Query 010426
Match_columns 511
No_of_seqs 177 out of 2274
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 00:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-32 3.2E-37 303.7 20.2 450 3-484 116-584 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-31 3.4E-36 295.6 19.7 450 3-481 138-604 (968)
3 KOG4194 Membrane glycoprotein 99.9 9.4E-28 2E-32 228.5 6.6 380 8-479 55-447 (873)
4 KOG4194 Membrane glycoprotein 99.9 4.2E-27 9.2E-32 224.1 2.7 341 7-414 80-433 (873)
5 PLN03210 Resistant to P. syrin 99.9 3.8E-24 8.2E-29 237.3 21.8 361 22-485 552-944 (1153)
6 KOG0472 Leucine-rich repeat pr 99.9 1.1E-28 2.5E-33 224.9 -13.6 442 2-485 65-542 (565)
7 KOG0444 Cytoskeletal regulator 99.9 5.6E-27 1.2E-31 225.0 -6.8 365 2-462 4-376 (1255)
8 PLN03210 Resistant to P. syrin 99.9 1.9E-22 4.2E-27 223.7 23.4 291 169-487 610-909 (1153)
9 KOG0618 Serine/threonine phosp 99.9 4E-25 8.7E-30 221.4 -3.2 407 6-484 46-489 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 4.6E-26 9.9E-31 208.0 -11.1 404 2-460 111-540 (565)
11 KOG0618 Serine/threonine phosp 99.9 1E-23 2.3E-28 211.4 -4.7 439 10-497 3-477 (1081)
12 KOG0444 Cytoskeletal regulator 99.8 8.3E-24 1.8E-28 203.4 -8.1 368 25-485 4-376 (1255)
13 PRK15387 E3 ubiquitin-protein 99.6 4.2E-15 9.1E-20 154.2 16.0 57 7-70 203-259 (788)
14 KOG4237 Extracellular matrix p 99.6 5.5E-18 1.2E-22 155.3 -6.1 80 8-87 70-151 (498)
15 PRK15387 E3 ubiquitin-protein 99.6 1.3E-14 2.8E-19 150.7 16.6 154 274-458 302-455 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 1.8E-13 3.8E-18 143.1 11.8 58 7-70 180-237 (754)
17 PRK15370 E3 ubiquitin-protein 99.5 3.5E-13 7.6E-18 140.9 11.5 243 171-459 179-426 (754)
18 KOG4341 F-box protein containi 99.4 1E-14 2.2E-19 135.2 -5.7 299 196-508 139-458 (483)
19 KOG0617 Ras suppressor protein 99.3 1.5E-14 3.3E-19 117.9 -5.2 81 4-86 32-112 (264)
20 KOG4658 Apoptotic ATPase [Sign 99.3 1.2E-12 2.5E-17 139.1 3.8 99 5-104 523-623 (889)
21 KOG4658 Apoptotic ATPase [Sign 99.2 6.8E-12 1.5E-16 133.4 3.1 229 3-261 543-786 (889)
22 KOG4341 F-box protein containi 99.2 2.9E-13 6.2E-18 125.7 -7.7 288 171-466 139-444 (483)
23 KOG0617 Ras suppressor protein 99.2 5.2E-13 1.1E-17 109.0 -5.6 160 23-234 28-188 (264)
24 KOG4237 Extracellular matrix p 99.1 1.2E-12 2.6E-17 120.6 -5.9 270 170-482 67-357 (498)
25 cd00116 LRR_RI Leucine-rich re 99.0 7.4E-11 1.6E-15 114.0 -0.2 77 9-87 2-92 (319)
26 cd00116 LRR_RI Leucine-rich re 99.0 5.3E-11 1.2E-15 115.0 -1.8 186 3-229 21-232 (319)
27 PRK15386 type III secretion pr 98.9 5.7E-09 1.2E-13 100.0 11.0 164 297-487 52-216 (426)
28 PF14580 LRR_9: Leucine-rich r 98.9 2.9E-10 6.3E-15 97.1 -0.3 84 3-90 17-102 (175)
29 PF14580 LRR_9: Leucine-rich r 98.8 3.3E-09 7.1E-14 90.7 4.6 125 320-455 19-147 (175)
30 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.4E-13 70.9 3.9 58 5-63 1-60 (61)
31 COG4886 Leucine-rich repeat (L 98.7 8.9E-09 1.9E-13 102.6 3.3 171 6-229 117-288 (394)
32 KOG3207 Beta-tubulin folding c 98.5 6.4E-09 1.4E-13 97.7 -2.1 205 168-383 119-339 (505)
33 KOG3207 Beta-tubulin folding c 98.5 1.4E-08 3.1E-13 95.5 -0.3 60 3-63 119-183 (505)
34 KOG0532 Leucine-rich repeat (L 98.5 8.5E-09 1.8E-13 100.0 -2.9 188 9-228 79-270 (722)
35 KOG1909 Ran GTPase-activating 98.4 7.5E-09 1.6E-13 94.6 -4.4 224 3-256 28-281 (382)
36 KOG1259 Nischarin, modulator o 98.4 6.3E-08 1.4E-12 86.8 1.1 126 320-459 284-410 (490)
37 KOG1259 Nischarin, modulator o 98.4 3E-08 6.6E-13 88.8 -2.4 128 3-141 282-409 (490)
38 COG4886 Leucine-rich repeat (L 98.3 2.1E-07 4.6E-12 92.7 2.7 154 6-212 141-294 (394)
39 PF13855 LRR_8: Leucine rich r 98.3 9.5E-07 2.1E-11 61.8 4.4 59 394-458 1-59 (61)
40 PRK15386 type III secretion pr 98.3 4.8E-06 1E-10 80.2 10.1 134 320-481 52-187 (426)
41 KOG2120 SCF ubiquitin ligase, 98.3 1.5E-08 3.2E-13 90.7 -6.7 182 28-256 185-374 (419)
42 PF12799 LRR_4: Leucine Rich r 98.2 8.3E-07 1.8E-11 56.9 2.7 40 5-45 1-40 (44)
43 KOG2120 SCF ubiquitin ligase, 98.2 3.5E-08 7.6E-13 88.3 -6.0 100 274-375 185-294 (419)
44 KOG0532 Leucine-rich repeat (L 98.2 8.7E-08 1.9E-12 93.2 -4.3 173 4-205 97-270 (722)
45 KOG0531 Protein phosphatase 1, 98.1 6.2E-07 1.4E-11 89.6 0.5 82 6-90 73-154 (414)
46 PLN03150 hypothetical protein; 98.0 3.6E-06 7.8E-11 88.2 4.4 83 6-88 419-502 (623)
47 PF12799 LRR_4: Leucine Rich r 98.0 5.1E-06 1.1E-10 53.2 3.0 40 28-69 1-40 (44)
48 PLN03150 hypothetical protein; 98.0 4.1E-06 8.8E-11 87.8 3.7 85 1-85 438-524 (623)
49 KOG1909 Ran GTPase-activating 98.0 6.3E-07 1.4E-11 82.3 -2.5 93 125-229 207-309 (382)
50 KOG0531 Protein phosphatase 1, 97.9 1.1E-06 2.3E-11 87.9 -2.1 82 3-88 93-174 (414)
51 KOG2982 Uncharacterized conser 97.7 5.5E-06 1.2E-10 74.6 -1.6 83 3-86 69-156 (418)
52 KOG3665 ZYG-1-like serine/thre 97.6 2.6E-05 5.6E-10 81.7 1.9 138 5-183 122-263 (699)
53 KOG4579 Leucine-rich repeat (L 97.5 1E-05 2.2E-10 64.4 -2.1 81 9-91 31-115 (177)
54 KOG1644 U2-associated snRNP A' 97.5 8.3E-05 1.8E-09 63.4 3.2 79 6-87 43-124 (233)
55 KOG1859 Leucine-rich repeat pr 97.4 3.1E-06 6.7E-11 85.0 -6.9 123 7-141 166-289 (1096)
56 KOG1947 Leucine rich repeat pr 97.4 5.7E-06 1.2E-10 84.9 -5.5 61 427-488 380-444 (482)
57 KOG3665 ZYG-1-like serine/thre 97.4 0.00015 3.2E-09 76.2 4.5 133 320-462 122-263 (699)
58 KOG1859 Leucine-rich repeat pr 97.4 1.3E-05 2.9E-10 80.6 -3.3 93 4-102 186-279 (1096)
59 KOG4579 Leucine-rich repeat (L 97.2 1.4E-05 3.1E-10 63.5 -3.7 84 3-88 51-135 (177)
60 COG5238 RNA1 Ran GTPase-activa 97.0 0.00012 2.5E-09 65.4 -0.6 196 4-229 29-253 (388)
61 KOG1947 Leucine rich repeat pr 97.0 5.5E-05 1.2E-09 77.6 -3.2 185 295-484 186-389 (482)
62 KOG1644 U2-associated snRNP A' 96.9 0.0014 3.1E-08 56.1 4.7 96 159-255 53-150 (233)
63 KOG2982 Uncharacterized conser 96.7 0.0015 3.3E-08 59.3 3.6 60 295-354 95-156 (418)
64 KOG2739 Leucine-rich acidic nu 96.6 0.001 2.2E-08 59.4 1.7 40 24-63 61-102 (260)
65 KOG2123 Uncharacterized conser 96.5 8.8E-05 1.9E-09 66.4 -5.6 52 346-403 21-72 (388)
66 PF00560 LRR_1: Leucine Rich R 96.3 0.0016 3.6E-08 34.5 0.8 19 7-25 2-20 (22)
67 KOG2739 Leucine-rich acidic nu 96.1 0.0033 7.2E-08 56.2 2.2 106 296-403 42-152 (260)
68 KOG3864 Uncharacterized conser 96.1 0.00088 1.9E-08 57.4 -1.4 77 384-463 115-191 (221)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.0054 1.2E-07 32.5 1.5 19 54-73 2-20 (22)
70 PF13306 LRR_5: Leucine rich r 95.9 0.036 7.9E-07 45.1 7.3 102 340-456 8-111 (129)
71 KOG3864 Uncharacterized conser 95.8 0.0013 2.7E-08 56.5 -1.7 82 320-403 101-185 (221)
72 PF13306 LRR_5: Leucine rich r 94.9 0.2 4.3E-06 40.7 8.6 114 321-451 13-129 (129)
73 KOG2123 Uncharacterized conser 94.8 0.0017 3.7E-08 58.4 -4.1 81 4-88 18-100 (388)
74 PF13504 LRR_7: Leucine rich r 94.6 0.015 3.4E-07 28.5 0.7 16 6-21 2-17 (17)
75 KOG0473 Leucine-rich repeat pr 94.5 0.002 4.4E-08 56.4 -4.2 84 2-87 39-122 (326)
76 PF13504 LRR_7: Leucine rich r 94.1 0.035 7.5E-07 27.2 1.4 15 424-439 2-16 (17)
77 COG5238 RNA1 Ran GTPase-activa 92.1 0.066 1.4E-06 48.4 1.2 42 22-63 86-131 (388)
78 smart00369 LRR_TYP Leucine-ric 91.9 0.1 2.3E-06 28.8 1.5 20 4-23 1-20 (26)
79 smart00370 LRR Leucine-rich re 91.9 0.1 2.3E-06 28.8 1.5 20 4-23 1-20 (26)
80 smart00367 LRR_CC Leucine-rich 88.5 0.28 6E-06 27.1 1.3 16 448-463 2-17 (26)
81 smart00369 LRR_TYP Leucine-ric 87.7 0.33 7.1E-06 26.7 1.3 20 51-71 1-20 (26)
82 smart00370 LRR Leucine-rich re 87.7 0.33 7.1E-06 26.7 1.3 20 51-71 1-20 (26)
83 KOG0473 Leucine-rich repeat pr 86.3 0.03 6.5E-07 49.3 -5.2 67 1-68 61-127 (326)
84 smart00364 LRR_BAC Leucine-ric 82.3 0.87 1.9E-05 25.1 1.2 18 5-22 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 77.4 1.6 3.5E-05 24.1 1.3 17 4-20 1-17 (26)
86 PF13516 LRR_6: Leucine Rich r 67.5 2.6 5.6E-05 22.5 0.7 11 28-38 2-12 (24)
87 smart00368 LRR_RI Leucine rich 61.2 5.7 0.00012 22.2 1.3 14 5-18 2-15 (28)
88 KOG3763 mRNA export factor TAP 48.4 8.5 0.00018 38.9 1.1 86 365-454 216-307 (585)
89 KOG3763 mRNA export factor TAP 46.7 10 0.00022 38.4 1.3 60 4-63 217-281 (585)
90 PF05725 FNIP: FNIP Repeat; I 46.0 39 0.00085 21.2 3.5 32 448-480 12-43 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-32 Score=303.74 Aligned_cols=450 Identities=18% Similarity=0.207 Sum_probs=237.6
Q ss_pred CceeccEeecCCCccc-cCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 3 GWKHLRYLNLSDTRIR-NLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
++++||+|++++|.+. .+|. +.+++|++|++++|.....+|..++.+++|++|++++|.....+|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 5677777887777775 3443 346777777777774445666667777777777777776334566667777777777
Q ss_pred CceeeecCC-CccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCC----CCCCcc-
Q 010426 82 SNFIVGTDT-KSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQ----FDDSRN- 155 (511)
Q Consensus 82 ~~~~~~~~~-~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~- 155 (511)
+++++.+.. .|..+..+.+|+.+ .+..+.+.. ..+..+..+++|+.|++++|......+. ......
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L--~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWI--YLGYNNLSG------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEE--ECcCCccCC------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 766665432 22334444444433 222222111 1122344556666666665511100000 000000
Q ss_pred ----hhhhhhhhcCCCCCCCCceEEEecCCCc-cCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCc
Q 010426 156 ----ESREELVLGKLKPCTSIKKLTIKGYGGK-KIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 156 ----~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 229 (511)
..........+..+++|+.|++++|... .+|.++. .+++|+.|++++|......| .+..+++|+.|++++|.
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 0000001112223344444444444432 2333332 34455555555544333333 34445555555555444
Q ss_pred cceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCC--CCCCCCCEEEEEcc
Q 010426 230 KLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPL--CKNSQLESLCIRYC 307 (511)
Q Consensus 230 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~ 307 (511)
....++ ..+..+++|+.|+++++.....+. .....+++|+.++++++ .+.+.+|. ..+++|+.|++++|
T Consensus 344 l~~~~p---~~l~~~~~L~~L~Ls~n~l~~~~p-----~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 344 FSGEIP---KNLGKHNNLTVLDLSTNNLTGEIP-----EGLCSSGNLFKLILFSN-SLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CcCcCC---hHHhCCCCCcEEECCCCeeEeeCC-----hhHhCcCCCCEEECcCC-EecccCCHHHhCCCCCCEEECcCC
Confidence 322222 122234555555555443111110 00123445555555553 33323332 24667777777775
Q ss_pred CCcceeccc--CCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccch
Q 010426 308 DSLTFIARR--KLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAI 385 (511)
Q Consensus 308 ~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~ 385 (511)
.....++.. .+ ++|+.+++++|.....++..+..+++|++|++++|.....++.....++|+.|++ +.+.+...
T Consensus 415 ~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l---s~n~l~~~ 490 (968)
T PLN00113 415 SFSGELPSEFTKL-PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL---SRNQFSGA 490 (968)
T ss_pred EeeeECChhHhcC-CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC---cCCccCCc
Confidence 433222211 12 4777777777755555566666777777777777754444444444567788888 44455555
Q ss_pred hhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCc-ccCccccCCCCCcCEEeEecCCCCccc
Q 010426 386 IHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLK-MLSSKGFQSLTSLEFLWIDDCPNLTSF 464 (511)
Q Consensus 386 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~l~~L~~L~l~~c~~l~~~ 464 (511)
.+..+..+++|+.|++++ |.. ...+|. .+ ..+++|++|++++|. ++ .+| ..+..+++|++|++++|.....+
T Consensus 491 ~~~~~~~l~~L~~L~Ls~-N~l-~~~~p~-~~--~~l~~L~~L~Ls~N~-l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 491 VPRKLGSLSELMQLKLSE-NKL-SGEIPD-EL--SSCKKLVSLDLSHNQ-LSGQIP-ASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred cChhhhhhhccCEEECcC-Ccc-eeeCCh-HH--cCccCCCEEECCCCc-ccccCC-hhHhCcccCCEEECCCCcccccC
Confidence 555677788888888888 443 334554 44 567788888888887 54 444 67777888888888886554455
Q ss_pred CCC-CCCCcccEEEecCCcch
Q 010426 465 PEA-GLPSSILWLNIWSCPKL 484 (511)
Q Consensus 465 ~~~-~~~~~L~~L~l~~c~~l 484 (511)
|.. ...++|+++++++|+-.
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ChhHhcCcccCEEeccCCcce
Confidence 541 12367888888877643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.5e-31 Score=295.63 Aligned_cols=450 Identities=19% Similarity=0.157 Sum_probs=297.1
Q ss_pred CceeccEeecCCCccc-cCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 3 GWKHLRYLNLSDTRIR-NLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
.+++|++|++++|.+. .+|..++.+++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 4677888888888776 567777778888888888775556677777777888888887777445666667777777777
Q ss_pred CceeeecCC-CccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCC----CCCCC---
Q 010426 82 SNFIVGTDT-KSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGS----QFDDS--- 153 (511)
Q Consensus 82 ~~~~~~~~~-~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~--- 153 (511)
++..+.+.. .|..+..+.+|..+ .+..+.+.. ..+..+..+++|+.|++++|......+ .....
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L--~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHL--DLVYNNLTG------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEE--ECcCceecc------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 776665542 22334444444433 222221111 111223444455555555442211000 00000
Q ss_pred cc--hhhhhhhhcCCCCCCCCceEEEecCCCc-cCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCc
Q 010426 154 RN--ESREELVLGKLKPCTSIKKLTIKGYGGK-KIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 154 ~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 229 (511)
+. ..........+..+++|+.|+++++... ..|.++. .+++|+.|++++|.....+| .++.+++|+.|++++|.
