSEEEEESSSCCHHHHHHH
T ss_pred C--CCCCCEEEEECCCCCHHHHHHh
Confidence 1 1111247889999998765543
No 78
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=59.29 E-value=28 Score=32.14 Aligned_cols=92 Identities=15% Similarity=0.043 Sum_probs=61.8
Q ss_pred CcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHH
Q 010425 41 RPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQA 120 (511)
Q Consensus 41 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l 120 (511)
++++-...-..+-|+++= -..+.+.+...+--+++|.+..+....+-.-..+.++|.+.|..++.+=|...+..-...+
T Consensus 51 ~IylK~E~lnptGSfK~R-gA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~ 129 (344)
T 3vc3_A 51 YVAVKQEMMQPTASIADR-PAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTM 129 (344)
T ss_dssp EEEEEEGGGSTTSBTTHH-HHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHH
T ss_pred EEEEEecCCCCCCCcHHH-HHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHH
Confidence 444443322234455432 1223334444433367887666777778888888899999999888777877777778899
Q ss_pred HhcCceEEEEccc
Q 010425 121 IASKAKIIITQAV 133 (511)
Q Consensus 121 ~~~~~~~vi~~~~ 133 (511)
+..++++++++..
T Consensus 130 ~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 130 RAFGAELILTDPA 142 (344)
T ss_dssp HHTTCEEEEECGG
T ss_pred HHcCCEEEEECCC
Confidence 9999999999754
No 79
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=56.12 E-value=14 Score=36.44 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=60.9
Q ss_pred hhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEcc-CCCHHHHHHHHHhccCcee
Q 010425 201 MLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQ-KFDIVKLMELVQKYKVTVA 279 (511)
Q Consensus 201 ~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l 279 (511)
.+|+..+...+......+. ..++.+++++...++-.. .++..+++++..|+..+.++ ....+.+...+++.+++.+
T Consensus 29 ~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~i 105 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFID-SLALLAKSPVLVFGAQTY--DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLI 105 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTCCCTTCCEEEEECSSH--HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEE
T ss_pred eecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEE
Confidence 4788888777766665444 357889999888887543 44467888999999888765 5788999999999999988
Q ss_pred ecch
Q 010425 280 PFVP 283 (511)
Q Consensus 280 ~~~p 283 (511)
+...
T Consensus 106 i~~~ 109 (521)
T 3l8c_A 106 IAIE 109 (521)
T ss_dssp EESS
T ss_pred EecC
Confidence 7653
No 80
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=55.12 E-value=21 Score=35.63 Aligned_cols=86 Identities=12% Similarity=0.034 Sum_probs=64.9
Q ss_pred hhhchHHHHHHHHhhhcCCCCCcccCCCcEEEEecchhhHHHhHHHHHHHHHhCcEEEEccC-CC-------HHHHHHHH
Q 010425 200 VMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQK-FD-------IVKLMELV 271 (511)
Q Consensus 200 v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~-------~~~~~~~i 271 (511)
-.+|++.+...+......+. ..++.+++++...++-.. .++..+++++..|+..+..+. .. .+.+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLL-SLNLKKGDRVALIAETSS--EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTCCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 36788888777776665554 357899999999998544 444678889999999888753 33 57788889
Q ss_pred HhccCceeecchHHHHH
Q 010425 272 QKYKVTVAPFVPPIVLA 288 (511)
Q Consensus 272 ~~~~~t~l~~~p~~~~~ 288 (511)
++.++..++........
T Consensus 125 ~~~~~~~ii~~~~~~~~ 141 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPL 141 (576)
T ss_dssp HHHCCSEEEECGGGHHH
T ss_pred HhcCCCEEEecHHHHHH
Confidence 99999998887665443
No 81
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=50.33 E-value=24 Score=25.07 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=31.6
Q ss_pred hHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhccc
Q 010425 450 PAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVI 506 (511)
Q Consensus 450 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~ 506 (511)
..++.+.+.++|+|.+|..+. +..-.++.+... +.+++.+.+.++|.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-----G~~D~ll~v~~~-----d~~~l~~~l~~~l~ 61 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVT-----GPYDLVALVRLK-----DVEELDDVVTQGIL 61 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEES-----SSSSEEEEEEES-----SGGGHHHHCCCCCT
T ss_pred HHHHHHHHhcCCCeEEEEEee-----cCCCEEEEEEEC-----CHHHHHHHHHHhcc
Confidence 478889999999999999984 223355555544 34566666655544
No 82
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=44.73 E-value=56 Score=32.41 Aligned_cols=86 Identities=8% Similarity=-0.056 Sum_probs=62.8
Q ss_pred CeeeHHHHHHHHHHHHHHHH-----HCCCCCCCEEEEEcCCChh-HHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcC
Q 010425 51 DVYTYADVELTSRKVAAGLS-----KLGVQKGDVIMLLLQNCPQ-FVFAFLGASYIGATSTTANPFYTPPEIAKQAIASK 124 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~la~~L~-----~~gi~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~ 124 (511)
..+|.+.+...+..++..+. ...+...+++....+.... .+..++.++..|+..+..+.....+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 67999999998888877764 2456778888877776654 33446777888988877654434466778889999
Q ss_pred ceEEEEcccchH
Q 010425 125 AKIIITQAVYND 136 (511)
Q Consensus 125 ~~~vi~~~~~~~ 136 (511)
++++...+....
T Consensus 273 ~t~~~~~P~~l~ 284 (562)
T 3ite_A 273 VTHAGIVPSLLD 284 (562)
T ss_dssp CCEEEECHHHHH
T ss_pred CCEEEcCHHHHh
Confidence 999988766433
No 83
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=44.51 E-value=98 Score=27.88 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=44.8
Q ss_pred HHHCCC-CCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEccc
Q 010425 69 LSKLGV-QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (511)
Q Consensus 69 L~~~gi-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 133 (511)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 334453 66776655 55555566666777899988777666655566677888999999999863
No 84
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=44.27 E-value=87 Score=28.38 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=45.1
Q ss_pred HHCC-CCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEccc
Q 010425 70 SKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (511)
Q Consensus 70 ~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 133 (511)
.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3445 456643444455666666777778899998777666655566677889999999999854
No 85
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=43.64 E-value=86 Score=29.90 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=47.8
Q ss_pred HHCC-CCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcc
Q 010425 70 SKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (511)
Q Consensus 70 ~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~ 132 (511)
.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 3455 46775555556667777777888999999877776766667777888999999999974
No 86
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=41.46 E-value=1.8e+02 Score=25.90 Aligned_cols=63 Identities=17% Similarity=0.092 Sum_probs=43.7
Q ss_pred HHCC-CCCCC--EEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEccc
Q 010425 70 SKLG-VQKGD--VIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (511)
Q Consensus 70 ~~~g-i~~g~--~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 133 (511)
.+.| +++|+ .|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 52 ~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 52 EERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3344 46666 4444 55566666666778899988777666555566677888999999999864
No 87
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=41.11 E-value=1e+02 Score=27.64 Aligned_cols=63 Identities=19% Similarity=0.094 Sum_probs=43.8
Q ss_pred HHCCC-CCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEccc
Q 010425 70 SKLGV-QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (511)
Q Consensus 70 ~~~gi-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 133 (511)
.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 ~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 57 EKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34453 66666655 55555566666777889988777666555556677789999999999864
No 88
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=40.49 E-value=1.7e+02 Score=26.64 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=51.2
Q ss_pred CeeeHHHHHHHHHHHH---HHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceE
Q 010425 51 DVYTYADVELTSRKVA---AGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKI 127 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~la---~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ 127 (511)
..+++.+......... +.+...++++|++|+|+...+.-.+++++|....|+.++-++. +++ -..+++..++..
