Query 010426
Match_columns 511
No_of_seqs 177 out of 2274
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 06:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.7E-36 1.3E-40 322.9 16.0 474 2-505 197-766 (768)
2 3t6q_A CD180 antigen; protein- 100.0 3.2E-33 1.1E-37 293.2 28.3 290 171-483 255-559 (606)
3 3vq2_A TLR4, TOLL-like recepto 100.0 7.7E-33 2.6E-37 290.4 31.0 262 193-482 283-556 (606)
4 3rgz_A Protein brassinosteroid 100.0 9.5E-34 3.2E-38 304.2 21.1 450 2-483 74-550 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-33 8.2E-38 294.2 23.6 426 5-482 32-532 (606)
6 3t6q_A CD180 antigen; protein- 100.0 4.3E-32 1.5E-36 284.7 29.0 431 5-482 33-534 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.2E-32 1.8E-36 287.8 28.8 102 1-104 45-150 (680)
8 1ziw_A TOLL-like receptor 3; i 100.0 9.9E-32 3.4E-36 285.7 29.1 455 5-481 25-570 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 4.2E-32 1.4E-36 282.7 22.9 423 5-482 28-529 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-30 9.4E-35 280.2 32.1 285 170-482 266-558 (844)
11 4eco_A Uncharacterized protein 100.0 6.7E-32 2.3E-36 283.4 18.3 389 5-459 81-598 (636)
12 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-30 7.3E-35 281.0 30.2 445 4-482 23-537 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-31 1.1E-35 274.7 21.5 428 5-482 26-508 (549)
14 4ecn_A Leucine-rich repeat pro 100.0 3.9E-31 1.3E-35 282.5 22.1 415 5-485 323-873 (876)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-30 3.7E-35 268.8 23.5 193 271-482 273-479 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-30 5.5E-35 269.5 24.7 408 1-460 46-509 (549)
17 4eco_A Uncharacterized protein 100.0 1.4E-31 4.7E-36 281.0 15.3 359 17-440 195-603 (636)
18 2z63_A TOLL-like receptor 4, v 100.0 4.4E-30 1.5E-34 267.5 20.8 410 1-461 48-531 (570)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-28 4.4E-33 255.6 26.3 430 5-482 31-508 (562)
20 1jl5_A Outer protein YOPM; leu 100.0 2.9E-29 9.8E-34 252.2 19.9 391 3-484 9-429 (454)
21 1o6v_A Internalin A; bacterial 100.0 5.8E-28 2E-32 244.7 26.1 341 4-458 45-385 (466)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-28 3.7E-33 253.9 21.1 417 5-459 21-479 (520)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-27 4.9E-32 251.7 27.1 199 272-482 369-578 (635)
24 4ecn_A Leucine-rich repeat pro 100.0 2.5E-27 8.5E-32 253.2 27.5 411 28-484 323-840 (876)
25 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-27 1.6E-31 247.8 25.2 431 6-482 53-553 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 4.4E-27 1.5E-31 237.8 24.0 379 8-461 13-408 (455)
27 1o6v_A Internalin A; bacterial 100.0 9.1E-27 3.1E-31 235.9 24.8 296 2-374 65-360 (466)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3E-27 1E-31 245.3 20.1 405 5-460 52-509 (562)
29 3bz5_A Internalin-J, INLJ; leu 99.9 2.7E-26 9.3E-31 230.7 21.4 263 3-361 40-303 (457)
30 4fmz_A Internalin; leucine ric 99.9 1.8E-25 6.2E-30 217.6 22.2 236 169-459 109-344 (347)
31 3o6n_A APL1; leucine-rich repe 99.9 2.7E-25 9.3E-30 219.8 23.6 305 26-482 43-350 (390)
32 3v47_A TOLL-like receptor 5B a 99.9 4.8E-25 1.6E-29 222.8 22.8 358 30-481 12-405 (455)
33 1jl5_A Outer protein YOPM; leu 99.9 6.1E-25 2.1E-29 220.6 23.0 371 21-483 5-408 (454)
34 3bz5_A Internalin-J, INLJ; leu 99.9 2E-24 6.9E-29 217.0 23.9 316 21-465 35-355 (457)
35 4fmz_A Internalin; leucine ric 99.9 4.3E-25 1.5E-29 214.9 18.4 299 3-403 42-342 (347)
36 3oja_B Anopheles plasmodium-re 99.9 1.8E-24 6E-29 225.7 23.7 303 26-459 49-356 (597)
37 2id5_A Lingo-1, leucine rich r 99.9 3.7E-24 1.3E-28 217.6 24.9 311 8-437 14-333 (477)
38 2id5_A Lingo-1, leucine rich r 99.9 1E-23 3.5E-28 214.3 23.5 286 5-403 32-329 (477)
39 3o6n_A APL1; leucine-rich repe 99.9 8E-23 2.7E-27 202.1 20.4 305 3-437 43-352 (390)
40 3oja_B Anopheles plasmodium-re 99.9 3.4E-22 1.2E-26 208.4 20.1 305 3-437 49-358 (597)
41 2ft3_A Biglycan; proteoglycan, 99.9 3.5E-21 1.2E-25 185.9 24.1 287 28-459 33-331 (332)
42 1xku_A Decorin; proteoglycan, 99.9 7.3E-21 2.5E-25 183.5 22.7 128 321-458 193-329 (330)
43 3ogk_B Coronatine-insensitive 99.9 3.6E-23 1.2E-27 216.3 0.1 135 321-463 379-527 (592)
44 4fcg_A Uncharacterized protein 99.8 1.2E-20 4.1E-25 181.4 15.7 207 4-256 80-288 (328)
45 1xku_A Decorin; proteoglycan, 99.8 1.5E-19 5.2E-24 174.3 23.1 261 170-483 31-305 (330)
46 2ft3_A Biglycan; proteoglycan, 99.8 2.5E-19 8.7E-24 172.8 22.0 281 170-482 33-331 (332)
47 3ogk_B Coronatine-insensitive 99.8 5E-22 1.7E-26 207.6 2.5 416 3-457 71-547 (592)
48 3g06_A SSPH2 (leucine-rich rep 99.8 7.2E-19 2.5E-23 182.0 23.5 153 5-229 40-192 (622)
49 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-18 8.7E-23 177.9 26.2 195 170-434 101-295 (622)
50 1ogq_A PGIP-2, polygalacturona 99.8 4E-20 1.4E-24 176.7 9.7 84 5-88 50-137 (313)
51 3zyj_A Leucine-rich repeat-con 99.8 2.7E-18 9.3E-23 172.2 22.1 240 171-459 44-290 (440)
52 3zyi_A Leucine-rich repeat-con 99.8 3.8E-18 1.3E-22 171.8 22.7 239 172-459 56-301 (452)
53 4fcg_A Uncharacterized protein 99.8 2.2E-19 7.5E-24 172.6 11.8 199 2-254 101-310 (328)
54 1z7x_W Ribonuclease inhibitor; 99.8 7.9E-22 2.7E-26 199.5 -6.0 83 4-88 2-97 (461)
55 2z80_A TOLL-like receptor 2, v 99.8 1.2E-18 4.2E-23 169.5 15.9 268 4-375 30-309 (353)
56 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-20 6.4E-25 189.5 1.5 375 27-482 2-438 (461)
57 2z80_A TOLL-like receptor 2, v 99.8 4.7E-18 1.6E-22 165.4 18.5 265 170-458 31-311 (353)
58 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-20 7.8E-25 178.8 0.9 196 274-485 99-300 (317)
59 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-19 5.7E-24 172.8 7.0 256 6-403 11-271 (317)
60 2p1m_B Transport inhibitor res 99.8 4.6E-21 1.6E-25 200.4 -5.4 16 24-39 62-77 (594)
61 2p1m_B Transport inhibitor res 99.8 9E-21 3.1E-25 198.2 -4.8 414 3-457 64-540 (594)
62 3zyj_A Leucine-rich repeat-con 99.8 1.9E-17 6.5E-22 166.1 19.4 75 8-86 46-122 (440)
63 3zyi_A Leucine-rich repeat-con 99.8 1.7E-17 5.7E-22 167.1 18.6 75 8-86 57-133 (452)
64 2z66_A Variable lymphocyte rec 99.7 1.8E-17 6E-22 158.0 16.4 53 172-229 9-63 (306)
65 1ogq_A PGIP-2, polygalacturona 99.7 6.6E-18 2.3E-22 161.3 13.1 244 170-463 50-306 (313)
66 1wwl_A Monocyte differentiatio 99.7 8.6E-19 2.9E-23 167.4 6.3 78 272-354 226-306 (312)
67 2z66_A Variable lymphocyte rec 99.7 6.1E-18 2.1E-22 161.2 11.7 242 8-309 10-260 (306)
68 1ozn_A Reticulon 4 receptor; N 99.7 8.4E-17 2.9E-21 151.6 14.9 76 8-87 14-91 (285)
69 1ozn_A Reticulon 4 receptor; N 99.7 5.1E-16 1.8E-20 146.2 19.4 52 173-229 14-67 (285)
70 2xwt_C Thyrotropin receptor; s 99.7 3E-16 1E-20 143.7 16.8 199 274-484 31-239 (239)
71 3oja_A Leucine-rich immune mol 99.7 2.9E-17 1E-21 166.4 9.7 235 166-456 30-270 (487)
72 1p9a_G Platelet glycoprotein I 99.7 6.4E-16 2.2E-20 145.6 17.7 196 271-482 7-206 (290)
73 2xwt_C Thyrotropin receptor; s 99.7 1.7E-16 5.7E-21 145.4 12.8 82 6-88 32-117 (239)
74 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.6E-21 152.4 11.1 80 4-88 40-119 (308)
75 2o6q_A Variable lymphocyte rec 99.7 2E-15 6.8E-20 140.9 19.1 193 275-482 17-216 (270)
76 2o6q_A Variable lymphocyte rec 99.7 1.1E-15 3.8E-20 142.6 16.5 196 6-256 17-216 (270)
77 4ay9_X Follicle-stimulating ho 99.7 2.8E-15 9.4E-20 145.5 19.1 235 173-457 12-255 (350)
78 1p9a_G Platelet glycoprotein I 99.7 4.8E-16 1.6E-20 146.4 12.4 197 2-256 7-206 (290)
79 1wwl_A Monocyte differentiatio 99.6 1.3E-16 4.4E-21 152.3 7.2 109 128-256 198-307 (312)
80 3oja_A Leucine-rich immune mol 99.6 8.9E-16 3E-20 155.5 11.9 215 193-461 32-250 (487)
81 2z62_A TOLL-like receptor 4, v 99.6 2E-15 7E-20 141.3 11.4 84 6-91 29-115 (276)
82 4ay9_X Follicle-stimulating ho 99.6 1.7E-14 5.7E-19 139.9 17.8 236 7-353 11-255 (350)
83 2z62_A TOLL-like receptor 4, v 99.6 1.9E-14 6.6E-19 134.7 17.5 109 340-459 120-235 (276)
84 1h6u_A Internalin H; cell adhe 99.6 1.3E-14 4.5E-19 137.9 14.7 195 244-466 40-234 (308)
85 1h6t_A Internalin B; cell adhe 99.6 2.7E-15 9.3E-20 141.4 9.8 168 3-229 44-211 (291)
86 3rfs_A Internalin B, repeat mo 99.6 4.8E-15 1.7E-19 138.4 10.9 176 271-459 38-216 (272)
87 4glp_A Monocyte differentiatio 99.6 1.7E-14 6E-19 137.4 13.3 197 272-482 89-305 (310)
88 3m19_A Variable lymphocyte rec 99.6 5.5E-14 1.9E-18 129.5 16.1 173 274-459 14-190 (251)
89 3m19_A Variable lymphocyte rec 99.6 4.7E-14 1.6E-18 130.0 15.3 172 298-482 15-190 (251)
90 4glp_A Monocyte differentiatio 99.6 5E-15 1.7E-19 141.2 8.8 204 5-256 91-305 (310)
91 3rfs_A Internalin B, repeat mo 99.5 7.5E-14 2.5E-18 130.3 15.5 172 295-480 39-214 (272)
92 2ast_B S-phase kinase-associat 99.5 5.9E-16 2E-20 149.5 0.6 77 7-87 49-129 (336)
93 1m9s_A Internalin B; cell inva 99.5 1.3E-14 4.6E-19 149.8 9.7 168 3-229 41-208 (605)
94 2ast_B S-phase kinase-associat 99.5 1.8E-16 6.2E-21 153.1 -4.2 150 29-229 48-206 (336)
95 4ezg_A Putative uncharacterize 99.5 2.8E-14 9.5E-19 126.3 8.9 148 4-229 43-192 (197)
96 2ca6_A RAN GTPase-activating p 99.5 1.2E-15 4.3E-20 150.1 -2.0 75 13-88 17-106 (386)
97 1h6t_A Internalin B; cell adhe 99.5 2.1E-13 7E-18 128.5 12.4 174 271-465 43-216 (291)
98 1xeu_A Internalin C; cellular 99.5 2.5E-14 8.4E-19 132.7 5.9 167 3-229 17-183 (263)
99 4ezg_A Putative uncharacterize 99.4 4.8E-13 1.6E-17 118.3 11.8 149 294-458 41-191 (197)
100 1m9s_A Internalin B; cell inva 99.4 1.6E-13 5.5E-18 141.8 8.1 175 271-466 40-214 (605)
101 3cvr_A Invasion plasmid antige 99.4 3.2E-12 1.1E-16 130.7 15.9 175 246-459 60-241 (571)
102 3e6j_A Variable lymphocyte rec 99.4 2.1E-12 7.3E-17 116.9 13.1 138 310-459 31-170 (229)
103 3cvr_A Invasion plasmid antige 99.4 4.5E-12 1.5E-16 129.6 16.5 178 219-438 60-244 (571)
104 1xeu_A Internalin C; cellular 99.4 4.5E-13 1.5E-17 124.1 8.1 146 3-207 39-184 (263)
105 3e6j_A Variable lymphocyte rec 99.4 2.7E-12 9.2E-17 116.3 13.0 147 6-229 20-170 (229)
106 2v9t_B SLIT homolog 2 protein 99.4 6.4E-12 2.2E-16 113.0 13.6 146 301-459 15-163 (220)
107 2ca6_A RAN GTPase-activating p 99.4 2.8E-14 9.5E-19 140.5 -2.4 247 3-284 30-313 (386)
108 2ell_A Acidic leucine-rich nuc 99.3 4.7E-12 1.6E-16 108.8 11.3 137 318-466 22-164 (168)
109 2v70_A SLIT-2, SLIT homolog 2 99.3 6.9E-12 2.4E-16 112.8 12.9 146 301-459 15-164 (220)
110 2xot_A Amphoterin-induced prot 99.3 4.5E-12 1.5E-16 123.3 12.4 170 277-459 21-200 (361)
111 2v9t_B SLIT homolog 2 protein 99.3 6.9E-12 2.4E-16 112.8 12.5 146 277-434 14-163 (220)
112 3goz_A Leucine-rich repeat-con 99.3 1E-13 3.5E-18 135.1 0.4 78 9-88 2-92 (362)
113 2o6s_A Variable lymphocyte rec 99.3 1.9E-11 6.4E-16 109.0 14.2 128 320-458 28-158 (208)
114 3goz_A Leucine-rich repeat-con 99.3 2.4E-13 8.2E-18 132.4 1.8 85 4-90 21-123 (362)
115 2v70_A SLIT-2, SLIT homolog 2 99.3 1.5E-11 5.2E-16 110.5 13.1 147 322-482 13-164 (220)
116 2xot_A Amphoterin-induced prot 99.3 6.7E-12 2.3E-16 122.1 11.0 169 300-482 21-200 (361)
117 2ell_A Acidic leucine-rich nuc 99.3 3.5E-12 1.2E-16 109.6 6.3 82 4-88 23-107 (168)
118 2o6s_A Variable lymphocyte rec 99.3 2.1E-11 7.4E-16 108.6 11.4 157 290-465 21-182 (208)
119 3sb4_A Hypothetical leucine ri 99.2 3.7E-12 1.3E-16 122.3 5.3 123 320-454 202-327 (329)
120 1dce_A Protein (RAB geranylger 99.2 3.4E-14 1.2E-18 145.9 -9.6 206 25-280 346-566 (567)
121 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.9E-16 103.4 7.7 128 320-457 17-149 (149)
122 2wfh_A SLIT homolog 2 protein 99.2 9.3E-11 3.2E-15 102.9 10.7 77 7-87 12-89 (193)
123 2je0_A Acidic leucine-rich nuc 99.2 7.2E-12 2.5E-16 105.2 2.6 82 3-87 15-99 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.2 5E-11 1.7E-15 103.1 8.0 128 320-457 19-149 (176)
125 3sb4_A Hypothetical leucine ri 99.2 1.6E-10 5.5E-15 110.8 12.1 219 4-253 48-305 (329)
126 1a9n_A U2A', U2A'; complex (nu 99.1 1.7E-11 5.7E-16 106.2 3.9 82 3-88 17-100 (176)
127 1w8a_A SLIT protein; signaling 99.1 2.5E-10 8.7E-15 100.1 10.6 71 382-458 66-136 (192)
128 2wfh_A SLIT homolog 2 protein 99.1 2.7E-10 9.3E-15 99.9 10.8 96 301-403 14-111 (193)
129 1w8a_A SLIT protein; signaling 99.1 2.4E-10 8.3E-15 100.3 9.1 77 7-87 10-89 (192)
130 2o6r_A Variable lymphocyte rec 99.1 1.1E-09 3.8E-14 94.6 11.7 84 366-458 51-134 (177)
131 4fs7_A Uncharacterized protein 99.0 1.7E-08 5.8E-13 99.2 20.4 63 16-82 58-123 (394)
132 2o6r_A Variable lymphocyte rec 99.0 2.5E-09 8.5E-14 92.4 11.9 125 346-482 9-135 (177)
133 4fdw_A Leucine rich hypothetic 99.0 6.7E-08 2.3E-12 94.7 22.4 169 296-480 202-379 (401)
134 4fs7_A Uncharacterized protein 99.0 1.1E-07 3.9E-12 93.2 24.0 123 320-457 253-375 (394)
135 1dce_A Protein (RAB geranylger 99.0 3.9E-10 1.3E-14 115.8 6.4 82 6-91 442-523 (567)
136 4b8c_D Glucose-repressible alc 99.0 3.3E-10 1.1E-14 120.0 5.4 99 2-102 221-319 (727)
137 1ds9_A Outer arm dynein; leuci 98.9 1.4E-11 4.7E-16 108.9 -6.2 69 17-88 37-105 (198)
138 4fdw_A Leucine rich hypothetic 98.9 2.3E-07 7.7E-12 90.9 22.6 231 196-457 136-379 (401)
139 2r9u_A Variable lymphocyte rec 98.9 1.2E-09 4E-14 94.1 5.5 81 6-88 34-117 (174)
140 1ds9_A Outer arm dynein; leuci 98.9 1.4E-11 4.9E-16 108.8 -7.4 85 2-90 45-129 (198)
141 4b8c_D Glucose-repressible alc 98.9 1.4E-09 4.7E-14 115.3 6.0 82 5-88 173-259 (727)
142 3g39_A Variable lymphocyte rec 98.8 6.2E-09 2.1E-13 89.2 6.4 92 7-102 11-105 (170)
143 3g39_A Variable lymphocyte rec 98.8 1.9E-08 6.3E-13 86.2 9.3 101 347-458 12-112 (170)
144 2r9u_A Variable lymphocyte rec 98.8 2.4E-08 8.3E-13 85.8 9.5 102 347-459 15-116 (174)
145 3e4g_A ATP synthase subunit S, 98.7 1.3E-08 4.5E-13 86.1 4.9 90 368-463 62-154 (176)
146 2ifg_A High affinity nerve gro 98.6 5.3E-08 1.8E-12 93.9 6.9 76 11-89 14-93 (347)
147 4gt6_A Cell surface protein; l 98.5 8.4E-06 2.9E-10 79.8 21.3 105 339-457 260-366 (394)
148 4gt6_A Cell surface protein; l 98.4 4E-05 1.4E-09 75.0 21.5 283 165-481 58-367 (394)
149 3e4g_A ATP synthase subunit S, 98.4 2.4E-07 8.2E-12 78.3 4.3 84 321-407 62-151 (176)
150 2ifg_A High affinity nerve gro 98.4 1.1E-06 3.6E-11 84.7 9.4 102 324-437 12-116 (347)
151 3un9_A NLR family member X1; l 98.3 3.1E-08 1E-12 96.1 -3.7 58 5-63 72-137 (372)
152 2ra8_A Uncharacterized protein 98.2 4.1E-06 1.4E-10 80.5 8.9 12 295-306 137-148 (362)
153 3un9_A NLR family member X1; l 98.1 8.4E-08 2.9E-12 93.0 -3.8 159 295-463 70-253 (372)
154 4h09_A Hypothetical leucine ri 98.1 0.00044 1.5E-08 67.1 22.6 130 320-466 217-349 (379)
155 4h09_A Hypothetical leucine ri 98.0 0.00068 2.3E-08 65.8 21.2 138 295-449 215-357 (379)
156 2ra8_A Uncharacterized protein 97.9 3.8E-05 1.3E-09 73.8 9.6 35 422-458 278-317 (362)
157 3rw6_A Nuclear RNA export fact 97.9 6.7E-06 2.3E-10 74.9 3.4 78 3-82 168-257 (267)
158 1io0_A Tropomodulin; LRR prote 97.7 5.4E-06 1.8E-10 71.7 0.1 85 2-88 33-135 (185)
159 3rw6_A Nuclear RNA export fact 97.4 2E-05 6.9E-10 71.8 -0.9 76 10-88 148-232 (267)
160 1io0_A Tropomodulin; LRR prote 97.1 5.9E-05 2E-09 65.1 -0.8 84 3-88 63-163 (185)
161 3rfe_A Platelet glycoprotein I 96.3 0.0053 1.8E-07 49.1 5.2 53 8-63 11-66 (130)
162 3rfe_A Platelet glycoprotein I 96.1 0.0066 2.3E-07 48.5 5.1 54 398-460 12-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 90.2 0.075 2.6E-06 45.5 0.8 79 4-84 40-134 (197)
164 1pgv_A TMD-1, tropomodulin TMD 82.4 0.56 1.9E-05 40.1 2.1 58 5-63 70-137 (197)
165 2lz0_A Uncharacterized protein 45.9 23 0.00079 26.1 4.1 45 409-457 8-52 (100)
166 2lz0_A Uncharacterized protein 45.4 16 0.00056 26.9 3.2 46 381-432 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-36 Score=322.89 Aligned_cols=474 Identities=16% Similarity=0.088 Sum_probs=276.9
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
+++++|++|++++|.+...+..++.+++|++|++++|.....+|..++.+++|++|++++|.....+|.. .+++|++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 4677888888888887754334788888888888888544566777778888888888877732333322 66666666
Q ss_pred CceeeecC-CCccCcccc-ccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCC-----CCCC-
Q 010426 82 SNFIVGTD-TKSSGLKDL-KSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQ-----FDDS- 153 (511)
Q Consensus 82 ~~~~~~~~-~~~~~~~~l-~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~- 153 (511)
++..+.+. ..|..+... ..|+.+ .+..+.+.. ..+..+..+++|+.|++++|......+. ....
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L--~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGL--DLSGNHFYG------AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEE--ECCSSEEEE------CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ECcCCccCCccCHHHHhhcCcCCEE--ECcCCcCCC------ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 66655543 222222221 333322 111111111 1112234445555555554411000000 0000
Q ss_pred --cch--hhhhhhhcCCCCCC-CCceEEEecCCCc-cCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEec
Q 010426 154 --RNE--SREELVLGKLKPCT-SIKKLTIKGYGGK-KIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVK 226 (511)
Q Consensus 154 --~~~--~~~~~~~~~l~~~~-~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~ 226 (511)
... .........+..++ +|+.|+++++... .++.++....+++|++|++++|...+.+| .++.+++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 000 00000111122222 5666666655442 23333332235667777777776544555 56677777777777
Q ss_pred CCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCC--CCCCCCCEEEE
Q 010426 227 GLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPL--CKNSQLESLCI 304 (511)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l 304 (511)
+|.....++ ..+..+++|+.|++.++.....+. .....+++|++|++++| .+.+.+|. ..+++|+.|++
T Consensus 427 ~N~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p-----~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 427 FNYLSGTIP---SSLGSLSKLRDLKLWLNMLEGEIP-----QELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp SSEEESCCC---GGGGGCTTCCEEECCSSCCCSCCC-----GGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEEC
T ss_pred CCcccCccc---HHHhcCCCCCEEECCCCcccCcCC-----HHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEc
Confidence 765332333 233446777777777765322221 11346778888888885 44445553 36788888888
Q ss_pred EccCCcceeccc--CCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCC--------------------
Q 010426 305 RYCDSLTFIARR--KLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPE-------------------- 362 (511)
Q Consensus 305 ~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-------------------- 362 (511)
++|.....++.. .+ ++|++|++++|.....+|..+..+++|++|++++|.....+|.
T Consensus 498 ~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CSSCCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred cCCccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 886544344321 22 4888888888866667888888888888888888843222221
Q ss_pred ---------------------------------------------------CCCCCCCceEEEEecccccccchhhhhhc
Q 010426 363 ---------------------------------------------------EGFPTNLVELEIRRVDVKMYKAIIHWGLH 391 (511)
Q Consensus 363 ---------------------------------------------------~~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 391 (511)
...+++|+.|++ +.+.+++..+..++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL---s~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM---SYNMLSGYIPKEIG 653 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC---CSSCCBSCCCGGGG
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC---cCCcccccCCHHHh
Confidence 112467889999 67778877777899
Q ss_pred cCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCc-ccCccccCCCCCcCEEeEecCCCCcccCCCCCC
Q 010426 392 RLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLK-MLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLP 470 (511)
Q Consensus 392 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 470 (511)
.++.|+.|++++ +.. ...+|. .+ ..+++|++|++++|. ++ .+| ..+..+++|++|++++|+--..+|..+.+
T Consensus 654 ~l~~L~~L~Ls~-N~l-~g~ip~-~l--~~L~~L~~LdLs~N~-l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 654 SMPYLFILNLGH-NDI-SGSIPD-EV--GDLRGLNILDLSSNK-LDGRIP-QAMSALTMLTEIDLSNNNLSGPIPEMGQF 726 (768)
T ss_dssp GCTTCCEEECCS-SCC-CSCCCG-GG--GGCTTCCEEECCSSC-CEECCC-GGGGGCCCCSEEECCSSEEEEECCSSSSG
T ss_pred ccccCCEEeCcC-Ccc-CCCCCh-HH--hCCCCCCEEECCCCc-ccCcCC-hHHhCCCCCCEEECcCCcccccCCCchhh
Confidence 999999999999 443 346676 55 778999999999999 66 666 88899999999999996555567877766
Q ss_pred CcccEEEecCCcchH----HHHhcC-CCCCcceeeeeeEe
Q 010426 471 SSILWLNIWSCPKLE----KVCKWH-TKEGSKIANIPRVC 505 (511)
Q Consensus 471 ~~L~~L~l~~c~~l~----~~~~~~-~~~~~~~~~~~~~~ 505 (511)
.++....+.+++.|= ..|... +++|++|+|.|+++
T Consensus 727 ~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 727 ETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred ccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 666666666766542 257777 99999999998764
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-33 Score=293.20 Aligned_cols=290 Identities=18% Similarity=0.154 Sum_probs=206.4
Q ss_pred CCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCe
Q 010426 171 SIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLET 249 (511)
Q Consensus 171 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 249 (511)
+++.++++++....++..... .+++|++|++++|. +..+| .+..+++|++|++++|......+ ..+..+++|+.
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFH-CFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQ---ISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTT-TCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGG---GCGGGCTTCSE
T ss_pred ceeEEEeecCccCccCHHHhc-cccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCch---hhhhccCcCCE
Confidence 677888888877776654332 68899999999886 45666 78888999999998886433222 33445889999
Q ss_pred EEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcC----CCCCCCCCCCEEEEEccCCcceecccCCC--CCcC
Q 010426 250 LWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGI----LPLCKNSQLESLCIRYCDSLTFIARRKLP--SSLK 323 (511)
Q Consensus 250 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~ 323 (511)
|++.++.....+. ......+++|++|+++++ .+... .....+++|+.|++++|. +..+....+. ++|+
T Consensus 330 L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 330 LSIKGNTKRLELG----TGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLE 403 (606)
T ss_dssp EECCSCSSCCBCC----SSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCS
T ss_pred EECCCCCcccccc----hhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCC
Confidence 9998875332221 122457889999999885 44322 124478899999999864 4555443332 6899
Q ss_pred eEeeccCcccccccc-cccCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEecccccccch---hhhhhccCCccc
Q 010426 324 WLEIENCEKLESLPN-DMHELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAI---IHWGLHRLTSLR 397 (511)
Q Consensus 324 ~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~---~~~~~~~l~~L~ 397 (511)
+|++++|......+. .+..+++|++|++++| .++..+. ...+++|++|+++ .+.+.+. ....+..+++|+
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~---~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQ---GNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECT---TCBCGGGEECSSCGGGGCTTCC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECC---CCCCCccccccchhhccCCCcc
Confidence 999999955444443 4788999999999999 4554433 2567899999995 4455432 224678899999
Q ss_pred EEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcccE
Q 010426 398 RLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSILW 475 (511)
Q Consensus 398 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~ 475 (511)
.|++++ |. +..++...+ ..+++|++|++++|. ++.++...+..++.| .|++++| +++.++...+ .++|++
T Consensus 480 ~L~Ls~-n~--l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 480 ILVLSF-CD--LSSIDQHAF--TSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRT 551 (606)
T ss_dssp EEECTT-SC--CCEECTTTT--TTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSE
T ss_pred EEECCC-Cc--cCccChhhh--ccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCE
Confidence 999999 43 666653134 678999999999998 777766889999999 9999995 6666655433 478999
Q ss_pred EEecCCcc
Q 010426 476 LNIWSCPK 483 (511)
Q Consensus 476 L~l~~c~~ 483 (511)
|++++|+-
T Consensus 552 L~l~~N~~ 559 (606)
T 3t6q_A 552 INLRQNPL 559 (606)
T ss_dssp EECTTCCE
T ss_pred EeCCCCCc
Confidence 99999763
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.7e-33 Score=290.37 Aligned_cols=262 Identities=15% Similarity=0.084 Sum_probs=165.4
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhcccccccc
Q 010426 193 SFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAG 272 (511)
Q Consensus 193 ~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 272 (511)
.+++|+.|+++++. +..++.+..+++|+.|++++|.. ..++ .+ .+++|+.|++.++....... ...
T Consensus 283 ~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp----~~-~l~~L~~L~l~~n~~~~~~~-------~~~ 348 (606)
T 3vq2_A 283 CLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFP----TL-DLPFLKSLTLTMNKGSISFK-------KVA 348 (606)
T ss_dssp GGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCC----CC-CCSSCCEEEEESCSSCEECC-------CCC
T ss_pred cCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-cccc----cC-CCCccceeeccCCcCccchh-------hcc
Confidence 45677777777765 35556666677777777777664 3332 12 46677777777664333222 346
Q ss_pred CCCcCeeeeccCCCcCcC--CC--CCCCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCccccccc-ccccCCCC
Q 010426 273 FSSLRELSILNCSKFSGI--LP--LCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLP-NDMHELNY 345 (511)
Q Consensus 273 ~~~L~~L~l~~c~~l~~~--~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~-~~~~~~~~ 345 (511)
+++|++|++++| .+++. .+ ...+++|+.|++++|. ++.++. .+. ++|+.|++++|......+ ..+..+++
T Consensus 349 l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 349 LPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred CCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccchh-hccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 677777777774 33311 11 1256777777777753 444442 221 578888888885444444 46677888
Q ss_pred cCeEEecCCCCCcc-cCC-CCCCCCCceEEEEecccccccc-hhhhhhccCCcccEEEEecCCCCCccccCcccccccCC
Q 010426 346 LQHLCINRCPSIVR-FPE-EGFPTNLVELEIRRVDVKMYKA-IIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLP 422 (511)
Q Consensus 346 L~~L~l~~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 422 (511)
|++|++++|. ++. .+. ...+++|++|++ +.+.+++ ..+..+..+++|+.|++++ |. +...+...+ ..+
T Consensus 426 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~--l~~~~~~~~--~~l 496 (606)
T 3vq2_A 426 LLYLDISYTN-TKIDFDGIFLGLTSLNTLKM---AGNSFKDNTLSNVFANTTNLTFLDLSK-CQ--LEQISWGVF--DTL 496 (606)
T ss_dssp CCEEECTTSC-CEECCTTTTTTCTTCCEEEC---TTCEEGGGEECSCCTTCTTCCEEECTT-SC--CCEECTTTT--TTC
T ss_pred CCEEECcCCC-CCccchhhhcCCCCCCEEEC---CCCcCCCcchHHhhccCCCCCEEECCC-Cc--CCccChhhh--ccc
Confidence 8888888884 443 322 255678888888 4445554 3455677788888888888 33 555543133 567
Q ss_pred CccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCC--CCCCcccEEEecCCc
Q 010426 423 TSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEA--GLPSSILWLNIWSCP 482 (511)
Q Consensus 423 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 482 (511)
++|++|++++|. ++.+....+..+++|++|++++| +++.+|.. .++++|++|++++++
T Consensus 497 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 497 HRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred ccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 888888888887 66664477788888888888885 57777663 233468888887754
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.5e-34 Score=304.22 Aligned_cols=450 Identities=17% Similarity=0.124 Sum_probs=250.3
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccccc--cccCcCccceEEecCcccccccCCcc-cCcCCC
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPS--KLRNLINLRHLDIMGAYLIKEIPFGM-KELKNL 78 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~l~~~l-~~l~~L 78 (511)
.+++.|+.++++.+.+..+|+.|+.+++|++|+|++|.....+|. .++++++|++|++++|.....+|..+ +++++|
T Consensus 74 ~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred hccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 456666777777666666666677777777777777744445565 66777777777777776333444443 566777
Q ss_pred ccCCceeeecCCCc-cC---ccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCC---
Q 010426 79 QALSNFIVGTDTKS-SG---LKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFD--- 151 (511)
Q Consensus 79 ~~L~~~~~~~~~~~-~~---~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--- 151 (511)
++|+++.+.+.... .. +..+..|+.+ .+..+.+... .....+++|+.|++++|.+....+.+.
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L--~Ls~n~l~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~ 223 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHL--AISGNKISGD--------VDVSRCVNLEFLDVSSNNFSTGIPFLGDCS 223 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEE--ECCSSEEESC--------CBCTTCTTCCEEECCSSCCCSCCCBCTTCC
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEE--ECCCCccccc--------CCcccCCcCCEEECcCCcCCCCCcccccCC
Confidence 77766665543321 11 2223333322 1111111110 011334455555555441110000000
Q ss_pred CCc-----chhhhhhhhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCC-CCCccEEE
Q 010426 152 DSR-----NESREELVLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGL-LSSLKHLT 224 (511)
Q Consensus 152 ~~~-----~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~-l~~L~~L~ 224 (511)
... ...........+..+++|++|+++++......... .+++|++|++++|...+.+| .+.. +++|++|+
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 000 00001111223444555555555555543221111 35556666666655433444 3333 36666666
Q ss_pred ecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCC--CCC-CCCE
Q 010426 225 VKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLC--KNS-QLES 301 (511)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~-~L~~ 301 (511)
+++|.....++ ..+..+++|+.|++.++.....+. ......+++|++|++++| .+.+.+|.. .++ +|+.
T Consensus 301 Ls~n~l~~~~p---~~~~~l~~L~~L~L~~n~l~~~ip----~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 301 LSGNHFYGAVP---PFFGSCSLLESLALSSNNFSGELP----MDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLT 372 (768)
T ss_dssp CCSSEEEECCC---GGGGGCTTCCEEECCSSEEEEECC----HHHHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSE
T ss_pred CcCCcCCCccc---hHHhcCCCccEEECCCCcccCcCC----HHHHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcE
Confidence 66655332222 223346666666666654221111 011345677777777774 343344433 233 7777
Q ss_pred EEEEccCCcceecccC-C--CCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCc-ccCC-CCCCCCCceEEEEe
Q 010426 302 LCIRYCDSLTFIARRK-L--PSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIV-RFPE-EGFPTNLVELEIRR 376 (511)
Q Consensus 302 L~l~~~~~l~~~~~~~-~--~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~-~~~~~~L~~L~l~~ 376 (511)
|++++|.....++... . .++|++|++++|.....+|..+..+++|++|++++| .++ ..+. ...+++|+.|++
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L-- 449 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKL-- 449 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEEC--
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEEC--
Confidence 7777754332222211 1 247888888888666677888888889999999888 444 3332 256688889988
Q ss_pred cccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCc-ccCccccCCCCCcCEEeE
Q 010426 377 VDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLK-MLSSKGFQSLTSLEFLWI 455 (511)
Q Consensus 377 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~l~~L~~L~l 455 (511)
+.+.+.+..+..+..+++|++|++++ |.. ...+|. .+ ..+++|++|++++|. ++ .+| ..+..+++|++|++
T Consensus 450 -~~n~l~~~~p~~~~~l~~L~~L~L~~-N~l-~~~~p~-~l--~~l~~L~~L~L~~N~-l~~~~p-~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 450 -WLNMLEGEIPQELMYVKTLETLILDF-NDL-TGEIPS-GL--SNCTNLNWISLSNNR-LTGEIP-KWIGRLENLAILKL 521 (768)
T ss_dssp -CSSCCCSCCCGGGGGCTTCCEEECCS-SCC-CSCCCG-GG--GGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEEC
T ss_pred -CCCcccCcCCHHHcCCCCceEEEecC-Ccc-cCcCCH-HH--hcCCCCCEEEccCCc-cCCcCC-hHHhcCCCCCEEEC
Confidence 45556656666788888999999988 442 334454 44 678889999999988 55 556 77888899999999
Q ss_pred ecCCCCcccCCC-CCCCcccEEEecCCcc
Q 010426 456 DDCPNLTSFPEA-GLPSSILWLNIWSCPK 483 (511)
Q Consensus 456 ~~c~~l~~~~~~-~~~~~L~~L~l~~c~~ 483 (511)
++|.-...+|.. +..++|++|++++|+-
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 986444355541 2247889999988753
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-33 Score=294.21 Aligned_cols=426 Identities=17% Similarity=0.138 Sum_probs=239.8
Q ss_pred eeccEeecCCCccccCC-ccccccccccEEeccCccccccc-cccccCcCccceEEecCccccccc-CCcccCcCCCccC
Q 010426 5 KHLRYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEI-PFGMKELKNLQAL 81 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L 81 (511)
+++++|++++|.+..++ .+|..+++|++|++++| .+..+ |..|+++++|++|++++|. +..+ |..++.+++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEE
Confidence 46788888888888775 46888888888888888 45444 5567888888888888888 6666 5568888888888
Q ss_pred CceeeecCCCc-cCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhh
Q 010426 82 SNFIVGTDTKS-SGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREE 160 (511)
Q Consensus 82 ~~~~~~~~~~~-~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (511)
+++++.+...+ ..+..+.+|+.+ .+..+.+... ..+..+.++++|+.|++++|........
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L--~L~~n~l~~~-----~lp~~~~~l~~L~~L~Ls~n~l~~~~~~----------- 171 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKL--NVAHNFIHSC-----KLPAYFSNLTNLVHVDLSYNYIQTITVN----------- 171 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEE--ECCSSCCCCC-----CCCGGGGTCTTCCEEECCSSCCCEECTT-----------
T ss_pred EccCCccccccccccCCCCCCCEE--eCCCCcccce-----echHhHhhcCCCCEEEccCCcceecChh-----------
Confidence 88777765542 345555555544 2322322211 1123466778888888887722111100
Q ss_pred hhhcCCCCCCC-CceEEEecCCCccCCcccCCCCCCCccEEEEecCCCC-------------------------------
Q 010426 161 LVLGKLKPCTS-IKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENC------------------------------- 208 (511)
Q Consensus 161 ~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------------- 208 (511)
.+..+..++. +..++++++....++..... ..+|+.|++++|...
T Consensus 172 -~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 172 -DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp -TTHHHHHCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred -hhhhhhccccccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 0000111111 22344444444333332221 123444444443211
Q ss_pred ---------------------------CCCCCCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhh
Q 010426 209 ---------------------------TSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYW 261 (511)
Q Consensus 209 ---------------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 261 (511)
+..+.+..+++|+.|+++++.. ..++ .+..+++|+.|++.++.. ..+
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~----~l~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE----DVPKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC----CCCTTCCCSEEEEESCCC-SSC
T ss_pred ccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhh----hccccccCCEEEcccccC-ccc
Confidence 1112344556666666666552 2222 234466677777776643 222
Q ss_pred hhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceec---c--cCCCCCcCeEeeccCcccccc
Q 010426 262 DTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIA---R--RKLPSSLKWLEIENCEKLESL 336 (511)
Q Consensus 262 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~---~--~~~~~~L~~L~l~~~~~l~~l 336 (511)
+ .. .+++|++|++++|.... .++...+++|+.|++++| .++... . ..+ ++|++|++++| .++.+
T Consensus 323 ----p--~~-~l~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~-~~L~~L~L~~n-~l~~~ 391 (606)
T 3vq2_A 323 ----P--TL-DLPFLKSLTLTMNKGSI-SFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGT-NSLRHLDLSFN-GAIIM 391 (606)
T ss_dssp ----C--CC-CCSSCCEEEEESCSSCE-ECCCCCCTTCCEEECCSS-CEEEEEECCHHHHCC-SCCCEEECCSC-SEEEE
T ss_pred ----c--cC-CCCccceeeccCCcCcc-chhhccCCCCCEEECcCC-ccCCCcchhhhhccC-CcccEeECCCC-ccccc
Confidence 1 12 56677777777764443 445556677777777764 333321 1 122 46777777777 35556
Q ss_pred cccccCCCCcCeEEecCCCCCcccCC---CCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccc--
Q 010426 337 PNDMHELNYLQHLCINRCPSIVRFPE---EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAEC-- 411 (511)
Q Consensus 337 ~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-- 411 (511)
|..+..+++|++|++++| .+...+. ...+++|++|++ +.+.+....+..+.++++|++|++++ +. +..
T Consensus 392 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~-n~--l~~~~ 464 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDI---SYTNTKIDFDGIFLGLTSLNTLKMAG-NS--FKDNT 464 (606)
T ss_dssp CCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEEC---TTSCCEECCTTTTTTCTTCCEEECTT-CE--EGGGE
T ss_pred hhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEEC---cCCCCCccchhhhcCCCCCCEEECCC-Cc--CCCcc
Confidence 666667777777777777 3333322 245567777777 44445555555566777777777777 32 333
Q ss_pred cCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCccc-CC-CCCCCcccEEEecCCc
Q 010426 412 FPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSF-PE-AGLPSSILWLNIWSCP 482 (511)
Q Consensus 412 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~-~~-~~~~~~L~~L~l~~c~ 482 (511)
++. .+ ..+++|++|++++|. ++.++...+..+++|++|++++| +++.+ |. -+..++|++|++++|.
T Consensus 465 ~~~-~~--~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 465 LSN-VF--ANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp ECS-CC--TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred hHH-hh--ccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc
Confidence 333 23 456777777777776 66554456667777777777775 44443 22 1113567777777653
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-32 Score=284.68 Aligned_cols=431 Identities=18% Similarity=0.141 Sum_probs=289.4
Q ss_pred eeccEeecCCCccccC-CccccccccccEEeccCccccccccccccCcCccceEEecCccccccc-CCcccCcCCCccCC
Q 010426 5 KHLRYLNLSDTRIRNL-PKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEI-PFGMKELKNLQALS 82 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~ 82 (511)
+.+++|++++|.|+.+ |.+|+.+++|++|++++|......|..|+++++|++|++++|. +..+ |..++.+++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEee
Confidence 3578888888888877 4668888888888888884444446678888888888888887 5444 45688888888888
Q ss_pred ceeeecCCC-ccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhh
Q 010426 83 NFIVGTDTK-SSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREEL 161 (511)
Q Consensus 83 ~~~~~~~~~-~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (511)
++++.+... +..+..+.+|..+ .+..+.+..... ..+..+++|+.|++++|... ....
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L--~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~------------~~~~- 170 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESL--YLGSNHISSIKL------PKGFPTEKLKVLDFQNNAIH------------YLSK- 170 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEE--ECCSSCCCCCCC------CTTCCCTTCCEEECCSSCCC------------EECH-
T ss_pred ccccCcccCCcchhccCCcccEE--ECCCCcccccCc------ccccCCcccCEEEcccCccc------------ccCh-
Confidence 877776553 2445555555544 233233222110 11233667788888776111 0001
Q ss_pred hhcCCCCCCCCc--eEEEecCCCccCCcccCCC-----------------------------------------------
Q 010426 162 VLGKLKPCTSIK--KLTIKGYGGKKIPSWIADP----------------------------------------------- 192 (511)
Q Consensus 162 ~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~----------------------------------------------- 192 (511)
..+..+++|+ .|+++++.....+......
T Consensus 171 --~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 171 --EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp --HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred --hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 1122234444 4555555443332211100
Q ss_pred -CC--CCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccc
Q 010426 193 -SF--SKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEE 267 (511)
Q Consensus 193 -~~--~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 267 (511)
.+ .+|+.|++++|.. ..++ .++.+++|++|++++|. +..++ ..+..+++|++|++.++...... .
T Consensus 249 ~~l~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~lp---~~l~~l~~L~~L~l~~n~l~~~~-----~ 318 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYF-FNISSNTFHCFSGLQELDLTATH-LSELP---SGLVGLSTLKKLVLSANKFENLC-----Q 318 (606)
T ss_dssp GGGGGSEEEEEECTTCCC-SSCCTTTTTTCTTCSEEECTTSC-CSCCC---SSCCSCTTCCEEECTTCCCSBGG-----G
T ss_pred chhhcCceeEEEeecCcc-CccCHHHhccccCCCEEeccCCc-cCCCC---hhhcccccCCEEECccCCcCcCc-----h
Confidence 00 1678888888864 4444 58899999999999986 44554 34566899999999987532211 1
Q ss_pred cccccCCCcCeeeeccCCCcCcCCC---CCCCCCCCEEEEEccCCcceec--ccCCC--CCcCeEeeccCcccccccccc
Q 010426 268 NGVAGFSSLRELSILNCSKFSGILP---LCKNSQLESLCIRYCDSLTFIA--RRKLP--SSLKWLEIENCEKLESLPNDM 340 (511)
Q Consensus 268 ~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~--~~~~~--~~L~~L~l~~~~~l~~l~~~~ 340 (511)
.....+++|++|++++|.. ...++ ...+++|++|++++|. ++... ...+. ++|++|++++|......+..+
T Consensus 319 ~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTK-RLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GCGGGCTTCSEEECCSCSS-CCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred hhhhccCcCCEEECCCCCc-ccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 2246789999999999743 32343 3478999999999964 44443 22222 599999999996555567788
Q ss_pred cCCCCcCeEEecCCCCCccc-CC--CCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccc--cCcc
Q 010426 341 HELNYLQHLCINRCPSIVRF-PE--EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAEC--FPDE 415 (511)
Q Consensus 341 ~~~~~L~~L~l~~~~~l~~~-~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~ 415 (511)
..+++|++|++++| .++.. +. ...+++|++|++ +.+.++...+..+..+++|++|++++ +. +.. ++.
T Consensus 397 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~L~~-n~--l~~~~~~~- 468 (606)
T 3t6q_A 397 KECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNL---SHSLLDISSEQLFDGLPALQHLNLQG-NH--FPKGNIQK- 468 (606)
T ss_dssp TTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEEC---TTCCCBTTCTTTTTTCTTCCEEECTT-CB--CGGGEECS-
T ss_pred cCCccCCeEECCCC-cCCCcccchhhhCcccCCEEEC---CCCccCCcCHHHHhCCCCCCEEECCC-CC--CCcccccc-
Confidence 99999999999999 44443 22 356789999999 56677777777789999999999999 43 433 222
Q ss_pred cccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcccEEEecCCc
Q 010426 416 EMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSILWLNIWSCP 482 (511)
Q Consensus 416 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 482 (511)
......+++|++|++++|. ++.++...+..+++|++|++++| +++..+...+ .++| +|++++|.
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp SCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred chhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCc
Confidence 1122678999999999998 88876588999999999999996 6665543223 3678 89998864
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.2e-32 Score=287.84 Aligned_cols=102 Identities=25% Similarity=0.255 Sum_probs=77.4
Q ss_pred CCCceeccEeecCCCccccC-CccccccccccEEeccCccccccccc-cccCcCccceEEecCcccccccCC-cccCcCC
Q 010426 1 MSGWKHLRYLNLSDTRIRNL-PKPTCSLINLQVLLLRDCYYLLKLPS-KLRNLINLRHLDIMGAYLIKEIPF-GMKELKN 77 (511)
Q Consensus 1 ~~~l~~Lr~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~ 77 (511)
|+++++|++|++++|.+..+ |..|+.+++|++|++++| .+..+|. .|+++++|++|++++|. +..+++ .++.+++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTT
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCC
Confidence 45678899999999988876 566888999999999998 6777775 58889999999999988 777764 4888999
Q ss_pred CccCCceeeecCCC-ccCcccccccccc
Q 010426 78 LQALSNFIVGTDTK-SSGLKDLKSLAFV 104 (511)
Q Consensus 78 L~~L~~~~~~~~~~-~~~~~~l~~L~~l 104 (511)
|++|+++++.+... +..+..+.+|+.+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEE
Confidence 99998888766543 1334445555433
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.9e-32 Score=285.73 Aligned_cols=455 Identities=15% Similarity=0.135 Sum_probs=246.9
Q ss_pred eeccEeecCCCccccCCc-cccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCc-ccCcCCCccCC
Q 010426 5 KHLRYLNLSDTRIRNLPK-PTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALS 82 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~ 82 (511)
+++++|++++|.|..+|. .|+.+++|++|++++|......|..++++++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEE
Confidence 579999999999998874 59999999999999994444446778999999999999998 8888875 99999999999
Q ss_pred ceeeecCCCc-cCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCC---------CCC
Q 010426 83 NFIVGTDTKS-SGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQ---------FDD 152 (511)
Q Consensus 83 ~~~~~~~~~~-~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---------~~~ 152 (511)
++.+.+...+ ..+..+.+|..+ .+..+.+... ....+..+++|+.|++++|........ ...
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L--~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITL--DLSHNGLSST------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEE--ECCSSCCSCC------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCccCccChhHccccCCCCEE--ECCCCccccc------CchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 9888776543 345566666644 2322222211 111233445555555554411100000 000
Q ss_pred Cc-----chhhhhhhhcCCC------------------------CCCCCceEEEecCCCccC-CcccCCCCCCCccEEEE
Q 010426 153 SR-----NESREELVLGKLK------------------------PCTSIKKLTIKGYGGKKI-PSWIADPSFSKMEVLGL 202 (511)
Q Consensus 153 ~~-----~~~~~~~~~~~l~------------------------~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l 202 (511)
.+ ........+..+. ..++|+.|+++++..... +.++.....++|++|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 00 0000000000000 113455555555554332 22222101134677777
Q ss_pred ecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhh----hhccccccccCCCcC
Q 010426 203 ENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWD----TKFEENGVAGFSSLR 277 (511)
Q Consensus 203 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~~~~~~~L~ 277 (511)
++|......+ .++.+++|+.|++++|......+ ..+..+++|+.|++.++.....+. +.+....+..+++|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS---HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT---TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccCh---hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 7665333333 45666777777776665333222 233445666666665421100000 000011123455555
Q ss_pred eeeeccCCCcCcCCC--CCCCCCCCEEEEEccC---------------------------CcceecccCCC--CCcCeEe
Q 010426 278 ELSILNCSKFSGILP--LCKNSQLESLCIRYCD---------------------------SLTFIARRKLP--SSLKWLE 326 (511)
Q Consensus 278 ~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~---------------------------~l~~~~~~~~~--~~L~~L~ 326 (511)
+|+++++ .+.+..+ ...+++|++|++++|. .++.+.+..+. ++|+.|+
T Consensus 333 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 333 HLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp EEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 5555553 2332211 1234455555554432 22222222221 4566666
Q ss_pred eccCccccccc-ccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEec
Q 010426 327 IENCEKLESLP-NDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 327 l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
+++|.....++ ..+..+++|++|++++| .+..+... ..+++|+.|++.+|....+ +..+..+..+++|+.|++++
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNV-DSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBCT-TCSSCTTTTCTTCCEEECCS
T ss_pred CCCCcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccchhcccccccc-ccCCcccccCCCCCEEECCC
Confidence 66664333333 34556666666666666 33333222 3456666666642222222 22334567788888888888
Q ss_pred CCCCCccccCcccccccCCCccceEeecCCcCCcccCc--------cccCCCCCcCEEeEecCCCCcccCCCCC--CCcc
Q 010426 404 CDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSS--------KGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSI 473 (511)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--------~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L 473 (511)
+ . +..++...+ ..+++|++|++++|. ++.++. ..+..+++|++|++++ ++++.+|...+ .++|
T Consensus 490 -N-~-l~~i~~~~~--~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 490 -N-N-IANINDDML--EGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp -S-C-CCCCCTTTT--TTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred -C-C-CCcCChhhh--ccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCc
Confidence 3 3 666665223 567888888888887 776531 2267788888888888 47777776433 4788
Q ss_pred cEEEecCC
Q 010426 474 LWLNIWSC 481 (511)
Q Consensus 474 ~~L~l~~c 481 (511)
++|+++++
T Consensus 563 ~~L~Ls~N 570 (680)
T 1ziw_A 563 KIIDLGLN 570 (680)
T ss_dssp CEEECCSS
T ss_pred ceeECCCC
Confidence 88888764
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=282.73 Aligned_cols=423 Identities=20% Similarity=0.216 Sum_probs=282.3
Q ss_pred eeccEeecCCCccccCC-ccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccC-CcccCcCCCccC
Q 010426 5 KHLRYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIP-FGMKELKNLQAL 81 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L 81 (511)
+++++|++++|.|+.++ .+|..+++|++|++++| .+..++ ..++++++|++|++++|. +..++ ..++.+++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccc
Confidence 36788888888888774 56888888888888888 555554 557888888888888888 66666 448888888888
Q ss_pred CceeeecCCCcc-CccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhh
Q 010426 82 SNFIVGTDTKSS-GLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREE 160 (511)
Q Consensus 82 ~~~~~~~~~~~~-~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (511)
+++++.+...+. .+..+.+|+.+ .+..+.+.... .+..+.++++|+.|++++|......