T Consensus 290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 00 0111122234567789999999988764 4555554 68999999999998766777 78899999999999987
Q ss_pred cceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCC--CCCCCCCEEEEEcc
Q 010426 230 KLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPL--CKNSQLESLCIRYC 307 (511)
Q Consensus 230 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~ 307 (511)
....++ ..+..+++|+.+++.++....... .....+++|+.|++++| .+.+.+|. ..+++|+.|++++|
T Consensus 368 l~~~~p---~~~~~~~~L~~L~l~~n~l~~~~p-----~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 368 LTGEIP---EGLCSSGNLFKLILFSNSLEGEIP-----KSLGACRSLRRVRLQDN-SFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred eEeeCC---hhHhCcCCCCEEECcCCEecccCC-----HHHhCCCCCCEEECcCC-EeeeECChhHhcCCCCCEEECcCC
Confidence 544444 333447889999998865322221 11346889999999996 44444553 36889999999997
Q ss_pred CCcceeccc-CCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC-CCCCCCceEEEEecccccccch
Q 010426 308 DSLTFIARR-KLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE-GFPTNLVELEIRRVDVKMYKAI 385 (511)
Q Consensus 308 ~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~l~~~ 385 (511)
.....++.. .-.++|+.|++++|.....+|..+ ..++|++|++++|......+.. ..+++|+.|++ +.+.+...
T Consensus 439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L---s~N~l~~~ 514 (968)
T PLN00113 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL---SENKLSGE 514 (968)
T ss_pred cccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEEC---cCCcceee
Confidence 543333321 112599999999997766666544 5689999999999443344432 56789999999 56677766
Q ss_pred hhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccC
Q 010426 386 IHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFP 465 (511)
Q Consensus 386 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~ 465 (511)
.+..+..+++|++|++++ |.. ...+|. .+ ..+++|++|++++|.....+| ..+..+++|+.|++++|+....+|
T Consensus 515 ~p~~~~~l~~L~~L~Ls~-N~l-~~~~p~-~~--~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSH-NQL-SGQIPA-SF--SEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CChHHcCccCCCEEECCC-Ccc-cccCCh-hH--hCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCC
Confidence 667889999999999999 443 334444 44 678999999999999445677 788899999999999987666677
Q ss_pred CCCCCCcccEEEecCC
Q 010426 466 EAGLPSSILWLNIWSC 481 (511)
Q Consensus 466 ~~~~~~~L~~L~l~~c 481 (511)
..+.+.++....+.++
T Consensus 589 ~~~~~~~~~~~~~~~n 604 (968)
T PLN00113 589 STGAFLAINASAVAGN 604 (968)
T ss_pred CcchhcccChhhhcCC
Confidence 6554443333333333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=9.4e-28 Score=228.53 Aligned_cols=380 Identities=21% Similarity=0.215 Sum_probs=222.8
Q ss_pred cEeecCCCccccCCcc-cc-cc-ccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCCcccCcCCCccCCc
Q 010426 8 RYLNLSDTRIRNLPKP-TC-SL-INLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSN 83 (511)
Q Consensus 8 r~L~L~~n~i~~l~~~-~~-~l-~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~ 83 (511)
+.|+.+.+.+..+... +. -+ +.=++|++++| .+..+. ..|.++++|+.+++.+|. +..+|...+...+++.|++
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEee
Confidence 5577788887765321 22 22 34566999999 665554 557899999999999999 8999887777888888887
Q ss_pred eeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhh
Q 010426 84 FIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVL 163 (511)
Q Consensus 84 ~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (511)
.++.+.+. .- ..+..++.|+.||++.| .......
T Consensus 133 ~~N~I~sv--~s-----------------------------e~L~~l~alrslDLSrN---------------~is~i~~ 166 (873)
T KOG4194|consen 133 RHNLISSV--TS-----------------------------EELSALPALRSLDLSRN---------------LISEIPK 166 (873)
T ss_pred eccccccc--cH-----------------------------HHHHhHhhhhhhhhhhc---------------hhhcccC
Confidence 77665443 00 22444467888888877 1222223
Q ss_pred cCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCC
Q 010426 164 GKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCS 241 (511)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 241 (511)
..+..-.++++|++++|.++.+...-++ .+.+|..|.+++|. ++.+| .|..+++|+.|++..|. ++.+.+ ..+
T Consensus 167 ~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-irive~--ltF 241 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRIVEG--LTF 241 (873)
T ss_pred CCCCCCCCceEEeecccccccccccccc-ccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eeeehh--hhh
Confidence 4555556899999999998887655444 67799999999997 56666 67789999999998876 332210 122
Q ss_pred CCCCCCCeEEcCCCC--CchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCC
Q 010426 242 NPFQSLETLWFEDLP--EWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLP 319 (511)
Q Consensus 242 ~~~~~L~~L~l~~~~--~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 319 (511)
..+++|+.|.+.... .+++-. +.++.+ ++.|+++. +.+..+..+++.
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~-------Fy~l~k-----------------------me~l~L~~-N~l~~vn~g~lf 290 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGA-------FYGLEK-----------------------MEHLNLET-NRLQAVNEGWLF 290 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcc-------eeeecc-----------------------cceeeccc-chhhhhhccccc
Confidence 234444444444322 111111 233444 44444444 234444444333
Q ss_pred --CCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCC--CCCCCceEEEEecccccccchhhhhhccCCc
Q 010426 320 --SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEG--FPTNLVELEIRRVDVKMYKAIIHWGLHRLTS 395 (511)
Q Consensus 320 --~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~ 395 (511)
+.|+.|++++|..-..-++.+..+++|++|++++| .++.++... .+..|++|.+ +-|.++++....|.++++
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnL---s~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNL---SHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcc---cccchHHHHhhHHHHhhh
Confidence 45555556555222222345555666666666666 555555442 2455666666 455555555555666666
Q ss_pred ccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC-CCccc
Q 010426 396 LRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL-PSSIL 474 (511)
Q Consensus 396 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~ 474 (511)
|+.|++++ +.. --.+.........+++|+.|++.||. ++.|+..+|..++.|++|+|.++ -|..+....+ +..|+
T Consensus 367 L~~LdLr~-N~l-s~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk 442 (873)
T KOG4194|consen 367 LHKLDLRS-NEL-SWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMELK 442 (873)
T ss_pred hhhhcCcC-CeE-EEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCC-cceeecccccccchhh
Confidence 66666666 221 11111101111346666666666666 66666666666666777766663 3333333233 22455
Q ss_pred EEEec
Q 010426 475 WLNIW 479 (511)
Q Consensus 475 ~L~l~ 479 (511)
+|.+.
T Consensus 443 ~Lv~n 447 (873)
T KOG4194|consen 443 ELVMN 447 (873)
T ss_pred hhhhc
Confidence 55543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.2e-27 Score=224.12 Aligned_cols=341 Identities=18% Similarity=0.185 Sum_probs=226.4
Q ss_pred ccEeecCCCccccC-CccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCc-ccCcCCCccCCce
Q 010426 7 LRYLNLSDTRIRNL-PKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALSNF 84 (511)
Q Consensus 7 Lr~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~~ 84 (511)
-+.|++++|.++.+ +..|.++++|+.+++.+| .+..+|........|+.|++.+|. +.++..+ +..++.|+.||++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhh
Confidence 46799999999977 467999999999999999 999999855556679999999999 8777644 8999999999987
Q ss_pred eeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhc
Q 010426 85 IVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLG 164 (511)
Q Consensus 85 ~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (511)
-+.+...+. ..+-...++++|++++|. .......
T Consensus 158 rN~is~i~~-------------------------------~sfp~~~ni~~L~La~N~---------------It~l~~~ 191 (873)
T KOG4194|consen 158 RNLISEIPK-------------------------------PSFPAKVNIKKLNLASNR---------------ITTLETG 191 (873)
T ss_pred hchhhcccC-------------------------------CCCCCCCCceEEeecccc---------------ccccccc
Confidence 766543310 112334578899998882 2222233
Q ss_pred CCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCCC
Q 010426 165 KLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCSN 242 (511)
Q Consensus 165 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 242 (511)
.|..+.+|..|.+++|.+..+|...+ +.+++|+.|++..|. +.... .|.++++|+.|.+..|. +..+. +..+-
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~-I~kL~--DG~Fy 266 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRND-ISKLD--DGAFY 266 (873)
T ss_pred cccccchheeeecccCcccccCHHHh-hhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcC-ccccc--Cccee
Confidence 55666789999999999999987665 258999999999887 44443 67899999999998876 22222 12233
Q ss_pred CCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcC--CCCCCCCCCCEEEEEccCCcceecccCCC-
Q 010426 243 PFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGI--LPLCKNSQLESLCIRYCDSLTFIARRKLP- 319 (511)
Q Consensus 243 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~- 319 (511)
.+.++++|+++...-.. . ......++.+|+.|+++. +.++.. -.+...++|+.|++++ +.++.++.+.+.
T Consensus 267 ~l~kme~l~L~~N~l~~-v----n~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQA-V----NEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRV 339 (873)
T ss_pred eecccceeecccchhhh-h----hcccccccchhhhhccch-hhhheeecchhhhcccceeEeccc-cccccCChhHHHH
Confidence 37788888888754211 0 011135678888888887 454421 1233667777777777 456666655554
Q ss_pred -CCcCeEeeccCcccccccc-cccCCCCcCeEEecCCCC---CcccC-CCCCCCCCceEEEEecccccccchhhhhhccC
Q 010426 320 -SSLKWLEIENCEKLESLPN-DMHELNYLQHLCINRCPS---IVRFP-EEGFPTNLVELEIRRVDVKMYKAIIHWGLHRL 393 (511)
Q Consensus 320 -~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~---l~~~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l 393 (511)
+.|++|++++| .++.+.. .+..+++|++|++++|.. +++-. ....+++|+.|++ ..|+++.++...|.++
T Consensus 340 L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l---~gNqlk~I~krAfsgl 415 (873)
T KOG4194|consen 340 LSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL---TGNQLKSIPKRAFSGL 415 (873)
T ss_pred HHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee---cCceeeecchhhhccC
Confidence 56777777777 4444433 345667777777766621 11111 1123566666666 4555555555566666
Q ss_pred CcccEEEEecCCCCCccccCc
Q 010426 394 TSLRRLWIEGCDDDEAECFPD 414 (511)
Q Consensus 394 ~~L~~L~l~~~~~~~~~~~~~ 414 (511)
+.||.|++.+ +. +.++..
T Consensus 416 ~~LE~LdL~~--Na-iaSIq~ 433 (873)
T KOG4194|consen 416 EALEHLDLGD--NA-IASIQP 433 (873)
T ss_pred cccceecCCC--Cc-ceeecc
Confidence 6666666666 22 555544
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3.8e-24 Score=237.26 Aligned_cols=361 Identities=22% Similarity=0.254 Sum_probs=228.0
Q ss_pred ccccccccccEEeccCcc------ccccccccccCcC-ccceEEecCcccccccCCcccCcCCCccCCceeeecCCCccC
Q 010426 22 KPTCSLINLQVLLLRDCY------YLLKLPSKLRNLI-NLRHLDIMGAYLIKEIPFGMKELKNLQALSNFIVGTDTKSSG 94 (511)
Q Consensus 22 ~~~~~l~~L~~L~L~~n~------~~~~l~~~~~~l~-~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~~~~~~~~~~ 94 (511)
.+|..+++|+.|.+.++. ....+|..+..++ +|+.|.+.++. +..+|..+ ...+|+.|++..+.+...+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~l~~L~~- 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSKLEKLWD- 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcccccccc-
Confidence 558888899998886552 1234666676664 58999998887 88888776 45777777654432211100
Q ss_pred ccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCce
Q 010426 95 LKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKK 174 (511)
Q Consensus 95 ~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 174 (511)
.+..+++|+.++++++
T Consensus 629 -------------------------------~~~~l~~Lk~L~Ls~~--------------------------------- 644 (1153)
T PLN03210 629 -------------------------------GVHSLTGLRNIDLRGS--------------------------------- 644 (1153)
T ss_pred -------------------------------ccccCCCCCEEECCCC---------------------------------
Confidence 0112233444444332
Q ss_pred EEEecCC-CccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEc
Q 010426 175 LTIKGYG-GKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWF 252 (511)
Q Consensus 175 L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 252 (511)
. ...+|. +. .+++|+.|++++|..+..+| .++.+++|+.|++++|..+..++.+. .+++|+.|++
T Consensus 645 ------~~l~~ip~-ls--~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~L 711 (1153)
T PLN03210 645 ------KNLKEIPD-LS--MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI----NLKSLYRLNL 711 (1153)
T ss_pred ------CCcCcCCc-cc--cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC----CCCCCCEEeC
Confidence 2 222232 11 34555555555555555555 45555555566655555555544211 2555555665
Q ss_pred CCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCC-CCCCCCEEEEEccCCcc------eec--ccCCCCCcC
Q 010426 253 EDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLC-KNSQLESLCIRYCDSLT------FIA--RRKLPSSLK 323 (511)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~~~~l~------~~~--~~~~~~~L~ 323 (511)
.+|..+..+. ...++|++|+++++ .+. .+|.. .+++|++|.+.++.... .+. ....+++|+
T Consensus 712 sgc~~L~~~p--------~~~~nL~~L~L~~n-~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 712 SGCSRLKSFP--------DISTNISWLDLDET-AIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCCCCccccc--------cccCCcCeeecCCC-ccc-cccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 5554443322 12345666666653 333 33322 45566666665532110 000 012236899
Q ss_pred eEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEec
Q 010426 324 WLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 324 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
.|++++|..+..+|..+.++++|++|++++|..++.+|....+++|+.|+++ +|..+...+. ..++|+.|++++
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls--~c~~L~~~p~----~~~nL~~L~Ls~ 855 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS--GCSRLRTFPD----ISTNISDLNLSR 855 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC--CCCccccccc----cccccCEeECCC
Confidence 9999999888889999999999999999999888888876678899999998 8888765442 246899999998
Q ss_pred CCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCCC-------------
Q 010426 404 CDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLP------------- 470 (511)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~------------- 470 (511)
+. +..+|. .. ..+++|++|++++|++++.++ ..+..+++|+.+++++|+.++.++..+.+
T Consensus 856 --n~-i~~iP~-si--~~l~~L~~L~L~~C~~L~~l~-~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~ 928 (1153)
T PLN03210 856 --TG-IEEVPW-WI--EKFSNLSFLDMNGCNNLQRVS-LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSK 928 (1153)
T ss_pred --CC-CccChH-HH--hcCCCCCEEECCCCCCcCccC-cccccccCCCeeecCCCcccccccCCCCchhhhhhccccccc
Confidence 34 778876 44 678999999999999999988 56778899999999999998866432222
Q ss_pred -CcccEEEecCCcchH
Q 010426 471 -SSILWLNIWSCPKLE 485 (511)
Q Consensus 471 -~~L~~L~l~~c~~l~ 485 (511)
++...+.+.+|.+|.
T Consensus 929 ~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 929 LPSTVCINFINCFNLD 944 (1153)
T ss_pred CCchhccccccccCCC
Confidence 223445667787775
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.1e-28 Score=224.91 Aligned_cols=442 Identities=19% Similarity=0.218 Sum_probs=266.9
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
.++..|.+|++.+|.+..+|.+++.+.+++.|+.++| .+..+|++++.+.+|+.|+.++|. +.++|++++.+..+..|
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDL 142 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhh
Confidence 3567788899999999999999999999999999998 888899889999999999999998 88888899999999999
Q ss_pred CceeeecCCCccCccccccccccCceEEEccc----------------cCCCChhhhHHhccccccccceeEEeeecccc
Q 010426 82 SNFIVGTDTKSSGLKDLKSLAFVGGELSISGL----------------ENVIYPWEASEAMLCEKQYLEALSLQWRSQLQ 145 (511)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~----------------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 145 (511)
+..++.+.+.|..+..+..+..+ .+..+.+ +...+.-...+..++.+..|+.|+++.|
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l--~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N---- 216 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKL--DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN---- 216 (565)
T ss_pred hccccccccCchHHHHHHHHHHh--hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc----
Confidence 98888887776666655554433 1111111 1111222223333444444555554444
Q ss_pred cCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEE
Q 010426 146 WGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLT 224 (511)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~ 224 (511)
....++.|..|+.|..++++.|.+..+|.... ..++++.+|++..|+ +..+| .+..+.+|+.||
T Consensus 217 -------------ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~-~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 217 -------------KIRFLPEFPGCSLLKELHVGENQIEMLPAEHL-KHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLD 281 (565)
T ss_pred -------------ccccCCCCCccHHHHHHHhcccHHHhhHHHHh-cccccceeeeccccc-cccCchHHHHhhhhhhhc
Confidence 22234456666667777776666666665443 256778888888876 56666 566677788888
Q ss_pred ecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCee----eeccCCC--------cCcCCC
Q 010426 225 VKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLREL----SILNCSK--------FSGILP 292 (511)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L----~l~~c~~--------l~~~~~ 292 (511)
+++|. ++..+ ..++++ .|+.|.+.+.+--+.....+.......++.|+.- .++.... ....+|
T Consensus 282 lSNN~-is~Lp---~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~ 356 (565)
T KOG0472|consen 282 LSNND-ISSLP---YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP 356 (565)
T ss_pred ccCCc-cccCC---cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence 87765 55554 344446 7777777776532211111111111122222210 0011000 001111
Q ss_pred C-CCCCCCCEEEEEccCCcceecccCCC----CCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC-CCC
Q 010426 293 L-CKNSQLESLCIRYCDSLTFIARRKLP----SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE-GFP 366 (511)
Q Consensus 293 ~-~~~~~L~~L~l~~~~~l~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~ 366 (511)
. ....+.+.|+++. ..++.+|.+.|. .-...+++++| .+.++|..+..+..+.+.-+..+..+.-.+.. ..+
T Consensus 357 ~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l 434 (565)
T KOG0472|consen 357 DIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL 434 (565)
T ss_pred chhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh
Confidence 1 2456677888877 567777665444 23678888888 66677776666655554444333233333332 445
Q ss_pred CCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCC
Q 010426 367 TNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQS 446 (511)
Q Consensus 367 ~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 446 (511)
++|..|++ +.+-+.+++. .+..+..|+.|+++. +. +..+|. .. ..+..++++-.+++. ++.++..++.+
T Consensus 435 ~kLt~L~L---~NN~Ln~LP~-e~~~lv~Lq~LnlS~--Nr-Fr~lP~-~~--y~lq~lEtllas~nq-i~~vd~~~l~n 503 (565)
T KOG0472|consen 435 QKLTFLDL---SNNLLNDLPE-EMGSLVRLQTLNLSF--NR-FRMLPE-CL--YELQTLETLLASNNQ-IGSVDPSGLKN 503 (565)
T ss_pred hcceeeec---ccchhhhcch-hhhhhhhhheecccc--cc-cccchH-HH--hhHHHHHHHHhcccc-ccccChHHhhh
Confidence 66666676 4444444443 345555677777777 23 556664 22 445556666556566 77776666777
Q ss_pred CCCcCEEeEecCCCCcccCC-CCCCCcccEEEecCCcchH
Q 010426 447 LTSLEFLWIDDCPNLTSFPE-AGLPSSILWLNIWSCPKLE 485 (511)
Q Consensus 447 l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~ 485 (511)
+.+|..|++.+ +.+..+|. -|-..+|++|+++|+|--.