T Consensus 135 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~-r~~~~~~~Ga~~ 211 (348)
T 4eez_A 135 DGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQD-KLNLAKKIGADV 211 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHH-HHHHHHHTTCSE
T ss_pred CCCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHH-HhhhhhhcCCeE
Confidence 3466666544333322 3345568999999999988777777777777666776666554 233 345677788888
Q ss_pred EEEcc
Q 010425 128 IITQA 132 (511)
Q Consensus 128 vi~~~ 132 (511)
++...
T Consensus 212 ~i~~~ 216 (348)
T 4eez_A 212 TINSG 216 (348)
T ss_dssp EEEC-
T ss_pred EEeCC
Confidence 77643
No 89
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=36.90 E-value=67 Score=29.59 Aligned_cols=58 Identities=12% Similarity=-0.014 Sum_probs=41.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccch
Q 010425 77 GDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN 135 (511)
Q Consensus 77 g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~ 135 (511)
.+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++....
T Consensus 76 ~~~vv~-~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~ 133 (346)
T 3l6b_A 76 PKAVVT-HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE 133 (346)
T ss_dssp CSCEEE-ECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEE-eCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 344433 3456666666788899998877776666666678888999999999986543
No 90
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=36.56 E-value=1.2e+02 Score=27.71 Aligned_cols=59 Identities=17% Similarity=0.058 Sum_probs=42.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEccc
Q 010425 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (511)
Q Consensus 74 i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 133 (511)
+++|+.|+.... +---..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 75 ~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 75 LKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp SCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 467776655543 55555566777789987777666655566677889999999999863
No 91
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=36.11 E-value=79 Score=35.34 Aligned_cols=113 Identities=14% Similarity=0.242 Sum_probs=77.3
Q ss_pred CCCCcEEE---eCCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhH-HHHHHHHHhhCCeEeccCC
Q 010425 38 FADRPCII---NGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF-VFAFLGASYIGATSTTANP 109 (511)
Q Consensus 38 ~p~~~a~~---~~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~~~~ 109 (511)
.|+.+|.+ .+.+| ..+|.+.+... .......++.++|++..+.+-+.+. +.-+++.+..|+..+..++
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 46777775 33333 77999887643 1122336788999999888877654 3457788889999888776
Q ss_pred C--CCHHHHHHHHHhcCceEEEEcccchHHHHHHhhh--cCCeEEEeCC
Q 010425 110 F--YTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEH--HGARIVTIDP 154 (511)
Q Consensus 110 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~i~~~~ 154 (511)
. .+++.+...+++.+++++...+.....+.+.... ..++.+.+..
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gG 729 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGG 729 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEES
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEec
Confidence 3 5788999999999999999887766655432111 1455555543
No 92
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=35.40 E-value=1.7e+02 Score=26.05 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=43.8
Q ss_pred HCC-CCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcc
Q 010425 71 KLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (511)
Q Consensus 71 ~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~ 132 (511)
+.| +++|+.|.... .+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 54 ~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 54 KRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 344 36677666654 45555566677789999877776665556667788999999999985
No 93
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=34.98 E-value=2.1e+02 Score=26.14 Aligned_cols=54 Identities=9% Similarity=0.166 Sum_probs=28.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCC-------CCHHHHHHHHHhcCceEEEE
Q 010425 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF-------YTPPEIAKQAIASKAKIIIT 130 (511)
Q Consensus 74 i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~-------~~~~~~~~~l~~~~~~~vi~ 130 (511)
+++||.|.+..+....+ ..++...|+.++.++.. ...+.+...++..++++++.
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 34667666555444332 22344566666555542 45666766666445555543
No 94
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=34.06 E-value=1.4e+02 Score=27.00 Aligned_cols=63 Identities=19% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHCC-CCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEccc
Q 010425 70 SKLG-VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (511)
Q Consensus 70 ~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 133 (511)
.+.| +++++.|+.. ..+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 65 ~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 65 EADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3444 4677776554 4566666777778888988777766666666678889999999999853
No 95
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=33.19 E-value=97 Score=28.76 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=46.0
Q ss_pred HHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCC-----CCHHHHHHHHHhcC--ceEEEEccc-----ch
Q 010425 68 GLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF-----YTPPEIAKQAIASK--AKIIITQAV-----YN 135 (511)
Q Consensus 68 ~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~-----~~~~~~~~~l~~~~--~~~vi~~~~-----~~ 135 (511)
.|...++++||.|.+-.+....+ .-++...|+.++.++.+ .+.+.+...+...+ .++|+.... ..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~~~G~~~~~ 145 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYATFGSWMNL 145 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBCGGGBCCCC
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEECCCCCccCH
Confidence 34445678999988877665543 33456778877666532 36778887774333 666664321 23
Q ss_pred HHHHHHhhhcCCeEE
Q 010425 136 DKVRDLSEHHGARIV 150 (511)
Q Consensus 136 ~~~~~~~~~~~~~~i 150 (511)
+.+.++.. .+..++
T Consensus 146 ~~i~~la~-~~~~vi 159 (377)
T 3ju7_A 146 EEYEELEK-KGVPVV 159 (377)
T ss_dssp HHHHHHHH-TTCCBE
T ss_pred HHHHHHHh-cCCEEE
Confidence 44555555 444433
No 96
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=32.38 E-value=2.5e+02 Score=25.10 Aligned_cols=91 Identities=14% Similarity=0.000 Sum_probs=54.8
Q ss_pred CCcEEEeCCCCCeeeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHH
Q 010425 40 DRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGV-QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAK 118 (511)
Q Consensus 40 ~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~gi-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~ 118 (511)
.++.+-..+.+-+-|+++--. ...+. .+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-..
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a-~~~i~-~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 102 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIG-ANMVW-QAEKDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKR 102 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHH-HHHHH-HHHHTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCChHHHHH-HHHHH-HHHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 445554433333445554332 12222 2334454 56665544 44566666666777899987776666555566677
Q ss_pred HHHhcCceEEEEccc
Q 010425 119 QAIASKAKIIITQAV 133 (511)
Q Consensus 119 ~l~~~~~~~vi~~~~ 133 (511)
.++..++++++++..
T Consensus 103 ~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 103 LLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 889999999999864
No 97
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=31.88 E-value=97 Score=21.13 Aligned_cols=45 Identities=16% Similarity=-0.042 Sum_probs=30.0
Q ss_pred CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCC
Q 010425 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA 102 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 102 (511)
..+.+.+|.+ .+.+.+..++..|.++|..+.....+...+...|.