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L--~L~~n~l~~~~-----lp~~~~~l~~L~~L~l~~n~l~~~~------------- 165 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKEL--NVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQSIY------------- 165 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEE--ECCSSCCCCCC-----CCGGGGGCTTCCEEECTTSCCCEEC-------------
T ss_pred cccccccccCCCccccccccccEE--ecCCCccceec-----ChhhhcccCCCCEEeCcCCccceec-------------
Confidence 887776655422 34555555543 22222222211 1234666778888888776211100
Q ss_pred hhhcCCCCCCCC----ceEEEecCCCccCCcccCCCCCCCccEEEEecC-------------------------------
Q 010426 161 LVLGKLKPCTSI----KKLTIKGYGGKKIPSWIADPSFSKMEVLGLENC------------------------------- 205 (511)
Q Consensus 161 ~~~~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------------------------- 205 (511)
...+..+.+| +.++++++....++..... ..+|+.|++++|
T Consensus 166 --~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 166 --CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp --GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred --HHHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 0111111222 4455555444333322221 123444444443
Q ss_pred ---------------------------CCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCC
Q 010426 206 ---------------------------ENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPE 257 (511)
Q Consensus 206 ---------------------------~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 257 (511)
......+ .+..+++|+.|++++|. +..++ ..+..+ +|+.|++.++..
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~---~~~~~~-~L~~L~l~~n~~ 316 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVK---DFSYNF-GWQHLELVNCKF 316 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCC---BCCSCC-CCSEEEEESCBC
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhh---hhhccC-CccEEeeccCcc
Confidence 1112222 56677888889888875 33333 223335 888888887753
Q ss_pred chhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceec-----ccCCCCCcCeEeeccCcc
Q 010426 258 WEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIA-----RRKLPSSLKWLEIENCEK 332 (511)
Q Consensus 258 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~ 332 (511)
. .+. ...+++|++|++.++. ....++...+++|+.|++++|. ++... ...+ ++|++|++++| .
T Consensus 317 ~-~l~-------~~~l~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~-~~L~~L~l~~n-~ 384 (570)
T 2z63_A 317 G-QFP-------TLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGT-TSLKYLDLSFN-G 384 (570)
T ss_dssp S-SCC-------BCBCSSCCEEEEESCB-SCCBCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTC-SCCCEEECCSC-S
T ss_pred c-ccC-------cccccccCEEeCcCCc-cccccccccCCCCCEEeCcCCc-cCcccccccccccc-CccCEEECCCC-c
Confidence 2 221 2468899999999864 4436666789999999999964 44332 1123 59999999999 5
Q ss_pred cccccccccCCCCcCeEEecCCCCCcccCC---CCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCc
Q 010426 333 LESLPNDMHELNYLQHLCINRCPSIVRFPE---EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEA 409 (511)
Q Consensus 333 l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 409 (511)
+..++..+..+++|++|++++| .+...+. ...+++|++|++ +.+.+....+..+.++++|+.|++++ |. +
T Consensus 385 l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~-n~--l 457 (570)
T 2z63_A 385 VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAFNGIFNGLSSLEVLKMAG-NS--F 457 (570)
T ss_dssp EEEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEEC---TTSCCEECCTTTTTTCTTCCEEECTT-CE--E
T ss_pred cccccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeC---cCCcccccchhhhhcCCcCcEEECcC-Cc--C
Confidence 5566666899999999999999 4554432 356789999999 55567766667789999999999999 43 4
Q ss_pred c--ccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcccEEEecCCc
Q 010426 410 E--CFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSILWLNIWSCP 482 (511)
Q Consensus 410 ~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 482 (511)
. .+|. .+ ..+++|++|++++|. ++.+....+..+++|++|++++| +++.++...+ .++|++|++++++
T Consensus 458 ~~~~~p~-~~--~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 458 QENFLPD-IF--TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp GGGEECS-CC--TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccchh-hh--hcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 3 4664 44 678999999999998 88875588999999999999996 7777765433 4799999999854
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=2.7e-30 Score=280.17 Aligned_cols=285 Identities=14% Similarity=0.121 Sum_probs=174.0
Q ss_pred CCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCC
Q 010426 170 TSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLE 248 (511)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 248 (511)
++|+.|+++++....++.... ..+++|+.|++++|......+ .+..+++|++|++++|......+ ..+..+++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS---SNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS---CSCSSCTTCC
T ss_pred CCccEEECCCCcccccChhhh-hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH---HHhcCCCCCC
Confidence 456666666665544432222 146667777776665433333 55666667777776665322111 2344466677
Q ss_pred eEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeec
Q 010426 249 TLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIE 328 (511)
Q Consensus 249 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 328 (511)
.|++.++.. ..+ ....+..+++|+.|+++++ .++ .++. +++|+.|++++| .++.++. ...+++.++++
T Consensus 342 ~L~L~~N~i-~~~----~~~~~~~l~~L~~L~Ls~N-~l~-~i~~--~~~L~~L~l~~N-~l~~l~~--~~~~l~~L~ls 409 (844)
T 3j0a_A 342 YIDLQKNHI-AII----QDQTFKFLEKLQTLDLRDN-ALT-TIHF--IPSIPDIFLSGN-KLVTLPK--INLTANLIHLS 409 (844)
T ss_dssp EEECCSCCC-CCC----CSSCSCSCCCCCEEEEETC-CSC-CCSS--CCSCSEEEEESC-CCCCCCC--CCTTCCEEECC
T ss_pred EEECCCCCC-Ccc----ChhhhcCCCCCCEEECCCC-CCC-cccC--CCCcchhccCCC-Ccccccc--cccccceeecc
Confidence 777666531 111 1112345667777777664 333 2222 566777777764 3444432 12467777777
Q ss_pred cCccccccc--ccccCCCCcCeEEecCCCCCcccCCC---CCCCCCceEEEEeccccccc--chhhhhhccCCcccEEEE
Q 010426 329 NCEKLESLP--NDMHELNYLQHLCINRCPSIVRFPEE---GFPTNLVELEIRRVDVKMYK--AIIHWGLHRLTSLRRLWI 401 (511)
Q Consensus 329 ~~~~l~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~l~--~~~~~~~~~l~~L~~L~l 401 (511)
+| .++.++ ..+..+++|++|++++| .++..+.. ..+++|+.|++++|...... ...+..+.++++|+.|++
T Consensus 410 ~N-~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 410 EN-RLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp SC-CCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cC-ccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 77 444433 23458899999999999 45544322 34688999999633332221 223345778899999999
Q ss_pred ecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCCCCcccEEEecCC
Q 010426 402 EGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLPSSILWLNIWSC 481 (511)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c 481 (511)
++ + . ++.++...+ ..+++|++|++++|. ++.++...+. ++|+.|++++ ++++.++...+ ++|+++++.++
T Consensus 488 s~-N-~-l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~l~~~~~~--~~L~~L~Ls~-N~l~~~~~~~~-~~L~~l~l~~N 557 (844)
T 3j0a_A 488 NH-N-Y-LNSLPPGVF--SHLTALRGLSLNSNR-LTVLSHNDLP--ANLEILDISR-NQLLAPNPDVF-VSLSVLDITHN 557 (844)
T ss_dssp CH-H-H-HTTCCTTSS--SSCCSCSEEEEESCC-CSSCCCCCCC--SCCCEEEEEE-ECCCCCCSCCC-SSCCEEEEEEE
T ss_pred CC-C-c-ccccChhHc--cchhhhheeECCCCC-CCccChhhhh--ccccEEECCC-CcCCCCChhHh-CCcCEEEecCC
Confidence 99 3 4 777775233 678999999999987 8888755555 8899999999 56666655444 68999999874
Q ss_pred c
Q 010426 482 P 482 (511)
Q Consensus 482 ~ 482 (511)
|
T Consensus 558 p 558 (844)
T 3j0a_A 558 K 558 (844)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=6.7e-32 Score=283.39 Aligned_cols=389 Identities=15% Similarity=0.169 Sum_probs=222.3
Q ss_pred eeccEeecCCCccc-cCCccccccccccEEeccCccc-------------------------------------------
Q 010426 5 KHLRYLNLSDTRIR-NLPKPTCSLINLQVLLLRDCYY------------------------------------------- 40 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~n~~------------------------------------------- 40 (511)
.+++.|+|+++.+. .+|.+++.+++|++|+|++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47889999999997 7899999999999999999832
Q ss_pred ----------------------------------cccccccccCcCccceEEecCcccccc------------------c
Q 010426 41 ----------------------------------LLKLPSKLRNLINLRHLDIMGAYLIKE------------------I 68 (511)
Q Consensus 41 ----------------------------------~~~l~~~~~~l~~L~~L~l~~~~~l~~------------------l 68 (511)
+..+|+.++++++|++|++++|. +.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence 11245555666666666666666 444 5
Q ss_pred CCccc--CcCCCccCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeeccccc
Q 010426 69 PFGMK--ELKNLQALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQW 146 (511)
Q Consensus 69 ~~~l~--~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 146 (511)
|..++ ++++|++|+++++..... .+..+.++++|+.|++++|.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~-------------------------------~p~~l~~l~~L~~L~Ls~n~---- 284 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTK-------------------------------LPTFLKALPEMQLINVACNR---- 284 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSS-------------------------------CCTTTTTCSSCCEEECTTCT----
T ss_pred chhhhhcccCCCCEEEecCCcCCcc-------------------------------ChHHHhcCCCCCEEECcCCC----
Confidence 55555 666666665554432211 11234555677777777661
Q ss_pred CCCCCCCc-chhhhhhhhcCCCCCCCCceEEEecCCCccCCc--ccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEE
Q 010426 147 GSQFDDSR-NESREELVLGKLKPCTSIKKLTIKGYGGKKIPS--WIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHL 223 (511)
Q Consensus 147 ~~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 223 (511)
.+. . ........+..+..+++|++|+++++....+|. .+. .+++|+.|++++|...+.+|.++.+++|++|
T Consensus 285 --~l~--~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L 358 (636)
T 4eco_A 285 --GIS--GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASL 358 (636)
T ss_dssp --TSC--HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEE
T ss_pred --CCc--cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEE
Confidence 000 0 000111111123344778888888887777776 555 5778888888887754466677777888888
Q ss_pred EecCCccceEeccCCCCCCCCCC-CCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCC--------
Q 010426 224 TVKGLRKLKSMGYGEHCSNPFQS-LETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLC-------- 294 (511)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------- 294 (511)
++++|. +..++ ..+..+++ |+.|++.++..- .+...+ ....+++|+.|++++| .+.+..|..
T Consensus 359 ~L~~N~-l~~lp---~~l~~l~~~L~~L~Ls~N~l~-~lp~~~---~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 359 NLAYNQ-ITEIP---ANFCGFTEQVENLSFAHNKLK-YIPNIF---DAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp ECCSSE-EEECC---TTSEEECTTCCEEECCSSCCS-SCCSCC---CTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSC
T ss_pred ECCCCc-ccccc---HhhhhhcccCcEEEccCCcCc-ccchhh---hhcccCccCEEECcCC-cCCCcchhhhccccccc
Confidence 888775 33443 22344666 777777765421 111000 0112346777777774 333232211
Q ss_pred -CCCCCCEEEEEccCCcceecccCC--CCCcCeEeeccCcccccccccccC--------CCCcCeEEecCCCCCcccCCC
Q 010426 295 -KNSQLESLCIRYCDSLTFIARRKL--PSSLKWLEIENCEKLESLPNDMHE--------LNYLQHLCINRCPSIVRFPEE 363 (511)
Q Consensus 295 -~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~--------~~~L~~L~l~~~~~l~~~~~~ 363 (511)
.+++|+.|++++| .++.++...+ .++|++|++++| .++.+|..... +++|++|++++| .++.++..
T Consensus 430 ~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 506 (636)
T 4eco_A 430 FKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD 506 (636)
T ss_dssp CCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGG
T ss_pred ccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChh
Confidence 3456677777664 3444443221 136777777766 34455543321 226777777776 45555433
Q ss_pred -C--CCCCCceEEEEecccccccchhhhhhccCCcccEEEEecC-----CCCCccccCcccccccCCCccceEeecCCcC
Q 010426 364 -G--FPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGC-----DDDEAECFPDEEMGMMLPTSLSYLNIIGFRN 435 (511)
Q Consensus 364 -~--~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~-----~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 435 (511)
. .+++|+.|++ +.+.++.+ +..+..+++|+.|++++| +.. ...+|. .+ ..+++|++|++++|.
T Consensus 507 ~~~~~l~~L~~L~L---s~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l-~~~~p~-~l--~~l~~L~~L~Ls~N~- 577 (636)
T 4eco_A 507 FRATTLPYLVGIDL---SYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRT-LREWPE-GI--TLCPSLTQLQIGSND- 577 (636)
T ss_dssp GSTTTCTTCCEEEC---CSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBC-CCCCCT-TG--GGCSSCCEEECCSSC-
T ss_pred hhhccCCCcCEEEC---CCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcc-cccChH-HH--hcCCCCCEEECCCCc-
Confidence 2 4566777777 33444442 334556677777777541 111 233443 33 456667777777766
Q ss_pred CcccCccccCCCCCcCEEeEecCC
Q 010426 436 LKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 436 l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
++.+| ..+. ++|+.|+|++|+
T Consensus 578 l~~ip-~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 578 IRKVN-EKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCBCC-SCCC--TTCCEEECCSCT
T ss_pred CCccC-HhHh--CcCCEEECcCCC
Confidence 56666 3222 667777777643
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=281.00 Aligned_cols=445 Identities=19% Similarity=0.136 Sum_probs=268.0
Q ss_pred ceeccEeecCCCccccC-CccccccccccEEeccCccccccc-cccccCcCccceEEecCccccccc-CCcccCcCCCcc
Q 010426 4 WKHLRYLNLSDTRIRNL-PKPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEI-PFGMKELKNLQA 80 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~ 80 (511)
.++|++|+|++|.|+.+ |.+|..+++|++|+|++|.....+ |..++++++|++|++++|. +..+ |..++.+++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCE
Confidence 35788888888888866 567888888888888888666666 5668888888888888888 5555 566888888888
Q ss_pred CCceeeecCCC-cc--CccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCC--------
Q 010426 81 LSNFIVGTDTK-SS--GLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQ-------- 149 (511)
Q Consensus 81 L~~~~~~~~~~-~~--~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-------- 149 (511)
|+++.+.+... +. .+..+.+|+.| +++.+.+.... ....+..+++|+.|++++|.+......
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L--~Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRL--DLSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEE--EEESCCCCCCC-----CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred eeCcCCCCCcccccCccccccCCCCEE--ECCCCcccccc-----cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 88888776542 12 25566666655 44444443321 112366778888888887732211100
Q ss_pred -CCCCcch--hhhhhhhcCCCCCC------CCceEEEecCCCc-cCCcccC-----------------------------
Q 010426 150 -FDDSRNE--SREELVLGKLKPCT------SIKKLTIKGYGGK-KIPSWIA----------------------------- 190 (511)
Q Consensus 150 -~~~~~~~--~~~~~~~~~l~~~~------~L~~L~l~~~~~~-~~~~~~~----------------------------- 190 (511)
....... .........+..+. .|+.|+++++... ..+..+.
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 0000000 00000001111111 3777777766421 1111100
Q ss_pred -------CCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhh
Q 010426 191 -------DPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWD 262 (511)
Q Consensus 191 -------~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 262 (511)
....++|+.|++++|......+ .+..+++|+.|++++|......+ ..+..+++|+.|++.++..-. .
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~N~l~~-~- 329 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD---EAFYGLDNLQVLNLSYNLLGE-L- 329 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT---TTTTTCSSCCEEEEESCCCSC-C-
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh---HHhcCCCCCCEEECCCCCCCc-c-
Confidence 0012566777776665433333 55666777777777665332222 234446677777776653211 1
Q ss_pred hhccccccccCCCcCeeeeccCCCcCcCCC--CCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccc
Q 010426 263 TKFEENGVAGFSSLRELSILNCSKFSGILP--LCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDM 340 (511)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 340 (511)
....+..+++|+.|+++++ .+....+ ...+++|+.|++++| .++.++. + ++|+.+++++| .++.+|..
T Consensus 330 ---~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~--~-~~L~~L~l~~N-~l~~l~~~- 399 (844)
T 3j0a_A 330 ---YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF--I-PSIPDIFLSGN-KLVTLPKI- 399 (844)
T ss_dssp ---CSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS--C-CSCSEEEEESC-CCCCCCCC-
T ss_pred ---CHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCcccC--C-CCcchhccCCC-Cccccccc-
Confidence 1112345667777777764 4442221 234667777777774 3433331 2 36777777777 44455433
Q ss_pred cCCCCcCeEEecCCCCCcccCCC---CCCCCCceEEEEecccccccchhh-hhhccCCcccEEEEecCCCCCccccCccc
Q 010426 341 HELNYLQHLCINRCPSIVRFPEE---GFPTNLVELEIRRVDVKMYKAIIH-WGLHRLTSLRRLWIEGCDDDEAECFPDEE 416 (511)
Q Consensus 341 ~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 416 (511)
..+++.|++++| .++.++.. ..+++|+.|+++ .+.++.... ..+..+++|+.|++++ +. +...+...
T Consensus 400 --~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls---~N~l~~~~~~~~~~~~~~L~~L~Ls~-N~--l~~~~~~~ 470 (844)
T 3j0a_A 400 --NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILN---QNRFSSCSGDQTPSENPSLEQLFLGE-NM--LQLAWETE 470 (844)
T ss_dssp --CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEE---SCCCCCCCSSSSSCSCTTCCBCEEES-CC--CSSSCCSC
T ss_pred --ccccceeecccC-ccccCchhhhhhcCCccceeeCC---CCcccccccccccccCCccccccCCC-Cc--cccccccc
Confidence 456777777777 45554432 356888999995 334443322 2345678899999998 32 44322100
Q ss_pred ---ccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCCCCcccEEEecCCc
Q 010426 417 ---MGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLPSSILWLNIWSCP 482 (511)
Q Consensus 417 ---~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 482 (511)
.....+++|++|++++|. ++.++...+..+++|++|+|++ ++++.+|...++++|++|+++++.
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHH-HTTCCTTSSSSCCSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEEC
T ss_pred cchhhhcCcccccEEECCCCc-ccccChhHccchhhhheeECCC-CCCCccChhhhhccccEEECCCCc
Confidence 111567899999999998 8888878899999999999999 588888888888999999999853
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.3e-31 Score=274.65 Aligned_cols=428 Identities=19% Similarity=0.203 Sum_probs=278.7
Q ss_pred eeccEeecCCCccccC-CccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCCc-ccCcCCCccC
Q 010426 5 KHLRYLNLSDTRIRNL-PKPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQAL 81 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L 81 (511)
++|++|++++|.|..+ |.+|+.+++|++|++++| .+..++ ..++.+++|++|++++|. +..++.. ++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence 4789999999998876 567889999999999998 555544 678899999999999998 7777765 8899999999
Q ss_pred CceeeecCCC--ccCccccccccccCceEEEcc-ccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhh
Q 010426 82 SNFIVGTDTK--SSGLKDLKSLAFVGGELSISG-LENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESR 158 (511)
Q Consensus 82 ~~~~~~~~~~--~~~~~~l~~L~~l~~~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 158 (511)
+++++.+... +..+..+.+|..+ .+..+. .... ....+..+++|+.|++++|...
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L--~L~~n~~~~~~------~~~~~~~l~~L~~L~L~~n~l~-------------- 161 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTL--RIGNVETFSEI------RRIDFAGLTSLNELEIKALSLR-------------- 161 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEE--EEEESSSCCEE------CTTTTTTCCEEEEEEEEETTCC--------------
T ss_pred ECCCCcccccchhhhhhccCCccEE--ECCCCcccccc------CHhhhhcccccCeeeccCCccc--------------
Confidence 9888877642 2345556666644 333332 1111 1124667788888888887211
Q ss_pred hhhhhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCC----CCCCCCCCCccEEEecCCccce--
Q 010426 159 EELVLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTS----LPSFGLLSSLKHLTVKGLRKLK-- 232 (511)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~-- 232 (511)
......+..+++|+.|+++.+....++.++.. .+++|+.|++++|...+. .+....+++|+.|+++++....
T Consensus 162 -~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 162 -NYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp -EECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred -ccChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 11223455566777777777666555544322 366777777777764331 1122345566666665543110
Q ss_pred -------------------------Eec----cCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeecc
Q 010426 233 -------------------------SMG----YGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILN 283 (511)
Q Consensus 233 -------------------------~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 283 (511)
.+. ........+++++.+++.++..-......-.......+++|+.|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 000 000122345566666665543111000000000012346788888888
Q ss_pred CCCcCcCCCCC---CCCCCCEEEEEccCCcceec-----ccCCCCCcCeEeeccCccccccc---ccccCCCCcCeEEec
Q 010426 284 CSKFSGILPLC---KNSQLESLCIRYCDSLTFIA-----RRKLPSSLKWLEIENCEKLESLP---NDMHELNYLQHLCIN 352 (511)
Q Consensus 284 c~~l~~~~~~~---~~~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~ 352 (511)
+ .+. .+|.. .+++|+.|++++|.....++ ...+ ++|++|++++| .++.++ ..+..+++|++|+++
T Consensus 320 n-~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 320 S-KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW-PSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp S-CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS-TTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECT
T ss_pred C-ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc-ccCcEEEccCC-cccccccchhhhhcCCCCCEEECC
Confidence 5 455 55543 58899999999975443332 1223 48999999999 555554 357889999999999
Q ss_pred CCCCCcccCCC-CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeec
Q 010426 353 RCPSIVRFPEE-GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNII 431 (511)
Q Consensus 353 ~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 431 (511)
+| .++.++.. ..+++|++|+++ .+.++.++.. -.++|++|++++ | . ++.++ ..+++|++|+++
T Consensus 396 ~N-~l~~lp~~~~~~~~L~~L~Ls---~N~l~~l~~~---~~~~L~~L~Ls~-N-~-l~~~~------~~l~~L~~L~Ls 459 (549)
T 2z81_A 396 RN-TFHPMPDSCQWPEKMRFLNLS---STGIRVVKTC---IPQTLEVLDVSN-N-N-LDSFS------LFLPRLQELYIS 459 (549)
T ss_dssp TC-CCCCCCSCCCCCTTCCEEECT---TSCCSCCCTT---SCTTCSEEECCS-S-C-CSCCC------CCCTTCCEEECC
T ss_pred CC-CCccCChhhcccccccEEECC---CCCcccccch---hcCCceEEECCC-C-C-hhhhc------ccCChhcEEECC
Confidence 99 67777654 567899999995 4445544321 136899999999 3 3 66654 367899999999
Q ss_pred CCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcccEEEecCCc
Q 010426 432 GFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSILWLNIWSCP 482 (511)
Q Consensus 432 ~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 482 (511)
+|. ++.+|. ...+++|++|++++| +++.++...+ .++|++|++++|+
T Consensus 460 ~N~-l~~ip~--~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 460 RNK-LKTLPD--ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SSC-CSSCCC--GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCc-cCcCCC--cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 998 999983 467999999999995 7777766433 5799999998866
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.9e-31 Score=282.48 Aligned_cols=415 Identities=14% Similarity=0.141 Sum_probs=270.7
Q ss_pred eeccEeecCCCccc-cCCccccccccccEEec-cCcccccc---------------------------------------
Q 010426 5 KHLRYLNLSDTRIR-NLPKPTCSLINLQVLLL-RDCYYLLK--------------------------------------- 43 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~-~l~~~~~~l~~L~~L~L-~~n~~~~~--------------------------------------- 43 (511)
.+++.|+|+++.+. .+|++++.+++|++|+| ++|.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46889999999997 78999999999999999 66622111
Q ss_pred -------------------------------------ccccccCcCccceEEecCcccccc------------------c
Q 010426 44 -------------------------------------LPSKLRNLINLRHLDIMGAYLIKE------------------I 68 (511)
Q Consensus 44 -------------------------------------l~~~~~~l~~L~~L~l~~~~~l~~------------------l 68 (511)
+|..++++++|++|++++|. +.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccC
Confidence 45555555666666666555 433 5
Q ss_pred CCccc--CcCCCccCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeeccccc
Q 010426 69 PFGMK--ELKNLQALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQW 146 (511)
Q Consensus 69 ~~~l~--~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 146 (511)
|..++ ++++|++|+++.+..... .+..+..+++|+.|++++|.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~-------------------------------iP~~l~~L~~L~~L~Ls~N~---- 526 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQ-------------------------------LPDFLYDLPELQSLNIACNR---- 526 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCS-------------------------------CCGGGGGCSSCCEEECTTCT----
T ss_pred ChhhhhccCCCCCEEECcCCCCCcc-------------------------------ChHHHhCCCCCCEEECcCCC----
Confidence 55554 555555555444432111 11335566788888887771
Q ss_pred CCCCCCCcchhhhhhhhc-CCCCCCCCceEEEecCCCccCCc--ccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEE
Q 010426 147 GSQFDDSRNESREELVLG-KLKPCTSIKKLTIKGYGGKKIPS--WIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHL 223 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 223 (511)
.+.. .........+. .+..+++|+.|++++|.+..+|. .+. .+++|+.|++++|.. ..+|.++.+++|+.|
T Consensus 527 --~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l-~~lp~~~~L~~L~~L 600 (876)
T 4ecn_A 527 --GISA-AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKV-RHLEAFGTNVKLTDL 600 (876)
T ss_dssp --TSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCC-CBCCCCCTTSEESEE
T ss_pred --Cccc-ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCc-ccchhhcCCCcceEE
Confidence 0000 00001111222 55566789999999888888887 565 588899999998874 477788888999999
Q ss_pred EecCCccceEeccCCCCCCCCCC-CCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCC-------CC
Q 010426 224 TVKGLRKLKSMGYGEHCSNPFQS-LETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPL-------CK 295 (511)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~~ 295 (511)
++++|... .++ ..+..+++ |+.|++.++.. ..+...+. ....++|+.|++++| .+.+.+|. ..
T Consensus 601 ~Ls~N~l~-~lp---~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~---~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 601 KLDYNQIE-EIP---EDFCAFTDQVEGLGFSHNKL-KYIPNIFN---AKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYK 671 (876)
T ss_dssp ECCSSCCS-CCC---TTSCEECTTCCEEECCSSCC-CSCCSCCC---TTCSSCEEEEECCSS-CTTTTSSSCSSCTTTCC
T ss_pred ECcCCccc-cch---HHHhhccccCCEEECcCCCC-CcCchhhh---ccccCCCCEEECcCC-cCCCccccchhhhcccc
Confidence 99888733 444 33455777 89999888752 22210000 122345999999885 44333321 14
Q ss_pred CCCCCEEEEEccCCcceecccCC--CCCcCeEeeccCcccccccccccC--------CCCcCeEEecCCCCCcccCCC-C
Q 010426 296 NSQLESLCIRYCDSLTFIARRKL--PSSLKWLEIENCEKLESLPNDMHE--------LNYLQHLCINRCPSIVRFPEE-G 364 (511)
Q Consensus 296 ~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~--------~~~L~~L~l~~~~~l~~~~~~-~ 364 (511)
.++|+.|++++| .++.++...+ .++|+.|++++| .++.+|..+.. +++|++|++++| .++.++.. .
T Consensus 672 ~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~ 748 (876)
T 4ecn_A 672 GINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR 748 (876)
T ss_dssp CCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS
T ss_pred CCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhh
Confidence 568999999985 4555654322 258999999999 56677765543 338999999999 67776654 3
Q ss_pred --CCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCC----CCCccccCcccccccCCCccceEeecCCcCCcc
Q 010426 365 --FPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCD----DDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKM 438 (511)
Q Consensus 365 --~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 438 (511)
.+++|+.|++ +.+.++.+ +..+..+++|+.|++++|. +.-...+|. .+ ..+++|++|++++|. ++.
T Consensus 749 ~~~l~~L~~L~L---s~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l--~~L~~L~~L~Ls~N~-L~~ 820 (876)
T 4ecn_A 749 ATTLPYLSNMDV---SYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GI--TTCPSLIQLQIGSND-IRK 820 (876)
T ss_dssp TTTCTTCCEEEC---CSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TG--GGCSSCCEEECCSSC-CCB
T ss_pred hccCCCcCEEEe---CCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChH-HH--hcCCCCCEEECCCCC-CCc
Confidence 6789999999 45566664 4467799999999998722 220344554 44 678999999999998 798
Q ss_pred cCccccCCCCCcCEEeEecCCCCcccCCCCCC----------CcccEEEecCCcchH
Q 010426 439 LSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLP----------SSILWLNIWSCPKLE 485 (511)
Q Consensus 439 l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~----------~~L~~L~l~~c~~l~ 485 (511)
+| ..+. ++|+.|+|++|+ +..+....+. ..-+..+|.+|+.|.
T Consensus 821 Ip-~~l~--~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 821 VD-EKLT--PQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp CC-SCCC--SSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred cC-Hhhc--CCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 98 4333 699999999975 4444322221 111233677888774
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=268.83 Aligned_cols=193 Identities=16% Similarity=0.182 Sum_probs=138.8
Q ss_pred ccCCCcCeeeeccCCCcCcCCCCC------CCCCCCEEEEEccCCcceecc-cCCCCCcCeEeeccCcccccccccccCC
Q 010426 271 AGFSSLRELSILNCSKFSGILPLC------KNSQLESLCIRYCDSLTFIAR-RKLPSSLKWLEIENCEKLESLPNDMHEL 343 (511)
Q Consensus 271 ~~~~~L~~L~l~~c~~l~~~~~~~------~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 343 (511)
..+++|+.++++++. + .+|.. ...+|+.|++++|.. ..... ..+ ++|++|++++|.....+|..+..+
T Consensus 273 ~~l~~L~~l~l~~n~-~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l 347 (520)
T 2z7x_B 273 TSLKALSIHQVVSDV-F--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKI-SPFLHLDFSNNLLTDTVFENCGHL 347 (520)
T ss_dssp CCCCEEEEEEEEECC-C--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCCC
T ss_pred ccCceeEeccccccc-e--ecchhhhhcccccCceeEEEcCCCcc-ccccchhhC-CcccEEEeECCccChhhhhhhccC
Confidence 345556666665532 2 22211 114688888888643 33332 233 599999999996655578888999
Q ss_pred CCcCeEEecCCCCCcccCC----CCCCCCCceEEEEecccccccc-hhhhhhccCCcccEEEEecCCCCCccccCccccc
Q 010426 344 NYLQHLCINRCPSIVRFPE----EGFPTNLVELEIRRVDVKMYKA-IIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMG 418 (511)
Q Consensus 344 ~~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 418 (511)
++|++|++++| .++.++. ...+++|+.|++ +.+.+++ ++...+..+++|+.|++++ +.. ....+.
T Consensus 348 ~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~L---s~N~l~~~l~~~~~~~l~~L~~L~Ls~-N~l-~~~~~~---- 417 (520)
T 2z7x_B 348 TELETLILQMN-QLKELSKIAEMTTQMKSLQQLDI---SQNSVSYDEKKGDCSWTKSLLSLNMSS-NIL-TDTIFR---- 417 (520)
T ss_dssp SSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEEC---CSSCCBCCGGGCSCCCCTTCCEEECCS-SCC-CGGGGG----
T ss_pred CCCCEEEccCC-ccCccccchHHHhhCCCCCEEEC---CCCcCCcccccchhccCccCCEEECcC-CCC-Ccchhh----
Confidence 99999999999 5664332 357789999999 5566666 5655678899999999999 442 244443
Q ss_pred ccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcccEEEecCCc
Q 010426 419 MMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSILWLNIWSCP 482 (511)
Q Consensus 419 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 482 (511)
..+++|++|++++|. ++.+| ..+..+++|++|++++| +++.+|...+ .++|++|++++++
T Consensus 418 -~l~~~L~~L~Ls~N~-l~~ip-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 418 -CLPPRIKVLDLHSNK-IKSIP-KQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -SCCTTCCEEECCSSC-CCCCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hhcccCCEEECCCCc-ccccc-hhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 234799999999998 99998 55669999999999995 7888887533 4789999999865
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.6e-30 Score=269.48 Aligned_cols=408 Identities=19% Similarity=0.203 Sum_probs=281.3
Q ss_pred CCCceeccEeecCCCccccCC-ccccccccccEEeccCccccccccc-cccCcCccceEEecCcccccc--cCCcccCcC
Q 010426 1 MSGWKHLRYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKLPS-KLRNLINLRHLDIMGAYLIKE--IPFGMKELK 76 (511)
Q Consensus 1 ~~~l~~Lr~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~--l~~~l~~l~ 76 (511)
|+++++||+|++++|.|..++ ++|+.+++|++|++++| .+..++. .++++++|++|++++|. +.. .|..++.++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLT 123 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccC
Confidence 568899999999999999775 67999999999999999 6666664 59999999999999998 764 456799999
Q ss_pred CCccCCceeeec-CCCc-cCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCc
Q 010426 77 NLQALSNFIVGT-DTKS-SGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSR 154 (511)
Q Consensus 77 ~L~~L~~~~~~~-~~~~-~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 154 (511)
+|++|+++++.. ...+ ..+..+.+|+.+ .+..+.+... ....+..+++|+.|+++++. .
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L--~L~~n~l~~~------~~~~l~~l~~L~~L~l~~n~------~----- 184 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNEL--EIKALSLRNY------QSQSLKSIRDIHHLTLHLSE------S----- 184 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEE--EEEETTCCEE------CTTTTTTCSEEEEEEEECSB------S-----
T ss_pred CccEEECCCCccccccCHhhhhcccccCee--eccCCccccc------ChhhhhccccCceEecccCc------c-----
Confidence 999999988763 2221 345556666654 4444443322 22346667788888887761 0
Q ss_pred chhhhhhhhcCCCCCCCCceEEEecCCCccCC---cccCCCCCCCc----------------------------cEEEEe
Q 010426 155 NESREELVLGKLKPCTSIKKLTIKGYGGKKIP---SWIADPSFSKM----------------------------EVLGLE 203 (511)
Q Consensus 155 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L----------------------------~~L~l~ 203 (511)
....... +..+++|++|+++++....++ ..+. ..+++| +.++++
T Consensus 185 -~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 185 -AFLLEIF---ADILSSVRYLELRDTNLARFQFSPLPVD-EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp -TTHHHHH---HHSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred -cccchhh---HhhcccccEEEccCCccccccccccchh-hhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 0111111 123567788888777665432 1111 123444 445555
Q ss_pred cCCCCC--C-----CCCCCCCCCccEEEecCCccceEeccCC--CCCCCCCCCCeEEcCCCCCchhhhhhccccccccCC
Q 010426 204 NCENCT--S-----LPSFGLLSSLKHLTVKGLRKLKSMGYGE--HCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFS 274 (511)
Q Consensus 204 ~~~~~~--~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 274 (511)
+|...+ . ...+..+++|+.|++.++..-....+.. ......++|+.+++.++. +..+. ......++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip----~~~~~~l~ 334 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP----CSFSQHLK 334 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCC----HHHHHHCT
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCC----HHHHhcCc
Confidence 443211 1 1134567788888887764221111111 001224689999998864 22221 11123589
Q ss_pred CcCeeeeccCCCcCcCCC-----CCCCCCCCEEEEEccCCcceecc-----cCCCCCcCeEeeccCcccccccccccCCC
Q 010426 275 SLRELSILNCSKFSGILP-----LCKNSQLESLCIRYCDSLTFIAR-----RKLPSSLKWLEIENCEKLESLPNDMHELN 344 (511)
Q Consensus 275 ~L~~L~l~~c~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 344 (511)
+|++|++++| .+.+.++ ...+++|+.|++++| .++.++. ..+ ++|++|++++| .++.+|..+..++
T Consensus 335 ~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l-~~L~~L~Ls~N-~l~~lp~~~~~~~ 410 (549)
T 2z81_A 335 SLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTL-KNLTSLDISRN-TFHPMPDSCQWPE 410 (549)
T ss_dssp TCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGC-TTCCEEECTTC-CCCCCCSCCCCCT
T ss_pred cccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcC-CCCCEEECCCC-CCccCChhhcccc
Confidence 9999999996 4443321 346899999999996 4554432 233 59999999999 7778999999999
Q ss_pred CcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCc
Q 010426 345 YLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTS 424 (511)
Q Consensus 345 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (511)
+|++|++++| .++.++.. .+++|+.|+++ .+.+++. ...+++|++|++++ + . ++.+|. . ..+++
T Consensus 411 ~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls---~N~l~~~----~~~l~~L~~L~Ls~-N-~-l~~ip~--~--~~l~~ 474 (549)
T 2z81_A 411 KMRFLNLSST-GIRVVKTC-IPQTLEVLDVS---NNNLDSF----SLFLPRLQELYISR-N-K-LKTLPD--A--SLFPV 474 (549)
T ss_dssp TCCEEECTTS-CCSCCCTT-SCTTCSEEECC---SSCCSCC----CCCCTTCCEEECCS-S-C-CSSCCC--G--GGCTT
T ss_pred cccEEECCCC-Ccccccch-hcCCceEEECC---CCChhhh----cccCChhcEEECCC-C-c-cCcCCC--c--ccCcc
Confidence 9999999999 57766543 45799999995 5566553 25789999999999 3 4 778885 2 45899
Q ss_pred cceEeecCCcCCcccCccccCCCCCcCEEeEecCCC
Q 010426 425 LSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPN 460 (511)
Q Consensus 425 L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~ 460 (511)
|++|++++|. ++.++...+..+++|+.|++++|+-
T Consensus 475 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 475 LLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCc
Confidence 9999999998 8888767799999999999999864
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.4e-31 Score=281.02 Aligned_cols=359 Identities=17% Similarity=0.168 Sum_probs=252.1
Q ss_pred cccCCccccccccccEEeccCcccccc------------------cccccc--CcCccceEEecCcccccccCCcccCcC
Q 010426 17 IRNLPKPTCSLINLQVLLLRDCYYLLK------------------LPSKLR--NLINLRHLDIMGAYLIKEIPFGMKELK 76 (511)
Q Consensus 17 i~~l~~~~~~l~~L~~L~L~~n~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~l~~l~~~l~~l~ 76 (511)
++.+|++|+.+++|++|+|++| .+.. +|+.++ ++++|++|++++|.....+|..+++++
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 3357888999999999999999 4555 999998 999999999999996788998899999
Q ss_pred CCccCCceeee-cCC--CccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCC
Q 010426 77 NLQALSNFIVG-TDT--KSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDS 153 (511)
Q Consensus 77 ~L~~L~~~~~~-~~~--~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 153 (511)
+|++|+++++. +.. .|..+..+. .+..+++|+.|++++|.+.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~--------------------------~~~~l~~L~~L~L~~n~l~--------- 318 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALA--------------------------DAPVGEKIQIIYIGYNNLK--------- 318 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHH--------------------------HSGGGGTCCEEECCSSCCS---------
T ss_pred CCCEEECcCCCCCccccchHHHHhhh--------------------------ccccCCCCCEEECCCCcCC---------
Confidence 99999987765 321 111111110 1223367777777776111
Q ss_pred cchhhhhhhhc--CCCCCCCCceEEEecCCCc-cCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCC-ccEEEecCC
Q 010426 154 RNESREELVLG--KLKPCTSIKKLTIKGYGGK-KIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSS-LKHLTVKGL 228 (511)
Q Consensus 154 ~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~-L~~L~l~~~ 228 (511)
.... .+..+++|++|+++++... .+| .+. .+++|+.|++++|... .+| .+..+++ |++|++++|
T Consensus 319 -------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 319 -------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG--SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp -------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE--EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred -------ccCchhhhccCCCCCEEeCcCCcCccchh-hhC--CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 1112 3555677888888887776 666 333 4677888888877643 555 6777777 888888877
Q ss_pred ccceEeccCCCCCCC--CCCCCeEEcCCCCCchhhhhhcc--ccccccCCCcCeeeeccCCCcCcCCCCC---CCCCCCE
Q 010426 229 RKLKSMGYGEHCSNP--FQSLETLWFEDLPEWEYWDTKFE--ENGVAGFSSLRELSILNCSKFSGILPLC---KNSQLES 301 (511)
Q Consensus 229 ~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~L~~ 301 (511)
.. ..++ ..+.. +++|+.|+++++.........+. ......+++|+.|++++| .++ .+|.. .+++|+.
T Consensus 388 ~l-~~lp---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~-~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 388 KL-KYIP---NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QIS-KFPKELFSTGSPLSS 461 (636)
T ss_dssp CC-SSCC---SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCC-SCCTHHHHTTCCCSE
T ss_pred cC-cccc---hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccC-cCCHHHHccCCCCCE
Confidence 63 3443 12222 34788888877653221110011 000114568999999985 555 55543 5789999
Q ss_pred EEEEccCCcceecccCCC--C-------CcCeEeeccCccccccccccc--CCCCcCeEEecCCCCCcccCCC-CCCCCC
Q 010426 302 LCIRYCDSLTFIARRKLP--S-------SLKWLEIENCEKLESLPNDMH--ELNYLQHLCINRCPSIVRFPEE-GFPTNL 369 (511)
Q Consensus 302 L~l~~~~~l~~~~~~~~~--~-------~L~~L~l~~~~~l~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~-~~~~~L 369 (511)
|++++| .++.++...+. . +|+.|++++| .++.+|..+. .+++|++|++++| .++.++.. ..+++|
T Consensus 462 L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L 538 (636)
T 4eco_A 462 INLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTL 538 (636)
T ss_dssp EECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSC
T ss_pred EECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCC
Confidence 999995 45566654443 1 8999999999 5668888887 9999999999999 56666543 567999
Q ss_pred ceEEEEecc---cccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccC
Q 010426 370 VELEIRRVD---VKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLS 440 (511)
Q Consensus 370 ~~L~l~~~~---~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 440 (511)
+.|++++|. .+.+....+..+..+++|+.|++++ +. ++.+|. ...++|++|++++|+ +..+.
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~--N~-l~~ip~-----~~~~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS--ND-IRKVNE-----KITPNISVLDIKDNP-NISID 603 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS--SC-CCBCCS-----CCCTTCCEEECCSCT-TCEEE
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCC--Cc-CCccCH-----hHhCcCCEEECcCCC-Ccccc
Confidence 999996332 4555666667889999999999999 44 888887 334899999999998 76654
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.4e-30 Score=267.47 Aligned_cols=410 Identities=17% Similarity=0.144 Sum_probs=275.3
Q ss_pred CCCceeccEeecCCCccccCC-ccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCC-cccCcCC
Q 010426 1 MSGWKHLRYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPF-GMKELKN 77 (511)
Q Consensus 1 ~~~l~~Lr~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~ 77 (511)
|+++++||+|++++|.|..++ ..|+.+++|++|++++| .+..++ ..|+++++|++|++++|. +..++. .++.+++
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT 125 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTT
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccc-cccCCCcccccccc
Confidence 568899999999999999885 66999999999999999 565555 678999999999999998 888776 4899999
Q ss_pred CccCCceeeecCC--CccCccccccccccCceEEEccccCCCChhhhHHhcccccc------------------------
Q 010426 78 LQALSNFIVGTDT--KSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQ------------------------ 131 (511)
Q Consensus 78 L~~L~~~~~~~~~--~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~------------------------ 131 (511)
|++|+++++.+.. .|..+..+.+|+.+ .+..+.+.... ...+..+.
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L--~l~~n~l~~~~------~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~ 197 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHL--DLSSNKIQSIY------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEE--ECTTSCCCEEC------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred ccEEecCCCccceecChhhhcccCCCCEE--eCcCCccceec------HHHccchhccchhhhhcccCCCCceecCHHHh
Confidence 9999998887765 24556666666644 22222221110 11122222
Q ss_pred ---ccceeEEeeecccccCCCCCCCcchhhhhhhhc---------------------------CCCCCC--CCceEEEec
Q 010426 132 ---YLEALSLQWRSQLQWGSQFDDSRNESREELVLG---------------------------KLKPCT--SIKKLTIKG 179 (511)
Q Consensus 132 ---~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~l~~~~--~L~~L~l~~ 179 (511)
.|+.|+++++.. ........+. .+..+. .++.+++..
T Consensus 198 ~~~~L~~L~l~~n~~-----------~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 198 KEIRLHKLTLRNNFD-----------SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp TTCEEEEEEEESCCS-----------CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred ccCcceeEecccccc-----------cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 344444444300 0000000000 011111 123333333
Q ss_pred CC-C-ccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCC
Q 010426 180 YG-G-KKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLP 256 (511)
Q Consensus 180 ~~-~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 256 (511)
+. . ...+..+. .+++|+.|++++|.. ..+| .+..+ +|++|++++|... .++. ..+++|+.|++.++.
T Consensus 267 ~~~~~~~~~~~~~--~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~-~l~~-----~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 267 LDYYLDDIIDLFN--CLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFG-QFPT-----LKLKSLKRLTFTSNK 336 (570)
T ss_dssp TTEEESCSTTTTG--GGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCBCS-SCCB-----CBCSSCCEEEEESCB
T ss_pred chhhhhhchhhhc--CcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCccc-ccCc-----ccccccCEEeCcCCc
Confidence 31 1 12233333 578899999998864 4566 66677 8999999988733 3332 348889999998876
Q ss_pred CchhhhhhccccccccCCCcCeeeeccCCCcCcCC--C--CCCCCCCCEEEEEccCCcceeccc--CCCCCcCeEeeccC
Q 010426 257 EWEYWDTKFEENGVAGFSSLRELSILNCSKFSGIL--P--LCKNSQLESLCIRYCDSLTFIARR--KLPSSLKWLEIENC 330 (511)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~--~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~ 330 (511)
...... ...+++|++|++++| .+.... + ...+++|+.|++++|. +..++.. .+ ++|+.|++++|
T Consensus 337 ~~~~~~-------~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l-~~L~~L~l~~n 406 (570)
T 2z63_A 337 GGNAFS-------EVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGL-EQLEHLDFQHS 406 (570)
T ss_dssp SCCBCC-------CCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETC-TTCCEEECTTS
T ss_pred cccccc-------cccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc-ccccccccccc-CCCCEEEccCC
Confidence 433222 257889999999886 333211 1 2367899999999964 4444432 23 59999999999
Q ss_pred ccccccc-ccccCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEeccccccc-chhhhhhccCCcccEEEEecCCC
Q 010426 331 EKLESLP-NDMHELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYK-AIIHWGLHRLTSLRRLWIEGCDD 406 (511)
Q Consensus 331 ~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~ 406 (511)
......+ ..+..+++|++|++++| .+..... ...+++|++|++. .+.+. ...+..+..+++|+.|++++ |.
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~p~~~~~l~~L~~L~l~~-n~ 481 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMA---GNSFQENFLPDIFTELRNLTFLDLSQ-CQ 481 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECT---TCEEGGGEECSCCTTCTTCCEEECTT-SC
T ss_pred ccccccchhhhhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECc---CCcCccccchhhhhcccCCCEEECCC-Cc
Confidence 5444434 46789999999999999 4444332 2567999999995 44554 34456788999999999999 43
Q ss_pred CCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCC
Q 010426 407 DEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNL 461 (511)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l 461 (511)
+..++...+ ..+++|++|++++|. ++.++...+..+++|++|++++|+--
T Consensus 482 --l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 482 --LEQLSPTAF--NSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp --CCEECTTTT--TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred --cccCChhhh--hcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCccc
Confidence 666643144 678999999999998 88887678999999999999997543
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.3e-28 Score=255.57 Aligned_cols=430 Identities=15% Similarity=0.098 Sum_probs=258.9
Q ss_pred eeccEeecCCCccccCCccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccC-CcccCcCCCccCC
Q 010426 5 KHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIP-FGMKELKNLQALS 82 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~ 82 (511)
...++++++++.++.+|..+. ++|++|++++| .+..++ ..++++++|++|++++|. +..++ ..++.+++|++|+
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEE
Confidence 344788888888888887654 78888888888 555555 568888888888888888 66664 4588888888888
Q ss_pred ceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhh
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELV 162 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (511)
++++.+...|.. .+.+|+.+ .+..+.+.... .+..+..+++|+.|++++|.. ....
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L--~Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~n~l---------------~~~~ 162 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHL--DLSFNDFDVLP-----VCKEFGNLTKLTFLGLSAAKF---------------RQLD 162 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEE--ECCSSCCSBCC-----CCGGGGGCTTCCEEEEECSBC---------------CTTT
T ss_pred CCCCcCCccCcc--ccccCCEE--ECCCCCccccC-----chHhhcccCcccEEecCCCcc---------------ccCc
Confidence 877776654333 44444433 23333322211 113456677788888877611 0111
Q ss_pred hcCCCCCCCCceEEEecCCC--ccC-CcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccc-eEecc
Q 010426 163 LGKLKPCTSIKKLTIKGYGG--KKI-PSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKL-KSMGY 236 (511)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~-~~~~~ 236 (511)
+..+..+ +|+.|+++++.. ... +..+..-....+ .+++++|.....++ .+..+++|+.++++++... ..+.-
T Consensus 163 ~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~ 240 (562)
T 3a79_B 163 LLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT 240 (562)
T ss_dssp TGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH
T ss_pred hhhhhhc-eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH
Confidence 1222222 347888877765 222 222221001111 34555555444444 3456677777777765310 00000
Q ss_pred CCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCC----------------------
Q 010426 237 GEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLC---------------------- 294 (511)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~---------------------- 294 (511)
....+..++.|+.+++.++..-......... ....++|++|++++| .+.+.+|..
T Consensus 241 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~--~~~~~~L~~L~l~~n-~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~ 317 (562)
T 3a79_B 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQ--FFWPRPVEYLNIYNL-TITERIDREEFTYSETALKSLMIEHVKNQVF 317 (562)
T ss_dssp HHHHHHSCSSCEEEEEEEEEECHHHHHHHHH--HHTTSSEEEEEEEEE-EECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred HHHHHhccCcceEEEecCCcCcHHHHHHHHH--hhhcccccEEEEecc-Eeeccccchhhhcccccchheehhhccccee
Confidence 0001112444444444433211000000000 011224555555543 222222211
Q ss_pred -----------CCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCC-
Q 010426 295 -----------KNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPE- 362 (511)
Q Consensus 295 -----------~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~- 362 (511)
...+|+.|++++|.. .........++|++|++++|.....+|..+..+++|++|++++| .++.++.
T Consensus 318 ~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 395 (562)
T 3a79_B 318 LFSKEALYSVFAEMNIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKV 395 (562)
T ss_dssp SSCHHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHH
T ss_pred ecChhhhhhhhccCcceEEEccCCCc-ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccc
Confidence 124578888887643 22222122359999999999666667888999999999999999 6666542
Q ss_pred ---CCCCCCCceEEEEecccccccc-hhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcc
Q 010426 363 ---EGFPTNLVELEIRRVDVKMYKA-IIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKM 438 (511)
Q Consensus 363 ---~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 438 (511)
...+++|++|++ +.+.++. ++...+..+++|+.|++++ +.. ....+. ..+++|++|++++|. ++.