T Consensus 504 m~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhhcceeccCC-CchhhCChhhccccceeEEEecCCccCC
Confidence 77777777776 45555544 3445677777777766443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=5.6e-27 Score=224.97 Aligned_cols=365 Identities=19% Similarity=0.241 Sum_probs=226.5
Q ss_pred CCceeccEeecCCCccc--cCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCc
Q 010426 2 SGWKHLRYLNLSDTRIR--NLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQ 79 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 79 (511)
+-++..|-.++++|.++ ..|.+...+..++-|.|... .+..+|+.++.|++|++|.+++|+ +.++..++..|+.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhH
Confidence 35778888999999997 67988999999999999998 899999999999999999999999 778777788899999
Q ss_pred cCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhh
Q 010426 80 ALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESRE 159 (511)
Q Consensus 80 ~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 159 (511)
.+.+..+..+.. +++..+.++..|+.||++.| .-
T Consensus 82 sv~~R~N~LKns------------------------------GiP~diF~l~dLt~lDLShN----------------qL 115 (1255)
T KOG0444|consen 82 SVIVRDNNLKNS------------------------------GIPTDIFRLKDLTILDLSHN----------------QL 115 (1255)
T ss_pred HHhhhccccccC------------------------------CCCchhcccccceeeecchh----------------hh
Confidence 887554433221 11223455567888888877 22
Q ss_pred hhhhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCC
Q 010426 160 ELVLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGE 238 (511)
Q Consensus 160 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~ 238 (511)
......+...+++-.|.+++|.+.++|..++. ++..|-.|++++|+ +..+| .+..+.+|+.|++++|+-.. ...
T Consensus 116 ~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~h-fQL-- 190 (1255)
T KOG0444|consen 116 REVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNH-FQL-- 190 (1255)
T ss_pred hhcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhH-HHH--
Confidence 23445566677888999999999999876654 67888899999987 56655 88899999999999887211 100
Q ss_pred CCCCCCCCCCeEEcCCCCC-chhhhhhccccccccCCCcCeeeeccCCCcCcCCCCC--CCCCCCEEEEEccCCcceecc
Q 010426 239 HCSNPFQSLETLWFEDLPE-WEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLC--KNSQLESLCIRYCDSLTFIAR 315 (511)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~ 315 (511)
..+-++++|+.|.+++... +..+. .....+.+|+.++++. +.+. .+|.. .+++|+.|++++ +.++.+..
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~P-----tsld~l~NL~dvDlS~-N~Lp-~vPecly~l~~LrrLNLS~-N~iteL~~ 262 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIP-----TSLDDLHNLRDVDLSE-NNLP-IVPECLYKLRNLRRLNLSG-NKITELNM 262 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCC-----Cchhhhhhhhhccccc-cCCC-cchHHHhhhhhhheeccCc-Cceeeeec
Confidence 0111133333344433221 11111 1123455666666655 4444 44433 556666666666 34444432
Q ss_pred c--CCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccC
Q 010426 316 R--KLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRL 393 (511)
Q Consensus 316 ~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l 393 (511)
. .. .+|++|++++| .++.+|..+..++.|+.|++.+| .++- ...+.+++++
T Consensus 263 ~~~~W-~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N-kL~F------------------------eGiPSGIGKL 315 (1255)
T KOG0444|consen 263 TEGEW-ENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN-KLTF------------------------EGIPSGIGKL 315 (1255)
T ss_pred cHHHH-hhhhhhccccc-hhccchHHHhhhHHHHHHHhccC-cccc------------------------cCCccchhhh
Confidence 1 11 36666666666 55666666666666666666555 2221 1122344444
Q ss_pred CcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCc
Q 010426 394 TSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLT 462 (511)
Q Consensus 394 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~ 462 (511)
..|+.+..++ +. +.-.|. .. +.|+.|+.|.++.|. +-++| +++.-++.|+.|++..+|++.
T Consensus 316 ~~Levf~aan--N~-LElVPE-gl--cRC~kL~kL~L~~Nr-LiTLP-eaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 IQLEVFHAAN--NK-LELVPE-GL--CRCVKLQKLKLDHNR-LITLP-EAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhHHHHhhc--cc-cccCch-hh--hhhHHHHHhcccccc-eeech-hhhhhcCCcceeeccCCcCcc
Confidence 5555544444 22 344443 22 344555555555544 44444 444455555555555555554
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.9e-22 Score=223.72 Aligned_cols=291 Identities=19% Similarity=0.250 Sum_probs=231.6
Q ss_pred CCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCCCCCCC
Q 010426 169 CTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLE 248 (511)
Q Consensus 169 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 248 (511)
+.+|+.|++.++....++..+. .+++|+.|+++++..+..+|.++.+++|+.|++++|..+..++ ..++.+++|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~--~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp---~si~~L~~L~ 684 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVH--SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP---SSIQYLNKLE 684 (1153)
T ss_pred ccCCcEEECcCccccccccccc--cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc---hhhhccCCCC
Confidence 3578888888877777665554 6899999999999888899999999999999999999888777 4556689999
Q ss_pred eEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeec
Q 010426 249 TLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIE 328 (511)
Q Consensus 249 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 328 (511)
.|++.+|..++.+. . ...+++|+.|++++|..+. .+|. ...+|+.|+++++ .++.++...-.++|+.|.+.
T Consensus 685 ~L~L~~c~~L~~Lp--~----~i~l~sL~~L~Lsgc~~L~-~~p~-~~~nL~~L~L~~n-~i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 685 DLDMSRCENLEILP--T----GINLKSLYRLNLSGCSRLK-SFPD-ISTNISWLDLDET-AIEEFPSNLRLENLDELILC 755 (1153)
T ss_pred EEeCCCCCCcCccC--C----cCCCCCCCEEeCCCCCCcc-cccc-ccCCcCeeecCCC-cccccccccccccccccccc
Confidence 99999998877665 1 1257899999999998776 5654 3578999999985 46666643223588889888
Q ss_pred cCcccc------cc-cccccCCCCcCeEEecCCCCCcccCCC-CCCCCCceEEEEecccccccchhhhhhccCCcccEEE
Q 010426 329 NCEKLE------SL-PNDMHELNYLQHLCINRCPSIVRFPEE-GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLW 400 (511)
Q Consensus 329 ~~~~l~------~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~ 400 (511)
++.... .+ +.....+++|++|++++|..+..+|.. +.+++|+.|++. +|+.+..++.. ..+++|+.|+
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls--~C~~L~~LP~~--~~L~sL~~L~ 831 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE--NCINLETLPTG--INLESLESLD 831 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC--CCCCcCeeCCC--CCccccCEEE
Confidence 763211 11 122345689999999999888877754 678999999999 89888877642 2789999999
Q ss_pred EecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCC-CCCCcccEEEec
Q 010426 401 IEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEA-GLPSSILWLNIW 479 (511)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~ 479 (511)
+++ |.. +..+|. .+++|++|++++|. ++.+| ..+..+++|+.|++.+|++++.+|.. ...++|+.++++
T Consensus 832 Ls~-c~~-L~~~p~------~~~nL~~L~Ls~n~-i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 832 LSG-CSR-LRTFPD------ISTNISDLNLSRTG-IEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred CCC-CCc-cccccc------cccccCEeECCCCC-CccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 999 776 888874 45789999999987 99998 77899999999999999999998762 224789999999
Q ss_pred CCcchHHH
Q 010426 480 SCPKLEKV 487 (511)
Q Consensus 480 ~c~~l~~~ 487 (511)
+|++|+..
T Consensus 902 ~C~~L~~~ 909 (1153)
T PLN03210 902 DCGALTEA 909 (1153)
T ss_pred CCcccccc
Confidence 99999754
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=4e-25 Score=221.42 Aligned_cols=407 Identities=21% Similarity=0.242 Sum_probs=249.5
Q ss_pred eccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCcee
Q 010426 6 HLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFI 85 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~ 85 (511)
+|+.|++++|+++..|..+..+.+|+.|+++.| .+...|.+..++.+|++|+|.+|. +..+|.++..+++|+.|+++.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccch
Confidence 499999999999999999999999999999999 999999889999999999999999 999999999999999999999
Q ss_pred eecCCCccCccccccccccCceEEEc-cccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhc
Q 010426 86 VGTDTKSSGLKDLKSLAFVGGELSIS-GLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLG 164 (511)
Q Consensus 86 ~~~~~~~~~~~~l~~L~~l~~~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (511)
+.....|..+..+.....+. .+.+ ..+ .++.. .++.+++..+ .....+..
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~--~s~N~~~~-----------~lg~~-~ik~~~l~~n---------------~l~~~~~~ 174 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELA--ASNNEKIQ-----------RLGQT-SIKKLDLRLN---------------VLGGSFLI 174 (1081)
T ss_pred hccCCCchhHHhhhHHHHHh--hhcchhhh-----------hhccc-cchhhhhhhh---------------hcccchhc
Confidence 88877766666555444221 1100 000 01111 1333333333 00000111
Q ss_pred CCCCCCCCc-eEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCC
Q 010426 165 KLKPCTSIK-KLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNP 243 (511)
Q Consensus 165 ~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 243 (511)
.+ ..++ .++++.|...... .. .+.+|+.+....+.. ..+. -.-++|+.|+...|...+....+.
T Consensus 175 ~i---~~l~~~ldLr~N~~~~~d--ls--~~~~l~~l~c~rn~l-s~l~--~~g~~l~~L~a~~n~l~~~~~~p~----- 239 (1081)
T KOG0618|consen 175 DI---YNLTHQLDLRYNEMEVLD--LS--NLANLEVLHCERNQL-SELE--ISGPSLTALYADHNPLTTLDVHPV----- 239 (1081)
T ss_pred ch---hhhheeeecccchhhhhh--hh--hccchhhhhhhhccc-ceEE--ecCcchheeeeccCcceeeccccc-----
Confidence 11 1222 3555555443111 11 344555555554431 1111 123556666666665443332222
Q ss_pred CCCCCeEEcCCC--CCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCC-------------------------CC
Q 010426 244 FQSLETLWFEDL--PEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLC-------------------------KN 296 (511)
Q Consensus 244 ~~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------------------------~~ 296 (511)
...|++++++.. ..++.|. ..+.+|+.+.+.+ +.+. .+|.. +.
T Consensus 240 p~nl~~~dis~n~l~~lp~wi--------~~~~nle~l~~n~-N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~ 309 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWI--------GACANLEALNANH-NRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGL 309 (1081)
T ss_pred cccceeeecchhhhhcchHHH--------HhcccceEecccc-hhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCccccc
Confidence 455666666542 3455553 3456666666655 2332 22221 24
Q ss_pred CCCCEEEEEccCCcceecccCCC---CCcCeEeeccCccccccc-ccccCCCCcCeEEecCCCCCcc--cCCCCCCCCCc
Q 010426 297 SQLESLCIRYCDSLTFIARRKLP---SSLKWLEIENCEKLESLP-NDMHELNYLQHLCINRCPSIVR--FPEEGFPTNLV 370 (511)
Q Consensus 297 ~~L~~L~l~~~~~l~~~~~~~~~---~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~L~ 370 (511)
.+|++|++.. +.+.+++...+. ..++.++.+.+ .+...| ..-..++.|+.|++.+| .+++ +|....++.|+
T Consensus 310 ~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 310 KSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred ceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcC-cccccchhhhcccccee
Confidence 4455555554 233333332111 22333333333 222222 12235566777777777 4443 34446677888
Q ss_pred eEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCc
Q 010426 371 ELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSL 450 (511)
Q Consensus 371 ~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L 450 (511)
.|++ +.|.+...+...+.+++.|+.|.+++ +. ++.+|. .. ..++.|++|...+|. +..+| .+..++.|
T Consensus 387 VLhL---syNrL~~fpas~~~kle~LeeL~LSG--Nk-L~~Lp~-tv--a~~~~L~tL~ahsN~-l~~fP--e~~~l~qL 454 (1081)
T KOG0618|consen 387 VLHL---SYNRLNSFPASKLRKLEELEELNLSG--NK-LTTLPD-TV--ANLGRLHTLRAHSNQ-LLSFP--ELAQLPQL 454 (1081)
T ss_pred eeee---cccccccCCHHHHhchHHhHHHhccc--ch-hhhhhH-HH--HhhhhhHHHhhcCCc-eeech--hhhhcCcc
Confidence 8888 67777777777778888888888888 55 788886 55 677888888888877 77777 67788999
Q ss_pred CEEeEecCCCCcccCC-CCCC-CcccEEEecCCcch
Q 010426 451 EFLWIDDCPNLTSFPE-AGLP-SSILWLNIWSCPKL 484 (511)
Q Consensus 451 ~~L~l~~c~~l~~~~~-~~~~-~~L~~L~l~~c~~l 484 (511)
+.++++. ++++.+-. +..| |+|++|+++|++.+
T Consensus 455 ~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 455 KVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred eEEeccc-chhhhhhhhhhCCCcccceeeccCCccc
Confidence 9999976 67776422 3456 89999999998854
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=4.6e-26 Score=208.01 Aligned_cols=404 Identities=22% Similarity=0.260 Sum_probs=272.7
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
.++.+|+.|+.+.|++..+|++++.+-.|+.|+..+| .+..+|++++.+.+|..|++.+|. +..+|+..-++++|++|
T Consensus 111 ~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhc
Confidence 3456677777777777777777777777777777777 677777777778888888888877 77777664458888888
Q ss_pred CceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhh
Q 010426 82 SNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREEL 161 (511)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (511)
+...+...+.|..+..++.|.-+ .+..+++... ..+.++..|.++..+.| .....
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~L--yL~~Nki~~l--------Pef~gcs~L~Elh~g~N---------------~i~~l 243 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELL--YLRRNKIRFL--------PEFPGCSLLKELHVGEN---------------QIEML 243 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHH--HhhhcccccC--------CCCCccHHHHHHHhccc---------------HHHhh
Confidence 87777666666666666665544 3444444333 23566677888877666 23333
Q ss_pred hhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceE---eccC
Q 010426 162 VLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKS---MGYG 237 (511)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~---~~~~ 237 (511)
..+..+.++++..|+++.|..+++|..+. .+.+|++|++++|. ++.+| .++.+ +|+.|-+.||+--+. +..+
T Consensus 244 pae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred HHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence 33455678899999999999999998876 57899999999998 56666 88999 999999999863211 1000
Q ss_pred CCCCCCCCCCCeEEcC----CC----------CCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCC-----CCCC
Q 010426 238 EHCSNPFQSLETLWFE----DL----------PEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLC-----KNSQ 298 (511)
Q Consensus 238 ~~~~~~~~~L~~L~l~----~~----------~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-----~~~~ 298 (511)
. . -.-|++|.=. +. .....|. ++ ....+...+.|++++ .+++ .+|.. .-.-
T Consensus 320 g-T---~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~--~~--~~~~~i~tkiL~~s~-~qlt-~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 320 G-T---QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES--FP--DIYAIITTKILDVSD-KQLT-LVPDEVFEAAKSEI 389 (565)
T ss_pred c-H---HHHHHHHHHhhccCCCCCCcccccccCCCCCCc--cc--chhhhhhhhhhcccc-cccc-cCCHHHHHHhhhcc
Confidence 0 0 0111111110 00 0011111 11 123445677788877 5666 45533 2333
Q ss_pred CCEEEEEccCCcceecccCCC-CC-cCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC-CCCCCCceEEEE
Q 010426 299 LESLCIRYCDSLTFIARRKLP-SS-LKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE-GFPTNLVELEIR 375 (511)
Q Consensus 299 L~~L~l~~~~~l~~~~~~~~~-~~-L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~ 375 (511)
+...+++. +.+.++|..-.. +. ...+.+++| ++.-+|..++.+++|..|++++| .+.++|.. +.+..||.|+++
T Consensus 390 Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn-~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 390 VTSVNFSK-NQLCELPKRLVELKELVTDLVLSNN-KISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLS 466 (565)
T ss_pred eEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcC-ccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccc
Confidence 66778888 456666542111 23 333444444 77778888899999999999999 78888866 566789999995
Q ss_pred ecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeE
Q 010426 376 RVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWI 455 (511)
Q Consensus 376 ~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l 455 (511)
.+.+...+ ..++.+..|+.+-.++ ++ +...+. .. ...+.+|.+||+.+|. +..+| .+++++.+|++|+|
T Consensus 467 ---~NrFr~lP-~~~y~lq~lEtllas~--nq-i~~vd~-~~-l~nm~nL~tLDL~nNd-lq~IP-p~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 467 ---FNRFRMLP-ECLYELQTLETLLASN--NQ-IGSVDP-SG-LKNMRNLTTLDLQNND-LQQIP-PILGNMTNLRHLEL 535 (565)
T ss_pred ---ccccccch-HHHhhHHHHHHHHhcc--cc-ccccCh-HH-hhhhhhcceeccCCCc-hhhCC-hhhccccceeEEEe
Confidence 44544433 2445666777776666 55 888876 31 2678999999999988 99999 89999999999999
Q ss_pred ecCCC
Q 010426 456 DDCPN 460 (511)
Q Consensus 456 ~~c~~ 460 (511)
+|+|.
T Consensus 536 ~gNpf 540 (565)
T KOG0472|consen 536 DGNPF 540 (565)
T ss_pred cCCcc
Confidence 99643
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1e-23 Score=211.38 Aligned_cols=439 Identities=21% Similarity=0.194 Sum_probs=265.1
Q ss_pred eecCCCccccCCccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCCcccCcCCCccCCceeeec
Q 010426 10 LNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFIVGT 88 (511)
Q Consensus 10 L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~~~~ 88 (511)
++++...+.-||..+..-..++.|+++.| .+...| +.+.+.-+|+.|++++|. +...|..+..+.+|+.|+++.+.+
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N-~~l~~pl~~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRN-SLLSRPLEFVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhcccc-ccccCchHHhhheeeeEEeeccccc-cccCCchhhhHHHHhhcccchhhH
Confidence 34444445555544444444555555555 333333 223333335555555555 555555555555555555555555
Q ss_pred CCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhh----hhhc
Q 010426 89 DTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREE----LVLG 164 (511)
Q Consensus 89 ~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 164 (511)
...|.++..+.++..+ .+.-+.. ...+..+..+.+|+.|++++|+|.+...-++......... ....
