Query 010427
Match_columns 511
No_of_seqs 194 out of 1632
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 00:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00136 silicon transporter; 100.0 1.3E-63 2.9E-68 532.0 47.3 477 1-509 1-477 (482)
2 KOG2639 Sodium sulfate symport 100.0 9.3E-58 2E-62 465.7 28.0 469 9-509 178-675 (685)
3 COG1055 ArsB Na+/H+ antiporter 100.0 6.2E-56 1.3E-60 461.6 41.1 387 33-508 24-420 (424)
4 PRK15445 arsenical pump membra 100.0 7.9E-53 1.7E-57 447.0 45.7 405 11-507 2-418 (427)
5 cd01118 ArsB_permease Anion pe 100.0 3.2E-51 7E-56 433.4 44.7 401 12-508 2-414 (416)
6 PLN00137 NHAD transporter fami 100.0 3.1E-49 6.7E-54 415.8 40.6 377 9-493 5-403 (424)
7 cd01117 YbiR_permease Putative 100.0 1.4E-48 3.1E-53 408.9 43.6 373 32-508 10-383 (384)
8 TIGR00935 2a45 arsenical pump 100.0 2E-48 4.4E-53 413.6 43.6 405 11-509 3-421 (429)
9 TIGR00775 NhaD Na+/H+ antiport 100.0 7.9E-49 1.7E-53 412.6 38.6 358 12-475 6-384 (420)
10 PF02040 ArsB: Arsenical pump 100.0 3.9E-48 8.3E-53 404.1 42.5 404 12-507 2-417 (423)
11 PRK09547 nhaB sodium/proton an 100.0 1.2E-47 2.7E-52 402.4 39.8 366 47-509 76-496 (513)
12 cd01116 P_permease Permease P 100.0 3.9E-45 8.4E-50 386.6 43.5 400 17-508 2-411 (413)
13 TIGR00785 dass anion transport 100.0 4.5E-42 9.7E-47 366.5 36.7 403 8-508 9-439 (444)
14 cd00625 ArsB_NhaD_permease Ani 100.0 1.7E-40 3.8E-45 348.9 41.9 386 29-508 7-395 (396)
15 cd01115 SLC13_permease Permeas 100.0 1.1E-39 2.3E-44 341.4 39.9 366 15-509 3-378 (382)
16 TIGR00774 NhaB Na+/H+ antiport 100.0 1.9E-39 4.2E-44 332.2 35.9 376 46-509 75-495 (515)
17 COG0471 CitT Di- and tricarbox 100.0 4.1E-39 8.8E-44 343.8 33.8 383 34-509 50-452 (461)
18 PF00939 Na_sulph_symp: Sodium 100.0 8E-38 1.7E-42 336.0 34.1 406 4-508 27-460 (471)
19 PF03600 CitMHS: Citrate trans 100.0 3.2E-37 7E-42 319.3 34.6 304 33-444 18-341 (351)
20 TIGR00784 citMHS citrate trans 100.0 3.3E-27 7.2E-32 250.4 38.8 353 63-507 57-420 (431)
21 KOG1281 Na+/dicarboxylate, Na+ 99.9 5.8E-25 1.3E-29 231.4 28.5 409 7-505 42-565 (586)
22 PRK09412 anaerobic C4-dicarbox 99.9 3E-19 6.6E-24 189.0 33.3 158 37-198 26-186 (433)
23 cd01116 P_permease Permease P 99.9 1.5E-20 3.3E-25 198.9 21.6 183 11-195 219-408 (413)
24 TIGR00786 dctM TRAP transporte 99.8 9.7E-18 2.1E-22 177.2 37.3 345 57-508 31-394 (405)
25 PRK15445 arsenical pump membra 99.8 7.9E-20 1.7E-24 194.3 21.3 187 10-199 224-420 (427)
26 cd01115 SLC13_permease Permeas 99.8 1.9E-19 4.1E-24 188.5 22.1 163 35-198 213-377 (382)
27 PLN00136 silicon transporter; 99.8 5.1E-20 1.1E-24 197.3 16.8 167 333-509 33-199 (482)
28 TIGR00935 2a45 arsenical pump 99.8 7E-19 1.5E-23 187.2 23.5 186 10-200 225-422 (429)
29 TIGR00785 dass anion transport 99.8 1.3E-18 2.8E-23 186.0 23.6 185 10-196 249-437 (444)
30 COG0471 CitT Di- and tricarbox 99.8 6.9E-18 1.5E-22 180.7 22.0 165 34-199 286-452 (461)
31 PRK12489 anaerobic C4-dicarbox 99.8 5.1E-16 1.1E-20 162.8 34.3 154 37-196 26-189 (443)
32 cd01118 ArsB_permease Anion pe 99.8 6.9E-18 1.5E-22 178.9 19.6 169 332-509 19-192 (416)
33 TIGR00770 Dcu anaerobic c4-dic 99.8 4.5E-16 9.8E-21 164.3 32.9 165 37-207 22-190 (430)
34 PF00939 Na_sulph_symp: Sodium 99.8 1E-17 2.2E-22 180.4 20.9 195 10-207 269-468 (471)
35 COG1055 ArsB Na+/H+ antiporter 99.8 1.7E-17 3.6E-22 173.7 20.2 186 9-197 224-419 (424)
36 PRK09547 nhaB sodium/proton an 99.8 5.1E-17 1.1E-21 171.7 21.5 161 34-199 319-496 (513)
37 cd01117 YbiR_permease Putative 99.7 1.8E-16 4E-21 166.2 17.6 166 333-508 11-176 (384)
38 KOG2639 Sodium sulfate symport 99.7 3.6E-16 7.8E-21 161.5 17.5 164 35-198 497-674 (685)
39 PF03600 CitMHS: Citrate trans 99.7 3.1E-15 6.7E-20 155.0 18.3 170 330-507 15-189 (351)
40 cd00625 ArsB_NhaD_permease Ani 99.7 9.7E-16 2.1E-20 161.2 14.1 167 333-509 9-176 (396)
41 PLN00137 NHAD transporter fami 99.6 6.9E-14 1.5E-18 147.9 18.0 155 33-195 248-414 (424)
42 TIGR00775 NhaD Na+/H+ antiport 99.6 1.1E-13 2.3E-18 146.5 17.8 153 32-195 242-406 (420)
43 PRK10654 dcuC C4-dicarboxylate 99.5 1.3E-10 2.9E-15 123.5 40.3 344 66-507 80-445 (455)
44 KOG1281 Na+/dicarboxylate, Na+ 99.5 1.5E-13 3.3E-18 145.6 9.6 145 52-197 422-567 (586)
45 TIGR00771 DcuC c4-dicarboxylat 99.4 3.4E-10 7.4E-15 118.6 33.7 348 55-502 12-387 (388)
46 PF02040 ArsB: Arsenical pump 99.4 6.7E-12 1.5E-16 132.0 20.2 164 31-195 242-415 (423)
47 TIGR00784 citMHS citrate trans 99.4 2.2E-11 4.9E-16 129.6 20.8 177 10-195 232-418 (431)
48 TIGR00774 NhaB Na+/H+ antiport 99.4 4.9E-11 1.1E-15 123.8 19.4 161 35-200 319-496 (515)
49 PF03606 DcuC: C4-dicarboxylat 99.3 1.1E-08 2.3E-13 110.0 35.3 137 65-204 80-220 (465)
50 TIGR00786 dctM TRAP transporte 99.2 9.7E-10 2.1E-14 116.3 22.3 144 49-194 240-390 (405)
51 COG2851 CitM H+/citrate sympor 99.2 4.5E-08 9.8E-13 98.6 29.8 342 61-495 57-410 (433)
52 TIGR00791 gntP gluconate trans 99.2 7.7E-07 1.7E-11 95.3 40.5 154 36-191 25-185 (440)
53 TIGR00529 AF0261 converved hyp 99.2 4.1E-07 8.9E-12 95.3 37.2 150 37-193 25-180 (387)
54 PRK12489 anaerobic C4-dicarbox 99.1 1.8E-09 3.9E-14 113.8 18.7 176 324-508 12-191 (443)
55 PRK09412 anaerobic C4-dicarbox 99.1 5.6E-09 1.2E-13 111.0 18.9 165 333-508 22-186 (433)
56 PF06450 NhaB: Bacterial Na+/H 99.0 3.3E-08 7.2E-13 99.9 21.7 370 46-508 75-495 (515)
57 PF07158 MatC_N: Dicarboxylate 99.0 2.1E-08 4.5E-13 90.1 17.2 126 29-156 21-149 (149)
58 PF03605 DcuA_DcuB: Anaerobic 99.0 2.4E-07 5.3E-12 94.0 25.9 164 27-197 14-182 (364)
59 PRK11588 hypothetical protein; 99.0 2E-06 4.3E-11 91.9 33.9 128 77-205 124-253 (506)
60 PF02447 GntP_permease: GntP f 99.0 2.1E-06 4.6E-11 91.1 34.1 163 37-208 26-198 (441)
61 PF04165 DUF401: Protein of un 99.0 6.4E-06 1.4E-10 86.0 36.7 350 31-508 20-381 (385)
62 PRK10654 dcuC C4-dicarboxylate 99.0 7.4E-08 1.6E-12 102.7 22.4 190 7-198 242-446 (455)
63 PF06808 DctM: DctM-like trans 99.0 3.1E-06 6.7E-11 89.9 33.9 340 57-503 46-405 (416)
64 PRK09821 putative transporter; 98.9 9.6E-06 2.1E-10 86.3 35.3 152 37-193 30-191 (454)
65 PRK15060 L-dehydroascorbate tr 98.9 3.5E-05 7.6E-10 81.5 39.0 345 55-504 45-406 (425)
66 PRK14984 high-affinity glucona 98.9 8.2E-06 1.8E-10 86.4 33.9 157 34-192 23-186 (438)
67 COG3067 NhaB Na+/H+ antiporter 98.8 8.8E-07 1.9E-11 87.8 22.2 140 47-188 76-249 (516)
68 PRK10472 low affinity gluconat 98.8 3.7E-05 8E-10 81.7 35.8 155 36-193 29-191 (445)
69 PRK10034 fructuronate transpor 98.8 5.8E-05 1.3E-09 80.3 37.0 154 36-191 28-188 (447)
70 TIGR00770 Dcu anaerobic c4-dic 98.7 4.9E-07 1.1E-11 95.9 18.1 166 332-508 17-182 (430)
71 COG2610 GntT H+/gluconate symp 98.7 0.00018 4E-09 75.9 36.1 152 37-190 27-185 (442)
72 PRK09804 putative cryptic C4-d 98.7 0.0004 8.7E-09 73.3 37.7 347 64-506 75-447 (455)
73 PRK09921 permease DsdX; Provis 98.7 0.0004 8.7E-09 74.2 37.5 154 37-194 31-192 (445)
74 COG1288 Predicted membrane pro 98.6 8.9E-06 1.9E-10 84.1 23.7 127 79-206 113-241 (481)
75 COG1593 DctQ TRAP-type C4-dica 98.6 0.0003 6.6E-09 72.5 33.8 326 73-503 17-359 (379)
76 COG1593 DctQ TRAP-type C4-dica 98.6 5.4E-06 1.2E-10 85.1 21.0 144 47-192 208-358 (379)
77 TIGR02123 TRAP_fused TRAP tran 98.6 0.0003 6.4E-09 78.0 35.9 101 363-465 391-492 (613)
78 TIGR00771 DcuC c4-dicarboxylat 98.6 3.1E-06 6.7E-11 88.9 19.4 144 47-192 232-387 (388)
79 PF07399 DUF1504: Protein of u 98.6 6.4E-05 1.4E-09 77.2 27.9 331 54-504 86-434 (438)
80 PRK15060 L-dehydroascorbate tr 98.5 1.9E-05 4.2E-10 83.5 22.5 161 32-194 237-406 (425)
81 TIGR00931 antiport_nhaC Na+/H+ 98.5 0.0031 6.8E-08 67.7 42.2 146 51-198 49-201 (454)
82 COG2704 DcuB Anaerobic C4-dica 98.5 5.5E-06 1.2E-10 83.5 16.4 165 27-198 18-186 (436)
83 PF07158 MatC_N: Dicarboxylate 98.3 2.8E-05 6E-10 70.1 16.0 121 324-445 14-136 (149)
84 PRK11339 abgT putative aminobe 98.3 0.0042 9.1E-08 66.8 34.9 93 62-158 87-179 (508)
85 PF06808 DctM: DctM-like trans 98.1 0.00017 3.7E-09 76.7 18.7 141 49-191 256-403 (416)
86 PF07854 DUF1646: Protein of u 98.1 0.00068 1.5E-08 67.8 20.7 94 100-194 100-193 (347)
87 TIGR00819 ydaH p-Aminobenzoyl- 98.0 0.035 7.6E-07 60.0 34.4 85 70-159 92-176 (513)
88 COG2056 Predicted permease [Ge 98.0 0.03 6.5E-07 57.0 31.3 149 39-187 25-197 (444)
89 TIGR02123 TRAP_fused TRAP tran 97.9 0.0023 4.9E-08 71.1 22.6 163 30-194 348-522 (613)
90 TIGR00931 antiport_nhaC Na+/H+ 97.8 0.00086 1.9E-08 72.0 17.8 122 64-186 310-432 (454)
91 PF02652 Lactate_perm: L-lacta 97.8 0.09 1.9E-06 57.5 40.0 134 356-505 380-515 (522)
92 COG1757 NhaC Na+/H+ antiporter 97.8 0.092 2E-06 57.0 34.3 117 77-195 97-214 (485)
93 PRK09804 putative cryptic C4-d 97.8 0.0044 9.5E-08 65.6 21.3 191 7-198 240-449 (455)
94 PF03553 Na_H_antiporter: Na+/ 97.7 0.0025 5.5E-08 64.7 18.5 105 64-168 162-267 (303)
95 COG1906 Uncharacterized conser 97.7 0.073 1.6E-06 53.4 28.2 147 39-192 28-181 (388)
96 COG3069 DcuC C4-dicarboxylate 97.5 0.065 1.4E-06 54.9 24.1 136 64-207 74-218 (451)
97 PF03605 DcuA_DcuB: Anaerobic 97.4 0.0037 8.1E-08 64.0 14.4 170 326-508 10-183 (364)
98 TIGR00791 gntP gluconate trans 97.2 0.027 5.9E-07 60.4 19.1 168 329-508 18-193 (440)