T Consensus 396 ~~~~~~l~~L~~L~l---~~N~l~~~~~~~~~~~l~~L~~L~l~~-n~l-~~~~~~-----~l~~~L~~L~L~~N~-l~~ 464 (562)
T 3a79_B 396 ALMTKNMSSLETLDV---SLNSLNSHAYDRTCAWAESILVLNLSS-NML-TGSVFR-----CLPPKVKVLDLHNNR-IMS 464 (562)
T ss_dssp HHTTTTCTTCCEEEC---TTSCCBSCCSSCCCCCCTTCCEEECCS-SCC-CGGGGS-----SCCTTCSEEECCSSC-CCC
T ss_pred hhhhcCCCCCCEEEC---CCCcCCCccChhhhcCcccCCEEECCC-CCC-Ccchhh-----hhcCcCCEEECCCCc-Ccc
Confidence 356789999999 5666666 5655678899999999999 442 233333 223799999999997 999
Q ss_pred cCccccCCCCCcCEEeEecCCCCcccCCCC--CCCcccEEEecCCc
Q 010426 439 LSSKGFQSLTSLEFLWIDDCPNLTSFPEAG--LPSSILWLNIWSCP 482 (511)
Q Consensus 439 l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~ 482 (511)
+| ..+..+++|++|++++ ++++.+|... ..++|++|++++++
T Consensus 465 ip-~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 465 IP-KDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CC-TTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cC-hhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 98 5555999999999999 5788888742 35799999999865
No 20
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.9e-29 Score=252.16 Aligned_cols=391 Identities=19% Similarity=0.186 Sum_probs=234.9
Q ss_pred CceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCcc-------------ceEEecCcccccccC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINL-------------RHLDIMGAYLIKEIP 69 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L-------------~~L~l~~~~~l~~l~ 69 (511)
+.++||+|++++|.+..+|++++.+++|++|++++|.....+|.+++++++| ++|++++|. +..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 3578999999999999999999999999999999996667899989988875 999999998 88887
Q ss_pred CcccCcCCCccCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccc-cccceeEEeeecccccCC
Q 010426 70 FGMKELKNLQALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEK-QYLEALSLQWRSQLQWGS 148 (511)
Q Consensus 70 ~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~ 148 (511)
.. .++|++|+++.+.+...|..+ ..|+.+ .+..+.+... ... ++|+.|++++|..
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~~---~~L~~L--~l~~n~l~~l-----------~~~~~~L~~L~L~~n~l----- 143 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPELP---QSLKSL--LVDNNNLKAL-----------SDLPPLLEYLGVSNNQL----- 143 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCCC---TTCCEE--ECCSSCCSCC-----------CSCCTTCCEEECCSSCC-----
T ss_pred CC---cCCCCEEEccCCcCCcccccc---CCCcEE--ECCCCccCcc-----------cCCCCCCCEEECcCCCC-----
Confidence 63 368899988887776554333 333322 2222222221 111 5899999988711
Q ss_pred CCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCC
Q 010426 149 QFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGL 228 (511)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~ 228 (511)
. .+..+..+++|++|+++++....+|.. .++|++|++++|. +..+|.++.+++|++|++++|
T Consensus 144 ----------~--~lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 144 ----------E--KLPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp ----------S--SCCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSS
T ss_pred ----------C--CCcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCc-CCcCccccCCCCCCEEECCCC
Confidence 0 123477788999999999988877653 3589999999996 455788899999999999988
Q ss_pred ccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccC
Q 010426 229 RKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCD 308 (511)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 308 (511)
.. ..++ ...++|+.|++.++.. ..+ + ....+++|++|+++++ +++ .++. .+++|+.|++++|
T Consensus 206 ~l-~~l~------~~~~~L~~L~l~~n~l-~~l----p--~~~~l~~L~~L~l~~N-~l~-~l~~-~~~~L~~L~l~~N- 267 (454)
T 1jl5_A 206 SL-KKLP------DLPLSLESIVAGNNIL-EEL----P--ELQNLPFLTTIYADNN-LLK-TLPD-LPPSLEALNVRDN- 267 (454)
T ss_dssp CC-SSCC------CCCTTCCEEECCSSCC-SSC----C--CCTTCTTCCEEECCSS-CCS-SCCS-CCTTCCEEECCSS-
T ss_pred cC-CcCC------CCcCcccEEECcCCcC-Ccc----c--ccCCCCCCCEEECCCC-cCC-cccc-cccccCEEECCCC-
Confidence 63 2222 1246899999988742 222 1 1457889999999985 555 3443 4588999999985
Q ss_pred CcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhh
Q 010426 309 SLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHW 388 (511)
Q Consensus 309 ~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 388 (511)
.++.++. .+++|+.|++++| .++.++.. .++|++|++++| .++.++. .+++|++|+++ .+.++.++.
T Consensus 268 ~l~~l~~--~~~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N-~l~~i~~--~~~~L~~L~Ls---~N~l~~lp~- 334 (454)
T 1jl5_A 268 YLTDLPE--LPQSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSN-EIRSLCD--LPPSLEELNVS---NNKLIELPA- 334 (454)
T ss_dssp CCSCCCC--CCTTCCEEECCSS-CCSEESCC---CTTCCEEECCSS-CCSEECC--CCTTCCEEECC---SSCCSCCCC-
T ss_pred cccccCc--ccCcCCEEECcCC-ccCcccCc---CCcCCEEECcCC-cCCcccC--CcCcCCEEECC---CCccccccc-
Confidence 4555543 3468999999998 45554432 378999999999 5665543 34689999994 456665432
Q ss_pred hhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcc---cCccccCCC-------------CCcCE
Q 010426 389 GLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKM---LSSKGFQSL-------------TSLEF 452 (511)
Q Consensus 389 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---l~~~~~~~l-------------~~L~~ 452 (511)
.+++|+.|++++ + . ++.+|. .+++|++|++++|. ++. +| ..+.++ ++|++
T Consensus 335 ---~~~~L~~L~L~~-N-~-l~~lp~------~l~~L~~L~L~~N~-l~~l~~ip-~~l~~L~~n~~~~~i~~~~~~L~~ 400 (454)
T 1jl5_A 335 ---LPPRLERLIASF-N-H-LAEVPE------LPQNLKQLHVEYNP-LREFPDIP-ESVEDLRMNSHLAEVPELPQNLKQ 400 (454)
T ss_dssp ---CCTTCCEEECCS-S-C-CSCCCC------CCTTCCEEECCSSC-CSSCCCCC-TTCCEEECCC--------------
T ss_pred ---cCCcCCEEECCC-C-c-cccccc------hhhhccEEECCCCC-CCcCCCCh-HHHHhhhhcccccccccccCcCCE
Confidence 268999999999 3 3 777774 36889999999988 665 44 555555 78999
Q ss_pred EeEecCCCCcccCCCCCCCcccEEEecCCcch
Q 010426 453 LWIDDCPNLTSFPEAGLPSSILWLNIWSCPKL 484 (511)
Q Consensus 453 L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l 484 (511)
|++++ +.++.+|. +|++++.|.+.+|.--
T Consensus 401 L~ls~-N~l~~~~~--iP~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 401 LHVET-NPLREFPD--IPESVEDLRMNSERVV 429 (454)
T ss_dssp --------------------------------
T ss_pred EECCC-CcCCcccc--chhhHhheeCcCcccC
Confidence 99998 46665544 6788888888876543
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=5.8e-28 Score=244.66 Aligned_cols=341 Identities=18% Similarity=0.220 Sum_probs=197.2
Q ss_pred ceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCc
Q 010426 4 WKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSN 83 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~ 83 (511)
+++++.|+++++.+..+|. +..+++|++|++++| .+..+|. ++.+++|++|++++|. +..++. ++.+++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEEC
Confidence 5788999999999988874 788999999999999 7777776 8999999999999998 777765 888999999987
Q ss_pred eeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhh
Q 010426 84 FIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVL 163 (511)
Q Consensus 84 ~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (511)
+++.+... . .+..+++|+.|++++|... ..
T Consensus 120 ~~n~l~~~-~--------------------------------~~~~l~~L~~L~l~~n~l~-----------------~~ 149 (466)
T 1o6v_A 120 FNNQITDI-D--------------------------------PLKNLTNLNRLELSSNTIS-----------------DI 149 (466)
T ss_dssp CSSCCCCC-G--------------------------------GGTTCTTCSEEEEEEEEEC-----------------CC
T ss_pred CCCCCCCC-h--------------------------------HHcCCCCCCEEECCCCccC-----------------CC
Confidence 66644332 0 1334457777777776100 11
Q ss_pred cCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCC
Q 010426 164 GKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNP 243 (511)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 243 (511)
..+..+++|++|++++ ....++. +. .+++|+.|++++|. +..++.+..+++|++|++++|......+ +..
T Consensus 150 ~~~~~l~~L~~L~l~~-~~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~~ 219 (466)
T 1o6v_A 150 SALSGLTSLQQLSFGN-QVTDLKP-LA--NLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITP-----LGI 219 (466)
T ss_dssp GGGTTCTTCSEEEEEE-SCCCCGG-GT--TCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-----GGG
T ss_pred hhhccCCcccEeecCC-cccCchh-hc--cCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCccccccc-----ccc
Confidence 2345567777777753 2333332 22 56777777777776 4555566677777777777765322211 222
Q ss_pred CCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcC
Q 010426 244 FQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLK 323 (511)
Q Consensus 244 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 323 (511)
+++|+.|++.++..- .+. ....+++|+.|++++| .+.+..+...++ +|+
T Consensus 220 l~~L~~L~l~~n~l~-~~~------~l~~l~~L~~L~l~~n-~l~~~~~~~~l~-----------------------~L~ 268 (466)
T 1o6v_A 220 LTNLDELSLNGNQLK-DIG------TLASLTNLTDLDLANN-QISNLAPLSGLT-----------------------KLT 268 (466)
T ss_dssp CTTCCEEECCSSCCC-CCG------GGGGCTTCSEEECCSS-CCCCCGGGTTCT-----------------------TCS
T ss_pred cCCCCEEECCCCCcc-cch------hhhcCCCCCEEECCCC-ccccchhhhcCC-----------------------CCC
Confidence 555555555554311 110 0234455555555553 222222222333 555
Q ss_pred eEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEec
Q 010426 324 WLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 324 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
.|++++| .++.++. +..+++|++|++++| .++.++....+++|+.|+++ .+.+++..+ +..+++|+.|++++
T Consensus 269 ~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~---~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 269 ELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLY---FNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp EEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECC---SSCCSCCGG--GGGCTTCCEEECCS
T ss_pred EEECCCC-ccCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECc---CCcCCCchh--hccCccCCEeECCC
Confidence 5555555 3333332 445555555555555 34444334445555555553 233443332 44556666666665
Q ss_pred CCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecC
Q 010426 404 CDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDC 458 (511)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 458 (511)
| . +..++ .. ..+++|++|++++|. ++.++ .+..+++|++|++++|
T Consensus 341 -n-~-l~~~~--~l--~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 341 -N-K-VSDVS--SL--ANLTNINWLSAGHNQ-ISDLT--PLANLTRITQLGLNDQ 385 (466)
T ss_dssp -S-C-CCCCG--GG--TTCTTCCEEECCSSC-CCBCG--GGTTCTTCCEEECCCE
T ss_pred -C-c-cCCch--hh--ccCCCCCEEeCCCCc-cCccc--hhhcCCCCCEEeccCC
Confidence 2 2 34332 22 345566666666655 55443 1555666666666653
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=253.90 Aligned_cols=417 Identities=17% Similarity=0.181 Sum_probs=269.9
Q ss_pred eeccEeecCCCccccCC-ccccccccccEEeccCccccccc-cccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 5 KHLRYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
++|++|++++|.|..++ .+|..+++|++|++++| .+..+ |..++++++|++|++++|. +..+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEe
Confidence 57899999999998876 67899999999999999 55544 6778999999999999998 8888876 889999999
Q ss_pred ceeeecCCC--ccCccccccccccCceEEEccccCCCChhhhHHhcccccccc--ceeEEeeecc--cccCCC-CCCCc-
Q 010426 83 NFIVGTDTK--SSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYL--EALSLQWRSQ--LQWGSQ-FDDSR- 154 (511)
Q Consensus 83 ~~~~~~~~~--~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~-~~~~~- 154 (511)
++++.+... |..+..+.+|+.+ .+..+.+.. ..+..+++| +.|++++|.. ...... +....
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L--~L~~n~l~~---------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFL--GLSTTHLEK---------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEE--EEEESSCCG---------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred ccCCccccccchhhhccCCcceEE--EecCcccch---------hhccccccceeeEEEeeccccccccccccccccccc
Confidence 888887652 3556667777755 454444322 234455666 8999988744 111110 00000
Q ss_pred ---------chhhhhhhhcCCCCCCCCceEEEecCC-------Cc-cCCcccCCCCCCCccEEEEecCCCCCC----CCC
Q 010426 155 ---------NESREELVLGKLKPCTSIKKLTIKGYG-------GK-KIPSWIADPSFSKMEVLGLENCENCTS----LPS 213 (511)
Q Consensus 155 ---------~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~ 213 (511)
...........+..+++|+.++++++. .. .++ .+. .+++|+.|++++|..... ++.
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~--~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ--TNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG--GCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhc--cccchhhccccccccCHHHHHHHHH
Confidence 000001111244556778888887764 11 112 222 467788888777652211 000
Q ss_pred CCCCCCccEEEecCCccceEeccCC--CCCCCCCCCCeEEcCCCCC-ch-hhhhhccccccccCCCcCeeeeccCCCcCc
Q 010426 214 FGLLSSLKHLTVKGLRKLKSMGYGE--HCSNPFQSLETLWFEDLPE-WE-YWDTKFEENGVAGFSSLRELSILNCSKFSG 289 (511)
Q Consensus 214 l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~-l~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 289 (511)
....++|++|++++|.....++... .....++.|+.+++.+... ++ .+. .. ...-++|+.|+++++. +..
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~---~~--~~~~~~L~~L~l~~n~-l~~ 316 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI---YE--IFSNMNIKNFTVSGTR-MVH 316 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH---HH--HHHTCCCSEEEEESSC-CCC
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh---hc--ccccCceeEEEcCCCc-ccc
Confidence 0113577788887765322333100 0014466666666655432 11 000 00 0012569999999864 442
Q ss_pred CCCCCCCCCCCEEEEEccCCcceecc--cCCCCCcCeEeeccCcccc--cccccccCCCCcCeEEecCCCCCcc-cCCC-
Q 010426 290 ILPLCKNSQLESLCIRYCDSLTFIAR--RKLPSSLKWLEIENCEKLE--SLPNDMHELNYLQHLCINRCPSIVR-FPEE- 363 (511)
Q Consensus 290 ~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~- 363 (511)
......+++|++|++++|.....++. ..+ ++|++|++++|.... .+|..+..+++|++|++++| .++. ++..
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~ 394 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGD 394 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCS
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccch
Confidence 22125788999999999643332222 123 599999999994432 45567899999999999999 4554 6543
Q ss_pred -CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCcc
Q 010426 364 -GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSK 442 (511)
Q Consensus 364 -~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 442 (511)
..+++|++|+++ .+.+++..+..+. ++|+.|++++ | . +..+|. .. ..+++|++|++++|. ++.+|..
T Consensus 395 ~~~l~~L~~L~Ls---~N~l~~~~~~~l~--~~L~~L~Ls~-N-~-l~~ip~-~~--~~l~~L~~L~L~~N~-l~~l~~~ 462 (520)
T 2z7x_B 395 CSWTKSLLSLNMS---SNILTDTIFRCLP--PRIKVLDLHS-N-K-IKSIPK-QV--VKLEALQELNVASNQ-LKSVPDG 462 (520)
T ss_dssp CCCCTTCCEEECC---SSCCCGGGGGSCC--TTCCEEECCS-S-C-CCCCCG-GG--GGCTTCCEEECCSSC-CCCCCTT
T ss_pred hccCccCCEEECc---CCCCCcchhhhhc--ccCCEEECCC-C-c-ccccch-hh--hcCCCCCEEECCCCc-CCccCHH
Confidence 567899999995 4555544333332 7999999999 3 4 788886 55 478999999999998 9999855
Q ss_pred ccCCCCCcCEEeEecCC
Q 010426 443 GFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 443 ~~~~l~~L~~L~l~~c~ 459 (511)
.+..+++|++|++++|+
T Consensus 463 ~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccCCcccEEECcCCC
Confidence 68999999999999964
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.4e-27 Score=251.72 Aligned_cols=199 Identities=16% Similarity=0.089 Sum_probs=138.5
Q ss_pred cCCCcCeeeeccCCCcCcC--CC--CCCCCCCCEEEEEccCCcceeccc-CCCCCcCeEeeccCccccccc-ccccCCCC
Q 010426 272 GFSSLRELSILNCSKFSGI--LP--LCKNSQLESLCIRYCDSLTFIARR-KLPSSLKWLEIENCEKLESLP-NDMHELNY 345 (511)
Q Consensus 272 ~~~~L~~L~l~~c~~l~~~--~~--~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~ 345 (511)
.+++|+.++++++ .+... .+ .....+|+.+++..+... ..... ...++|+.+++.++......+ ..+..+++
T Consensus 369 ~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 369 DLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp BCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccchhhcc-ccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccc
Confidence 4566777766663 22211 11 114566777776664322 22211 112578888888876555443 35678889
Q ss_pred cCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCC
Q 010426 346 LQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPT 423 (511)
Q Consensus 346 L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 423 (511)
++.+++++| .+...... ..+++++.|+++ +++......+..+..+++|++|++++ | . +..++...+ ..++
T Consensus 447 l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls--~N~~~~~~~~~~~~~l~~L~~L~Ls~-N-~-L~~l~~~~f--~~l~ 518 (635)
T 4g8a_A 447 LIYLDISHT-HTRVAFNGIFNGLSSLEVLKMA--GNSFQENFLPDIFTELRNLTFLDLSQ-C-Q-LEQLSPTAF--NSLS 518 (635)
T ss_dssp CCEEECTTS-CCEECCTTTTTTCTTCCEEECT--TCEEGGGEECSCCTTCTTCCEEECTT-S-C-CCEECTTTT--TTCT
T ss_pred ccccccccc-ccccccccccccchhhhhhhhh--hcccccccCchhhhhccccCEEECCC-C-c-cCCcChHHH--cCCC
Confidence 999999988 44444332 567899999996 55556666666789999999999999 3 4 777765244 6789
Q ss_pred ccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCC---CCCcccEEEecCCc
Q 010426 424 SLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAG---LPSSILWLNIWSCP 482 (511)
Q Consensus 424 ~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~ 482 (511)
+|++|++++|. ++.++...+..+++|++|+|++ ++++.++... ++++|++|+++++|
T Consensus 519 ~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 519 SLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCEEECCCCc-CCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999999998 9999878899999999999999 5777775533 35789999998633
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.5e-27 Score=253.17 Aligned_cols=411 Identities=13% Similarity=0.127 Sum_probs=282.4
Q ss_pred ccccEEeccCccccccccccccCcCccceEEe-cCcccccccCCc-----------------------------------
Q 010426 28 INLQVLLLRDCYYLLKLPSKLRNLINLRHLDI-MGAYLIKEIPFG----------------------------------- 71 (511)
Q Consensus 28 ~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l-~~~~~l~~l~~~----------------------------------- 71 (511)
.++..|+|++|.....+|+++++|++|++|++ ++|......|..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999777799999999999999999 777521221110
Q ss_pred --------------c--cCcCCCccCCcee--eecCCCccCccccccccccCceEEEccccCC--C---------Chhhh
Q 010426 72 --------------M--KELKNLQALSNFI--VGTDTKSSGLKDLKSLAFVGGELSISGLENV--I---------YPWEA 122 (511)
Q Consensus 72 --------------l--~~l~~L~~L~~~~--~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~--~---------~~~~~ 122 (511)
+ .....++.+.+.. +.+...|..+..+.+|+.| .+..+.+... . .....
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L--~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII--YFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEE--EEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEE--ECcCCcCCCCccccccccccccccccc
Confidence 0 1111222222111 2222233445555555544 3444443320 0 00012
Q ss_pred HHhccc--cccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCC-Ccc--CCcccC-----CC
Q 010426 123 SEAMLC--EKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYG-GKK--IPSWIA-----DP 192 (511)
Q Consensus 123 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~--~~~~~~-----~~ 192 (511)
.+..+. .+++|+.|++++|.+ .......+..+++|+.|++++|. ... +|..+. ..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l---------------~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~ 545 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPN---------------MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTT---------------CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred CChhhhhccCCCCCEEECcCCCC---------------CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence 444555 889999999998821 11223456778999999999997 553 554322 12
Q ss_pred CCCCccEEEEecCCCCCCCCC---CCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccc
Q 010426 193 SFSKMEVLGLENCENCTSLPS---FGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENG 269 (511)
Q Consensus 193 ~~~~L~~L~l~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 269 (511)
.+++|+.|++++|... .+|. ++.+++|+.|++++|.. ..++ .+..+++|+.|+++++... .+. ..
T Consensus 546 ~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp----~~~~L~~L~~L~Ls~N~l~-~lp-----~~ 613 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV-RHLE----AFGTNVKLTDLKLDYNQIE-EIP-----ED 613 (876)
T ss_dssp TTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC-CBCC----CCCTTSEESEEECCSSCCS-CCC-----TT
T ss_pred ccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc-ccch----hhcCCCcceEEECcCCccc-cch-----HH
Confidence 5679999999999854 7776 89999999999999874 3443 4566899999999987532 221 11
Q ss_pred cccCCC-cCeeeeccCCCcCcCCCCC----CCCCCCEEEEEccCCcceeccc-----CCC-CCcCeEeeccCcccccccc
Q 010426 270 VAGFSS-LRELSILNCSKFSGILPLC----KNSQLESLCIRYCDSLTFIARR-----KLP-SSLKWLEIENCEKLESLPN 338 (511)
Q Consensus 270 ~~~~~~-L~~L~l~~c~~l~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~-----~~~-~~L~~L~l~~~~~l~~l~~ 338 (511)
...+++ |+.|++++| .+. .+|.. ..++|+.|++++|.....++.. .+. ++|+.|++++| .++.+|.
T Consensus 614 l~~l~~~L~~L~Ls~N-~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~ 690 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHN-KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPT 690 (876)
T ss_dssp SCEECTTCCEEECCSS-CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCH
T ss_pred HhhccccCCEEECcCC-CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCH
Confidence 456778 999999996 455 55533 3345999999997543322211 111 48999999999 5667877
Q ss_pred cc-cCCCCcCeEEecCCCCCcccCCCCC---------CCCCceEEEEecccccccchhhhhhc--cCCcccEEEEecCCC
Q 010426 339 DM-HELNYLQHLCINRCPSIVRFPEEGF---------PTNLVELEIRRVDVKMYKAIIHWGLH--RLTSLRRLWIEGCDD 406 (511)
Q Consensus 339 ~~-~~~~~L~~L~l~~~~~l~~~~~~~~---------~~~L~~L~l~~~~~~~l~~~~~~~~~--~l~~L~~L~l~~~~~ 406 (511)
.+ ..+++|++|++++| .++.++...+ +++|+.|+++ .+.++.++. .+. .+++|+.|++++ +
T Consensus 691 ~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls---~N~L~~lp~-~l~~~~l~~L~~L~Ls~-N- 763 (876)
T 4ecn_A 691 ELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLR---FNKLTSLSD-DFRATTLPYLSNMDVSY-N- 763 (876)
T ss_dssp HHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECC---SSCCCCCCG-GGSTTTCTTCCEEECCS-S-
T ss_pred HHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECC---CCCCccchH-HhhhccCCCcCEEEeCC-C-
Confidence 65 48999999999999 6777665421 1289999995 456665553 444 899999999999 3
Q ss_pred CCccccCcccccccCCCccceEeecC------CcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCCCCcccEEEecC
Q 010426 407 DEAECFPDEEMGMMLPTSLSYLNIIG------FRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLPSSILWLNIWS 480 (511)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 480 (511)
. +..+|. .. ..+++|++|++++ |.....+| ..+..+++|++|+|++| .+..+|.. +.++|++|++++
T Consensus 764 ~-L~~lp~-~l--~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~ 836 (876)
T 4ecn_A 764 C-FSSFPT-QP--LNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIAD 836 (876)
T ss_dssp C-CSSCCC-GG--GGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCS
T ss_pred C-CCccch-hh--hcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCC
Confidence 3 777876 55 6889999999987 54344566 78899999999999996 55888876 457999999999
Q ss_pred Ccch
Q 010426 481 CPKL 484 (511)
Q Consensus 481 c~~l 484 (511)
|+-.
T Consensus 837 N~l~ 840 (876)
T 4ecn_A 837 NPNI 840 (876)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9743
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=4.7e-27 Score=247.78 Aligned_cols=431 Identities=19% Similarity=0.153 Sum_probs=262.8
Q ss_pred eccEeecCCCccccCC-ccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCCc-ccCcCCCccCC
Q 010426 6 HLRYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALS 82 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~ 82 (511)
++++|+|++|.|+.+| .+|..+++|++|+|++| .+..+| .+|+++++|++|++++|. ++.+|.+ |+.+++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence 6899999999999986 56999999999999999 777776 468999999999999999 8888865 89999999999
Q ss_pred ceeeecCCCcc-CccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhh
Q 010426 83 NFIVGTDTKSS-GLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREEL 161 (511)
Q Consensus 83 ~~~~~~~~~~~-~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (511)
++++.+...+. .+..+.+|+.+ .+..+.+.... .+..+..+++|+.|++++|....... .
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L--~Ls~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~------------~ 191 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKEL--NVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQSIYC------------T 191 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEE--ECCSSCCCCCC-----CCGGGGGCTTCCEEECCSSCCCEECG------------G
T ss_pred CCCCcCCCCChhhhhcCcccCee--ccccCccccCC-----CchhhccchhhhhhcccCcccccccc------------c
Confidence 98887766532 35666666654 33333333221 12335667889999998872211110 0
Q ss_pred hhcCCCCCC-CCceEEEecCCCccCCcccCC-----------------------CCCCCccEEEEecCCCC--CCCC---
Q 010426 162 VLGKLKPCT-SIKKLTIKGYGGKKIPSWIAD-----------------------PSFSKMEVLGLENCENC--TSLP--- 212 (511)
Q Consensus 162 ~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~-----------------------~~~~~L~~L~l~~~~~~--~~~~--- 212 (511)
.+..+...+ ....++++.+....++..... ..+..++...+...... ..+.
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 000000000 112223333322222111110 01222333222211100 0000
Q ss_pred -----------------------------CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhh
Q 010426 213 -----------------------------SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDT 263 (511)
Q Consensus 213 -----------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 263 (511)
.+..+.+++.+.+.++..... ..+.....++.|++.++...
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~----- 341 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-----KDFSYNFGWQHLELVNCKFG----- 341 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-----GGGGSCCCCSEEEEESCEES-----
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-----cccccchhhhhhhccccccc-----
Confidence 112223333333333221111 11122344555555444211
Q ss_pred hccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccC----CCCCcCeEeeccCccccccccc
Q 010426 264 KFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRK----LPSSLKWLEIENCEKLESLPND 339 (511)
Q Consensus 264 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~L~~L~l~~~~~l~~l~~~ 339 (511)
......++.|+.+.+..+ .....+....+++|+.++++.+. +....... ...+++.+++..+ ....++..
T Consensus 342 ---~~~~~~l~~L~~l~l~~n-~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~ 415 (635)
T 4g8a_A 342 ---QFPTLKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSN 415 (635)
T ss_dssp ---SCCCCBCTTCCEEEEESC-CSCCBCCCCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSC-SEEEECSC
T ss_pred ---CcCcccchhhhhcccccc-cCCCCcccccccccccchhhccc-cccccccccchhhhhhhhhhhcccc-cccccccc
Confidence 111234556666666653 22324444467778888887743 32222111 1147888888877 34445567
Q ss_pred ccCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccc
Q 010426 340 MHELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEM 417 (511)
Q Consensus 340 ~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 417 (511)
+..+++|+.+++.++......+. ...+++++.+++ +.+.+....+..+..++.|+.|++++ +.. ...+....+
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l---s~n~l~~~~~~~~~~~~~L~~L~Ls~-N~~-~~~~~~~~~ 490 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAFNGIFNGLSSLEVLKMAG-NSF-QENFLPDIF 490 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC---TTSCCEECCTTTTTTCTTCCEEECTT-CEE-GGGEECSCC
T ss_pred ccccccccchhhhhccccccccccccccccccccccc---cccccccccccccccchhhhhhhhhh-ccc-ccccCchhh
Confidence 78889999999988844333322 245678888888 67777777777788999999999999 433 343332133
Q ss_pred cccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcccEEEecCCc
Q 010426 418 GMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSILWLNIWSCP 482 (511)
Q Consensus 418 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 482 (511)
..+++|++|++++|. ++.++...+..+++|++|+|++ ++++.++...+ .++|++|+++++.
T Consensus 491 --~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 491 --TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp --TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred --hhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCc
Confidence 678999999999998 9988768899999999999999 57888766433 4799999999864
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=4.4e-27 Score=237.76 Aligned_cols=379 Identities=17% Similarity=0.132 Sum_probs=214.9
Q ss_pred cEeecCCCccccCCccccccccccEEeccCccccccc-cccccCcCccceEEecCcccccccC-CcccCcCCCccCCcee
Q 010426 8 RYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEIP-FGMKELKNLQALSNFI 85 (511)
Q Consensus 8 r~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~~~~ 85 (511)
+.++.+++.+..+|. +. ++|++|+|++| .+..+ |..++++++|++|++++|.....++ ..++.+++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 345555666666665 22 56666666666 33333 4556666666666666665222443 3366666666666554
Q ss_pred eecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhh--
Q 010426 86 VGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVL-- 163 (511)
Q Consensus 86 ~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 163 (511)
+.+... .+..+..+++|+.|++++|. ......
T Consensus 89 n~l~~~-------------------------------~~~~~~~l~~L~~L~L~~n~---------------l~~~~~~~ 122 (455)
T 3v47_A 89 NQFLQL-------------------------------ETGAFNGLANLEVLTLTQCN---------------LDGAVLSG 122 (455)
T ss_dssp CTTCEE-------------------------------CTTTTTTCTTCCEEECTTSC---------------CBTHHHHS
T ss_pred CccCcc-------------------------------ChhhccCcccCCEEeCCCCC---------------CCccccCc
Confidence 433211 00113334455555555541 000011
Q ss_pred cCCCCCCCCceEEEecCCCccC-Ccc-cCCCCCCCccEEEEecCCCCCCCC-CCCCC--CCccEEEecCCccceEec--c
Q 010426 164 GKLKPCTSIKKLTIKGYGGKKI-PSW-IADPSFSKMEVLGLENCENCTSLP-SFGLL--SSLKHLTVKGLRKLKSMG--Y 236 (511)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l--~~L~~L~l~~~~~~~~~~--~ 236 (511)
..+..+++|++|+++++..... |.. +. .+++|++|++++|......+ .+..+ ++|+.|++++|....... +
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFL--NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp STTTTCTTCCEEECCSSBCCSCCCCGGGG--GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT
T ss_pred ccccCcccCCEEECCCCccCccCcccccC--CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc
Confidence 2255566777777776666554 322 22 46777777777776433333 34333 567777776665221111 0
Q ss_pred CC---CCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCccee
Q 010426 237 GE---HCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFI 313 (511)
Q Consensus 237 ~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~ 313 (511)
+. .....+++|+.|+++++.........+.. ....++|+.++++++......+....++.+. ..
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-----------~~ 267 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD--AIAGTKIQSLILSNSYNMGSSFGHTNFKDPD-----------NF 267 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH--HTTTCCEEEEECTTCTTTSCCTTCCSSCCCC-----------TT
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhc--cccccceeeEeeccccccccccchhhhccCc-----------cc
Confidence 00 01122355666666655422211100100 1123567777776653322111111111000 00
Q ss_pred cccCC-CCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEecccccccchhhhhh
Q 010426 314 ARRKL-PSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAIIHWGL 390 (511)
Q Consensus 314 ~~~~~-~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~ 390 (511)
..... .++|++|++++|.....+|..+..+++|++|++++| .++..+. ...+++|++|++ +.+.++.+.+..+
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L---s~N~l~~~~~~~~ 343 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNL---SQNFLGSIDSRMF 343 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC---CSSCCCEECGGGG
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEEC---CCCccCCcChhHh
Confidence 00111 148999999998666566777889999999999999 5665543 256788999999 4556677766778
Q ss_pred ccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCC
Q 010426 391 HRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNL 461 (511)
Q Consensus 391 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l 461 (511)
..+++|++|++++ + . +..++...+ ..+++|++|++++|. ++.++...+..+++|++|++++|+--
T Consensus 344 ~~l~~L~~L~Ls~-N-~-l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 344 ENLDKLEVLDLSY-N-H-IRALGDQSF--LGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTCTTCCEEECCS-S-C-CCEECTTTT--TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCcccCCEEECCC-C-c-ccccChhhc--cccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcc
Confidence 8899999999998 3 3 666643134 668899999999988 88888667788999999999986433
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=9.1e-27 Score=235.86 Aligned_cols=296 Identities=22% Similarity=0.280 Sum_probs=168.0
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
..+++||+|++++|.+..+|. +..+++|++|++++| .+..++. ++++++|++|++++|. +..++. ++.+++|++|
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEE
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEE
Confidence 468899999999999998876 999999999999999 7777776 9999999999999998 877764 8999999999
Q ss_pred CceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhh
Q 010426 82 SNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREEL 161 (511)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (511)
+++++.+... ..+..+ ++|+.|+++.+ . .
T Consensus 140 ~l~~n~l~~~-~~~~~l--------------------------------~~L~~L~l~~~------~------------~ 168 (466)
T 1o6v_A 140 ELSSNTISDI-SALSGL--------------------------------TSLQQLSFGNQ------V------------T 168 (466)
T ss_dssp EEEEEEECCC-GGGTTC--------------------------------TTCSEEEEEES------C------------C
T ss_pred ECCCCccCCC-hhhccC--------------------------------CcccEeecCCc------c------------c
Confidence 9988876544 223333 34444444321 0 0
Q ss_pred hhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCC
Q 010426 162 VLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCS 241 (511)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 241 (511)
....+..+++|+.|+++++....++. +. .+++|+.|++++|. +...+.++.+++|++|++++|. +..++ .+
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~----~l 239 (466)
T 1o6v_A 169 DLKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQ-LKDIG----TL 239 (466)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCCCG----GG
T ss_pred CchhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCc-ccccccccccCCCCEEECCCCC-cccch----hh
Confidence 00113344555555555555444432 11 35556666665554 2333334455566666665554 22221 22
Q ss_pred CCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCC
Q 010426 242 NPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSS 321 (511)
Q Consensus 242 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 321 (511)
..+++|+.|++.++....... ...+++|++|++++| .+.+..+...+++|+.|++++|. ++.++.....++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~ 310 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDISPISNLKN 310 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCCGGGGGCTT
T ss_pred hcCCCCCEEECCCCccccchh-------hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCc-ccCchhhcCCCC
Confidence 335566666666543211111 346778888888875 44422223345555555555532 222221111125
Q ss_pred cCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEE
Q 010426 322 LKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEI 374 (511)
Q Consensus 322 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 374 (511)
|+.|++++| .++.++. +..+++|++|++++| .++..+....+++|+.|++
T Consensus 311 L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 311 LTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSA 360 (466)
T ss_dssp CSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred CCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeC
Confidence 555555555 2222222 344455555555554 3333332233344444444
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3e-27 Score=245.28 Aligned_cols=405 Identities=18% Similarity=0.186 Sum_probs=257.8
Q ss_pred eeccEeecCCCccccCC-ccccccccccEEeccCccccccc-cccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 5 KHLRYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
++|++|++++|.|..++ .+|..+++|++|++++| .+..+ |..++++++|++|++++|. +..+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEE
Confidence 57999999999999886 67999999999999999 55555 6779999999999999999 8899877 899999999
Q ss_pred ceeeecCCCc--cCccccccccccCceEEEccccCCCChhhhHHhcccccccc--ceeEEeeecc--cccCCCCCCCcch
Q 010426 83 NFIVGTDTKS--SGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYL--EALSLQWRSQ--LQWGSQFDDSRNE 156 (511)
Q Consensus 83 ~~~~~~~~~~--~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~~~~ 156 (511)
++++.+...+ ..+..+.+|+.+ .+..+.+.. ..+..+.+| +.|++++|.. ....
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L--~L~~n~l~~---------~~~~~l~~L~L~~L~L~~n~l~~~~~~--------- 187 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFL--GLSAAKFRQ---------LDLLPVAHLHLSCILLDLVSYHIKGGE--------- 187 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEE--EEECSBCCT---------TTTGGGTTSCEEEEEEEESSCCCCSSS---------
T ss_pred CCCCCccccCchHhhcccCcccEE--ecCCCcccc---------CchhhhhhceeeEEEeecccccccccC---------
Confidence 9999887642 456677777755 444444332 123334445 9999998832 1100
Q ss_pred hhhhhhhcCCCCCC-CCceEEEecCCCccCCcccCCCCCCCccEEEEecC----------------------------CC
Q 010426 157 SREELVLGKLKPCT-SIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENC----------------------------EN 207 (511)
Q Consensus 157 ~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------------------------~~ 207 (511)
...+..+. ..-.++++.+.............+++|+.+++++| ..
T Consensus 188 ------~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 188 ------TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp ------CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred ------cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 01111111 00122333333221111111113444555555544 21
Q ss_pred CC----CCCCCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccc---cccCCCcCeee
Q 010426 208 CT----SLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENG---VAGFSSLRELS 280 (511)
Q Consensus 208 ~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~~~~~~L~~L~ 280 (511)
.. .++.....++|++|++++|.....++..... ...++|+.|.+.++..... . ++... .....+|++|+
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~-~~~~~L~~L~~~~~~~~~~-~--~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT-YSETALKSLMIEHVKNQVF-L--FSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC-CCSCSCCEEEEEEEEECCC-S--SCHHHHHHHHHTCCCSEEE
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh-cccccchheehhhccccee-e--cChhhhhhhhccCcceEEE
Confidence 10 0011112247778888776533233210000 0014555555544321110 0 00000 01125699999
Q ss_pred eccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCcccccc---cccccCCCCcCeEEecCCC
Q 010426 281 ILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESL---PNDMHELNYLQHLCINRCP 355 (511)
Q Consensus 281 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l---~~~~~~~~~L~~L~l~~~~ 355 (511)
++++. +........+++|++|++++|. ++...+..+. ++|++|++++| .++.+ |..+..+++|++|++++|
T Consensus 338 l~~n~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N- 413 (562)
T 3a79_B 338 ISDTP-FIHMVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN- 413 (562)
T ss_dssp EESSC-CCCCCCCSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-
T ss_pred ccCCC-cccccCccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-
Confidence 99964 4322222578999999999964 4432222222 59999999999 55544 456889999999999999
Q ss_pred CCcc-cCCC--CCCCCCceEEEEecccccccchhhhhhccC-CcccEEEEecCCCCCccccCcccccccCCCccceEeec
Q 010426 356 SIVR-FPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRL-TSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNII 431 (511)
Q Consensus 356 ~l~~-~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 431 (511)
.++. ++.. ..+++|++|+++ .+.+++..+ ..+ ++|+.|++++ + . ++.+|. .. ..+++|++|+++
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~---~~l~~~L~~L~L~~-N-~-l~~ip~-~~--~~l~~L~~L~L~ 481 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLS---SNMLTGSVF---RCLPPKVKVLDLHN-N-R-IMSIPK-DV--THLQALQELNVA 481 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECC---SSCCCGGGG---SSCCTTCSEEECCS-S-C-CCCCCT-TT--TSSCCCSEEECC
T ss_pred cCCCccChhhhcCcccCCEEECC---CCCCCcchh---hhhcCcCCEEECCC-C-c-CcccCh-hh--cCCCCCCEEECC
Confidence 4554 6543 567899999995 455654433 333 7999999999 3 4 888886 55 478999999999
Q ss_pred CCcCCcccCccccCCCCCcCEEeEecCCC
Q 010426 432 GFRNLKMLSSKGFQSLTSLEFLWIDDCPN 460 (511)
Q Consensus 432 ~~~~l~~l~~~~~~~l~~L~~L~l~~c~~ 460 (511)
+|. ++.+|...+..+++|+.|++++|+-
T Consensus 482 ~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 482 SNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SSC-CCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCC-CCCCCHHHHhcCCCCCEEEecCCCc
Confidence 998 9999855589999999999999753
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.7e-26 Score=230.68 Aligned_cols=263 Identities=14% Similarity=0.103 Sum_probs=165.9
Q ss_pred CceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
++++|++|++++|.|..+| +++.+++|++|++++| .+..+| ++.+++|++|++++|. +..++ ++.+++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEE
Confidence 4677888888888887776 5777888888888888 566664 7778888888888887 66654 77777888777
Q ss_pred ceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhh
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELV 162 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (511)
++++.+... .+..+++|+.|++++|... .
T Consensus 113 L~~N~l~~l----------------------------------~~~~l~~L~~L~l~~N~l~---------------~-- 141 (457)
T 3bz5_A 113 CDTNKLTKL----------------------------------DVSQNPLLTYLNCARNTLT---------------E-- 141 (457)
T ss_dssp CCSSCCSCC----------------------------------CCTTCTTCCEEECTTSCCS---------------C--
T ss_pred CCCCcCCee----------------------------------cCCCCCcCCEEECCCCccc---------------e--
Confidence 655543221 0233456777777666100 0
Q ss_pred hcCCCCCCCCceEEEecCC-CccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCC
Q 010426 163 LGKLKPCTSIKKLTIKGYG-GKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCS 241 (511)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 241 (511)
+ .+..+++|++|+++++. ...++ +. .+++|+.|++++|. +..++ ++.+++|+.|++++|. +..++ +
T Consensus 142 l-~l~~l~~L~~L~l~~n~~~~~~~--~~--~l~~L~~L~ls~n~-l~~l~-l~~l~~L~~L~l~~N~-l~~~~-----l 208 (457)
T 3bz5_A 142 I-DVSHNTQLTELDCHLNKKITKLD--VT--PQTQLTTLDCSFNK-ITELD-VSQNKLLNRLNCDTNN-ITKLD-----L 208 (457)
T ss_dssp C-CCTTCTTCCEEECTTCSCCCCCC--CT--TCTTCCEEECCSSC-CCCCC-CTTCTTCCEEECCSSC-CSCCC-----C
T ss_pred e-ccccCCcCCEEECCCCCcccccc--cc--cCCcCCEEECCCCc-cceec-cccCCCCCEEECcCCc-CCeec-----c
Confidence 0 24556677777777763 33331 22 46778888887775 44455 6677778888877765 22222 3
Q ss_pred CCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCC
Q 010426 242 NPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSS 321 (511)
Q Consensus 242 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 321 (511)
..+++|+.|++.++.- ..+. ...+++|+.|+++++ .++ .++...+++|+.|+++.+ +
T Consensus 209 ~~l~~L~~L~Ls~N~l-~~ip-------~~~l~~L~~L~l~~N-~l~-~~~~~~l~~L~~L~l~~n-------------~ 265 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKL-TEID-------VTPLTQLTYFDCSVN-PLT-ELDVSTLSKLTTLHCIQT-------------D 265 (457)
T ss_dssp TTCTTCSEEECCSSCC-SCCC-------CTTCTTCSEEECCSS-CCS-CCCCTTCTTCCEEECTTC-------------C
T ss_pred ccCCCCCEEECcCCcc-cccC-------ccccCCCCEEEeeCC-cCC-CcCHHHCCCCCEEeccCC-------------C
Confidence 3467777777776532 1111 345667777777763 455 345555666666655442 5
Q ss_pred cCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccC
Q 010426 322 LKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFP 361 (511)
Q Consensus 322 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 361 (511)
|+.+++++|.....+| +..+++|++|++++|..+..++
T Consensus 266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 6667777776665555 4567888888888886555444
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.8e-25 Score=217.56 Aligned_cols=236 Identities=20% Similarity=0.171 Sum_probs=128.2
Q ss_pred CCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCCCCCCC
Q 010426 169 CTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLE 248 (511)
Q Consensus 169 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 248 (511)
+++|++|+++++....++. +. .+++|+.|++++|.....++.+..+++|++|++++|....... +..+++|+
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~--~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~ 180 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-----IANLTDLY 180 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GT--TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCS
T ss_pred CCcCCEEECcCCcccCchh-hc--cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-----hccCCCCC
Confidence 3445555555554444443 22 4566666666666555555556666666666666654211111 11233333
Q ss_pred eEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeec
Q 010426 249 TLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIE 328 (511)
Q Consensus 249 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 328 (511)
.|++.++. +.+..+...+++|+.+++++| .+..+......++|++|+++
T Consensus 181 ~L~l~~n~------------------------------l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 181 SLSLNYNQ------------------------------IEDISPLASLTSLHYFTAYVN-QITDITPVANMTRLNSLKIG 229 (347)
T ss_dssp EEECTTSC------------------------------CCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECC
T ss_pred EEEccCCc------------------------------ccccccccCCCccceeecccC-CCCCCchhhcCCcCCEEEcc
Confidence 33333322 111111223344444444443 22222211112366777776
Q ss_pred cCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCC
Q 010426 329 NCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDE 408 (511)
Q Consensus 329 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 408 (511)
+| .++.++. +..+++|++|++++| .++.++....+++|++|+++ .+.++++. .+..+++|+.|++++ |.
T Consensus 230 ~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~---~n~l~~~~--~~~~l~~L~~L~L~~-n~-- 298 (347)
T 4fmz_A 230 NN-KITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVG---SNQISDIS--VLNNLSQLNSLFLNN-NQ-- 298 (347)
T ss_dssp SS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECC---SSCCCCCG--GGGGCTTCSEEECCS-SC--
T ss_pred CC-ccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEcc---CCccCCCh--hhcCCCCCCEEECcC-Cc--
Confidence 66 4444444 667777777777777 55555555566777777774 33444442 466777888888887 33
Q ss_pred ccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 409 AECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 409 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
+...+...+ ..+++|++|++++|+ ++.++ .+..+++|++|++++|+
T Consensus 299 l~~~~~~~l--~~l~~L~~L~L~~n~-l~~~~--~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 299 LGNEDMEVI--GGLTNLTTLFLSQNH-ITDIR--PLASLSKMDSADFANQV 344 (347)
T ss_dssp CCGGGHHHH--HTCTTCSEEECCSSS-CCCCG--GGGGCTTCSEESSSCC-
T ss_pred CCCcChhHh--hccccCCEEEccCCc-ccccc--Chhhhhccceeehhhhc
Confidence 444443122 457788888888887 77765 26778888888888753
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-25 Score=219.83 Aligned_cols=305 Identities=16% Similarity=0.159 Sum_probs=170.2
Q ss_pred ccccccEEeccCcccccccccc-ccCcCccceEEecCcccccccCC-cccCcCCCccCCceeeecCCCccCccccccccc
Q 010426 26 SLINLQVLLLRDCYYLLKLPSK-LRNLINLRHLDIMGAYLIKEIPF-GMKELKNLQALSNFIVGTDTKSSGLKDLKSLAF 103 (511)
Q Consensus 26 ~l~~L~~L~L~~n~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 103 (511)
.++++++|++++| .+..+|.. +..+++|++|++++|. +..++. .++.+++|++|+++++.+...
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 108 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYL------------ 108 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCC------------
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcC------------
Confidence 4678888888888 77777755 5788888888888888 666664 477777777776554432111
Q ss_pred cCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCc
Q 010426 104 VGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGK 183 (511)
Q Consensus 104 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 183 (511)
....+..+++|++|+++++.+.
T Consensus 109 ----------------------------------------------------------~~~~~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 109 ----------------------------------------------------------PPHVFQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp ----------------------------------------------------------CTTTTTTCTTCCEEECCSSCCC
T ss_pred ----------------------------------------------------------CHHHhcCCCCCCEEECCCCccC
Confidence 0012333456666666666666
Q ss_pred cCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhh
Q 010426 184 KIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWD 262 (511)
Q Consensus 184 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 262 (511)
.+|..+.. .+++|++|++++|......+ .++.+++|++|++++|.. ..++
T Consensus 131 ~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--------------------------- 181 (390)
T 3o6n_A 131 SLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--------------------------- 181 (390)
T ss_dssp CCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCC---------------------------
T ss_pred cCCHHHhc-CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccc---------------------------
Confidence 66554321 46777777777776433333 466677777777776551 1111
Q ss_pred hhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccC
Q 010426 263 TKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHE 342 (511)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 342 (511)
...+++|+.++++++ .+.. + ...++|+.|++++| .+..++.. ..++|+.|++++|
T Consensus 182 -------~~~l~~L~~L~l~~n-~l~~-~--~~~~~L~~L~l~~n-~l~~~~~~-~~~~L~~L~l~~n------------ 236 (390)
T 3o6n_A 182 -------LSLIPSLFHANVSYN-LLST-L--AIPIAVEELDASHN-SINVVRGP-VNVELTILKLQHN------------ 236 (390)
T ss_dssp -------GGGCTTCSEEECCSS-CCSE-E--ECCSSCSEEECCSS-CCCEEECC-CCSSCCEEECCSS------------
T ss_pred -------cccccccceeecccc-cccc-c--CCCCcceEEECCCC-eeeecccc-ccccccEEECCCC------------
Confidence 123455555555543 2220 1 01123444444442 23333221 1234555555555
Q ss_pred CCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCC
Q 010426 343 LNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLP 422 (511)
Q Consensus 343 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 422 (511)
.++..+....+++|++|++ +.+.++.+.+..+..+++|+.|++++ + . ++.++. .. ..+
T Consensus 237 -------------~l~~~~~l~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~L~~-n-~-l~~~~~-~~--~~l 294 (390)
T 3o6n_A 237 -------------NLTDTAWLLNYPGLVEVDL---SYNELEKIMYHPFVKMQRLERLYISN-N-R-LVALNL-YG--QPI 294 (390)
T ss_dssp -------------CCCCCGGGGGCTTCSEEEC---CSSCCCEEESGGGTTCSSCCEEECCS-S-C-CCEEEC-SS--SCC
T ss_pred -------------CCcccHHHcCCCCccEEEC---CCCcCCCcChhHccccccCCEEECCC-C-c-CcccCc-cc--CCC
Confidence 2333332333445555555 23334444444566667777777776 2 2 555554 22 456
Q ss_pred CccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCCCCcccEEEecCCc
Q 010426 423 TSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLPSSILWLNIWSCP 482 (511)
Q Consensus 423 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 482 (511)
++|++|++++|. ++.++ ..+..+++|++|++++| .++.++... .++|++|++++++
T Consensus 295 ~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 295 PTLKVLDLSHNH-LLHVE-RNQPQFDRLENLYLDHN-SIVTLKLST-HHTLKNLTLSHND 350 (390)
T ss_dssp TTCCEEECCSSC-CCCCG-GGHHHHTTCSEEECCSS-CCCCCCCCT-TCCCSEEECCSSC
T ss_pred CCCCEEECCCCc-ceecC-ccccccCcCCEEECCCC-ccceeCchh-hccCCEEEcCCCC
Confidence 777777777776 66665 44566777777777774 455555433 3677777777754
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.8e-25 Score=222.80 Aligned_cols=358 Identities=16% Similarity=0.116 Sum_probs=229.6
Q ss_pred ccEEeccCccccccccccccCcCccceEEecCccccccc-CCcccCcCCCccCCceeeecCCCccCccccccccccCceE
Q 010426 30 LQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEI-PFGMKELKNLQALSNFIVGTDTKSSGLKDLKSLAFVGGEL 108 (511)
Q Consensus 30 L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~~l 108 (511)
-+.++.+++ .+..+|. +. ++|++|++++|. +..+ |..++.+++|++|+++.+.+... .
T Consensus 12 ~~~~~c~~~-~l~~lp~-l~--~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~-i--------------- 70 (455)
T 3v47_A 12 GYNAICINR-GLHQVPE-LP--AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLV-I--------------- 70 (455)
T ss_dssp TTEEECCSS-CCSSCCC-CC--TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCE-E---------------
T ss_pred ccccCcCCC-CcccCCC-CC--CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccce-E---------------
Confidence 456777777 7888887 33 789999999999 7666 56699999999999776644211 0
Q ss_pred EEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCcc-CCc
Q 010426 109 SISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKK-IPS 187 (511)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~ 187 (511)
....+..+++|+.|++++|.. .......+..+++|++|+++++.... .+.