T Consensus 81 ~~vp~s~~~~~~l~~l--nL~~n~l-------~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~ 151 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYL--NLKNNRL-------QSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQ 151 (1081)
T ss_pred hhCchhhhhhhcchhh--eeccchh-------hcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhh
Confidence 5544444444444433 1211111 1222344555666677777664433322211111000000 0011
Q ss_pred CCCCCCCCceEEEecCCC-ccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCC
Q 010426 165 KLKPCTSIKKLTIKGYGG-KKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNP 243 (511)
Q Consensus 165 ~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 243 (511)
.++.. .++.+++..+.. ..++..+. .++. .|++..|... ...+..+++|+.|....+....-.- .
T Consensus 152 ~lg~~-~ik~~~l~~n~l~~~~~~~i~--~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~-------~ 217 (1081)
T KOG0618|consen 152 RLGQT-SIKKLDLRLNVLGGSFLIDIY--NLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELEI-------S 217 (1081)
T ss_pred hhccc-cchhhhhhhhhcccchhcchh--hhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEEe-------c
Confidence 11111 255566655543 33443332 2333 5899888743 4466778888888887766332211 1
Q ss_pred CCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCC--CCCCCCEEEEEccCCcceecccCCC-C
Q 010426 244 FQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLC--KNSQLESLCIRYCDSLTFIARRKLP-S 320 (511)
Q Consensus 244 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~-~ 320 (511)
-++|+.|+.++++..+... ...-.+|+.+++++ +++. .+|.+ .+.+|+.+.+..+ .+..++...++ .
T Consensus 218 g~~l~~L~a~~n~l~~~~~-------~p~p~nl~~~dis~-n~l~-~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~ 287 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDV-------HPVPLNLQYLDISH-NNLS-NLPEWIGACANLEALNANHN-RLVALPLRISRIT 287 (1081)
T ss_pred CcchheeeeccCcceeecc-------ccccccceeeecch-hhhh-cchHHHHhcccceEecccch-hHHhhHHHHhhhh
Confidence 5788899998887543222 23456889999988 4555 55543 6889999999884 45555544333 5
Q ss_pred CcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC---------------------------CCCCCCceEE
Q 010426 321 SLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE---------------------------GFPTNLVELE 373 (511)
Q Consensus 321 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---------------------------~~~~~L~~L~ 373 (511)
+|+.+.+..| .+..+|.....+++|++|++..| .+.++|.. ..++.|+.|.
T Consensus 288 ~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 288 SLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 7888888877 67777777777888888888877 55555442 1124555565
Q ss_pred EEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEE
Q 010426 374 IRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFL 453 (511)
Q Consensus 374 l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L 453 (511)
+ ..|.+++-....+.+++.|+.|++++ +. +..||.-.. ..+..|++|++|||. ++.+| ..+..+..|++|
T Consensus 366 l---anN~Ltd~c~p~l~~~~hLKVLhLsy--Nr-L~~fpas~~--~kle~LeeL~LSGNk-L~~Lp-~tva~~~~L~tL 435 (1081)
T KOG0618|consen 366 L---ANNHLTDSCFPVLVNFKHLKVLHLSY--NR-LNSFPASKL--RKLEELEELNLSGNK-LTTLP-DTVANLGRLHTL 435 (1081)
T ss_pred H---hcCcccccchhhhccccceeeeeecc--cc-cccCCHHHH--hchHHhHHHhcccch-hhhhh-HHHHhhhhhHHH
Confidence 5 44555555444688999999999999 55 899996333 788999999999999 99999 889999999999
Q ss_pred eEecCCCCcccCCCCCCCcccEEEecCCcchHHHHhcCCCCCcc
Q 010426 454 WIDDCPNLTSFPEAGLPSSILWLNIWSCPKLEKVCKWHTKEGSK 497 (511)
Q Consensus 454 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 497 (511)
...+ +.+..+|+....+.|+.+|++. ..|+.........|+.
T Consensus 436 ~ahs-N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~ 477 (1081)
T KOG0618|consen 436 RAHS-NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPN 477 (1081)
T ss_pred hhcC-CceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcc
Confidence 9988 7888899766678999999986 6777665555455543
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=8.3e-24 Score=203.36 Aligned_cols=368 Identities=18% Similarity=0.238 Sum_probs=262.1
Q ss_pred cccccccEEeccCcccc-ccccccccCcCccceEEecCcccccccCCcccCcCCCccCCceeeecCCCccCccccccccc
Q 010426 25 CSLINLQVLLLRDCYYL-LKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFIVGTDTKSSGLKDLKSLAF 103 (511)
Q Consensus 25 ~~l~~L~~L~L~~n~~~-~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 103 (511)
+-++-.+-.|+++|... ...|..+..+++++.|.+..+. +.++|++++.|.+|++|...++...+.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~~v------------ 70 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLISV------------ 70 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhHhh------------
Confidence 44566778899999666 5789889999999999999999 999999999999999998766654332
Q ss_pred cCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCc
Q 010426 104 VGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGK 183 (511)
Q Consensus 104 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 183 (511)
.+.+..++.|+.+.++.|. .....+...+-.+..|+.|+++.|...
T Consensus 71 --------------------hGELs~Lp~LRsv~~R~N~--------------LKnsGiP~diF~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 71 --------------------HGELSDLPRLRSVIVRDNN--------------LKNSGIPTDIFRLKDLTILDLSHNQLR 116 (1255)
T ss_pred --------------------hhhhccchhhHHHhhhccc--------------cccCCCCchhcccccceeeecchhhhh
Confidence 1234445566666665541 112233345556778899999999998
Q ss_pred cCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhh
Q 010426 184 KIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYW 261 (511)
Q Consensus 184 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 261 (511)
..|..+. .-.++-+|++++|. +..+| .+.++..|-.||+++|+ ++.++ ....-+..|+.|++++.+-..
T Consensus 117 EvP~~LE--~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LP---PQ~RRL~~LqtL~Ls~NPL~h-- 187 (1255)
T KOG0444|consen 117 EVPTNLE--YAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLP---PQIRRLSMLQTLKLSNNPLNH-- 187 (1255)
T ss_pred hcchhhh--hhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcC---HHHHHHhhhhhhhcCCChhhH--
Confidence 8887765 46788899999886 67777 56678888889998876 33333 111123444555555443111
Q ss_pred hhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCccccccccccc
Q 010426 262 DTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMH 341 (511)
Q Consensus 262 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 341 (511)
+.-.....+.+|+.|++++.++..+.+|. .+. .+ .+|..++++.| .+..+|..+-
T Consensus 188 ---fQLrQLPsmtsL~vLhms~TqRTl~N~Pt---------------sld-----~l-~NL~dvDlS~N-~Lp~vPecly 242 (1255)
T KOG0444|consen 188 ---FQLRQLPSMTSLSVLHMSNTQRTLDNIPT---------------SLD-----DL-HNLRDVDLSEN-NLPIVPECLY 242 (1255)
T ss_pred ---HHHhcCccchhhhhhhcccccchhhcCCC---------------chh-----hh-hhhhhcccccc-CCCcchHHHh
Confidence 00001123334444444432222111111 011 12 48999999988 7888888899
Q ss_pred CCCCcCeEEecCCCCCcccCCC-CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCccccccc
Q 010426 342 ELNYLQHLCINRCPSIVRFPEE-GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMM 420 (511)
Q Consensus 342 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 420 (511)
.+++|+.|++++| .++.+... +...+|+.|++ +-|+++..+. .+.++++|+.|...+ +..+...+|. .. .
T Consensus 243 ~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNl---SrNQLt~LP~-avcKL~kL~kLy~n~-NkL~FeGiPS-GI--G 313 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGN-KITELNMTEGEWENLETLNL---SRNQLTVLPD-AVCKLTKLTKLYANN-NKLTFEGIPS-GI--G 313 (1255)
T ss_pred hhhhhheeccCcC-ceeeeeccHHHHhhhhhhcc---ccchhccchH-HHhhhHHHHHHHhcc-CcccccCCcc-ch--h
Confidence 9999999999999 67766543 56689999999 6778877664 678999999999988 3333777776 44 6
Q ss_pred CCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCC-CCCCcccEEEecCCcchH
Q 010426 421 LPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEA-GLPSSILWLNIWSCPKLE 485 (511)
Q Consensus 421 ~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~ 485 (511)
.+..|+++..++|. ++-+| +++..|..|+.|.+++ +.+..+|++ .+.+-|+.|+++.+|+|.
T Consensus 314 KL~~Levf~aanN~-LElVP-EglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNK-LELVP-EGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhHHHHhhccc-cccCc-hhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 78899999999987 99999 9999999999999987 667667774 446899999999999997
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=4.2e-15 Score=154.24 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=40.2
Q ss_pred ccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCC
Q 010426 7 LRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPF 70 (511)
Q Consensus 7 Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 70 (511)
-..|+++++.++.+|+.+. ++|+.|++.+| .+..+|. .+++|++|++++|. ++.+|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~N~-LtsLP~ 259 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV 259 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCC---CCCCCcEEEecCCc-cCcccC
Confidence 4567788788877777665 47788888877 6666665 24677888887776 666663
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=5.5e-18 Score=155.27 Aligned_cols=80 Identities=24% Similarity=0.280 Sum_probs=60.9
Q ss_pred cEeecCCCccccCC-ccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCc-ccCcCCCccCCcee
Q 010426 8 RYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALSNFI 85 (511)
Q Consensus 8 r~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~~~ 85 (511)
..++|..|.|+.|| .+|+.+++|+.|||++|.....-|++|.++++|-.|-+.+++.|+.+|.+ |+.|..++.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 35788888899887 45888899999999988444455677888888888777774448888877 88888888876444
Q ss_pred ee
Q 010426 86 VG 87 (511)
Q Consensus 86 ~~ 87 (511)
+.
T Consensus 150 n~ 151 (498)
T KOG4237|consen 150 NH 151 (498)
T ss_pred hh
Confidence 33
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=1.3e-14 Score=150.69 Aligned_cols=154 Identities=25% Similarity=0.346 Sum_probs=73.3
Q ss_pred CCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecC
Q 010426 274 SSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINR 353 (511)
Q Consensus 274 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 353 (511)
++|+.|+++++ ++. .+|. ...+|+.|.+++| .++.++ .++.+|+.|++++| .++.+|.. .++|+.|++++
T Consensus 302 ~~L~~LdLS~N-~L~-~Lp~-lp~~L~~L~Ls~N-~L~~LP--~lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~ 371 (788)
T PRK15387 302 PGLQELSVSDN-QLA-SLPA-LPSELCKLWAYNN-QLTSLP--TLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYN 371 (788)
T ss_pred cccceeECCCC-ccc-cCCC-CcccccccccccC-cccccc--ccccccceEecCCC-ccCCCCCC---Ccccceehhhc
Confidence 44555555552 333 2222 2234555555552 333333 23345555555555 44444432 23455555555
Q ss_pred CCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCC
Q 010426 354 CPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGF 433 (511)
Q Consensus 354 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 433 (511)
| .++.++. .+.+|+.|++ +.+.++.++. ..++|+.|++++ +. +..+|. .+.+|+.|++++|
T Consensus 372 N-~L~~LP~--l~~~L~~LdL---s~N~Lt~LP~----l~s~L~~LdLS~--N~-LssIP~------l~~~L~~L~Ls~N 432 (788)
T PRK15387 372 N-RLTSLPA--LPSGLKELIV---SGNRLTSLPV----LPSELKELMVSG--NR-LTSLPM------LPSGLLSLSVYRN 432 (788)
T ss_pred c-ccccCcc--cccccceEEe---cCCcccCCCC----cccCCCEEEccC--Cc-CCCCCc------chhhhhhhhhccC
Confidence 5 3444432 2345566666 3334443321 124555666666 22 455553 2345556666665
Q ss_pred cCCcccCccccCCCCCcCEEeEecC
Q 010426 434 RNLKMLSSKGFQSLTSLEFLWIDDC 458 (511)
Q Consensus 434 ~~l~~l~~~~~~~l~~L~~L~l~~c 458 (511)
. ++.+| ..+..+++|+.|++++|
T Consensus 433 q-Lt~LP-~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 433 Q-LTRLP-ESLIHLSSETTVNLEGN 455 (788)
T ss_pred c-ccccC-hHHhhccCCCeEECCCC
Confidence 5 56665 44555666666666664
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.8e-13 Score=143.08 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=32.7
Q ss_pred ccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCC
Q 010426 7 LRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPF 70 (511)
Q Consensus 7 Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 70 (511)
...|+++++.++.+|..+. ++|+.|+|++| .+..+|..+. .+|+.|++++|. +..+|.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~ 237 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPA 237 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCCh
Confidence 4556666666666665443 45666666666 5555554433 356666666665 555543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=3.5e-13 Score=140.86 Aligned_cols=243 Identities=20% Similarity=0.265 Sum_probs=159.3
Q ss_pred CCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCe
Q 010426 171 SIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLET 249 (511)
Q Consensus 171 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 249 (511)
+...|++++++...+|..+ .++++.|++++|. +..+| .+ .++|+.|++++|. +..++. ..+++|+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I----p~~L~~L~Ls~N~-LtsLP~~l--~~nL~~L~Ls~N~-LtsLP~-----~l~~~L~~ 245 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI----PEQITTLILDNNE-LKSLPENL--QGNIKTLYANSNQ-LTSIPA-----TLPDTIQE 245 (754)
T ss_pred CceEEEeCCCCcCcCCccc----ccCCcEEEecCCC-CCcCChhh--ccCCCEEECCCCc-cccCCh-----hhhccccE
Confidence 5778888888888888654 3578999999886 55666 32 3589999998875 444431 12457888
Q ss_pred EEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeecc
Q 010426 250 LWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIEN 329 (511)
Q Consensus 250 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 329 (511)
|+++++.. ..+. ....++|+.|++++ +++. .+|....++|+.|++++| .++.++. .++++|+.|++++
T Consensus 246 L~Ls~N~L-~~LP-------~~l~s~L~~L~Ls~-N~L~-~LP~~l~~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~ 313 (754)
T PRK15370 246 MELSINRI-TELP-------ERLPSALQSLDLFH-NKIS-CLPENLPEELRYLSVYDN-SIRTLPA-HLPSGITHLNVQS 313 (754)
T ss_pred EECcCCcc-CcCC-------hhHhCCCCEEECcC-CccC-ccccccCCCCcEEECCCC-ccccCcc-cchhhHHHHHhcC
Confidence 88877642 2221 11234788888875 4666 566555567888888885 5555543 3445788888888
Q ss_pred CcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCc
Q 010426 330 CEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEA 409 (511)
Q Consensus 330 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 409 (511)
| .++.+|..+ .++|+.|++++| .++.++. ..+++|+.|+++ .+.++.++. .+ .++|+.|++++ | . +
T Consensus 314 N-~Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls---~N~L~~LP~-~l--p~~L~~LdLs~-N-~-L 379 (754)
T PRK15370 314 N-SLTALPETL--PPGLKTLEAGEN-ALTSLPA-SLPPELQVLDVS---KNQITVLPE-TL--PPTITTLDVSR-N-A-L 379 (754)
T ss_pred C-ccccCCccc--cccceeccccCC-ccccCCh-hhcCcccEEECC---CCCCCcCCh-hh--cCCcCEEECCC-C-c-C
Confidence 7 555666443 367888888888 5666554 345788888885 334554432 22 36788888888 3 3 6
Q ss_pred cccCcccccccCCCccceEeecCCcCCcccCcccc----CCCCCcCEEeEecCC
Q 010426 410 ECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGF----QSLTSLEFLWIDDCP 459 (511)
Q Consensus 410 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~----~~l~~L~~L~l~~c~ 459 (511)
..+|. ..+++|+.|++++|. ++.+| ..+ ..++.+..|++.+++
T Consensus 380 t~LP~-----~l~~sL~~LdLs~N~-L~~LP-~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 380 TNLPE-----NLPAALQIMQASRNN-LVRLP-ESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCH-----hHHHHHHHHhhccCC-cccCc-hhHHHHhhcCCCccEEEeeCCC
Confidence 77776 334578888888877 77776 322 335777888888755
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.37 E-value=1e-14 Score=135.15 Aligned_cols=299 Identities=18% Similarity=0.156 Sum_probs=184.2
Q ss_pred CccEEEEecCCCCCCCC---CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhcccccccc
Q 010426 196 KMEVLGLENCENCTSLP---SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAG 272 (511)
Q Consensus 196 ~L~~L~l~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 272 (511)
.|+.|.+.||....+-+ ....+|++++|.+.+|.++++..+.. ....+++|+++.+..|..++....+ ....+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk---~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLK---YLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-HHHhcchhhhhhhcccchhHHHHHH---HHHHh
Confidence 45555666655444433 23345666666666665555433100 1112556666666666655544311 11357
Q ss_pred CCCcCeeeeccCCCcCcCCC---CCCCCCCCEEEEEccCCcceecccC---CCCCcCeEeeccCcccccccc--cccCCC
Q 010426 273 FSSLRELSILNCSKFSGILP---LCKNSQLESLCIRYCDSLTFIARRK---LPSSLKWLEIENCEKLESLPN--DMHELN 344 (511)
Q Consensus 273 ~~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~L~~L~l~~~~~l~~l~~--~~~~~~ 344 (511)
+++|++++++.|+.+++.-. ..++..++.+...+|.....-.... ...-+.++++.+|..++.... ....+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 88888888888887774111 1245556666666664433211111 113466677778866665432 224678
Q ss_pred CcCeEEecCCCCCcccCCC---CCCCCCceEEEEecccccccchhhhhhc-cCCcccEEEEecCCCCCccccCccccccc
Q 010426 345 YLQHLCINRCPSIVRFPEE---GFPTNLVELEIRRVDVKMYKAIIHWGLH-RLTSLRRLWIEGCDDDEAECFPDEEMGMM 420 (511)
Q Consensus 345 ~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 420 (511)
.|+.|..++|..+++.... ...++|+.+-++ +|..+++.....++ +.+.|+.+++.+ |.. +.+-.- .....
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~--~c~~fsd~~ft~l~rn~~~Le~l~~e~-~~~-~~d~tL-~sls~ 369 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS--GCQQFSDRGFTMLGRNCPHLERLDLEE-CGL-ITDGTL-ASLSR 369 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEecc--ccchhhhhhhhhhhcCChhhhhhcccc-cce-ehhhhH-hhhcc
Confidence 8899999988877765443 456889999998 88888877655554 788899999988 544 333211 22235
Q ss_pred CCCccceEeecCCcCCcccCc----cccCCCCCcCEEeEecCCCCcccCCCC--CCCcccEEEecCCcchHHHHhcCCCC
Q 010426 421 LPTSLSYLNIIGFRNLKMLSS----KGFQSLTSLEFLWIDDCPNLTSFPEAG--LPSSILWLNIWSCPKLEKVCKWHTKE 494 (511)
Q Consensus 421 ~~~~L~~L~l~~~~~l~~l~~----~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~ 494 (511)
.++.|+++.+++|..+++... ........|+.+.+++||.+++---+. ..++|+++++++|..+++-...