99 COG1757 NhaC Na+/H+ antiporter 97.2 0.013 2.8E-07 63.5 16.6 124 65-188 325-450 (485)
100 PF03606 DcuC: C4-dicarboxylat 97.1 0.015 3.2E-07 62.8 16.5 152 43-198 293-459 (465)
101 PF03806 ABG_transport: AbgT p 96.9 0.89 1.9E-05 49.1 32.9 98 62-169 77-174 (502)
102 PRK11588 hypothetical protein; 96.8 0.13 2.7E-06 55.7 20.1 147 50-197 335-495 (506)
103 COG3069 DcuC C4-dicarboxylate 96.8 0.04 8.6E-07 56.4 14.8 129 64-194 311-441 (451)
104 PRK09695 glycolate transporter 96.6 1.6 3.6E-05 48.1 38.4 132 356-503 408-541 (560)
105 COG2056 Predicted permease [Ge 96.6 0.11 2.4E-06 53.1 16.1 152 39-194 268-440 (444)
106 COG2851 CitM H+/citrate sympor 96.5 0.082 1.8E-06 54.3 15.1 152 28-185 249-410 (433)
107 TIGR00795 lctP L-lactate trans 96.5 1.8 3.8E-05 47.7 41.4 128 363-505 392-521 (530)
108 PRK10420 L-lactate permease; P 96.3 2.4 5.2E-05 46.8 39.8 126 363-503 406-533 (551)
109 TIGR00529 AF0261 converved hyp 96.3 0.3 6.6E-06 51.5 18.3 161 331-509 19-186 (387)
110 PF04165 DUF401: Protein of un 96.0 0.82 1.8E-05 48.1 19.6 139 44-194 231-377 (385)
111 PF02652 Lactate_perm: L-lacta 95.9 0.3 6.5E-06 53.4 16.8 133 51-191 368-511 (522)
112 PRK11339 abgT putative aminobe 95.8 1.5 3.3E-05 47.6 21.1 156 52-208 327-498 (508)
113 PRK10472 low affinity gluconat 95.8 1 2.2E-05 48.3 19.6 162 329-504 22-192 (445)
114 COG4664 FcbT3 TRAP-type mannit 95.6 3.2 6.9E-05 42.4 23.9 355 54-507 55-430 (447)
115 TIGR00819 ydaH p-Aminobenzoyl- 95.6 2.2 4.7E-05 46.5 21.3 153 52-208 329-501 (513)
116 PRK10034 fructuronate transpor 95.4 1.4 2.9E-05 47.4 18.9 162 329-503 21-190 (447)
117 PF02447 GntP_permease: GntP f 95.2 1.5 3.3E-05 47.0 18.5 164 330-507 19-191 (441)
118 TIGR00795 lctP L-lactate trans 94.8 0.96 2.1E-05 49.7 16.2 131 52-190 375-516 (530)
119 PF07854 DUF1646: Protein of u 94.6 0.048 1E-06 54.9 4.8 74 111-194 265-339 (347)
120 PRK14984 high-affinity glucona 94.5 2.5 5.5E-05 45.2 18.1 159 330-504 19-188 (438)
121 COG1288 Predicted membrane pro 94.4 2 4.4E-05 45.3 16.3 145 48-196 316-472 (481)
122 PRK10420 L-lactate permease; P 94.2 1.9 4.2E-05 47.5 16.6 111 52-170 389-507 (551)
123 COG4756 Predicted cation trans 94.2 1.4 3E-05 43.2 13.5 64 108-174 122-187 (367)
124 PRK09821 putative transporter; 94.1 7.3 0.00016 42.0 20.5 166 329-509 22-197 (454)
125 PRK09695 glycolate transporter 94.1 1.5 3.3E-05 48.4 15.6 100 63-170 414-515 (560)
126 COG2704 DcuB Anaerobic C4-dica 93.9 0.15 3.2E-06 52.3 6.7 165 332-508 21-186 (436)
127 COG4664 FcbT3 TRAP-type mannit 93.6 4.3 9.4E-05 41.5 16.3 159 32-194 257-427 (447)
128 PRK09921 permease DsdX; Provis 93.5 6.6 0.00014 42.3 19.0 161 330-505 24-193 (445)
129 COG1620 LldP L-lactate permeas 93.3 2.4 5.3E-05 45.8 15.0 114 50-170 360-480 (522)
130 TIGR00366 conserved hypothetic 93.2 14 0.0003 39.5 26.4 78 73-152 65-143 (438)
131 COG2610 GntT H+/gluconate symp 92.6 12 0.00026 40.1 19.0 162 329-503 19-188 (442)
132 PF02667 SCFA_trans: Short cha 91.9 20 0.00044 38.4 26.6 80 72-153 67-147 (453)
133 TIGR00366 conserved hypothetic 91.5 6.5 0.00014 41.9 15.3 109 51-160 291-411 (438)
134 PF03553 Na_H_antiporter: Na+/ 91.2 5 0.00011 40.5 14.1 111 358-471 157-268 (303)
135 COG4756 Predicted cation trans 91.2 0.17 3.8E-06 49.2 3.1 71 111-191 277-348 (367)
136 COG4666 TRAP-type uncharacteri 88.3 42 0.00091 37.4 18.6 119 68-191 190-316 (642)
137 PF06166 DUF979: Protein of un 87.4 35 0.00075 34.5 17.9 143 353-507 152-301 (308)
138 PF03806 ABG_transport: AbgT p 85.5 60 0.0013 35.4 17.9 153 52-208 322-493 (502)
139 PRK10519 hypothetical protein; 83.9 32 0.0007 31.3 12.9 132 355-510 16-148 (151)
140 PF02690 Na_Pi_cotrans: Na+/Pi 82.0 8.6 0.00019 34.6 8.4 83 68-160 2-85 (142)
141 PF07399 DUF1504: Protein of u 80.0 29 0.00063 36.6 12.4 132 39-191 286-431 (438)
142 PF06450 NhaB: Bacterial Na+/H 76.4 41 0.00089 35.4 12.1 155 35-194 320-491 (515)
143 COG1620 LldP L-lactate permeas 76.4 1.2E+02 0.0027 33.1 35.0 132 356-503 373-506 (522)
144 PF02667 SCFA_trans: Short cha 73.9 56 0.0012 35.1 12.8 122 67-194 322-445 (453)
145 TIGR00704 NaPi_cotrn_rel Na/Pi 63.8 43 0.00093 34.2 9.2 86 66-160 12-97 (307)
146 PF02690 Na_Pi_cotrans: Na+/Pi 54.7 67 0.0015 28.8 7.9 85 367-463 1-86 (142)
147 PF03977 OAD_beta: Na+-transpo 51.6 19 0.00041 36.9 4.1 26 68-93 214-239 (360)
148 COG1283 NptA Na+/phosphate sym 51.3 1.2E+02 0.0027 33.3 10.5 88 67-163 142-230 (533)
149 TIGR01109 Na_pump_decarbB sodi 47.8 27 0.00059 35.7 4.5 25 68-92 214-238 (354)
150 TIGR00704 NaPi_cotrn_rel Na/Pi 45.4 3.5E+02 0.0076 27.6 12.7 92 361-463 132-224 (307)
151 PF06166 DUF979: Protein of un 45.2 3.5E+02 0.0076 27.5 14.9 138 58-200 157-304 (308)
152 TIGR03136 malonate_biotin Na+- 44.5 32 0.00069 35.8 4.5 24 68-92 252-275 (399)
153 COG3067 NhaB Na+/H+ antiporter 41.8 1.8E+02 0.0039 30.0 9.2 149 36-190 321-487 (516)
154 COG1283 NptA Na+/phosphate sym 40.8 2.9E+02 0.0063 30.5 11.3 91 363-464 138-229 (533)
155 PRK15475 oxaloacetate decarbox 39.8 39 0.00084 35.2 4.2 25 68-92 285-309 (433)
156 PF06149 DUF969: Protein of un 39.7 3.6E+02 0.0077 26.1 15.0 177 326-507 11-207 (218)
157 PRK15477 oxaloacetate decarbox 39.3 40 0.00087 35.1 4.3 25 68-92 285-309 (433)
158 PRK15476 oxaloacetate decarbox 39.2 40 0.00087 35.1 4.3 25 68-92 285-309 (433)
159 PF13726 Na_H_antiport_2: Na+- 38.5 2.3E+02 0.0049 23.4 9.2 57 39-95 24-86 (88)
160 TIGR00825 EIIBC-GUT PTS system 36.8 67 0.0015 32.3 5.2 99 55-154 179-279 (331)
161 COG3817 Predicted membrane pro 34.5 4.8E+02 0.01 26.0 12.2 139 354-505 157-303 (313)
162 COG2978 AbgT Putative p-aminob 33.3 6.6E+02 0.014 27.3 13.1 121 76-200 364-497 (516)
163 TIGR00825 EIIBC-GUT PTS system 25.2 1.3E+02 0.0028 30.4 5.0 67 355-423 179-247 (331)
164 COG0700 SpmB Uncharacterized m 24.6 4E+02 0.0087 24.3 7.6 126 364-510 33-158 (162)
165 PRK04125 murein hydrolase regu 23.7 5.4E+02 0.012 23.1 9.2 60 1-60 1-61 (141)
166 COG2978 AbgT Putative p-aminob 23.5 9.8E+02 0.021 26.1 25.5 93 62-158 88-180 (516)
No 1
>PLN00136 silicon transporter; Provisional
Probab=100.00 E-value=1.3e-63 Score=532.03 Aligned_cols=477 Identities=57% Similarity=0.966 Sum_probs=361.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHH
Q 010427 1 MALAPTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLE 80 (511)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~ 80 (511)
|++....|++....++..+|.+.++.+.+.++++++.++++++++++++|+++++|+++.+||+++++++|||+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~i~~~~~Allga~llll~g~~~~~~a~~~i~~~tl~ll~gmmii~~~L~ 80 (482)
T PLN00136 1 MALASLPKVVLGSLAFGVFWMLAVFPSVPFLPIGRTAGALLSAVLMIVFHVISPDDAYASIDLPILGLLFATMVVGSYLK 80 (482)
T ss_pred CCCCcccchhhHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 45666778888888888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCccc
Q 010427 81 RAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATP 160 (511)
Q Consensus 81 ~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~Tp 160 (511)
++|+++++++++.+..++++++++.++++++++|+|++|++++++++|+++++|++.|++|.+++++++++||+||.+||
T Consensus 81 ~tG~~~~ia~~l~~~~~~~~~ll~~l~~~ta~lSafl~N~~t~llm~Piv~~la~~~~~~p~~~ll~la~aAn~Gg~~Tp 160 (482)
T PLN00136 81 NAGMFKHLGRLLAWRSQGGRDLLCRVCVVTALASALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATP 160 (482)
T ss_pred HcCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhh
Confidence 99999999999988777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccc
Q 010427 161 IGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVND 240 (511)
Q Consensus 161 iG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (511)
+|||+|+++++.++++|.||++.++|..++++++...+++++|||.++.+.+.+....+.+...+.+.+++...
T Consensus 161 iG~p~Nlii~~~~~i~F~dF~~~~~P~~li~l~v~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 234 (482)
T PLN00136 161 IGNPQNLVIAFNSKITFPKFLLGILPAMLAGMAVNMVMLLCMYWKDLDGGAELSVDGKQMEAVEEGRSPASAKS------ 234 (482)
T ss_pred ccccchheeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcccchhhhhhhcccccchhhh------
Confidence 99999999999889999999999999999999999888899999988643221000000000000000000000
Q ss_pred cccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHH
Q 010427 241 SKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYL 320 (511)
Q Consensus 241 ~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (511)
..|.. +-++....+.+ .+...+...+ .+.+.++..+. +...++++.+.+.+...
T Consensus 235 -----~~~~~----~~~~~~~~~~~---------~~~~~~~~~~-----~~~~~~~~~~~---~~~i~~~~ll~~~~~~~ 288 (482)
T PLN00136 235 -----TKQQS----PALLQAGLNGD---------GNGDMSSMMS-----ENISTKHPWFM---QCTEHRRKLFLKSFAYV 288 (482)
T ss_pred -----hhhhh----hhhhhcccccc---------ccchhHHHhh-----ccccccccccc---cchhccHHHHHHHHHHH
Confidence 00000 00000000000 0000000000 00000000000 00012233333444333
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhccc
Q 010427 321 VILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINR 400 (511)
Q Consensus 321 i~~~~l~~~~~~l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~ 400 (511)
+++.+++....|+|++++++.++.++++.+.++.+|+++++||++++||+|+|+++++++++|+.+++++.+....+.+.