T Consensus 71 --------------~~~~~~~l~~L~~L~Ls~n~l---------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 121 (455)
T 3v47_A 71 --------------RNNTFRGLSSLIILKLDYNQF---------------LQLETGAFNGLANLEVLTLTQCNLDGAVLS 121 (455)
T ss_dssp --------------CTTTTTTCTTCCEEECTTCTT---------------CEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred --------------CcccccccccCCEEeCCCCcc---------------CccChhhccCcccCCEEeCCCCCCCccccC
Confidence 001244556788888877711 11123356667888888888887654 222
Q ss_pred ccCCCCCCCccEEEEecCCCCCCCCC--CCCCCCccEEEecCCccceEeccCCCCCCCC--CCCCeEEcCCCCCchhhhh
Q 010426 188 WIADPSFSKMEVLGLENCENCTSLPS--FGLLSSLKHLTVKGLRKLKSMGYGEHCSNPF--QSLETLWFEDLPEWEYWDT 263 (511)
Q Consensus 188 ~~~~~~~~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~ 263 (511)
......+++|++|++++|......|. +..+++|++|++++|......+ ..+..+ .+|+.+++.++.
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~~~L~~L~l~~n~------- 191 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE---EDLLNFQGKHFTLLRLSSIT------- 191 (455)
T ss_dssp SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT---TTSGGGTTCEEEEEECTTCB-------
T ss_pred cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh---hhhhccccccccccccccCc-------
Confidence 21112578888888888875444442 6778888888888776322211 001111 334444444332
Q ss_pred hccccccccCCCcCeeeeccCCCcCcCCC----------CCCCCCCCEEEEEccCCcceeccc----CCCCCcCeEeecc
Q 010426 264 KFEENGVAGFSSLRELSILNCSKFSGILP----------LCKNSQLESLCIRYCDSLTFIARR----KLPSSLKWLEIEN 329 (511)
Q Consensus 264 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----------~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~ 329 (511)
+.+..+ ...+++|+.|++++|......+.. ...++|+.+++++
T Consensus 192 -----------------------l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 192 -----------------------LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp -----------------------CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred -----------------------ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 111100 012345555555554322111110 0013566666666
Q ss_pred Ccccccc----------cccc--cCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEecccccccchhhhhhccCCc
Q 010426 330 CEKLESL----------PNDM--HELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTS 395 (511)
Q Consensus 330 ~~~l~~l----------~~~~--~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~ 395 (511)
|...... +..+ ...++|++|++++| .++.... ...+++|++|++ +.+.++...+..+..+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTL---AQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEEC---TTSCCCEECTTTTTTCTT
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCc-cccccchhhcccCCCCCEEEC---CCCcccccChhHhcCccc
Confidence 5322210 0111 23478999999999 4555433 266799999999 667777777778899999
Q ss_pred ccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcc
Q 010426 396 LRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSI 473 (511)
Q Consensus 396 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L 473 (511)
|++|++++ + . +..++...+ ..+++|++|++++|. ++.++...+..+++|++|++++ ++++.+|...+ .++|
T Consensus 325 L~~L~Ls~-N-~-l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 325 LLKLNLSQ-N-F-LGSIDSRMF--ENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp CCEEECCS-S-C-CCEECGGGG--TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred CCEEECCC-C-c-cCCcChhHh--cCcccCCEEECCCCc-ccccChhhccccccccEEECCC-CccccCCHhHhccCCcc
Confidence 99999999 3 3 666654233 678999999999998 8888658899999999999999 57888876433 5899
Q ss_pred cEEEecCC
Q 010426 474 LWLNIWSC 481 (511)
Q Consensus 474 ~~L~l~~c 481 (511)
++|+++++
T Consensus 398 ~~L~l~~N 405 (455)
T 3v47_A 398 QKIWLHTN 405 (455)
T ss_dssp CEEECCSS
T ss_pred cEEEccCC
Confidence 99999873
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=6.1e-25 Score=220.64 Aligned_cols=371 Identities=20% Similarity=0.210 Sum_probs=216.4
Q ss_pred CccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCC-------------ccCCceeee
Q 010426 21 PKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNL-------------QALSNFIVG 87 (511)
Q Consensus 21 ~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L-------------~~L~~~~~~ 87 (511)
|+.+ ...+|++|++++| .+..+|++++++++|++|++++|.....+|.+++++++| ++|+++++.
T Consensus 5 p~~~-~~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccc-ccccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 3434 4689999999999 669999999999999999999999556899999998876 666666655
Q ss_pred cCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCC
Q 010426 88 TDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLK 167 (511)
Q Consensus 88 ~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 167 (511)
....|... ..++.+ .+..+.+.... ....+|+.|++++|. +..+.
T Consensus 83 l~~lp~~~---~~L~~L--~l~~n~l~~lp----------~~~~~L~~L~l~~n~--------------------l~~l~ 127 (454)
T 1jl5_A 83 LSSLPELP---PHLESL--VASCNSLTELP----------ELPQSLKSLLVDNNN--------------------LKALS 127 (454)
T ss_dssp CSCCCSCC---TTCSEE--ECCSSCCSSCC----------CCCTTCCEEECCSSC--------------------CSCCC
T ss_pred cccCCCCc---CCCCEE--EccCCcCCccc----------cccCCCcEEECCCCc--------------------cCccc
Confidence 54432222 222222 12222222211 112577777777661 11121
Q ss_pred CC-CCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCCCCC
Q 010426 168 PC-TSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQS 246 (511)
Q Consensus 168 ~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 246 (511)
.. ++|++|+++++....+|. +. .+++|++|++++|. +..+|.. .++|++|++++|. +..++ .+..+++
T Consensus 128 ~~~~~L~~L~L~~n~l~~lp~-~~--~l~~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~-l~~l~----~~~~l~~ 196 (454)
T 1jl5_A 128 DLPPLLEYLGVSNNQLEKLPE-LQ--NSSFLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQ-LEELP----ELQNLPF 196 (454)
T ss_dssp SCCTTCCEEECCSSCCSSCCC-CT--TCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC-CSSCC----CCTTCTT
T ss_pred CCCCCCCEEECcCCCCCCCcc-cC--CCCCCCEEECCCCc-CcccCCC--cccccEEECcCCc-CCcCc----cccCCCC
Confidence 22 578888888888877773 33 67888888888886 4445532 3588888888875 33332 3556888
Q ss_pred CCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCC-CCCCCCCCEEEEEccCCcceecccCCCCCcCeE
Q 010426 247 LETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILP-LCKNSQLESLCIRYCDSLTFIARRKLPSSLKWL 325 (511)
Q Consensus 247 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 325 (511)
|+.|++.++... .+. ...++|++|++++| .++ .+| ...+++|+.|++++| .++.++. .+++|++|
T Consensus 197 L~~L~l~~N~l~-~l~--------~~~~~L~~L~l~~n-~l~-~lp~~~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L 262 (454)
T 1jl5_A 197 LTAIYADNNSLK-KLP--------DLPLSLESIVAGNN-ILE-ELPELQNLPFLTTIYADNN-LLKTLPD--LPPSLEAL 262 (454)
T ss_dssp CCEEECCSSCCS-SCC--------CCCTTCCEEECCSS-CCS-SCCCCTTCTTCCEEECCSS-CCSSCCS--CCTTCCEE
T ss_pred CCEEECCCCcCC-cCC--------CCcCcccEEECcCC-cCC-cccccCCCCCCCEEECCCC-cCCcccc--cccccCEE
Confidence 888888876421 111 23368889999886 555 444 346888999999885 4555442 33689999
Q ss_pred eeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccC-CcccEEEEecC
Q 010426 326 EIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRL-TSLRRLWIEGC 404 (511)
Q Consensus 326 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l-~~L~~L~l~~~ 404 (511)
++++| .++.+|.. +++|++|++++| .++.++. .+++|+.|+++ .+.++.+. .+ ++|+.|++++
T Consensus 263 ~l~~N-~l~~l~~~---~~~L~~L~ls~N-~l~~l~~--~~~~L~~L~l~---~N~l~~i~-----~~~~~L~~L~Ls~- 326 (454)
T 1jl5_A 263 NVRDN-YLTDLPEL---PQSLTFLDVSEN-IFSGLSE--LPPNLYYLNAS---SNEIRSLC-----DLPPSLEELNVSN- 326 (454)
T ss_dssp ECCSS-CCSCCCCC---CTTCCEEECCSS-CCSEESC--CCTTCCEEECC---SSCCSEEC-----CCCTTCCEEECCS-
T ss_pred ECCCC-cccccCcc---cCcCCEEECcCC-ccCcccC--cCCcCCEEECc---CCcCCccc-----CCcCcCCEEECCC-
Confidence 99988 55566653 478999999998 5666543 35789999994 44554422 23 5899999999
Q ss_pred CCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCccc---CCCC-------------
Q 010426 405 DDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSF---PEAG------------- 468 (511)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~---~~~~------------- 468 (511)
+. +..+|. .+++|++|++++|. ++.+|. .+++|++|++++| .++.+ |..-
T Consensus 327 -N~-l~~lp~------~~~~L~~L~L~~N~-l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 327 -NK-LIELPA------LPPRLERLIASFNH-LAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVP 392 (454)
T ss_dssp -SC-CSCCCC------CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC------
T ss_pred -Cc-cccccc------cCCcCCEEECCCCc-cccccc----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccc
Confidence 34 677774 36899999999998 888883 5789999999995 55553 3210
Q ss_pred -CCCcccEEEecCCcc
Q 010426 469 -LPSSILWLNIWSCPK 483 (511)
Q Consensus 469 -~~~~L~~L~l~~c~~ 483 (511)
.+++|++|++++++-
T Consensus 393 ~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 393 ELPQNLKQLHVETNPL 408 (454)
T ss_dssp ----------------
T ss_pred cccCcCCEEECCCCcC
Confidence 126788888888654
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2e-24 Score=217.04 Aligned_cols=316 Identities=17% Similarity=0.134 Sum_probs=182.7
Q ss_pred CccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCceeeecCCCccCcccccc
Q 010426 21 PKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFIVGTDTKSSGLKDLKS 100 (511)
Q Consensus 21 ~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~ 100 (511)
+..++.+++|++|++++| .+..+| .++.+++|++|++++|. +..+| ++.+++|++|+++++.+...
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~--------- 100 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLTNL--------- 100 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCC---------
T ss_pred ccChhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCCCcee---------
Confidence 345777888888888888 666676 48888888888888888 76664 77778888777655543211
Q ss_pred ccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecC
Q 010426 101 LAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGY 180 (511)
Q Consensus 101 L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 180 (511)
.+..+++|+.|++++|
T Consensus 101 -------------------------~~~~l~~L~~L~L~~N--------------------------------------- 116 (457)
T 3bz5_A 101 -------------------------DVTPLTKLTYLNCDTN--------------------------------------- 116 (457)
T ss_dssp -------------------------CCTTCTTCCEEECCSS---------------------------------------
T ss_pred -------------------------ecCCCCcCCEEECCCC---------------------------------------
Confidence 0222335555555544
Q ss_pred CCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchh
Q 010426 181 GGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEY 260 (511)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 260 (511)
....++ +. .+++|++|++++|.. ..+ .++.+++|++|++++|..+..+++ ..+++|+.|++.++. ++.
T Consensus 117 ~l~~l~--~~--~l~~L~~L~l~~N~l-~~l-~l~~l~~L~~L~l~~n~~~~~~~~-----~~l~~L~~L~ls~n~-l~~ 184 (457)
T 3bz5_A 117 KLTKLD--VS--QNPLLTYLNCARNTL-TEI-DVSHNTQLTELDCHLNKKITKLDV-----TPQTQLTTLDCSFNK-ITE 184 (457)
T ss_dssp CCSCCC--CT--TCTTCCEEECTTSCC-SCC-CCTTCTTCCEEECTTCSCCCCCCC-----TTCTTCCEEECCSSC-CCC
T ss_pred cCCeec--CC--CCCcCCEEECCCCcc-cee-ccccCCcCCEEECCCCCccccccc-----ccCCcCCEEECCCCc-cce
Confidence 333322 11 344444444444432 222 234444455555544433332221 123444444444332 111
Q ss_pred hhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccc
Q 010426 261 WDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDM 340 (511)
Q Consensus 261 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 340 (511)
+. ...+++|+.|++++| .++ .++...+++|+.|++++| .++.++...+ ++|+.|++++| .++.+| .
T Consensus 185 l~-------l~~l~~L~~L~l~~N-~l~-~~~l~~l~~L~~L~Ls~N-~l~~ip~~~l-~~L~~L~l~~N-~l~~~~--~ 250 (457)
T 3bz5_A 185 LD-------VSQNKLLNRLNCDTN-NIT-KLDLNQNIQLTFLDCSSN-KLTEIDVTPL-TQLTYFDCSVN-PLTELD--V 250 (457)
T ss_dssp CC-------CTTCTTCCEEECCSS-CCS-CCCCTTCTTCSEEECCSS-CCSCCCCTTC-TTCSEEECCSS-CCSCCC--C
T ss_pred ec-------cccCCCCCEEECcCC-cCC-eeccccCCCCCEEECcCC-cccccCcccc-CCCCEEEeeCC-cCCCcC--H
Confidence 11 235667777777774 455 345556777777777774 4455553333 37777777777 444444 4
Q ss_pred cCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcc-----
Q 010426 341 HELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDE----- 415 (511)
Q Consensus 341 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----- 415 (511)
..+++|+.|+++++ +|+.|+++ ++..+..++ +..+++|+.|++++ |.. +..+|..
T Consensus 251 ~~l~~L~~L~l~~n-------------~L~~L~l~--~n~~~~~~~---~~~l~~L~~L~Ls~-n~~-l~~l~~~~~~L~ 310 (457)
T 3bz5_A 251 STLSKLTTLHCIQT-------------DLLEIDLT--HNTQLIYFQ---AEGCRKIKELDVTH-NTQ-LYLLDCQAAGIT 310 (457)
T ss_dssp TTCTTCCEEECTTC-------------CCSCCCCT--TCTTCCEEE---CTTCTTCCCCCCTT-CTT-CCEEECTTCCCS
T ss_pred HHCCCCCEEeccCC-------------CCCEEECC--CCccCCccc---ccccccCCEEECCC-Ccc-cceeccCCCcce
Confidence 55667777766654 34555554 333333332 45678888888888 443 4444320
Q ss_pred cccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccC
Q 010426 416 EMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFP 465 (511)
Q Consensus 416 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~ 465 (511)
.......++|++|++++|. ++.++ +..+++|+.|++++ ++++.++
T Consensus 311 ~L~l~~~~~L~~L~L~~N~-l~~l~---l~~l~~L~~L~l~~-N~l~~l~ 355 (457)
T 3bz5_A 311 ELDLSQNPKLVYLYLNNTE-LTELD---VSHNTKLKSLSCVN-AHIQDFS 355 (457)
T ss_dssp CCCCTTCTTCCEEECTTCC-CSCCC---CTTCTTCSEEECCS-SCCCBCT
T ss_pred EechhhcccCCEEECCCCc-ccccc---cccCCcCcEEECCC-CCCCCcc
Confidence 0001456788888888887 77763 78899999999998 5776654
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=4.3e-25 Score=214.91 Aligned_cols=299 Identities=23% Similarity=0.230 Sum_probs=174.6
Q ss_pred CceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
.+++|++|+++++.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|. +..++ .++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEE
Confidence 45677888888888877753 777888888888888 6666666 7788888888888887 66654 577777777777
Q ss_pred ceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhh
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELV 162 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (511)
++++.+...+ .+..+++|+.|++++|. . ...
T Consensus 117 l~~n~i~~~~---------------------------------~~~~l~~L~~L~l~~n~------~----------~~~ 147 (347)
T 4fmz_A 117 LNEDNISDIS---------------------------------PLANLTKMYSLNLGANH------N----------LSD 147 (347)
T ss_dssp CTTSCCCCCG---------------------------------GGTTCTTCCEEECTTCT------T----------CCC
T ss_pred CcCCcccCch---------------------------------hhccCCceeEEECCCCC------C----------ccc
Confidence 6555432220 02233455666665551 0 001
Q ss_pred hcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCC
Q 010426 163 LGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSN 242 (511)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 242 (511)
...+..+++|++|+++++....++. +. .+++|+.|++++|. +..++.+..+++|+.+++++|.. ....
T Consensus 148 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~------- 215 (347)
T 4fmz_A 148 LSPLSNMTGLNYLTVTESKVKDVTP-IA--NLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQI-TDIT------- 215 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCC-CCCG-------
T ss_pred ccchhhCCCCcEEEecCCCcCCchh-hc--cCCCCCEEEccCCc-ccccccccCCCccceeecccCCC-CCCc-------
Confidence 1123445556666666555544443 21 35566666666554 33333445555555555555431 1110
Q ss_pred CCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCc
Q 010426 243 PFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSL 322 (511)
Q Consensus 243 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L 322 (511)
. ...+++|++|++++| .+++..+...+++|+.|++++| .++.++.....++|
T Consensus 216 -------------------~-------~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L 267 (347)
T 4fmz_A 216 -------------------P-------VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTN-QISDINAVKDLTKL 267 (347)
T ss_dssp -------------------G-------GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGGTTCTTC
T ss_pred -------------------h-------hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCC-ccCCChhHhcCCCc
Confidence 0 234556666666654 3332222345666666666664 33333322222477
Q ss_pred CeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEE
Q 010426 323 KWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLW 400 (511)
Q Consensus 323 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~ 400 (511)
++|++++| .++.++ .+..+++|++|++++| .++..... ..+++|++|+++ .+.+++..+ +..+++|++|+
T Consensus 268 ~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~---~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 268 KMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLS---QNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp CEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECC---SSSCCCCGG--GGGCTTCSEES
T ss_pred CEEEccCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEcc---CCccccccC--hhhhhccceee
Confidence 78888777 555553 4677788888888887 44433322 456788888884 344555554 67788888888
Q ss_pred Eec
Q 010426 401 IEG 403 (511)
Q Consensus 401 l~~ 403 (511)
+++
T Consensus 340 l~~ 342 (347)
T 4fmz_A 340 FAN 342 (347)
T ss_dssp SSC
T ss_pred hhh
Confidence 888
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-24 Score=225.71 Aligned_cols=303 Identities=15% Similarity=0.102 Sum_probs=177.1
Q ss_pred ccccccEEeccCcccccccccc-ccCcCccceEEecCcccccccCC-cccCcCCCccCCceeeecCCCccCccccccccc
Q 010426 26 SLINLQVLLLRDCYYLLKLPSK-LRNLINLRHLDIMGAYLIKEIPF-GMKELKNLQALSNFIVGTDTKSSGLKDLKSLAF 103 (511)
Q Consensus 26 ~l~~L~~L~L~~n~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 103 (511)
.+++++.|++++| .+..+|.. ++.+++|++|++++|. +..++. .++.+++|++|+++++.+...
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 114 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYL------------ 114 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCC------------
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCC------------
Confidence 4578888888888 77777754 5778888888888888 666654 577777777777654433111
Q ss_pred cCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCc
Q 010426 104 VGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGK 183 (511)
Q Consensus 104 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 183 (511)
....+..+++|++|++++|.+.
T Consensus 115 ----------------------------------------------------------~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 115 ----------------------------------------------------------PPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp ----------------------------------------------------------CTTTTTTCTTCCEEECCSSCCC
T ss_pred ----------------------------------------------------------CHHHHcCCCCCCEEEeeCCCCC
Confidence 0012333456666666666666
Q ss_pred cCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhh
Q 010426 184 KIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWD 262 (511)
Q Consensus 184 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 262 (511)
.+|..+.. .+++|++|++++|......+ .++.+++|+.|++++|. +..++
T Consensus 137 ~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--------------------------- 187 (597)
T 3oja_B 137 SLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--------------------------- 187 (597)
T ss_dssp CCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---------------------------
T ss_pred CCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---------------------------
Confidence 66654322 57788888888876444444 57777888888887765 11111
Q ss_pred hhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccC
Q 010426 263 TKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHE 342 (511)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 342 (511)
...+++|+.|+++++ .+.. + ...++|+.|++++| .+..++. ..+++|+.|++++| .++.. ..+..
T Consensus 188 -------~~~l~~L~~L~l~~n-~l~~-l--~~~~~L~~L~ls~n-~l~~~~~-~~~~~L~~L~L~~n-~l~~~-~~l~~ 252 (597)
T 3oja_B 188 -------LSLIPSLFHANVSYN-LLST-L--AIPIAVEELDASHN-SINVVRG-PVNVELTILKLQHN-NLTDT-AWLLN 252 (597)
T ss_dssp -------GGGCTTCSEEECCSS-CCSE-E--ECCTTCSEEECCSS-CCCEEEC-SCCSCCCEEECCSS-CCCCC-GGGGG
T ss_pred -------hhhhhhhhhhhcccC-cccc-c--cCCchhheeeccCC-ccccccc-ccCCCCCEEECCCC-CCCCC-hhhcc
Confidence 123455555555553 2221 1 12345666666663 3444443 23347788888777 34332 45667
Q ss_pred CCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCccccccc
Q 010426 343 LNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMM 420 (511)
Q Consensus 343 ~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 420 (511)
+++|++|++++| .++..+. ...+++|+.|++ +.+.++.++. .+..+++|+.|++++ | . +..+|. .. .
T Consensus 253 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L---s~N~l~~l~~-~~~~l~~L~~L~Ls~-N-~-l~~i~~-~~--~ 321 (597)
T 3oja_B 253 YPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYI---SNNRLVALNL-YGQPIPTLKVLDLSH-N-H-LLHVER-NQ--P 321 (597)
T ss_dssp CTTCSEEECCSS-CCCEEESGGGTTCSSCCEEEC---TTSCCCEEEC-SSSCCTTCCEEECCS-S-C-CCCCGG-GH--H
T ss_pred CCCCCEEECCCC-ccCCCCHHHhcCccCCCEEEC---CCCCCCCCCc-ccccCCCCcEEECCC-C-C-CCccCc-cc--c
Confidence 777777777777 4444322 244566666666 3344444322 334566666666666 2 2 445554 32 3
Q ss_pred CCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 421 LPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 421 ~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
.+++|++|++++|. +..++ +..+++|+.|++++|+
T Consensus 322 ~l~~L~~L~L~~N~-l~~~~---~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 322 QFDRLENLYLDHNS-IVTLK---LSTHHTLKNLTLSHND 356 (597)
T ss_dssp HHTTCSEEECCSSC-CCCCC---CCTTCCCSEEECCSSC
T ss_pred cCCCCCEEECCCCC-CCCcC---hhhcCCCCEEEeeCCC
Confidence 45666666666666 55443 4455666666666643
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.7e-24 Score=217.57 Aligned_cols=311 Identities=17% Similarity=0.178 Sum_probs=195.6
Q ss_pred cEeecCCCccccCCccccccccccEEeccCccccccc-cccccCcCccceEEecCccccccc-CCcccCcCCCccCCcee
Q 010426 8 RYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEI-PFGMKELKNLQALSNFI 85 (511)
Q Consensus 8 r~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~~~~ 85 (511)
+.++.+++.+..+|..+. +++++|+|++| .+..+ |..|.++++|++|++++|. +..+ |..++.+++|++|++++
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCC
Confidence 567888888989987664 68999999999 56555 4678999999999999998 6666 45688888888888665
Q ss_pred eecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcC
Q 010426 86 VGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGK 165 (511)
Q Consensus 86 ~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (511)
+.+...+. ..+..+++|+.|++++
T Consensus 90 n~l~~~~~-------------------------------~~~~~l~~L~~L~Ls~------------------------- 113 (477)
T 2id5_A 90 NRLKLIPL-------------------------------GVFTGLSNLTKLDISE------------------------- 113 (477)
T ss_dssp SCCCSCCT-------------------------------TSSTTCTTCCEEECTT-------------------------
T ss_pred CcCCccCc-------------------------------ccccCCCCCCEEECCC-------------------------
Confidence 54322100 0122233444444444
Q ss_pred CCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCC
Q 010426 166 LKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPF 244 (511)
Q Consensus 166 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 244 (511)
+.+..++.... ..+++|+.|++++|......+ .+..+++|++|++++|.. ..++
T Consensus 114 --------------n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--------- 168 (477)
T 2id5_A 114 --------------NKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIP--------- 168 (477)
T ss_dssp --------------SCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCC---------
T ss_pred --------------CccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccC---------
Confidence 33332221111 134555555555554222222 444555555555555431 1100
Q ss_pred CCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCC--CCCCCCCCCEEEEEccCCcceecccCCC-CC
Q 010426 245 QSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGIL--PLCKNSQLESLCIRYCDSLTFIARRKLP-SS 321 (511)
Q Consensus 245 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~ 321 (511)
. ..+..+++|+.|+++++ .+.... ....+++|+.|++++|+.+..++...+. .+
T Consensus 169 ---------------~-------~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 169 ---------------T-------EALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp ---------------H-------HHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred ---------------h-------hHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 0 00123444555555443 222111 1224566777777776666666544332 58
Q ss_pred cCeEeeccCccccccc-ccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccE
Q 010426 322 LKWLEIENCEKLESLP-NDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRR 398 (511)
Q Consensus 322 L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~ 398 (511)
|+.|++++| .++.+| ..+..+++|++|++++| .++.++.. ..+++|++|++ +.+.++.+.+..+..+++|+.
T Consensus 226 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQL---VGGQLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp CSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEEC---CSSCCSEECTTTBTTCTTCCE
T ss_pred ccEEECcCC-cccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEEC---CCCccceECHHHhcCcccCCE
Confidence 999999999 566666 46789999999999999 56666543 56789999999 566777777777889999999
Q ss_pred EEEecCCCCCccccCcccccccCCCccceEeecCCcCCc
Q 010426 399 LWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLK 437 (511)
Q Consensus 399 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 437 (511)
|++++ +. ++.++...+ ..+++|++|++++|+ +.
T Consensus 301 L~L~~--N~-l~~~~~~~~--~~l~~L~~L~l~~N~-l~ 333 (477)
T 2id5_A 301 LNVSG--NQ-LTTLEESVF--HSVGNLETLILDSNP-LA 333 (477)
T ss_dssp EECCS--SC-CSCCCGGGB--SCGGGCCEEECCSSC-EE
T ss_pred EECCC--Cc-CceeCHhHc--CCCcccCEEEccCCC-cc
Confidence 99999 34 777775222 567899999999988 54
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1e-23 Score=214.28 Aligned_cols=286 Identities=22% Similarity=0.253 Sum_probs=188.6
Q ss_pred eeccEeecCCCccccC-CccccccccccEEeccCccccccc-cccccCcCccceEEecCcccccccCCc-ccCcCCCccC
Q 010426 5 KHLRYLNLSDTRIRNL-PKPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQAL 81 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L 81 (511)
+++++|+|++|.|..+ +..|..+++|++|+|++| .+..+ |..++++++|++|++++|. +..+|.. ++.+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEE
Confidence 4789999999999987 467999999999999999 55544 6789999999999999999 8888876 7899999999
Q ss_pred CceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhh
Q 010426 82 SNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREEL 161 (511)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (511)
+++++.+... ....+..+++|+.|++++
T Consensus 110 ~Ls~n~i~~~-------------------------------~~~~~~~l~~L~~L~l~~--------------------- 137 (477)
T 2id5_A 110 DISENKIVIL-------------------------------LDYMFQDLYNLKSLEVGD--------------------- 137 (477)
T ss_dssp ECTTSCCCEE-------------------------------CTTTTTTCTTCCEEEECC---------------------
T ss_pred ECCCCccccC-------------------------------ChhHccccccCCEEECCC---------------------
Confidence 8766543211 001123334455555544
Q ss_pred hhcCCCCCCCCceEEEecCCCccCCc-ccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCC
Q 010426 162 VLGKLKPCTSIKKLTIKGYGGKKIPS-WIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGE 238 (511)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~ 238 (511)
+.+..++. .+. .+++|+.|++++|. +..++ .+..+++|+.|++++|.. ..+..
T Consensus 138 ------------------n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i-~~~~~-- 193 (477)
T 2id5_A 138 ------------------NDLVYISHRAFS--GLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNI-NAIRD-- 193 (477)
T ss_dssp ------------------TTCCEECTTSST--TCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCC-CEECT--
T ss_pred ------------------CccceeChhhcc--CCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcC-cEeCh--
Confidence 43333221 222 45566666666654 33333 355566666666666542 11110
Q ss_pred CCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCC--CCCCCCEEEEEccCCcceeccc
Q 010426 239 HCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLC--KNSQLESLCIRYCDSLTFIARR 316 (511)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~ 316 (511)
.. +..+++|++|++++|+.+. .++.. ...+|+.|++++| .++.++..
T Consensus 194 ~~-----------------------------~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n-~l~~~~~~ 242 (477)
T 2id5_A 194 YS-----------------------------FKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHC-NLTAVPYL 242 (477)
T ss_dssp TC-----------------------------SCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESS-CCCSCCHH
T ss_pred hh-----------------------------cccCcccceeeCCCCcccc-ccCcccccCccccEEECcCC-cccccCHH
Confidence 01 1233444455554443332 22211 2336777777774 34444422
Q ss_pred CC--CCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhcc
Q 010426 317 KL--PSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHR 392 (511)
Q Consensus 317 ~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~ 392 (511)
.+ .++|+.|++++|......+..+..+++|++|++++| .++.+... ..+++|+.|++ +.+.++.+.+..+..
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L---~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNV---SGNQLTTLEESVFHS 318 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEEC---CSSCCSCCCGGGBSC
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEEC---CCCcCceeCHhHcCC
Confidence 11 259999999999544333456889999999999999 56665433 56799999999 566788777777899
Q ss_pred CCcccEEEEec
Q 010426 393 LTSLRRLWIEG 403 (511)
Q Consensus 393 l~~L~~L~l~~ 403 (511)
+++|+.|++++
T Consensus 319 l~~L~~L~l~~ 329 (477)
T 2id5_A 319 VGNLETLILDS 329 (477)
T ss_dssp GGGCCEEECCS
T ss_pred CcccCEEEccC
Confidence 99999999999
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=8e-23 Score=202.11 Aligned_cols=305 Identities=14% Similarity=0.116 Sum_probs=192.2
Q ss_pred CceeccEeecCCCccccCCcc-ccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCCc-ccCcCCCc
Q 010426 3 GWKHLRYLNLSDTRIRNLPKP-TCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQ 79 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~ 79 (511)
.++++|+|+++++.+..+|.. |..+++|++|++++| .+..++ ..++.+++|++|++++|. +..+++. ++.+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 468899999999999999866 789999999999999 666665 579999999999999999 7777655 89999999
Q ss_pred cCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhh
Q 010426 80 ALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESRE 159 (511)
Q Consensus 80 ~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 159 (511)
+|+++++.+...+.
T Consensus 121 ~L~L~~n~l~~l~~------------------------------------------------------------------ 134 (390)
T 3o6n_A 121 VLVLERNDLSSLPR------------------------------------------------------------------ 134 (390)
T ss_dssp EEECCSSCCCCCCT------------------------------------------------------------------
T ss_pred EEECCCCccCcCCH------------------------------------------------------------------
Confidence 99876654422100
Q ss_pred hhhhcCCCCCCCCceEEEecCCCccCCcc-cCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCC
Q 010426 160 ELVLGKLKPCTSIKKLTIKGYGGKKIPSW-IADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGE 238 (511)
Q Consensus 160 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 238 (511)
..+..+++|++|+++++.+..++.. +. .+++|++|++++|.. ..+ .++.+++|+.|++++|.. ..++
T Consensus 135 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l-~~~-~~~~l~~L~~L~l~~n~l-~~~~--- 202 (390)
T 3o6n_A 135 ----GIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRL-THV-DLSLIPSLFHANVSYNLL-STLA--- 202 (390)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSSCC-SBC-CGGGCTTCSEEECCSSCC-SEEE---
T ss_pred ----HHhcCCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCCcC-Ccc-ccccccccceeecccccc-cccC---
Confidence 0122334555555555555444322 22 466777777777652 222 345566777777766542 2111
Q ss_pred CCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCC
Q 010426 239 HCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKL 318 (511)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 318 (511)
..++|+.|++.++ .+. .++....++|+.|++++|. ++..+....
T Consensus 203 ----~~~~L~~L~l~~n------------------------------~l~-~~~~~~~~~L~~L~l~~n~-l~~~~~l~~ 246 (390)
T 3o6n_A 203 ----IPIAVEELDASHN------------------------------SIN-VVRGPVNVELTILKLQHNN-LTDTAWLLN 246 (390)
T ss_dssp ----CCSSCSEEECCSS------------------------------CCC-EEECCCCSSCCEEECCSSC-CCCCGGGGG
T ss_pred ----CCCcceEEECCCC------------------------------eee-eccccccccccEEECCCCC-CcccHHHcC
Confidence 0233444443332 222 1222233455555555532 222221112
Q ss_pred CCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC-CCCCCCceEEEEecccccccchhhhhhccCCccc
Q 010426 319 PSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE-GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLR 397 (511)
Q Consensus 319 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~ 397 (511)
.++|++|++++|......|..+..+++|++|++++| .++.++.. ..+++|++|+++ .+.++.++. .+..+++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~---~n~l~~~~~-~~~~l~~L~ 321 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS---HNHLLHVER-NQPQFDRLE 321 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECC---SSCCCCCGG-GHHHHTTCS
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECC---CCcceecCc-cccccCcCC
Confidence 248888888888544444677888899999999988 56655543 456777888774 334554432 355677777
Q ss_pred EEEEecCCCCCccccCcccccccCCCccceEeecCCcCCc
Q 010426 398 RLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLK 437 (511)
Q Consensus 398 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 437 (511)
.|++++ + . +..++. ..+++|++|++++|+ +.
T Consensus 322 ~L~L~~-N-~-i~~~~~-----~~~~~L~~L~l~~N~-~~ 352 (390)
T 3o6n_A 322 NLYLDH-N-S-IVTLKL-----STHHTLKNLTLSHND-WD 352 (390)
T ss_dssp EEECCS-S-C-CCCCCC-----CTTCCCSEEECCSSC-EE
T ss_pred EEECCC-C-c-cceeCc-----hhhccCCEEEcCCCC-cc
Confidence 777777 2 2 555553 456777777777776 54
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.4e-22 Score=208.41 Aligned_cols=305 Identities=14% Similarity=0.118 Sum_probs=201.5
Q ss_pred CceeccEeecCCCccccCCcc-ccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCCc-ccCcCCCc
Q 010426 3 GWKHLRYLNLSDTRIRNLPKP-TCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQ 79 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~ 79 (511)
.+.+++.|++++|.+..+|.. |+.+++|++|+|++| .+..++ ..++.+++|++|++++|. +..+|+. ++.+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence 357899999999999999865 788999999999999 565555 579999999999999999 7777765 79999999
Q ss_pred cCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhh
Q 010426 80 ALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESRE 159 (511)
Q Consensus 80 ~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 159 (511)
+|+++++.+...+.
T Consensus 127 ~L~L~~n~l~~l~~------------------------------------------------------------------ 140 (597)
T 3oja_B 127 VLVLERNDLSSLPR------------------------------------------------------------------ 140 (597)
T ss_dssp EEECCSSCCCCCCT------------------------------------------------------------------
T ss_pred EEEeeCCCCCCCCH------------------------------------------------------------------
Confidence 99876664422200
Q ss_pred hhhhcCCCCCCCCceEEEecCCCccCCc-ccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCC
Q 010426 160 ELVLGKLKPCTSIKKLTIKGYGGKKIPS-WIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGE 238 (511)
Q Consensus 160 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 238 (511)
..+..+++|++|++++|.+..++. .+. .+++|+.|++++|.. ..+ .++.+++|+.|++++|.. ..++
T Consensus 141 ----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l-~~~-~~~~l~~L~~L~l~~n~l-~~l~--- 208 (597)
T 3oja_B 141 ----GIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRL-THV-DLSLIPSLFHANVSYNLL-STLA--- 208 (597)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSCC-SBC-CGGGCTTCSEEECCSSCC-SEEE---
T ss_pred ----HHhccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCCC-CCc-ChhhhhhhhhhhcccCcc-cccc---
Confidence 012233455555555555544433 232 467777777777652 322 245566777777766542 1111
Q ss_pred CCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCC
Q 010426 239 HCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKL 318 (511)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 318 (511)
..++|+.|++.++. +. .++....++|+.|++++|. ++..+...-
T Consensus 209 ----~~~~L~~L~ls~n~------------------------------l~-~~~~~~~~~L~~L~L~~n~-l~~~~~l~~ 252 (597)
T 3oja_B 209 ----IPIAVEELDASHNS------------------------------IN-VVRGPVNVELTILKLQHNN-LTDTAWLLN 252 (597)
T ss_dssp ----CCTTCSEEECCSSC------------------------------CC-EEECSCCSCCCEEECCSSC-CCCCGGGGG
T ss_pred ----CCchhheeeccCCc------------------------------cc-ccccccCCCCCEEECCCCC-CCCChhhcc
Confidence 12334444444332 21 1122222345555555532 222221112
Q ss_pred CCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC-CCCCCCceEEEEecccccccchhhhhhccCCccc
Q 010426 319 PSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE-GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLR 397 (511)
Q Consensus 319 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~ 397 (511)
.++|+.|++++|......|..+..+++|++|++++| .++.++.. ..+++|+.|+++ .+.++.++. .+..+++|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls---~N~l~~i~~-~~~~l~~L~ 327 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS---HNHLLHVER-NQPQFDRLE 327 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECC---SSCCCCCGG-GHHHHTTCS
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECC---CCCCCccCc-ccccCCCCC
Confidence 248888888888555555778888999999999998 66666544 457899999994 455665543 567889999
Q ss_pred EEEEecCCCCCccccCcccccccCCCccceEeecCCcCCc
Q 010426 398 RLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLK 437 (511)
Q Consensus 398 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 437 (511)
.|++++ | . +..++. ..+++|+.|++++|+ +.
T Consensus 328 ~L~L~~-N-~-l~~~~~-----~~~~~L~~L~l~~N~-~~ 358 (597)
T 3oja_B 328 NLYLDH-N-S-IVTLKL-----STHHTLKNLTLSHND-WD 358 (597)
T ss_dssp EEECCS-S-C-CCCCCC-----CTTCCCSEEECCSSC-EE
T ss_pred EEECCC-C-C-CCCcCh-----hhcCCCCEEEeeCCC-CC
Confidence 999999 3 3 666664 668899999999998 65
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3.5e-21 Score=185.89 Aligned_cols=287 Identities=18% Similarity=0.208 Sum_probs=163.7
Q ss_pred ccccEEeccCccccccccccccCcCccceEEecCcccccccCC-cccCcCCCccCCceeeecCCCccCccccccccccCc
Q 010426 28 INLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPF-GMKELKNLQALSNFIVGTDTKSSGLKDLKSLAFVGG 106 (511)
Q Consensus 28 ~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~ 106 (511)
.++++++++++ .+..+|..+. ++|++|++++|. +..++. .++.+++|++|+++++.+...
T Consensus 33 c~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------- 93 (332)
T 2ft3_A 33 CHLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKI--------------- 93 (332)
T ss_dssp EETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEE---------------
T ss_pred ccCCEEECCCC-CccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCcc---------------
Confidence 36888888877 6677776553 578888888887 666654 477777777776544432110
Q ss_pred eEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCccCC
Q 010426 107 ELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKKIP 186 (511)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 186 (511)
....+..+++|++|+++++....+|
T Consensus 94 -------------------------------------------------------~~~~~~~l~~L~~L~L~~n~l~~l~ 118 (332)
T 2ft3_A 94 -------------------------------------------------------HEKAFSPLRKLQKLYISKNHLVEIP 118 (332)
T ss_dssp -------------------------------------------------------CGGGSTTCTTCCEEECCSSCCCSCC
T ss_pred -------------------------------------------------------CHhHhhCcCCCCEEECCCCcCCccC
Confidence 0012333456666666666665555
Q ss_pred cccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhh
Q 010426 187 SWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTK 264 (511)
Q Consensus 187 ~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 264 (511)
..+ +++|++|++++|.. ..++ .+..+++|+.|++++|.. ...+
T Consensus 119 ~~~----~~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l-~~~~----------------------------- 163 (332)
T 2ft3_A 119 PNL----PSSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPL-ENSG----------------------------- 163 (332)
T ss_dssp SSC----CTTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCC-BGGG-----------------------------
T ss_pred ccc----cccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCcc-ccCC-----------------------------
Confidence 443 26777888877763 3444 366777777777777652 1100
Q ss_pred ccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCC
Q 010426 265 FEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELN 344 (511)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 344 (511)
........+ +|+.|+++++ .++ .+|.. ++++|++|++++|......+..+..++
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n-~l~-~l~~~-----------------------~~~~L~~L~l~~n~i~~~~~~~l~~l~ 217 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEA-KLT-GIPKD-----------------------LPETLNELHLDHNKIQAIELEDLLRYS 217 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSS-BCS-SCCSS-----------------------SCSSCSCCBCCSSCCCCCCTTSSTTCT
T ss_pred CCcccccCC-ccCEEECcCC-CCC-ccCcc-----------------------ccCCCCEEECCCCcCCccCHHHhcCCC
Confidence 000001122 5666666653 333 22221 113566666666633222234566667
Q ss_pred CcCeEEecCCCCCcccCC--CCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCccccccc--
Q 010426 345 YLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMM-- 420 (511)
Q Consensus 345 ~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-- 420 (511)
+|++|++++| .++.++. ...+++|++|+++ .+.++.++. .+..+++|+.|++++ +. ++.++. ..+..
T Consensus 218 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~---~N~l~~lp~-~l~~l~~L~~L~l~~--N~-l~~~~~-~~~~~~~ 288 (332)
T 2ft3_A 218 KLYRLGLGHN-QIRMIENGSLSFLPTLRELHLD---NNKLSRVPA-GLPDLKLLQVVYLHT--NN-ITKVGV-NDFCPVG 288 (332)
T ss_dssp TCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECC---SSCCCBCCT-TGGGCTTCCEEECCS--SC-CCBCCT-TSSSCSS
T ss_pred CCCEEECCCC-cCCcCChhHhhCCCCCCEEECC---CCcCeecCh-hhhcCccCCEEECCC--CC-CCccCh-hHccccc
Confidence 7777777776 4454443 2445667777773 334444332 466778888888887 33 666654 22211
Q ss_pred ---CCCccceEeecCCcCCc--ccCccccCCCCCcCEEeEecCC
Q 010426 421 ---LPTSLSYLNIIGFRNLK--MLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 421 ---~~~~L~~L~l~~~~~l~--~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
..++|+.|++++|+ +. .++...+..+++|+.+++++|.
T Consensus 289 ~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 14678888888888 65 4555778888888888888764
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=7.3e-21 Score=183.53 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=68.8
Q ss_pred CcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEecccccccchhhhhhccCCcccE
Q 010426 321 SLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRR 398 (511)
Q Consensus 321 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~ 398 (511)
+|++|++++|..-...+..+..+++|++|++++| .++..+. ...+++|++|+++ .+.++.++ ..+..+++|++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~---~N~l~~lp-~~l~~l~~L~~ 267 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLN---NNKLVKVP-GGLADHKYIQV 267 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECC---SSCCSSCC-TTTTTCSSCCE
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECC---CCcCccCC-hhhccCCCcCE
Confidence 4444555444222222344555555555555555 3443332 1334556666663 33333332 23556677777
Q ss_pred EEEecCCCCCccccCcccccc-----cCCCccceEeecCCcCCcc--cCccccCCCCCcCEEeEecC
Q 010426 399 LWIEGCDDDEAECFPDEEMGM-----MLPTSLSYLNIIGFRNLKM--LSSKGFQSLTSLEFLWIDDC 458 (511)
Q Consensus 399 L~l~~~~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~--l~~~~~~~l~~L~~L~l~~c 458 (511)
|++++ +. ++.++. ..+. ...++|+.|++++|+ ++. ++...+..++.++.++++++
T Consensus 268 L~l~~--N~-i~~~~~-~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 268 VYLHN--NN-ISAIGS-NDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EECCS--SC-CCCCCT-TSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EECCC--Cc-CCccCh-hhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 77776 22 555554 2211 124678888888888 653 44467888888999988875
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=3.6e-23 Score=216.27 Aligned_cols=135 Identities=11% Similarity=0.029 Sum_probs=67.1
Q ss_pred CcCeEeeccCccccccccccc-CCCCcCeEEecC---CCCCcccCCC-------CCCCCCceEEEEeccccc-ccchhhh
Q 010426 321 SLKWLEIENCEKLESLPNDMH-ELNYLQHLCINR---CPSIVRFPEE-------GFPTNLVELEIRRVDVKM-YKAIIHW 388 (511)
Q Consensus 321 ~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~---~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~-l~~~~~~ 388 (511)
+|++|+++.+..-...+..+. .+++|++|++++ |..+++.+.. ..+++|+.|+++ .|.. +++....
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~--~~~~~l~~~~~~ 456 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY--LRQGGLTDLGLS 456 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE--CCGGGCCHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe--cCCCCccHHHHH
Confidence 666666643322112222222 366677777763 3344433211 225667777775 4442 3433332
Q ss_pred hh-ccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccC-ccccCCCCCcCEEeEecCCCCcc
Q 010426 389 GL-HRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLS-SKGFQSLTSLEFLWIDDCPNLTS 463 (511)
Q Consensus 389 ~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~l~~L~~L~l~~c~~l~~ 463 (511)
.+ ..+++|+.|++++ |. ++.... ..+...+++|++|++++|+ ++... ......+++|++|+|++|+ ++.
T Consensus 457 ~~~~~~~~L~~L~L~~-n~--l~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGY-VG--ESDEGL-MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHSCTTCCEEEECS-CC--SSHHHH-HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHHHhCccceEeeccC-CC--CCHHHH-HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 33 2466777777776 32 322111 1111345677777777776 54321 1233456777777777765 544
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.2e-20 Score=181.41 Aligned_cols=207 Identities=20% Similarity=0.269 Sum_probs=143.1
Q ss_pred ceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCc
Q 010426 4 WKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSN 83 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~ 83 (511)
..+++.|++++|.+..+|..++.+++|++|+|++| .+..+|..++++++|++|++++|. +..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 46899999999999999999999999999999999 666999989999999999999999 8899989999999999998
Q ss_pred eeeecCCC-ccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhh
Q 010426 84 FIVGTDTK-SSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELV 162 (511)
Q Consensus 84 ~~~~~~~~-~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (511)
+++..... |..+.. .. ....+..+++|+.|++++|... ..
T Consensus 158 ~~n~~~~~~p~~~~~---~~--------------------~~~~~~~l~~L~~L~L~~n~l~----------------~l 198 (328)
T 4fcg_A 158 RACPELTELPEPLAS---TD--------------------ASGEHQGLVNLQSLRLEWTGIR----------------SL 198 (328)
T ss_dssp EEETTCCCCCSCSEE---EC---------------------CCCEEESTTCCEEEEEEECCC----------------CC
T ss_pred CCCCCccccChhHhh---cc--------------------chhhhccCCCCCEEECcCCCcC----------------cc
Confidence 88654322 111110 00 0012445667777777777111 11
Q ss_pred hcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCC
Q 010426 163 LGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCS 241 (511)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 241 (511)
...+..+++|++|++++|....+|..+. .+++|++|++++|...+.+| .++.+++|+.|++++|.....++ ..+
T Consensus 199 p~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p---~~~ 273 (328)
T 4fcg_A 199 PASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP---LDI 273 (328)
T ss_dssp CGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC---TTG
T ss_pred hHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc---hhh
Confidence 1234556677777777777766665544 46777777777777666666 56677777777777766554443 122
Q ss_pred CCCCCCCeEEcCCCC
Q 010426 242 NPFQSLETLWFEDLP 256 (511)
Q Consensus 242 ~~~~~L~~L~l~~~~ 256 (511)
..+++|+.|+++++.
T Consensus 274 ~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCV 288 (328)
T ss_dssp GGCTTCCEEECTTCT
T ss_pred hcCCCCCEEeCCCCC
Confidence 234444444444443
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.5e-19 Score=174.30 Aligned_cols=261 Identities=16% Similarity=0.218 Sum_probs=157.9
Q ss_pred CCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCCCCCCCC
Q 010426 170 TSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSL 247 (511)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 247 (511)
.+++.++++++....+|..+ .++++.|++++|.. ..++ .++.+++|++|++++|......+ ..+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~------ 96 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISP---GAF------ 96 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCT---TTT------
T ss_pred CCCeEEEecCCCccccCccC----CCCCeEEECCCCcC-CEeChhhhccCCCCCEEECCCCcCCeeCH---HHh------
Confidence 36888888888777777544 36888999998874 4443 57888888899888876221111 122
Q ss_pred CeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCC--CCCcCeE
Q 010426 248 ETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKL--PSSLKWL 325 (511)
Q Consensus 248 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L 325 (511)
..+++|++|+++++ .++ .+|....++|++|++++| .++.++...+ .++|++|
T Consensus 97 -----------------------~~l~~L~~L~Ls~n-~l~-~l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 97 -----------------------APLVKLERLYLSKN-QLK-ELPEKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp -----------------------TTCTTCCEEECCSS-CCS-BCCSSCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEE
T ss_pred -----------------------cCCCCCCEEECCCC-cCC-ccChhhcccccEEECCCC-cccccCHhHhcCCccccEE
Confidence 23445555555542 333 344334455666666653 3333332111 1367777
Q ss_pred eeccCcccc--cccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEec
Q 010426 326 EIENCEKLE--SLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 326 ~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
++++|..-. ..+..+..+++|++|++++| .++.++.. .+++|++|++ +.+.++.+.+..+..+++|+.|++++
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHL---DGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEEEC---TTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEEEC---CCCcCCccCHHHhcCCCCCCEEECCC
Confidence 777764321 33455667777777777777 45555443 3367777777 44556655555677777777777777
Q ss_pred CCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--------CCcccE
Q 010426 404 CDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--------PSSILW 475 (511)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~ 475 (511)
+ . +..++...+ ..+++|++|++++|. ++.+| ..+..+++|++|++++ +.++.++...+ .++++.
T Consensus 226 -n-~-l~~~~~~~~--~~l~~L~~L~L~~N~-l~~lp-~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~ 297 (330)
T 1xku_A 226 -N-S-ISAVDNGSL--ANTPHLRELHLNNNK-LVKVP-GGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSG 297 (330)
T ss_dssp -S-C-CCEECTTTG--GGSTTCCEEECCSSC-CSSCC-TTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred -C-c-CceeChhhc--cCCCCCCEEECCCCc-CccCC-hhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccc
Confidence 2 2 555543122 456777777777776 77776 5667777777777777 35666554332 246677
Q ss_pred EEecCCcc
Q 010426 476 LNIWSCPK 483 (511)
Q Consensus 476 L~l~~c~~ 483 (511)
+++.+++.