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~---- 445 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS---- 445 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH----
Confidence 789999999999987776411 222345679999999999998642222 2468999999999999875544
Q ss_pred CcceeeeeeEeeCC
Q 010426 495 GSKIANIPRVCRDG 508 (511)
Q Consensus 495 ~~~~~~~~~~~~~~ 508 (511)
...+|.|++++-.
T Consensus 446 -~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 446 -RFATHLPNIKVHA 458 (483)
T ss_pred -HHHhhCccceehh
Confidence 3456777776643
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.5e-14 Score=117.87 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=58.9
Q ss_pred ceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCc
Q 010426 4 WKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSN 83 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~ 83 (511)
+...+.|.||+|.++.+|..+..+.+|++|++.+| .+..+|.+++++++|+.|+++-|. +..+|.+|+.++.|+.|++
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 44556677777777777777777777777777777 677777777777777777777777 6677777777777777775
Q ss_pred eee
Q 010426 84 FIV 86 (511)
Q Consensus 84 ~~~ 86 (511)
..+
T Consensus 110 tyn 112 (264)
T KOG0617|consen 110 TYN 112 (264)
T ss_pred ccc
Confidence 444
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=1.2e-12 Score=139.15 Aligned_cols=99 Identities=28% Similarity=0.431 Sum_probs=52.9
Q ss_pred eeccEeecCCCccccCCccccccccccEEeccCccc-ccccccc-ccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 5 KHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYY-LLKLPSK-LRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~-~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
...|..++-+|.+..++.+. .+++|++|-+.+|.. +..++.. |..++.|++||+++|..+.++|..++.|.+||+|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 34455555556555554433 233566666666532 4444432 45566666666666555566666666666666666
Q ss_pred ceeeecCCCccCcccccccccc
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFV 104 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l 104 (511)
++.+.+...|.++.+++.|.+|
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred ccCCCccccchHHHHHHhhhee
Confidence 6555555544545444444433
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=6.8e-12 Score=133.39 Aligned_cols=229 Identities=25% Similarity=0.267 Sum_probs=129.3
Q ss_pred CceeccEeecCCCc--cccCCcc-ccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCc
Q 010426 3 GWKHLRYLNLSDTR--IRNLPKP-TCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQ 79 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~--i~~l~~~-~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 79 (511)
..+.|++|-+..|. +..++.+ |..++.|++|||++|.....+|.++++|-+||+|+++++. +..+|.++++|+.|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhh
Confidence 34578888888885 6667644 7789999999999988888999989999999999999998 889999999999999
Q ss_pred cCCceeeecCCCccC-ccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhh
Q 010426 80 ALSNFIVGTDTKSSG-LKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESR 158 (511)
Q Consensus 80 ~L~~~~~~~~~~~~~-~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 158 (511)
+|++..++.-....+ ...+.+|+.+ ...... ..........+..+.+|+.+.+.....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L----~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~--------------- 680 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVL----RLPRSA--LSNDKLLLKELENLEHLENLSITISSV--------------- 680 (889)
T ss_pred eeccccccccccccchhhhcccccEE----Eeeccc--cccchhhHHhhhcccchhhheeecchh---------------
Confidence 998776554322112 2225555533 222111 111222223445556666666643310
Q ss_pred hhhhhcCCCCCCCCc----eEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-C-----CCC-CCCccEEEecC
Q 010426 159 EELVLGKLKPCTSIK----KLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-S-----FGL-LSSLKHLTVKG 227 (511)
Q Consensus 159 ~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~-----l~~-l~~L~~L~l~~ 227 (511)
..++.+.....|+ .+.+.++.....+.... .+.+|+.|.+.+|...+... + ... ++++..+.+.+
T Consensus 681 --~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~--~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 681 --LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLG--SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred --HhHhhhhhhHHHHHHhHhhhhcccccceeecccc--cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 1111111111121 22222222222222222 46778888888776532211 1 111 34555555555
Q ss_pred CccceEeccCCCCCCCCCCCCeEEcCCCCCchhh
Q 010426 228 LRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYW 261 (511)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 261 (511)
|........ ....++|+.+.+.++..++..
T Consensus 757 ~~~~r~l~~----~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 757 CHMLRDLTW----LLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cccccccch----hhccCcccEEEEecccccccC
Confidence 554444321 122667777777766655544
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=2.9e-13 Score=125.67 Aligned_cols=288 Identities=16% Similarity=0.117 Sum_probs=197.6
Q ss_pred CCceEEEecCCCccCCc-ccCCCCCCCccEEEEecCCCCCCCC--CC-CCCCCccEEEecCCccceEeccCCCCCCCCCC
Q 010426 171 SIKKLTIKGYGGKKIPS-WIADPSFSKMEVLGLENCENCTSLP--SF-GLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQS 246 (511)
Q Consensus 171 ~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~--~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 246 (511)
.|+.|.+++........ ......+++++.|.+.+|..+++.. .+ ..+++|++|++..|.++++...- .....+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK-YLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH-HHHHhhhh
Confidence 57777777766433321 1122368999999999998777644 33 46789999999988877765411 01233788
Q ss_pred CCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCC---CCCCCCCCCEEEEEccCCcceecccC---CCC
Q 010426 247 LETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGIL---PLCKNSQLESLCIRYCDSLTFIARRK---LPS 320 (511)
Q Consensus 247 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~ 320 (511)
|+++.++-++.+..-. .. ....++..++++...+|....... ....+.-+.++++..|..+++...-. ...
T Consensus 218 L~~lNlSwc~qi~~~g--v~-~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNG--VQ-ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcCc--ch-HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 8888888887655421 10 013456667777777886655321 23355567777777887776654211 126
Q ss_pred CcCeEeeccCcccccccc--cccCCCCcCeEEecCCCCCcccCCC---CCCCCCceEEEEecccccccchhhhhh-ccCC
Q 010426 321 SLKWLEIENCEKLESLPN--DMHELNYLQHLCINRCPSIVRFPEE---GFPTNLVELEIRRVDVKMYKAIIHWGL-HRLT 394 (511)
Q Consensus 321 ~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~~~~-~~l~ 394 (511)
.|+.++.++|..++..+- .-+++.+|+.+.+.+|..+++.... ...+.|+.+++. +|....+.....+ .+++
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e--~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE--ECGLITDGTLASLSRNCP 372 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc--ccceehhhhHhhhccCCc
Confidence 789999999977654432 3368899999999999887775543 356899999999 7877766533334 4899
Q ss_pred cccEEEEecCCCCCccccC--cccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCC
Q 010426 395 SLRRLWIEGCDDDEAECFP--DEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPE 466 (511)
Q Consensus 395 ~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~ 466 (511)
.|+.+.+++ |.. +++-. .++........|+.+.+++|+.+++-..+.+..++.|+.+++.+|..++.-+.
T Consensus 373 ~lr~lslsh-ce~-itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 373 RLRVLSLSH-CEL-ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred hhccCChhh-hhh-hhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 999999999 665 55542 11222245678999999999988876667888999999999999998876544
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=5.2e-13 Score=109.01 Aligned_cols=160 Identities=23% Similarity=0.336 Sum_probs=117.7
Q ss_pred cccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCceeeecCCCccCcccccccc
Q 010426 23 PTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFIVGTDTKSSGLKDLKSLA 102 (511)
Q Consensus 23 ~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~ 102 (511)
.+..+++.+.|-|++| .+..+|+.++.+.+|++|++++|+ ++++|..++.+++|+.|++.++.....|
T Consensus 28 gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lp---------- 95 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILP---------- 95 (264)
T ss_pred cccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCc----------
Confidence 3557889999999999 888899999999999999999999 9999999999999999985544332222
Q ss_pred ccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCC
Q 010426 103 FVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGG 182 (511)
Q Consensus 103 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 182 (511)
..++.++.|+.||+.+|.. .+......|..+..|+-|.++.++.
T Consensus 96 ----------------------rgfgs~p~levldltynnl--------------~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 96 ----------------------RGFGSFPALEVLDLTYNNL--------------NENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred ----------------------cccCCCchhhhhhcccccc--------------ccccCCcchhHHHHHHHHHhcCCCc
Confidence 2255556777777776611 0111112333445677778888888
Q ss_pred ccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEe
Q 010426 183 KKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSM 234 (511)
Q Consensus 183 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~ 234 (511)
..+|..++ .+++|+.|.+..|.. -.+| .++.+..|++|.+.+++ +..+
T Consensus 140 e~lp~dvg--~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnr-l~vl 188 (264)
T KOG0617|consen 140 EILPPDVG--KLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNR-LTVL 188 (264)
T ss_pred ccCChhhh--hhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccce-eeec
Confidence 88887776 688888888888764 4445 77888888888888765 4444
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=1.2e-12 Score=120.60 Aligned_cols=270 Identities=18% Similarity=0.203 Sum_probs=138.4
Q ss_pred CCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCCCCCCCC
Q 010426 170 TSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSL 247 (511)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 247 (511)
+....+++..|+++.+|...+. .+++|++|+|++|. ++.+. .|.++++|..|-+.++..+++++-+. ++.+.++
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~--F~gL~sl 142 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA--FGGLSSL 142 (498)
T ss_pred CcceEEEeccCCcccCChhhcc-chhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH--hhhHHHH
Confidence 3667778888888888766553 67888888888876 34433 67777777777777766666665211 1113333
Q ss_pred CeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCC--CCcCeE
Q 010426 248 ETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWL 325 (511)
Q Consensus 248 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L 325 (511)
+.|.+--+. +..+ ....+..++++..|.+.+ +.+..+..+.+. .+++.+
T Consensus 143 qrLllNan~-i~Ci----r~~al~dL~~l~lLslyD------------------------n~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 143 QRLLLNANH-INCI----RQDALRDLPSLSLLSLYD------------------------NKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred HHHhcChhh-hcch----hHHHHHHhhhcchhcccc------------------------hhhhhhccccccchhccchH
Confidence 332222110 0000 000122344444444444 233333332222 244444
Q ss_pred eeccCcccc------------cccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceE---EEEecccccccchhhhhh
Q 010426 326 EIENCEKLE------------SLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVEL---EIRRVDVKMYKAIIHWGL 390 (511)
Q Consensus 326 ~l~~~~~l~------------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L---~l~~~~~~~l~~~~~~~~ 390 (511)
.+..|+.+. ..|..++.+....-..+.+. .+.......+...++.+ -.. .|+.....+...|
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~-Ri~q~~a~kf~c~~esl~s~~~~--~d~~d~~cP~~cf 270 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK-RINQEDARKFLCSLESLPSRLSS--EDFPDSICPAKCF 270 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH-HhcccchhhhhhhHHhHHHhhcc--ccCcCCcChHHHH
Confidence 444443111 11223333333333333222 22222222222222222 111 3333333344456
Q ss_pred ccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCCC
Q 010426 391 HRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLP 470 (511)
Q Consensus 391 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 470 (511)
.++++|+.|++++ +. ++.+....+ ....++++|.+..|. ++.+....|++++.|+.|++.+ ++|+.+....+.
T Consensus 271 ~~L~~L~~lnlsn--N~-i~~i~~~aF--e~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~ 343 (498)
T KOG4237|consen 271 KKLPNLRKLNLSN--NK-ITRIEDGAF--EGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQ 343 (498)
T ss_pred hhcccceEeccCC--Cc-cchhhhhhh--cchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecC-CeeEEEeccccc
Confidence 7777777777777 44 666665233 556777777777777 7777666777777777777777 577766443332
Q ss_pred --CcccEEEecCCc
Q 010426 471 --SSILWLNIWSCP 482 (511)
Q Consensus 471 --~~L~~L~l~~c~ 482 (511)
.+|.+|.+-.+|
T Consensus 344 ~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNP 357 (498)
T ss_pred ccceeeeeehccCc
Confidence 466677765543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.98 E-value=7.4e-11 Score=114.04 Aligned_cols=77 Identities=25% Similarity=0.160 Sum_probs=48.3
Q ss_pred EeecCCCccc--cCCccccccccccEEeccCcccc-----ccccccccCcCccceEEecCcccccc-------cCCcccC
Q 010426 9 YLNLSDTRIR--NLPKPTCSLINLQVLLLRDCYYL-----LKLPSKLRNLINLRHLDIMGAYLIKE-------IPFGMKE 74 (511)
Q Consensus 9 ~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~-----~~l~~~~~~l~~L~~L~l~~~~~l~~-------l~~~l~~ 74 (511)
.|+|.++.++ ..+..+..+.+|+.|++++| .+ ..++..+...++|+.|+++++. +.. ++..++.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHh
Confidence 4667777765 33444667778888888888 43 2345556677778888888776 332 2233555
Q ss_pred cCCCccCCceeee
Q 010426 75 LKNLQALSNFIVG 87 (511)
Q Consensus 75 l~~L~~L~~~~~~ 87 (511)
+++|+.|+++++.
T Consensus 80 ~~~L~~L~l~~~~ 92 (319)
T cd00116 80 GCGLQELDLSDNA 92 (319)
T ss_pred cCceeEEEccCCC
Confidence 6666666654443
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=5.3e-11 Score=115.04 Aligned_cols=186 Identities=20% Similarity=0.126 Sum_probs=106.5
Q ss_pred CceeccEeecCCCccc-----cCCccccccccccEEeccCccccc-------cccccccCcCccceEEecCcccccccCC
Q 010426 3 GWKHLRYLNLSDTRIR-----NLPKPTCSLINLQVLLLRDCYYLL-------KLPSKLRNLINLRHLDIMGAYLIKEIPF 70 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~n~~~~-------~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 70 (511)
.+..|++|+++++.++ .++..+...++|++|+++++ .+. .++..+..+++|+.|++++|......+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 4567999999999884 35566777888999999998 333 2334567889999999999983333333
Q ss_pred cccCcCC---CccCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccc-cccceeEEeeeccccc
Q 010426 71 GMKELKN---LQALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEK-QYLEALSLQWRSQLQW 146 (511)
Q Consensus 71 ~l~~l~~---L~~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~ 146 (511)
.+..+.+ |++|+++.+..... ........+... ++|+.|++++|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~---------------------------~~~~l~~~l~~~~~~L~~L~L~~n~l~-- 150 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDR---------------------------GLRLLAKGLKDLPPALEKLVLGRNRLE-- 150 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchH---------------------------HHHHHHHHHHhCCCCceEEEcCCCcCC--
Confidence 4544444 88887665543211 000111123333 57777777766110
Q ss_pred CCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCcc-----CCcccCCCCCCCccEEEEecCCCCCC----CC-CCCC
Q 010426 147 GSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKK-----IPSWIADPSFSKMEVLGLENCENCTS----LP-SFGL 216 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~-~l~~ 216 (511)
..........+..+++|+.|+++++.... ++..+. .+++|+.|++++|..... +. .+..
T Consensus 151 ---------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 151 ---------GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK--ANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred ---------chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH--hCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 01111222334445667777777665432 111111 245777777777653211 11 3445
Q ss_pred CCCccEEEecCCc
Q 010426 217 LSSLKHLTVKGLR 229 (511)
Q Consensus 217 l~~L~~L~l~~~~ 229 (511)
+++|++|++++|.
T Consensus 220 ~~~L~~L~ls~n~ 232 (319)
T cd00116 220 LKSLEVLNLGDNN 232 (319)
T ss_pred cCCCCEEecCCCc
Confidence 5666677666654
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.94 E-value=5.7e-09 Score=99.97 Aligned_cols=164 Identities=23% Similarity=0.399 Sum_probs=94.0
Q ss_pred CCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEe
Q 010426 297 SQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRR 376 (511)
Q Consensus 297 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 376 (511)
.+++.|++++| .++.++ .+|.+|++|.+++|..++.+|..+ .++|++|++++|..+.. .+++|+.|++..
T Consensus 52 ~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-----LP~sLe~L~L~~ 121 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-----LPESVRSLEIKG 121 (426)
T ss_pred cCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-----cccccceEEeCC
Confidence 45556666655 455554 355567777777766666666433 35677777777755443 334677777743
Q ss_pred cccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEe
Q 010426 377 VDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWID 456 (511)
Q Consensus 377 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~ 456 (511)
+.+..+..++ ++|+.|.+.+++......++. ..|++|++|++++|..+ .+| ..+- .+|+.|+++
T Consensus 122 n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~-----~LPsSLk~L~Is~c~~i-~LP-~~LP--~SLk~L~ls 185 (426)
T PRK15386 122 SATDSIKNVP-------NGLTSLSINSYNPENQARIDN-----LISPSLKTLSLTGCSNI-ILP-EKLP--ESLQSITLH 185 (426)
T ss_pred CCCcccccCc-------chHhheecccccccccccccc-----ccCCcccEEEecCCCcc-cCc-cccc--ccCcEEEec
Confidence 3333332222 356677665412110122222 35678888888888844 344 2222 588888887
Q ss_pred cCCCC-cccCCCCCCCcccEEEecCCcchHHH
Q 010426 457 DCPNL-TSFPEAGLPSSILWLNIWSCPKLEKV 487 (511)
Q Consensus 457 ~c~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~ 487 (511)
.+... ..++...+|+++ .|.+.+|-++..-
T Consensus 186 ~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~ 216 (426)
T PRK15386 186 IEQKTTWNISFEGFPDGL-DIDLQNSVLLSPD 216 (426)
T ss_pred ccccccccCccccccccc-EechhhhcccCHH
Confidence 64322 134555677788 8888888766543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=2.9e-10 Score=97.12 Aligned_cols=84 Identities=32% Similarity=0.324 Sum_probs=28.9
Q ss_pred CceeccEeecCCCccccCCcccc-ccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcc-cCcCCCcc
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTC-SLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGM-KELKNLQA 80 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~-~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~ 80 (511)
+..++|.|+|.+|.|+.+. .++ .+.+|+.|++++| .+..++. +..++.|++|++++|. ++.+++.+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 4557899999999999874 455 5789999999999 8887765 8889999999999999 88886555 46899999
Q ss_pred CCceeeecCC
Q 010426 81 LSNFIVGTDT 90 (511)
Q Consensus 81 L~~~~~~~~~ 90 (511)
|+++++.+..