T Consensus 289 v~~~~l~~f~~g~p~~~iAl~~a~~lll~~~~~~~~~l~~v~W~~Llff~GlFilv~~l~~tGl~~~i~~~l~~~~~~~~ 368 (482)
T PLN00136 289 VTVGMVVAYMVGLNMSWTAITTAIALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNS 368 (482)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCh
Confidence 34444455568899999999999998888888999999999999999999999999999999999999998876644333
Q ss_pred chhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCC
Q 010427 401 VGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKP 480 (511)
Q Consensus 401 ~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ 480 (511)
......+.+++.++|+++||+|++++|.|++...........+...|+.+++++|.|||+||+||.+|+++.+.+||.+.
T Consensus 369 ~~~~~~~~~~s~~lS~~isNvp~~~~m~p~v~~~~~~~~~~~~~~~~~~la~ga~lGGn~TliGs~ANli~~~~~~~~~~ 448 (482)
T PLN00136 369 VGGISVLSVIILLLSNLASNVPTVLLMGDEVAAAAALISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRAPR 448 (482)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHhhccceeeccchhHHHHHHHHHHhhc
Confidence 33445566788999999999999999999665322211111123578889999999999999999999999999987433
Q ss_pred CCceeecchhhhhhhHHHHHHHHHHHHHh
Q 010427 481 SGYTLSFWTHLKFGLPSTIVITAIGLALI 509 (511)
Q Consensus 481 ggy~i~f~df~k~G~plt~l~~iv~~~~i 509 (511)
+||+++|+||+|+|+|.++++++++.+++
T Consensus 449 ~G~~isf~~f~k~G~P~~l~~~~i~~~~~ 477 (482)
T PLN00136 449 NAYDLTFWQHIVFGVPSTLIVTAIGIPLI 477 (482)
T ss_pred cCCcccHHHHHHHhHHHHHHHHHHHHHHH
Confidence 69999999999999999999999998875
No 2
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-58 Score=465.73 Aligned_cols=469 Identities=28% Similarity=0.428 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHH
Q 010427 9 VVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYL 88 (511)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~i 88 (511)
..++..+++.+|++++|+..++++..+....+.++.+.++....+++++.+.+|++++.+++|||+++..+++||+|||+
T Consensus 178 v~~aa~il~gfyaLiVfe~v~rt~aa~~~s~ls~a~Lavi~~rptle~iv~wID~etL~LLfGmMilv~ilseTg~FdYl 257 (685)
T KOG2639|consen 178 VLYAAVILAGFYALIVFEIVDRTFAAMLASTLSLAILAVIGDRPTLETIVSWIDFETLGLLFGMMILVAILSETGVFDYL 257 (685)
T ss_pred hHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 78899999999999999998888888777777777888888889999999999999999999999999999999999999
Q ss_pred HHHHHHhccCc-hhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchh
Q 010427 89 EIVLSWRSRGA-KDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNL 167 (511)
Q Consensus 89 a~~l~~~~~~~-~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nl 167 (511)
|...-+.++++ |.++..+|++++++|+|+||++++++++|+++++|+.++++|.|+++.+++.||+||.+||||+|||+
T Consensus 258 av~ayriSrG~~w~li~~Lclvtav~Sa~ldN~TtvLLltpv~IRLcevm~L~p~pvLi~~vi~aNIGga~TPIGdPpNv 337 (685)
T KOG2639|consen 258 AVLAYRISRGHVWPLICLLCLVTAVLSAFLDNVTTVLLLTPVVIRLCEVMNLDPHPVLIAVVIYANIGGAATPIGDPPNV 337 (685)
T ss_pred HHHHhhHhcCCchHHHHHHHHHHHHHHHHhcCCeEEEEecHHHHHHHHHhcCCCCceEEEEEEecccccccCcCCCCCcE
Confidence 99988888875 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccC-----CCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcc-----cc-CCCCCCCcCCCcccccc
Q 010427 168 VIALQ-----SGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAF-----AE-DDDTSPHCFSPMCMSSI 236 (511)
Q Consensus 168 iv~~~-----~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~ 236 (511)
++..+ .|++|.+|..+++|..+..++.+..+ +|++....++.... .+ ++++..++.++..-.
T Consensus 338 IIatns~i~~~gv~f~~Ftahm~pgvlla~l~~~~~-----lrlly~~~~~l~~k~~~e~~el~~ei~v~r~~~~~~s-- 410 (685)
T KOG2639|consen 338 IIATNSEIPKAGVDFAVFTAHMLPGVLLAMLQTFMY-----LRLLYWNIEELMVKEPDEEVELKHEIHVWRLAAAQVS-- 410 (685)
T ss_pred EEEecceecccCcchhhhhHHHHHHHHHHHHHHhhh-----HhhheechHHHhccCchHHHHHHHHHHHhhcCHhhcC--
Confidence 99854 46899999999999988776665443 44443321110000 00 001111111110000
Q ss_pred cccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcc--ccccccc--CCcccchhhH
Q 010427 237 NVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPK--LAEGKKD--NTQKWDWKRV 312 (511)
Q Consensus 237 ~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~ 312 (511)
.-+++++..|+. ..+|+ + ..+.+-|+++......++. .++.+.. ++...++|..
T Consensus 411 --~~sk~~envR~~--~~~~i-----------------~-~r~~~lr~r~~~~~~~~~a~~y~~tl~~l~~~~~irnk~l 468 (685)
T KOG2639|consen 411 --PASKEEENVRRT--LSAKI-----------------R-ARARSLRERLPTSCNSNPAENYFNTLAELQAKNRIRNKTL 468 (685)
T ss_pred --cccchHHHHHHH--HHHHH-----------------H-HHHHHHhhhccccccCCccHHHHhhHHHHhhhcccccHHH
Confidence 000000111110 00000 0 0000111111111101000 0111111 1122233333
Q ss_pred HHHHHHH--HHHHHHHHH----HHhCCcHHHHHHHHHHHH-HHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChH
Q 010427 313 SWKTCTY--LVILGMLIA----LLMGLNMSWTALTAALVL-VVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIP 385 (511)
Q Consensus 313 ~~~~~~~--~i~~~~l~~----~~~~l~~~~~al~~a~~l-~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~ 385 (511)
+.+.... ++.+.+++. ...|++++|+|.+||.++ ++.+.+|.+..+++++|++++||++||++..+++++|+.
T Consensus 469 l~k~~~aL~fviv~F~l~svp~~~~gl~LgW~AIlgA~llLIl~d~~D~e~il~rVews~LLFfaalFI~~e~v~~lGli 548 (685)
T KOG2639|consen 469 LIKCLRALWFVIVCFFLQSVPSLHMGLSLGWTAILGAILLLILADIKDIEAILHRVEWSTLLFFAALFILMEAVDKLGLI 548 (685)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHhcCCCccHHHHHHHHHHHHHhchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCHH
Confidence 3333221 122222221 224789999999977654 456788999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcccc-h----hHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc-cccCcchhHHHHHHHHHHhhhcC
Q 010427 386 STLWTLMEPHARINRV-G----GISILAIIILVLSNVASNVPTVLLLGARVAASAG-AISESEEKKAWLILAWVSTVAGN 459 (511)
Q Consensus 386 ~~ia~~l~~~~~~~~~-~----~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a-~~~~~~~~~~~~~l~~~~~~gg~ 459 (511)
+|+++...+.....+. . ...++.++++++|.|++|+|.+++|.++.....+ ...|.+.++.-|.+++++|.|||
T Consensus 549 ~~l~dlte~vil~v~e~~~~~vAi~iilw~SAlasafidNipvt~~mVkl~~~lv~~~~~glpl~pliWaL~~ga~~gGN 628 (685)
T KOG2639|consen 549 EWLGDLTEPVILSVGESYRLMVAIVIILWVSALASAFIDNIPVTAIMVKLLTSLVANSAVGLPLQPLIWALALGACLGGN 628 (685)
T ss_pred HHHHHhhhHHhhhcchhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhccccCCCcchHHHHHHhhhhhcCC
Confidence 9999998765432222 2 1223345778899999999999999994433222 23444544567889999999999
Q ss_pred hhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHHHh
Q 010427 460 LSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALI 509 (511)
Q Consensus 460 lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~i 509 (511)
+|++|+.||+++.+.+++ +|||++|.+|+|+|+|+++.+..+++.++
T Consensus 629 gTLiGasANvv~A~iAeq---HGYkltF~~fF~~GfPmml~si~i~t~yL 675 (685)
T KOG2639|consen 629 GTLIGASANVVAAGIAEQ---HGYKLTFTQFFKVGFPMMLGSITIGTVYL 675 (685)
T ss_pred ceeechhhHHHHHHHHHH---cCceEEehhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999888765 79999999999999999999999988765
No 3
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-56 Score=461.57 Aligned_cols=387 Identities=32% Similarity=0.520 Sum_probs=322.3
Q ss_pred chhHHHHHHHHHHHHHhcCCChHHHHH--hCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccC-chhHHHHHHHH
Q 010427 33 IGRTAGALLGAMLMIIFKVITPEEAFA--AIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRG-AKDLLCRICFI 109 (511)
Q Consensus 33 i~~~~~al~~~~~l~~~g~~~~~~a~~--~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~-~~~ll~~~~~~ 109 (511)
.++++.++.|+.+++.+|+++++|+.. +.+|++++++.|||+++..++++|+|+|.|.++.+.+++ ++++++.+.++
T Consensus 24 ~~~~~~a~~Ga~l~l~~giv~~~d~~~~~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a~~~v~~s~g~~~~L~~~l~ll 103 (424)
T COG1055 24 LPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLLLGMMIIVLLLDESGFFEWLAIKMVKRSKGSGLKLLLLLVLL 103 (424)
T ss_pred CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 456688999999999999999999998 689999999999999999999999999999999988876 89999999999
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHH
Q 010427 110 SALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSML 189 (511)
Q Consensus 110 ~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~i 189 (511)
++++|+|++||+++++++|+++.++++.|.+|.|+++.++++||+||..||+|||||++++...|++|.||...+.|+.+
T Consensus 104 ~a~~SA~l~N~tt~LlltPivl~~~~~~~~~~~p~l~~~~f~aN~gg~~t~iGdp~niii~~~~gisF~~f~~~m~~p~l 183 (424)
T COG1055 104 GALLSAFLDNDTTALLLTPIVLAVARALGVNPVPFLIAEVFIANIGGLATPVGDPPNIIIASAAGISFNDFLANMFPPSL 183 (424)
T ss_pred HHHHHHHHcccceeehhhhHHHHHHHHcCCCccHHHHHHHHHHcccccccccCChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCccccc
Q 010427 190 VGVFVNTLILLCMY-WRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFEST 268 (511)
Q Consensus 190 i~l~~~~~~~~~~~-~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~ 268 (511)
+++++...+++++| +|..|++.+.+ + +
T Consensus 184 ~~li~~~~vl~~~~~~~~~~~~~~~~------~------------------~---------------------------- 211 (424)
T COG1055 184 ISLIATLVVLYLLFRRKVIPERYDDL------L------------------L---------------------------- 211 (424)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhh------c------------------c----------------------------
Confidence 99988877777666 33333111100 0 0
Q ss_pred ccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHH--HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 010427 269 QNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCT--YLVILGMLIALLMGLNMSWTALTAALVL 346 (511)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~l~~~~~~l~~~~~al~~a~~l 346 (511)
+++++..+.++...+... ..+.+++......++++..+++.++.++
T Consensus 212 --------------------------------~~~~~ai~~~~l~~~~~~vl~~vli~f~~~~~~~i~~~~val~~a~il 259 (424)
T COG1055 212 --------------------------------LDPREAIRDRALFKLSLVVLALVLIAFLLLPFLGIPVSLVALVGAAIL 259 (424)
T ss_pred --------------------------------cChhcccccHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 000001112222222222 2233444444557899999999999988
Q ss_pred HHhccCChHH----HHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHH
Q 010427 347 VVLDFKDAMP----CLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVP 422 (511)
Q Consensus 347 ~~~~~~~~~~----~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a 422 (511)
.+...++++| .++++||++++||+|+|++++|++++|..+.+++.+....+.+........+++++++|+++||.|
T Consensus 260 l~~~~~~~~~~~~~il~~v~W~~l~Ff~Glfi~V~gl~~~Gv~~~la~~l~~~~~~~~~~~~~~~~~~s~~lSsv~~NvP 339 (424)
T COG1055 260 LLLARLSPRESVNKILRGVEWSTLLFFIGLFIVVGGLENAGVTEDLASVLKALSSGGLAAATLGIGWLSGLLSSVLDNVP 339 (424)
T ss_pred HHHhccCcchhHHHhhhcCChHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccch
Confidence 8877677777 999999999999999999999999999999999999877654445556667889999999999999
Q ss_pred HHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHH
Q 010427 423 TVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVIT 502 (511)
Q Consensus 423 ~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~ 502 (511)
+++.+.|.+....... ... ...|+..+++++.|||+|||||.+|+++++.+|| +|.+++|++|+|+|.|.++..+
T Consensus 340 ~vl~~~~~i~~~~~~~-~~~-~~lw~A~a~Ga~lGgnlT~IGs~Anlv~~~i~~~---~g~~is~~~f~k~g~~i~~~~l 414 (424)
T COG1055 340 TVLTFAPIIKGLAANG-MGK-EPLWLALALGADLGGNLTPIGSAANLVWLGVLER---KGVPISFGEFFKVGIIVTLPSL 414 (424)
T ss_pred HHHHHHHHHHhhcccc-cch-HHHHHHHHHhCccccchhhhhhHHHHHHHHHHHH---CCCcccHHHHHHHHHHHHHHHH
Confidence 9999999664432221 111 2479999999999999999999999999999987 4888999999999999999999
Q ss_pred HHHHHH
Q 010427 503 AIGLAL 508 (511)
Q Consensus 503 iv~~~~ 508 (511)
+++...