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 4555666544 33344567788888888888777666666677775
No 98
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=31.70 E-value=2.6e+02 Score=24.87 Aligned_cols=51 Identities=12% Similarity=-0.069 Sum_probs=36.9
Q ss_pred EcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEccc
Q 010425 83 LLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (511)
Q Consensus 83 ~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 133 (511)
....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 70 ~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 70 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp EECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 444455555666777899987776666555566677889999999998764
No 99
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=31.60 E-value=1.4e+02 Score=27.34 Aligned_cols=77 Identities=12% Similarity=0.026 Sum_probs=48.1
Q ss_pred CeeeHHHHHHHHHH---HHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCC-eEeccCCCCCHHHHHHHHHhcCce
Q 010425 51 DVYTYADVELTSRK---VAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAK 126 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~---la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~~~~~~~~~~~~~~l~~~~~~ 126 (511)
..+++.+....... ..+.+...++++|++|+|+.....-.+++++|- ..|+ .++.++.+ + +-..++++.+++
T Consensus 138 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~--~-~~~~~~~~lGa~ 213 (352)
T 3fpc_A 138 KEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGSR--K-HCCDIALEYGAT 213 (352)
T ss_dssp TTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECCC--H-HHHHHHHHHTCC
T ss_pred CCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECCC--H-HHHHHHHHhCCc
Confidence 34566655332111 123355678999999999986556777777764 5687 45555542 3 334566778888
Q ss_pred EEEEc
Q 010425 127 IIITQ 131 (511)
Q Consensus 127 ~vi~~ 131 (511)
.++..
T Consensus 214 ~vi~~ 218 (352)
T 3fpc_A 214 DIINY 218 (352)
T ss_dssp EEECG
T ss_pred eEEcC
Confidence 77754
No 100
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=31.28 E-value=77 Score=28.33 Aligned_cols=74 Identities=11% Similarity=0.164 Sum_probs=47.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHH---HHHHhcCceEEEEcccchHHH-HHHhhhcCCeEEEeCC
Q 010425 79 VIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIA---KQAIASKAKIIITQAVYNDKV-RDLSEHHGARIVTIDP 154 (511)
Q Consensus 79 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~---~~l~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~i~~~~ 154 (511)
+..+..-+...+++-.|++-..|..- ....-++..+. ..+++.++++||+.+...... ..+.+..+.+++.+++
T Consensus 191 ~~~v~~H~af~Yf~~~yGl~~~~~~~--~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld~ 268 (291)
T 1pq4_A 191 RKFIVFHPSWAYFARDYNLVQIPIEV--EGQEPSAQELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLDP 268 (291)
T ss_dssp CEEEESSCCCHHHHHHTTCEEEESCB--TTBCCCHHHHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEECT
T ss_pred CEEEEECCchHHHHHHCCCEEeeccc--CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEcC
Confidence 45666777888888888776555432 23334565555 556678999999987765544 4444555777766653
No 101
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=31.05 E-value=1.4e+02 Score=29.37 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=44.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcc
Q 010425 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (511)
Q Consensus 74 i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~ 132 (511)
+++|+.|+. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 110 ~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 110 LKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp CCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 577887755 4556666666778888899887776766666777888999999999975
No 102
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=30.78 E-value=2.1e+02 Score=25.91 Aligned_cols=78 Identities=8% Similarity=-0.060 Sum_probs=50.3
Q ss_pred eeHHHHHHHHHH---HHHHHHHC--CCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceE
Q 010425 53 YTYADVELTSRK---VAAGLSKL--GVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKI 127 (511)
Q Consensus 53 ~Ty~~l~~~~~~---la~~L~~~--gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ 127 (511)
+++.+....... .-+.|.+. ++++|++|+|......-.+++++|-..-|..++.++. +.+ -..++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~-~~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDD-RLALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHH-HHHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHH-HHHHHHHcCCCE
Confidence 677665533322 22334443 7899999999987666778888886664666665543 333 344667788888
Q ss_pred EEEccc
Q 010425 128 IITQAV 133 (511)
Q Consensus 128 vi~~~~ 133 (511)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 776543
No 103
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=30.74 E-value=95 Score=27.64 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=45.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhhCCeEeccCC--CCCHH---HHHHHHHhcCceEEEEcccchHHH-HHHhhhcCCeEE
Q 010425 77 GDVIMLLLQNCPQFVFAFLGASYIGATSTTANP--FYTPP---EIAKQAIASKAKIIITQAVYNDKV-RDLSEHHGARIV 150 (511)
Q Consensus 77 g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~--~~~~~---~~~~~l~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~i 150 (511)
+..+ +...+...+++-.|++-..|. .-+++ .-++. ++...+++.++++||+.+...... ..+.++.+.+++
T Consensus 179 ~~~~-v~~H~af~Yf~~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~ 255 (286)
T 3gi1_A 179 SKTF-VTQHTAFSYLAKRFGLKQLGI--SGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVK 255 (286)
T ss_dssp CCEE-EEEESCCHHHHHHTTCEEEEE--ECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEE
T ss_pred CCEE-EEECCchHHHHHHCCCeEeec--cccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEE
Confidence 4444 555668888877777655542 22332 23454 455566778999999998765544 444555567766
Q ss_pred EeC
Q 010425 151 TID 153 (511)
Q Consensus 151 ~~~ 153 (511)
.++
T Consensus 256 ~l~ 258 (286)
T 3gi1_A 256 TLS 258 (286)
T ss_dssp ECC
T ss_pred Eec
Confidence 664
No 104
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=29.70 E-value=88 Score=29.03 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=43.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchH
Q 010425 77 GDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYND 136 (511)
Q Consensus 77 g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~ 136 (511)
|....+.+..+-.-..+.++|.+.|..++.+-|...+......++..++++++++....+
T Consensus 92 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 151 (364)
T 4h27_A 92 GCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDE 151 (364)
T ss_dssp TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 333444555566667777788899988777767666677788889999999999865443
No 105
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=29.36 E-value=3.3e+02 Score=24.89 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=42.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCC-----CCHHHHHHHHHhcCceEEEE-c-c---cchHHHHHHh
Q 010425 73 GVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF-----YTPPEIAKQAIASKAKIIIT-Q-A---VYNDKVRDLS 142 (511)
Q Consensus 73 gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~-----~~~~~~~~~l~~~~~~~vi~-~-~---~~~~~~~~~~ 142 (511)
++++|+.|.+..+....... ++...|+.++.++.+ ...+.+...+.. +.++++. + . ...+.+.++.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~g~~~~~~~i~~l~ 151 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTVNLLGNPNNFDEINKII 151 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEECGGGCCCCHHHHHHHH
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEECCccChhhHHHHHHHH
Confidence 67889988887776554433 445678766555433 256777766654 4555555 3 1 2334444554
Q ss_pred hhcCCeEEEeCC
Q 010425 143 EHHGARIVTIDP 154 (511)
Q Consensus 143 ~~~~~~~i~~~~ 154 (511)
...+.. +.+|.