T Consensus 298 l~l~~N~~ 305 (330)
T 1xku_A 298 VSLFSNPV 305 (330)
T ss_dssp EECCSSSS
T ss_pred eEeecCcc
Confidence 77777663
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=2.5e-19 Score=172.83 Aligned_cols=281 Identities=17% Similarity=0.158 Sum_probs=182.9
Q ss_pred CCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCC
Q 010426 170 TSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLE 248 (511)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 248 (511)
.+++.++++++....+|..+ .++++.|++++|......+ .++.+++|++|++++|......+ ..+..+++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE---KAFSPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG---GGSTTCTTCC
T ss_pred ccCCEEECCCCCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH---hHhhCcCCCC
Confidence 36888888888888887654 4689999999887433333 68889999999998886333222 3345578888
Q ss_pred eEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCC---CCCCCCCCEEEEEccCCcce--ecccCCC-CCc
Q 010426 249 TLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILP---LCKNSQLESLCIRYCDSLTF--IARRKLP-SSL 322 (511)
Q Consensus 249 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~--~~~~~~~-~~L 322 (511)
+|++.++.. ..+. ...+++|++|+++++ .+. .++ ...+++|+.|++++|. ++. +....+. .+|
T Consensus 106 ~L~L~~n~l-~~l~-------~~~~~~L~~L~l~~n-~i~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L 174 (332)
T 2ft3_A 106 KLYISKNHL-VEIP-------PNLPSSLVELRIHDN-RIR-KVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKL 174 (332)
T ss_dssp EEECCSSCC-CSCC-------SSCCTTCCEEECCSS-CCC-CCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCC
T ss_pred EEECCCCcC-CccC-------ccccccCCEEECCCC-ccC-ccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCCcc
Confidence 888877642 2221 122378888888874 454 333 2367788888888854 332 1122221 278
Q ss_pred CeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEecccccccchhhhhhccCCcccEEE
Q 010426 323 KWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLW 400 (511)
Q Consensus 323 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~ 400 (511)
++|++++| .++.+|..+. ++|++|++++| .++.++. ...+++|+.|++ +.+.++.+.+..+..+++|+.|+
T Consensus 175 ~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L---~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 175 NYLRISEA-KLTGIPKDLP--ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGL---GHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp SCCBCCSS-BCSSCCSSSC--SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBC---CSSCCCCCCTTGGGGCTTCCEEE
T ss_pred CEEECcCC-CCCccCcccc--CCCCEEECCCC-cCCccCHHHhcCCCCCCEEEC---CCCcCCcCChhHhhCCCCCCEEE
Confidence 88888888 5666665543 68888888888 5555543 255678888888 45566666666677888888888
Q ss_pred EecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCC------CCCcCEEeEecCCCCc-ccCCCCC--CC
Q 010426 401 IEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQS------LTSLEFLWIDDCPNLT-SFPEAGL--PS 471 (511)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~------l~~L~~L~l~~c~~l~-~~~~~~~--~~ 471 (511)
+++ + . +..+|. .+ ..+++|++|++++|. ++.++...+.. .+.|+.|++++++... .++...+ .+
T Consensus 248 L~~-N-~-l~~lp~-~l--~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 248 LDN-N-K-LSRVPA-GL--PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp CCS-S-C-CCBCCT-TG--GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCC-C-c-CeecCh-hh--hcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 888 3 3 667775 44 567888888888887 77776555543 4668888888865431 2322222 36
Q ss_pred cccEEEecCCc
Q 010426 472 SILWLNIWSCP 482 (511)
Q Consensus 472 ~L~~L~l~~c~ 482 (511)
+|+.+++.++.
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 77777777754
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=5e-22 Score=207.60 Aligned_cols=416 Identities=14% Similarity=0.047 Sum_probs=253.0
Q ss_pred CceeccEeecCCCcc----ccCCcccc------------ccccccEEeccCccccccccccccC-cC-ccceEEecCccc
Q 010426 3 GWKHLRYLNLSDTRI----RNLPKPTC------------SLINLQVLLLRDCYYLLKLPSKLRN-LI-NLRHLDIMGAYL 64 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i----~~l~~~~~------------~l~~L~~L~L~~n~~~~~l~~~~~~-l~-~L~~L~l~~~~~ 64 (511)
++++|+.|+++++.. ..+|..++ .+++|++|+|++|......+..++. ++ +|++|++++|..
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 567899999976432 22333333 6889999999998433333444555 34 499999998873
Q ss_pred cc--ccCCcccCcCCCccCCceeeecCCCc-----cCccccccccccCceEEEccccCCCChhhhHHhccccccccceeE
Q 010426 65 IK--EIPFGMKELKNLQALSNFIVGTDTKS-----SGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALS 137 (511)
Q Consensus 65 l~--~l~~~l~~l~~L~~L~~~~~~~~~~~-----~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 137 (511)
+. .++..+..+++|++|++.++.+.... .....+..|+ .+..................+..+++|+.|+
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~----~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE----VLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC----EEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc----EEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 32 12222457889999988777653320 0112233444 2222111111112234444556778999999
Q ss_pred EeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCc----cCCcccCCCCCCCccEEEEecCCCCCCCC-
Q 010426 138 LQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGK----KIPSWIADPSFSKMEVLGLENCENCTSLP- 212 (511)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 212 (511)
++++. . ......+..+++|++|+++.+... .....+ ..+++|+.++++++. ...++
T Consensus 227 L~~~~---------------~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~-~~~l~~ 287 (592)
T 3ogk_B 227 VGDFE---------------I-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL--VFPRKLCRLGLSYMG-PNEMPI 287 (592)
T ss_dssp CSSCB---------------G-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC--CCCTTCCEEEETTCC-TTTGGG
T ss_pred ccCcc---------------H-HHHHHHHhhhhHHHhhcccccccccchHHHHHHh--hccccccccCccccc-hhHHHH
Confidence 98761 0 011223445689999999864332 112222 257899999998753 34455
Q ss_pred CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeecc---------
Q 010426 213 SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILN--------- 283 (511)
Q Consensus 213 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~--------- 283 (511)
.+..+++|++|++++|. +....+. ..+..+++|+.|++... +.... + ......+++|++|++++
T Consensus 288 ~~~~~~~L~~L~Ls~~~-l~~~~~~-~~~~~~~~L~~L~L~~~--~~~~~--l-~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL-LETEDHC-TLIQKCPNLEVLETRNV--IGDRG--L-EVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp GGGGGGGCCEEEETTCC-CCHHHHH-HHHTTCTTCCEEEEEGG--GHHHH--H-HHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred HHhhcCCCcEEecCCCc-CCHHHHH-HHHHhCcCCCEEeccCc--cCHHH--H-HHHHHhCCCCCEEEeecCcccccccc
Confidence 56678999999999988 4322210 11244899999999832 22211 1 01124678999999995
Q ss_pred -CCCcCcC-CC--CCCCCCCCEEEEEccCCcceecccCC---CCCcCeEeecc---Ccccccc------cccccCCCCcC
Q 010426 284 -CSKFSGI-LP--LCKNSQLESLCIRYCDSLTFIARRKL---PSSLKWLEIEN---CEKLESL------PNDMHELNYLQ 347 (511)
Q Consensus 284 -c~~l~~~-~~--~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~L~~L~l~~---~~~l~~l------~~~~~~~~~L~ 347 (511)
|+.+++. +. ...+++|++|+++. +.++......+ .++|++|++++ |..++.. +..+..+++|+
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 6665532 11 12578999999955 55554322211 24899999984 4466653 33467899999
Q ss_pred eEEecCCCC-CcccCCC---CCCCCCceEEEEecccccccch-hhhhhccCCcccEEEEecCCCCCccccCcccccccCC
Q 010426 348 HLCINRCPS-IVRFPEE---GFPTNLVELEIRRVDVKMYKAI-IHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLP 422 (511)
Q Consensus 348 ~L~l~~~~~-l~~~~~~---~~~~~L~~L~l~~~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 422 (511)
+|++++|.. +++.... ..+++|+.|++. ++.+++. .+..+.++++|++|++++ |..+...++. +...+
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~---~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~---~~~~l 512 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG---YVGESDEGLMEFSRGCPNLQKLEMRG-CCFSERAIAA---AVTKL 512 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC---SCCSSHHHHHHHHTCCTTCCEEEEES-CCCBHHHHHH---HHHHC
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeecc---CCCCCHHHHHHHHhcCcccCeeeccC-CCCcHHHHHH---HHHhc
Confidence 999988743 3322111 347899999994 5556653 334557899999999999 4421222222 12468
Q ss_pred CccceEeecCCcCCcccCccc-cCCCCCcCEEeEec
Q 010426 423 TSLSYLNIIGFRNLKMLSSKG-FQSLTSLEFLWIDD 457 (511)
Q Consensus 423 ~~L~~L~l~~~~~l~~l~~~~-~~~l~~L~~L~l~~ 457 (511)
++|++|++++|. ++...... ...+|.++...+..
T Consensus 513 ~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 513 PSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp SSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred CccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 999999999999 77643222 24577777766665
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=7.2e-19 Score=181.97 Aligned_cols=153 Identities=23% Similarity=0.216 Sum_probs=104.3
Q ss_pred eeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCce
Q 010426 5 KHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNF 84 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~ 84 (511)
.++++|++++|.++.+|..+. ++|++|++++| .+..+|. .+++|++|++++|. ++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECc
Confidence 358999999999999998776 89999999999 7778887 57899999999999 888876 67888888876
Q ss_pred eeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhc
Q 010426 85 IVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLG 164 (511)
Q Consensus 85 ~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (511)
.+.+...+. ..++|+.|++++|.... +.
T Consensus 110 ~N~l~~l~~-----------------------------------~l~~L~~L~L~~N~l~~-----------------lp 137 (622)
T 3g06_A 110 SNPLTHLPA-----------------------------------LPSGLCKLWIFGNQLTS-----------------LP 137 (622)
T ss_dssp SCCCCCCCC-----------------------------------CCTTCCEEECCSSCCSC-----------------CC
T ss_pred CCcCCCCCC-----------------------------------CCCCcCEEECCCCCCCc-----------------CC
Confidence 665433211 11356666665551000 00
Q ss_pred CCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCc
Q 010426 165 KLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 165 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 229 (511)
..+++|++|++++|.+..+|. .+++|+.|++++|. +..+| ..+++|+.|++++|.
T Consensus 138 --~~l~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~-l~~l~--~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 138 --VLPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQ-LTSLP--MLPSGLQELSVSDNQ 192 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSC
T ss_pred --CCCCCCCEEECcCCcCCCcCC-----ccCCCCEEECCCCC-CCCCc--ccCCCCcEEECCCCC
Confidence 012567777777776665553 24567777777765 34454 445667777776655
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.5e-18 Score=177.87 Aligned_cols=195 Identities=25% Similarity=0.260 Sum_probs=107.6
Q ss_pred CCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCe
Q 010426 170 TSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLET 249 (511)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 249 (511)
++|++|++++|.+..+|. .+++|+.|++++|. +..+|. .+++|++|++++|. +..++
T Consensus 101 ~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~l~-------------- 157 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQ-LASLP-------------- 157 (622)
T ss_dssp TTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSCCC--------------
T ss_pred CCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCC-CCcCCC--CCCCCCEEECcCCc-CCCcC--------------
Confidence 466666666666655554 25677777777775 344443 23666777766654 11110
Q ss_pred EEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeecc
Q 010426 250 LWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIEN 329 (511)
Q Consensus 250 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 329 (511)
..+++|+.|+++++ .++ .++ ..+++|+.|++++| .++.++. .+++|+.|++++
T Consensus 158 ---------------------~~~~~L~~L~L~~N-~l~-~l~-~~~~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~ 210 (622)
T 3g06_A 158 ---------------------ALPSELCKLWAYNN-QLT-SLP-MLPSGLQELSVSDN-QLASLPT--LPSELYKLWAYN 210 (622)
T ss_dssp ---------------------CCCTTCCEEECCSS-CCS-CCC-CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS
T ss_pred ---------------------CccCCCCEEECCCC-CCC-CCc-ccCCCCcEEECCCC-CCCCCCC--ccchhhEEECcC
Confidence 12356677777663 444 344 44567777777764 3444432 234677777776
Q ss_pred CcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCc
Q 010426 330 CEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEA 409 (511)
Q Consensus 330 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 409 (511)
| .++.+|. .+++|++|++++| .++.++ ..+++|+.|+++ .+.++.++. .+++|+.|++++ | . +
T Consensus 211 N-~l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls---~N~L~~lp~----~~~~L~~L~Ls~-N-~-L 273 (622)
T 3g06_A 211 N-RLTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVS---GNRLTSLPM----LPSGLLSLSVYR-N-Q-L 273 (622)
T ss_dssp S-CCSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECC---SSCCSCCCC----CCTTCCEEECCS-S-C-C
T ss_pred C-cccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECC---CCCCCcCCc----ccccCcEEeCCC-C-C-C
Confidence 6 4445543 2366666777666 455544 344566666663 334443332 345566666666 2 2 4
Q ss_pred cccCcccccccCCCccceEeecCCc
Q 010426 410 ECFPDEEMGMMLPTSLSYLNIIGFR 434 (511)
Q Consensus 410 ~~~~~~~~~~~~~~~L~~L~l~~~~ 434 (511)
..+|. .+ ..+++|+.|++++|+
T Consensus 274 ~~lp~-~l--~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 274 TRLPE-SL--IHLSSETTVNLEGNP 295 (622)
T ss_dssp CSCCG-GG--GGSCTTCEEECCSCC
T ss_pred CcCCH-HH--hhccccCEEEecCCC
Confidence 45554 33 455566666666655
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=4e-20 Score=176.69 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=57.9
Q ss_pred eeccEeecCCCccc---cCCccccccccccEEeccC-ccccccccccccCcCccceEEecCcccccccCCcccCcCCCcc
Q 010426 5 KHLRYLNLSDTRIR---NLPKPTCSLINLQVLLLRD-CYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQA 80 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~---~l~~~~~~l~~L~~L~L~~-n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 80 (511)
.+++.|++++|.+. .+|..|+.+++|++|++++ |.....+|..++++++|++|++++|.....+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46777777777776 4677777777777777774 5455567777777777777777777722366666777777777
Q ss_pred CCceeeec
Q 010426 81 LSNFIVGT 88 (511)
Q Consensus 81 L~~~~~~~ 88 (511)
|+++.+.+
T Consensus 130 L~Ls~N~l 137 (313)
T 1ogq_A 130 LDFSYNAL 137 (313)
T ss_dssp EECCSSEE
T ss_pred EeCCCCcc
Confidence 77655543
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=2.7e-18 Score=172.25 Aligned_cols=240 Identities=20% Similarity=0.304 Sum_probs=158.1
Q ss_pred CCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCe
Q 010426 171 SIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLET 249 (511)
Q Consensus 171 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 249 (511)
..+.++..+.....+|..+ .++++.|++++|......+ .+..+++|++|++++|. +..+.. ..
T Consensus 44 ~~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~--~~--------- 107 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEI--GA--------- 107 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECG--GG---------
T ss_pred CCCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccCh--hh---------
Confidence 3556666777777777654 3688889998887433332 67888888888888876 232220 11
Q ss_pred EEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCC---CCCCCCCCEEEEEccCCcceecccCCC--CCcCe
Q 010426 250 LWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILP---LCKNSQLESLCIRYCDSLTFIARRKLP--SSLKW 324 (511)
Q Consensus 250 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~ 324 (511)
+..+++|++|+++++ +++ .++ ...+++|++|++++| .++.++...+. ++|++
T Consensus 108 --------------------~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 108 --------------------FNGLANLNTLELFDN-RLT-TIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp --------------------GTTCSSCCEEECCSS-CCS-SCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCE
T ss_pred --------------------ccCCccCCEEECCCC-cCC-eeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCE
Confidence 234455555555553 333 222 124556666666663 34444433322 47777
Q ss_pred EeeccCcccccccc-cccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEec
Q 010426 325 LEIENCEKLESLPN-DMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 325 L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
|++++|..+..++. .+..+++|++|++++| .++.++....+++|++|++ +.+.++.+.+..+.++++|+.|++++
T Consensus 165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDL---SGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp EECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEEC---TTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred eCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEEC---CCCccCccChhhhccCccCCEEECCC
Confidence 77777666666654 4677788888888888 6677776667778888888 55566666666778888888888888
Q ss_pred CCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 404 CDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
+. +..++...+ ..+++|++|++++|. ++.++...+..+++|+.|+|+++|
T Consensus 241 --n~-l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 241 --SQ-IQVIERNAF--DNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CC-CCEECTTSS--TTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --Cc-eeEEChhhh--cCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 33 666654233 567888888888887 777776677788888888888765
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=3.8e-18 Score=171.78 Aligned_cols=239 Identities=23% Similarity=0.298 Sum_probs=160.8
Q ss_pred CceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeE
Q 010426 172 IKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETL 250 (511)
Q Consensus 172 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 250 (511)
...++.++.....+|..+ .++++.|++++|......+ .+..+++|++|++++|. +..+.. ..
T Consensus 56 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~--~~---------- 118 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEV--GA---------- 118 (452)
T ss_dssp SCEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT--TT----------
T ss_pred CcEEEECCCCcCccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcCh--hh----------
Confidence 456666666677777544 3678888888887433333 67788888888888875 232220 11
Q ss_pred EcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCC---CCCCCCCCEEEEEccCCcceecccCCC--CCcCeE
Q 010426 251 WFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILP---LCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWL 325 (511)
Q Consensus 251 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L 325 (511)
+..+++|++|+++++ .++ .++ ...+++|++|++++| .++.++...+. ++|+.|
T Consensus 119 -------------------~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 119 -------------------FNGLASLNTLELFDN-WLT-VIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp -------------------TTTCTTCCEEECCSS-CCS-BCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred -------------------ccCcccCCEEECCCC-cCC-ccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEE
Confidence 233455555555553 333 222 124556666666664 34455443332 578888
Q ss_pred eeccCcccccccc-cccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecC
Q 010426 326 EIENCEKLESLPN-DMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGC 404 (511)
Q Consensus 326 ~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 404 (511)
++++|..++.++. .+..+++|++|++++| .++.++....+++|++|++ +.+.++.+.+..+.++++|+.|++++
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~L~~- 251 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEM---SGNHFPEIRPGSFHGLSSLKKLWVMN- 251 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEEC---TTSCCSEECGGGGTTCTTCCEEECTT-
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEEC---cCCcCcccCcccccCccCCCEEEeCC-
Confidence 8887767776655 4678888888888888 6777776677788888888 56677777677788888888888888
Q ss_pred CCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 405 DDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
+ . +..++...+ ..+++|++|++++|. ++.++...+..+++|+.|+|++|+
T Consensus 252 n-~-l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 252 S-Q-VSLIERNAF--DGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp S-C-CCEECTTTT--TTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred C-c-CceECHHHh--cCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 3 3 666654233 567888889998887 888876777888888888888865
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=2.2e-19 Score=172.59 Aligned_cols=199 Identities=20% Similarity=0.299 Sum_probs=154.7
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccC-------
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKE------- 74 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~------- 74 (511)
+++++|++|+|++|.|..+|..++.+++|++|++++| .+..+|..++++++|++|++++|.....+|..++.
T Consensus 101 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 4688999999999999999999999999999999999 67799999999999999999998868888877654
Q ss_pred --cCCCccCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCC
Q 010426 75 --LKNLQALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDD 152 (511)
Q Consensus 75 --l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 152 (511)
+++|++|+++++.+...|. .+..+++|+.|++++|...
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~--------------------------------~l~~l~~L~~L~L~~N~l~-------- 219 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPA--------------------------------SIANLQNLKSLKIRNSPLS-------- 219 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCG--------------------------------GGGGCTTCCEEEEESSCCC--------
T ss_pred ccCCCCCEEECcCCCcCcchH--------------------------------hhcCCCCCCEEEccCCCCC--------
Confidence 8888888877765543211 2445567888888777211
Q ss_pred CcchhhhhhhhcCCCCCCCCceEEEecCCC-ccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCcc
Q 010426 153 SRNESREELVLGKLKPCTSIKKLTIKGYGG-KKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRK 230 (511)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 230 (511)
.....+..+++|++|++++|.. ..+|..+. .+++|+.|++++|...+.+| .++.+++|++|++++|..
T Consensus 220 --------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 220 --------ALGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp --------CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT--CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred --------cCchhhccCCCCCEEECcCCcchhhhHHHhc--CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 1112355677888888888654 45565555 58889999999988888777 778889999999999887
Q ss_pred ceEeccCCCCCCCCCCCCeEEcCC
Q 010426 231 LKSMGYGEHCSNPFQSLETLWFED 254 (511)
Q Consensus 231 ~~~~~~~~~~~~~~~~L~~L~l~~ 254 (511)
...++ ..+..+++|+.+++..
T Consensus 290 ~~~iP---~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 290 LSRLP---SLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCC---GGGGGSCTTCEEECCG
T ss_pred hhhcc---HHHhhccCceEEeCCH
Confidence 77776 3445578888887764
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=7.9e-22 Score=199.55 Aligned_cols=83 Identities=20% Similarity=0.206 Sum_probs=61.3
Q ss_pred ceeccEeecCCCccccCC--ccccccccccEEeccCccccc-----cccccccCcCccceEEecCccccccc-CCcc-cC
Q 010426 4 WKHLRYLNLSDTRIRNLP--KPTCSLINLQVLLLRDCYYLL-----KLPSKLRNLINLRHLDIMGAYLIKEI-PFGM-KE 74 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~--~~~~~l~~L~~L~L~~n~~~~-----~l~~~~~~l~~L~~L~l~~~~~l~~l-~~~l-~~ 74 (511)
.++|++|++++|+++..+ ..+..+++|++|++++| .+. .++..+..+++|++|++++|. +... +..+ ..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 478999999999998553 33788999999999999 454 456667889999999999998 5432 2222 33
Q ss_pred cC----CCccCCceeeec
Q 010426 75 LK----NLQALSNFIVGT 88 (511)
Q Consensus 75 l~----~L~~L~~~~~~~ 88 (511)
++ +|++|+++++.+
T Consensus 80 l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp TCSTTCCCCEEECTTSCC
T ss_pred HhhCCCceeEEEccCCCC
Confidence 44 688887665543
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=169.53 Aligned_cols=268 Identities=16% Similarity=0.152 Sum_probs=145.6
Q ss_pred ceeccEeecCCCccccCCccccccccccEEeccCccccccccc-cccCcCccceEEecCcccccccCC-cccCcCCCccC
Q 010426 4 WKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPS-KLRNLINLRHLDIMGAYLIKEIPF-GMKELKNLQAL 81 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L 81 (511)
++...+.+.+++.++.+|.++. ++|++|++++| .+..+|. .++++++|++|++++|. +..++. .++.+++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEE
Confidence 3445567788888888887665 58888888888 5666664 67888888888888887 666653 47788888888
Q ss_pred CceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhh
Q 010426 82 SNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREEL 161 (511)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (511)
+++++.+... . ...+..+
T Consensus 106 ~Ls~n~l~~~----------~---------------------~~~~~~l------------------------------- 123 (353)
T 2z80_A 106 DLSYNYLSNL----------S---------------------SSWFKPL------------------------------- 123 (353)
T ss_dssp ECCSSCCSSC----------C---------------------HHHHTTC-------------------------------
T ss_pred ECCCCcCCcC----------C---------------------HhHhCCC-------------------------------
Confidence 7655543221 0 0012223
Q ss_pred hhcCCCCCCCCceEEEecCCCccCCc--ccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccC
Q 010426 162 VLGKLKPCTSIKKLTIKGYGGKKIPS--WIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYG 237 (511)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~ 237 (511)
++|++|+++++....++. .+. .+++|++|++++|..+..++ .++.+++|++|++++|......+
T Consensus 124 --------~~L~~L~L~~n~l~~l~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 191 (353)
T 2z80_A 124 --------SSLTFLNLLGNPYKTLGETSLFS--HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-- 191 (353)
T ss_dssp --------TTCSEEECTTCCCSSSCSSCSCT--TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT--
T ss_pred --------ccCCEEECCCCCCcccCchhhhc--cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH--
Confidence 344444454444444443 121 45566666666554333332 45555666666665554222211
Q ss_pred CCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccC
Q 010426 238 EHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRK 317 (511)
Q Consensus 238 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 317 (511)
..+..+++|++|++.++.. ..+. ......+++|+.|+++++ .+++ ++... +....
T Consensus 192 -~~l~~l~~L~~L~l~~n~l-~~~~----~~~~~~~~~L~~L~L~~n-~l~~-~~~~~-----------------l~~~~ 246 (353)
T 2z80_A 192 -KSLKSIQNVSHLILHMKQH-ILLL----EIFVDVTSSVECLELRDT-DLDT-FHFSE-----------------LSTGE 246 (353)
T ss_dssp -TTTTTCSEEEEEEEECSCS-TTHH----HHHHHHTTTEEEEEEESC-BCTT-CCCC-----------------------
T ss_pred -HHHhccccCCeecCCCCcc-ccch----hhhhhhcccccEEECCCC-cccc-ccccc-----------------ccccc
Confidence 2223344444444444321 1111 000224567777777774 3331 11110 00001
Q ss_pred CCCCcCeEeeccCcc----cccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEE
Q 010426 318 LPSSLKWLEIENCEK----LESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIR 375 (511)
Q Consensus 318 ~~~~L~~L~l~~~~~----l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~ 375 (511)
....++.+++.++.. +..+|..+..+++|++|++++| .++.++.. ..+++|++|++.
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 112444444444421 2245666777888888888888 56666653 456788888885
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1.9e-20 Score=189.45 Aligned_cols=375 Identities=15% Similarity=0.073 Sum_probs=212.9
Q ss_pred cccccEEeccCcccccccc--ccccCcCccceEEecCccccc-----ccCCcccCcCCCccCCceeeecCCCccCccccc
Q 010426 27 LINLQVLLLRDCYYLLKLP--SKLRNLINLRHLDIMGAYLIK-----EIPFGMKELKNLQALSNFIVGTDTKSSGLKDLK 99 (511)
Q Consensus 27 l~~L~~L~L~~n~~~~~l~--~~~~~l~~L~~L~l~~~~~l~-----~l~~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~ 99 (511)
.++|++|++++| .+...+ ..+..+++|++|++++|. +. .++..+..+++|++|+++++.+... ...
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-----~~~ 74 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDV-----GVH 74 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-----HHH
T ss_pred Cccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH-----HHH
Confidence 368999999998 554433 226789999999999998 65 4455577788888888765543211 000
Q ss_pred cccccCceEEEccccCCCChhhhHHhccccc-cccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEe
Q 010426 100 SLAFVGGELSISGLENVIYPWEASEAMLCEK-QYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIK 178 (511)
Q Consensus 100 ~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 178 (511)
.....+... .+|+.|++++|.. ...........+..+++|++|+++
T Consensus 75 ----------------------~l~~~l~~~~~~L~~L~L~~n~i-----------~~~~~~~l~~~l~~~~~L~~L~Ls 121 (461)
T 1z7x_W 75 ----------------------CVLQGLQTPSCKIQKLSLQNCCL-----------TGAGCGVLSSTLRTLPTLQELHLS 121 (461)
T ss_dssp ----------------------HHHHTTCSTTCCCCEEECTTSCC-----------BGGGHHHHHHHTTSCTTCCEEECC
T ss_pred ----------------------HHHHHHhhCCCceeEEEccCCCC-----------CHHHHHHHHHHHccCCceeEEECC
Confidence 000111111 1577777776610 000111223445566677777777
Q ss_pred cCCCccC-----CcccCCCCCCCccEEEEecCCCCCC----CC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCC
Q 010426 179 GYGGKKI-----PSWIADPSFSKMEVLGLENCENCTS----LP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLE 248 (511)
Q Consensus 179 ~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~----~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 248 (511)
++.+... ...+. ...++|++|++++|..... ++ .+..+++|++|++++|. +....
T Consensus 122 ~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~------------- 186 (461)
T 1z7x_W 122 DNLLGDAGLQLLCEGLL-DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAG------------- 186 (461)
T ss_dssp SSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHH-------------
T ss_pred CCcCchHHHHHHHHHHh-cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHH-------------
Confidence 7664321 11111 1234677777766652221 11 23344566666666554 11111
Q ss_pred eEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcC----CCC--CCCCCCCEEEEEccCCcceec-----ccC
Q 010426 249 TLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGI----LPL--CKNSQLESLCIRYCDSLTFIA-----RRK 317 (511)
Q Consensus 249 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~~~--~~~~~L~~L~l~~~~~l~~~~-----~~~ 317 (511)
... +........++|++|++++| .+++. ++. ..+++|+.|++++|. ++... ...
T Consensus 187 ---------~~~----l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 187 ---------VRV----LCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGL 251 (461)
T ss_dssp ---------HHH----HHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHH
T ss_pred ---------HHH----HHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHH
Confidence 000 00000012446677777665 23211 111 145677777777753 33321 111
Q ss_pred --CCCCcCeEeeccCccccc-----ccccccCCCCcCeEEecCCCCCcccCCC-------CCCCCCceEEEEeccccccc
Q 010426 318 --LPSSLKWLEIENCEKLES-----LPNDMHELNYLQHLCINRCPSIVRFPEE-------GFPTNLVELEIRRVDVKMYK 383 (511)
Q Consensus 318 --~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~l~ 383 (511)
-.++|++|++++| .++. ++..+..+++|++|++++| .+++.+.. ...++|++|++. .+.++
T Consensus 252 ~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~---~n~l~ 326 (461)
T 1z7x_W 252 LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVK---SCSFT 326 (461)
T ss_dssp TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECT---TSCCB
T ss_pred hcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcC---CCCCc
Confidence 1248999999998 4544 5667778899999999999 45432211 223689999995 33455
Q ss_pred ch----hhhhhccCCcccEEEEecCCCCCccccCcccc---cccCCCccceEeecCCcCCc-----ccCccccCCCCCcC
Q 010426 384 AI----IHWGLHRLTSLRRLWIEGCDDDEAECFPDEEM---GMMLPTSLSYLNIIGFRNLK-----MLSSKGFQSLTSLE 451 (511)
Q Consensus 384 ~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~l~~L~ 451 (511)
.. .+..+..+++|++|++++ + . +........ +....++|++|++++|. ++ .++ ..+..+++|+
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~-n-~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~-~~l~~~~~L~ 401 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISN-N-R-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA-ATLLANHSLR 401 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCS-S-B-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH-HHHHHCCCCC
T ss_pred hHHHHHHHHHHhhCCCccEEEccC-C-c-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH-HHHHhCCCcc
Confidence 43 234567789999999999 4 3 554432111 00125799999999998 77 455 6677899999
Q ss_pred EEeEecCCCCcccCC----C---CCCCcccEEEecCCc
Q 010426 452 FLWIDDCPNLTSFPE----A---GLPSSILWLNIWSCP 482 (511)
Q Consensus 452 ~L~l~~c~~l~~~~~----~---~~~~~L~~L~l~~c~ 482 (511)
+|++++| .++.... . ....+|+.|.+.++.
T Consensus 402 ~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 402 ELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp EEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred EEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 9999996 5554211 0 112468888887654
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=4.7e-18 Score=165.38 Aligned_cols=265 Identities=17% Similarity=0.141 Sum_probs=138.3
Q ss_pred CCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCCCCCCCC
Q 010426 170 TSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSL 247 (511)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 247 (511)
+.....+.+++....+|..+ .++|++|++++|. +..++ .+..+++|++|++++|. +..+.. ..+..+++|
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~----~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L 102 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGL----TEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INTIEE--DSFSSLGSL 102 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTC----CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECT--TTTTTCTTC
T ss_pred CCCeEeeCCCCCcccccccc----cccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCc-cCccCH--hhcCCCCCC
Confidence 34445666677777777644 3578888888876 34444 57788888888888775 333321 234446777
Q ss_pred CeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCC----CCCCCCCEEEEEccCCcceecccCCC--CC
Q 010426 248 ETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPL----CKNSQLESLCIRYCDSLTFIARRKLP--SS 321 (511)
Q Consensus 248 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~--~~ 321 (511)
++|+++++..- .+. ...+..+++|++|+++++ .++ .++. ..+++|+.|++++|..++.+....+. ++
T Consensus 103 ~~L~Ls~n~l~-~~~----~~~~~~l~~L~~L~L~~n-~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 103 EHLDLSYNYLS-NLS----SSWFKPLSSLTFLNLLGN-PYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp CEEECCSSCCS-SCC----HHHHTTCTTCSEEECTTC-CCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CEEECCCCcCC-cCC----HhHhCCCccCCEEECCCC-CCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 77777765321 111 111245677777777774 444 2322 35667777777776555555433222 46
Q ss_pred cCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhh---hhccCCcc
Q 010426 322 LKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHW---GLHRLTSL 396 (511)
Q Consensus 322 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~---~~~~l~~L 396 (511)
|++|++++|......|..+..+++|++|++++| .++.++.. ..+++|+.|+++ .+.++..... .....+.+
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~---~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELR---DTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEE---SCBCTTCCCC------CCCCC
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECC---CCccccccccccccccccchh
Confidence 666666666433333555566666666666666 33333321 224556666664 2222222111 11234445
Q ss_pred cEEEEecCCCCC---ccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecC
Q 010426 397 RRLWIEGCDDDE---AECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDC 458 (511)
Q Consensus 397 ~~L~l~~~~~~~---~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 458 (511)
+.+++++ .... +..+|. .+ ..+++|++|++++|. ++.+|...+..+++|++|++++|
T Consensus 252 ~~l~L~~-~~l~~~~l~~l~~-~l--~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 252 KKFTFRN-VKITDESLFQVMK-LL--NQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CEEEEES-CBCCHHHHHHHHH-HH--HTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred hcccccc-ccccCcchhhhHH-HH--hcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCC
Confidence 5555555 2110 111221 11 345556666666655 55555333455566666666554
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.3e-20 Score=178.82 Aligned_cols=196 Identities=12% Similarity=0.142 Sum_probs=126.8
Q ss_pred CCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCC--CCCcCeEeeccCcccccccccc-cCCCCcCeEE
Q 010426 274 SSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKL--PSSLKWLEIENCEKLESLPNDM-HELNYLQHLC 350 (511)
Q Consensus 274 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~ 350 (511)
++|++|+++++ .+. .++...+++|+.|++++| .++.+....+ .++|++|++++|......+..+ ..+++|++|+
T Consensus 99 ~~L~~L~l~~n-~l~-~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANN-NIS-RVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSS-CCS-EEEECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCC-ccC-CcCccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 56666666663 333 223334566777777664 3444433222 1588888888884433334444 4788999999
Q ss_pred ecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEee
Q 010426 351 INRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNI 430 (511)
Q Consensus 351 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 430 (511)
+++| .++.++....+++|++|++ +.+.++.+++ .+..+++|+.|++++ + . ++.+|. .+ ..+++|+.|++
T Consensus 176 L~~N-~l~~~~~~~~l~~L~~L~L---s~N~l~~l~~-~~~~l~~L~~L~L~~-N-~-l~~l~~-~~--~~l~~L~~L~l 244 (317)
T 3o53_A 176 LQYN-FIYDVKGQVVFAKLKTLDL---SSNKLAFMGP-EFQSAAGVTWISLRN-N-K-LVLIEK-AL--RFSQNLEHFDL 244 (317)
T ss_dssp CTTS-CCCEEECCCCCTTCCEEEC---CSSCCCEECG-GGGGGTTCSEEECTT-S-C-CCEECT-TC--CCCTTCCEEEC
T ss_pred CCCC-cCcccccccccccCCEEEC---CCCcCCcchh-hhcccCcccEEECcC-C-c-ccchhh-Hh--hcCCCCCEEEc
Confidence 9998 6777766666888999999 4556666554 377888999999998 3 4 777776 44 56788999999
Q ss_pred cCCcCCc--ccCccccCCCCCcCEEeEecCCCCcccCCCCC-CCcccEEEecCCcchH
Q 010426 431 IGFRNLK--MLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL-PSSILWLNIWSCPKLE 485 (511)
Q Consensus 431 ~~~~~l~--~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~ 485 (511)
++|+ +. .++ ..+..+++|+.|++.+++.++....... .+......-..|..+.
T Consensus 245 ~~N~-~~~~~~~-~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 245 RGNG-FHCGTLR-DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp TTCC-CBHHHHH-HHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred cCCC-ccCcCHH-HHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 9988 65 344 6677888888888887766665432211 2233333344566654
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.7e-19 Score=172.80 Aligned_cols=256 Identities=13% Similarity=0.105 Sum_probs=156.8
Q ss_pred eccEeecCCCccccCC-ccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCCcccCcCCCccCCc
Q 010426 6 HLRYLNLSDTRIRNLP-KPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSN 83 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~ 83 (511)
+++.++++.+.+...+ ..+..+++|++|++++| .+..++ ..++.+++|++|++++|. +...++ ++.+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEEC
Confidence 4667778888877554 33667789999999999 555554 678999999999999998 655543 778888888876
Q ss_pred eeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhh
Q 010426 84 FIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVL 163 (511)
Q Consensus 84 ~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (511)
+++.+...
T Consensus 88 s~n~l~~l------------------------------------------------------------------------ 95 (317)
T 3o53_A 88 NNNYVQEL------------------------------------------------------------------------ 95 (317)
T ss_dssp CSSEEEEE------------------------------------------------------------------------
T ss_pred cCCccccc------------------------------------------------------------------------
Confidence 55432111
Q ss_pred cCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCC
Q 010426 164 GKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSN 242 (511)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 242 (511)
...++|+.|+++++.+..++.. .+++|+.|++++|......+ .++.+++|++|++++|.. ..+..
T Consensus 96 ---~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~------ 161 (317)
T 3o53_A 96 ---LVGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNF------ 161 (317)
T ss_dssp ---EECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC-CEEEG------
T ss_pred ---cCCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC-CcccH------
Confidence 0013455555555554443321 35678888888887433333 566778888888877652 21110
Q ss_pred CCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCc
Q 010426 243 PFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSL 322 (511)
Q Consensus 243 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L 322 (511)
.. + ...+++|++|++++| .++ .++.....++|
T Consensus 162 ----------------~~----~----~~~l~~L~~L~L~~N-~l~-----------------------~~~~~~~l~~L 193 (317)
T 3o53_A 162 ----------------AE----L----AASSDTLEHLNLQYN-FIY-----------------------DVKGQVVFAKL 193 (317)
T ss_dssp ----------------GG----G----GGGTTTCCEEECTTS-CCC-----------------------EEECCCCCTTC
T ss_pred ----------------HH----H----hhccCcCCEEECCCC-cCc-----------------------ccccccccccC
Confidence 00 0 123566777777664 222 11111122367
Q ss_pred CeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC-CCCCCCceEEEEeccccccc-chhhhhhccCCcccEEE
Q 010426 323 KWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE-GFPTNLVELEIRRVDVKMYK-AIIHWGLHRLTSLRRLW 400 (511)
Q Consensus 323 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~l~-~~~~~~~~~l~~L~~L~ 400 (511)
++|++++| .++.+|..+..+++|++|++++| .++.++.. ..+++|+.|++ +.+.+. +..+..+..+++|+.++
T Consensus 194 ~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l---~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 194 KTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDL---RGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEEC---TTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred CEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEc---cCCCccCcCHHHHHhccccceEEE
Confidence 77777776 55556666777777788888777 55555443 45567777777 344444 33444566667777766
Q ss_pred Eec
Q 010426 401 IEG 403 (511)
Q Consensus 401 l~~ 403 (511)
+++
T Consensus 269 l~~ 271 (317)
T 3o53_A 269 KQT 271 (317)
T ss_dssp HHH
T ss_pred CCC
Confidence 665
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=4.6e-21 Score=200.37 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=8.5
Q ss_pred ccccccccEEeccCcc
Q 010426 24 TCSLINLQVLLLRDCY 39 (511)
Q Consensus 24 ~~~l~~L~~L~L~~n~ 39 (511)
+..+++|+.|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~ 77 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKP 77 (594)
T ss_dssp HHHCTTCCEEEEECSC
T ss_pred HhhCCCceEEeccCCC
Confidence 3445555555555553
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=9e-21 Score=198.17 Aligned_cols=414 Identities=17% Similarity=0.139 Sum_probs=222.9
Q ss_pred CceeccEeecCCCc-ccc---CCcc------------ccccccccEEeccCcccccccccccc-CcCccceEEecCcccc
Q 010426 3 GWKHLRYLNLSDTR-IRN---LPKP------------TCSLINLQVLLLRDCYYLLKLPSKLR-NLINLRHLDIMGAYLI 65 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~-i~~---l~~~------------~~~l~~L~~L~L~~n~~~~~l~~~~~-~l~~L~~L~l~~~~~l 65 (511)
++++|++|+++++. +.. .|.. +..+++|++|++++|......+..+. .+++|++|++++|..+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 56788999998764 221 2221 34678899999999843333344454 6889999999988535
Q ss_pred cc--cCCcccCcCCCccCCceeeecCCCc-cCcc----ccccccccCceEEEccccCCCChhhhHHhccccccccceeEE
Q 010426 66 KE--IPFGMKELKNLQALSNFIVGTDTKS-SGLK----DLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSL 138 (511)
Q Consensus 66 ~~--l~~~l~~l~~L~~L~~~~~~~~~~~-~~~~----~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 138 (511)
.. ++..+..+++|++|++.++.+.... ..+. .+.+|+ .+.+.... ..............+++|+.|++
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~----~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV----SLNISCLA-SEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC----EEECTTCC-SCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc----EEEecccC-CcCCHHHHHHHHHhCCCCcEEec
Confidence 44 3333557889999988777643320 1121 222333 33332222 01112223333345789999999
Q ss_pred eeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCC-------ccCCcccCCCCCCCccEE-EEecCCCCCC
Q 010426 139 QWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGG-------KKIPSWIADPSFSKMEVL-GLENCENCTS 210 (511)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~ 210 (511)
++| . .. ......+..+++|++|++..+.. ..++..+. .+++|+.+ .+.+.. ...
T Consensus 219 ~~~------~-----~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~--~~~~L~~Ls~~~~~~-~~~ 280 (594)
T 2p1m_B 219 NRA------V-----PL----EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS--GCKELRCLSGFWDAV-PAY 280 (594)
T ss_dssp CTT------S-----CH----HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH--TCTTCCEEECCBTCC-GGG
T ss_pred CCC------C-----cH----HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh--cCCCcccccCCcccc-hhh
Confidence 776 1 11 11222344567888888765432 11222232 57778877 232221 112
Q ss_pred CC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccC-----
Q 010426 211 LP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNC----- 284 (511)
Q Consensus 211 ~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c----- 284 (511)
++ .+..+++|++|++++|. +....+. .....+++|+.|++.++ +.... +. .....+++|++|++.+|
T Consensus 281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~--l~-~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYAT-VQSYDLV-KLLCQCPKLQRLWVLDY--IEDAG--LE-VLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCC-CCHHHHH-HHHTTCTTCCEEEEEGG--GHHHH--HH-HHHHHCTTCCEEEEECSCTTCS
T ss_pred HHHHHHhhCCCCEEEccCCC-CCHHHHH-HHHhcCCCcCEEeCcCc--cCHHH--HH-HHHHhCCCCCEEEEecCccccc
Confidence 22 22356888888888887 4332110 11234788888888876 22111 00 00134788888888543
Q ss_pred ---CCcCcCCC---CCCCCCCCEEEEEccCCcceecccCC---CCCcCeEeec-----cCccccccc------ccccCCC
Q 010426 285 ---SKFSGILP---LCKNSQLESLCIRYCDSLTFIARRKL---PSSLKWLEIE-----NCEKLESLP------NDMHELN 344 (511)
Q Consensus 285 ---~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~L~~L~l~-----~~~~l~~l~------~~~~~~~ 344 (511)
..+++... ...+++|+.|.+.. +.++......+ .++|+.|+++ +|..++..| ..+..++
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC
Confidence 23221100 01367888885544 44443322111 1478888888 445555332 2356778
Q ss_pred CcCeEEecCCCCCcccCCC---CCCCCCceEEEEecccccccchhhhhh-ccCCcccEEEEecCCCCCccccCccccccc
Q 010426 345 YLQHLCINRCPSIVRFPEE---GFPTNLVELEIRRVDVKMYKAIIHWGL-HRLTSLRRLWIEGCDDDEAECFPDEEMGMM 420 (511)
Q Consensus 345 ~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 420 (511)
+|++|++++ .+++.... ..+++|+.|++. +| .+++.....+ .++++|+.|++++ |. ++.... ..+..
T Consensus 433 ~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~--~~-~i~~~~~~~l~~~~~~L~~L~L~~-n~--~~~~~~-~~~~~ 503 (594)
T 2p1m_B 433 DLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVA--FA-GDSDLGMHHVLSGCDSLRKLEIRD-CP--FGDKAL-LANAS 503 (594)
T ss_dssp TCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEE--SC-CSSHHHHHHHHHHCTTCCEEEEES-CS--CCHHHH-HHTGG
T ss_pred CccEEeecC--cccHHHHHHHHHhchhccEeecc--CC-CCcHHHHHHHHhcCCCcCEEECcC-CC--CcHHHH-HHHHH
Confidence 888888865 33332111 126778888885 33 3544333333 5678888888888 43 322221 11113
Q ss_pred CCCccceEeecCCcCCcccCcccc-CCCCCcCEEeEec
Q 010426 421 LPTSLSYLNIIGFRNLKMLSSKGF-QSLTSLEFLWIDD 457 (511)
Q Consensus 421 ~~~~L~~L~l~~~~~l~~l~~~~~-~~l~~L~~L~l~~ 457 (511)
.+++|++|++++|+ ++.-....+ ..+|.|+...+..
T Consensus 504 ~l~~L~~L~l~~~~-~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 504 KLETMRSLWMSSCS-VSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp GGGGSSEEEEESSC-CBHHHHHHHHHHCTTEEEEEECS
T ss_pred hCCCCCEEeeeCCC-CCHHHHHHHHHhCCCCEEEEecC
Confidence 46788888888887 432111222 3456666555554
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.9e-17 Score=166.10 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=41.1
Q ss_pred cEeecCCCccccCCccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCC-cccCcCCCccCCcee
Q 010426 8 RYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPF-GMKELKNLQALSNFI 85 (511)
Q Consensus 8 r~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~~~~ 85 (511)
+.++.++..+..+|..+. +++++|+|++| .+..++ ..+.++++|++|++++|. +..++. .+..+++|++|++++
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCC
Confidence 445555555666665444 55666666666 343333 445666666666666665 544442 255555555555443
Q ss_pred e
Q 010426 86 V 86 (511)
Q Consensus 86 ~ 86 (511)
+
T Consensus 122 n 122 (440)
T 3zyj_A 122 N 122 (440)
T ss_dssp S
T ss_pred C
Confidence 3
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.7e-17 Score=167.09 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=42.9
Q ss_pred cEeecCCCccccCCccccccccccEEeccCccccccc-cccccCcCccceEEecCcccccccC-CcccCcCCCccCCcee
Q 010426 8 RYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEIP-FGMKELKNLQALSNFI 85 (511)
Q Consensus 8 r~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~~~~ 85 (511)
+.++.++..+..+|..+. +++++|+|++| .+..+ |..|+++++|++|++++|. +..++ ..+..+++|++|++++
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCC
Confidence 455555666666665443 56666666666 33333 3456666666666666666 54444 2355566666665444
Q ss_pred e
Q 010426 86 V 86 (511)
Q Consensus 86 ~ 86 (511)
+
T Consensus 133 n 133 (452)
T 3zyi_A 133 N 133 (452)
T ss_dssp S
T ss_pred C
Confidence 3
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.8e-17 Score=157.99 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=39.4
Q ss_pred CceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCc
Q 010426 172 IKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 172 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~ 229 (511)
.+.++.++.+...+|..+ .+++++|++++|. +..++ .++.+++|++|++++|.
T Consensus 9 ~~~l~c~~~~l~~ip~~~----~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~ 63 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI----PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNG 63 (306)
T ss_dssp TTEEECCSSCCSSCCSCC----CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEcCCCCcccCCCCC----CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCc
Confidence 346677777777777644 4689999999887 45665 36788999999998876
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=6.6e-18 Score=161.26 Aligned_cols=244 Identities=16% Similarity=0.159 Sum_probs=134.1
Q ss_pred CCCceEEEecCCCc---cCCcccCCCCCCCccEEEEec-CCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCC
Q 010426 170 TSIKKLTIKGYGGK---KIPSWIADPSFSKMEVLGLEN-CENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPF 244 (511)
Q Consensus 170 ~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 244 (511)
.+++.|+++++... .+|..+. .+++|++|++++ |...+.+| .++.+++|++|++++|.....++ ..+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p---~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP---DFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC---GGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC---HHHhCC
Confidence 46777777777665 3555554 577777777774 55444555 56777777777777766332332 112224
Q ss_pred CCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCC--CCCCCCCEEEEEccCCcceeccc--CCCC
Q 010426 245 QSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPL--CKNSQLESLCIRYCDSLTFIARR--KLPS 320 (511)
Q Consensus 245 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~--~~~~ 320 (511)
++|++|+++++. +.+.+|. ..+++|++|++++|.....++.. .+++
T Consensus 125 ~~L~~L~Ls~N~------------------------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 174 (313)
T 1ogq_A 125 KTLVTLDFSYNA------------------------------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174 (313)
T ss_dssp TTCCEEECCSSE------------------------------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred CCCCEEeCCCCc------------------------------cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhh
Confidence 444444444432 2212221 13444444444443221122211 1223
Q ss_pred CcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEecccccccchhhhhhccCCcccE
Q 010426 321 SLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRR 398 (511)
Q Consensus 321 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~ 398 (511)
+|++|++++|.....+|..+..++ |++|++++| .++.... ...+++|+.|++ +.+.++...+ .+..+++|++
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L---~~N~l~~~~~-~~~~l~~L~~ 248 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHL---AKNSLAFDLG-KVGLSKNLNG 248 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEEC---CSSEECCBGG-GCCCCTTCCE
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEEC---CCCceeeecC-cccccCCCCE
Confidence 666666666644445566666555 777777766 3332221 144566777777 3444443333 2566777777
Q ss_pred EEEecCCCCCcc-ccCcccccccCCCccceEeecCCcCCc-ccCccccCCCCCcCEEeEecCCCCcc
Q 010426 399 LWIEGCDDDEAE-CFPDEEMGMMLPTSLSYLNIIGFRNLK-MLSSKGFQSLTSLEFLWIDDCPNLTS 463 (511)
Q Consensus 399 L~l~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~l~~L~~L~l~~c~~l~~ 463 (511)
|++++ +. +. .+|. .+ ..+++|++|++++|. ++ .+| .. ..+++|+.+++.+++.+..
T Consensus 249 L~Ls~-N~--l~~~~p~-~l--~~l~~L~~L~Ls~N~-l~~~ip-~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 249 LDLRN-NR--IYGTLPQ-GL--TQLKFLHSLNVSFNN-LCGEIP-QG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCS-SC--CEECCCG-GG--GGCTTCCEEECCSSE-EEEECC-CS-TTGGGSCGGGTCSSSEEES
T ss_pred EECcC-Cc--ccCcCCh-HH--hcCcCCCEEECcCCc-ccccCC-CC-ccccccChHHhcCCCCccC
Confidence 77777 33 44 4443 33 566777888888777 55 555 32 6677777788877765543
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=8.6e-19 Score=167.43 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=48.8
Q ss_pred cCCCcCeeeeccCCCcCcCCCC---CCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCe
Q 010426 272 GFSSLRELSILNCSKFSGILPL---CKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQH 348 (511)
Q Consensus 272 ~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 348 (511)
.+++|++|+++++ .+++..+. ..+++|+.|++++| .++.++.... ++|++|++++| .++.+|. +..+++|++
T Consensus 226 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 226 ARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSYN-RLDRNPS-PDELPQVGN 300 (312)
T ss_dssp TTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC-SEEEEEECCSS-CCCSCCC-TTTSCEEEE
T ss_pred cCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc-CCceEEECCCC-CCCCChh-HhhCCCCCE
Confidence 5678888888884 45533321 23567777777774 3445544322 57777777777 5555554 667777777
Q ss_pred EEecCC
Q 010426 349 LCINRC 354 (511)
Q Consensus 349 L~l~~~ 354 (511)
|++++|
T Consensus 301 L~L~~N 306 (312)
T 1wwl_A 301 LSLKGN 306 (312)
T ss_dssp EECTTC
T ss_pred EeccCC
Confidence 777777
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=6.1e-18 Score=161.21 Aligned_cols=242 Identities=18% Similarity=0.085 Sum_probs=141.2
Q ss_pred cEeecCCCccccCCccccccccccEEeccCcccccccccc-ccCcCccceEEecCccccccc---CCcccCcCCCccCCc
Q 010426 8 RYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSK-LRNLINLRHLDIMGAYLIKEI---PFGMKELKNLQALSN 83 (511)
Q Consensus 8 r~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l---~~~l~~l~~L~~L~~ 83 (511)
+.++.+++.+..+|..+. ++|++|++++| .+..+|.. ++++++|++|++++|. +..+ +..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEEC
Confidence 456777777777776543 57777777777 56666643 5777777777777776 5433 344556777777776
Q ss_pred eeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhh
Q 010426 84 FIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVL 163 (511)
Q Consensus 84 ~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (511)
+++.+...+. .+..+++|+.|++++|.... ....
T Consensus 86 s~n~i~~l~~--------------------------------~~~~l~~L~~L~l~~n~l~~--------------~~~~ 119 (306)
T 2z66_A 86 SFNGVITMSS--------------------------------NFLGLEQLEHLDFQHSNLKQ--------------MSEF 119 (306)
T ss_dssp CSCSEEEEEE--------------------------------EEETCTTCCEEECTTSEEES--------------STTT
T ss_pred CCCccccChh--------------------------------hcCCCCCCCEEECCCCcccc--------------cccc
Confidence 6554322111 12233456666665541100 0011
Q ss_pred cCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCC-CCC-CCCCCCCccEEEecCCccceEeccCCCCC
Q 010426 164 GKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCT-SLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCS 241 (511)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 241 (511)
..+..+++|++|+++++.....+.... ..+++|++|++++|...+ ..+ .+..+++|++|++++|......+ ..+
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~ 195 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---TAF 195 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---TTT
T ss_pred hhhhhccCCCEEECCCCcCCccchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH---HHh
Confidence 244556677777777776654432222 146777777777776433 233 56677777777777775332222 334
Q ss_pred CCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCC--CCC-CCCCEEEEEccCC
Q 010426 242 NPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPL--CKN-SQLESLCIRYCDS 309 (511)
Q Consensus 242 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~-~~L~~L~l~~~~~ 309 (511)
..+++|+.|++.++.... + .......+++|+.|+++++ .+.+..+. ..+ ++|+.|++++|+.