T Consensus 415 ~i~~~~ 420 (424)
T COG1055 415 FITLLY 420 (424)
T ss_pred HHHHHH
Confidence 987654
No 4
>PRK15445 arsenical pump membrane protein; Provisional
Probab=100.00 E-value=7.9e-53 Score=446.96 Aligned_cols=405 Identities=21% Similarity=0.288 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHH--hCChhHHHHHHHHHHHHHHHHHhcHHHHH
Q 010427 11 LGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFA--AIDLSVLGLLFGTMVVSFYLERAGMFKYL 88 (511)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~--~~~~~~i~~l~g~~~i~~~l~~tG~~~~i 88 (511)
.++.+|+++++++++++ +.+| +++++++++.+++++|+++++|+++ +++|+++++++|+|+++.+++|+|+++++
T Consensus 2 ~~l~i~~~~~~~~~~~~-~~ip--~~~~all~~~ll~~~gv~~~~~a~~~~~~~~~~i~l~~g~~vi~~~l~~tGl~~~i 78 (427)
T PRK15445 2 LAIAIFLLTLVLVIWQP-KGLG--IGWSALLGAVLALLTGVVSLGDVPVVWGIVWNATLTFIAIIIISLLLDEAGFFEWA 78 (427)
T ss_pred HHHHHHHHHHHHHhccc-CCCC--hHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 35667777777777754 2344 4578999999999999999999986 69999999999999999999999999999
Q ss_pred HHHHHHhcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHhhccCccccccc
Q 010427 89 EIVLSWRSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSP---HPFLLALASSANVGSSATPIGNP 164 (511)
Q Consensus 89 a~~l~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p---~~~l~~~a~aan~Gg~~TpiG~p 164 (511)
++++.++.+ ++++++..++++++++|+|+||+++++++.|++..+|++.|.+| .+++++.++++|+||..||+|||
T Consensus 79 a~~~~~~~~~~~~~l~~~~~~~~~~ls~~~sn~~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~ig~~ 158 (427)
T PRK15445 79 ALHVARWAKGNGRKLFVYIVLLGAAVAALFANDGAALILTPIVLAMLLALGFSKKATLAFVMAAGFIADTASLPLVVSNL 158 (427)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcccchHHHHHHHHHhcccccccccCCc
Confidence 999987765 47888889999999999999999999999999999999999999 57889999999999999999999
Q ss_pred chhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccC
Q 010427 165 QNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCG 244 (511)
Q Consensus 165 ~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (511)
+|++..+..+++|.||++.++|+.++++++...+.++++|+..+++.+ +++ ++++
T Consensus 159 ~N~i~~~~~~i~f~d~~~~~~p~~ii~~~~~~~~~~~~~r~~~~~~~~-------~~~----------------~~~~-- 213 (427)
T PRK15445 159 VNIVSADYFGIGFAEYASVMVPVNLVSLAASLLVLWLYFRKDIPKTYD-------LEL----------------LKEP-- 213 (427)
T ss_pred hHhhhhccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCcccc-------ccc----------------ccCh--
Confidence 999988777899999999999999988877655555444433321100 000 0000
Q ss_pred CcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHH--HHH
Q 010427 245 NSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTY--LVI 322 (511)
Q Consensus 245 ~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~ 322 (511)
++..++++...+.... ...
T Consensus 214 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 234 (427)
T PRK15445 214 -----------------------------------------------------------ASAIKDPALFKLGWIVLALLL 234 (427)
T ss_pred -----------------------------------------------------------hhhccCHHHHHHHHHHHHHHH
Confidence 0000011111112211 112
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHh----ccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhc
Q 010427 323 LGMLIALLMGLNMSWTALTAALVLVVL----DFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARI 398 (511)
Q Consensus 323 ~~~l~~~~~~l~~~~~al~~a~~l~~~----~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~ 398 (511)
+++++....+++.++++++++.++++. ++.+.+|+++++||++++|++|+|++++++++||+.+++++.+....+.
T Consensus 235 ~~~~~~~~l~i~~~~va~~~a~ll~~~~~~~~~~~~~~~~~~v~W~~l~~~~g~~~l~~al~~tG~~~~la~~l~~~~~~ 314 (427)
T PRK15445 235 VGYFVLEPLGIPVSAIAGVGALILLLVARRGHAINTKKVLKGAPWQIVIFSLGMYLVVYGLRNAGLTDYLAGVLNYLADQ 314 (427)
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHhCChHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCC
Confidence 222333445789999999988887764 4678899999999999999999999999999999999999998654332
Q ss_pred ccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhcc
Q 010427 399 NRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRS 478 (511)
Q Consensus 399 ~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~ 478 (511)
+.......++.++.++||++||+|+++++.|.+. .++..+.++...++.++++++.|||+||+||+||+++.+.+|+
T Consensus 315 ~~~~~~~~~~~~s~~lS~~~sN~p~~~~~~~~i~--~~~~~~~~~~~l~~al~~ga~~gg~~T~iGs~an~i~~~~~~~- 391 (427)
T PRK15445 315 GLFAATLGTGFLAAFLSSVMNNMPTVLIGALAID--GSNATGVIKEAMIYANVIGSDLGPKITPIGSLATLLWLHVLAQ- 391 (427)
T ss_pred CHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhcccCcccchhhhHHHHHHHHHHHH-
Confidence 2222223456788999999999999998766442 2333344454567778999999999999999999999999887
Q ss_pred CCCCceeecchhhhhhhHHHHHHHHHHHH
Q 010427 479 KPSGYTLSFWTHLKFGLPSTIVITAIGLA 507 (511)
Q Consensus 479 ~~ggy~i~f~df~k~G~plt~l~~iv~~~ 507 (511)
+|||++|+||+|+|+|+++++++++..
T Consensus 392 --~g~~i~f~~f~k~G~~~~~~~~~~~~~ 418 (427)
T PRK15445 392 --KGVKISWGYYFKVGIIITLPVLLVTLL 418 (427)
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999887754
No 5
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=100.00 E-value=3.2e-51 Score=433.36 Aligned_cols=401 Identities=24% Similarity=0.348 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHHhC--ChhHHHHHHHHHHHHHHHHHhcHHHHHH
Q 010427 12 GSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAI--DLSVLGLLFGTMVVSFYLERAGMFKYLE 89 (511)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~--~~~~i~~l~g~~~i~~~l~~tG~~~~ia 89 (511)
++.+|+.++++++++.. +++...++++++.++.++|+++++|+++++ +|+++++++|+|+++++++|||++++++
T Consensus 2 ~l~i~~~~i~l~~~~~~---~i~~~~~al~~~~ll~~~gv~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia 78 (416)
T cd01118 2 AIAIFVLTLVLVIWRPF---GLPEAVWAVLGAVIALILGLVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVA 78 (416)
T ss_pred HHHHHHHHHHHHHHccC---CCChHHHHHHHHHHHHHHCCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 34556666666666421 234457799999999999999999999985 6999999999999999999999999999
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHhhccCcccccccc
Q 010427 90 IVLSWRSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSP---HPFLLALASSANVGSSATPIGNPQ 165 (511)
Q Consensus 90 ~~l~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p---~~~l~~~a~aan~Gg~~TpiG~p~ 165 (511)
+++.+..+ ++++++..++++++++|+|+||+++++++.|++.++|++.|.+| .+++++.++++|+||.+||+|||+
T Consensus 79 ~~l~~~~~~~~~~l~~~~~~~~~~ls~~~sn~a~~~~~~Pi~~~i~~~~g~~~~~~~~~l~~~~~~a~~g~~~tpig~~~ 158 (416)
T cd01118 79 ALAARWARGSGRKLFTLIVLLGAAVTAFFANDGTALILTPIVIALLRALGAKKNRTLPFLYACAFIADAASLPLPISNLV 158 (416)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHcccccccccCCch
Confidence 99887655 47889999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred hhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCC
Q 010427 166 NLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGN 245 (511)
Q Consensus 166 Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (511)
|+++++.++++|.||++.++|+.++++++...+.++++|+.++++.+. ++. + +
T Consensus 159 n~i~~~~~~i~~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------------~-~--- 211 (416)
T cd01118 159 NIVTAGYFGIGFTEYAALMFLPSIVSILATYVVLYLFFRRALPKRLET-------ASV----------------K-K--- 211 (416)
T ss_pred HHHhHhccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccc-------ccc----------------c-C---
Confidence 999988889999999999999999988776655555555444321000 000 0 0
Q ss_pred cccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHH--H
Q 010427 246 SKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVI--L 323 (511)
Q Consensus 246 ~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~ 323 (511)
++...+.|+........+.. .
T Consensus 212 ---------------------------------------------------------~~~~~~~~~~~~~~~~i~~~~~~ 234 (416)
T cd01118 212 ---------------------------------------------------------PSLAIKDPLLFGLAWTLLVLLVV 234 (416)
T ss_pred ---------------------------------------------------------ccccccchHHHHHHHHHHHHHHH
Confidence 00000011111111111111 1
Q ss_pred HHHHHHHhCCcHHHHH-HHHHHHHHHhccC---ChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcc
Q 010427 324 GMLIALLMGLNMSWTA-LTAALVLVVLDFK---DAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARIN 399 (511)
Q Consensus 324 ~~l~~~~~~l~~~~~a-l~~a~~l~~~~~~---~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~ 399 (511)
.++.....+.++.+.+ +.++.++++.+++ +.+|+++++||+++++|+|+|+++++++++|+.+++++.+.+..+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~w~~ll~f~g~f~l~~al~~tG~~~~l~~~l~~~~~~~ 314 (416)
T cd01118 235 SAFGVDILLIPPSFIAGVLALIFLLLARRGGAINPLKVLKEAPWGVLLFSLGLYVVVFGLKNAGLTAILADLLNWLVSQG 314 (416)
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCC
Confidence 1111112344444444 4555555555655 88899999999999999999999999999999999999987653321
Q ss_pred cchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccC
Q 010427 400 RVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSK 479 (511)
Q Consensus 400 ~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~ 479 (511)
.......+..++.++||++||+|++.++.|++.. +.++...|+.++++++.|||+||+||++|+++++..+++
T Consensus 315 ~~~~~~~~~~~~~vls~~isNvp~~~l~~p~~~~------~~~~~~~~~~l~~g~~~gg~~t~~gs~an~i~~~~~~~~- 387 (416)
T cd01118 315 LLAAILGVGLLAAFLSNVMNNLPAVLIGALALAA------GHAPEALVYANLIGVDLGPKLTPIGSLATLLWLHVLRRK- 387 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhc------ccccHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHC-
Confidence 1112234556889999999999999999995531 344555788899999999999999999999999988763
Q ss_pred CCCceeecchhhhhhhHHHHHHHHHHHHH
Q 010427 480 PSGYTLSFWTHLKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 480 ~ggy~i~f~df~k~G~plt~l~~iv~~~~ 508 (511)
|++++|+||+|+|+|+++++++++...
T Consensus 388 --~~~~~~~~f~k~g~~~~~~~l~~~~~~ 414 (416)
T cd01118 388 --GIRVSWGYYLKVGLIVTPPVLVVTLAA 414 (416)
T ss_pred --CCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445579999999999999999988654
No 6
>PLN00137 NHAD transporter family protein; Provisional
Probab=100.00 E-value=3.1e-49 Score=415.83 Aligned_cols=377 Identities=19% Similarity=0.256 Sum_probs=285.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCC---ChHHHHHhCC------hhHHHHHHHHHHHHHHH
Q 010427 9 VVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVI---TPEEAFAAID------LSVLGLLFGTMVVSFYL 79 (511)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~---~~~~a~~~~~------~~~i~~l~g~~~i~~~l 79 (511)
-..++++|.+++.+++++.. +.++|+.+++.++.++++++.+ +++++++.++ |+++++++|||++++++
T Consensus 5 ~~~~~~if~~~y~~i~~e~~--~~i~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~g~m~iv~~l 82 (424)
T PLN00137 5 GLAMALVFGAGYAGIIFEES--LAFNKSGVALLMAVSLWVIRAIGAPSLEIVTLELRHALAEVSEIVFFLLGAMTIVEIV 82 (424)
T ss_pred hhHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999733 4577899999999999888888 8888888899 99999999999999999
Q ss_pred HHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHH-HHHHHHHHhhccCc
Q 010427 80 ERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPF-LLALASSANVGSSA 158 (511)
Q Consensus 80 ~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~-l~~~a~aan~Gg~~ 158 (511)
+++|++++++.++.++ ++|++++.++++++++|+|+|||+|++++.|++.++|++. +|.++ ++.++++||+||+.