T Consensus 152 ~~~~~~-li~D~ 162 (390)
T 3b8x_A 152 GGRDII-LLEDN 162 (390)
T ss_dssp TTSCCE-EEEEC
T ss_pred HHcCCE-EEEEC
Confidence 444433 33443
No 106
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=29.33 E-value=1.6e+02 Score=26.77 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.7
Q ss_pred CCCCCCCEEEEEcCCC
Q 010425 72 LGVQKGDVIMLLLQNC 87 (511)
Q Consensus 72 ~gi~~g~~V~i~~~~~ 87 (511)
..+++||+|+|++|.+
T Consensus 7 ~~L~~GD~I~ivaPSs 22 (327)
T 4h1h_A 7 AKLKQGDEIRIIAPSR 22 (327)
T ss_dssp CCCCTTCEEEEECSSS
T ss_pred CCCCCCCEEEEEeCCC
Confidence 3578999999999985
No 107
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=28.94 E-value=3.5e+02 Score=25.55 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=40.3
Q ss_pred EEEcCCChhHHH-HHHHHHhhCCeEeccCCCCCHH--HHHHHHHhcCceEEEEcccchHHHHHHhhhcCCeEEEeC
Q 010425 81 MLLLQNCPQFVF-AFLGASYIGATSTTANPFYTPP--EIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTID 153 (511)
Q Consensus 81 ~i~~~~~~~~~~-~~lA~~~~G~~~v~~~~~~~~~--~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~i~~~ 153 (511)
+++..++.+.+. ++.++++.|-.++..++.+... .+...+...+++++.++....+.+.+.... ..+.+.+.
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~-~t~~v~~e 174 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDE-TTKLLFLE 174 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCT-TEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCC-CCeEEEEE
Confidence 455556665543 3445566676666666666442 223366778888888876655544443322 33455543
No 108
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=28.89 E-value=1.6e+02 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.5
Q ss_pred CCCCCCCEEEEEcCCCh
Q 010425 72 LGVQKGDVIMLLLQNCP 88 (511)
Q Consensus 72 ~gi~~g~~V~i~~~~~~ 88 (511)
..+++||+|+|++|.+.
T Consensus 8 ~~L~~GD~I~ivaPSs~ 24 (336)
T 3sr3_A 8 KSLKYGDTIGIYSPSSP 24 (336)
T ss_dssp CCCCTTCEEEEECSSSC
T ss_pred CCCCCCCEEEEEeCCCC
Confidence 35789999999999884
No 109
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=28.49 E-value=1.5e+02 Score=23.07 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=33.8
Q ss_pred hHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcccC
Q 010425 450 PAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVIF 507 (511)
Q Consensus 450 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~ 507 (511)
..++.+.+.++|+|.+|..+. +..-..+.|... +.+++.+.+.++|..
T Consensus 82 ~~~~~~~l~~~peV~~~~~vt-----G~~d~~~~v~~~-----d~~~l~~~l~~~l~~ 129 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTT-----GHYSIFIKVMCR-----SIDALQHVLINKIQT 129 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEES-----SSCSEEEEEEES-----CHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCcCeEEEEEEe-----cccCEEEEEEEC-----CHHHHHHHHHHHhhc
Confidence 478889999999999999883 233355555554 567777777665543
No 110
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=28.18 E-value=3.5e+02 Score=24.82 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCC----CCHHHHHHHHHhc--CceEEEEcc-----cchHH
Q 010425 69 LSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF----YTPPEIAKQAIAS--KAKIIITQA-----VYNDK 137 (511)
Q Consensus 69 L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~----~~~~~~~~~l~~~--~~~~vi~~~-----~~~~~ 137 (511)
+...++++||.|.+..+....+.. ++...|+.++.++.+ ...+.+...+... +.++|+... ...+.
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~ 140 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDE 140 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHH
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEECCCCChhhHHH
Confidence 344457889998888777665433 334478776666542 3567888877763 455555432 22344
Q ss_pred HHHHhhhcCCeEEEeCC
Q 010425 138 VRDLSEHHGARIVTIDP 154 (511)
Q Consensus 138 ~~~~~~~~~~~~i~~~~ 154 (511)
+.++....+.. +.+|.
T Consensus 141 i~~l~~~~~~~-li~De 156 (394)
T 1o69_A 141 IVEICKENDIV-LIEDA 156 (394)
T ss_dssp HHHHHHHTTCE-EEEEC
T ss_pred HHHHHHHcCCE-EEEEC
Confidence 55555444443 34443
No 111
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=28.01 E-value=1.7e+02 Score=26.10 Aligned_cols=92 Identities=11% Similarity=0.154 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHC--CCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCC--CCHHH---HHHHHHhcCceEEE
Q 010425 57 DVELTSRKVAAGLSKL--GVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF--YTPPE---IAKQAIASKAKIII 129 (511)
Q Consensus 57 ~l~~~~~~la~~L~~~--gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~--~~~~~---~~~~l~~~~~~~vi 129 (511)
++.++.+.+-..+++. .++.+.+..+...+...+++-.|++-..+. .-+++. -++.. +...+++.++++||
T Consensus 160 ~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~if 237 (294)
T 3hh8_A 160 AYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSAYI--WEINTEEEGTPDQISSLIEKLKVIKPSALF 237 (294)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTCCEEEE--ESSCCSCCCCHHHHHHHHHHHHHSCCSCEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCCceeec--cccCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3333444444444431 333333556666778888888888654432 223332 34544 55566778999999
Q ss_pred EcccchHH-HHHHhhhcCCeEE
Q 010425 130 TQAVYNDK-VRDLSEHHGARIV 150 (511)
Q Consensus 130 ~~~~~~~~-~~~~~~~~~~~~i 150 (511)
+.+..... ...+.++.+.+++
T Consensus 238 ~e~~~~~~~~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 238 VESSVDRRPMETVSKDSGIPIY 259 (294)
T ss_dssp EETTSCSHHHHHHHHHHCCCEE
T ss_pred EeCCCCcHHHHHHHHHhCCcEE
Confidence 98765544 4455555666665
No 112
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=27.74 E-value=1e+02 Score=27.86 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=44.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHH---HHhcCceEEEEcccchHHH-HHHhhhcCCeEEEeC
Q 010425 79 VIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQ---AIASKAKIIITQAVYNDKV-RDLSEHHGARIVTID 153 (511)
Q Consensus 79 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~---l~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~i~~~ 153 (511)
+..+..-+...+++-.|++-..|..-+-=....++..+..+ +++.++++||+.+...... ..+.++.+.+++.++
T Consensus 191 ~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v~~l~ 269 (312)
T 2o1e_A 191 KEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTEVLN 269 (312)
T ss_dssp CEEEESSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEECCC
T ss_pred CEEEEECCchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCcEEEec
Confidence 44566777888887777665444321111123456665555 4557889999988766553 444455566655543
No 113
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=27.37 E-value=1.5e+02 Score=21.62 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEeCCCCC-CC----HHHHHHHHHhccc
Q 010425 450 PAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSK-IT----EDEIKQYISKQVI 506 (511)
Q Consensus 450 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~~----~~~l~~~l~~~l~ 506 (511)
...|.+++.+.|+|.++.=+-....+....+-+-|+..+... .+ ..++++.|+.++|
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 356788888999998876555544333445556666654422 11 2445566666555
No 114
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=27.34 E-value=39 Score=29.82 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.4
Q ss_pred HHHHHHHHHCCCCCCCEEEEEcCC
Q 010425 63 RKVAAGLSKLGVQKGDVIMLLLQN 86 (511)
Q Consensus 63 ~~la~~L~~~gi~~g~~V~i~~~~ 86 (511)
..|.+.|+++|+++||.|.+++.=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 456778999999999999999874
No 115
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=27.09 E-value=1.5e+02 Score=27.08 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=50.0
Q ss_pred CeeeHHHHHHHH--HHHH-HHHHH-CCCCCCCEEEEEcC-CChhHHHHHHHHHhhCC-eEeccCCCCCHHHHHHHHHhcC
Q 010425 51 DVYTYADVELTS--RKVA-AGLSK-LGVQKGDVIMLLLQ-NCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASK 124 (511)
Q Consensus 51 ~~~Ty~~l~~~~--~~la-~~L~~-~gi~~g~~V~i~~~-~~~~~~~~~lA~~~~G~-~~v~~~~~~~~~~~~~~l~~~~ 124 (511)
..+++.+..... -..| +.|.+ .++++|++|+|... ...-.+++++|-. .|+ +++..+..-..++....++..+
T Consensus 138 ~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (357)
T 1zsy_A 138 SDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLG 216 (357)
T ss_dssp SSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTT
T ss_pred CCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcC
Confidence 346676654321 1112 23444 47999999999987 5567777777754 577 4455555444455556677889
Q ss_pred ceEEEEc
Q 010425 125 AKIIITQ 131 (511)
Q Consensus 125 ~~~vi~~ 131 (511)
++.++..