T Consensus 196 ~~l~~L~~L~L~~N~l~~-~----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFS-L----DTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCTTCCEEECTTSCCSB-C----CSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cCCCCCCEEECCCCccCc-c----ChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCCe
Confidence 456777777777764211 1 1111356788999999885 45433332 234 4899999988653
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=8.4e-17 Score=151.60 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=61.9
Q ss_pred cEeecCCCccccCCccccccccccEEeccCcccccccc-ccccCcCccceEEecCccccccc-CCcccCcCCCccCCcee
Q 010426 8 RYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEI-PFGMKELKNLQALSNFI 85 (511)
Q Consensus 8 r~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~~~~ 85 (511)
++++.+++.+..+|.++ .++|++|++++| .+..++ ..++.+++|++|++++|. +..+ |..++.+++|++|+++.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCC
Confidence 57888999999998755 479999999999 666666 568999999999999998 7666 45688899999888766
Q ss_pred ee
Q 010426 86 VG 87 (511)
Q Consensus 86 ~~ 87 (511)
+.
T Consensus 90 n~ 91 (285)
T 1ozn_A 90 NA 91 (285)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=5.1e-16 Score=146.17 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=33.6
Q ss_pred ceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCc
Q 010426 173 KKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 173 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~ 229 (511)
+.++.++.+...+|..+ .+++++|++++|.. ..++ .++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~----~~~l~~L~l~~n~i-~~~~~~~~~~~~~L~~L~l~~n~ 67 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI----PAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNV 67 (285)
T ss_dssp CEEECCSSCCSSCCTTC----CTTCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSC
T ss_pred eEEEcCcCCcccCCcCC----CCCceEEEeeCCcC-CccCHHHcccCCCCCEEECCCCc
Confidence 45566666666666433 45788888887763 3333 46777777777777765
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=3e-16 Score=143.69 Aligned_cols=199 Identities=17% Similarity=0.184 Sum_probs=151.4
Q ss_pred CCcCeeeeccCCCcCcCCC--CCCCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCccccccc-ccccCCCCcCe
Q 010426 274 SSLRELSILNCSKFSGILP--LCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLP-NDMHELNYLQH 348 (511)
Q Consensus 274 ~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~ 348 (511)
+++++|+++++ +++...+ ...+++|++|++++|..++.++...+. ++|++|++++|..++.++ ..+..+++|++
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 46778888774 4552222 235788888888886557777654332 589999999844666665 46788999999
Q ss_pred EEecCCCCCcccCCCCCCCCCc---eEEEEecccccccchhhhhhccCCccc-EEEEecCCCCCccccCcccccccCCCc
Q 010426 349 LCINRCPSIVRFPEEGFPTNLV---ELEIRRVDVKMYKAIIHWGLHRLTSLR-RLWIEGCDDDEAECFPDEEMGMMLPTS 424 (511)
Q Consensus 349 L~l~~~~~l~~~~~~~~~~~L~---~L~l~~~~~~~l~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (511)
|++++| .++.++....+++|+ .|+++ ++..++.+++..+.++++|+ .|++++ +. ++.++. ..+ ..++
T Consensus 110 L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~--~N~~l~~i~~~~~~~l~~L~~~L~l~~--n~-l~~i~~-~~~--~~~~ 180 (239)
T 2xwt_C 110 LGIFNT-GLKMFPDLTKVYSTDIFFILEIT--DNPYMTSIPVNAFQGLCNETLTLKLYN--NG-FTSVQG-YAF--NGTK 180 (239)
T ss_dssp EEEEEE-CCCSCCCCTTCCBCCSEEEEEEE--SCTTCCEECTTTTTTTBSSEEEEECCS--CC-CCEECT-TTT--TTCE
T ss_pred EeCCCC-CCccccccccccccccccEEECC--CCcchhhcCcccccchhcceeEEEcCC--CC-CcccCH-hhc--CCCC
Confidence 999999 577777666677777 99996 44477777777789999999 999999 34 778886 332 2379
Q ss_pred cceEeecCCcCCcccCccccCCC-CCcCEEeEecCCCCcccCCCCCCCcccEEEecCCcch
Q 010426 425 LSYLNIIGFRNLKMLSSKGFQSL-TSLEFLWIDDCPNLTSFPEAGLPSSILWLNIWSCPKL 484 (511)
Q Consensus 425 L~~L~l~~~~~l~~l~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l 484 (511)
|++|++++|+.++.++...+..+ ++|++|++++ +.++.+|... +++|++|++.++..|
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~~-~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKG-LEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCTT-CTTCSEEECTTC---
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChhH-hccCceeeccCccCC
Confidence 99999999966999987788999 9999999999 6888888764 489999999998764
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2.9e-17 Score=166.35 Aligned_cols=235 Identities=14% Similarity=0.154 Sum_probs=151.1
Q ss_pred CCCCCCCceEEEecCCCccCCc-ccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEeccCCCCCCCC
Q 010426 166 LKPCTSIKKLTIKGYGGKKIPS-WIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPF 244 (511)
Q Consensus 166 l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 244 (511)
...+++|+.|+++++.+..++. .+. .+++|++|++++|.. ...+.++.+++|++|++++|. +..++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N~-l~~l~--------- 96 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNY-VQELL--------- 96 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCC-EEEEECTTCTTCCEEECCSSE-EEEEE---------
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCC-CCCcccccCCCCCEEEecCCc-CCCCC---------
Confidence 3344567777777776655542 332 466677777776653 222235666666666666654 22221
Q ss_pred CCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCC--CCCc
Q 010426 245 QSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKL--PSSL 322 (511)
Q Consensus 245 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L 322 (511)
..++|+.|++++| .+. .++...+++|+.|++++|. ++.+.+..+ .++|
T Consensus 97 ---------------------------~~~~L~~L~L~~N-~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 146 (487)
T 3oja_A 97 ---------------------------VGPSIETLHAANN-NIS-RVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRV 146 (487)
T ss_dssp ---------------------------ECTTCCEEECCSS-CCC-CEEECCCSSCEEEECCSSC-CCSGGGBCGGGGSSE
T ss_pred ---------------------------CCCCcCEEECcCC-cCC-CCCccccCCCCEEECCCCC-CCCCCchhhcCCCCC
Confidence 1255666666553 333 2233345667777776643 333332222 2488
Q ss_pred CeEeeccCccccccccccc-CCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEE
Q 010426 323 KWLEIENCEKLESLPNDMH-ELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWI 401 (511)
Q Consensus 323 ~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l 401 (511)
+.|++++|......|..+. .+++|++|++++| .++.++....+++|+.|++ +.+.++++++ .+..+++|+.|++
T Consensus 147 ~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L---s~N~l~~~~~-~~~~l~~L~~L~L 221 (487)
T 3oja_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDL---SSNKLAFMGP-EFQSAAGVTWISL 221 (487)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEEC---CSSCCCEECG-GGGGGTTCSEEEC
T ss_pred CEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccccccCCCCCEEEC---CCCCCCCCCH-hHcCCCCccEEEe
Confidence 8999998854444555554 7899999999999 5777766667889999999 5566666655 3778899999999
Q ss_pred ecCCCCCccccCcccccccCCCccceEeecCCcCCc--ccCccccCCCCCcCEEeEe
Q 010426 402 EGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLK--MLSSKGFQSLTSLEFLWID 456 (511)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~l~~L~~L~l~ 456 (511)
++ +. +..+|. .+ ..+++|+.|++++|+ +. .++ ..+..++.|+.+++.
T Consensus 222 s~--N~-l~~lp~-~l--~~l~~L~~L~l~~N~-l~c~~~~-~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 222 RN--NK-LVLIEK-AL--RFSQNLEHFDLRGNG-FHCGTLR-DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TT--SC-CCEECT-TC--CCCTTCCEEECTTCC-BCHHHHH-HHHTTCHHHHHHHHH
T ss_pred cC--Cc-Ccccch-hh--ccCCCCCEEEcCCCC-CcCcchH-HHHHhCCCCcEEecc
Confidence 98 33 777776 44 567889999999988 55 444 566777888877775
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=6.4e-16 Score=145.57 Aligned_cols=196 Identities=17% Similarity=0.228 Sum_probs=127.5
Q ss_pred ccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCcccccccccccCCCCcCe
Q 010426 271 AGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLPNDMHELNYLQH 348 (511)
Q Consensus 271 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 348 (511)
..+++++++++++ +.++ .+|....++++.|++++| .++.+....+. ++|++|++++| .++.++.. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~-~~l~-~ip~~~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDK-RNLT-ALPPDLPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTT-SCCS-SCCSCCCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCC-CCCC-cCCCCCCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 3456667777666 4555 555555567777777774 34444432222 47777777777 45555443 67777788
Q ss_pred EEecCCCCCcccCCC-CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccce
Q 010426 349 LCINRCPSIVRFPEE-GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSY 427 (511)
Q Consensus 349 L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 427 (511)
|++++| .++.++.. ..+++|++|++ +.+.++.+++..+.++++|++|++++ +. +..++...+ ..+++|++
T Consensus 82 L~Ls~N-~l~~l~~~~~~l~~L~~L~l---~~N~l~~l~~~~~~~l~~L~~L~L~~--N~-l~~~~~~~~--~~l~~L~~ 152 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLLGQTLPALTVLDV---SFNRLTSLPLGALRGLGELQELYLKG--NE-LKTLPPGLL--TPTPKLEK 152 (290)
T ss_dssp EECCSS-CCSSCCCCTTTCTTCCEEEC---CSSCCCCCCSSTTTTCTTCCEEECTT--SC-CCCCCTTTT--TTCTTCCE
T ss_pred EECCCC-cCCcCchhhccCCCCCEEEC---CCCcCcccCHHHHcCCCCCCEEECCC--CC-CCccChhhc--ccccCCCE
Confidence 888777 55555543 45677777777 55566666666677778888888887 33 666664122 45677888
Q ss_pred EeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC-CCcccEEEecCCc
Q 010426 428 LNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL-PSSILWLNIWSCP 482 (511)
Q Consensus 428 L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~ 482 (511)
|++++|. ++.++...+..+++|+.|++++ +.++.+|...+ .++|++++++++|
T Consensus 153 L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 153 LSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EECTTSC-CSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred EECCCCc-CCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 8888877 7777755667778888888877 46666665332 3567788877644
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.7e-16 Score=145.38 Aligned_cols=82 Identities=27% Similarity=0.342 Sum_probs=45.4
Q ss_pred eccEeecCCCccccCCc-cccccccccEEeccCccccccccc-cccCcCccceEEecC-cccccccCCc-ccCcCCCccC
Q 010426 6 HLRYLNLSDTRIRNLPK-PTCSLINLQVLLLRDCYYLLKLPS-KLRNLINLRHLDIMG-AYLIKEIPFG-MKELKNLQAL 81 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~l~~-~~~~l~~L~~L~l~~-~~~l~~l~~~-l~~l~~L~~L 81 (511)
+|++|++++|+|+.+|. .|..+++|++|++++|..+..++. .++++++|++|++++ |. +..++.. ++.+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence 45666666666665543 455666666666666632444443 455666666666665 44 5555532 5556666666
Q ss_pred Cceeeec
Q 010426 82 SNFIVGT 88 (511)
Q Consensus 82 ~~~~~~~ 88 (511)
+++++.+
T Consensus 111 ~l~~n~l 117 (239)
T 2xwt_C 111 GIFNTGL 117 (239)
T ss_dssp EEEEECC
T ss_pred eCCCCCC
Confidence 5555543
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=1.1e-16 Score=152.42 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=54.8
Q ss_pred ceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCc
Q 010426 4 WKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSN 83 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~ 83 (511)
+++|+.|+++++.+..+| ++..+++|++|++++| .+..++. ++.+++|++|++++|. +..++ .++.+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 566777777777777665 4667777777777777 5666665 7777777777777777 65553 5666777777765
Q ss_pred eeeec
Q 010426 84 FIVGT 88 (511)
Q Consensus 84 ~~~~~ 88 (511)
+++.+
T Consensus 115 ~~n~l 119 (308)
T 1h6u_A 115 TSTQI 119 (308)
T ss_dssp TTSCC
T ss_pred CCCCC
Confidence 55443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=2e-15 Score=140.89 Aligned_cols=193 Identities=22% Similarity=0.322 Sum_probs=137.6
Q ss_pred CcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCccccccccc-ccCCCCcCeEEe
Q 010426 275 SLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLPND-MHELNYLQHLCI 351 (511)
Q Consensus 275 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l 351 (511)
..+.+++++ ..++ .+|....++++.|+++++ .++.++...+. ++|++|++++| .++.++.. +..+++|++|++
T Consensus 17 ~~~~l~~~~-~~l~-~ip~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSS-KKLT-AIPSNIPADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTT-SCCS-SCCSCCCTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccC-CCCC-ccCCCCCCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 456677766 4566 566656677888888884 45555543333 58888888888 45555544 477888888888
Q ss_pred cCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEe
Q 010426 352 NRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLN 429 (511)
Q Consensus 352 ~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 429 (511)
++| .++.++.. ..+++|++|++ +.+.++.+.+..+..+++|++|++++ + . +..++...+ ..+++|++|+
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~Ls~-n-~-l~~~~~~~~--~~l~~L~~L~ 163 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRL---DRNQLKSLPPRVFDSLTKLTYLSLGY-N-E-LQSLPKGVF--DKLTSLKELR 163 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECCS-S-C-CCCCCTTTT--TTCTTCCEEE
T ss_pred CCC-cCCcCCHhHcccccCCCEEEC---CCCccCeeCHHHhCcCcCCCEEECCC-C-c-CCccCHhHc--cCCcccceeE
Confidence 888 56665543 45678888888 45666766666678888888888888 3 3 667765223 5678888888
Q ss_pred ecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcccEEEecCCc
Q 010426 430 IIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSILWLNIWSCP 482 (511)
Q Consensus 430 l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 482 (511)
+++|. ++.++...+..+++|++|++++| .++.++...+ .++|++|++.+++
T Consensus 164 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 164 LYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 88887 88887566888888888888885 7777766433 4688888887754
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.1e-15 Score=142.60 Aligned_cols=196 Identities=22% Similarity=0.282 Sum_probs=134.3
Q ss_pred eccEeecCCCccccCCccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCCc-ccCcCCCccCCc
Q 010426 6 HLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALSN 83 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~ 83 (511)
..+.++++++.+..+|..+. ++|++|++++| .+..++ ..++++++|++|++++|. +..+|.. ++.+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence 46889999999999997765 78999999999 666676 468999999999999999 8888876 688999999987
Q ss_pred eeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhh
Q 010426 84 FIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVL 163 (511)
Q Consensus 84 ~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (511)
+.+.+...+. ..+..+++|+.|++++|.... ...
T Consensus 93 ~~n~l~~~~~-------------------------------~~~~~l~~L~~L~l~~n~l~~---------------~~~ 126 (270)
T 2o6q_A 93 TDNKLQALPI-------------------------------GVFDQLVNLAELRLDRNQLKS---------------LPP 126 (270)
T ss_dssp CSSCCCCCCT-------------------------------TTTTTCSSCCEEECCSSCCCC---------------CCT
T ss_pred CCCcCCcCCH-------------------------------hHcccccCCCEEECCCCccCe---------------eCH
Confidence 7665433210 113445577777777662111 111
Q ss_pred cCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCC
Q 010426 164 GKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCS 241 (511)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 241 (511)
..+..+++|++|+++++.+..++..... .+++|+.|++++|.. ..++ .+..+++|++|++++|. +..++ ...+
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~ 201 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFD-KLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQ-LKRVP--EGAF 201 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC-CSCCC--TTTT
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHcc-CCcccceeEecCCcC-cEeChhHhccCCCcCEEECCCCc-CCcCC--HHHh
Confidence 2355667888888888877776654322 577888888888763 4444 46777888888887775 33222 1223
Q ss_pred CCCCCCCeEEcCCCC
Q 010426 242 NPFQSLETLWFEDLP 256 (511)
Q Consensus 242 ~~~~~L~~L~l~~~~ 256 (511)
..+++|+.|++.+++
T Consensus 202 ~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 202 DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEecCCC
Confidence 445666666665543
No 77
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=2.8e-15 Score=145.46 Aligned_cols=235 Identities=16% Similarity=0.115 Sum_probs=136.2
Q ss_pred ceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeE
Q 010426 173 KKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETL 250 (511)
Q Consensus 173 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 250 (511)
+.++.++++.+.+|..+ .+++++|++++|. ++.++ .++++++|++|++++|...+.++.+ .+
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~--~f--------- 75 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD--VF--------- 75 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTT--SB---------
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChh--Hh---------
Confidence 45666667777777544 3578888888876 45555 4678888888888887754444311 11
Q ss_pred EcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCC--CCCCCCCEEEEEccCCcceecccCCC--CCcCeEe
Q 010426 251 WFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPL--CKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLE 326 (511)
Q Consensus 251 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~ 326 (511)
..++++.++...++++++...+. ..+++|+.|++++| .++.++...+. .++..++
T Consensus 76 --------------------~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~ 134 (350)
T 4ay9_X 76 --------------------SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLD 134 (350)
T ss_dssp --------------------CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEE
T ss_pred --------------------hcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhh
Confidence 22333333333333333311111 13445555555553 23333322211 2445555
Q ss_pred eccCcccccccc-cccCC-CCcCeEEecCCCCCcccCCC-CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEec
Q 010426 327 IENCEKLESLPN-DMHEL-NYLQHLCINRCPSIVRFPEE-GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 327 l~~~~~l~~l~~-~~~~~-~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
+.++..+..++. .+..+ ..++.|++++| .++.++.. ....+|+++++. +++.++.++...|.++++|++|++++
T Consensus 135 l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~--~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 135 IQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLS--DNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp EESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECT--TCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhc--cCCcccCCCHHHhccCcccchhhcCC
Confidence 555545555443 23333 34666666666 55555443 223456666665 56666666666677778888888887
Q ss_pred CCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEec
Q 010426 404 CDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDD 457 (511)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 457 (511)
+. ++.+|. ..+.+|+.|.+.++.+++.+| .+..+++|+.+++.+
T Consensus 212 --N~-l~~lp~-----~~~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 212 --TR-IHSLPS-----YGLENLKKLRARSTYNLKKLP--TLEKLVALMEASLTY 255 (350)
T ss_dssp --SC-CCCCCS-----SSCTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSC
T ss_pred --CC-cCccCh-----hhhccchHhhhccCCCcCcCC--CchhCcChhhCcCCC
Confidence 34 777776 456777777777777788877 467788888887754
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=4.8e-16 Score=146.43 Aligned_cols=197 Identities=20% Similarity=0.182 Sum_probs=143.2
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccc-cccccCcCccceEEecCcccccccCCcccCcCCCcc
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQA 80 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 80 (511)
+++++++.++++++.++.+|..+. +++++|++++| .+..+ +..+..+++|++|++++|. +..++.. +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 568889999999999999997775 79999999999 55555 4679999999999999999 8887654 78999999
Q ss_pred CCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhh
Q 010426 81 LSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREE 160 (511)
Q Consensus 81 L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (511)
|+++++.+...+.. +..+++|+.|++++|... .
T Consensus 82 L~Ls~N~l~~l~~~--------------------------------~~~l~~L~~L~l~~N~l~---------------~ 114 (290)
T 1p9a_G 82 LDLSHNQLQSLPLL--------------------------------GQTLPALTVLDVSFNRLT---------------S 114 (290)
T ss_dssp EECCSSCCSSCCCC--------------------------------TTTCTTCCEEECCSSCCC---------------C
T ss_pred EECCCCcCCcCchh--------------------------------hccCCCCCEEECCCCcCc---------------c
Confidence 99877765433211 334457777777776211 1
Q ss_pred hhhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCC
Q 010426 161 LVLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGE 238 (511)
Q Consensus 161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~ 238 (511)
.....+..+++|++|++++|.+..++..... .+++|+.|++++|. +..++ .+..+++|+.|++++|. +..++
T Consensus 115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip--- 188 (290)
T 1p9a_G 115 LPLGALRGLGELQELYLKGNELKTLPPGLLT-PTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIP--- 188 (290)
T ss_dssp CCSSTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCC---
T ss_pred cCHHHHcCCCCCCEEECCCCCCCccChhhcc-cccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-CCccC---
Confidence 1113456677888888888888777655432 57888888888886 45555 45678888888888876 44444
Q ss_pred CCCCCCCCCCeEEcCCCC
Q 010426 239 HCSNPFQSLETLWFEDLP 256 (511)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~ 256 (511)
..+...++|+.+++.+.+
T Consensus 189 ~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCCCSEEECCSCC
T ss_pred hhhcccccCCeEEeCCCC
Confidence 233345678888888754
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.3e-16 Score=152.33 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=63.4
Q ss_pred ccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCC
Q 010426 128 CEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCEN 207 (511)
Q Consensus 128 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 207 (511)
..+++|+.|++++|... .........+..+++|++|++++|.+...+.......+++|++|++++|..
T Consensus 198 ~~l~~L~~L~L~~N~l~------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGME------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp TSCTTCCEEECTTSCCC------------CHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred ccCCCCCEEECCCCcCc------------chHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 56677788888776100 000111112234567888888877766543211112467788888888763
Q ss_pred CCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCC
Q 010426 208 CTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLP 256 (511)
Q Consensus 208 ~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 256 (511)
..+| .+. ++|++|++++|. ++.++ .+..+++|+.|++.+.+
T Consensus 266 -~~ip~~~~--~~L~~L~Ls~N~-l~~~p----~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 -KQVPKGLP--AKLSVLDLSYNR-LDRNP----SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -SSCCSSCC--SEEEEEECCSSC-CCSCC----CTTTSCEEEEEECTTCT
T ss_pred -Chhhhhcc--CCceEEECCCCC-CCCCh----hHhhCCCCCEEeccCCC
Confidence 4555 333 778888888775 33332 24557778888877764
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=8.9e-16 Score=155.47 Aligned_cols=215 Identities=13% Similarity=0.115 Sum_probs=153.5
Q ss_pred CCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccc
Q 010426 193 SFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVA 271 (511)
Q Consensus 193 ~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 271 (511)
.+++|+.|++++|......+ .++.+++|+.|++++|......+ +.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------------------l~ 77 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----------------------------------LE 77 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----------------------------------CT
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----------------------------------cc
Confidence 45689999999987544433 68888999999998877322221 23
Q ss_pred cCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEe
Q 010426 272 GFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCI 351 (511)
Q Consensus 272 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 351 (511)
.+++|++|++++| .++ .++. .++|+.|++++| .++.++...++ +|+.|++++|..-...|..+..+++|++|++
T Consensus 78 ~l~~L~~L~Ls~N-~l~-~l~~--~~~L~~L~L~~N-~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 78 SLSTLRTLDLNNN-YVQ-ELLV--GPSIETLHAANN-NISRVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp TCTTCCEEECCSS-EEE-EEEE--CTTCCEEECCSS-CCCCEEECCCS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred cCCCCCEEEecCC-cCC-CCCC--CCCcCEEECcCC-cCCCCCccccC-CCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 4566777777764 444 2221 378999999995 45556555554 8999999999544444667788999999999
Q ss_pred cCCCCCcccCCC---CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceE
Q 010426 352 NRCPSIVRFPEE---GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYL 428 (511)
Q Consensus 352 ~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 428 (511)
++| .++..+.. ..+++|+.|++ +.+.++.++ ....+++|+.|++++ +. +..++. .+ ..+++|+.|
T Consensus 152 s~N-~l~~~~~~~l~~~l~~L~~L~L---s~N~l~~~~--~~~~l~~L~~L~Ls~--N~-l~~~~~-~~--~~l~~L~~L 219 (487)
T 3oja_A 152 KLN-EIDTVNFAELAASSDTLEHLNL---QYNFIYDVK--GQVVFAKLKTLDLSS--NK-LAFMGP-EF--QSAAGVTWI 219 (487)
T ss_dssp TTS-CCCEEEGGGGGGGTTTCCEEEC---TTSCCCEEE--CCCCCTTCCEEECCS--SC-CCEECG-GG--GGGTTCSEE
T ss_pred CCC-CCCCcChHHHhhhCCcccEEec---CCCcccccc--ccccCCCCCEEECCC--CC-CCCCCH-hH--cCCCCccEE
Confidence 999 55543322 24689999999 455565553 344688999999998 34 777776 44 677899999
Q ss_pred eecCCcCCcccCccccCCCCCcCEEeEecCCCC
Q 010426 429 NIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNL 461 (511)
Q Consensus 429 ~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l 461 (511)
++++|. ++.+| ..+..+++|+.|++++|+..
T Consensus 220 ~Ls~N~-l~~lp-~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 220 SLRNNK-LVLIE-KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTSC-CCEEC-TTCCCCTTCCEEECTTCCBC
T ss_pred EecCCc-Ccccc-hhhccCCCCCEEEcCCCCCc
Confidence 999988 88888 66888899999999886543
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=2e-15 Score=141.34 Aligned_cols=84 Identities=25% Similarity=0.295 Sum_probs=66.5
Q ss_pred eccEeecCCCccccCCc-cccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccC-CcccCcCCCccCC
Q 010426 6 HLRYLNLSDTRIRNLPK-PTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIP-FGMKELKNLQALS 82 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~ 82 (511)
+|++|++++|.|..++. .|..+++|++|++++| .+..++ ..++.+++|++|++++|. +..++ ..++.+++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEE
Confidence 58899999999987764 6888999999999998 555555 468889999999999998 66666 4488889999988
Q ss_pred ceeeecCCC
Q 010426 83 NFIVGTDTK 91 (511)
Q Consensus 83 ~~~~~~~~~ 91 (511)
+..+.+...
T Consensus 107 l~~n~l~~~ 115 (276)
T 2z62_A 107 AVETNLASL 115 (276)
T ss_dssp CTTSCCCCS
T ss_pred CCCCCcccc
Confidence 776665443
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=1.7e-14 Score=139.94 Aligned_cols=236 Identities=16% Similarity=0.129 Sum_probs=141.2
Q ss_pred ccEeecCCCccccCCccccccccccEEeccCccccccccc-cccCcCccceEEecCcccccccCCc-ccCcCCCccCCce
Q 010426 7 LRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPS-KLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALSNF 84 (511)
Q Consensus 7 Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~~ 84 (511)
-++++.++++++++|..+. +++++|+|++| .+..+|. +|+++++|++|++++|...+.+|.+ |..+++++++...
T Consensus 11 ~~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTEEEEESTTCCSCCTTCC--TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CCEEEecCCCCCccCcCcC--CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3677888899999997763 68999999999 7888885 5899999999999999844566654 6777776654321
Q ss_pred e-eecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhh
Q 010426 85 I-VGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVL 163 (511)
Q Consensus 85 ~-~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (511)
. +.+. .+ ..
T Consensus 88 ~~N~l~----------~l------------------------------------------------------------~~ 97 (350)
T 4ay9_X 88 KANNLL----------YI------------------------------------------------------------NP 97 (350)
T ss_dssp EETTCC----------EE------------------------------------------------------------CT
T ss_pred cCCccc----------cc------------------------------------------------------------Cc
Confidence 1 1110 00 00
Q ss_pred cCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCC-CCccEEEecCCccceEeccCCCC
Q 010426 164 GKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLL-SSLKHLTVKGLRKLKSMGYGEHC 240 (511)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l-~~L~~L~l~~~~~~~~~~~~~~~ 240 (511)
..+..+++|++|+++++.+..++..... ...++..+++.++..+..++ .+..+ ..++.|++++|. ++.++.+
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~--- 172 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS--- 172 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT---
T ss_pred hhhhhccccccccccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh---
Confidence 1233445666666666666555543321 34566677777665555554 34444 356777777665 3333210
Q ss_pred CCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCC---CCCCCCCEEEEEccCCcceecccC
Q 010426 241 SNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPL---CKNSQLESLCIRYCDSLTFIARRK 317 (511)
Q Consensus 241 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~ 317 (511)
.....+++++.+.+++.++ .++. ..+++|+.|++++| .++.++...
T Consensus 173 -----------------------------~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~ 221 (350)
T 4ay9_X 173 -----------------------------AFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRT-RIHSLPSYG 221 (350)
T ss_dssp -----------------------------SSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTS-CCCCCCSSS
T ss_pred -----------------------------hccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCC-CcCccChhh
Confidence 0122345555555544444 3432 24556666666663 455555544
Q ss_pred CCCCcCeEeeccCcccccccccccCCCCcCeEEecC
Q 010426 318 LPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINR 353 (511)
Q Consensus 318 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 353 (511)
+. +|+.|.+.++..++.+| .+..+++|+.+++.+
T Consensus 222 ~~-~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 222 LE-NLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CT-TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hc-cchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 44 66666666666666666 356677777777654
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.9e-14 Score=134.66 Aligned_cols=109 Identities=24% Similarity=0.288 Sum_probs=65.1
Q ss_pred ccCCCCcCeEEecCCCCCccc--CC-CCCCCCCceEEEEecccccccchhhhhhccCCccc----EEEEecCCCCCcccc
Q 010426 340 MHELNYLQHLCINRCPSIVRF--PE-EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLR----RLWIEGCDDDEAECF 412 (511)
Q Consensus 340 ~~~~~~L~~L~l~~~~~l~~~--~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~ 412 (511)
+..+++|++|++++| .++.+ +. ...+++|++|++ +.+.++.+.+..+..+++|+ .|++++ +. +..+
T Consensus 120 ~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~--n~-l~~~ 192 (276)
T 2z62_A 120 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDL---SSNKIQSIYCTDLRVLHQMPLLNLSLDLSL--NP-MNFI 192 (276)
T ss_dssp CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEEC---CSSCCCEECGGGGHHHHTCTTCCEEEECCS--SC-CCEE
T ss_pred cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEEC---CCCCCCcCCHHHhhhhhhccccceeeecCC--Cc-cccc
Confidence 444555555555555 33321 11 133455555555 23333333333444444444 788888 33 6666
Q ss_pred CcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 413 PDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 413 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
+. .. ....+|++|++++|. ++.++...+..+++|++|++++++
T Consensus 193 ~~-~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 193 QP-GA--FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CT-TS--SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred Cc-cc--cCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 65 33 234589999999988 888886677889999999999853
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=1.3e-14 Score=137.92 Aligned_cols=195 Identities=16% Similarity=0.166 Sum_probs=144.5
Q ss_pred CCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcC
Q 010426 244 FQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLK 323 (511)
Q Consensus 244 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 323 (511)
+++|+.|++.++.. ..+. ....+++|++|++++| .+.+..+...+++|+.|++++|. ++.++...-.++|+
T Consensus 40 l~~L~~L~l~~~~i-~~l~------~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~ 110 (308)
T 1h6u_A 40 LDGITTLSAFGTGV-TTIE------GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIK 110 (308)
T ss_dssp HHTCCEEECTTSCC-CCCT------TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCGGGTTCTTCC
T ss_pred cCCcCEEEeeCCCc-cCch------hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCCchhhcCCCCCC
Confidence 78899999988642 2221 1456889999999986 55533345678899999999864 55554322235899
Q ss_pred eEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEec
Q 010426 324 WLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 324 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
+|++++| .++.++. +..+++|++|++++| .++.++....+++|+.|+++ .+.++++.+ +..+++|+.|++++
T Consensus 111 ~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~---~n~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 111 TLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIG---NAQVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp EEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECC---SSCCCCCGG--GTTCTTCCEEECCS
T ss_pred EEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEcc---CCcCCCChh--hcCCCCCCEEECCC
Confidence 9999999 5666654 888999999999999 67776666677899999995 446666553 78899999999998
Q ss_pred CCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCC
Q 010426 404 CDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPE 466 (511)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~ 466 (511)
+ . +..++. + ..+++|++|++++|. ++.++ .+..+++|+.|++++| .++..|.
T Consensus 183 -n-~-l~~~~~--l--~~l~~L~~L~L~~N~-l~~~~--~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 183 -N-K-ISDISP--L--ASLPNLIEVHLKNNQ-ISDVS--PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp -S-C-CCCCGG--G--GGCTTCCEEECTTSC-CCBCG--GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred -C-c-cCcChh--h--cCCCCCCEEEccCCc-cCccc--cccCCCCCCEEEccCC-eeecCCe
Confidence 3 3 666653 2 568899999999988 88876 4788999999999985 4555433
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=2.7e-15 Score=141.40 Aligned_cols=168 Identities=22% Similarity=0.230 Sum_probs=108.1
Q ss_pred CceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
.+++|+.|++++|.|..++ .+..+++|++|++++| .+..++. ++.+++|++|++++|. +..++ .++.+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 3566777777777777764 3677777777777777 5666665 7777777777777777 66654 377777777777
Q ss_pred ceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhh
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELV 162 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (511)
++++.+... ..+..+++|+.|++++|... .
T Consensus 119 L~~n~i~~~---------------------------------~~l~~l~~L~~L~l~~n~l~-----------------~ 148 (291)
T 1h6t_A 119 LEHNGISDI---------------------------------NGLVHLPQLESLYLGNNKIT-----------------D 148 (291)
T ss_dssp CTTSCCCCC---------------------------------GGGGGCTTCCEEECCSSCCC-----------------C
T ss_pred CCCCcCCCC---------------------------------hhhcCCCCCCEEEccCCcCC-----------------c
Confidence 655543221 11334456777777666110 0
Q ss_pred hcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCc
Q 010426 163 LGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 229 (511)
+..+..+++|+.|++++|.+..++. +. .+++|+.|++++|. +..++.+..+++|+.|++++|.
T Consensus 149 ~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 149 ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 1234556677777777777666654 32 56777777777775 4555666777777777777664
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=4.8e-15 Score=138.38 Aligned_cols=176 Identities=22% Similarity=0.311 Sum_probs=109.9
Q ss_pred ccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCccccccc-ccccCCCCcCeE
Q 010426 271 AGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLP-NDMHELNYLQHL 349 (511)
Q Consensus 271 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L 349 (511)
..+++|+.|++.++ .++..-....+++|+.|++++|. ++.++...-.++|++|++++| .++.++ ..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCC-CcccccccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 35677788887775 34422223457777777777753 444432222247777777777 444443 345677777777
Q ss_pred EecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccce
Q 010426 350 CINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSY 427 (511)
Q Consensus 350 ~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 427 (511)
++++| .++.++.. ..+++|++|++ +.+.++.+++..+..+++|+.|++++ | . ++.++...+ ..+++|++
T Consensus 115 ~L~~n-~l~~~~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~l~~-n-~-l~~~~~~~~--~~l~~L~~ 185 (272)
T 3rfs_A 115 VLVEN-QLQSLPDGVFDKLTNLTYLNL---AHNQLQSLPKGVFDKLTNLTELDLSY-N-Q-LQSLPEGVF--DKLTQLKD 185 (272)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECCS-S-C-CCCCCTTTT--TTCTTCCE
T ss_pred ECCCC-cCCccCHHHhccCCCCCEEEC---CCCccCccCHHHhccCccCCEEECCC-C-C-cCccCHHHh--cCCccCCE
Confidence 77777 45555442 45677777777 34456666555567777777777777 3 3 555554122 45677777
Q ss_pred EeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 428 LNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 428 L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
|++++|. ++.++...+..+++|+.|++++|+
T Consensus 186 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 186 LRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 7777776 666665556777777777777754
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=137.37 Aligned_cols=197 Identities=18% Similarity=0.144 Sum_probs=136.1
Q ss_pred cCCCcCeeeeccCCCcCcCCCC----CCCCCCCEEEEEccCCcceec------ccCCCCCcCeEeeccCccccccccccc
Q 010426 272 GFSSLRELSILNCSKFSGILPL----CKNSQLESLCIRYCDSLTFIA------RRKLPSSLKWLEIENCEKLESLPNDMH 341 (511)
Q Consensus 272 ~~~~L~~L~l~~c~~l~~~~~~----~~~~~L~~L~l~~~~~l~~~~------~~~~~~~L~~L~l~~~~~l~~l~~~~~ 341 (511)
.+++|++|++++| .+.+..+. ..+++|++|++++|......+ ... .++|++|++++|......+..+.
T Consensus 89 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 89 AYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL-KPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp HHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB-CSCCCEEEEECCSSCCCCTTSCC
T ss_pred ccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh-ccCCCEEEeeCCCcchhhHHHhc
Confidence 3466888999886 44434443 558889999999865332111 111 25999999999965444556788
Q ss_pred CCCCcCeEEecCCCCCcc--cC---CCCCCCCCceEEEEecccccccch---hhhhhccCCcccEEEEecCCCCCcccc-
Q 010426 342 ELNYLQHLCINRCPSIVR--FP---EEGFPTNLVELEIRRVDVKMYKAI---IHWGLHRLTSLRRLWIEGCDDDEAECF- 412 (511)
Q Consensus 342 ~~~~L~~L~l~~~~~l~~--~~---~~~~~~~L~~L~l~~~~~~~l~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~- 412 (511)
.+++|++|++++|..... ++ ....+++|++|+++ .+.++.+ ....+..+++|++|++++ + . +...
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls---~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N-~-l~~~~ 240 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR---NTGMETPTGVCAALAAAGVQPHSLDLSH-N-S-LRATV 240 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC---SSCCCCHHHHHHHHHHHTCCCSSEECTT-S-C-CCCCC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC---CCCCCchHHHHHHHHhcCCCCCEEECCC-C-C-CCccc
Confidence 999999999999953331 21 11467899999995 4445433 222357889999999999 3 3 5555
Q ss_pred Cccccc-ccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCCCCcccEEEecCCc
Q 010426 413 PDEEMG-MMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGLPSSILWLNIWSCP 482 (511)
Q Consensus 413 ~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 482 (511)
|. ... ...+++|++|++++|. ++.+| ..+ +++|++|++++ ++++.+|.-...++|++|++++++
T Consensus 241 p~-~~~~~~~~~~L~~L~Ls~N~-l~~lp-~~~--~~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 241 NP-SAPRCMWSSALNSLNLSFAG-LEQVP-KGL--PAKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CS-CCSSCCCCTTCCCEECCSSC-CCSCC-SCC--CSCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTT
T ss_pred hh-hHHhccCcCcCCEEECCCCC-CCchh-hhh--cCCCCEEECCC-CcCCCCchhhhCCCccEEECcCCC
Confidence 43 221 1224799999999998 88888 444 38999999999 577777664455899999998864
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=5.5e-14 Score=129.55 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=104.8
Q ss_pred CCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCcccccccccccCCCCcCeEEe
Q 010426 274 SSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLPNDMHELNYLQHLCI 351 (511)
Q Consensus 274 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 351 (511)
+..+.+++++ ..++ .+|....++++.|+++++ .++.+....+. ++|++|++++|..-...+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~-~~l~-~~p~~~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQG-KSLD-SVPSGIPADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTT-CCCS-SCCSCCCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCC-CCcc-ccCCCCCCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 3456677766 4555 566555567777777774 34444433222 47777777777333333344667777777777
Q ss_pred cCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEe
Q 010426 352 NRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLN 429 (511)
Q Consensus 352 ~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 429 (511)
++| .++.++.. ..+++|++|++ +.+.++.+++..+..+++|+.|++++ +. +..++...+ ..+++|++|+
T Consensus 91 ~~n-~l~~~~~~~~~~l~~L~~L~L---~~N~l~~~~~~~~~~l~~L~~L~Ls~--N~-l~~~~~~~~--~~l~~L~~L~ 161 (251)
T 3m19_A 91 ANN-QLASLPLGVFDHLTQLDKLYL---GGNQLKSLPSGVFDRLTKLKELRLNT--NQ-LQSIPAGAF--DKLTNLQTLS 161 (251)
T ss_dssp TTS-CCCCCCTTTTTTCTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECCS--SC-CCCCCTTTT--TTCTTCCEEE
T ss_pred CCC-cccccChhHhcccCCCCEEEc---CCCcCCCcChhHhccCCcccEEECcC--Cc-CCccCHHHc--CcCcCCCEEE
Confidence 777 45555432 45567777777 44455555555566677777777777 23 556554122 4566777777
Q ss_pred ecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 430 IIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 430 l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
+++|. ++.++...+..+++|+.|++++|+
T Consensus 162 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 162 LSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 77766 666665566677777777777643
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=4.7e-14 Score=129.98 Aligned_cols=172 Identities=16% Similarity=0.216 Sum_probs=138.1
Q ss_pred CCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEE
Q 010426 298 QLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIR 375 (511)
Q Consensus 298 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~ 375 (511)
+.+.+++++ ..++.++. .++++++.|++++|..-...+..+..+++|++|++++| .++.++.. ..+++|++|++
T Consensus 15 ~~~~l~~~~-~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L- 90 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL- 90 (251)
T ss_dssp GGTEEECTT-CCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC-
T ss_pred CCeEEecCC-CCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC-
Confidence 456777777 46777765 35569999999999554444557899999999999999 66766553 56799999999
Q ss_pred ecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeE
Q 010426 376 RVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWI 455 (511)
Q Consensus 376 ~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l 455 (511)
+.+.++.+++..+..+++|++|++++ +. ++.++...+ ..+++|++|++++|. ++.++...+..+++|++|++
T Consensus 91 --~~n~l~~~~~~~~~~l~~L~~L~L~~--N~-l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 91 --ANNQLASLPLGVFDHLTQLDKLYLGG--NQ-LKSLPSGVF--DRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp --TTSCCCCCCTTTTTTCTTCCEEECCS--SC-CCCCCTTTT--TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred --CCCcccccChhHhcccCCCCEEEcCC--Cc-CCCcChhHh--ccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEEC
Confidence 67778887777889999999999999 34 788876223 568999999999998 99998667999999999999
Q ss_pred ecCCCCcccCCCCC--CCcccEEEecCCc
Q 010426 456 DDCPNLTSFPEAGL--PSSILWLNIWSCP 482 (511)
Q Consensus 456 ~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 482 (511)
++ ++++.++...+ .++|++|++.+++
T Consensus 163 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 163 ST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 99 57777765333 4799999999865
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=5e-15 Score=141.16 Aligned_cols=204 Identities=16% Similarity=0.135 Sum_probs=106.0
Q ss_pred eeccEeecCCCccc-cCCccc--cccccccEEeccCcccccccc----ccccCcCccceEEecCcccccccC-CcccCcC
Q 010426 5 KHLRYLNLSDTRIR-NLPKPT--CSLINLQVLLLRDCYYLLKLP----SKLRNLINLRHLDIMGAYLIKEIP-FGMKELK 76 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~-~l~~~~--~~l~~L~~L~L~~n~~~~~l~----~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~ 76 (511)
++|++|++++|.+. ..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|. +..++ ..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence 45777777777776 345555 777778888887773333322 224567777888887777 55555 3477777
Q ss_pred CCccCCceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcch
Q 010426 77 NLQALSNFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNE 156 (511)
Q Consensus 77 ~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 156 (511)
+|++|+++++.+... ..+. ....+..+++|+.|++++|.. .
T Consensus 170 ~L~~L~Ls~N~l~~~-~~~~--------------------------~~~~~~~l~~L~~L~Ls~N~l------------~ 210 (310)
T 4glp_A 170 ALTSLDLSDNPGLGE-RGLM--------------------------AALCPHKFPAIQNLALRNTGM------------E 210 (310)
T ss_dssp TCCEEECCSCTTCHH-HHHH--------------------------TTSCTTSSCCCCSCBCCSSCC------------C
T ss_pred CCCEEECCCCCCccc-hhhh--------------------------HHHhhhcCCCCCEEECCCCCC------------C
Confidence 777777766653221 0000 000112344556666655510 0
Q ss_pred hhhhhhhcCCCCCCCCceEEEecCCCccC-CcccCC-CCCCCccEEEEecCCCCCCCC-CCCCCCCccEEEecCCccceE
Q 010426 157 SREELVLGKLKPCTSIKKLTIKGYGGKKI-PSWIAD-PSFSKMEVLGLENCENCTSLP-SFGLLSSLKHLTVKGLRKLKS 233 (511)
Q Consensus 157 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~ 233 (511)
.........+..+++|++|++++|.+... |..+.. ..+++|++|++++|.. ..+| .+. ++|++|++++|. +..
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~--~~L~~L~Ls~N~-l~~ 286 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL-EQVPKGLP--AKLRVLDLSSNR-LNR 286 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC-CSCCSCCC--SCCSCEECCSCC-CCS
T ss_pred chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC-Cchhhhhc--CCCCEEECCCCc-CCC
Confidence 00000000122345666666666665544 333321 1125666666666653 3444 222 566666666655 222
Q ss_pred eccCCCCCCCCCCCCeEEcCCCC
Q 010426 234 MGYGEHCSNPFQSLETLWFEDLP 256 (511)
Q Consensus 234 ~~~~~~~~~~~~~L~~L~l~~~~ 256 (511)
++ ....+++|+.|++++.+
T Consensus 287 ~~----~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 AP----QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CC----CTTSCCCCSCEECSSTT
T ss_pred Cc----hhhhCCCccEEECcCCC
Confidence 21 13345666666666553
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=7.5e-14 Score=130.28 Aligned_cols=172 Identities=19% Similarity=0.253 Sum_probs=77.3
Q ss_pred CCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceE
Q 010426 295 KNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVEL 372 (511)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L 372 (511)
.+++|+.|+++++ .++.++.....++|++|++++| .++.++ .+..+++|++|++++| .++.++.. ..+++|++|
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCC-CcccccccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 3445555555543 2333322111135555555555 233332 4445555555555555 34433331 334555555
Q ss_pred EEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCE
Q 010426 373 EIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEF 452 (511)
Q Consensus 373 ~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~ 452 (511)
++ +.+.++.+.+..+..+++|++|++++ + . ++.++...+ ..+++|++|++++|. ++.++...+..+++|++
T Consensus 115 ~L---~~n~l~~~~~~~~~~l~~L~~L~L~~-n-~-l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 115 VL---VENQLQSLPDGVFDKLTNLTYLNLAH-N-Q-LQSLPKGVF--DKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp EC---TTSCCCCCCTTTTTTCTTCCEEECCS-S-C-CCCCCTTTT--TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred EC---CCCcCCccCHHHhccCCCCCEEECCC-C-c-cCccCHHHh--ccCccCCEEECCCCC-cCccCHHHhcCCccCCE
Confidence 55 33344444443445555555555555 2 2 444443111 344555555555554 55444334455555555
Q ss_pred EeEecCCCCcccCCCC--CCCcccEEEecC
Q 010426 453 LWIDDCPNLTSFPEAG--LPSSILWLNIWS 480 (511)
Q Consensus 453 L~l~~c~~l~~~~~~~--~~~~L~~L~l~~ 480 (511)
|++++| .++.++... ..++|++|++++
T Consensus 186 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 186 LRLYQN-QLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCC-cCCccCHHHHhCCcCCCEEEccC
Confidence 555553 344433321 124555555544
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=5.9e-16 Score=149.47 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=42.0
Q ss_pred ccEeecCCCccccCCcccccc--ccccEEeccCccccccccccccCcCccceEEecCcccccc--cCCcccCcCCCccCC
Q 010426 7 LRYLNLSDTRIRNLPKPTCSL--INLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKE--IPFGMKELKNLQALS 82 (511)
Q Consensus 7 Lr~L~L~~n~i~~l~~~~~~l--~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~--l~~~l~~l~~L~~L~ 82 (511)
++.++++++.+. +..+..+ +++++|++++| .+...+..+..+++|++|++++|. +.. ++..++.+++|++|+
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEe
Confidence 455666665554 3334444 56666666666 444333335556666666666665 332 444455666666666
Q ss_pred ceeee
Q 010426 83 NFIVG 87 (511)
Q Consensus 83 ~~~~~ 87 (511)
++++.
T Consensus 125 L~~~~ 129 (336)
T 2ast_B 125 LEGLR 129 (336)
T ss_dssp CTTCB
T ss_pred CcCcc
Confidence 54443
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=1.3e-14 Score=149.83 Aligned_cols=168 Identities=23% Similarity=0.232 Sum_probs=119.9
Q ss_pred CceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
.+++|+.|++++|.|..+| .+..+++|+.|+|++| .+..++. +..+++|+.|++++|. +..+| .++.+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 4667888888888888775 4778888888888888 6666666 7888888888888887 66654 677888888887
Q ss_pred ceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhh
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELV 162 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (511)
++.+.+... ..+..+++|+.|+++.|... .
T Consensus 116 Ls~N~l~~l---------------------------------~~l~~l~~L~~L~Ls~N~l~-----------------~ 145 (605)
T 1m9s_A 116 LEHNGISDI---------------------------------NGLVHLPQLESLYLGNNKIT-----------------D 145 (605)
T ss_dssp CTTSCCCCC---------------------------------GGGGGCTTCSEEECCSSCCC-----------------C
T ss_pred ecCCCCCCC---------------------------------ccccCCCccCEEECCCCccC-----------------C
Confidence 665544221 11344567788888776111 1
Q ss_pred hcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCc
Q 010426 163 LGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 229 (511)
+..+..+++|+.|++++|.+..++. +. .+++|+.|+|++|. +..++.+..+++|+.|++++|.
T Consensus 146 l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 146 ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CGGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred chhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 1345567788888888887776655 33 57888888888886 4556777788888888888775
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1.8e-16 Score=153.08 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=90.6
Q ss_pred cccEEeccCccccccccccccCc--CccceEEecCcccccccCCcccCcCCCccCCceeeecCCCccCccccccccccCc
Q 010426 29 NLQVLLLRDCYYLLKLPSKLRNL--INLRHLDIMGAYLIKEIPFGMKELKNLQALSNFIVGTDTKSSGLKDLKSLAFVGG 106 (511)
Q Consensus 29 ~L~~L~L~~n~~~~~l~~~~~~l--~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~~ 106 (511)
.++.++++++ .+. +..+..+ ++++.|++++|. +...+..+..+++|++|+++++.+..
T Consensus 48 ~~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~---------------- 107 (336)
T 2ast_B 48 LWQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEV---------------- 107 (336)
T ss_dssp TSSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECH----------------
T ss_pred hheeeccccc-cCC--HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCH----------------
Confidence 3778888877 333 3445666 778888888887 66666666677888888765543211
Q ss_pred eEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecC-CCc--
Q 010426 107 ELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGY-GGK-- 183 (511)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~-- 183 (511)
......+..+++|+.|++++|. ........+..+++|++|+++++ ...
T Consensus 108 --------------~~~~~~~~~~~~L~~L~L~~~~---------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 108 --------------STLHGILSQCSKLQNLSLEGLR---------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158 (336)
T ss_dssp --------------HHHHHHHTTBCCCSEEECTTCB---------------CCHHHHHHHTTCTTCSEEECTTCBSCCHH
T ss_pred --------------HHHHHHHhhCCCCCEEeCcCcc---------------cCHHHHHHHhcCCCCCEEECCCCCCCCHH
Confidence 1122234455677777776661 11122233444677888888776 343
Q ss_pred cCCcccCCCCCCCccEEEEecCCCCCC--CC-CCCCCC-CccEEEecCCc
Q 010426 184 KIPSWIADPSFSKMEVLGLENCENCTS--LP-SFGLLS-SLKHLTVKGLR 229 (511)
Q Consensus 184 ~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~-~l~~l~-~L~~L~l~~~~ 229 (511)
.++..+. .+++|++|++++|..++. ++ .+..++ +|++|++++|.
T Consensus 159 ~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 159 ALQTLLS--SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHHHHH--HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred HHHHHHh--cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 2333333 467888888888733443 23 455677 88888888775
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=2.8e-14 Score=126.28 Aligned_cols=148 Identities=16% Similarity=0.220 Sum_probs=80.8
Q ss_pred ceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccc-cCCcccCcCCCccCC
Q 010426 4 WKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKE-IPFGMKELKNLQALS 82 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~-l~~~l~~l~~L~~L~ 82 (511)
+++|+.|++++|.|..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|. +.. .+..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEE
Confidence 445666666666666555 4555666666666666 444443 35556666666666665 332 344455555555555
Q ss_pred ceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhh
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELV 162 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (511)
++.+.+... .
T Consensus 119 Ls~n~i~~~----------------------------------------------------------------------~ 128 (197)
T 4ezg_A 119 ISHSAHDDS----------------------------------------------------------------------I 128 (197)
T ss_dssp CCSSBCBGG----------------------------------------------------------------------G
T ss_pred ecCCccCcH----------------------------------------------------------------------h
Confidence 443332110 1
Q ss_pred hcCCCCCCCCceEEEecCC-CccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCc
Q 010426 163 LGKLKPCTSIKKLTIKGYG-GKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 229 (511)
...+..+++|++|++++|. ...++. +. .+++|+.|++++|. +..++.+..+++|++|++++|.