T Consensus 83 ~~~g~f~~~a~~~~~~--~~~~l~~~~~~~~~~lS~~l~N~tt~l~~~p~~~~~~~~~--~~~~~~~~~~~~aaNiGg~~ 158 (424)
T PLN00137 83 DAHQGFKLVTDSITTR--SPRTLLWVVGFITFFLSSILDNLTTTIVMVSLLRKLVPPS--EYRKLLGAVVVVAANAGGAW 158 (424)
T ss_pred HHcCcHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHhcccccee
Confidence 9999999999999876 8899999999999999999999999999999999999875 56666 67899999999999
Q ss_pred ccccccchhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccc
Q 010427 159 TPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINV 238 (511)
Q Consensus 159 TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (511)
||+|||||+++++.++++|.||+....|+.++++++...++.+++++..+ .+ . . .+
T Consensus 159 TpiGnp~NllI~~~~~lsf~~f~~~l~~P~li~~lv~~~i~~~~~~~~~~----~~------~-~-----~~-------- 214 (424)
T PLN00137 159 TPIGDVTTTMLWIHGQISTLPTMQGLFLPSAVSLAVPLALMSLTSEENGS----PQ------D-S-----SP-------- 214 (424)
T ss_pred ccCCCcCeeeehccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----hh------h-c-----cc--------
Confidence 99999999999998899999988777666666665543333322222111 00 0 0 00
Q ss_pred cccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHH
Q 010427 239 NDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCT 318 (511)
Q Consensus 239 l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (511)
. + +++..+.++...+...
T Consensus 215 ~--~------------------------------------------------------------~~~~~~~~~~l~~~l~ 232 (424)
T PLN00137 215 L--L------------------------------------------------------------ASEQMAPRGQLVFGVG 232 (424)
T ss_pred c--c------------------------------------------------------------hhhhcccHHHHHHHHH
Confidence 0 0 0000001121212222
Q ss_pred HH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHh-----------ccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHH
Q 010427 319 YL-VILGMLIALLMGLNMSWTALTAALVLVVL-----------DFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPS 386 (511)
Q Consensus 319 ~~-i~~~~l~~~~~~l~~~~~al~~a~~l~~~-----------~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~ 386 (511)
.+ +.+..+.....|+|+.+.++.++..+++. ++.+.+|+++++||++++||+|+|+++++++++|+.+
T Consensus 233 i~~~~~~~~~~~~~gl~~~~~al~~~~~lll~~~~~~~~~~~~~~~~~~~~l~~Vdw~tLlfF~GlFilvgal~~tG~~~ 312 (424)
T PLN00137 233 VGALLFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQALKVPQALSRIDTQGILFFLGILLSVGSLDAAGILR 312 (424)
T ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHhCCccHHHHHHHHHHHHHHHHHcCHHH
Confidence 11 11111233346799999998877655543 2356789999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhh
Q 010427 387 TLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSA 466 (511)
Q Consensus 387 ~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~ 466 (511)
.+++.+....+ . ...+..+++++||++||+|++++|.|++. ..+ .+. .+..|+.+++++|.|||+|++||.
T Consensus 313 ~la~~l~~~~~--~---~~~i~~~s~ilS~~IsNVP~~~~~~p~~~--~~~-~~~-~~~~w~aLalga~lGGn~tliGS~ 383 (424)
T PLN00137 313 ELANYLDANIP--N---VELIASAIGVASAIIDNVPLVAATMGMYD--LTD-YPM-DSELWQLIALCAGTGGSLLVIGSA 383 (424)
T ss_pred HHHHHHHHhcC--C---chhHHHHHHHHHHHhcchHHHHHHhhhhh--hcc-CCc-chHHHHHHHHHhCccchHHHHHHH
Confidence 99998754321 1 12356678899999999999999999654 111 111 235799999999999999999999
Q ss_pred hHHHHHhhhhccCCCCceeecchhhhh
Q 010427 467 ANLIVCEQARRSKPSGYTLSFWTHLKF 493 (511)
Q Consensus 467 aNliv~~~~~~~~~ggy~i~f~df~k~ 493 (511)
||+++++..+| +| ++.|.|+
T Consensus 384 Anvi~~~~~~~----~~---~~~~~~~ 403 (424)
T PLN00137 384 AGVAFMGMEKV----DF---FWYLRKV 403 (424)
T ss_pred HHHHHHHHhhh----hh---hhhhhhh
Confidence 99999987643 45 3545565
No 7
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=100.00 E-value=1.4e-48 Score=408.90 Aligned_cols=373 Identities=43% Similarity=0.615 Sum_probs=294.2
Q ss_pred cchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHH
Q 010427 32 PIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISA 111 (511)
Q Consensus 32 ~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~ 111 (511)
..+..+++++++.++.++|+++++|++++++|+++++++|+|+++.+++++|+++++++++.++.++++++++.++++++
T Consensus 10 ~~~~~~~a~~~~~ll~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~~~~~l~~~~~~~~~ 89 (384)
T cd01117 10 RLDRWAIALLGAALMLLFGVISLEDAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAGSPRRLLFLLVLLSG 89 (384)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCHHHHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999988776677888888999999
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHH
Q 010427 112 LSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVG 191 (511)
Q Consensus 112 ~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~ 191 (511)
++|++++|+++++++.|++..+|++.|.+|.++++++++++|+||..||+|||+|+++++..+++|.||++.++|..+++
T Consensus 90 ~ls~~~~n~~~~~~~~Pi~~~l~~~~~~~~~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~~~i~~~~~~~~~~p~~i~~ 169 (384)
T cd01117 90 ILSALLTNDTACLVFTPIVLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASESGISFPFFLAAMAPLALLG 169 (384)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHcccccccCCCchhhhhhcCCCCCHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccc
Q 010427 192 VFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNS 271 (511)
Q Consensus 192 l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~ 271 (511)
+++...+.+.++++...++.+. ++ .+ +
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~-------~~------~~-----------~----------------------------- 196 (384)
T cd01117 170 LLLLLILLLVLFPGELKGLPLD-------KA------TK-----------E----------------------------- 196 (384)
T ss_pred HHHHHHHHHHHHHHhhcccccc-------cc------cc-----------h-----------------------------
Confidence 7765444443333222100000 00 00 0
Q ss_pred hhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhc
Q 010427 272 VASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGL-NMSWTALTAALVLVVLD 350 (511)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l-~~~~~al~~a~~l~~~~ 350 (511)
..+..++.++ +....+++...+.....+. |..++++.++.+++..+
T Consensus 197 ------------------------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 243 (384)
T cd01117 197 ------------------------------EGVGARKLAV---KLLVLILLLLVAFLALLGVIPLWTAALVAAVLLLLTR 243 (384)
T ss_pred ------------------------------hhcccHHHHH---HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc
Confidence 0000011111 1111111111112222344 44556666667777777
Q ss_pred cCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 010427 351 FKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGAR 430 (511)
Q Consensus 351 ~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~ 430 (511)
.+.+|+++++||+++++|+|+|.++++++++|..+++++.+.. ......+..++.++||++||+|++.++.|+
T Consensus 244 -~~~~~~l~~i~w~~ll~f~g~f~l~~~l~~~g~~~~~~~~~~~------~~~~~~~~~~~~~lS~~isN~p~~~~~~pi 316 (384)
T cd01117 244 -LKPRRVLKKVDWGLLLFFAGLFILVGGFAQGLPLEGLSRLLPL------LDSVLSLFLVSIGLSQLISNVPAVLLLLPF 316 (384)
T ss_pred -CCHHHHHHhCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8889999999999999999999999999999999988887643 123345677899999999999999999995
Q ss_pred HHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHHH
Q 010427 431 VAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 431 i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~ 508 (511)
.. .. ++ ..|+.++++++.|||+||+||++|+++++..|+ +|++++|+||+|+|+|.+++.+++++.+
T Consensus 317 ~~-~~------~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~---~g~~~~~~~~~k~g~~~~i~~~~~~~~~ 383 (384)
T cd01117 317 LP-SA------DE-KDWLLLAAGSTIAGNLTLLGSAANLIVAEAAER---RGVRLSFGEFLKYGVPLTLLTAAIGILW 383 (384)
T ss_pred HH-hc------cc-HHHHHHHHHhhcccccchhhHHHHHHHHHHHHH---CCCCCcHHHHHHHhhHHHHHHHHHHHHh
Confidence 42 21 23 468899999999999999999999999999887 3667899999999999999998877653
No 8
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=100.00 E-value=2e-48 Score=413.59 Aligned_cols=405 Identities=21% Similarity=0.302 Sum_probs=301.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHH--HhCChhHHHHHHHHHHHHHHHHHhcHHHHH
Q 010427 11 LGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAF--AAIDLSVLGLLFGTMVVSFYLERAGMFKYL 88 (511)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~--~~~~~~~i~~l~g~~~i~~~l~~tG~~~~i 88 (511)
.++.+|+.+++++++++. |.+.++.++.++.++.++|+++++|+. .+++|+++++++|+|+++++++|+|+++++
T Consensus 3 ~~l~i~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~l~g~~~~~~~~~~~~~~~~~l~~~~g~~ii~~~l~~tGl~~~i 79 (429)
T TIGR00935 3 LAGAIFLLTYVLVIWQPV---GLTIGASASSGAALAILAGVVSRPDIPTVWGIVWNATATFFAVIIISLILDETGFFEWA 79 (429)
T ss_pred HHHHHHHHHHHHHHheec---chHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhchhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 456677777888886543 455556677777888889999999874 359999999999999999999999999999
Q ss_pred HHHHHHhcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchh
Q 010427 89 EIVLSWRSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNL 167 (511)
Q Consensus 89 a~~l~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nl 167 (511)
++++.++.+ +++++++.+++.++++|+|+||+++++++.|++.++|++.|.+|+++++++++++|+||..||+|+|+|+
T Consensus 80 a~~l~~~~~~~~~~l~~~~~~~~~~ls~~~~n~~~~~i~~Pi~~~l~~~~~~~~~~~~~~~~~~a~~gg~~t~iG~~~n~ 159 (429)
T TIGR00935 80 AVHAYRLSNGRGWLLFTFICLLGAVVSAFFANDGAALILTPIVIAMCEVLGFNPRTILAFVVAAGFIADTASLPLIVSNL 159 (429)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHHHHhCCCCcchHHHHHHHHHHhhHHhcCCCCchh
Confidence 999987765 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccC---CCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccC
Q 010427 168 VIALQ---SGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCG 244 (511)
Q Consensus 168 iv~~~---~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (511)
+..+. .+++|.||++.++|+.++++++...++.+.+|+.++++.+. ++ .. +
T Consensus 160 i~~~~~~~~~i~f~~f~~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~------~~-----------------~~-~-- 213 (429)
T TIGR00935 160 VNIVSADYFGLGFAEYTSHMLPGNILVLVATLLVLRLYFRNDIPKVYDL------EL-----------------LL-A-- 213 (429)
T ss_pred hhhhcccccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCcccch------hh-----------------cc-C--
Confidence 98653 37999999999999999887765443333333222110000 00 00 0
Q ss_pred CcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHH--H
Q 010427 245 NSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLV--I 322 (511)
Q Consensus 245 ~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~ 322 (511)
++...+.++..++....++ +
T Consensus 214 ----------------------------------------------------------~~~~~~~~~~~~~~~~v~~~~i 235 (429)
T TIGR00935 214 ----------------------------------------------------------PKYAIKDPALFKKCWIVLVFLL 235 (429)
T ss_pred ----------------------------------------------------------ccccccCHHHHHHHHHHHHHHH
Confidence 0000001111122222211 1
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH----HhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhc
Q 010427 323 LGMLIALLMGLNMSWTALTAALVLV----VLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARI 398 (511)
Q Consensus 323 ~~~l~~~~~~l~~~~~al~~a~~l~----~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~ 398 (511)
+........+++....+..+++..+ ..++.|.||+.+++||+++++++|+|++++++++||+.+++++.+....+.