T Consensus 93 L~L~~N~I~~ 102 (175)
T PF14580_consen 93 LYLSNNKISD 102 (175)
T ss_dssp EE-TTS---S
T ss_pred EECcCCcCCC
Confidence 9987776633
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=3.3e-09 Score=90.68 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=38.7
Q ss_pred CCcCeEeeccCccccccccccc-CCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccE
Q 010426 320 SSLKWLEIENCEKLESLPNDMH-ELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRR 398 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~ 398 (511)
..+++|++.+| .++.+. .+. .+.+|+.|++++| .++.+.....++.|++|++ +.|.++.+.......+|+|+.
T Consensus 19 ~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L---~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDL---SNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE-----SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccc-cccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhccc---CCCCCCccccchHHhCCcCCE
Confidence 35677777777 444443 333 5677777777777 6666665556677777777 455555543211235677777
Q ss_pred EEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCc---cccCCCCCcCEEeE
Q 010426 399 LWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSS---KGFQSLTSLEFLWI 455 (511)
Q Consensus 399 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~~l~~L~~L~l 455 (511)
|++++ +. +..+.....+ ..+++|++|++.+|| +..-+. ..+..+|+|+.||-
T Consensus 93 L~L~~--N~-I~~l~~l~~L-~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSN--NK-ISDLNELEPL-SSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT--S----SCCCCGGG-GG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcC--Cc-CCChHHhHHH-HcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 77776 33 5555442221 346667777777766 543321 22344566665544
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.6e-08 Score=70.93 Aligned_cols=58 Identities=33% Similarity=0.504 Sum_probs=51.4
Q ss_pred eeccEeecCCCccccCC-ccccccccccEEeccCcccccccc-ccccCcCccceEEecCcc
Q 010426 5 KHLRYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAY 63 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~ 63 (511)
++|++|++++|.|+.+| +.|..+++|++|++++| .+..++ ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999997 56899999999999999 777777 568999999999999986
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=8.9e-09 Score=102.56 Aligned_cols=171 Identities=29% Similarity=0.351 Sum_probs=86.0
Q ss_pred eccEeecCCCccccCCccccccc-cccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCce
Q 010426 6 HLRYLNLSDTRIRNLPKPTCSLI-NLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNF 84 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~~~~~l~-~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~ 84 (511)
.++.|++.+|.|..+|.....+. +|+.|++++| .+..+|..++.+++|+.|++++|. +.++|...+.++.|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheecc
Confidence 45555555555555554444442 5555555555 555554445555555555555555 55555444455555555544
Q ss_pred eeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhc
Q 010426 85 IVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLG 164 (511)
Q Consensus 85 ~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (511)
++.+...|..+ .....|+.++++.|. ......
T Consensus 195 ~N~i~~l~~~~--------------------------------~~~~~L~~l~~~~N~----------------~~~~~~ 226 (394)
T COG4886 195 GNKISDLPPEI--------------------------------ELLSALEELDLSNNS----------------IIELLS 226 (394)
T ss_pred CCccccCchhh--------------------------------hhhhhhhhhhhcCCc----------------ceecch
Confidence 44433321111 122235555554440 111122
Q ss_pred CCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCc
Q 010426 165 KLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 165 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 229 (511)
.+..+.++..+.+..+....++..+. .+++++.|++++|. +..++.++.+.+++.|+++++.
T Consensus 227 ~~~~~~~l~~l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred hhhhcccccccccCCceeeeccchhc--cccccceecccccc-ccccccccccCccCEEeccCcc
Confidence 33334455555555555544444443 45567777777665 4555556666777777776655
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=6.4e-09 Score=97.74 Aligned_cols=205 Identities=15% Similarity=0.120 Sum_probs=124.5
Q ss_pred CCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC---CCCCCCCccEEEecCCccceEeccCCCCCCCC
Q 010426 168 PCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP---SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPF 244 (511)
Q Consensus 168 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 244 (511)
.+.+|+.+.++++.....+..-..+.|++++.|++++|-+..-.+ -...+|+|+.|+++.|....- .++.....+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~--~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF--ISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC--ccccchhhh
Confidence 456778888877766544421111268888888888875322222 345778888888887753221 112222357
Q ss_pred CCCCeEEcCCCCC-chhhhhhccccccccCCCcCeeeeccCC-CcCcCCCCCCCCCCCEEEEEccCCccee--cccCCCC
Q 010426 245 QSLETLWFEDLPE-WEYWDTKFEENGVAGFSSLRELSILNCS-KFSGILPLCKNSQLESLCIRYCDSLTFI--ARRKLPS 320 (511)
Q Consensus 245 ~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~ 320 (511)
++|+.|.+.+|.- +..+. .....||+|+.|++..+. .+....+..-+..|+.|+|++++.+..- +..+..+
T Consensus 197 ~~lK~L~l~~CGls~k~V~-----~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQ-----WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHH-----HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 8888888888763 22221 113578899999988863 2222444556778889999887655433 2222225
Q ss_pred CcCeEeeccCcccccc--ccc-----ccCCCCcCeEEecCCCC--CcccCCCCCCCCCceEEEEeccccccc
Q 010426 321 SLKWLEIENCEKLESL--PND-----MHELNYLQHLCINRCPS--IVRFPEEGFPTNLVELEIRRVDVKMYK 383 (511)
Q Consensus 321 ~L~~L~l~~~~~l~~l--~~~-----~~~~~~L~~L~l~~~~~--l~~~~~~~~~~~L~~L~l~~~~~~~l~ 383 (511)
.|+.|+++.| .+.++ |+. ...+++|++|++..|+. +.++.....+++|+.|.+ -|+.+.
T Consensus 272 ~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~---~~n~ln 339 (505)
T KOG3207|consen 272 GLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI---TLNYLN 339 (505)
T ss_pred chhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc---cccccc
Confidence 8888888887 44433 222 46788889999888843 233333345677777777 455444
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.4e-08 Score=95.45 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=29.5
Q ss_pred CceeccEeecCCCccccCC--ccccccccccEEeccCcccccccc---ccccCcCccceEEecCcc
Q 010426 3 GWKHLRYLNLSDTRIRNLP--KPTCSLINLQVLLLRDCYYLLKLP---SKLRNLINLRHLDIMGAY 63 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~--~~~~~l~~L~~L~L~~n~~~~~l~---~~~~~l~~L~~L~l~~~~ 63 (511)
++++||...|.+..+...+ .....|++++.|||+.| .+...- .....|++|+.|+++.|.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc
Confidence 3455555555555555443 23445556666666655 222111 112345555555555554
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.49 E-value=8.5e-09 Score=100.01 Aligned_cols=188 Identities=21% Similarity=0.290 Sum_probs=111.4
Q ss_pred EeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCceeeec
Q 010426 9 YLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFIVGT 88 (511)
Q Consensus 9 ~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~~~~ 88 (511)
..+++.|++..+|.++..+..|+.+.|+.| .+..+|..+..+..|.+||++.|+ +..+|..+..|+ |+.|-++++..
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCcc
Confidence 456666777777766666667777777766 666677667777777777777776 666666666555 55555555555
Q ss_pred CCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCC
Q 010426 89 DTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKP 168 (511)
Q Consensus 89 ~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 168 (511)
...|..+..+..+..+ ....+ .....+..+.++..|+.|.++.|+..+. .+.+..
T Consensus 156 ~~lp~~ig~~~tl~~l--d~s~n-------ei~slpsql~~l~slr~l~vrRn~l~~l----------------p~El~~ 210 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHL--DVSKN-------EIQSLPSQLGYLTSLRDLNVRRNHLEDL----------------PEELCS 210 (722)
T ss_pred ccCCcccccchhHHHh--hhhhh-------hhhhchHHhhhHHHHHHHHHhhhhhhhC----------------CHHHhC
Confidence 5555555444444433 11111 2222334455666666766666621111 112221
Q ss_pred CCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC----CCCCCCCccEEEecCC
Q 010426 169 CTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP----SFGLLSSLKHLTVKGL 228 (511)
Q Consensus 169 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~~~ 228 (511)
=.|..|+++.|++..+|..+. .+..|++|.|.+|. +...| .-++..=-|+|+..-|
T Consensus 211 -LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 211 -LPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -CceeeeecccCceeecchhhh--hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 167788888888888886665 67888888888876 44444 2233344556666555
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=7.5e-09 Score=94.63 Aligned_cols=224 Identities=15% Similarity=0.108 Sum_probs=134.3
Q ss_pred CceeccEeecCCCccc-----cCCccccccccccEEeccCccccc----ccccc-------ccCcCccceEEecCccccc
Q 010426 3 GWKHLRYLNLSDTRIR-----NLPKPTCSLINLQVLLLRDCYYLL----KLPSK-------LRNLINLRHLDIMGAYLIK 66 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~n~~~~----~l~~~-------~~~l~~L~~L~l~~~~~l~ 66 (511)
.+..+..|+|++|.|. .+.+.+...++|+..+++.= ... .+|+. +-..++|++||||+|.+-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3567889999999885 35555777889999999864 332 33433 4467899999999998333
Q ss_pred ccCC----cccCcCCCccCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeec
Q 010426 67 EIPF----GMKELKNLQALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRS 142 (511)
Q Consensus 67 ~l~~----~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 142 (511)
+-+. -+..+..|++|++.++++... .+-.-=+.|..+. ........+.|+.+....|.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~~al~~l~-----------------~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLGRALFELA-----------------VNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHHHHHHHHH-----------------HHhccCCCcceEEEEeeccc
Confidence 3332 256789999999888887554 1111001121110 11224455788998888772
Q ss_pred ccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCccCCc---ccCCCCCCCccEEEEecCCCCCC----CC-CC
Q 010426 143 QLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKKIPS---WIADPSFSKMEVLGLENCENCTS----LP-SF 214 (511)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~-~l 214 (511)
+ ...........++.++.|+.+++..|++..--. ......+++|++|++.+|.+... +. .+
T Consensus 169 l-----------en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 169 L-----------ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred c-----------ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 1 112222333456666889999998877532111 01112688999999998875432 11 45
Q ss_pred CCCCCccEEEecCCccceEec--cCCCCCCCCCCCCeEEcCCCC
Q 010426 215 GLLSSLKHLTVKGLRKLKSMG--YGEHCSNPFQSLETLWFEDLP 256 (511)
Q Consensus 215 ~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 256 (511)
..+++|++|++++|-.-..-. +........|+|+.+.+.++.
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 667788899888885221111 211122235666666666553
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=6.3e-08 Score=86.79 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=91.2
Q ss_pred CCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEE
Q 010426 320 SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRL 399 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L 399 (511)
..|+.+++++| .++.+..+..-.|.++.|++++| .+..+.....+++|+.||+ +.|.++.+.. +-.++-+.+.|
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDL---S~N~Ls~~~G-wh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDL---SGNLLAECVG-WHLKLGNIKTL 357 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeec---ccchhHhhhh-hHhhhcCEeee
Confidence 47888888888 66677777778888888888888 5666665677888888888 4555554431 33577888888
Q ss_pred EEecCCCCCccccCcccccccCCCccceEeecCCcCCcccC-ccccCCCCCcCEEeEecCC
Q 010426 400 WIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLS-SKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~l~~L~~L~l~~c~ 459 (511)
.+++ +. +.++.. . ..+-+|..||+++|. ++.+. ..++..+|.|+.+.+.++|
T Consensus 358 ~La~--N~-iE~LSG--L--~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQ--NK-IETLSG--L--RKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhh--hh-Hhhhhh--h--Hhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 8888 44 555553 1 346678888888887 77553 2477888888888888865
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=3e-08 Score=88.77 Aligned_cols=128 Identities=26% Similarity=0.299 Sum_probs=92.0
Q ss_pred CceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
-++.|+.||||+|.|+.+.+++.-.|+++.|++++| .+..+.. +..|.+|+.||+|+|. +.++...=.+|-++++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 357789999999999999888999999999999999 7776655 8899999999999998 776643334677888888
Q ss_pred ceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeee
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWR 141 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 141 (511)
++.+.+.+. .++..+-.|-.+ .+.-+.++.. .....+++++.|+.+.+.+|
T Consensus 359 La~N~iE~L-SGL~KLYSLvnL--Dl~~N~Ie~l-----deV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNL--DLSSNQIEEL-----DEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheec--cccccchhhH-----HHhcccccccHHHHHhhcCC
Confidence 888777554 444444444433 2222222221 11234667777777777666
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=2.1e-07 Score=92.69 Aligned_cols=154 Identities=30% Similarity=0.368 Sum_probs=114.0
Q ss_pred eccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCcee
Q 010426 6 HLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFI 85 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~ 85 (511)
+|+.|++++|.|..+|..+..+++|+.|++++| .+..+|...+.+++|+.|++++|. +..+|..++.+..|++|.++.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcC
Confidence 899999999999999888999999999999999 999999867799999999999999 999998887888899999877
Q ss_pred eecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcC
Q 010426 86 VGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGK 165 (511)
Q Consensus 86 ~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (511)
+.+...+..+..+..+. .+.++.+. .......
T Consensus 219 N~~~~~~~~~~~~~~l~--------------------------------~l~l~~n~----------------~~~~~~~ 250 (394)
T COG4886 219 NSIIELLSSLSNLKNLS--------------------------------GLELSNNK----------------LEDLPES 250 (394)
T ss_pred Ccceecchhhhhccccc--------------------------------ccccCCce----------------eeeccch
Confidence 74333223333333333 22222220 0000234
Q ss_pred CCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC
Q 010426 166 LKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP 212 (511)
Q Consensus 166 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 212 (511)
+..++.++.|+++++.+..++. +. ...+++.|+++++......+
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~-~~--~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS-LG--SLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hccccccceecccccccccccc-cc--ccCccCEEeccCccccccch
Confidence 4556678888888888887776 33 67889999999887655544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=9.5e-07 Score=61.79 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=35.0
Q ss_pred CcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecC
Q 010426 394 TSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDC 458 (511)
Q Consensus 394 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 458 (511)
|+|++|++++ | . +..++...+ ..+++|++|++++|. ++.++...|.++++|++|++++|
T Consensus 1 p~L~~L~l~~-n-~-l~~i~~~~f--~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSN-N-K-LTEIPPDSF--SNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETS-S-T-ESEECTTTT--TTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCC-C-C-CCccCHHHH--cCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 3556666666 2 3 555554122 455666666666666 66666566666666666666664
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.28 E-value=4.8e-06 Score=80.23 Aligned_cols=134 Identities=25% Similarity=0.430 Sum_probs=95.7
Q ss_pred CCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEE
Q 010426 320 SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRL 399 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L 399 (511)
.+++.|++++| .++++|. -.++|++|.+++|..++.++. ..+++|+.|++. +|..+..++ ++|+.|
T Consensus 52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls--~Cs~L~sLP-------~sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVC--HCPEISGLP-------ESVRSL 117 (426)
T ss_pred cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEcc--Ccccccccc-------cccceE
Confidence 58999999999 8888872 345799999999988887774 356799999998 777665433 468888
Q ss_pred EEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCcccc-CCC-CCcCEEeEecCCCCcccCCCCCCCcccEEE
Q 010426 400 WIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGF-QSL-TSLEFLWIDDCPNLTSFPEAGLPSSILWLN 477 (511)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~l-~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ 477 (511)
++.+ +. ...++ ..+++|++|.+.++.-.... .+ ..+ ++|++|++++|..+. +| .++|.+|++|+
T Consensus 118 ~L~~--n~-~~~L~------~LPssLk~L~I~~~n~~~~~---~lp~~LPsSLk~L~Is~c~~i~-LP-~~LP~SLk~L~ 183 (426)
T PRK15386 118 EIKG--SA-TDSIK------NVPNGLTSLSINSYNPENQA---RIDNLISPSLKTLSLTGCSNII-LP-EKLPESLQSIT 183 (426)
T ss_pred EeCC--CC-Ccccc------cCcchHhheecccccccccc---ccccccCCcccEEEecCCCccc-Cc-ccccccCcEEE
Confidence 8876 22 33333 35678999998653312111 11 123 689999999998664 44 45889999999
Q ss_pred ecCC
Q 010426 478 IWSC 481 (511)
Q Consensus 478 l~~c 481 (511)
+..+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 9874
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.5e-08 Score=90.72 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=118.7
Q ss_pred ccccEEeccCccccc--cccccccCcCccceEEecCcccccccCCcccCcCCCccCCceeeecCCCccCccccccccccC
Q 010426 28 INLQVLLLRDCYYLL--KLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFIVGTDTKSSGLKDLKSLAFVG 105 (511)
Q Consensus 28 ~~L~~L~L~~n~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~ 105 (511)
..|++|||++. .+. .+..-++.+.+|+.|.+.++..-+.+...+++-..|+.|+++++...+.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-------------- 249 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-------------- 249 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch--------------
Confidence 46999999987 433 3334468899999999999883344445578888999999888765333
Q ss_pred ceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCC---
Q 010426 106 GELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGG--- 182 (511)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--- 182 (511)
.+..-.+..+..|.+|+++|| .. .........+.+ -++|+.|.++++.-
T Consensus 250 ---------------n~~~ll~~scs~L~~LNlsWc------~l-----~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 250 ---------------NALQLLLSSCSRLDELNLSWC------FL-----FTEKVTVAVAHI--SETLTQLNLSGYRRNLQ 301 (419)
T ss_pred ---------------hHHHHHHHhhhhHhhcCchHh------hc-----cchhhhHHHhhh--chhhhhhhhhhhHhhhh
Confidence 112223566778889999998 11 111111111222 23788888877642
Q ss_pred -ccCCcccCCCCCCCccEEEEecCCCCCC--CCCCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCC
Q 010426 183 -KKIPSWIADPSFSKMEVLGLENCENCTS--LPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLP 256 (511)
Q Consensus 183 -~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 256 (511)
..+.... ..+++|..|++++|..+.. +..+.+++.|++|.++.|..+.--.+ ..+++.|+|.+|++.++-
T Consensus 302 ~sh~~tL~--~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~--~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 302 KSHLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL--LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhHHHHHH--HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe--eeeccCcceEEEEecccc
Confidence 1122112 2689999999999876654 22677889999999999986542211 234558999999998863
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=8.3e-07 Score=56.86 Aligned_cols=40 Identities=33% Similarity=0.470 Sum_probs=26.1
Q ss_pred eeccEeecCCCccccCCccccccccccEEeccCcccccccc
Q 010426 5 KHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLP 45 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~ 45 (511)
++||+|++++|+|+.+|..++.+++|++|++++| .+..++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 3577777777777777666777777777777777 454443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.5e-08 Score=88.34 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCcCeeeeccCCCcCcC---CCCCCCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCccccccc--ccccCCCCc
Q 010426 274 SSLRELSILNCSKFSGI---LPLCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLP--NDMHELNYL 346 (511)
Q Consensus 274 ~~L~~L~l~~c~~l~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~--~~~~~~~~L 346 (511)
..|+.+++++. .++.. .-...+..|+.|.+++.. +.+--...+. .+|+.++++.|..+++.. ..+.+|+.|
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 35777777762 33210 011245667777776632 2211101111 578888888888877543 345788888
Q ss_pred CeEEecCCCCCcccCC---CCCCCCCceEEEE
Q 010426 347 QHLCINRCPSIVRFPE---EGFPTNLVELEIR 375 (511)
Q Consensus 347 ~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~ 375 (511)
.+|++++|...+.... ....++|+.|+++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence 8888888854443211 1334566666666
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.17 E-value=8.7e-08 Score=93.18 Aligned_cols=173 Identities=22% Similarity=0.252 Sum_probs=115.1
Q ss_pred ceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCc
Q 010426 4 WKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSN 83 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~ 83 (511)
+..|..|.|..|.|..+|..+..+..|.+|||+.| .+..+|..+..|+ |++|-+++|. ++.+|.+++.+..|.+|+.