T Consensus 129 ~~~l~~l~~L~~L~L~~n~~i~~~~~-l~--~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNGAITDIMP-LK--TLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp HHHHTTCSSCCEEECCSCTBCCCCGG-GG--GCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred HHHHhhCCCCCEEEccCCCCccccHh-hc--CCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 1122334555666665554 444442 22 46677777777775 4455566677777777777665
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=1.2e-15 Score=150.14 Aligned_cols=75 Identities=9% Similarity=0.038 Sum_probs=36.5
Q ss_pred CCCccccCCccccccccccEEeccCcccccc----ccccccCcCccceEEecCccccc----ccCCcc-------cCcCC
Q 010426 13 SDTRIRNLPKPTCSLINLQVLLLRDCYYLLK----LPSKLRNLINLRHLDIMGAYLIK----EIPFGM-------KELKN 77 (511)
Q Consensus 13 ~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~----l~~~~~~l~~L~~L~l~~~~~l~----~l~~~l-------~~l~~ 77 (511)
+...+..++..+..+++|++|+|++|..... ++..+..+++|++|++++|. +. .+|.++ ..+++
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCc
Confidence 3333444555555566666666666622222 22234456666666666553 22 222222 45566
Q ss_pred CccCCceeeec
Q 010426 78 LQALSNFIVGT 88 (511)
Q Consensus 78 L~~L~~~~~~~ 88 (511)
|++|+++++.+
T Consensus 96 L~~L~Ls~n~l 106 (386)
T 2ca6_A 96 LHTVRLSDNAF 106 (386)
T ss_dssp CCEEECCSCCC
T ss_pred ccEEECCCCcC
Confidence 66665555443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=2.1e-13 Score=128.49 Aligned_cols=174 Identities=19% Similarity=0.189 Sum_probs=131.9
Q ss_pred ccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEE
Q 010426 271 AGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLC 350 (511)
Q Consensus 271 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 350 (511)
..+++|+.|++++| .+...-....+++|+.|++++| .++.++...-.++|++|++++| .++.++ .+..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred hhcCcccEEEccCC-CcccChhHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEE
Confidence 35788999999986 4542323446889999999996 4555543222259999999999 566665 488999999999
Q ss_pred ecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEee
Q 010426 351 INRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNI 430 (511)
Q Consensus 351 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 430 (511)
+++| .++.++....+++|+.|+++ .+.++.+ ..+..+++|+.|++++ | . +..++. . ..+++|++|++
T Consensus 119 L~~n-~i~~~~~l~~l~~L~~L~l~---~n~l~~~--~~l~~l~~L~~L~L~~-N-~-l~~~~~--l--~~l~~L~~L~L 185 (291)
T 1h6t_A 119 LEHN-GISDINGLVHLPQLESLYLG---NNKITDI--TVLSRLTKLDTLSLED-N-Q-ISDIVP--L--AGLTKLQNLYL 185 (291)
T ss_dssp CTTS-CCCCCGGGGGCTTCCEEECC---SSCCCCC--GGGGGCTTCSEEECCS-S-C-CCCCGG--G--TTCTTCCEEEC
T ss_pred CCCC-cCCCChhhcCCCCCCEEEcc---CCcCCcc--hhhccCCCCCEEEccC-C-c-cccchh--h--cCCCccCEEEC
Confidence 9999 67777666778899999994 5556655 3688899999999999 3 3 666653 2 57899999999
Q ss_pred cCCcCCcccCccccCCCCCcCEEeEecCCCCcccC
Q 010426 431 IGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFP 465 (511)
Q Consensus 431 ~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~ 465 (511)
++|. ++.++ .+..+++|+.|++++| .++..|
T Consensus 186 ~~N~-i~~l~--~l~~l~~L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 186 SKNH-ISDLR--ALAGLKNLDVLELFSQ-ECLNKP 216 (291)
T ss_dssp CSSC-CCBCG--GGTTCTTCSEEEEEEE-EEECCC
T ss_pred CCCc-CCCCh--hhccCCCCCEEECcCC-cccCCc
Confidence 9998 88886 4888999999999985 454433
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=2.5e-14 Score=132.66 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=123.5
Q ss_pred CceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
.+.++..++++++.+..++ .+..+++|++|++++| .+..+| .+..+++|++|++++|. +..++. ++.+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence 3566778889999998886 6888999999999999 777887 58899999999999998 888776 88999999998
Q ss_pred ceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhh
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELV 162 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (511)
++++.+...+ . +.. ++|+.|++++|... .
T Consensus 92 L~~N~l~~l~-------~--------------------------~~~-~~L~~L~L~~N~l~-----------------~ 120 (263)
T 1xeu_A 92 VNRNRLKNLN-------G--------------------------IPS-ACLSRLFLDNNELR-----------------D 120 (263)
T ss_dssp CCSSCCSCCT-------T--------------------------CCC-SSCCEEECCSSCCS-----------------B
T ss_pred CCCCccCCcC-------c--------------------------ccc-CcccEEEccCCccC-----------------C
Confidence 7776543320 0 111 46777888776110 1
Q ss_pred hcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCc
Q 010426 163 LGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 229 (511)
...+..+++|+.|++++|.+..++. +. .+++|+.|++++|. +..++.+..+++|+.|++++|.
T Consensus 121 ~~~l~~l~~L~~L~Ls~N~i~~~~~-l~--~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 121 TDSLIHLKNLEILSIRNNKLKSIVM-LG--FLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCGG-GG--GCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred ChhhcCcccccEEECCCCcCCCChH-Hc--cCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 1245667788888888888777653 33 57888888888886 4444677788888888888765
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=4.8e-13 Score=118.30 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=95.5
Q ss_pred CCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcc--cCCCCCCCCCce
Q 010426 294 CKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVR--FPEEGFPTNLVE 371 (511)
Q Consensus 294 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~L~~ 371 (511)
..+++|+.|+++++ .++.++.....++|++|++++| .++.++ .+..+++|++|++++| .++. ......+++|++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCE
Confidence 34667788888774 4444442222257888888877 554443 5667777888888777 4443 333356677777
Q ss_pred EEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcC
Q 010426 372 LEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLE 451 (511)
Q Consensus 372 L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~ 451 (511)
|++ +.+.+++..+..+..+++|++|++++ |.. ++.++. + ..+++|++|++++|. ++.++ .+..+++|+
T Consensus 117 L~L---s~n~i~~~~~~~l~~l~~L~~L~L~~-n~~-i~~~~~--l--~~l~~L~~L~l~~n~-i~~~~--~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDI---SHSAHDDSILTKINTLPKVNSIDLSY-NGA-ITDIMP--L--KTLPELKSLNIQFDG-VHDYR--GIEDFPKLN 184 (197)
T ss_dssp EEC---CSSBCBGGGHHHHTTCSSCCEEECCS-CTB-CCCCGG--G--GGCSSCCEEECTTBC-CCCCT--TGGGCSSCC
T ss_pred EEe---cCCccCcHhHHHHhhCCCCCEEEccC-CCC-ccccHh--h--cCCCCCCEEECCCCC-CcChH--HhccCCCCC
Confidence 777 45556654455667777777777777 433 444442 2 456777777777777 76664 566777777
Q ss_pred EEeEecC
Q 010426 452 FLWIDDC 458 (511)
Q Consensus 452 ~L~l~~c 458 (511)
+|+++++
T Consensus 185 ~L~l~~N 191 (197)
T 4ezg_A 185 QLYAFSQ 191 (197)
T ss_dssp EEEECBC
T ss_pred EEEeeCc
Confidence 7777774
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=1.6e-13 Score=141.77 Aligned_cols=175 Identities=19% Similarity=0.185 Sum_probs=130.0
Q ss_pred ccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEE
Q 010426 271 AGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLC 350 (511)
Q Consensus 271 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 350 (511)
..++.|+.|++++| .+...-....+++|+.|++++| .+..++...-.++|+.|++++| .+..++ .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCTTGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCC-CCCCChHHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 45788999999885 4442223456889999999886 4555543222258999999999 566665 688899999999
Q ss_pred ecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEee
Q 010426 351 INRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNI 430 (511)
Q Consensus 351 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 430 (511)
+++| .+..++....+++|+.|+++ .+.++.+ ..+..+++|+.|++++ | . +..++. + ..+++|++|++
T Consensus 116 Ls~N-~l~~l~~l~~l~~L~~L~Ls---~N~l~~l--~~l~~l~~L~~L~Ls~-N-~-l~~~~~--l--~~l~~L~~L~L 182 (605)
T 1m9s_A 116 LEHN-GISDINGLVHLPQLESLYLG---NNKITDI--TVLSRLTKLDTLSLED-N-Q-ISDIVP--L--AGLTKLQNLYL 182 (605)
T ss_dssp CTTS-CCCCCGGGGGCTTCSEEECC---SSCCCCC--GGGGSCTTCSEEECCS-S-C-CCCCGG--G--TTCTTCCEEEC
T ss_pred ecCC-CCCCCccccCCCccCEEECC---CCccCCc--hhhcccCCCCEEECcC-C-c-CCCchh--h--ccCCCCCEEEC
Confidence 9999 67777666778899999994 4556655 3678899999999998 3 3 555543 2 56889999999
Q ss_pred cCCcCCcccCccccCCCCCcCEEeEecCCCCcccCC
Q 010426 431 IGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPE 466 (511)
Q Consensus 431 ~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~ 466 (511)
++|. ++.++ .+..+++|+.|+|++| .+...|.
T Consensus 183 s~N~-i~~l~--~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 183 SKNH-ISDLR--ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CSSC-CCBCG--GGTTCTTCSEEECCSE-EEECCCC
T ss_pred cCCC-CCCCh--HHccCCCCCEEEccCC-cCcCCcc
Confidence 9988 88875 5888999999999985 4444433
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=3.2e-12 Score=130.69 Aligned_cols=175 Identities=22% Similarity=0.278 Sum_probs=106.0
Q ss_pred CCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCCCCcCeE
Q 010426 246 SLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLPSSLKWL 325 (511)
Q Consensus 246 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 325 (511)
+++.|++.++. +..+. ...+++|+.|+++++ .++ .+| ..+++|+.|++++| .++.++. ++.+|++|
T Consensus 60 ~L~~L~Ls~n~-L~~lp-------~~l~~~L~~L~Ls~N-~l~-~ip-~~l~~L~~L~Ls~N-~l~~ip~--l~~~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLP-------DNLPPQITVLEITQN-ALI-SLP-ELPASLEYLDACDN-RLSTLPE--LPASLKHL 125 (571)
T ss_dssp TCSEEECCSSC-CSCCC-------SCCCTTCSEEECCSS-CCS-CCC-CCCTTCCEEECCSS-CCSCCCC--CCTTCCEE
T ss_pred CccEEEeCCCC-CCccC-------HhHcCCCCEEECcCC-CCc-ccc-cccCCCCEEEccCC-CCCCcch--hhcCCCEE
Confidence 67777777653 22221 112466777777773 555 566 56677777777774 4555554 44477777
Q ss_pred eeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCC
Q 010426 326 EIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCD 405 (511)
Q Consensus 326 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 405 (511)
++++| .++.+|. .+++|++|++++| .++.++. .+++|+.|++ +.|.++.++. +. ++|+.|++++
T Consensus 126 ~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~L---s~N~L~~lp~--l~--~~L~~L~Ls~-- 189 (571)
T 3cvr_A 126 DVDNN-QLTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSV---RNNQLTFLPE--LP--ESLEALDVST-- 189 (571)
T ss_dssp ECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEEC---CSSCCSCCCC--CC--TTCCEEECCS--
T ss_pred ECCCC-cCCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEEC---CCCCCCCcch--hh--CCCCEEECcC--
Confidence 77777 4555665 5677777777777 4555554 4567777777 3444555443 33 6777777777
Q ss_pred CCCccccCcccccccCCCcc-------ceEeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 406 DDEAECFPDEEMGMMLPTSL-------SYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
+. ++.+|. + ..+| +.|++++|. ++.+| ..+..+++|+.|+|++|+
T Consensus 190 N~-L~~lp~--~----~~~L~~~~~~L~~L~Ls~N~-l~~lp-~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 190 NL-LESLPA--V----PVRNHHSEETEIFFRCRENR-ITHIP-ENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SC-CSSCCC--C----C--------CCEEEECCSSC-CCCCC-GGGGGSCTTEEEECCSSS
T ss_pred CC-CCchhh--H----HHhhhcccccceEEecCCCc-ceecC-HHHhcCCCCCEEEeeCCc
Confidence 23 556553 1 1145 777777776 77776 445557777777777754
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=2.1e-12 Score=116.93 Aligned_cols=138 Identities=18% Similarity=0.246 Sum_probs=96.8
Q ss_pred cceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhh
Q 010426 310 LTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIH 387 (511)
Q Consensus 310 l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~ 387 (511)
++.++. .++++|++|++++|..-...+..+..+++|++|++++| .++.++.. ..+++|+.|++ +.+.++.+.+
T Consensus 31 l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~L---s~N~l~~l~~ 105 (229)
T 3e6j_A 31 HASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDL---GTNQLTVLPS 105 (229)
T ss_dssp CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC---CSSCCCCCCT
T ss_pred cCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEEC---CCCcCCccCh
Confidence 344443 23357777777777443333566777888888888888 55666543 45678888888 4556666666
Q ss_pred hhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 388 WGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 388 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
..+..+++|+.|++++ +. +..+|. .. ..+++|++|++++|. ++.++...+..+++|+.|++.+++
T Consensus 106 ~~~~~l~~L~~L~Ls~--N~-l~~lp~-~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCC--NK-LTELPR-GI--ERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTCTTCCEEECCS--SC-CCSCCT-TG--GGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hHhCcchhhCeEeccC--Cc-ccccCc-cc--ccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 6677888888888888 34 677775 44 677888888888887 888776667888888888888854
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=4.5e-12 Score=129.60 Aligned_cols=178 Identities=18% Similarity=0.233 Sum_probs=119.2
Q ss_pred CccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCCCCCCCC
Q 010426 219 SLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILPLCKNSQ 298 (511)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 298 (511)
+|+.|++++|. +..++. ..+++|+.|++.++.. ..+ + ..+++|+.|++++| .++ .+|. ...+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~-----~l~~~L~~L~Ls~N~l-~~i----p----~~l~~L~~L~Ls~N-~l~-~ip~-l~~~ 121 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPD-----NLPPQITVLEITQNAL-ISL----P----ELPASLEYLDACDN-RLS-TLPE-LPAS 121 (571)
T ss_dssp TCSEEECCSSC-CSCCCS-----CCCTTCSEEECCSSCC-SCC----C----CCCTTCCEEECCSS-CCS-CCCC-CCTT
T ss_pred CccEEEeCCCC-CCccCH-----hHcCCCCEEECcCCCC-ccc----c----cccCCCCEEEccCC-CCC-Ccch-hhcC
Confidence 78888888875 443431 1257788888887642 111 1 34678888888884 666 3555 3348
Q ss_pred CCEEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecc
Q 010426 299 LESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVD 378 (511)
Q Consensus 299 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 378 (511)
|+.|++++| .++.++. ..++|+.|++++| .++.+|. .+++|++|++++| .++.++. +.++|+.|+++
T Consensus 122 L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~~~L~~L~Ls--- 188 (571)
T 3cvr_A 122 LKHLDVDNN-QLTMLPE--LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LPESLEALDVS--- 188 (571)
T ss_dssp CCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECC---
T ss_pred CCEEECCCC-cCCCCCC--cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCC-CCCCcch--hhCCCCEEECc---
Confidence 888888885 4555665 3458888888888 5666765 5788888888888 5666666 33788888884
Q ss_pred cccccchhhhhhccCCcc-------cEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcc
Q 010426 379 VKMYKAIIHWGLHRLTSL-------RRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKM 438 (511)
Q Consensus 379 ~~~l~~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 438 (511)
.|.++.++. +.. +| +.|++++ +. ++.+|. .. ..+++|+.|++++|+ ++.
T Consensus 189 ~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~--N~-l~~lp~-~l--~~l~~L~~L~L~~N~-l~~ 244 (571)
T 3cvr_A 189 TNLLESLPA--VPV--RNHHSEETEIFFRCRE--NR-ITHIPE-NI--LSLDPTCTIILEDNP-LSS 244 (571)
T ss_dssp SSCCSSCCC--CC----------CCEEEECCS--SC-CCCCCG-GG--GGSCTTEEEECCSSS-CCH
T ss_pred CCCCCchhh--HHH--hhhcccccceEEecCC--Cc-ceecCH-HH--hcCCCCCEEEeeCCc-CCC
Confidence 455554443 322 55 8888888 34 777776 44 447888888888888 553
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=4.5e-13 Score=124.11 Aligned_cols=146 Identities=17% Similarity=0.125 Sum_probs=114.9
Q ss_pred CceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCC
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALS 82 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 82 (511)
.+++|++|++++|.|..+| ++..+++|++|++++| .+..++. ++.+++|++|++++|. +..+|.... ++|++|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEE
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEE
Confidence 5788999999999999997 7899999999999999 7888887 9999999999999999 888775433 8999998
Q ss_pred ceeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhh
Q 010426 83 NFIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELV 162 (511)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (511)
++++.+... ..+..+++|+.|++++|... .
T Consensus 113 L~~N~l~~~---------------------------------~~l~~l~~L~~L~Ls~N~i~-----------------~ 142 (263)
T 1xeu_A 113 LDNNELRDT---------------------------------DSLIHLKNLEILSIRNNKLK-----------------S 142 (263)
T ss_dssp CCSSCCSBS---------------------------------GGGTTCTTCCEEECTTSCCC-----------------B
T ss_pred ccCCccCCC---------------------------------hhhcCcccccEEECCCCcCC-----------------C
Confidence 777654322 11445568888888877111 1
Q ss_pred hcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCC
Q 010426 163 LGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCEN 207 (511)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 207 (511)
+..+..+++|+.|++++|.+..++ .+. .+++|+.|++++|..
T Consensus 143 ~~~l~~l~~L~~L~L~~N~i~~~~-~l~--~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 143 IVMLGFLSKLEVLDLHGNEITNTG-GLT--RLKKVNWIDLTGQKC 184 (263)
T ss_dssp CGGGGGCTTCCEEECTTSCCCBCT-TST--TCCCCCEEEEEEEEE
T ss_pred ChHHccCCCCCEEECCCCcCcchH-Hhc--cCCCCCEEeCCCCcc
Confidence 124566789999999999887773 333 689999999999873
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=2.7e-12 Score=116.28 Aligned_cols=147 Identities=24% Similarity=0.303 Sum_probs=108.6
Q ss_pred eccEeecCCCccccCCccccccccccEEeccCccccccc-cccccCcCccceEEecCcccccccCCc-ccCcCCCccCCc
Q 010426 6 HLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALSN 83 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~ 83 (511)
.-+.++.+++.+..+|..+. ++|++|+|++| .+..+ |..+..+++|++|++++|. +..+|.. ++.+++|+.|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEEC
Confidence 45678899999999997665 89999999999 55544 6678999999999999999 7888765 678888888876
Q ss_pred eeeecCCCccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhh
Q 010426 84 FIVGTDTKSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVL 163 (511)
Q Consensus 84 ~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (511)
+++.+... . .
T Consensus 96 s~N~l~~l----------~------------------------------------------------------------~ 105 (229)
T 3e6j_A 96 GTNQLTVL----------P------------------------------------------------------------S 105 (229)
T ss_dssp CSSCCCCC----------C------------------------------------------------------------T
T ss_pred CCCcCCcc----------C------------------------------------------------------------h
Confidence 65543221 0 0
Q ss_pred cCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEEecCCc
Q 010426 164 GKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLR 229 (511)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~ 229 (511)
..+..+++|+.|++++|.+..+|..+. .+++|+.|++++|. +..++ .+..+++|+.|++++|.
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELPRGIE--RLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTGG--GCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hHhCcchhhCeEeccCCcccccCcccc--cCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 123345677777777777777776664 57888888888886 44444 57778888888888876
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=6.4e-12 Score=113.01 Aligned_cols=146 Identities=16% Similarity=0.235 Sum_probs=93.1
Q ss_pred EEEEEccCCcceecccCCCCCcCeEeeccCcccccccc-cccCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEec
Q 010426 301 SLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPN-DMHELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRRV 377 (511)
Q Consensus 301 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~ 377 (511)
.++.++ ..++.++. .++++++.|++++| .++.++. .+..+++|++|++++| .++.+.. ...+++|++|++
T Consensus 15 ~v~c~~-~~l~~iP~-~l~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~L--- 87 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPT-NLPETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVL--- 87 (220)
T ss_dssp EEECTT-SCCSSCCS-SCCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEEC---
T ss_pred EEEcCC-CCcCcCCC-ccCcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEEC---
Confidence 444444 34555554 34457888888887 4444443 6677788888888887 5555432 245677777777
Q ss_pred ccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEec
Q 010426 378 DVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDD 457 (511)
Q Consensus 378 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 457 (511)
+.+.++.+++..+.++++|+.|++++ +. +..++...+ ..+++|++|++++|. ++.++...+..+++|++|++++
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~--N~-l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNA--NK-INCLRVDAF--QDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS--SC-CCCCCTTTT--TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCccCHhHccCCCCCCEEECCC--CC-CCEeCHHHc--CCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence 45566666655567777777777777 33 555543122 456777777777776 7766655667777777777777
Q ss_pred CC
Q 010426 458 CP 459 (511)
Q Consensus 458 c~ 459 (511)
++
T Consensus 162 N~ 163 (220)
T 2v9t_B 162 NP 163 (220)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=2.8e-14 Score=140.46 Aligned_cols=247 Identities=12% Similarity=0.041 Sum_probs=140.5
Q ss_pred CceeccEeecCCCcccc-----CCccccccccccEEeccCccccc----cccccc-------cCcCccceEEecCccccc
Q 010426 3 GWKHLRYLNLSDTRIRN-----LPKPTCSLINLQVLLLRDCYYLL----KLPSKL-------RNLINLRHLDIMGAYLIK 66 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~n~~~~----~l~~~~-------~~l~~L~~L~l~~~~~l~ 66 (511)
.+++|++|+|++|.|.. ++..+..+++|++|+|++| .+. .+|..+ ..+++|++|++++|. +.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG 107 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CC
Confidence 46789999999999874 4455788999999999997 333 344443 789999999999998 65
Q ss_pred c-----cCCcccCcCCCccCCceeeecCCCccCcccccc-ccccCceEEEccccCCCChhhhHHhccccccccceeEEee
Q 010426 67 E-----IPFGMKELKNLQALSNFIVGTDTKSSGLKDLKS-LAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQW 140 (511)
Q Consensus 67 ~-----l~~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~-L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 140 (511)
. +|..+..+++|++|+++++.+... ....+.. +..+. .... -...++|+.|++++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~l~--------------~~~~---~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ--AGAKIARALQELA--------------VNKK---AKNAPPLRSIICGR 168 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHH--HHHHHHHHHHHHH--------------HHHH---HHTCCCCCEEECCS
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHH--HHHHHHHHHHHHh--------------hhhh---cccCCCCcEEECCC
Confidence 4 666788999999999888766321 0000100 11000 0000 00015677777766
Q ss_pred ecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCc------cCCcccCCCCCCCccEEEEecCCCC----CC
Q 010426 141 RSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGK------KIPSWIADPSFSKMEVLGLENCENC----TS 210 (511)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~----~~ 210 (511)
|... ..........+..+++|+.|++++|.+. ..+..+. .+++|+.|++++|... ..
T Consensus 169 n~l~-----------~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~--~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 169 NRLE-----------NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp SCCT-----------GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHH
T ss_pred CCCC-----------cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh--cCCCccEEECcCCCCCcHHHHH
Confidence 6100 0011111123444567777777777654 1221332 4677777777777631 22
Q ss_pred CC-CCCCCCCccEEEecCCccceEeccC--CCCC--CCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccC
Q 010426 211 LP-SFGLLSSLKHLTVKGLRKLKSMGYG--EHCS--NPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNC 284 (511)
Q Consensus 211 ~~-~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 284 (511)
++ .+..+++|++|++++|.. ...... ...+ ..+++|+.|++.++..-..-...++......+++|+.|++++|
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCC-CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHccCCCcCEEECCCCCC-chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 33 456677777777777752 221000 0011 2267777777777653221000011111134688888888885
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=4.7e-12 Score=108.77 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=106.5
Q ss_pred CCCCcCeEeeccCcccc--cccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCc
Q 010426 318 LPSSLKWLEIENCEKLE--SLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTS 395 (511)
Q Consensus 318 ~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~ 395 (511)
.+++|++|++++|. ++ .+|..+..+++|++|++++| .++.+.....+++|++|+++ .+.++...+..+..+++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls---~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELS---ENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEE---SCCCCSCCCHHHHHCTT
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC-CCCChhhhccCCCCCEEECc---CCcCchHHHHHHhhCCC
Confidence 44689999999884 54 77878889999999999999 57766555778899999995 44555544456677999
Q ss_pred ccEEEEecCCCCCccccCcc-cccccCCCccceEeecCCcCCcccCc---cccCCCCCcCEEeEecCCCCcccCC
Q 010426 396 LRRLWIEGCDDDEAECFPDE-EMGMMLPTSLSYLNIIGFRNLKMLSS---KGFQSLTSLEFLWIDDCPNLTSFPE 466 (511)
Q Consensus 396 L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~~l~~L~~L~l~~c~~l~~~~~ 466 (511)
|++|++++ + . ++.++.. .+ ..+++|++|++++|+ ++.++. ..+..+++|++|++++| .+.++|.
T Consensus 97 L~~L~Ls~-N-~-l~~~~~~~~l--~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 97 LTHLNLSG-N-K-LKDISTLEPL--KKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CCEEECBS-S-S-CCSSGGGGGG--SSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCEEeccC-C-c-cCcchhHHHH--hcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 99999999 3 4 7776631 33 678999999999998 888874 47889999999999996 5555554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=6.9e-12 Score=112.77 Aligned_cols=146 Identities=17% Similarity=0.254 Sum_probs=95.3
Q ss_pred EEEEEccCCcceecccCCCCCcCeEeeccCcccccc-c-ccccCCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEEe
Q 010426 301 SLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESL-P-NDMHELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIRR 376 (511)
Q Consensus 301 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~ 376 (511)
.+++++ +.++.++. .++..+++|++++| .++.+ + ..+..+++|++|++++| .++.++. ...+++|++|++
T Consensus 15 ~l~~s~-n~l~~iP~-~~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L-- 88 (220)
T 2v70_A 15 TVDCSN-QKLNKIPE-HIPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILL-- 88 (220)
T ss_dssp EEECCS-SCCSSCCS-CCCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC--
T ss_pred EeEeCC-CCcccCcc-CCCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEEC--
Confidence 344444 23444433 33446667777776 34444 2 23567777888888777 5665544 355677888887
Q ss_pred cccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEe
Q 010426 377 VDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWID 456 (511)
Q Consensus 377 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~ 456 (511)
+.+.++.+.+..+..+++|++|++++ +. +..++...+ ..+++|++|++++|. ++.++...+..+++|++|+++
T Consensus 89 -s~N~l~~~~~~~~~~l~~L~~L~Ls~--N~-l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 89 -TSNRLENVQHKMFKGLESLKTLMLRS--NR-ITCVGNDSF--IGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp -CSSCCCCCCGGGGTTCSSCCEEECTT--SC-CCCBCTTSS--TTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred -CCCccCccCHhHhcCCcCCCEEECCC--Cc-CCeECHhHc--CCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEec
Confidence 55666666666677888888888888 33 666643133 567888888888877 777755778888888888888
Q ss_pred cCC
Q 010426 457 DCP 459 (511)
Q Consensus 457 ~c~ 459 (511)
+++
T Consensus 162 ~N~ 164 (220)
T 2v70_A 162 ANP 164 (220)
T ss_dssp SCC
T ss_pred CcC
Confidence 854
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=4.5e-12 Score=123.29 Aligned_cols=170 Identities=17% Similarity=0.177 Sum_probs=121.1
Q ss_pred CeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCC---CCcCeEeeccCccccccc-ccccCCCCcCeEEec
Q 010426 277 RELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLP---SSLKWLEIENCEKLESLP-NDMHELNYLQHLCIN 352 (511)
Q Consensus 277 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~ 352 (511)
+.+++++ +.++ .+|....+.++.|++++| .++.++...+. ++|+.|++++| .++.++ ..+..+++|++|+++
T Consensus 21 ~~l~c~~-~~l~-~iP~~~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSK-QQLP-NVPQSLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCS-SCCS-SCCSSCCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcC-ccCccCCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 4566655 4566 567666677888888884 56666654432 58888888888 455554 467888889999998
Q ss_pred CCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccc--cCCCccceE
Q 010426 353 RCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGM--MLPTSLSYL 428 (511)
Q Consensus 353 ~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~L~~L 428 (511)
+| .++.++.. ..+++|+.|++ +.+.++.+.+..+..+++|+.|++++ +. +..++. ..+. ..+++|+.|
T Consensus 97 ~N-~l~~~~~~~~~~l~~L~~L~L---~~N~i~~~~~~~~~~l~~L~~L~L~~--N~-l~~l~~-~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 97 SN-HLHTLDEFLFSDLQALEVLLL---YNNHIVVVDRNAFEDMAQLQKLYLSQ--NQ-ISRFPV-ELIKDGNKLPKLMLL 168 (361)
T ss_dssp SS-CCCEECTTTTTTCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCS--SC-CCSCCG-GGTC----CTTCCEE
T ss_pred CC-cCCcCCHHHhCCCcCCCEEEC---CCCcccEECHHHhCCcccCCEEECCC--Cc-CCeeCH-HHhcCcccCCcCCEE
Confidence 88 56666543 56788888888 55666766666788888888888888 34 777775 3321 247888888
Q ss_pred eecCCcCCcccCccccCCCCC--cCEEeEecCC
Q 010426 429 NIIGFRNLKMLSSKGFQSLTS--LEFLWIDDCP 459 (511)
Q Consensus 429 ~l~~~~~l~~l~~~~~~~l~~--L~~L~l~~c~ 459 (511)
++++|. ++.++...+..++. ++.|++.+++
T Consensus 169 ~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 169 DLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence 888887 88887667777776 4788888755
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=6.9e-12 Score=112.77 Aligned_cols=146 Identities=11% Similarity=0.153 Sum_probs=100.7
Q ss_pred CeeeeccCCCcCcCCCCCCCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCcccccccccccCCCCcCeEEecCC
Q 010426 277 RELSILNCSKFSGILPLCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRC 354 (511)
Q Consensus 277 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 354 (511)
+.++.++ ..++ .+|....++++.|+++++ .++.++...+. ++|+.|++++|..-...|..+..+++|++|++++|
T Consensus 14 ~~v~c~~-~~l~-~iP~~l~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRG-KGLT-EIPTNLPETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTT-SCCS-SCCSSCCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCC-CCcC-cCCCccCcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3455555 3555 566655678888888884 56666654333 58888888888443333667788888888888888
Q ss_pred CCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecC
Q 010426 355 PSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIG 432 (511)
Q Consensus 355 ~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 432 (511)
.++.++.. ..+++|+.|++ +.+.++.+.+..+..+++|+.|++++ +. ++.++...+ ..+++|++|++++
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~L---~~N~l~~~~~~~~~~l~~L~~L~L~~--N~-l~~~~~~~~--~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 91 -KITELPKSLFEGLFSLQLLLL---NANKINCLRVDAFQDLHNLNLLSLYD--NK-LQTIAKGTF--SPLRAIQTMHLAQ 161 (220)
T ss_dssp -CCCCCCTTTTTTCTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECCS--SC-CSCCCTTTT--TTCTTCCEEECCS
T ss_pred -cCCccCHhHccCCCCCCEEEC---CCCCCCEeCHHHcCCCCCCCEEECCC--Cc-CCEECHHHH--hCCCCCCEEEeCC
Confidence 66666653 45678888888 56667776666778888888888888 33 666665223 5577888888888
Q ss_pred Cc
Q 010426 433 FR 434 (511)
Q Consensus 433 ~~ 434 (511)
|+
T Consensus 162 N~ 163 (220)
T 2v9t_B 162 NP 163 (220)
T ss_dssp SC
T ss_pred CC
Confidence 77
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=1e-13 Score=135.08 Aligned_cols=78 Identities=14% Similarity=-0.008 Sum_probs=54.1
Q ss_pred EeecCCCccccC-CccccccccccEEeccCcccccccc-----ccccCcC-ccceEEecCcccccccC-CcccCc-----
Q 010426 9 YLNLSDTRIRNL-PKPTCSLINLQVLLLRDCYYLLKLP-----SKLRNLI-NLRHLDIMGAYLIKEIP-FGMKEL----- 75 (511)
Q Consensus 9 ~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~l~-----~~~~~l~-~L~~L~l~~~~~l~~l~-~~l~~l----- 75 (511)
++.++.|.++.. |..+...++|++|+|++| .+...+ ..+..++ +|++|++++|. +...+ ..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccC
Confidence 357788888754 444555566999999999 565554 4567788 89999999998 65543 335544
Q ss_pred CCCccCCceeeec
Q 010426 76 KNLQALSNFIVGT 88 (511)
Q Consensus 76 ~~L~~L~~~~~~~ 88 (511)
++|++|+++++.+
T Consensus 80 ~~L~~L~Ls~n~l 92 (362)
T 3goz_A 80 ANVTSLNLSGNFL 92 (362)
T ss_dssp TTCCEEECCSSCG
T ss_pred CCccEEECcCCcC
Confidence 7777777666654
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=1.9e-11 Score=109.01 Aligned_cols=128 Identities=26% Similarity=0.423 Sum_probs=68.8
Q ss_pred CCcCeEeeccCcccccccc-cccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcc
Q 010426 320 SSLKWLEIENCEKLESLPN-DMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSL 396 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L 396 (511)
+++++|++++| .++.++. .+..+++|++|++++| .++.++.. ..+++|++|++ +.+.++.+.+..+..+++|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNL---STNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC---CSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEEC---CCCcCCccCHhHhcCccCC
Confidence 35555555555 2333332 3455666666666665 44444332 34456666666 3334444444445566666
Q ss_pred cEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecC
Q 010426 397 RRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDC 458 (511)
Q Consensus 397 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 458 (511)
++|++++ +. +..++...+ ..+++|++|++++|. ++.++...+..+++|++|++++|
T Consensus 103 ~~L~L~~--N~-l~~~~~~~~--~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 103 KELALNT--NQ-LQSLPDGVF--DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CEEECCS--SC-CCCCCTTTT--TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCC--Cc-CcccCHhHh--ccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 6666666 22 555543112 445666666666665 66655444566666666666664
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=2.4e-13 Score=132.43 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=65.5
Q ss_pred ceeccEeecCCCccccCC-----ccccccc-cccEEeccCcccccc-ccccccCc-----CccceEEecCcccccccCCc
Q 010426 4 WKHLRYLNLSDTRIRNLP-----KPTCSLI-NLQVLLLRDCYYLLK-LPSKLRNL-----INLRHLDIMGAYLIKEIPFG 71 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~~l~-----~~~~~l~-~L~~L~L~~n~~~~~-l~~~~~~l-----~~L~~L~l~~~~~l~~l~~~ 71 (511)
.++|++|+|++|.|...+ +.+..++ +|++|+|++| .+.. .+..+..+ ++|++|++++|. +...+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 455999999999999775 5678888 9999999999 5544 35556654 999999999999 6655433
Q ss_pred -----ccCc-CCCccCCceeeecCC
Q 010426 72 -----MKEL-KNLQALSNFIVGTDT 90 (511)
Q Consensus 72 -----l~~l-~~L~~L~~~~~~~~~ 90 (511)
+..+ ++|++|+++++.+..
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHHHHhCCCCccEEECcCCcCCc
Confidence 4444 899999988776543
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=1.5e-11 Score=110.54 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=118.3
Q ss_pred cCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCC---CCCCCCCceEEEEecccccccchhhhhhccCCcccE
Q 010426 322 LKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPE---EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRR 398 (511)
Q Consensus 322 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~ 398 (511)
-+.++++++ .++.+|..+ .+.+++|++++| .++.++. ...+++|+.|++ +.+.++.+.+..+.++++|++
T Consensus 13 ~~~l~~s~n-~l~~iP~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L---~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKIPEHI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINF---SNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TTEEECCSS-CCSSCCSCC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEEC---CSSCCCEECTTTTTTCTTCCE
T ss_pred CCEeEeCCC-CcccCccCC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEEC---CCCcCCEECHHHhCCCCCCCE
Confidence 357888888 677788755 456799999999 6776643 256799999999 566788877778999999999
Q ss_pred EEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcccEE
Q 010426 399 LWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSILWL 476 (511)
Q Consensus 399 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L 476 (511)
|++++ +. +..++...+ ..+++|++|++++|. ++.++...+..+++|++|++++ ++++.++...+ .++|++|
T Consensus 86 L~Ls~--N~-l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 86 ILLTS--NR-LENVQHKMF--KGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp EECCS--SC-CCCCCGGGG--TTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEE
T ss_pred EECCC--Cc-cCccCHhHh--cCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEE
Confidence 99999 44 777775223 678999999999999 8888668899999999999999 57777744333 4799999
Q ss_pred EecCCc
Q 010426 477 NIWSCP 482 (511)
Q Consensus 477 ~l~~c~ 482 (511)
++.+++
T Consensus 159 ~L~~N~ 164 (220)
T 2v70_A 159 NLLANP 164 (220)
T ss_dssp ECCSCC
T ss_pred EecCcC
Confidence 999865
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=6.7e-12 Score=122.07 Aligned_cols=169 Identities=16% Similarity=0.152 Sum_probs=129.7
Q ss_pred CEEEEEccCCcceecccCCCCCcCeEeeccCcccccccc-ccc-CCCCcCeEEecCCCCCcccCC--CCCCCCCceEEEE
Q 010426 300 ESLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPN-DMH-ELNYLQHLCINRCPSIVRFPE--EGFPTNLVELEIR 375 (511)
Q Consensus 300 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~-~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~ 375 (511)
+.++.++ ..++.++. .++..++.|++++| .++.++. .+. .+++|++|++++| .++.++. ...+++|++|++
T Consensus 21 ~~l~c~~-~~l~~iP~-~~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L- 95 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQ-SLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL- 95 (361)
T ss_dssp TEEECCS-SCCSSCCS-SCCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC-
T ss_pred CEEEeCC-CCcCccCc-cCCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC-
Confidence 4666666 46777765 45668999999999 5666554 455 8999999999999 6777764 366799999999
Q ss_pred ecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCcccc---CCCCCcCE
Q 010426 376 RVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGF---QSLTSLEF 452 (511)
Q Consensus 376 ~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~---~~l~~L~~ 452 (511)
+.+.++.+.+..+..+++|+.|++++ +. +..++...+ ..+++|++|++++|. ++.++...+ ..+++|+.
T Consensus 96 --s~N~l~~~~~~~~~~l~~L~~L~L~~--N~-i~~~~~~~~--~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 96 --SSNHLHTLDEFLFSDLQALEVLLLYN--NH-IVVVDRNAF--EDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp --CSSCCCEECTTTTTTCTTCCEEECCS--SC-CCEECTTTT--TTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCE
T ss_pred --CCCcCCcCCHHHhCCCcCCCEEECCC--Cc-ccEECHHHh--CCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCE
Confidence 56678887777789999999999999 34 777754234 678999999999998 999986666 56999999
Q ss_pred EeEecCCCCcccCCCCC--CCc--ccEEEecCCc
Q 010426 453 LWIDDCPNLTSFPEAGL--PSS--ILWLNIWSCP 482 (511)
Q Consensus 453 L~l~~c~~l~~~~~~~~--~~~--L~~L~l~~c~ 482 (511)
|+|++ ++++.+|...+ .+. ++.|++.+++
T Consensus 168 L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 168 LDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred EECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 99999 57887764222 233 5789998855
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=3.5e-12 Score=109.60 Aligned_cols=82 Identities=23% Similarity=0.236 Sum_probs=63.4
Q ss_pred ceeccEeecCCCccc--cCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccc-cCCcccCcCCCcc
Q 010426 4 WKHLRYLNLSDTRIR--NLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKE-IPFGMKELKNLQA 80 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~-l~~~l~~l~~L~~ 80 (511)
.++|+.|++++|.+. .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|. +.. +|..++.+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCE
Confidence 467888888888887 78877888888888888888 56666 558888888888888888 655 5544666888888
Q ss_pred CCceeeec
Q 010426 81 LSNFIVGT 88 (511)
Q Consensus 81 L~~~~~~~ 88 (511)
|+++++.+
T Consensus 100 L~Ls~N~l 107 (168)
T 2ell_A 100 LNLSGNKL 107 (168)
T ss_dssp EECBSSSC
T ss_pred EeccCCcc
Confidence 87766654
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=2.1e-11 Score=108.61 Aligned_cols=157 Identities=21% Similarity=0.210 Sum_probs=100.2
Q ss_pred CCCCCCCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCcccccccc-cccCCCCcCeEEecCCCCCcccCCC--C
Q 010426 290 ILPLCKNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLPN-DMHELNYLQHLCINRCPSIVRFPEE--G 364 (511)
Q Consensus 290 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~--~ 364 (511)
.+|....++|++|+++++ .++.++...+. ++|++|++++| .++.++. .+..+++|++|++++| .++.++.. .
T Consensus 21 ~~p~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 97 (208)
T 2o6s_A 21 SVPTGIPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFD 97 (208)
T ss_dssp SCCSCCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCCCCCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhc
Confidence 455555567777777774 44455443322 57888888877 4445544 3567888888888888 56655543 4
Q ss_pred CCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCcccc
Q 010426 365 FPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGF 444 (511)
Q Consensus 365 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 444 (511)
.+++|++|++ +.+.++.+.+..+..+++|++|++++ + . ++.++...+ ..+++|++|++++|+ +.
T Consensus 98 ~l~~L~~L~L---~~N~l~~~~~~~~~~l~~L~~L~l~~-N-~-l~~~~~~~~--~~l~~L~~L~l~~N~-~~------- 161 (208)
T 2o6s_A 98 KLTQLKELAL---NTNQLQSLPDGVFDKLTQLKDLRLYQ-N-Q-LKSVPDGVF--DRLTSLQYIWLHDNP-WD------- 161 (208)
T ss_dssp TCTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECCS-S-C-CSCCCTTTT--TTCTTCCEEECCSCC-BC-------
T ss_pred CccCCCEEEc---CCCcCcccCHhHhccCCcCCEEECCC-C-c-cceeCHHHh--ccCCCccEEEecCCC-ee-------
Confidence 5678888888 45566666655677788888888888 3 3 666664122 557788888888876 22
Q ss_pred CCCCCcCEEeEecCCCCcccC
Q 010426 445 QSLTSLEFLWIDDCPNLTSFP 465 (511)
Q Consensus 445 ~~l~~L~~L~l~~c~~l~~~~ 465 (511)
..++.|+.|+++.+..-..+|
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBB
T ss_pred cCCCCHHHHHHHHHhCCceee
Confidence 345677777777643333444
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=3.7e-12 Score=122.26 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=72.1
Q ss_pred CCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCccc
Q 010426 320 SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLR 397 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~ 397 (511)
.++..+.+.+.-...........+++|+++++++| .++.++.. ..+++|+++++. .+ ++.+....|.++++|+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~---~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLP---HN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECC---TT-CCEECTTTTTTCTTCC
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECC---cc-cceehHHHhhCChhcc
Confidence 45566666554211111111224677777777776 45665544 345667777764 22 5556666677777777
Q ss_pred -EEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEe
Q 010426 398 -RLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLW 454 (511)
Q Consensus 398 -~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~ 454 (511)
.+++.+ . ++.++...+ ..+++|++++++++. ++.++...|.++++|+.++
T Consensus 277 ~~l~l~~-~---l~~I~~~aF--~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 277 GTLELPA-S---VTAIEFGAF--MGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECT-T---CCEECTTTT--TTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred EEEEEcc-c---ceEEchhhh--hCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 777766 2 555554233 566777777776655 7777656677777777665
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=3.4e-14 Score=145.92 Aligned_cols=206 Identities=16% Similarity=0.067 Sum_probs=120.9
Q ss_pred cccccccEEeccCccccccccccccCcCccceEEecCcc-------------cccccCCcccCcCCCccCC-ceeeecCC
Q 010426 25 CSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAY-------------LIKEIPFGMKELKNLQALS-NFIVGTDT 90 (511)
Q Consensus 25 ~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~-------------~l~~l~~~l~~l~~L~~L~-~~~~~~~~ 90 (511)
..+++|+.|+|++| .+..+|+.++.+++|+.|++++|. .....|..++.+++|+.|+ +..+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~--- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY--- 421 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH---
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc---
Confidence 34556666666666 555666666666666666665442 1233445567777777776 22221
Q ss_pred CccCccccccccccCceEEEccccCCCChhhhHHhccccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCC
Q 010426 91 KSSGLKDLKSLAFVGGELSISGLENVIYPWEASEAMLCEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCT 170 (511)
Q Consensus 91 ~~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (511)
+..+..+ .+..+.+ .. + ....|+.|++++|... .++.+..++
T Consensus 422 -------~~~L~~l--~l~~n~i-------~~----l-~~~~L~~L~Ls~n~l~-----------------~lp~~~~l~ 463 (567)
T 1dce_A 422 -------LDDLRSK--FLLENSV-------LK----M-EYADVRVLHLAHKDLT-----------------VLCHLEQLL 463 (567)
T ss_dssp -------HHHHHHH--HHHHHHH-------HH----H-HHTTCSEEECTTSCCS-----------------SCCCGGGGT
T ss_pred -------cchhhhh--hhhcccc-------cc----c-CccCceEEEecCCCCC-----------------CCcCccccc
Confidence 1112111 0000000 00 0 0124778888777111 122356678
Q ss_pred CCceEEEecCCCccCCcccCCCCCCCccEEEEecCCCCCCCCCCCCCCCccEEEecCCccceEe-ccCCCCCCCCCCCCe
Q 010426 171 SIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCENCTSLPSFGLLSSLKHLTVKGLRKLKSM-GYGEHCSNPFQSLET 249 (511)
Q Consensus 171 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~ 249 (511)
+|+.|++++|.+..+|..+. .+++|+.|++++|. +..+|.++.+++|+.|++++|...... + ..+..+++|+.
T Consensus 464 ~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p---~~l~~l~~L~~ 537 (567)
T 1dce_A 464 LVTHLDLSHNRLRALPPALA--ALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNRLQQSAAI---QPLVSCPRLVL 537 (567)
T ss_dssp TCCEEECCSSCCCCCCGGGG--GCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCCSSSTT---GGGGGCTTCCE
T ss_pred cCcEeecCcccccccchhhh--cCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCCCCCCCCCc---HHHhcCCCCCE
Confidence 89999999988888887665 68899999999887 455778888899999999887632221 3 33455888999
Q ss_pred EEcCCCCCchhhhhhccccccccCCCcCeee
Q 010426 250 LWFEDLPEWEYWDTKFEENGVAGFSSLRELS 280 (511)
Q Consensus 250 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 280 (511)
|++++++.-.... ........+|+|+.|+
T Consensus 538 L~L~~N~l~~~~~--~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 538 LNLQGNSLCQEEG--IQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECTTSGGGGSSS--CTTHHHHHCTTCSEEE
T ss_pred EEecCCcCCCCcc--HHHHHHHHCcccCccC
Confidence 9998875221111 1111123478888875
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1.4e-11 Score=103.39 Aligned_cols=128 Identities=17% Similarity=0.167 Sum_probs=96.9
Q ss_pred CCcCeEeeccCccc-ccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccE
Q 010426 320 SSLKWLEIENCEKL-ESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRR 398 (511)
Q Consensus 320 ~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~ 398 (511)
++++.|++++|..- ..+|..+..+++|++|++++| .++.+.....+++|+.|++ +.+.++...+..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLEL---SDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEEC---CSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEEC---CCCcccchHHHHhhhCCCCCE
Confidence 58999999999543 378888889999999999999 6676655567889999999 555666644556677899999
Q ss_pred EEEecCCCCCccccCcc-cccccCCCccceEeecCCcCCcccCc---cccCCCCCcCEEeEec
Q 010426 399 LWIEGCDDDEAECFPDE-EMGMMLPTSLSYLNIIGFRNLKMLSS---KGFQSLTSLEFLWIDD 457 (511)
Q Consensus 399 L~l~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~~l~~L~~L~l~~ 457 (511)
|++++ + . ++.++.. .+ ..+++|++|++++|+ ++.++. ..+..+++|+.|++++
T Consensus 93 L~ls~-N-~-i~~~~~~~~~--~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSG-N-K-IKDLSTIEPL--KKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTT-S-C-CCSHHHHGGG--GGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCC-C-c-CCChHHHHHH--hhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 99998 3 3 6665420 33 668889999999987 888774 4677888888887753
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=9.3e-11 Score=102.94 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=61.6
Q ss_pred ccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCc-ccCcCCCccCCcee
Q 010426 7 LRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALSNFI 85 (511)
Q Consensus 7 Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~~~ 85 (511)
-++++++++.+..+|..+. ++|++|++++| .+..+|..+..+++|++|++++|. +..++.. |..+++|++|++++
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC
Confidence 3678999999999987664 68999999999 777888889999999999999998 7777644 77777777776554
Q ss_pred ee
Q 010426 86 VG 87 (511)
Q Consensus 86 ~~ 87 (511)
+.
T Consensus 88 N~ 89 (193)
T 2wfh_A 88 NR 89 (193)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=7.2e-12 Score=105.23 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=60.1
Q ss_pred CceeccEeecCCCccc--cCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccc-cCCcccCcCCCc
Q 010426 3 GWKHLRYLNLSDTRIR--NLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKE-IPFGMKELKNLQ 79 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~-l~~~l~~l~~L~ 79 (511)
..++|+.|++++|.+. .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|. +.. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCC
Confidence 3467888888888887 77777788888888888888 55555 557888888888888887 555 555566677777
Q ss_pred cCCceeee
Q 010426 80 ALSNFIVG 87 (511)
Q Consensus 80 ~L~~~~~~ 87 (511)
+|+++++.