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~f~l~~~l~~tG~~~~la~~~~~~~~~ 315 (429)
T TIGR00935 236 VGFFVLEFLGIPVSAIAWIAALGAIALAILADAIDTEKVLRGAPWQIVLFSAGMYLVVEGLKNLGLTEYLGGILNVLEDR 315 (429)
T ss_pred HHHHHhccccCchHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhcC
Confidence 1122222245566655555554322 246788899999999999999999999999999999999999955333221
Q ss_pred ccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcc--ccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhh
Q 010427 399 NRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGA--ISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQAR 476 (511)
Q Consensus 399 ~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~--~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~ 476 (511)
+.......+..++.++||++||+| .+.|++ ..+++ ..+.+|...++.++++++.|||+||+||++|+++++..|
T Consensus 316 ~~~~~~~~~~~~~~~ls~~~sN~~---~~~pi~-~~i~~~~~~g~~~~~~~~~l~~~~~~gg~~tp~gs~anli~~~~~~ 391 (429)
T TIGR00935 316 GLWAAILGTGFVSAFLSSIMNNMP---TMLVGA-LSIDQSSATGLPKEPMVYANVIGADLGPKITPIGSLATLLWLHVLE 391 (429)
T ss_pred CHHHHHHHHHHHHHHHHHHHccHH---HHHHHH-HHHhhccccccchhHHHHHHHHHHhcCcccCccccHHHHHHHHHHH
Confidence 111122334568889999999999 367844 33332 235666666778888899999999999999999998776
Q ss_pred ccCCCCceeecchhhhhhhHHHHHHHHHHHHHh
Q 010427 477 RSKPSGYTLSFWTHLKFGLPSTIVITAIGLALI 509 (511)
Q Consensus 477 ~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~i 509 (511)
+ +||+++|+||+|+|+|.+++.++++..++
T Consensus 392 ~---~g~~~~~~df~k~g~~~~~~~~~i~~~~l 421 (429)
T TIGR00935 392 Q---KGYKISWGYYFRTGIPMTIPVLFVTLAYL 421 (429)
T ss_pred H---CCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 68888999999999999999999887654
No 9
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=100.00 E-value=7.9e-49 Score=412.64 Aligned_cols=358 Identities=19% Similarity=0.247 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHH---H---HhCC-hhHHHHHHHHHHHHHHHHHhcH
Q 010427 12 GSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEA---F---AAID-LSVLGLLFGTMVVSFYLERAGM 84 (511)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a---~---~~~~-~~~i~~l~g~~~i~~~l~~tG~ 84 (511)
-+.+|.+++.+++++.. +.++|+.++++++.+++++|..+.+|+ + +..| |+++++++|||++++.++++|+
T Consensus 6 ~~~if~~~y~~i~~e~~--~~~~r~~~al~ga~~~~~~~~~~~~~~~~~~~~~~~~d~~~ti~~LfgmMiiv~~l~~~g~ 83 (420)
T TIGR00775 6 LCLLFLFGYLTIVFEHI--VRVNKSAIWLAMGGLMWLVCFSHIPDVDHAALEEEIADMAQVIFFLFVAMAIVELIDAHKG 83 (420)
T ss_pred HHHHHHHHHHHHHhcch--hhhccHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCCc
Confidence 35677889999998733 456799999999999999999998887 5 5678 9999999999999999999999
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHH--HHHHHhhccCccccc
Q 010427 85 FKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLA--LASSANVGSSATPIG 162 (511)
Q Consensus 85 ~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~--~a~aan~Gg~~TpiG 162 (511)
+++++.++.++++ |++++.++++++++|+|+|||+|++++.|+++++|+ .+|.|++++ ++++||+||++||+|
T Consensus 84 f~~la~~l~~~s~--r~Ll~~l~l~t~~lSa~LdN~tt~ll~~Pv~l~i~~---~~~~~~ll~~~i~~AANiGG~~TpIG 158 (420)
T TIGR00775 84 FSALVAWCVGKSR--KKLLWLLGFLSFFLSAALDNLTSIIIIISILKRLVK---AREDRLLLGAICVIAVNAGGAWTPLG 158 (420)
T ss_pred HHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc---cCCccchHHhHHHHhcccccceeeCC
Confidence 9999998776544 899999999999999999999999999999999996 788889898 899999999999999
Q ss_pred ccchhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccc
Q 010427 163 NPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSK 242 (511)
Q Consensus 163 ~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (511)
||||+++++.++++|.||+....|++++++++...++.+.+++..|.+. +++. +
T Consensus 159 dP~Ni~i~~~~~i~f~~f~~~l~~p~li~l~v~~~il~~~~~~~~~~~~--------~~~~----------------~-- 212 (420)
T TIGR00775 159 DVTTTMLWINGKIRFSGIIMPLFVPSLVCVVVAGFCGQLFLPKRKPNTI--------HEDV----------------E-- 212 (420)
T ss_pred CcchhHhHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--------cccc----------------c--
Confidence 9999999998899999888887777777765544333332322111000 0000 0
Q ss_pred cCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHH
Q 010427 243 CGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVI 322 (511)
Q Consensus 243 ~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 322 (511)
.++..++.++.+. .....++
T Consensus 213 -----------------------------------------------------------~~~~~~~~~~~l~-l~~~~~l 232 (420)
T TIGR00775 213 -----------------------------------------------------------LKRALPKSRRIVL-LGVGSLL 232 (420)
T ss_pred -----------------------------------------------------------cccchhhhHHHHH-HHHHHHH
Confidence 0000001122221 1111122
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHhc------------cCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHH
Q 010427 323 LGMLIALLMGLNMSWTALTAALVLVVLD------------FKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWT 390 (511)
Q Consensus 323 ~~~l~~~~~~l~~~~~al~~a~~l~~~~------------~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~ 390 (511)
..+......++|+.++++.++..+.+.+ .++.+|.++++||++++||+|+|+++++++++|+.+.+++
T Consensus 233 ~~f~~~~~~~l~~~~~al~~~~~lll~~~~l~~~~~~~~~~~~~~~~l~~VDw~tLlfF~GlFilvg~l~~~G~l~~la~ 312 (420)
T TIGR00775 233 MVPSWKAVLGFPPFMGALLGLGLVWLFSDWIHSPHGEKRLHLRVPHILTRIDISSLTFFIGILLAVNALSLLGYLEDVSN 312 (420)
T ss_pred HHHHHHhhcCccHHHHHHHHHHHHHHHHHHhhccccccccccCHHHHHHhCCccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2233334468999999999887766643 3456899999999999999999999999999999999999
Q ss_pred HhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHH
Q 010427 391 LMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLI 470 (511)
Q Consensus 391 ~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNli 470 (511)
.+....+ . . ...+++.++||++||+|.++.+.|.... +. .+..|+.++++++.|||+|++||.||++
T Consensus 313 ~l~~~~~--~-~---~~~~~s~i~S~~IdNVP~va~~i~l~~~------~~-~~~~w~aLalga~lGGn~tlIGS~Anvv 379 (420)
T TIGR00775 313 VMDTQFS--R-N---WAAVMVGLLSSVLDNVPLVAATLGMYPL------PM-SDGLWKLIAYTAGTGGSILIIGSAAGVA 379 (420)
T ss_pred HHHHhcC--c-c---hHHHHHHHHHHHhccHHHHHHHHHhccc------cC-chHHHHHHHHHHCccchhHHHHHHHHHH
Confidence 8754322 1 1 1245567899999999999999995321 11 2357999999999999999999999999
Q ss_pred HHhhh
Q 010427 471 VCEQA 475 (511)
Q Consensus 471 v~~~~ 475 (511)
+++..
T Consensus 380 ~~~~~ 384 (420)
T TIGR00775 380 LMGAE 384 (420)
T ss_pred HHHHH
Confidence 88864
No 10
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=100.00 E-value=3.9e-48 Score=404.07 Aligned_cols=404 Identities=28% Similarity=0.389 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHHh--CChhHHHHHHHHHHHHHHHHHhcHHHHHH
Q 010427 12 GSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAA--IDLSVLGLLFGTMVVSFYLERAGMFKYLE 89 (511)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~--~~~~~i~~l~g~~~i~~~l~~tG~~~~ia 89 (511)
+.++|+.+..++++. +..+|+. +.+..|+.+++.+|.++++|+.+. ..|+..+++.||++++..++++|+|||+|
T Consensus 2 a~~if~~tl~~vi~r-P~~l~~~--~~A~~GA~l~l~~G~v~~~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A 78 (423)
T PF02040_consen 2 AIAIFLLTLLLVIWR-PRGLPEA--VWAVLGAALALALGVVPLSDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLA 78 (423)
T ss_pred hHHHHHHHHHHHhcc-CCCCChH--HHHHHHHHHHHHhCCcCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 567888888887764 5556664 779999999999999999998875 57999999999999999999999999999
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHhhccCcccccccc
Q 010427 90 IVLSWRSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSP---HPFLLALASSANVGSSATPIGNPQ 165 (511)
Q Consensus 90 ~~l~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p---~~~l~~~a~aan~Gg~~TpiG~p~ 165 (511)
.++.++++ +.++++..+..++++.|+|+|||+|+++++|+++.++++.|++| .|+++.+++.||.+|...|++||+
T Consensus 79 ~~~a~~a~g~~~rLf~~v~ll~~~vTaflsND~talilTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~LpvSNlt 158 (423)
T PF02040_consen 79 LHAARWARGSGRRLFLLVYLLGAVVTAFLSNDATALILTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLPVSNLT 158 (423)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccccccCcH
Confidence 99988876 47889999999999999999999999999999999999999986 599999999999999999999999
Q ss_pred hhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCC
Q 010427 166 NLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGN 245 (511)
Q Consensus 166 Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (511)
|++..+..+++|.+|...+.++.+++++++..+++++|||.+|++-+.+ +.+ +| +
T Consensus 159 NLv~~~~~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~fr~~l~~~~~~~-------~~~----~p---~----------- 213 (423)
T PF02040_consen 159 NLVAADAFGISFLEYAAVMALPSLAAIAVTYLVLWLYFRRDLPKRYDLS-------ELP----PP---K----------- 213 (423)
T ss_pred HHHHHHccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh-------ccc----Cc---c-----------
Confidence 9999999999999999999999999999988888888998887432210 000 00 0
Q ss_pred cccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHH--HHHHH
Q 010427 246 SKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCT--YLVIL 323 (511)
Q Consensus 246 ~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~ 323 (511)
+..++++..+.... .+.+.
T Consensus 214 -----------------------------------------------------------~~i~d~~~~~~~~~vl~~ll~ 234 (423)
T PF02040_consen 214 -----------------------------------------------------------SAIKDPRLFRLSLVVLALLLA 234 (423)
T ss_pred -----------------------------------------------------------ccccchhHHHHHHHHHHHHHH
Confidence 00011122212211 11222
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHhc----cCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcc
Q 010427 324 GMLIALLMGLNMSWTALTAALVLVVLD----FKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARIN 399 (511)
Q Consensus 324 ~~l~~~~~~l~~~~~al~~a~~l~~~~----~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~ 399 (511)
+.......|+|.++++..++++++... ..+.++..++++|+++.|..|||+++.+++++|+.+.+++.+....+.+
T Consensus 235 ~~~~~~~~~ip~~~va~~~a~ill~~~~r~~~~~~~~~l~~~pW~il~F~~gLfvvV~~L~~~Gl~~~l~~~l~~~~~~~ 314 (423)
T PF02040_consen 235 GFFVASFLGIPVSAVAGAGAVILLALARRSRKISPKRVLREVPWSILPFVLGLFVVVEGLENTGLTELLARLLGTAASQG 314 (423)
T ss_pred HHHhccccCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHhCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCC
Confidence 333334467898888888777765543 2345688999999999999999999999999999999999987654433
Q ss_pred cchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccC
Q 010427 400 RVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSK 479 (511)
Q Consensus 400 ~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~ 479 (511)
.....+..+.+++++||++||.|+.+++.+.+. .++..+...+...+....|++.|+|+||+||.||++|.+.+||
T Consensus 315 ~~~a~~~~g~~~A~lsnl~NNLPa~Li~~~ai~--~~~~~~~~~~~~~~A~lIG~nlGp~lTp~GSLATLLWl~~L~~-- 390 (423)
T PF02040_consen 315 LLAAILGMGFLSAILSNLMNNLPAVLIGALAIQ--AAHAPGLVREALIYALLIGVNLGPNLTPIGSLATLLWLHILRR-- 390 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhh--cccCCchhHHHHHHHHHHhcccCcccchHHhHHHHHHHHHHHH--
Confidence 333455667788999999999999887766332 2221121122346678899999999999999999999999988
Q ss_pred CCCceeecchhhhhhhHHHHHHHHHHHH
Q 010427 480 PSGYTLSFWTHLKFGLPSTIVITAIGLA 507 (511)
Q Consensus 480 ~ggy~i~f~df~k~G~plt~l~~iv~~~ 507 (511)
+|++++|++|+|+|+++++.++++++.
T Consensus 391 -~Gi~is~~~f~k~G~vlt~p~Ll~al~ 417 (423)
T PF02040_consen 391 -KGIKISWGEFLKLGLVLTPPVLLAALL 417 (423)
T ss_pred -CCCCCCHHHHHHHhHHHHHHHHHHHHH
Confidence 589999999999999988887776654
No 11
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=100.00 E-value=1.2e-47 Score=402.43 Aligned_cols=366 Identities=19% Similarity=0.223 Sum_probs=276.2
Q ss_pred HHhcCCChHHHHHhC--ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHH
Q 010427 47 IIFKVITPEEAFAAI--DLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCV 124 (511)
Q Consensus 47 ~~~g~~~~~~a~~~~--~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~ 124 (511)
+++|+++++|+++++ |+++++++++| ++++++++|++++++.++.++.++++++++.++++++++|+|+||+++++
T Consensus 76 v~~Gv~s~~~a~~~f~~n~~vIlLL~fM--Vv~i~~~~gll~~v~~kil~~~~s~~~Lll~~~l~aA~LSAFLdN~Tvva 153 (513)
T PRK09547 76 VFIGMTSPEHVYHEIAANLEVLLLLMFM--VAGIYFMKQLLLFIFTKLLLSIRSKMLLSLAFCLAAAFLSAFLDALTVIA 153 (513)
T ss_pred HHHCCCCHHHHHHHhccCHHHHHHHHHH--HHHHHHHccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 788999999999995 66777776544 99999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHH-------------------HHHHcCCC---------ch----HHHHHHHHHHhhccCcccccccchhhhccC
Q 010427 125 ILTEFVLK-------------------IARQNGVS---------PH----PFLLALASSANVGSSATPIGNPQNLVIALQ 172 (511)
Q Consensus 125 i~~Pi~~~-------------------ia~~~~~~---------p~----~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~ 172 (511)
+++|+++. +|++.+++ |. .++||.++++|+||.+|++|+|||+++.+.
