BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010426
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 38/199 (19%)
Query: 170 TSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLR 229
++ LT+ + +P+ IA S +++ L + C T LP L S+ +GL
Sbjct: 127 AGLETLTLARNPLRALPASIA--SLNRLRELSIRACPELTELPE-PLASTDASGEHQGLV 183
Query: 230 KLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSG 289
L+S+ LE LP +A +L+ L I N S S
Sbjct: 184 NLQSL-----------RLEWTGIRSLPA-----------SIANLQNLKSLKIRN-SPLSA 220
Query: 290 ILPLCKN-SQLESLCIRYCDSLTFIARRKLP------SSLKWLEIENCEKLESLPNDMHE 342
+ P + +LE L +R C +L R P + LK L +++C L +LP D+H
Sbjct: 221 LGPAIHHLPKLEELDLRGCTAL-----RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275
Query: 343 LNYLQHLCINRCPSIVRFP 361
L L+ L + C ++ R P
Sbjct: 276 LTQLEKLDLRGCVNLSRLP 294
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 31/202 (15%)
Query: 217 LSSLKHLTV--KGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFS 274
LS L+H T+ GL +L F LETL P + +A +
Sbjct: 103 LSHLQHXTIDAAGLXELPD------TXQQFAGLETLTLARNP------LRALPASIASLN 150
Query: 275 SLRELSILNCSKFSGIL-PLC---KNSQLESLCIRYCDSLTFIARRKLPSS------LKW 324
LRELSI C + + + PL + + + L L + R LP+S LK
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 325 LEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKA 384
L+I N L +L +H L L+ L + C ++ +P P ++R+ +K
Sbjct: 211 LKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLILKDCSN 265
Query: 385 IIHWGL--HRLTSLRRLWIEGC 404
++ L HRLT L +L + GC
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGC 287
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 33/186 (17%)
Query: 333 LESLPNDMHELNYLQHLCINRCPSIVRFPE-------EGFPTNLVELEIRRVDVKMYKAI 385
L +LP + LN L+ L I CP + PE G LV L+ R++ +++
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 386 IHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKG-- 443
+ L +L+ L I P +G + L L + R L +
Sbjct: 199 P-ASIANLQNLKSLKIRNS--------PLSALGPAI-HHLPKLEELDLRGCTALRNYPPI 248
Query: 444 FQSLTSLEFLWIDDCPNLTSFPEAGLPSSILWLNIWSCPKLEKV----CKWHTKEGSKIA 499
F L+ L + DC NL + P L+I +LEK+ C ++ S IA
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLP----------LDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 500 NIPRVC 505
+P C
Sbjct: 299 QLPANC 304
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 318 LPSSLKWLEIENCEKLESLPNDM-HELNYLQHLCI--NRCPSIVRFPEEGFPTNLVELEI 374
+P+ +L++E L+SLPN + EL L L + N+ S+ G L L
Sbjct: 26 IPAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTY 80
Query: 375 RRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFR 434
+ +++ + +LT L+ L + + ++ + PD + T L L + ++
Sbjct: 81 LNLSTNQLQSLPNGVFDKLTQLKELAL---NTNQLQSLPDGVFDKL--TQLKDLRL--YQ 133
Query: 435 N-LKMLSSKGFQSLTSLEFLWIDDCP 459
N LK + F LTSL+++W+ D P
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDNP 159
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 364 GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPT 423
G P++ LE+ + +++ H +LT L +L + ++ + PD +
Sbjct: 25 GIPSSATRLEL---ESNKLQSLPHGVFDKLTQLTKLSLS---QNQIQSLPDGVFDKLTKL 78
Query: 424 SLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLPSSILWLNIW---- 479
++ YL+ L+ L + F LT L+ L +D L S P+ IW
Sbjct: 79 TILYLH---ENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 134
Query: 480 ----SCPKLEKVCKWHTKEGSK 497
SCP+++ + +W K K
Sbjct: 135 PWDCSCPRIDYLSRWLNKNSQK 156
>pdb|3E3M|A Chain A, Crystal Structure Of A Laci Family Transcriptional
Regulator From Silicibacter Pomeroyi
pdb|3E3M|B Chain B, Crystal Structure Of A Laci Family Transcriptional
Regulator From Silicibacter Pomeroyi
pdb|3E3M|C Chain C, Crystal Structure Of A Laci Family Transcriptional
Regulator From Silicibacter Pomeroyi
pdb|3E3M|D Chain D, Crystal Structure Of A Laci Family Transcriptional
Regulator From Silicibacter Pomeroyi
Length = 355
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 204 NCENCTS-LPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLE 248
+C C S +P+FGLLS LK + V ++ +G+G + F S E
Sbjct: 252 DCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFGNFEVSRFASPE 297
>pdb|1STZ|A Chain A, Crystal Structure Of A Hypothetical Protein At 2.2 A
Resolution
pdb|1STZ|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.2 A
Resolution
pdb|1STZ|C Chain C, Crystal Structure Of A Hypothetical Protein At 2.2 A
Resolution
Length = 338
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 306 YCDSLTFIARRKLPSSLKWLEIENCE-KLESLPNDMHELNYLQ-----HLCINRCPS 356
YC +I +K SS + LE+ N E ++ NDM +L YL H R P+
Sbjct: 24 YCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAGRIPT 80
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 148/368 (40%), Gaps = 76/368 (20%)
Query: 159 EELVLGKLKPCTSIKKL---TIKGYGGKKIPSW-IADPSFSKMEVLGLENCENCTSLPSF 214
LVLG+ + +++K ++G I + +A + +++ L NC T++ SF
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC--LTNVSSF 287
Query: 215 GLLSSLKHLTVKGLRKLKSMGYG----EHCSNPFQSLETLWFEDLPEWEYWDTKFEENGV 270
L+S +T++ ++ S +G E + F TL + L + K G
Sbjct: 288 SLVS----VTIERVKDF-SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK----GG 338
Query: 271 AGFS--SLRELSILNCSK----FSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKW 324
FS L L L+ S+ F G C S + ++Y D L+F + S+ +
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGC---CSQSDFGTTSLKYLD-LSFNGVITMSSN--F 392
Query: 325 LEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKA 384
L +E E L+ +++ +++ R NL+ L+I ++
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLR--------------NLIYLDISHTHTRVAFN 438
Query: 385 IIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRN--LKMLSSK 442
I GL +SL L + G + + PD + T L L + L+ LS
Sbjct: 439 GIFNGL---SSLEVLKMAG-NSFQENFLPD------IFTELRNLTFLDLSQCQLEQLSPT 488
Query: 443 GFQSLTSLEFLWIDDCPNLTSFPEAGLPSSI---------LWL--NIW--SCPKLEKVCK 489
F SL+SL+ L N+ S +P I +WL N W SCP+++ + +
Sbjct: 489 AFNSLSSLQVL------NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542
Query: 490 WHTKEGSK 497
W K K
Sbjct: 543 WLNKNSQK 550
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,442,860
Number of Sequences: 62578
Number of extensions: 625756
Number of successful extensions: 1497
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1484
Number of HSP's gapped (non-prelim): 24
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)