T Consensus 217 a~~vi~~ 223 (357)
T 1zsy_A 217 AEHVITE 223 (357)
T ss_dssp CSEEEEH
T ss_pred CcEEEec
Confidence 8887753
No 116
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=26.97 E-value=1.5e+02 Score=27.14 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=43.0
Q ss_pred HHHHH--CCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcc
Q 010425 67 AGLSK--LGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQA 132 (511)
Q Consensus 67 ~~L~~--~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~ 132 (511)
+.|.+ .++++|++|+|......-.+++++|-...|+.++.+.. +++. ...+++.+++.++...
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEK-LKLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHH-HHHHHHTTCSEEEETT
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHH-HHHHHHhCCCEEEecc
Confidence 34555 78999999999988667777777776543776555543 3333 3455678888877643
No 117
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=26.57 E-value=3.7e+02 Score=24.51 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=6.1
Q ss_pred eChHHHHHHHhc
Q 010425 448 VAPAELEAMLIA 459 (511)
Q Consensus 448 i~~~~ie~~l~~ 459 (511)
...++++..+..
T Consensus 386 ~t~~~i~~~~~~ 397 (406)
T 1kmj_A 386 NTHEEVDRLVTG 397 (406)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 345555555443
No 118
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=26.27 E-value=1.2e+02 Score=27.49 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=41.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccch
Q 010425 77 GDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYN 135 (511)
Q Consensus 77 g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~ 135 (511)
+..| +....+-.-..+.++|.+.|..++.+-|...++.....++..++++++++....
T Consensus 54 ~~~v-v~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~ 111 (318)
T 2rkb_A 54 CRHL-VCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWD 111 (318)
T ss_dssp CCEE-EECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHH
T ss_pred CCEE-EEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHH
Confidence 3444 444456666666777889998877766665556677788999999999876543
No 119
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.86 E-value=1.8e+02 Score=27.07 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.7
Q ss_pred CCCCCCCEEEEEcCCCh
Q 010425 72 LGVQKGDVIMLLLQNCP 88 (511)
Q Consensus 72 ~gi~~g~~V~i~~~~~~ 88 (511)
..+++||+|+|++|.+.
T Consensus 38 ~~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCCTTCEEEEECSSCC
T ss_pred CCCCCcCEEEEEeCCCC
Confidence 46899999999999874
No 120
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=25.60 E-value=2e+02 Score=25.96 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=49.6
Q ss_pred CeeeHHHHHHHHHH---HHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceE
Q 010425 51 DVYTYADVELTSRK---VAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKI 127 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~---la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ 127 (511)
..+++.+....... .-+.|...++++|++|+|....+.-.+++++|- ..|+.++.+.. +++. ...+++.++..
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAK-LNLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHH-HHHHHHcCCCE
Confidence 45677665432222 123455568999999999987667777777775 45876665544 3333 34567788887
Q ss_pred EEEcc
Q 010425 128 IITQA 132 (511)
Q Consensus 128 vi~~~ 132 (511)
++...
T Consensus 214 ~i~~~ 218 (340)
T 3s2e_A 214 AVNAR 218 (340)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 77543
No 121
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=25.25 E-value=44 Score=29.70 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=24.3
Q ss_pred CCeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC
Q 010425 50 GDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQN 86 (511)
Q Consensus 50 ~~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~ 86 (511)
+..+|-++| .+.|+++|+++||.|.+++.=
T Consensus 19 ~~~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL 48 (286)
T 3sma_A 19 RELVTRDRL-------ASDLAALGVRPGGVLLVHASL 48 (286)
T ss_dssp CCEECHHHH-------HHHHHHHTCCTTCEEEEEECS
T ss_pred CCCcCHHHH-------HHHHHHcCCCCCCEEEEEech
Confidence 467777765 567888999999999999763
No 122
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=25.13 E-value=44 Score=29.57 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.5
Q ss_pred HHHHHHHHCCCCCCCEEEEEcCC
Q 010425 64 KVAAGLSKLGVQKGDVIMLLLQN 86 (511)
Q Consensus 64 ~la~~L~~~gi~~g~~V~i~~~~ 86 (511)
.|.+.|+++|+++||.|.+++.=
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHHcCCCCCCEEEEEech
Confidence 35678899999999999999863
No 123
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=24.82 E-value=3.6e+02 Score=25.48 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=37.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHH---------HHHhhCCeEeccCCC---CCHHHHHHHHHh-cCceEEEEcc
Q 010425 74 VQKGDVIMLLLQNCPQFVFAFL---------GASYIGATSTTANPF---YTPPEIAKQAIA-SKAKIIITQA 132 (511)
Q Consensus 74 i~~g~~V~i~~~~~~~~~~~~l---------A~~~~G~~~v~~~~~---~~~~~~~~~l~~-~~~~~vi~~~ 132 (511)
+++||.|.+...+.......++ .+...|+.++.++.. ...+.+...+++ .++++|++..
T Consensus 113 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 113 LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 6889998777623333222222 233568887777652 466888888875 5778888766
No 124
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=24.78 E-value=1.9e+02 Score=26.26 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=13.9
Q ss_pred CCCCCCEEEEEcCCCh
Q 010425 73 GVQKGDVIMLLLQNCP 88 (511)
Q Consensus 73 gi~~g~~V~i~~~~~~ 88 (511)
.+++||+|+|++|.+.