T Consensus 154 v~iPV~l~~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~p~pfL~~Llmpla~asnlGGv~TLIG~PqNLiIas~ 233 (513)
T PRK09547 154 VVISVAVGFYGIYHRVASGKGFSEDHDLTDDSHIDELYREDLEQFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQ 233 (513)
T ss_pred hHHHHHHHHhhhhHHHHhccccccccccccccccchhhhhhhcccchHHHHHHHHHHHHHHhhhheeccCCcHHHHHHHh
Confidence 99999994 45556676 34 566667779999999999999999999987
Q ss_pred CCccHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCC
Q 010427 173 SGISFGKFLLGILPSMLVGVFVNTLILLC-------MYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGN 245 (511)
Q Consensus 173 ~~~~f~~f~~~~lp~~ii~l~~~~~~~~~-------~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (511)
.|++|.||+....|+.+..++....+..+ .|++.+|++.++ . +.
T Consensus 234 ~g~~F~~F~~~~apv~lpvli~gll~~~l~~~~~~f~y~~~l~~~~~~---------------------~---l~----- 284 (513)
T PRK09547 234 AGWHFGEFFLRMAPVTVPVLICGLLTCLLVEKFRWFGYGAKLPEKVRQ---------------------V---LQ----- 284 (513)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEeeccccchhHHH---------------------H---hh-----
Confidence 78999999766666555444333322211 111111100000 0 00
Q ss_pred cccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHH-HHHHHHHHHHH
Q 010427 246 SKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVS-WKTCTYLVILG 324 (511)
Q Consensus 246 ~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 324 (511)
+.+++ .++++..++|+.+ .+++..+.
T Consensus 285 ----------------------------------~~~~~----------------~~~~~~~~d~~~L~~~~l~~~~--- 311 (513)
T PRK09547 285 ----------------------------------DYDDQ----------------ERAKRTRQDKAKLIVQALIGVW--- 311 (513)
T ss_pred ----------------------------------hhhhc----------------cCcccccccHHHHHHHHHHHHH---
Confidence 00000 0001112223333 44443222
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHhc---cCChHHHHhh-----cChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhh
Q 010427 325 MLIALLMGLNMSWTALTAALVLVVLD---FKDAMPCLDK-----VSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHA 396 (511)
Q Consensus 325 ~l~~~~~~l~~~~~al~~a~~l~~~~---~~~~~~~~~~-----idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~ 396 (511)
.+++.. ++++++++.|+.++++.+ .++.+|.+++ +||+++ |+|+|+++++++++|+.+.+++.+....
T Consensus 312 li~~f~--l~~a~VaLiga~vill~~~~~~~~~e~~l~~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~~~~~~~~ 387 (513)
T PRK09547 312 LIVALA--LHLAEVGLIGLSVIILATAFTGVTDEHAIGKAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPIIQFVLQAS 387 (513)
T ss_pred HHHHHH--HhHHHHHHHHHHHHHHhhcccCCCHHHHHhhCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 233332 789999999998777765 5778999999 999999 9999999999999999999999997765
Q ss_pred hcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCc-c---hhHHHHHHHHHHhhhcChhhhhhhhHHHHH
Q 010427 397 RINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISES-E---EKKAWLILAWVSTVAGNLSLLGSAANLIVC 472 (511)
Q Consensus 397 ~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~-~---~~~~~~~l~~~~~~gg~lTpiGs~aNliv~ 472 (511)
+.+ ...++.+.++++|+++||+|.++.|.|.+.... ..|. + .+..||.+..++|.|||+||+|+.||+++.
T Consensus 388 ~~~---~~~~~~~~sgllSaiiDNVp~~~~~ip~v~~~~--~~g~~~~~~~~~L~~ALa~Ga~Lggn~T~iGasAnlv~~ 462 (513)
T PRK09547 388 EHA---QLSLFYIANGLLSSISDNVFVGTVYINEAKAAL--ESGAISRKQFELLAVAINTGTNLPSVATPNGQAAFLFLL 462 (513)
T ss_pred CCC---hHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH--hcCCCccccchHHHHHHHHhcccchhhhHHHHHHHHHHH
Confidence 422 255677889999999999999999999765433 2233 1 245799999999999999999999999999
Q ss_pred -hhhhccCCCCceeecchhhhhhhHHHHHHHHHHHHHh
Q 010427 473 -EQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALI 509 (511)
Q Consensus 473 -~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~i 509 (511)
+.++ | |||++|+||+|+|+|.|++.++++..++
T Consensus 463 ~~~~~---~-g~~isf~~~~k~glP~tlv~~~v~~~~v 496 (513)
T PRK09547 463 TSALA---P-LIRLSYGRMVWMALPYTIVLTLVGLLAV 496 (513)
T ss_pred HHHHh---C-CCcccHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7764 4 9999999999999999999999987764
No 12
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=100.00 E-value=3.9e-45 Score=386.55 Aligned_cols=400 Identities=28% Similarity=0.468 Sum_probs=309.9
Q ss_pred HHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCC----hHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 010427 17 VIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVIT----PEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVL 92 (511)
Q Consensus 17 ~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~----~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l 92 (511)
+.+++++++++ +|.+ +++++++.+++++|+.+ ++|++++++|+++++++|++.++.+++++|+.+++++++
T Consensus 2 ~~~~~~~~~~~---~p~~--~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~tG~~~~la~~~ 76 (413)
T cd01116 2 IITYALIIFEK---VHRT--VAALAGALWLVILGLATLSPDLETIVSWVDWETLALLLGMMIIVSILSETGVFEYLAIWA 76 (413)
T ss_pred hHHHHHHHHcc---ccHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 34556666543 3554 66899999999999999 999999999999999999999999999999999999998
Q ss_pred HHhcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc
Q 010427 93 SWRSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL 171 (511)
Q Consensus 93 ~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~ 171 (511)
.++.+ +++++++.++.+++++|+|.+|+++++++.|++..+|++.|.+|..+++.+.+++|+||..||+|+|+|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ls~~~s~~~~~~i~~pi~~~i~~~~g~~~~~~~~~~~~~a~~g~~~tp~g~~~n~~~~~ 156 (413)
T cd01116 77 VKISKGRPWRLLLLLGLLTAFLSAFLDNVTTVLLMVPVTIRLCEVLGLNPVPVLISEVIAANIGGAATLIGDPPNIMIGS 156 (413)
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHccchhhccCCchhhhhhc
Confidence 87654 56778888899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccc
Q 010427 172 QSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRS 251 (511)
Q Consensus 172 ~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~ 251 (511)
..+++|.||++.++|..++++++..+...+.+++..+ +.+ ++ +++ .+ +
T Consensus 157 ~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~---~~~------~~--~~~-----------~~-~--------- 204 (413)
T cd01116 157 AAGLTFNDFLLHMLPSVVLALVVTFILLYFLYRNILK---ARE------ED--VLA-----------LA-E--------- 204 (413)
T ss_pred cCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc---ccc------hh--HHH-----------hh-c---------
Confidence 8889999999999999888776644333333322211 000 00 000 00 0
Q ss_pred cccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHHHHHHHHHH-
Q 010427 252 LSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALL- 330 (511)
Q Consensus 252 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~- 330 (511)
.+ +.+..++++....... +++..+....
T Consensus 205 ------------------------------------------------~~-~~~~~~~~~~~~~~~~--i~~~~v~~~~~ 233 (413)
T cd01116 205 ------------------------------------------------LE-PKYPIKDKVLLLKSLT--ILTLVIIGFVL 233 (413)
T ss_pred ------------------------------------------------cc-cccccCcHHHHHHHHH--HHHHHHHHHHh
Confidence 00 0000001111111211 1122222222
Q ss_pred ---hCCcHHHHHHHHHHHHHHhccC-ChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHH
Q 010427 331 ---MGLNMSWTALTAALVLVVLDFK-DAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISI 406 (511)
Q Consensus 331 ---~~l~~~~~al~~a~~l~~~~~~-~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~ 406 (511)
.+++.++++++++.+++..+.. +.+|+++++||+++++++|+++++.+++++|..|++++.+.+..+.+.......
T Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~ 313 (413)
T cd01116 234 HSPLGVSLGWIALLGALLLLLLADKLDFEDVLSRVEWDTLLFFAGLFVLVGGLEELGIIEWIAELLVGVILGRIAVAVIL 313 (413)
T ss_pred ccccCCCHHHHHHHHHHHHHHHcCCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHH
Confidence 2456888999999888888876 899999999999999999999999999999999999999877654322222334
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceee
Q 010427 407 LAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLS 486 (511)
Q Consensus 407 l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~ 486 (511)
+..++.++|+++||+|++.++.|+ ....++..+.+|...++..+++++.||++||+|+++|+++++..++ +|++++
T Consensus 314 ~~~~~~~~s~f~sn~~~~~~~~pi-~~~~~~~~~~~~~~~~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~~---~g~~~~ 389 (413)
T cd01116 314 ILWISALLSAFIDNIPVTATMIPI-VKDLASQLGIPLLPLWWALALGACLGGNGTLIGASANVVAAGIAEQ---HGYKIS 389 (413)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHH-HHHHHHhcCCCchHHHHHHHHHHhcccccccccchHHHHHHHHHHH---cCCCcc
Confidence 556888999999999999999994 4666766777776667778888899999999999999999987654 345578
Q ss_pred cchhhhhhhHHHHHHHHHHHHH
Q 010427 487 FWTHLKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 487 f~df~k~G~plt~l~~iv~~~~ 508 (511)
|+||+|+|.|.+++.+++++..
T Consensus 390 ~~~~~~~g~~~~i~~~~~~~~~ 411 (413)
T cd01116 390 FWEFLKVGFPIMLVSLILATVY 411 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877654
No 13
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=100.00 E-value=4.5e-42 Score=366.52 Aligned_cols=403 Identities=20% Similarity=0.205 Sum_probs=298.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHH-HHHHHHhcCCC---hHHHHHhCChhHHHHHHHHHHHHHHHHHhc
Q 010427 8 NVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLG-AMLMIIFKVIT---PEEAFAAIDLSVLGLLFGTMVVSFYLERAG 83 (511)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~-~~~l~~~g~~~---~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG 83 (511)
+..+.+.+|+.++++++++ .+|. .++++++ +.++.++|+++ ++|++++++|+++++++|+|+++.+++++|
T Consensus 9 ~~~~~l~i~~~~i~~w~~~---~~~~--~~~a~~~~~~~l~l~g~~~~~~~~~~~~~~~~~~v~l~~~~~~i~~al~~tG 83 (444)
T TIGR00785 9 GAWLLLAIFVAAIVGWILE---PLPL--PVTALLAIPIIAVLLGVLSAFKFKNALSGFADPTIWLFFGAFILATALVKTG 83 (444)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCcH--HHHHHHHHHHHHHHhccCCcchHHHHHHhcCCcHHHHHHHHHHHHHHHHHcC
Confidence 3344455555555555553 2344 4678886 88889999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC-c-hhHHHHHHHHHHHHHhhcchhh-HHHHHHHHHHHHHHHcCCCc--------hHHHHHHHHHH
Q 010427 84 MFKYLEIVLSWRSRG-A-KDLLCRICFISALSSALFTNDT-CCVILTEFVLKIARQNGVSP--------HPFLLALASSA 152 (511)
Q Consensus 84 ~~~~ia~~l~~~~~~-~-~~ll~~~~~~~~~lS~flsN~~-t~~i~~Pi~~~ia~~~~~~p--------~~~l~~~a~aa 152 (511)
+.+|+++++.++.++ + +..+..++..+.+.|.|.||++ +++++.|++.++|++.|.+| ..+++++.+++
T Consensus 84 l~~~ia~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~sn~ar~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~l~~~~~~~a 163 (444)
T TIGR00785 84 LGKRIAYKLVGKMGGTTLGLGYFLVFLETLLAPMWPSNTARAGGILLPIIKSLLPLLGSKPEKSPRKIGKYLMLGIAYSA 163 (444)
T ss_pred chHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhCchHhHhHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHH
Confidence 999999999877554 4 4455567777888899999999 99999999999999999998 45778999999
Q ss_pred hhccCcccccccchhhhccCC------CccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCC
Q 010427 153 NVGSSATPIGNPQNLVIALQS------GISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPH 226 (511)
Q Consensus 153 n~Gg~~TpiG~p~Nliv~~~~------~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~ 226 (511)
|+||+.||+|+|+|+++.+.. +++|.||++.+.|..++++++...+.++++++..+++++.
