BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010427
         (511 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F35|D Chain D, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
 pdb|4F35|B Chain B, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
 pdb|4F35|A Chain A, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
 pdb|4F35|C Chain C, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
          Length = 449

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 145 LLALASSANVGSSATPIGNPQNLVIALQSGISF 177
           LL +A SA++G  AT +G+P N + A + G+SF
Sbjct: 169 LLGVAYSASIGGIATLVGSPPNAIAAAEVGLSF 201


>pdb|1B9B|A Chain A, Triosephosphate Isomerase Of Thermotoga Maritima
 pdb|1B9B|B Chain B, Triosephosphate Isomerase Of Thermotoga Maritima
          Length = 255

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 208 SVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSEND 256
           ++K   ++ F ED        SP+ +  I V     G+S+RRR   E+D
Sbjct: 59  NIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDD 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,510,311
Number of Sequences: 62578
Number of extensions: 437190
Number of successful extensions: 1015
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 4
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)