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhh
Confidence 44567788888888888888888889999999888 7778887666554 8888888888 8888888888888888888
Q ss_pred eeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhh
Q 010426 84 FIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVL 163 (511)
Q Consensus 84 ~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (511)
+.|.+.+.|..+..+..|..+. +..+.+. ..+..+.. -.|..||++.|. ...+.
T Consensus 174 s~nei~slpsql~~l~slr~l~--vrRn~l~-------~lp~El~~-LpLi~lDfScNk----------------is~iP 227 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLN--VRRNHLE-------DLPEELCS-LPLIRLDFSCNK----------------ISYLP 227 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHH--Hhhhhhh-------hCCHHHhC-CceeeeecccCc----------------eeecc
Confidence 8887777655555555554331 1111111 11122332 257777777661 11223
Q ss_pred cCCCCCCCCceEEEecCCCccCCcccCCCCC-CCccEEEEecC
Q 010426 164 GKLKPCTSIKKLTIKGYGGKKIPSWIADPSF-SKMEVLGLENC 205 (511)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 205 (511)
..|..++.|++|-+.+|...+-|..+...+- .=.++|+..-|
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 3566677888888888877766655443222 22566666666
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=6.2e-07 Score=89.56 Aligned_cols=82 Identities=27% Similarity=0.260 Sum_probs=39.8
Q ss_pred eccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCcee
Q 010426 6 HLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFI 85 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~ 85 (511)
.++.+++..|.|..+-..+..+++|..|++.+| .+..+...+..+++|++|++++|. |+++ .++..++.|+.|++.+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheeccccc-cccc-cchhhccchhhheecc
Confidence 344444444555443333445555555555555 444443334455555555555555 4444 2444455555555555
Q ss_pred eecCC
Q 010426 86 VGTDT 90 (511)
Q Consensus 86 ~~~~~ 90 (511)
+.+..
T Consensus 150 N~i~~ 154 (414)
T KOG0531|consen 150 NLISD 154 (414)
T ss_pred Ccchh
Confidence 55433
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=3.6e-06 Score=88.17 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=73.1
Q ss_pred eccEeecCCCccc-cCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCce
Q 010426 6 HLRYLNLSDTRIR-NLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNF 84 (511)
Q Consensus 6 ~Lr~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~ 84 (511)
.++.|+|++|.+. .+|.+++.+++|+.|+|++|.....+|..++.+++|+.|++++|..-..+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999997 778889999999999999996666899889999999999999999445788889999999999987
Q ss_pred eeec
Q 010426 85 IVGT 88 (511)
Q Consensus 85 ~~~~ 88 (511)
.+..
T Consensus 499 ~N~l 502 (623)
T PLN03150 499 GNSL 502 (623)
T ss_pred CCcc
Confidence 7754
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5.1e-06 Score=53.22 Aligned_cols=40 Identities=35% Similarity=0.467 Sum_probs=32.9
Q ss_pred ccccEEeccCccccccccccccCcCccceEEecCcccccccC
Q 010426 28 INLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIP 69 (511)
Q Consensus 28 ~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~ 69 (511)
++|++|++++| .+..+|+.+++|++|++|++++|. +++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 57999999999 888888889999999999999998 76553
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.00 E-value=4.1e-06 Score=87.78 Aligned_cols=85 Identities=28% Similarity=0.371 Sum_probs=70.8
Q ss_pred CCCceeccEeecCCCccc-cCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCc-CCC
Q 010426 1 MSGWKHLRYLNLSDTRIR-NLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKEL-KNL 78 (511)
Q Consensus 1 ~~~l~~Lr~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l-~~L 78 (511)
|+++++|+.|+|++|.+. .+|..++.+++|++|+|++|.....+|+.++++++|++|++++|..-..+|..++.+ .++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 357899999999999997 789899999999999999996667899999999999999999999556888777653 344
Q ss_pred ccCCcee
Q 010426 79 QALSNFI 85 (511)
Q Consensus 79 ~~L~~~~ 85 (511)
..+++.+
T Consensus 518 ~~l~~~~ 524 (623)
T PLN03150 518 ASFNFTD 524 (623)
T ss_pred ceEEecC
Confidence 5554433
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.97 E-value=6.3e-07 Score=82.29 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=46.7
Q ss_pred hccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCcc-----CCcccCCCCCCCccE
Q 010426 125 AMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKK-----IPSWIADPSFSKMEV 199 (511)
Q Consensus 125 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~ 199 (511)
..+..+++|+.||++.| .............++..++|+.|+++.+.... +-..+.. ..++|++
T Consensus 207 eal~~~~~LevLdl~DN-----------tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~-~~p~L~v 274 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDN-----------TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE-SAPSLEV 274 (382)
T ss_pred HHHHhCCcceeeecccc-----------hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc-cCCCCce
Confidence 34555667777777655 11122222233445555666666666654322 1111221 3566777
Q ss_pred EEEecCCCCCC----CC-CCCCCCCccEEEecCCc
Q 010426 200 LGLENCENCTS----LP-SFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 200 L~l~~~~~~~~----~~-~l~~l~~L~~L~l~~~~ 229 (511)
+.+.+|..... +. .+...|.|+.|++++|.
T Consensus 275 l~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 275 LELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 77766653221 11 33445666666666665
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=1.1e-06 Score=87.93 Aligned_cols=82 Identities=34% Similarity=0.419 Sum_probs=51.6
Q ss_pred CceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
.+++|..|++.+|.|..+...+..+++|++|++++| .+..+.. +..++.|+.|++++|. +..+ .++..+++|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGNL-ISDI-SGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccCc-chhc-cCCccchhhhccc
Confidence 456667777777777666444666677777777776 5555543 5666667777777776 5554 3455566666666
Q ss_pred ceeeec
Q 010426 83 NFIVGT 88 (511)
Q Consensus 83 ~~~~~~ 88 (511)
+.++.+
T Consensus 169 l~~n~i 174 (414)
T KOG0531|consen 169 LSYNRI 174 (414)
T ss_pred CCcchh
Confidence 555544
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=5.5e-06 Score=74.57 Aligned_cols=83 Identities=20% Similarity=0.142 Sum_probs=48.8
Q ss_pred CceeccEeecCCCcccc---CCccccccccccEEeccCccccccccccc-cCcCccceEEecCccc-ccccCCcccCcCC
Q 010426 3 GWKHLRYLNLSDTRIRN---LPKPTCSLINLQVLLLRDCYYLLKLPSKL-RNLINLRHLDIMGAYL-IKEIPFGMKELKN 77 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~---l~~~~~~l~~L~~L~L~~n~~~~~l~~~~-~~l~~L~~L~l~~~~~-l~~l~~~l~~l~~ 77 (511)
..++++.|+|.+|.|+. +-....++|+|++|+|+.|+.-..+- .+ ..+.+|++|.+.++.. ..+....+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34567778888887763 32334577788888888773222111 12 2456777777777651 1333344666777
Q ss_pred CccCCceee
Q 010426 78 LQALSNFIV 86 (511)
Q Consensus 78 L~~L~~~~~ 86 (511)
+++|+.+.+
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777765544
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=2.6e-05 Score=81.67 Aligned_cols=138 Identities=23% Similarity=0.240 Sum_probs=76.8
Q ss_pred eeccEeecCCCcc-ccC-Ccccc-ccccccEEeccCccccc-cccccccCcCccceEEecCcccccccCCcccCcCCCcc
Q 010426 5 KHLRYLNLSDTRI-RNL-PKPTC-SLINLQVLLLRDCYYLL-KLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQA 80 (511)
Q Consensus 5 ~~Lr~L~L~~n~i-~~l-~~~~~-~l~~L~~L~L~~n~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 80 (511)
.+|+.|++++... ..- |..++ .+|.|+.|.+++-.... +...-..++++|..||+|+++ +..+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 4567777776543 222 33333 45777777776642111 111123566777777777776 6555 56677777777
Q ss_pred CCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhh
Q 010426 81 LSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREE 160 (511)
Q Consensus 81 L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (511)
|...+-.+.. ......+..+++|+.||++.. .. ........
T Consensus 200 L~mrnLe~e~------------------------------~~~l~~LF~L~~L~vLDIS~~------~~---~~~~~ii~ 240 (699)
T KOG3665|consen 200 LSMRNLEFES------------------------------YQDLIDLFNLKKLRVLDISRD------KN---NDDTKIIE 240 (699)
T ss_pred HhccCCCCCc------------------------------hhhHHHHhcccCCCeeecccc------cc---ccchHHHH
Confidence 6532222111 111133556678999999876 11 11122333
Q ss_pred hhhcCCCCCCCCceEEEecCCCc
Q 010426 161 LVLGKLKPCTSIKKLTIKGYGGK 183 (511)
Q Consensus 161 ~~~~~l~~~~~L~~L~l~~~~~~ 183 (511)
...+.-..+|+|+.|+.+++...
T Consensus 241 qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 241 QYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHHhcccCccccEEecCCcchh
Confidence 44556666889999999877653
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=1e-05 Score=64.43 Aligned_cols=81 Identities=19% Similarity=0.303 Sum_probs=42.2
Q ss_pred EeecCCCccccCCcccccc---ccccEEeccCccccccccccc-cCcCccceEEecCcccccccCCcccCcCCCccCCce
Q 010426 9 YLNLSDTRIRNLPKPTCSL---INLQVLLLRDCYYLLKLPSKL-RNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNF 84 (511)
Q Consensus 9 ~L~L~~n~i~~l~~~~~~l---~~L~~L~L~~n~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~ 84 (511)
.++|+++.+-.+++....+ .+|...+|++| .++..|+.| .+.+-.+.|++++|. +.++|.+++.++.|+.|++.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccc
Confidence 4555555555444443332 33444455555 555555444 233455556666555 55555555556666666555
Q ss_pred eeecCCC
Q 010426 85 IVGTDTK 91 (511)
Q Consensus 85 ~~~~~~~ 91 (511)
.+.+...
T Consensus 109 ~N~l~~~ 115 (177)
T KOG4579|consen 109 FNPLNAE 115 (177)
T ss_pred cCccccc
Confidence 5555444
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=8.3e-05 Score=63.44 Aligned_cols=79 Identities=23% Similarity=0.277 Sum_probs=52.2
Q ss_pred eccEeecCCCccccCCccccccccccEEeccCcccccccccccc-CcCccceEEecCcccccccCC--cccCcCCCccCC
Q 010426 6 HLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLR-NLINLRHLDIMGAYLIKEIPF--GMKELKNLQALS 82 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~-~l~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~ 82 (511)
..-.+||++|+|..++ .|..+++|.+|.+.+| ++..+.+.+. -+++|++|.+.+|. +.++.+ .+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 3445777777777663 3677788888888887 6666655554 45568888888887 666642 256667777776
Q ss_pred ceeee
Q 010426 83 NFIVG 87 (511)
Q Consensus 83 ~~~~~ 87 (511)
+.++.
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 54443
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=3.1e-06 Score=84.98 Aligned_cols=123 Identities=28% Similarity=0.219 Sum_probs=58.1
Q ss_pred ccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCc-ccCcCCCccCCcee
Q 010426 7 LRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALSNFI 85 (511)
Q Consensus 7 Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~~~ 85 (511)
|.+.+.+.|.+..+..++.-++.|+.|||++| .+.... .+..|++|++|||++|. +..+|.. ...++ |+.|.+.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecc
Confidence 44444555555555444555555555555555 333332 35555555555555555 5555422 22222 55555555
Q ss_pred eecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeee
Q 010426 86 VGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWR 141 (511)
Q Consensus 86 ~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 141 (511)
+...+. .++.++++|..| +++.+-+...+.. ..+..+..|+.|++.+|
T Consensus 242 N~l~tL-~gie~LksL~~L--DlsyNll~~hseL-----~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGL--DLSYNLLSEHSEL-----EPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred cHHHhh-hhHHhhhhhhcc--chhHhhhhcchhh-----hHHHHHHHHHHHhhcCC
Confidence 554444 444444444444 3333333222211 11223346677777766
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.43 E-value=5.7e-06 Score=84.86 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=31.7
Q ss_pred eEeecCCcCC-cccCccccCCCCCcCEEeEecCCCCcccCCCCC---CCcccEEEecCCcchHHHH
Q 010426 427 YLNIIGFRNL-KMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL---PSSILWLNIWSCPKLEKVC 488 (511)
Q Consensus 427 ~L~l~~~~~l-~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~l~~~~ 488 (511)
.+.+.+|+.+ ..+. .....+..++.|++..|...+.-.-... ..+++.+++.+|+.+....
T Consensus 380 ~~~l~gc~~l~~~l~-~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLE-LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred HHHhcCCcccchHHH-HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 3455566655 2222 1122233377777777776664211101 2456677777777776543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=0.00015 Score=76.18 Aligned_cols=133 Identities=22% Similarity=0.188 Sum_probs=81.8
Q ss_pred CCcCeEeeccCcccccc-c-ccccCCCCcCeEEecCCCCCcc-cCC-CCCCCCCceEEEEecccccccchhhhhhccCCc
Q 010426 320 SSLKWLEIENCEKLESL-P-NDMHELNYLQHLCINRCPSIVR-FPE-EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTS 395 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l-~-~~~~~~~~L~~L~l~~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~ 395 (511)
.+|++|+++|...+..- | ..-..+|+|++|.+++-....+ +.. ...+|+|..||+++++...+ .+++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-----SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-----HHHhcccc
Confidence 58999999886544321 1 1235789999999988743333 111 25678999999964444444 36888999
Q ss_pred ccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCccc-----CccccCCCCCcCEEeEecCCCCc
Q 010426 396 LRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKML-----SSKGFQSLTSLEFLWIDDCPNLT 462 (511)
Q Consensus 396 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~l~~L~~L~l~~c~~l~ 462 (511)
|+.|.+.+ -. +...+.... ...+.+|+.||||.-.+...- ..+.-..+|.|+.|+.++ ..+.
T Consensus 197 Lq~L~mrn--Le-~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~ 263 (699)
T KOG3665|consen 197 LQVLSMRN--LE-FESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDIN 263 (699)
T ss_pred HHHHhccC--CC-CCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchh
Confidence 99888887 22 333232111 145788999999875533211 012233478888888886 3443
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.38 E-value=1.3e-05 Score=80.63 Aligned_cols=93 Identities=25% Similarity=0.246 Sum_probs=72.9
Q ss_pred ceeccEeecCCCccccCCccccccccccEEeccCccccccccc-cccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 4 WKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPS-KLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
++.|+.|+|++|.+.... .+.++++|++|||++| .+..+|. +...+. |+.|++++|. ++++ .++.+|++|+.||
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhhhccc
Confidence 567899999999998774 7889999999999999 8888884 334555 9999999999 7777 5899999999999
Q ss_pred ceeeecCCCccCcccccccc
Q 010426 83 NFIVGTDTKSSGLKDLKSLA 102 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~ 102 (511)
++.+-+..- ..+.-+..|.
T Consensus 261 lsyNll~~h-seL~pLwsLs 279 (1096)
T KOG1859|consen 261 LSYNLLSEH-SELEPLWSLS 279 (1096)
T ss_pred hhHhhhhcc-hhhhHHHHHH
Confidence 888766443 3333344444
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.25 E-value=1.4e-05 Score=63.54 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=72.0
Q ss_pred CceeccEeecCCCccccCCcccccc-ccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSL-INLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l-~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
+...|...+|++|.+...|+.|... +-+++|+|++| .+.++|..+..++.|+.|+++.|. +...|..+..|.+|-+|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHh
Confidence 4467888999999999999887654 58999999999 899999889999999999999999 88888778889999988
Q ss_pred Cceeeec
Q 010426 82 SNFIVGT 88 (511)
Q Consensus 82 ~~~~~~~ 88 (511)
+.-++..
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 8554443
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.05 E-value=0.00012 Score=65.40 Aligned_cols=196 Identities=18% Similarity=0.161 Sum_probs=115.7
Q ss_pred ceeccEeecCCCccc-----cCCccccccccccEEeccCccccc----ccc-------ccccCcCccceEEecCcccccc
Q 010426 4 WKHLRYLNLSDTRIR-----NLPKPTCSLINLQVLLLRDCYYLL----KLP-------SKLRNLINLRHLDIMGAYLIKE 67 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~n~~~~----~l~-------~~~~~l~~L~~L~l~~~~~l~~ 67 (511)
+..+..++||+|.|. .+..-+..-.+|++.+++.- .+. .++ ..+-++++|+..++|+|.+-.+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 567888999999886 34445667788999988864 222 222 2356899999999999984445
Q ss_pred cCCc----ccCcCCCccCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecc
Q 010426 68 IPFG----MKELKNLQALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQ 143 (511)
Q Consensus 68 l~~~----l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 143 (511)
.|+. ++.-+.|.+|.+++++.... .+-.-=+.|.++. ........+.|+.+....|++
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~rigkal~~la-----------------~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRIGKALFHLA-----------------YNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCcc-chhHHHHHHHHHH-----------------HHhhhccCCCceEEEeccchh
Confidence 4433 56778899998887776443 2211111222110 112344567888888877721
Q ss_pred cccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCccC--C--cccCCCCCCCccEEEEecCCCCCCCC-----CC
Q 010426 144 LQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKKI--P--SWIADPSFSKMEVLGLENCENCTSLP-----SF 214 (511)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~~L~~L~l~~~~~~~~~~-----~l 214 (511)
. ..........++....|+.+.+..|++..- . .+.+...+++|++|+++.|.+...-+ .+
T Consensus 170 e-----------ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 170 E-----------NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred c-----------cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 1 111111223444456888888888876421 1 11122257889999998886432211 22
Q ss_pred CCCCCccEEEecCCc
Q 010426 215 GLLSSLKHLTVKGLR 229 (511)
Q Consensus 215 ~~l~~L~~L~l~~~~ 229 (511)
..-+.|++|.+.+|-
T Consensus 239 ~~W~~lrEL~lnDCl 253 (388)
T COG5238 239 CEWNLLRELRLNDCL 253 (388)
T ss_pred cccchhhhccccchh
Confidence 233456777776664
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.03 E-value=5.5e-05 Score=77.58 Aligned_cols=185 Identities=22% Similarity=0.224 Sum_probs=118.9
Q ss_pred CCCCCCEEEEEccCCcceec---ccCCCCCcCeEeeccC-ccccccc----ccccCCCCcCeEEecCCCCCcccCCC---
Q 010426 295 KNSQLESLCIRYCDSLTFIA---RRKLPSSLKWLEIENC-EKLESLP----NDMHELNYLQHLCINRCPSIVRFPEE--- 363 (511)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~-~~l~~l~----~~~~~~~~L~~L~l~~~~~l~~~~~~--- 363 (511)
..+.|+.+.+..|..+.... .....+.|+.|++++| ......+ .....+++|++|+++++..+++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 37889999999987777632 1222269999999883 3332222 34467799999999999767765433
Q ss_pred CCCCCCceEEEEecccccccchhhh-hhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCC---cCCccc
Q 010426 364 GFPTNLVELEIRRVDVKMYKAIIHW-GLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGF---RNLKML 439 (511)
Q Consensus 364 ~~~~~L~~L~l~~~~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~l 439 (511)
..+++|+.|.+. .|..+++.... ...+++.|+.|++++ |.. +++...... ...+++|+++.+.++ ..++..