T Consensus 8 ~L~~GD~I~ivaPS~~ 23 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCS 23 (331)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 4789999999999875
No 125
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=24.78 E-value=1.2e+02 Score=26.81 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=45.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhhCCeEeccCC--CCCHHH---HHHHHHhcCceEEEEcccchHH-HHHHhhhcCCeEEEe
Q 010425 79 VIMLLLQNCPQFVFAFLGASYIGATSTTANP--FYTPPE---IAKQAIASKAKIIITQAVYNDK-VRDLSEHHGARIVTI 152 (511)
Q Consensus 79 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~--~~~~~~---~~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~i~~ 152 (511)
+..+...+...+++-.|++-..|.. -+++ ..++.. +...+++.++++||+.+....+ ...+.++.+.+++.+
T Consensus 175 ~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l 252 (284)
T 2prs_A 175 KGYFVFHDAYGYFEKQFGLTPLGHF--TVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTL 252 (284)
T ss_dssp CCEEEEESCCHHHHHHHTCCCCEEE--ESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEEC
T ss_pred CeEEEECccHHHHHHHCCCeEeEee--ccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEe
Confidence 3345566688888888887655433 2332 235554 4456677899999998776544 444444556665554
Q ss_pred C
Q 010425 153 D 153 (511)
Q Consensus 153 ~ 153 (511)
+
T Consensus 253 d 253 (284)
T 2prs_A 253 D 253 (284)
T ss_dssp C
T ss_pred c
Confidence 3
No 126
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=24.53 E-value=1.8e+02 Score=26.46 Aligned_cols=75 Identities=12% Similarity=-0.065 Sum_probs=46.4
Q ss_pred CeeeHHHHHHHHHHH---HHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceE
Q 010425 51 DVYTYADVELTSRKV---AAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKI 127 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~l---a~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ 127 (511)
..+++.+........ -+.|.+.++++|++|+|......-.+++++|- ..|+.++.+..+- +. ...+++.+++.
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~-~~~~~~lGa~~ 223 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HK-KQDALSMGVKH 223 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TT-HHHHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HH-HHHHHhcCCCe
Confidence 346666654222221 23455678999999999987556777777775 4687666555432 22 23456678877
Q ss_pred EE
Q 010425 128 II 129 (511)
Q Consensus 128 vi 129 (511)
++
T Consensus 224 v~ 225 (348)
T 3two_A 224 FY 225 (348)
T ss_dssp EE
T ss_pred ec
Confidence 77
No 127
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=24.46 E-value=1.6e+02 Score=28.17 Aligned_cols=59 Identities=8% Similarity=-0.099 Sum_probs=43.2
Q ss_pred EEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccchHHH
Q 010425 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKV 138 (511)
Q Consensus 80 V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 138 (511)
..+....+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++....+..
T Consensus 162 ~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~ 220 (442)
T 3ss7_X 162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAV 220 (442)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 45556666666677778899998877666665666677788999999999987654433
No 128
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=24.30 E-value=3.7e+02 Score=24.22 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=8.0
Q ss_pred eeChHHHHHHHhcC
Q 010425 447 QVAPAELEAMLIAH 460 (511)
Q Consensus 447 ~i~~~~ie~~l~~~ 460 (511)
.+..++|+..+..+
T Consensus 356 ~~~~~~i~~~~~~l 369 (384)
T 1eg5_A 356 YNTEEEVDYFLKKI 369 (384)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 34566666665544
No 129
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=23.76 E-value=2.1e+02 Score=25.69 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=47.8
Q ss_pred CeeeHHHHHHHHHH---HHHHHHHCCCCCCCEEEEEc-CCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCce
Q 010425 51 DVYTYADVELTSRK---VAAGLSKLGVQKGDVIMLLL-QNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAK 126 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~---la~~L~~~gi~~g~~V~i~~-~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~ 126 (511)
..+++.+....... .-+.|...++++|++|+|.. ....-.+++++|- ..|+.++.+. +.+. ...+++.++.
T Consensus 124 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 124 EKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 34566665443222 22334557899999999996 5566777777775 5587655443 3444 5566777887
Q ss_pred EEEEc
Q 010425 127 IIITQ 131 (511)
Q Consensus 127 ~vi~~ 131 (511)
.++..
T Consensus 199 ~~i~~ 203 (321)
T 3tqh_A 199 QCINY 203 (321)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 76643
No 130
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=23.58 E-value=1.3e+02 Score=27.89 Aligned_cols=55 Identities=15% Similarity=0.052 Sum_probs=40.3
Q ss_pred EEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEcccc
Q 010425 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVY 134 (511)
Q Consensus 80 V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~~ 134 (511)
..+.+..+---..+.++|.+.|..++.+-|...+......++..++++++++...
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~ 149 (372)
T 1p5j_A 95 HFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELL 149 (372)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSCH
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCCH
Confidence 3444444666666677788999887776666666677788899999999988643
No 131
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=23.54 E-value=4.3e+02 Score=24.22 Aligned_cols=31 Identities=16% Similarity=-0.058 Sum_probs=13.5
Q ss_pred CCeEeccCCCCCHHH--HHHHHHhcCceEEEEc
Q 010425 101 GATSTTANPFYTPPE--IAKQAIASKAKIIITQ 131 (511)
Q Consensus 101 G~~~v~~~~~~~~~~--~~~~l~~~~~~~vi~~ 131 (511)
|-.++...+.+.... +....+..+++++.++
T Consensus 118 gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 150 (420)
T 1t3i_A 118 GDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQ 150 (420)
T ss_dssp TCEEEEETTCCGGGTHHHHHHHHHHCCEEEEEC
T ss_pred CCEEEECcchhHHHHHHHHHHHHhcCcEEEEec
Confidence 433444444444321 3334444555555544
No 132
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=22.86 E-value=1.3e+02 Score=27.53 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=39.3
Q ss_pred EEEEcCCChhHHHHHHHHHhhCCeEeccCCCC-CHHHHHHHHHhcCceEEEEcccch
Q 010425 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFY-TPPEIAKQAIASKAKIIITQAVYN 135 (511)
Q Consensus 80 V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~-~~~~~~~~l~~~~~~~vi~~~~~~ 135 (511)
..+....+-.-..+.++|.+.|..++.+-|.. .+..-...++..++++++++....