T Consensus 92 ~L~ls~N~ 99 (149)
T 2je0_A 92 HLNLSGNK 99 (149)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 77655443
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=5e-11 Score=103.12 Aligned_cols=128 Identities=14% Similarity=0.076 Sum_probs=60.6
Q ss_pred CCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEE
Q 010426 320 SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRL 399 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L 399 (511)
.+|++|++++| .++.++......++|++|++++| .++.++....+++|+.|++ +.+.++.+++..+..+++|++|
T Consensus 19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLV---NNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEEC---CSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEEC---CCCcccccCcchhhcCCCCCEE
Confidence 35666666665 44444433333346666666666 4444433344455555555 3334444433333555555555
Q ss_pred EEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCcc---ccCCCCCcCEEeEec
Q 010426 400 WIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSK---GFQSLTSLEFLWIDD 457 (511)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~---~~~~l~~L~~L~l~~ 457 (511)
++++ +. +..++.... ...+++|++|++++|+ +..++.. .+..+++|+.|++++
T Consensus 94 ~L~~--N~-i~~~~~~~~-l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 94 ILTN--NS-LVELGDLDP-LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ECCS--CC-CCCGGGGGG-GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ECCC--Cc-CCcchhhHh-hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 5555 22 444442111 1344555555555555 4444411 244455555555544
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=1.6e-10 Score=110.77 Aligned_cols=219 Identities=10% Similarity=0.078 Sum_probs=106.9
Q ss_pred ceeccEeecCCCccc--------------------cCC-ccccc--------cccccEEeccCcccccccc-ccccCcCc
Q 010426 4 WKHLRYLNLSDTRIR--------------------NLP-KPTCS--------LINLQVLLLRDCYYLLKLP-SKLRNLIN 53 (511)
Q Consensus 4 l~~Lr~L~L~~n~i~--------------------~l~-~~~~~--------l~~L~~L~L~~n~~~~~l~-~~~~~l~~ 53 (511)
+++|++|+|++|+|. .+| ..|.. +++|+.|+|.+ .+..++ .+|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 567999999999988 344 23556 67777777766 344444 34667777
Q ss_pred cceEEecCcccccccCCc-ccCcCCCccCCceeeecCCC-----ccCccccccccccCceEEEccccCCCChhhhHHhcc
Q 010426 54 LRHLDIMGAYLIKEIPFG-MKELKNLQALSNFIVGTDTK-----SSGLKDLKSLAFVGGELSISGLENVIYPWEASEAML 127 (511)
Q Consensus 54 L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~~~~~~~~~-----~~~~~~l~~L~~l~~~l~~~~~~~~~~~~~~~~~~l 127 (511)
|+.+++++|. +..++.. |..+.++..+.......... ...+..+..+. ..+.. .............-
T Consensus 126 L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~---~~i~~---~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 126 LKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE---TTIQV---GAMGKLEDEIMKAG 198 (329)
T ss_dssp CCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE---EEEEE---CTTCCHHHHHHHTT
T ss_pred cceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc---eeEEe---cCCCcHHHHHhhcc
Confidence 7777777766 5555544 55555555444221100000 00111111111 00001 01111111111111
Q ss_pred ccccccceeEEeeecccccCCCCCCCcchhhhhhhhcCCCCCCCCceEEEecCCCccCCcccCCCCCCCccEEEEecCCC
Q 010426 128 CEKQYLEALSLQWRSQLQWGSQFDDSRNESREELVLGKLKPCTSIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCEN 207 (511)
Q Consensus 128 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 207 (511)
....+++.+.+.+. ... .....+ ...+++|+.++++.+.+..++...+. .+++|+.+++.++
T Consensus 199 ~~~~~~~~l~~~~~-----------l~~--~~~~~l--~~~~~~L~~l~L~~n~i~~I~~~aF~-~~~~L~~l~l~~n-- 260 (329)
T 3sb4_A 199 LQPRDINFLTIEGK-----------LDN--ADFKLI--RDYMPNLVSLDISKTNATTIPDFTFA-QKKYLLKIKLPHN-- 260 (329)
T ss_dssp CCGGGCSEEEEEEC-----------CCH--HHHHHH--HHHCTTCCEEECTTBCCCEECTTTTT-TCTTCCEEECCTT--
T ss_pred cCccccceEEEeee-----------ecH--HHHHHH--HHhcCCCeEEECCCCCcceecHhhhh-CCCCCCEEECCcc--
Confidence 12234445555443 000 000000 01246777777777777666655443 5777777777765
Q ss_pred CCCCC--CCCCCCCcc-EEEecCCccceEeccCCCCCCCCCCCCeEEcC
Q 010426 208 CTSLP--SFGLLSSLK-HLTVKGLRKLKSMGYGEHCSNPFQSLETLWFE 253 (511)
Q Consensus 208 ~~~~~--~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 253 (511)
+..++ .|..+++|+ .+++.+ .+..++ ...+..+++|+.+++.
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~--~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA--SVTAIE--FGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT--TCCEEC--TTTTTTCTTEEEEEEC
T ss_pred cceehHHHhhCChhccEEEEEcc--cceEEc--hhhhhCCccCCEEEeC
Confidence 44444 566777777 777765 344332 2333445555555553
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=1.7e-11 Score=106.16 Aligned_cols=82 Identities=20% Similarity=0.125 Sum_probs=55.8
Q ss_pred CceeccEeecCCCccccCCcccccc-ccccEEeccCccccccccccccCcCccceEEecCcccccccCCcc-cCcCCCcc
Q 010426 3 GWKHLRYLNLSDTRIRNLPKPTCSL-INLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGM-KELKNLQA 80 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~~~~~~l-~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~ 80 (511)
++.+|+.|++++|.|..+|. +..+ ++|++|++++| .+..+ +.++.+++|++|++++|. +..+|..+ +.+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCE
Confidence 45677778888777777654 4444 37888888877 55555 457777778888887777 66666553 67777777
Q ss_pred CCceeeec
Q 010426 81 LSNFIVGT 88 (511)
Q Consensus 81 L~~~~~~~ 88 (511)
|+++++.+
T Consensus 93 L~L~~N~i 100 (176)
T 1a9n_A 93 LILTNNSL 100 (176)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 76655544
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=2.5e-10 Score=100.13 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=32.0
Q ss_pred ccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecC
Q 010426 382 YKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDC 458 (511)
Q Consensus 382 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 458 (511)
++.+.+..+.++++|++|++++ +. +..++...+ ..+++|++|++++|. ++.++...+..+++|++|+++++
T Consensus 66 l~~~~~~~~~~l~~L~~L~Ls~--N~-l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 66 LTGIEPNAFEGASHIQELQLGE--NK-IKEISNKMF--LGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCBCTTTTTTCTTCCEEECCS--CC-CCEECSSSS--TTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCcCHhHcCCcccCCEEECCC--Cc-CCccCHHHh--cCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence 3333333444445555555554 22 444433112 334555555555554 44443344555555555555553
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.7e-10 Score=99.93 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=51.8
Q ss_pred EEEEEccCCcceecccCCCCCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecc
Q 010426 301 SLCIRYCDSLTFIARRKLPSSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVD 378 (511)
Q Consensus 301 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~ 378 (511)
.+++++ +.++.++. .+++++++|++++| .++.+|..+..+++|++|++++| .++.++.. ..+++|++|++ +
T Consensus 14 ~l~~~~-~~l~~ip~-~~~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~L---s 86 (193)
T 2wfh_A 14 VVRCSN-KGLKVLPK-GIPRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLIL---S 86 (193)
T ss_dssp EEECTT-SCCSSCCS-CCCTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC---C
T ss_pred EEEcCC-CCCCcCCC-CCCCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEEC---C
Confidence 455544 34555553 23457777777777 45566666667777777777766 44544332 33455555555 3
Q ss_pred cccccchhhhhhccCCcccEEEEec
Q 010426 379 VKMYKAIIHWGLHRLTSLRRLWIEG 403 (511)
Q Consensus 379 ~~~l~~~~~~~~~~l~~L~~L~l~~ 403 (511)
.+.++.+.+..+..+++|+.|++++
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCccCEeCHHHhCCCCCCCEEECCC
Confidence 3344444443444444444444444
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=2.4e-10 Score=100.26 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=60.6
Q ss_pred ccEeecCCCccccCCccccccccccEEeccCcccccccccc--ccCcCccceEEecCccccccc-CCcccCcCCCccCCc
Q 010426 7 LRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSK--LRNLINLRHLDIMGAYLIKEI-PFGMKELKNLQALSN 83 (511)
Q Consensus 7 Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~--~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~~ 83 (511)
-++++++++.+..+|..+.. +|++|++++| .+..++.. ++.+++|++|++++|. +..+ |..++.+++|++|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEEC
Confidence 37899999999999877653 8999999999 67777643 8899999999999998 6666 455777777777776
Q ss_pred eeee
Q 010426 84 FIVG 87 (511)
Q Consensus 84 ~~~~ 87 (511)
+++.
T Consensus 86 s~N~ 89 (192)
T 1w8a_A 86 GENK 89 (192)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 5543
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=1.1e-09 Score=94.64 Aligned_cols=84 Identities=23% Similarity=0.325 Sum_probs=44.4
Q ss_pred CCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccC
Q 010426 366 PTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQ 445 (511)
Q Consensus 366 ~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 445 (511)
+++|++|++ +.+.++.+.+..+..+++|++|++++ +. ++.++...+ ..+++|++|++++|. ++.++...+.
T Consensus 51 l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~--N~-l~~~~~~~~--~~l~~L~~L~l~~N~-l~~~~~~~~~ 121 (177)
T 2o6r_A 51 LTQLTKLSL---SQNQIQSLPDGVFDKLTKLTILYLHE--NK-LQSLPNGVF--DKLTQLKELALDTNQ-LKSVPDGIFD 121 (177)
T ss_dssp CTTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECCS--SC-CCCCCTTTT--TTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred cccccEEEC---CCCcceEeChhHccCCCccCEEECCC--CC-ccccCHHHh--hCCcccCEEECcCCc-ceEeCHHHhc
Confidence 344444444 23333333333445556666666666 22 455543112 345666666666665 6666544456
Q ss_pred CCCCcCEEeEecC
Q 010426 446 SLTSLEFLWIDDC 458 (511)
Q Consensus 446 ~l~~L~~L~l~~c 458 (511)
.+++|++|+++++
T Consensus 122 ~l~~L~~L~l~~N 134 (177)
T 2o6r_A 122 RLTSLQKIWLHTN 134 (177)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCcccCEEEecCC
Confidence 6666666666664
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.03 E-value=1.7e-08 Score=99.19 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=49.0
Q ss_pred ccccCC-ccccccccccEEeccCcccccccc-ccccCcCccceEEecCcccccccCCc-ccCcCCCccCC
Q 010426 16 RIRNLP-KPTCSLINLQVLLLRDCYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALS 82 (511)
Q Consensus 16 ~i~~l~-~~~~~l~~L~~L~L~~n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~ 82 (511)
.+..|. .+|.++.+|+.+.+..+ +..++ .+|.++.+|+.+++.++ ++.++.. +..+.+|+.+.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~ 123 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSIL 123 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCC
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhc
Confidence 355675 55999999999999854 66665 56899999999999765 5677755 78888888765
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=2.5e-09 Score=92.42 Aligned_cols=125 Identities=23% Similarity=0.340 Sum_probs=96.9
Q ss_pred cCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCcc
Q 010426 346 LQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSL 425 (511)
Q Consensus 346 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 425 (511)
.+.++++++ .++.++. ..+++|++|++ +.+.++.+.+..+..+++|++|++++ +. +..++...+ ..+++|
T Consensus 9 ~~~l~~~~~-~l~~~p~-~~~~~l~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~--n~-l~~~~~~~~--~~l~~L 78 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPT-GIPSSATRLEL---ESNKLQSLPHGVFDKLTQLTKLSLSQ--NQ-IQSLPDGVF--DKLTKL 78 (177)
T ss_dssp TTEEECCSS-CCSSCCT-TCCTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECCS--SC-CCCCCTTTT--TTCTTC
T ss_pred CCEEEecCC-CCccCCC-CCCCCCcEEEe---CCCcccEeCHHHhcCcccccEEECCC--Cc-ceEeChhHc--cCCCcc
Confidence 356666666 5666653 34578888888 45556666666688999999999999 34 777775223 678999
Q ss_pred ceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCCCCC--CCcccEEEecCCc
Q 010426 426 SYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPEAGL--PSSILWLNIWSCP 482 (511)
Q Consensus 426 ~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 482 (511)
++|++++|. ++.++...+..+++|++|++++| .++.+|...+ .++|++|++.+++
T Consensus 79 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 79 TILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 999999998 99988667899999999999995 7888877433 5899999999876
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=6.7e-08 Score=94.69 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=106.1
Q ss_pred CCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CCCCCCce
Q 010426 296 NSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVE 371 (511)
Q Consensus 296 ~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~ 371 (511)
..+|+.+.+.. .++.+....|. ++|+.+.+..+ ++.+......-.+|+.+.+..+ ++.++.. ..+++|+.
T Consensus 202 ~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 202 YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAE 275 (401)
T ss_dssp TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCE
T ss_pred ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCE
Confidence 34566666543 25555554443 46666666653 4444433322256777777433 4444333 34567777
Q ss_pred EEEEeccc--ccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCC
Q 010426 372 LEIRRVDV--KMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTS 449 (511)
Q Consensus 372 L~l~~~~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~ 449 (511)
+++.++.. .....+....|.++++|+.+.+.+ . ++.++...+ ..+++|+++++.+ +++.+....|.++ +
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~---i~~I~~~aF--~~c~~L~~l~lp~--~l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S---IRILGQGLL--GGNRKVTQLTIPA--NVTQINFSAFNNT-G 346 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T---CCEECTTTT--TTCCSCCEEEECT--TCCEECTTSSSSS-C
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c---eEEEhhhhh--cCCCCccEEEECc--cccEEcHHhCCCC-C
Confidence 77742111 112245556788899999998876 2 677776344 6788999999965 3888887889999 9
Q ss_pred cCEEeEecCCCCcccCCC---CCCCcccEEEecC
Q 010426 450 LEFLWIDDCPNLTSFPEA---GLPSSILWLNIWS 480 (511)
Q Consensus 450 L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~ 480 (511)
|+.+++.++ .+..++.. +++.+++.|.+-.
T Consensus 347 L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 347 IKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 999999984 55555553 3446788888876
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.98 E-value=1.1e-07 Score=93.23 Aligned_cols=123 Identities=19% Similarity=0.067 Sum_probs=70.6
Q ss_pred CCcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEE
Q 010426 320 SSLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRL 399 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L 399 (511)
..++.+.+..+ ........+..++.++.+..... .+... ....+.+|+.+.+. +.++.+....|.++++|+.+
T Consensus 253 ~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~-~i~~~-~F~~~~~L~~i~l~----~~i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 253 TDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV-IVPEK-TFYGCSSLTEVKLL----DSVKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp SSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS-EECTT-TTTTCTTCCEEEEC----TTCCEECTTTTTTCTTCCEE
T ss_pred ccceeEEcCCC-cceeeccccccccccceeccCce-eeccc-cccccccccccccc----cccceechhhhcCCCCCCEE
Confidence 35555555544 11112234556666666665543 11111 11234567777663 23555555567777777777
Q ss_pred EEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEec
Q 010426 400 WIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDD 457 (511)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 457 (511)
++.+ . ++.++...+ ..+++|+++++..+ ++.+....|.++++|+++++..
T Consensus 326 ~lp~-~---v~~I~~~aF--~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 326 DLPY-L---VEEIGKRSF--RGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCCT-T---CCEECTTTT--TTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred EeCC-c---ccEEhHHhc--cCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 7754 2 556654333 56777777777642 6777667777777888777764
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=3.9e-10 Score=115.75 Aligned_cols=82 Identities=23% Similarity=0.226 Sum_probs=72.3
Q ss_pred eccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCcee
Q 010426 6 HLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFI 85 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~ 85 (511)
.|++|++++|.|+.+|. |+.+++|++|+|++| .+..+|..++.+++|+.|++++|. ++.+| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCC
Confidence 47899999999999987 999999999999999 777899889999999999999998 88887 899999999999887
Q ss_pred eecCCC
Q 010426 86 VGTDTK 91 (511)
Q Consensus 86 ~~~~~~ 91 (511)
+.+...
T Consensus 518 N~l~~~ 523 (567)
T 1dce_A 518 NRLQQS 523 (567)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 766544
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=3.3e-10 Score=120.00 Aligned_cols=99 Identities=24% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
..++.|+.|+|++|.|..+|..+..+++|++|+|++| .+..+|..++.+++|++|+|++|. +..+|..++.|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEE
Confidence 4566777777777777777766667777777777777 555777777777777777777777 66777777777777777
Q ss_pred CceeeecCCCccCcccccccc
Q 010426 82 SNFIVGTDTKSSGLKDLKSLA 102 (511)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~L~ 102 (511)
+++++.+...|..+..+.+|.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQ 319 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCC
T ss_pred ECCCCCCCccChhhhcCCCcc
Confidence 776666554433343333333
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=1.4e-11 Score=108.91 Aligned_cols=69 Identities=22% Similarity=0.143 Sum_probs=50.9
Q ss_pred cccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccCCceeeec
Q 010426 17 IRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQALSNFIVGT 88 (511)
Q Consensus 17 i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~~~~~~~ 88 (511)
+..+|..++.+++|++|++++| .+..+| .+..+++|++|++++|. +..+|..++.+++|+.|+++++.+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEEC
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcC
Confidence 3344447788888888888888 666677 67888888888888887 777776666777777777666654
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=2.3e-07 Score=90.95 Aligned_cols=231 Identities=11% Similarity=0.087 Sum_probs=139.9
Q ss_pred CccEEEEecCCCCCCCC--CCCCCCCccEEEecCCccceEeccCCCCCCCCCCCCeEEcCCCCCchhhhhhccccccccC
Q 010426 196 KMEVLGLENCENCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEHCSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGF 273 (511)
Q Consensus 196 ~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 273 (511)
+|+.+.+..+ +..++ .+.. .+|+.+.+.+ .+..++ ...+..+++|+.+++.... +..+. ...+ .+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~--~~aF~~c~~L~~l~l~~n~-l~~I~----~~aF-~~ 202 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLK--EDIFYYCYNLKKADLSKTK-ITKLP----ASTF-VY 202 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEEC--SSTTTTCTTCCEEECTTSC-CSEEC----TTTT-TT
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEeh--HHHhhCcccCCeeecCCCc-ceEec----hhhE-ee
Confidence 4666665543 33333 2333 2466666643 233332 2334445666666665321 11111 0011 24
Q ss_pred CCcCeeeeccCCCcC--cCCCCCCCCCCCEEEEEccCCcceecccCCC-CCcCeEeeccCcccccc-cccccCCCCcCeE
Q 010426 274 SSLRELSILNCSKFS--GILPLCKNSQLESLCIRYCDSLTFIARRKLP-SSLKWLEIENCEKLESL-PNDMHELNYLQHL 349 (511)
Q Consensus 274 ~~L~~L~l~~c~~l~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L 349 (511)
.+|+.+.+... ++ +.-....+++|+.+++.. .++.++...|. .+|+.+.+.++ ++.+ ...|.+|++|+.+
T Consensus 203 ~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 203 AGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEV 276 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEE
T ss_pred cccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEE
Confidence 56666666532 22 112223566777777765 35666655554 67888888543 4555 4567889999999
Q ss_pred EecCCCCC----cccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCC
Q 010426 350 CINRCPSI----VRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPT 423 (511)
Q Consensus 350 ~l~~~~~l----~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 423 (511)
.+.++... +.++.. ..+++|+.+.+ . +.++.+....|.++++|+.+.+.. + ++.++...+ ..+
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l---~-~~i~~I~~~aF~~c~~L~~l~lp~-~---l~~I~~~aF--~~~- 345 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEI---P-ESIRILGQGLLGGNRKVTQLTIPA-N---VTQINFSAF--NNT- 345 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECC---C-TTCCEECTTTTTTCCSCCEEEECT-T---CCEECTTSS--SSS-
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEe---C-CceEEEhhhhhcCCCCccEEEECc-c---ccEEcHHhC--CCC-
Confidence 99877321 123332 45678999988 4 357777777899999999999966 2 667765333 566
Q ss_pred ccceEeecCCcCCcccCccccCCCC-CcCEEeEec
Q 010426 424 SLSYLNIIGFRNLKMLSSKGFQSLT-SLEFLWIDD 457 (511)
Q Consensus 424 ~L~~L~l~~~~~l~~l~~~~~~~l~-~L~~L~l~~ 457 (511)
+|+++++.++. +..++...+..++ .++.|++..
T Consensus 346 ~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 346 GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECG
T ss_pred CCCEEEEcCCC-CcccccccccCCCCCccEEEeCH
Confidence 99999999987 7777767788885 678888865
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=1.2e-09 Score=94.11 Aligned_cols=81 Identities=28% Similarity=0.389 Sum_probs=40.6
Q ss_pred eccEeecCCCccccC-CccccccccccEEeccCcccccccccc-ccCcCccceEEecCcccccccCCc-ccCcCCCccCC
Q 010426 6 HLRYLNLSDTRIRNL-PKPTCSLINLQVLLLRDCYYLLKLPSK-LRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALS 82 (511)
Q Consensus 6 ~Lr~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~ 82 (511)
+|++|+|++|+|..+ |..|+.+++|++|+|++| .+..+|.. +.++++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 455555555555544 234555555555555555 44444432 3455555555555555 4444443 45555555555
Q ss_pred ceeeec
Q 010426 83 NFIVGT 88 (511)
Q Consensus 83 ~~~~~~ 88 (511)
+.++.+
T Consensus 112 L~~N~~ 117 (174)
T 2r9u_A 112 LYNNPW 117 (174)
T ss_dssp CCSSCB
T ss_pred eCCCCc
Confidence 544444
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=1.4e-11 Score=108.78 Aligned_cols=85 Identities=24% Similarity=0.201 Sum_probs=76.2
Q ss_pred CCceeccEeecCCCccccCCccccccccccEEeccCccccccccccccCcCccceEEecCcccccccCCcccCcCCCccC
Q 010426 2 SGWKHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQAL 81 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 81 (511)
+++++|++|++++|.|..+| .+..+++|++|++++| .+..+|..+..+++|++|++++|. +..+| .++.+++|++|
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCEE
Confidence 35789999999999999998 8999999999999999 777899878888999999999998 88876 68899999999
Q ss_pred CceeeecCC
Q 010426 82 SNFIVGTDT 90 (511)
Q Consensus 82 ~~~~~~~~~ 90 (511)
+++++.+..
T Consensus 121 ~l~~N~i~~ 129 (198)
T 1ds9_A 121 YMSNNKITN 129 (198)
T ss_dssp EESEEECCC
T ss_pred ECCCCcCCc
Confidence 998887754
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.87 E-value=1.4e-09 Score=115.27 Aligned_cols=82 Identities=10% Similarity=-0.068 Sum_probs=24.9
Q ss_pred eeccEeecCCCccccCCccccccccccEEeccC-----ccccccccccccCcCccceEEecCcccccccCCcccCcCCCc
Q 010426 5 KHLRYLNLSDTRIRNLPKPTCSLINLQVLLLRD-----CYYLLKLPSKLRNLINLRHLDIMGAYLIKEIPFGMKELKNLQ 79 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~-----n~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 79 (511)
++++.|+|.+|.+...+..+-...+|+.+.+.. | .+...|+.+..+++|+.|+|++|. +..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n-~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN-RMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccc-ceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCC
Confidence 345666666666665554433333333333322 2 233334556666677777777766 666666666666677
Q ss_pred cCCceeeec
Q 010426 80 ALSNFIVGT 88 (511)
Q Consensus 80 ~L~~~~~~~ 88 (511)
+|+++++.+
T Consensus 251 ~L~Ls~N~l 259 (727)
T 4b8c_D 251 RLYLNGNSL 259 (727)
T ss_dssp CCBCTTSCC
T ss_pred EEEeeCCcC
Confidence 666655544
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=6.2e-09 Score=89.20 Aligned_cols=92 Identities=26% Similarity=0.323 Sum_probs=52.4
Q ss_pred ccEeecCCCccccCCccccccccccEEeccCccccccc-cccccCcCccceEEecCcccccccCCc-ccCcCCCccCCce
Q 010426 7 LRYLNLSDTRIRNLPKPTCSLINLQVLLLRDCYYLLKL-PSKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALSNF 84 (511)
Q Consensus 7 Lr~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~~ 84 (511)
.+.+++++|.+..+|..+. ++|++|+|++| .+..+ |..++.+++|++|++++|. +..+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 4566666666666665443 56666666666 44444 3445666666666666666 5555554 4566666666666
Q ss_pred eeecCCCcc-Ccccccccc
Q 010426 85 IVGTDTKSS-GLKDLKSLA 102 (511)
Q Consensus 85 ~~~~~~~~~-~~~~l~~L~ 102 (511)
++.+...+. .+..+..|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCC
T ss_pred CCccCEeCHHHhcCCCCCC
Confidence 665554422 234444444
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=1.9e-08 Score=86.18 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=64.2
Q ss_pred CeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccc
Q 010426 347 QHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLS 426 (511)
Q Consensus 347 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 426 (511)
++++++++ .++.+|.. .+++|+.|++ +.+.++.+.+..+.++++|++|++++ +. +..++...+ ..+++|+
T Consensus 12 ~~l~~s~n-~l~~ip~~-~~~~l~~L~L---~~N~i~~~~~~~~~~l~~L~~L~Ls~--N~-l~~l~~~~f--~~l~~L~ 81 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTG-IPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDN--NQ-LTVLPAGVF--DKLTQLT 81 (170)
T ss_dssp TEEECTTS-CCSSCCSC-CCTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECCS--SC-CCCCCTTTT--TTCTTCC
T ss_pred CEEEeCCC-CcCccCcc-CCCCCcEEEc---CCCcCCccChhhhcCcccCCEEECCC--CC-cCccChhhc--cCCCCCC
Confidence 45555555 45554432 3456666666 45555555555667777777777777 33 666665122 4567777
Q ss_pred eEeecCCcCCcccCccccCCCCCcCEEeEecC
Q 010426 427 YLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDC 458 (511)
Q Consensus 427 ~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 458 (511)
+|++++|. ++.++...+..+++|+.|+|+++
T Consensus 82 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 82 QLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 77777776 77776556777777888877774
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=2.4e-08 Score=85.76 Aligned_cols=102 Identities=18% Similarity=0.292 Sum_probs=67.5
Q ss_pred CeEEecCCCCCcccCCCCCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccc
Q 010426 347 QHLCINRCPSIVRFPEEGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLS 426 (511)
Q Consensus 347 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 426 (511)
+.++++++ .++.+|.. .+++|+.|++ +.+.++.+.+..+.++++|++|++++ +. +..++...+ ..+++|+
T Consensus 15 ~~l~~~~n-~l~~iP~~-~~~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~Ls~--N~-l~~i~~~~~--~~l~~L~ 84 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAG-IPTDKQRLWL---NNNQITKLEPGVFDHLVNLQQLYFNS--NK-LTAIPTGVF--DKLTQLT 84 (174)
T ss_dssp SEEECCSS-CCSSCCSC-CCTTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECCS--SC-CCCCCTTTT--TTCTTCC
T ss_pred cEEEeCCC-CCCccCCC-cCCCCcEEEe---CCCCccccCHHHhcCCcCCCEEECCC--CC-CCccChhHh--CCcchhh
Confidence 45555555 45555542 3466777777 45556665555677777888888887 34 677765122 4577888
Q ss_pred eEeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 427 YLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 427 ~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
+|++++|. ++.++...+..+++|+.|++++++
T Consensus 85 ~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 85 QLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 88888877 777775557788888888888753
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.68 E-value=1.3e-08 Score=86.06 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=57.8
Q ss_pred CCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCccccccc---CCCccceEeecCCcCCcccCcccc
Q 010426 368 NLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMM---LPTSLSYLNIIGFRNLKMLSSKGF 444 (511)
Q Consensus 368 ~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~ 444 (511)
.|++|+++ +|. +++.....+.++++|+.|++++ |.. +++..- ..+.. .+++|++|+|++|+++++-....+
T Consensus 62 ~L~~LDLs--~~~-Itd~GL~~L~~~~~L~~L~L~~-C~~-ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 62 KIQAIDAT--DSC-IMSIGFDHMEGLQYVEKIRLCK-CHY-IEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CEEEEEEE--SCC-CCGGGGGGGTTCSCCCEEEEES-CTT-CCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred eEeEEeCc--CCC-ccHHHHHHhcCCCCCCEEEeCC-CCc-cCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 56677776 554 5555444566777777777777 544 444332 11111 134688888888877776544556
Q ss_pred CCCCCcCEEeEecCCCCcc
Q 010426 445 QSLTSLEFLWIDDCPNLTS 463 (511)
Q Consensus 445 ~~l~~L~~L~l~~c~~l~~ 463 (511)
..+++|++|+|++|+++++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 6788888888888888875
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=5.3e-08 Score=93.92 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=34.4
Q ss_pred ecCCC-ccccCCccccccccccEEeccC-cccccccc-ccccCcCccceEEecCcccccccCCc-ccCcCCCccCCceee
Q 010426 11 NLSDT-RIRNLPKPTCSLINLQVLLLRD-CYYLLKLP-SKLRNLINLRHLDIMGAYLIKEIPFG-MKELKNLQALSNFIV 86 (511)
Q Consensus 11 ~L~~n-~i~~l~~~~~~l~~L~~L~L~~-n~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~~~~~ 86 (511)
+.+++ .+..+|. +..+++|++|+|++ | .+..+| ..|+.+++|++|+|++|. +..+++. |+.|++|+.|+++++
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 44444 4444444 44444455555543 3 333333 234444555555555444 4333332 444445555444444
Q ss_pred ecC
Q 010426 87 GTD 89 (511)
Q Consensus 87 ~~~ 89 (511)
.+.
T Consensus 91 ~l~ 93 (347)
T 2ifg_A 91 ALE 93 (347)
T ss_dssp CCS
T ss_pred ccc
Confidence 443
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.54 E-value=8.4e-06 Score=79.85 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=54.5
Q ss_pred cccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCccc
Q 010426 339 DMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEE 416 (511)
Q Consensus 339 ~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 416 (511)
.+..++.|+.+.+... +..++.. ..+++|+.+.+. +.++.+....|.++.+|+.+.+.+ . ++.++...
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~----~~i~~I~~~aF~~c~~L~~i~lp~-~---v~~I~~~a 329 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS----SRITELPESVFAGCISLKSIDIPE-G---ITQILDDA 329 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC----TTCCEECTTTTTTCTTCCEEECCT-T---CCEECTTT
T ss_pred eeeecccccEEecccc--cceecCcccccccccccccCC----CcccccCceeecCCCCcCEEEeCC-c---ccEehHhH
Confidence 3445555555555433 1222221 233455555541 234444444566666666666654 1 45555423
Q ss_pred ccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEec
Q 010426 417 MGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDD 457 (511)
Q Consensus 417 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 457 (511)
+ ..+.+|+++.+.. +++.+....|.++++|+.+++.+
T Consensus 330 F--~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 330 F--AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp T--TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred h--hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 3 5566666666643 25666556666666777666655
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.38 E-value=4e-05 Score=74.99 Aligned_cols=283 Identities=11% Similarity=0.122 Sum_probs=152.7
Q ss_pred CCCCCC-CCceEEEecCCCccCCcccCCCCCCCccEEEEecCC--CCCCCC--CCCCCCCccEEEecCCccceEeccCCC
Q 010426 165 KLKPCT-SIKKLTIKGYGGKKIPSWIADPSFSKMEVLGLENCE--NCTSLP--SFGLLSSLKHLTVKGLRKLKSMGYGEH 239 (511)
Q Consensus 165 ~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~ 239 (511)
.|..++ .|+.+.+... +..+....+. .|++|+.+.+..+. .+..+. .+..+.+|+.+.+.. .+..+ +..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~-~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I--~~~ 131 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFY-NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEI--DSE 131 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTT-TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEE--CTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhh-CCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--cccee--hhh
Confidence 455553 4777777543 3334333322 57788888877652 233333 455666666665543 23332 223
Q ss_pred CCCCCCCCCeEEcCCCCCchhhhhhccccccccCCCcCeeeeccCCCcCcCCC--CCCCCCCCEEEEEccCCcceecccC
Q 010426 240 CSNPFQSLETLWFEDLPEWEYWDTKFEENGVAGFSSLRELSILNCSKFSGILP--LCKNSQLESLCIRYCDSLTFIARRK 317 (511)
Q Consensus 240 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~ 317 (511)
.+..+.+|+.+.+... +..+ ....+..+.+|+.+.+.+. ++ .+. .....+|+.+.+-. .++.+....
T Consensus 132 aF~~c~~L~~i~lp~~--~~~I----~~~~F~~c~~L~~i~~~~~--~~-~I~~~aF~~~~l~~i~ip~--~~~~i~~~a 200 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG--VTSV----ADGMFSYCYSLHTVTLPDS--VT-AIEERAFTGTALTQIHIPA--KVTRIGTNA 200 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEE----CTTTTTTCTTCCEEECCTT--CC-EECTTTTTTCCCSEEEECT--TCCEECTTT
T ss_pred hhhhhcccccccccce--eeee----cccceecccccccccccce--ee-EeccccccccceeEEEECC--cccccccch
Confidence 4445666777666431 1111 1122445666766666542 11 111 11234566666644 233333332
Q ss_pred CC--CCcCeEeeccCcccccccc--------------cccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEeccc
Q 010426 318 LP--SSLKWLEIENCEKLESLPN--------------DMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDV 379 (511)
Q Consensus 318 ~~--~~L~~L~l~~~~~l~~l~~--------------~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~ 379 (511)
+. .+++........ ...+.. .......+..+.+.. .++.+... ..+..|+.+.+.
T Consensus 201 f~~c~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp---- 273 (394)
T 4gt6_A 201 FSECFALSTITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMP---- 273 (394)
T ss_dssp TTTCTTCCEEEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECC----
T ss_pred hhhccccceecccccc-cccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEecc----
Confidence 22 334444333221 111100 011112223333221 12222222 345677777773
Q ss_pred ccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCC
Q 010426 380 KMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCP 459 (511)
Q Consensus 380 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 459 (511)
..+..+....+.+++.|+.+.+.. . ++.++...+ ..+++|+++++.. +++.+....|.++.+|+++.|..
T Consensus 274 ~~~~~I~~~aF~~c~~L~~i~l~~-~---i~~I~~~aF--~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~-- 343 (394)
T 4gt6_A 274 DSVVSIGTGAFMNCPALQDIEFSS-R---ITELPESVF--AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS-- 343 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCT-T---CCEECTTTT--TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--
T ss_pred cccceecCcccccccccccccCCC-c---ccccCceee--cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--
Confidence 223345555688899999998865 2 677776344 7789999999975 38888878999999999999964
Q ss_pred CCcccCCCCC--CCcccEEEecCC
Q 010426 460 NLTSFPEAGL--PSSILWLNIWSC 481 (511)
Q Consensus 460 ~l~~~~~~~~--~~~L~~L~l~~c 481 (511)
.++.++...+ .++|+.+++.+.
T Consensus 344 sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 344 SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred ccCEEhHhHhhCCCCCCEEEECCc
Confidence 5777766444 368999999874
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=2.4e-07 Score=78.32 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=43.2
Q ss_pred CcCeEeeccCcccccccccccCCCCcCeEEecCCCCCcccCCC--CC----CCCCceEEEEecccccccchhhhhhccCC
Q 010426 321 SLKWLEIENCEKLESLPNDMHELNYLQHLCINRCPSIVRFPEE--GF----PTNLVELEIRRVDVKMYKAIIHWGLHRLT 394 (511)
Q Consensus 321 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~----~~~L~~L~l~~~~~~~l~~~~~~~~~~l~ 394 (511)
.|+.|++++|.....--..+..+++|++|++++|..+++.... .. .++|++|+++ +|..+++.....+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls--~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII--SCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE--SCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC--CCCcCCHHHHHHHhcCC
Confidence 4555555555321111223355666666666666656553221 11 1346666666 66666655444455556
Q ss_pred cccEEEEecCCCC
Q 010426 395 SLRRLWIEGCDDD 407 (511)
Q Consensus 395 ~L~~L~l~~~~~~ 407 (511)
+|++|++++ |+.
T Consensus 140 ~L~~L~L~~-c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSD-LPG 151 (176)
T ss_dssp TCCEEEEES-CTT
T ss_pred CCCEEECCC-CCC
Confidence 666666666 443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.36 E-value=1.1e-06 Score=84.68 Aligned_cols=102 Identities=19% Similarity=0.071 Sum_probs=78.3
Q ss_pred eEeeccCcccccccccccCCCCcCeEEecC-CCCCcccCC--CCCCCCCceEEEEecccccccchhhhhhccCCcccEEE
Q 010426 324 WLEIENCEKLESLPNDMHELNYLQHLCINR-CPSIVRFPE--EGFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSLRRLW 400 (511)
Q Consensus 324 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~-~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~ 400 (511)
.++.+++..++.+|. +..+++|++|++++ | .++.++. ...+++|+.|+| +.|.++.+.+..|.++++|+.|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l---~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTI---VKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEEC---CSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEEC---CCCccceeCHHHhcCCcCCCEEe
Confidence 456666657888888 88899999999996 6 7777764 356789999999 56678888877888999999999
Q ss_pred EecCCCCCccccCcccccccCCCccceEeecCCcCCc
Q 010426 401 IEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLK 437 (511)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 437 (511)
|++ +. +..+|. ..+ ..++ |+.|++.+|+ ++
T Consensus 87 l~~--N~-l~~~~~-~~~-~~~~-L~~l~l~~N~-~~ 116 (347)
T 2ifg_A 87 LSF--NA-LESLSW-KTV-QGLS-LQELVLSGNP-LH 116 (347)
T ss_dssp CCS--SC-CSCCCS-TTT-CSCC-CCEEECCSSC-CC
T ss_pred CCC--Cc-cceeCH-HHc-ccCC-ceEEEeeCCC-cc
Confidence 998 44 778876 331 2333 8999999887 65
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=3.1e-08 Score=96.14 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=27.8
Q ss_pred eeccEeecCCCccccCC-ccccc-----cccccEEeccCcccccc-ccccc-cCcCccceEEecCcc
Q 010426 5 KHLRYLNLSDTRIRNLP-KPTCS-----LINLQVLLLRDCYYLLK-LPSKL-RNLINLRHLDIMGAY 63 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~~l~-~~~~~-----l~~L~~L~L~~n~~~~~-l~~~~-~~l~~L~~L~l~~~~ 63 (511)
+.|+.|+|++|.|+... ..+.. .++|++|+|++| .+.. -...+ ..+++|+.|++++|.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 34566666666665321 12221 246666666666 2321 11112 234556666666665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.17 E-value=4.1e-06 Score=80.49 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=8.1
Q ss_pred CCCCCCEEEEEc
Q 010426 295 KNSQLESLCIRY 306 (511)
Q Consensus 295 ~~~~L~~L~l~~ 306 (511)
.+++|+.|.+..
T Consensus 137 ~l~~L~~L~l~~ 148 (362)
T 2ra8_A 137 KFAHFEGLFWGD 148 (362)
T ss_dssp HHTTCSEEEECC
T ss_pred hcchhhheeecC
Confidence 356788887754
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=8.4e-08 Score=93.04 Aligned_cols=159 Identities=16% Similarity=0.016 Sum_probs=100.5
Q ss_pred CCCCCCEEEEEccCCcceeccc-------CCCCCcCeEeeccCccccc-ccccccCCCCcCeEEecCCCCCcccCCC---
Q 010426 295 KNSQLESLCIRYCDSLTFIARR-------KLPSSLKWLEIENCEKLES-LPNDMHELNYLQHLCINRCPSIVRFPEE--- 363 (511)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~~~~~-------~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~--- 363 (511)
..++|+.|++++|. ++..... ..+.+|++|++++|..-.. +......+++|++|++++| .+++.+..
T Consensus 70 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 70 VLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 34679999999965 4332211 1125899999999943221 1222345678999999999 56543221
Q ss_pred ----CCCCCCceEEEEecccccccchhh----hhhccCCcccEEEEecCCCCCccccCc--ccccccCCCccceEeecCC
Q 010426 364 ----GFPTNLVELEIRRVDVKMYKAIIH----WGLHRLTSLRRLWIEGCDDDEAECFPD--EEMGMMLPTSLSYLNIIGF 433 (511)
Q Consensus 364 ----~~~~~L~~L~l~~~~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 433 (511)
...++|++|+++ .+.+++... ..+...++|++|++++ |. ++.... +.......++|++|++++|
T Consensus 148 ~~L~~~~~~L~~L~Ls---~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~--l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 148 DLLLHDQCQITTLRLS---NNPLTAAGVAVLMEGLAGNTSVTHLSLLH-TG--LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHSTTCCCCEEECC---SSCCHHHHHHHHHHHHHTCSSCCEEECTT-SS--CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHhcCCccceeeCC---CCCCChHHHHHHHHHHhcCCCcCEEeCCC-CC--CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 235789999995 445654322 2346788999999999 33 544321 0001134678999999999
Q ss_pred cCCcccCc----cccCCCCCcCEEeEecCCCCcc
Q 010426 434 RNLKMLSS----KGFQSLTSLEFLWIDDCPNLTS 463 (511)
Q Consensus 434 ~~l~~l~~----~~~~~l~~L~~L~l~~c~~l~~ 463 (511)
. ++.... ..+...+.|++|+|++| .++.
T Consensus 222 ~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 222 G-AGDTAALALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp C-CCHHHHHHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred C-CCHHHHHHHHHHHHhCCCCCEEeccCC-CCCH
Confidence 8 775321 34456789999999996 4654
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.13 E-value=0.00044 Score=67.09 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=80.1
Q ss_pred CCcCeEeeccCcccccc-cccccCCCCcCeEEecCCCCCcccCCC--CCCCCCceEEEEecccccccchhhhhhccCCcc
Q 010426 320 SSLKWLEIENCEKLESL-PNDMHELNYLQHLCINRCPSIVRFPEE--GFPTNLVELEIRRVDVKMYKAIIHWGLHRLTSL 396 (511)
Q Consensus 320 ~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~~l~~L 396 (511)
.+++.+.+... ++.+ ...+..+..|+.+.+..+ ++.++.. ..+.+|+.+.+. ..++.+....|.++++|
T Consensus 217 ~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~----~~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 217 KNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFY----AKVKTVPYLLCSGCSNL 288 (379)
T ss_dssp SSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEEC----CCCSEECTTTTTTCTTC
T ss_pred cccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccc----ccceecccccccccccc
Confidence 45666666443 2233 234567777777777654 4444433 345677777773 23555555567778888
Q ss_pred cEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCCCcccCC
Q 010426 397 RRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPNLTSFPE 466 (511)
Q Consensus 397 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~ 466 (511)
+.+.+.+ .. ++.++...+ ..+++|+++++.. +++.|....|.++++|+++.+.. .++.+..
T Consensus 289 ~~i~l~~--~~-i~~I~~~aF--~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 289 TKVVMDN--SA-IETLEPRVF--MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp CEEEECC--TT-CCEECTTTT--TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred ccccccc--cc-cceehhhhh--cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence 8888776 33 666665333 6677788888753 27777767778888888777743 3555543
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.01 E-value=0.00068 Score=65.76 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=98.5
Q ss_pred CCCCCCEEEEEccCCcceecccCCC--CCcCeEeeccCccccccc-ccccCCCCcCeEEecCCCCCcccCCC--CCCCCC
Q 010426 295 KNSQLESLCIRYCDSLTFIARRKLP--SSLKWLEIENCEKLESLP-NDMHELNYLQHLCINRCPSIVRFPEE--GFPTNL 369 (511)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L 369 (511)
.+.+++.+.+.. .+..+....+. ..|+.+.+..+ ++.+. ..+..+.+|+.+.+... ++.++.. ..+++|
T Consensus 215 ~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 215 YGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred cccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceecccccccccccc
Confidence 566777777654 35555554443 67888888765 44443 46678999999999754 5555443 456899
Q ss_pred ceEEEEecccccccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecCCcCCcccCccccCCCCC
Q 010426 370 VELEIRRVDVKMYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTS 449 (511)
Q Consensus 370 ~~L~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~ 449 (511)
+.+.+ ..+.++.+....|.++.+|+.+.+.. . ++.++...+ ..+++|+++.+.. +++.+....|.+++.
T Consensus 289 ~~i~l---~~~~i~~I~~~aF~~c~~L~~i~lp~-~---l~~I~~~aF--~~C~~L~~i~ip~--~v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 289 TKVVM---DNSAIETLEPRVFMDCVKLSSVTLPT-A---LKTIQVYAF--KNCKALSTISYPK--SITLIESGAFEGSSI 357 (379)
T ss_dssp CEEEE---CCTTCCEECTTTTTTCTTCCEEECCT-T---CCEECTTTT--TTCTTCCCCCCCT--TCCEECTTTTTTSSC
T ss_pred ccccc---cccccceehhhhhcCCCCCCEEEcCc-c---ccEEHHHHh--hCCCCCCEEEECC--ccCEEchhHhhCCCC
Confidence 99999 55567777777899999999999976 2 777776344 7789999999864 378887677776643
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=3.8e-05 Score=73.77 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=17.0
Q ss_pred CCccceEeecCCcCCcc-----cCccccCCCCCcCEEeEecC
Q 010426 422 PTSLSYLNIIGFRNLKM-----LSSKGFQSLTSLEFLWIDDC 458 (511)
Q Consensus 422 ~~~L~~L~l~~~~~l~~-----l~~~~~~~l~~L~~L~l~~c 458 (511)
+|+|++|+++.|. ++. +. .++..+++|+.|+|++|
T Consensus 278 ~~~L~~LdLs~n~-L~d~G~~~L~-~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISAGV-LTDEGARLLL-DHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCSSC-CBHHHHHHHH-TTHHHHTTCSEEECCSB
T ss_pred CCCCCEEECCCCC-CChHHHHHHH-hhcccCCcceEEECCCC
Confidence 3455555555544 443 11 22334555666666554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=6.7e-06 Score=74.93 Aligned_cols=78 Identities=24% Similarity=0.192 Sum_probs=49.4
Q ss_pred CceeccEeecCCCccccCC---ccccccccccEEeccCccccccccccccCcC--ccceEEecCcccccccCC-------
Q 010426 3 GWKHLRYLNLSDTRIRNLP---KPTCSLINLQVLLLRDCYYLLKLPSKLRNLI--NLRHLDIMGAYLIKEIPF------- 70 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~l~---~~~~~l~~L~~L~L~~n~~~~~l~~~~~~l~--~L~~L~l~~~~~l~~l~~------- 70 (511)
++++|+.|+|++|.|+.++ ..+..+++|++|+|++| .+..+. .+..++ +|++|++++|..-...|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3567788888888776543 44567778888888877 555442 244444 778888887772233331
Q ss_pred cccCcCCCccCC
Q 010426 71 GMKELKNLQALS 82 (511)
Q Consensus 71 ~l~~l~~L~~L~ 82 (511)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 255677777776
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=5.4e-06 Score=71.72 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=58.3
Q ss_pred CCceeccEeecCCC-ccc-----cCCccccccccccEEeccCcccccc-----ccccccCcCccceEEecCcccccc---
Q 010426 2 SGWKHLRYLNLSDT-RIR-----NLPKPTCSLINLQVLLLRDCYYLLK-----LPSKLRNLINLRHLDIMGAYLIKE--- 67 (511)
Q Consensus 2 ~~l~~Lr~L~L~~n-~i~-----~l~~~~~~l~~L~~L~L~~n~~~~~-----l~~~~~~l~~L~~L~l~~~~~l~~--- 67 (511)
...+.|++|+|++| .|. .+.+.+...++|++|+|++| .+.. +...+...+.|++|++++|. +..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 35678889999988 775 24455667788999999998 4432 33445566789999999887 543
Q ss_pred --cCCcccCcCCCccCCc--eeeec
Q 010426 68 --IPFGMKELKNLQALSN--FIVGT 88 (511)
Q Consensus 68 --l~~~l~~l~~L~~L~~--~~~~~ 88 (511)
+...+...++|++|++ ..+.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCC
Confidence 3344666677888876 44443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.36 E-value=2e-05 Score=71.78 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=50.0
Q ss_pred eecCCCccccCCcc----ccccccccEEeccCccccccc---cccccCcCccceEEecCcccccccCCcccCcC--CCcc
Q 010426 10 LNLSDTRIRNLPKP----TCSLINLQVLLLRDCYYLLKL---PSKLRNLINLRHLDIMGAYLIKEIPFGMKELK--NLQA 80 (511)
Q Consensus 10 L~L~~n~i~~l~~~----~~~l~~L~~L~L~~n~~~~~l---~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~--~L~~ 80 (511)
++++.|....++.. ...+++|+.|+|++| .+..+ |..+..+++|+.|+|++|. +..+ .++..++ +|++
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcce
Confidence 55566644433321 245789999999999 55544 4556789999999999998 6665 3344444 7777
Q ss_pred CCceeeec
Q 010426 81 LSNFIVGT 88 (511)
Q Consensus 81 L~~~~~~~ 88 (511)
|++.++.+
T Consensus 225 L~L~~Npl 232 (267)
T 3rw6_A 225 LWLDGNSL 232 (267)
T ss_dssp EECTTSTT
T ss_pred EEccCCcC
Confidence 77665544
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.09 E-value=5.9e-05 Score=65.10 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=63.0
Q ss_pred CceeccEeecCCCcccc-----CCccccccccccEEeccCcccccc-----ccccccCcCccceEEe--cCcccccc---
Q 010426 3 GWKHLRYLNLSDTRIRN-----LPKPTCSLINLQVLLLRDCYYLLK-----LPSKLRNLINLRHLDI--MGAYLIKE--- 67 (511)
Q Consensus 3 ~l~~Lr~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~n~~~~~-----l~~~~~~l~~L~~L~l--~~~~~l~~--- 67 (511)
..++|++|+|++|.|.. +.+.+...+.|++|+|++| .+.. +...+...+.|++|++ ++|. +..
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~ 140 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVE 140 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHH
Confidence 45789999999999963 4455667789999999999 5543 4555778889999999 7787 543
Q ss_pred --cCCcccCcCCCccCCceeeec
Q 010426 68 --IPFGMKELKNLQALSNFIVGT 88 (511)
Q Consensus 68 --l~~~l~~l~~L~~L~~~~~~~ 88 (511)
+...+...++|++|+++.+.+
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCcCEEeccCCCC
Confidence 223455668899988766654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.26 E-value=0.0053 Score=49.12 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=42.0
Q ss_pred cEeecCCCccc--cCCccccccccccEEeccCccccccccc-cccCcCccceEEecCcc
Q 010426 8 RYLNLSDTRIR--NLPKPTCSLINLQVLLLRDCYYLLKLPS-KLRNLINLRHLDIMGAY 63 (511)
Q Consensus 8 r~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~l~~-~~~~l~~L~~L~l~~~~ 63 (511)
++++.+++.++ .+|..+. ++|++|+|++| .+..+|. .|..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 46778888887 8886554 57899999998 7777874 46788889999998886
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.11 E-value=0.0066 Score=48.54 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=42.8
Q ss_pred EEEEecCCCCCcc--ccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEecCCC
Q 010426 398 RLWIEGCDDDEAE--CFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDDCPN 460 (511)
Q Consensus 398 ~L~l~~~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~ 460 (511)
.++.++ .. ++ .+|. ..+++|++|++++|. |+.++...|..+++|+.|+|.++|.
T Consensus 12 ~v~Cs~--~~-L~~~~vP~-----~lp~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR--RG-LTWASLPT-----AFPVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS--SC-CCTTTSCS-----CCCTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC--CC-CccccCCC-----CCCcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 455555 33 66 7786 557789999999988 9999877889999999999998763
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.18 E-value=0.075 Score=45.53 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=50.0
Q ss_pred ceeccEeecCCC-ccc-----cCCccccccccccEEeccCcccccc-----ccccccCcCccceEEecCcccccccC---
Q 010426 4 WKHLRYLNLSDT-RIR-----NLPKPTCSLINLQVLLLRDCYYLLK-----LPSKLRNLINLRHLDIMGAYLIKEIP--- 69 (511)
Q Consensus 4 l~~Lr~L~L~~n-~i~-----~l~~~~~~l~~L~~L~L~~n~~~~~-----l~~~~~~l~~L~~L~l~~~~~l~~l~--- 69 (511)
=+.|+.|+|+++ .|. .+.+++..-..|+.|+|++| .+.+ +...+..=+.|+.|+|++|. +....
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~a 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR 117 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHH
Confidence 357888888875 675 24555666778889999888 4432 22334455778888888887 53322
Q ss_pred --CcccCcCCCccCCce
Q 010426 70 --FGMKELKNLQALSNF 84 (511)
Q Consensus 70 --~~l~~l~~L~~L~~~ 84 (511)
..+..-+.|++|++.
T Consensus 118 la~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHTTTTCCCSEEECC
T ss_pred HHHHHhhCCceeEEECC
Confidence 234444556666654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=82.42 E-value=0.56 Score=40.07 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=43.4
Q ss_pred eeccEeecCCCccc-----cCCccccccccccEEeccCcccccc-----ccccccCcCccceEEecCcc
Q 010426 5 KHLRYLNLSDTRIR-----NLPKPTCSLINLQVLLLRDCYYLLK-----LPSKLRNLINLRHLDIMGAY 63 (511)
Q Consensus 5 ~~Lr~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~n~~~~~-----l~~~~~~l~~L~~L~l~~~~ 63 (511)
+.|+.|+|++|.|. .+.+.+..-+.|++|+|++| .+.. +-+.+..=+.|++|+++++.
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 57999999999996 34455667788999999999 4442 22335555679999998764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.85 E-value=23 Score=26.08 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=29.5
Q ss_pred ccccCcccccccCCCccceEeecCCcCCcccCccccCCCCCcCEEeEec
Q 010426 409 AECFPDEEMGMMLPTSLSYLNIIGFRNLKMLSSKGFQSLTSLEFLWIDD 457 (511)
Q Consensus 409 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 457 (511)
++.+....+ ..+.+|+++.|-. .++.|....|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF--~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLF--AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTT--TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHh--cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 444444222 5667777777764 26777667788888888888865
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.35 E-value=16 Score=26.90 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=32.3
Q ss_pred cccchhhhhhccCCcccEEEEecCCCCCccccCcccccccCCCccceEeecC
Q 010426 381 MYKAIIHWGLHRLTSLRRLWIEGCDDDEAECFPDEEMGMMLPTSLSYLNIIG 432 (511)
Q Consensus 381 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 432 (511)
.++.+....|.++.+|+.+.|-. . ++.+....+ ..+.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~---v~~Ig~~aF--~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-N---IGLLYDGMF--SGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-T---SSCCCTTSS--TTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-c---hheEcHHHH--hccCCccEEEEcC
Confidence 34555555688888888888876 3 666665344 6788888888876
Done!