T Consensus 266 ~~c~~L~~L~l~--~c~~lt~~gl~~i~~~~~~L~~L~l~~-c~~-~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 266 SRCPNLETLSLS--NCSNLTDEGLVSIAERCPSLRELDLSG-CHG-LTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred hhCCCcceEccC--CCCccchhHHHHHHHhcCcccEEeeec-Ccc-chHHHHHHH-HHhCcchhhhhhhhcCCCccHHHH
Confidence 347899999987 78876654433 345889999999999 555 433221011 245777777665544 345554
Q ss_pred CccccCCCC--CcCEEeEecCCCCcccCCCCCC-Cccc-EEEecCCcch
Q 010426 440 SSKGFQSLT--SLEFLWIDDCPNLTSFPEAGLP-SSIL-WLNIWSCPKL 484 (511)
Q Consensus 440 ~~~~~~~l~--~L~~L~l~~c~~l~~~~~~~~~-~~L~-~L~l~~c~~l 484 (511)
...+..... .+..+.+.+|++++........ .... .+.+.+|+.|
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 333333333 6888888999999876442221 2233 5788899988
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.0014 Score=56.09 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=67.1
Q ss_pred hhhhhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCC--CCCCCCCCCCCccEEEecCCccceEecc
Q 010426 159 EELVLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENC--TSLPSFGLLSSLKHLTVKGLRKLKSMGY 236 (511)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 236 (511)
+...+..|..++.|..|.+++|.+..+...+.. .+++|+.|.+.+|... +++..+..+|+|+.|.+-+|+....-.+
T Consensus 53 dl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 53 DLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred chhhcccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCc
Confidence 555567788888999999999998888766653 5788999999998743 4555788889999999988763332221
Q ss_pred CCCCCCCCCCCCeEEcCCC
Q 010426 237 GEHCSNPFQSLETLWFEDL 255 (511)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~~ 255 (511)
....+-.+|+|+.||++..
T Consensus 132 R~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeEEEEecCcceEeehhhh
Confidence 1122233666777776654
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.0015 Score=59.27 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=25.2
Q ss_pred CCCCCCEEEEEccCCcceecccCCC-CCcCeEeeccCcc-cccccccccCCCCcCeEEecCC
Q 010426 295 KNSQLESLCIRYCDSLTFIARRKLP-SSLKWLEIENCEK-LESLPNDMHELNYLQHLCINRC 354 (511)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~~~~~~~~-~~L~~L~l~~~~~-l~~l~~~~~~~~~L~~L~l~~~ 354 (511)
.+|.|+.|+++.|+.-..+...+.| .+|+++.+.+..- .+.....+..+|.++.|.++.|
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4445555555443332222222222 4555555555411 1112223344555555555555
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.001 Score=59.40 Aligned_cols=40 Identities=25% Similarity=0.128 Sum_probs=17.5
Q ss_pred ccccccccEEeccCc--cccccccccccCcCccceEEecCcc
Q 010426 24 TCSLINLQVLLLRDC--YYLLKLPSKLRNLINLRHLDIMGAY 63 (511)
Q Consensus 24 ~~~l~~L~~L~L~~n--~~~~~l~~~~~~l~~L~~L~l~~~~ 63 (511)
|..+++|+.|.++.| .....++.-...+++|++|++++|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 334455555555544 2222233223334555555555554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=8.8e-05 Score=66.38 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=22.3
Q ss_pred cCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEec
Q 010426 346 LQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 346 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
.++|+..+| .++++.....|+.|+.|.| +.|+++.+. .+..|++|+.|.|+.
T Consensus 21 vkKLNcwg~-~L~DIsic~kMp~lEVLsL---SvNkIssL~--pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 21 VKKLNCWGC-GLDDISICEKMPLLEVLSL---SVNKISSLA--PLQRCTRLKELYLRK 72 (388)
T ss_pred hhhhcccCC-CccHHHHHHhcccceeEEe---eccccccch--hHHHHHHHHHHHHHh
Confidence 344444444 4444444444444555544 233333322 234444444444444
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.30 E-value=0.0016 Score=34.53 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=11.0
Q ss_pred ccEeecCCCccccCCcccc
Q 010426 7 LRYLNLSDTRIRNLPKPTC 25 (511)
Q Consensus 7 Lr~L~L~~n~i~~l~~~~~ 25 (511)
||+|+|++|+|+.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666665555444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.10 E-value=0.0033 Score=56.22 Aligned_cols=106 Identities=20% Similarity=0.057 Sum_probs=62.3
Q ss_pred CCCCCEEEEEccCCcceecccCCCCCcCeEeeccC--cccccccccccCCCCcCeEEecCCCCCcc---cCCCCCCCCCc
Q 010426 296 NSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENC--EKLESLPNDMHELNYLQHLCINRCPSIVR---FPEEGFPTNLV 370 (511)
Q Consensus 296 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~--~~l~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~~~~~~~L~ 370 (511)
+..|+.+.+.++. ++.+......++|+.|.++.| .....++.....+|+|+++++++| .+.. +.+...+.+|.
T Consensus 42 ~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence 4455666655543 222221112258888888888 555555556666788888888888 4443 33334556777
Q ss_pred eEEEEecccccccchhhhhhccCCcccEEEEec
Q 010426 371 ELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 371 ~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
.|++..+...++.+--...+.-+++|++|+-..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 888864444444443344455677777776544
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.00088 Score=57.38 Aligned_cols=77 Identities=19% Similarity=0.070 Sum_probs=49.3
Q ss_pred chhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcc
Q 010426 384 AIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTS 463 (511)
Q Consensus 384 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~ 463 (511)
......+..+++++.|.+.+ |.. +.+..- +......++|+.|+|++|+.+++-..+.+..+++|+.|.|.+.+.+..
T Consensus 115 ~eGle~L~~l~~i~~l~l~~-ck~-~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 115 YEGLEHLRDLRSIKSLSLAN-CKY-FDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHHHHHHhccchhhhheecc-ccc-hhhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 33333445566666666666 544 555443 333345678888888888888876556677788888888877665543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0054 Score=32.52 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=9.6
Q ss_pred cceEEecCcccccccCCccc
Q 010426 54 LRHLDIMGAYLIKEIPFGMK 73 (511)
Q Consensus 54 L~~L~l~~~~~l~~l~~~l~ 73 (511)
|++|++++|. ++.+|++|+
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 4555555554 445554443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.85 E-value=0.036 Score=45.11 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=41.7
Q ss_pred ccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccc
Q 010426 340 MHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEM 417 (511)
Q Consensus 340 ~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 417 (511)
+..+++|+.+.+.. .++.++.. ..+++|+.+.+. + .+..+....+..+++|+.+.+.+ . +..++...+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~--~--~~~~i~~~~F~~~~~l~~i~~~~-~---~~~i~~~~F 77 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFP--N--NLTSIGDNAFSNCKSLESITFPN-N---LKSIGDNAF 77 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEES--S--TTSCE-TTTTTT-TT-EEEEETS-T---T-EE-TTTT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccc--c--cccccceeeeecccccccccccc-c---ccccccccc
Confidence 44555566665553 23333322 233456666553 2 24444444556666666666644 1 344443122
Q ss_pred cccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEe
Q 010426 418 GMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWID 456 (511)
Q Consensus 418 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~ 456 (511)
..+++|+.+++.. +++.++...+.++ .|+.+.+.
T Consensus 78 --~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 78 --SNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp --TT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred --cccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 3456666666654 2555554556665 66666654
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.0013 Score=56.47 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC---CCCCCCceEEEEecccccccchhhhhhccCCcc
Q 010426 320 SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE---GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSL 396 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L 396 (511)
..++.++-+++.....-...+..++.++.|.+.+|..+.+.... +..++|+.|+++ +|..+++.....+.++++|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~ls--gC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLS--GCPRITDGGLACLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeecc--CCCeechhHHHHHHHhhhh
Confidence 35677777777554444556678888899999999887775332 466899999998 8999998888888999999
Q ss_pred cEEEEec
Q 010426 397 RRLWIEG 403 (511)
Q Consensus 397 ~~L~l~~ 403 (511)
+.|++.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 9998887
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.87 E-value=0.2 Score=40.69 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=45.0
Q ss_pred CcCeEeeccCccccccc-ccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCccc
Q 010426 321 SLKWLEIENCEKLESLP-NDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLR 397 (511)
Q Consensus 321 ~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~ 397 (511)
+|+.+.+.. .++.+. ..+.++++|+.+.+.+. ++.++.. ..+++++.+.+. . .+..+....+..+++|+
T Consensus 13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~--~--~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP--N--NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET--S--TT-EE-TTTTTT-TTEC
T ss_pred CCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc--c--ccccccccccccccccc
Confidence 455555543 233332 24556666777766653 4444332 334456666662 1 44444444566677777
Q ss_pred EEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcC
Q 010426 398 RLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLE 451 (511)
Q Consensus 398 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~ 451 (511)
.+.+.. . +..++. ..+ ... +|+.+.+.+ .++.++...|.++++|+
T Consensus 85 ~i~~~~-~---~~~i~~-~~f-~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPS-N---ITEIGS-SSF-SNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETT-T----BEEHT-TTT-TT--T--EEE-TT--B-SS----GGG------
T ss_pred ccccCc-c---ccEEch-hhh-cCC-CceEEEECC--CccEECCccccccccCC
Confidence 777754 1 444444 221 334 677777664 35666656667666653
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.0017 Score=58.43 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=63.2
Q ss_pred ceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccC--CcccCcCCCccC
Q 010426 4 WKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIP--FGMKELKNLQAL 81 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L 81 (511)
+.+.++|+.+++.+..|. ....|+-|++|.|+-| .+..+.. +..+++|++|.|..|. |..+. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 556788999999998662 2457899999999999 7777765 8899999999999998 66553 236788888888
Q ss_pred Cceeeec
Q 010426 82 SNFIVGT 88 (511)
Q Consensus 82 ~~~~~~~ 88 (511)
.+..+..
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 7655543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.58 E-value=0.015 Score=28.49 Aligned_cols=16 Identities=50% Similarity=0.893 Sum_probs=6.3
Q ss_pred eccEeecCCCccccCC
Q 010426 6 HLRYLNLSDTRIRNLP 21 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~ 21 (511)
+||.|++++|++..+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.52 E-value=0.002 Score=56.37 Aligned_cols=84 Identities=19% Similarity=0.126 Sum_probs=71.4
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
.+.++.++||++.|+...+-..|+-+..|..|+++-| .+..+|..++.+..++.+++..|. ..+.|.+++.+++++.+
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence 4677888999999988877777888889999999988 888889889999999999998888 88999999999999988
Q ss_pred Cceeee
Q 010426 82 SNFIVG 87 (511)
Q Consensus 82 ~~~~~~ 87 (511)
+...+.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 865543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.13 E-value=0.035 Score=27.23 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=6.4
Q ss_pred ccceEeecCCcCCccc
Q 010426 424 SLSYLNIIGFRNLKML 439 (511)
Q Consensus 424 ~L~~L~l~~~~~l~~l 439 (511)
+|++|++++|. ++++
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 45555555555 5444
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.15 E-value=0.066 Score=48.37 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=25.9
Q ss_pred ccccccccccEEeccCcccccccccc----ccCcCccceEEecCcc
Q 010426 22 KPTCSLINLQVLLLRDCYYLLKLPSK----LRNLINLRHLDIMGAY 63 (511)
Q Consensus 22 ~~~~~l~~L~~L~L~~n~~~~~l~~~----~~~l~~L~~L~l~~~~ 63 (511)
.++-.||+|+..+|+.|-.-.+.|+. +++-+.|.+|.+++|+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34456677777777777332333322 4566777777777776
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.94 E-value=0.1 Score=28.77 Aligned_cols=20 Identities=35% Similarity=0.590 Sum_probs=14.6
Q ss_pred ceeccEeecCCCccccCCcc
Q 010426 4 WKHLRYLNLSDTRIRNLPKP 23 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~ 23 (511)
+++|+.|+|++|+|..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677888888888777754
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.94 E-value=0.1 Score=28.77 Aligned_cols=20 Identities=35% Similarity=0.590 Sum_probs=14.6
Q ss_pred ceeccEeecCCCccccCCcc
Q 010426 4 WKHLRYLNLSDTRIRNLPKP 23 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~ 23 (511)
+++|+.|+|++|+|..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677888888888777754
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.50 E-value=0.28 Score=27.08 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=9.0
Q ss_pred CCcCEEeEecCCCCcc
Q 010426 448 TSLEFLWIDDCPNLTS 463 (511)
Q Consensus 448 ~~L~~L~l~~c~~l~~ 463 (511)
++|++|+|++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4555556666555554
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.71 E-value=0.33 Score=26.72 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=13.8
Q ss_pred cCccceEEecCcccccccCCc
Q 010426 51 LINLRHLDIMGAYLIKEIPFG 71 (511)
Q Consensus 51 l~~L~~L~l~~~~~l~~l~~~ 71 (511)
+++|+.|++++|. +..+|.+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 4567777777777 7777655
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.71 E-value=0.33 Score=26.72 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=13.8
Q ss_pred cCccceEEecCcccccccCCc
Q 010426 51 LINLRHLDIMGAYLIKEIPFG 71 (511)
Q Consensus 51 l~~L~~L~l~~~~~l~~l~~~ 71 (511)
+++|+.|++++|. +..+|.+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 4567777777777 7777655
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.30 E-value=0.03 Score=49.31 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=58.5
Q ss_pred CCCceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCccccccc
Q 010426 1 MSGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEI 68 (511)
Q Consensus 1 ~~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l 68 (511)
|+.+++|..|+++-|+|..+|++++....++.+++..| .....|.++++++.+++++.-.|.+...+
T Consensus 61 ~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKKTEFFRKL 127 (326)
T ss_pred hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhccCcchHHH
Confidence 34567888999999999999999999999999999998 77889999999999999999999844333
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.28 E-value=0.87 Score=25.05 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=12.7
Q ss_pred eeccEeecCCCccccCCc
Q 010426 5 KHLRYLNLSDTRIRNLPK 22 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~~ 22 (511)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777765
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.36 E-value=1.6 Score=24.10 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=10.9
Q ss_pred ceeccEeecCCCccccC
Q 010426 4 WKHLRYLNLSDTRIRNL 20 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l 20 (511)
+++|+.|+++.|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35667777777776544
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=67.50 E-value=2.6 Score=22.51 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=4.9
Q ss_pred ccccEEeccCc
Q 010426 28 INLQVLLLRDC 38 (511)
Q Consensus 28 ~~L~~L~L~~n 38 (511)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 45555555555
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.16 E-value=5.7 Score=22.24 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=8.7
Q ss_pred eeccEeecCCCccc
Q 010426 5 KHLRYLNLSDTRIR 18 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~ 18 (511)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.39 E-value=8.5 Score=38.93 Aligned_cols=86 Identities=13% Similarity=-0.010 Sum_probs=52.1
Q ss_pred CCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccC--c-
Q 010426 365 FPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLS--S- 441 (511)
Q Consensus 365 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~- 441 (511)
..|.+..+.+++|..-.++++.. ..+..|+|..|+|++|... +...+.+.- .....|++|.+.||+--++.. .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~N~~~-~~~~~el~K--~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSHNHSK-ISSESELDK--LKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred CCcceeeeecccchhhchhhhhH-HHHhcchhheeecccchhh-hcchhhhhh--hcCCCHHHeeecCCccccchhhhHH
Confidence 44678888886555555555442 2357789999999993222 443332122 445678899999988444321 1
Q ss_pred ---cccCCCCCcCEEe
Q 010426 442 ---KGFQSLTSLEFLW 454 (511)
Q Consensus 442 ---~~~~~l~~L~~L~ 454 (511)
+.-..||+|..|+
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 2223588887765
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.73 E-value=10 Score=38.39 Aligned_cols=60 Identities=23% Similarity=0.245 Sum_probs=26.9
Q ss_pred ceeccEeecCCCccccCC--ccc-cccccccEEeccCccccccccccccCc--CccceEEecCcc
Q 010426 4 WKHLRYLNLSDTRIRNLP--KPT-CSLINLQVLLLRDCYYLLKLPSKLRNL--INLRHLDIMGAY 63 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~--~~~-~~l~~L~~L~L~~n~~~~~l~~~~~~l--~~L~~L~l~~~~ 63 (511)
.+.+..++|++|++..+. .++ .--|+|+.|+|++|........++.++ ..|++|-+.+|.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 344555666666554431 111 223566666666652111111223332 235555565555
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=45.97 E-value=39 Score=21.24 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=18.1
Q ss_pred CCcCEEeEecCCCCcccCCCCCCCcccEEEecC
Q 010426 448 TSLEFLWIDDCPNLTSFPEAGLPSSILWLNIWS 480 (511)
Q Consensus 448 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 480 (511)
+++++|.+.+ ..-..+....+|+++++|.+..
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEeeC
Confidence 4566677733 2222233455677787777654
Done!