T Consensus 79 ~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~~~ 135 (351)
T 3aey_A 79 AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFD 135 (351)
T ss_dssp EEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 44445555555656688889999877666554 455666788899999999987543
No 133
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=22.72 E-value=4.5e+02 Score=24.10 Aligned_cols=32 Identities=6% Similarity=-0.237 Sum_probs=13.8
Q ss_pred hCCeEeccCCCCCHHHHHHHHHhcCceEEEEc
Q 010425 100 IGATSTTANPFYTPPEIAKQAIASKAKIIITQ 131 (511)
Q Consensus 100 ~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~ 131 (511)
-|-.++..++.+....+...++..+++++.++
T Consensus 85 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 116 (416)
T 3isl_A 85 PEDDVLIPIYGRFGYLLTEIAERYGANVHMLE 116 (416)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEecCCcccHHHHHHHHhcCCeeEEEe
Confidence 33333333343333234444555555555544
No 134
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=22.57 E-value=3.3e+02 Score=25.75 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=36.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHH---------HHHhhCCeEeccCCC----CCHHHHHHHHHh-cCceEEEEcc
Q 010425 74 VQKGDVIMLLLQNCPQFVFAFL---------GASYIGATSTTANPF----YTPPEIAKQAIA-SKAKIIITQA 132 (511)
Q Consensus 74 i~~g~~V~i~~~~~~~~~~~~l---------A~~~~G~~~v~~~~~----~~~~~~~~~l~~-~~~~~vi~~~ 132 (511)
+++||.|.+...+.......++ .+...|+.++.++.+ ...+.+...+++ .+.++|++..
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 5689988776512332222222 234568877777653 567888888874 5677777765
No 135
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=22.35 E-value=4e+02 Score=23.36 Aligned_cols=46 Identities=7% Similarity=-0.023 Sum_probs=29.1
Q ss_pred eeeHHH-HHHHHHHHHHHHHHCC-CCCCCEEEEEcCCChhHHHHHHHHHhh
Q 010425 52 VYTYAD-VELTSRKVAAGLSKLG-VQKGDVIMLLLQNCPQFVFAFLGASYI 100 (511)
Q Consensus 52 ~~Ty~~-l~~~~~~la~~L~~~g-i~~g~~V~i~~~~~~~~~~~~lA~~~~ 100 (511)
.+++.+ +...+..|-.++++.| . ..|++-+.-+.+..++..-|.++
T Consensus 16 ~~~~~~~i~~~~~~L~~~l~~~g~~---~~vvvglSGGvDSsv~a~L~~~a 63 (275)
T 1wxi_A 16 QINAEEEIRRSVDFLKSYLQTYPFI---KSLVLGISGGQDSTLAGKLCQMA 63 (275)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSTTC---CEEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC---CCEEEECcCcHHHHHHHHHHHHH
Confidence 355544 4455666666676655 3 36888899999876665444443
No 136
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=21.97 E-value=1.5e+02 Score=27.11 Aligned_cols=79 Identities=11% Similarity=-0.013 Sum_probs=47.0
Q ss_pred CeeeHHHHHHHHHH---HHHHHHHCCCC-CCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCce
Q 010425 51 DVYTYADVELTSRK---VAAGLSKLGVQ-KGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAK 126 (511)
Q Consensus 51 ~~~Ty~~l~~~~~~---la~~L~~~gi~-~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~ 126 (511)
..+++.+....... .-+.|.+.+++ +|++|+|......-.+++++|-. .|+.++.+..+ ++.+....+..+++
T Consensus 151 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~ 227 (357)
T 2cf5_A 151 EGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGAD 227 (357)
T ss_dssp SSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCS
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCc
Confidence 34667664322111 12335567888 99999999876667777777754 57765544432 33333444477777
Q ss_pred EEEEcc
Q 010425 127 IIITQA 132 (511)
Q Consensus 127 ~vi~~~ 132 (511)
.++...
T Consensus 228 ~vi~~~ 233 (357)
T 2cf5_A 228 DYVIGS 233 (357)
T ss_dssp CEEETT
T ss_pred eeeccc
Confidence 766543
No 137
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=21.52 E-value=2.8e+02 Score=25.00 Aligned_cols=64 Identities=6% Similarity=-0.061 Sum_probs=41.6
Q ss_pred HHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCCCCHHHHHHHHHhcCceEEEEccc
Q 010425 67 AGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAV 133 (511)
Q Consensus 67 ~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 133 (511)
..+...++++|++|+|....+.-.+++++|-..-...++.++. ++ +-..++++.++..++...+
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~--~~-~k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI--SS-EKLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES--CH-HHHHHHHHTTCSEEEETTT
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec--hH-HHHHHHHHcCCeEEEeCCC
Confidence 3345578999999999987666677766665443334444443 23 3345667888888876543
No 138
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=21.44 E-value=4.7e+02 Score=23.88 Aligned_cols=32 Identities=13% Similarity=0.008 Sum_probs=14.2
Q ss_pred hCCeEeccCCCCCH--HHHHHHHHhcCceEEEEc
Q 010425 100 IGATSTTANPFYTP--PEIAKQAIASKAKIIITQ 131 (511)
Q Consensus 100 ~G~~~v~~~~~~~~--~~~~~~l~~~~~~~vi~~ 131 (511)
-|-.++..++.+.. ..+..+.+..+++++.++
T Consensus 112 ~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~ 145 (406)
T 3cai_A 112 LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAE 145 (406)
T ss_dssp TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEEC
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEe
Confidence 34444444454433 222222233566666654
No 139
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=21.35 E-value=3.3e+02 Score=24.71 Aligned_cols=48 Identities=8% Similarity=-0.216 Sum_probs=21.8
Q ss_pred cCCChhHHHHHHHHH--hhCCeEeccCCCCCHHH--HHHHHHhcCceEEEEc
Q 010425 84 LQNCPQFVFAFLGAS--YIGATSTTANPFYTPPE--IAKQAIASKAKIIITQ 131 (511)
Q Consensus 84 ~~~~~~~~~~~lA~~--~~G~~~v~~~~~~~~~~--~~~~l~~~~~~~vi~~ 131 (511)
.+++.+.+.+.+.++ .-|-.++...|.+..-. +..+.+..+++++.++
T Consensus 82 ~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 133 (390)
T 1elu_A 82 TDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFP 133 (390)
T ss_dssp ESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEEC
T ss_pred eCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEc
Confidence 344444444333333 33444444555554432 2333445566665554
No 140
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=21.19 E-value=1.8e+02 Score=27.52 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHH--CCCCCCCEEEEEcCCCh-hH-HHHHHHHHhhCCeEeccC
Q 010425 58 VELTSRKVAAGLSK--LGVQKGDVIMLLLQNCP-QF-VFAFLGASYIGATSTTAN 108 (511)
Q Consensus 58 l~~~~~~la~~L~~--~gi~~g~~V~i~~~~~~-~~-~~~~lA~~~~G~~~v~~~ 108 (511)
+.++..++|..+.+ .++++|+.|.|..+... ++ -.+.-++.++|+-++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 45677888888876 57899999999998653 33 334456677888777544
No 141
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=21.05 E-value=4.6e+02 Score=23.79 Aligned_cols=80 Identities=15% Similarity=0.012 Sum_probs=48.3
Q ss_pred eeeHHHHHHHH--HHHH-HHHHH-CCCCCC-CEEEEEcC-CChhHHHHHHHHHhhCCeEeccC-CCCCHHHHHHHHHhcC
Q 010425 52 VYTYADVELTS--RKVA-AGLSK-LGVQKG-DVIMLLLQ-NCPQFVFAFLGASYIGATSTTAN-PFYTPPEIAKQAIASK 124 (511)
Q Consensus 52 ~~Ty~~l~~~~--~~la-~~L~~-~gi~~g-~~V~i~~~-~~~~~~~~~lA~~~~G~~~v~~~-~~~~~~~~~~~l~~~~ 124 (511)
.+++.+..... -..| +.|.+ .++++| ++|+|... ...-.+++++|-. .|+..+.+. .....++....++..+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKL-LNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHH-HTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHH-CCCEEEEEecCccccHHHHHHHHhcC
Confidence 47776654322 1122 33444 379999 99999987 5667777777764 577544443 3322233344557788
Q ss_pred ceEEEEcc
Q 010425 125 AKIIITQA 132 (511)
Q Consensus 125 ~~~vi~~~ 132 (511)
++.++...
T Consensus 217 a~~vi~~~ 224 (364)
T 1gu7_A 217 ATQVITED 224 (364)
T ss_dssp CSEEEEHH
T ss_pred CeEEEecC
Confidence 88887643
No 142
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.02 E-value=1.7e+02 Score=22.64 Aligned_cols=46 Identities=4% Similarity=-0.052 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCcceeEEEeeeCCCCCceEEEEEEe-CCCCCCCHHHHHHHHHhccc
Q 010425 451 AELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVR-SNGSKITEDEIKQYISKQVI 506 (511)
Q Consensus 451 ~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~l~~~l~ 506 (511)
.++.+.+.++|+|.+|..+. + ..-..+.|.. . +.+++.+.+.++|.
T Consensus 83 ~~~~~~l~~~peV~~~~~vt----G-~~d~~~~v~~~~-----d~~~l~~~~~~~l~ 129 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGV----G-RYNIIVRLLLPK-----DIKDAENLISEFLQ 129 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEE----S-SCSEEEEEEEES-----SHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEeEec----C-CCCEEEEEEEcC-----CHHHHHHHHHHHhh
Confidence 57888889999999999874 2 2224455554 4 45666666644443
No 143
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=20.74 E-value=2.2e+02 Score=24.94 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=43.6
Q ss_pred CCHhhHHhhhcccCCCCcEEEeCCCC----CeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHH
Q 010425 25 LPLHTYCFENISQFADRPCIINGPTG----DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFV 91 (511)
Q Consensus 25 ~t~~~~l~~~~~~~p~~~a~~~~~~~----~~~Ty~~l~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~ 91 (511)
+|+...+ .+..|+...+..+|+. ...|..++.+++.+.++.|.+.|. ...+++-|+...+
T Consensus 18 ltv~~~i---~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~ 81 (269)
T 3ist_A 18 LTVVREV---LKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAA 81 (269)
T ss_dssp HHHHHHH---HHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHH
T ss_pred HHHHHHH---HHHCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHH
Confidence 4444444 4467888888766543 678899999999999999998644 4666666777653
No 144
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=20.67 E-value=1.8e+02 Score=25.11 Aligned_cols=39 Identities=3% Similarity=-0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhC
Q 010425 60 LTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101 (511)
Q Consensus 60 ~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G 101 (511)
+..+++..+|++. .+++|++....+.+..++..-|.+++
T Consensus 8 ~~~~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~ 46 (257)
T 2e18_A 8 KVIERILEFIREK---GNNGVVIGISGGVDSATVAYLATKAL 46 (257)
T ss_dssp HHHHHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhc
Confidence 3445666777765 35679999999999877766666654
No 145
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=20.59 E-value=4e+02 Score=24.61 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=36.5
Q ss_pred HHHCCCCCCCEEEEEcCCChhHHHHHHHHHhhCC-eEeccCCCCCHHHHHHHHHhcCceE
Q 010425 69 LSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGA-TSTTANPFYTPPEIAKQAIASKAKI 127 (511)
Q Consensus 69 L~~~gi~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~~~~~~~~~~~~~~l~~~~~~~ 127 (511)
|...++++|++|+|......-.+++++|- ..|+ .++.++. +++. ..+++..++.+
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~ 233 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASAR-LLGAAVVIVGDL--NPAR-LAHAKAQGFEI 233 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCEE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCCeEEEEcC--CHHH-HHHHHHcCCcE
Confidence 44568999999999986556777777775 4577 4444443 3333 34557788873
No 146
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=20.56 E-value=4.8e+02 Score=23.61 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=5.9
Q ss_pred ChHHHHHHHhc
Q 010425 449 APAELEAMLIA 459 (511)
Q Consensus 449 ~~~~ie~~l~~ 459 (511)
..++|+..+..
T Consensus 375 ~~~~i~~~l~~ 385 (391)
T 4dq6_A 375 PRSMLEEALIR 385 (391)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44566655543
No 147
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=20.32 E-value=1.5e+02 Score=27.24 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=39.4
Q ss_pred EEEEcCCChhHHHHHHHHHhhCCeEeccCCCC-CHHHHHHHHHhcCceEEEEcccch
Q 010425 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFY-TPPEIAKQAIASKAKIIITQAVYN 135 (511)
Q Consensus 80 V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~-~~~~~~~~l~~~~~~~vi~~~~~~ 135 (511)
..+....+-.-..+.++|.+.|..++.+-|.. .+..-...++..++++++++....
T Consensus 81 ~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~~ 137 (352)
T 2zsj_A 81 AVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFD 137 (352)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESSCHH
T ss_pred EEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 44444555555556688889999877766654 455566788899999999987543
No 148
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=20.24 E-value=1.7e+02 Score=27.00 Aligned_cols=55 Identities=22% Similarity=0.067 Sum_probs=39.1
Q ss_pred EEEEcCCChhHHHHHHHHHhhCCeEeccCCCC-CHHHHHHHHHhcCceEEEEcccc
Q 010425 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFY-TPPEIAKQAIASKAKIIITQAVY 134 (511)
Q Consensus 80 V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~~-~~~~~~~~l~~~~~~~vi~~~~~ 134 (511)
..+....+-.-..+.++|.+.|.-++.+-|.. .+..-...++..++++++++...
T Consensus 87 ~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~ 142 (360)
T 2d1f_A 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNF 142 (360)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSSCH
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 34444555555556688889999877766654 55666678899999999988654
No 149
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=20.07 E-value=4.5e+02 Score=24.08 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=38.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhhCCeEeccCCC----CCHHHHHHHHHhcCceEEEEccc--------chHHHHHH
Q 010425 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF----YTPPEIAKQAIASKAKIIITQAV--------YNDKVRDL 141 (511)
Q Consensus 74 i~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~~~~~----~~~~~~~~~l~~~~~~~vi~~~~--------~~~~~~~~ 141 (511)
+++||.|.+..+...... ..-++...|+.++.++.+ ...+.+...++..+.++++.... ..+.+.++
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l 161 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEA 161 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHH
Confidence 567888777765433211 222344557655544432 35677777777545555554321 23445555
Q ss_pred hhhcCCe
Q 010425 142 SEHHGAR 148 (511)
Q Consensus 142 ~~~~~~~ 148 (511)
....+..
T Consensus 162 ~~~~~~~ 168 (416)
T 3isl_A 162 CRTEDAL 168 (416)
T ss_dssp HHHTTCE
T ss_pred HHHcCCE
Confidence 5554443
Done!