T Consensus 164 ~~g~~~t~~g~~~n~i~~~~~~~~~g~~i~~~~~~~~~~p~~ii~~~~~~~~~~~~~~~~~~~~~~~------------- 230 (444)
T TIGR00785 164 SIGSSGFLTGSAPNALAAGILSKILGIQISWGDWFLAGLPLGIILLLLVPLLLYVLFPPELKLKDEV------------- 230 (444)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHHcCccccCCccH-------------
Confidence 999999999999999987532 3899999999999888777664443333222111000000
Q ss_pred cCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcc
Q 010427 227 CFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQK 306 (511)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
+ . ...++.++ .++
T Consensus 231 ---~---~-----------------------------------------~~~~~~~~------------------~~~-- 243 (444)
T TIGR00785 231 ---D---L-----------------------------------------WAKEELEE------------------MGP-- 243 (444)
T ss_pred ---H---H-----------------------------------------HHHHHHHH------------------cCC--
Confidence 0 0 00000000 000
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHHhccCChHHHHhh-cChhHHHHHHHHHHHHHHHHh
Q 010427 307 WDWKRVSWKTCTYLVILGMLIALL----MGLNMSWTALTAALVLVVLDFKDAMPCLDK-VSYSLLIFFCGMFITVEGFNK 381 (511)
Q Consensus 307 ~~~~~~~~~~~~~~i~~~~l~~~~----~~l~~~~~al~~a~~l~~~~~~~~~~~~~~-idw~~ll~f~glf~l~~al~~ 381 (511)
..++++ +.+ .+++..++... .+++.+++++.++.++++.+..+.||..++ +||+++++++|.+.++.++++
T Consensus 244 ~~~~e~--~~l--~v~~~~i~~~~~~~~~~~~~~~~al~~~~ll~~~g~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~ 319 (444)
T TIGR00785 244 MSFREK--ALL--GIFLLALLLWIFGGSLGINASVVALLAVVLMLFLGIVTWKDIQKNKVAWNTLILFGGLIGLAGGLKK 319 (444)
T ss_pred CCHHHH--HHH--HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHhCcccHHHHhhccCCcHHHHHHHHHHHHHHHHHH
Confidence 001111 111 11222222222 357899999999998888999999998886 999999999999999999999
Q ss_pred hChHHHHHHHhhhhhhcccchhH--HHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcC
Q 010427 382 TGIPSTLWTLMEPHARINRVGGI--SILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGN 459 (511)
Q Consensus 382 tG~~~~ia~~l~~~~~~~~~~~~--~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~ 459 (511)
+|+.+++++.+.+..+..+.... .++.+.+.++++++||++++.++.|++ ..+++..|.+|...++..+++++.+++
T Consensus 320 sG~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~i~~Pi~-~~ia~~~G~~p~~~~~~~~~~~~~~~~ 398 (444)
T TIGR00785 320 SGFIKWFSEKLVGILDGLSPTIAVLVLVVLFYIILYFFASNTAHTAALVPIF-FSVASAQGIPLELLALALALSASLMGF 398 (444)
T ss_pred cCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998766421111111 234567788999999999999999954 556666788886556666777778889
Q ss_pred hhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHHH
Q 010427 460 LSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 460 lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~ 508 (511)
+||+|+++|.++++. |++ +++||+|.|+|++++.+++..++
T Consensus 399 ~tP~~s~~n~i~~~~------g~~--~~~~~~k~~~p~~l~~~~~~~~~ 439 (444)
T TIGR00785 399 LTPYATPPNAIAYGS------GYV--KIKDMWRVGAIIGIVGLIVLLLV 439 (444)
T ss_pred hcCCCCCccceeecC------CCc--cHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999998763 344 69999999999999988766553
No 14
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=100.00 E-value=1.7e-40 Score=348.88 Aligned_cols=386 Identities=36% Similarity=0.530 Sum_probs=290.8
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHH
Q 010427 29 PFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICF 108 (511)
Q Consensus 29 ~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~ 108 (511)
+.+|. ..+++.++.++.++|+.+++|++++++|+++++++|+++++++++++|+.+++++++.+..++.+..++.++.
T Consensus 7 ~~~~~--~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~~~~~~~~~ 84 (396)
T cd00625 7 EKLPR--AVVALLGAVLLVLLGVVSPKEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSRRLLLLLML 84 (396)
T ss_pred CcCCH--HHHHHHHHHHHHHhcCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 44445 4778999999999999999999999999999999999999999999999999999987665543333667788
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHH
Q 010427 109 ISALSSALFTNDTCCVILTEFVLKIARQNGVSP-HPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPS 187 (511)
Q Consensus 109 ~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p-~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~ 187 (511)
+++++|+|++|+++++++.|+...++++.|.+| ..+.+++++++++||+.||+|+|+|+++.+..++++.||++.+.|.
T Consensus 85 ~~~~ls~~~s~~~~~~il~Pi~~~~~~~~g~~~~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~i~~~~~~~~~~~~ 164 (396)
T cd00625 85 LTAALSAFFSNDATAVLLTPIVLALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIASLSGLGFLDFLAFMAPP 164 (396)
T ss_pred HHHHHHHHHhchhhhhhhHHHHHHHHHHhCCCCCccHHHHHHHHHhccccccccCCCCceEEEeCCCCCHHHHHHHHhHH
Confidence 899999999999999999999999999999999 9999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccc
Q 010427 188 MLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFES 267 (511)
Q Consensus 188 ~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~ 267 (511)
.++..+....+.++++++...+.++++ ++ + .+++
T Consensus 165 ~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~------------~~~~------------------------- 198 (396)
T cd00625 165 ALGLLLLLLGLLYLLFRKKLLLPDEDK------LT---V------------LAEP------------------------- 198 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhh------hh---h------------hhcc-------------------------
Confidence 888777655555444443321100000 00 0 0000
Q ss_pred cccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 010427 268 TQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTALTAALVLV 347 (511)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~al~~a~~l~ 347 (511)
+++..+++++....+. .+.+..++ ....++..+.+..++..++
T Consensus 199 -----------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (396)
T cd00625 199 -----------------------------------LPARPLLKKFLLLALL-LLLLFVLL-FFFLIPLGLIALLGALLLL 241 (396)
T ss_pred -----------------------------------ChhcccccHHHHHHHH-HHHHHHHH-HHHHHhHHHHHHHHHHHHH
Confidence 0000111111111111 11111111 1122556666666665544
Q ss_pred Hhcc--CChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHH
Q 010427 348 VLDF--KDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVL 425 (511)
Q Consensus 348 ~~~~--~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~ 425 (511)
+... .+.+|+.+++||+++++++|.++++.+++++|+.+++++.+.+..+.+.......+..++.++|+++||+|++.
T Consensus 242 l~~~~~~~~~~~~~~i~w~~~~~~~~~~~l~~~l~~~G~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~n~~~~~ 321 (396)
T cd00625 242 LLLVRGLDPEEVLKSVDWGTLLFFAGLFVLVGALESTGLLEWLAELLVALVGLPPLAALLLIGLLSALLSNFISNVPTVA 321 (396)
T ss_pred HHhcCCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4433 58899999999999999999999999999999999999998766432222223445668889999999999999
Q ss_pred HHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHH
Q 010427 426 LLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIG 505 (511)
Q Consensus 426 l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~ 505 (511)
++.|+.. ..+ ++...+...+...+.++++|++||.+|++.++..++. +++++++||+|+|+|.+++.++++
T Consensus 322 ~~~Pi~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~a~~l~~~~~~~~---~~~~~~~~~~k~g~~~~~~~~~~~ 392 (396)
T cd00625 322 LLLPIAA-SLA-----PPEPAWLALALGSTLGGNLTLIGSLANLIPLGAAENA---GVGISFGEFLKVGLPLTLLSLVVS 392 (396)
T ss_pred HHHHHHH-Hhc-----CchHHHHHHHHHhcccccccccccHHHHHHHHHHHHC---CCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999543 222 2334567778888999999999999999999987653 234679999999999999999888
Q ss_pred HHH
Q 010427 506 LAL 508 (511)
Q Consensus 506 ~~~ 508 (511)
+.+
T Consensus 393 ~~~ 395 (396)
T cd00625 393 LLY 395 (396)
T ss_pred HHh
Confidence 765
No 15
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=100.00 E-value=1.1e-39 Score=341.43 Aligned_cols=366 Identities=24% Similarity=0.327 Sum_probs=291.2
Q ss_pred HHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 010427 15 AFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSW 94 (511)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~ 94 (511)
+|..++++++.++ +|. ..+++.++.++.++|+.+++|++++++|+++++++|++.+++++++||+.+|+++++.+
T Consensus 3 i~~~~i~~w~~~~---~~~--~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~li~g~~~l~~~~~~tG~~~~la~~i~~ 77 (382)
T cd01115 3 ILVFAAVLFVTEA---LPL--DVTALLVPVLLVLLGVVPPKEAFSGFSDPAVILFLAGFILGAALTRTGLAKRIATKLLK 77 (382)
T ss_pred HHHHHHHHHHHCc---ccH--HHHHHHHHHHHHHhCCCCHHHHHHHcCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4455556666543 344 57789999999999999999999999999999999999999999999999999999886
Q ss_pred hcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc--
Q 010427 95 RSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL-- 171 (511)
Q Consensus 95 ~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-- 171 (511)
+.+ +++++...++.++.++|+|++|+++++++.|+..++|++.|.+|+++++++++++|.|++.||+|+|+|.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~ls~~~s~~~~~~i~~Pi~~~~~~~~g~~~~~~~l~~~~~~~~g~~~~p~g~~~n~i~~~~~ 157 (382)
T cd01115 78 RAGKGERRLLLLLMLVTAFLSAFMSNTATVAIMLPVALGLAAKLDISPSRLLMPLAFAASIGGMLTLIGTPPNLVASGYL 157 (382)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcccceecCCchHHHHHHHH
Confidence 644 56778888899999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ----CCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcc
Q 010427 172 ----QSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSK 247 (511)
Q Consensus 172 ----~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (511)
..++++.||.+.+.|..++++++. + +++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~--~~~~~---------------------------------------- 191 (382)
T cd01115 158 ESLGGQGFSFFEFTPIGLPLLIIGLLYL----W--FIFRL---------------------------------------- 191 (382)
T ss_pred HHccCCCcCHHHHHHHHHHHHHHHHHHH----H--HHHHH----------------------------------------
Confidence 245799999999998776554321 1 11000
Q ss_pred cccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHHHHHHH
Q 010427 248 RRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLI 327 (511)
Q Consensus 248 r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 327 (511)
......++..+.
T Consensus 192 --------------------------------------------------------------------~~~~~~i~l~~~ 203 (382)
T cd01115 192 --------------------------------------------------------------------AVLIITIVLLAA 203 (382)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Confidence 000011111111
Q ss_pred HHH--hCCcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhccc-chhH
Q 010427 328 ALL--MGLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINR-VGGI 404 (511)
Q Consensus 328 ~~~--~~l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~-~~~~ 404 (511)
... .+.|..+.+..++.+++..++.+.||..+++||+++++++|++.++.+++++|+.|++++.+.+..+..+ ....
T Consensus 204 ~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~w~~l~~~~~~~~l~~~l~~~Gl~~~ia~~l~~~~~~~~~~~~~ 283 (382)
T cd01115 204 LAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDYKSIDWGIIFLFAGGIPLGKALESSGAAALIAEALISLLGGLPPFAIL 283 (382)
T ss_pred HHHHcCcccHHHHHHHHHHHHHHHccCCHHHHHHcCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCCHHHHH
Confidence 111 2468888888888888888999999999999999999999999999999999999999999876433211 1122
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCce
Q 010427 405 SILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYT 484 (511)
Q Consensus 405 ~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~ 484 (511)
..+.+++.++|+++||++++.++.|++ ...++..|.+|....+..+++++ .+++||+|+++|+++++. ++
T Consensus 284 ~~~~~~~~~ls~~~sn~~~~~i~~Pi~-~~~~~~~g~~p~~~~~~~~~~~~-~~~~tp~~~~~n~i~~~~------~~-- 353 (382)
T cd01115 284 LLLCLLTLVLTNFISNTATAVLLAPIA-LSIALSLGLPPEALLLAVAIGAS-CAFMLPVGTPPNAIVLGP------GG-- 353 (382)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHH-HHHcCccCCCCCeeeeCC------CC--
Confidence 345678888999999999999999954 55666678887544444444444 579999999999998873 34
Q ss_pred eecchhhhhhhHHHHHHHHHHHHHh
Q 010427 485 LSFWTHLKFGLPSTIVITAIGLALI 509 (511)
Q Consensus 485 i~f~df~k~G~plt~l~~iv~~~~i 509 (511)
++|+||+|.|+|.+++.++++..+.
T Consensus 354 i~~~~~~~~~~p~~i~~~~~~~~~~ 378 (382)
T cd01115 354 YKFSDFAKVGLPLSILSLVVSVTMI 378 (382)
T ss_pred ccHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4699999999999999998877654
No 16
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=100.00 E-value=1.9e-39 Score=332.17 Aligned_cols=376 Identities=17% Similarity=0.192 Sum_probs=257.4
Q ss_pred HHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHH-HHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHH
Q 010427 46 MIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLE-IVLSWRSRGAKDLLCRICFISALSSALFTNDTCCV 124 (511)
Q Consensus 46 l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia-~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~ 124 (511)
.+++|..+++++++++.++.++++.+||+++.+++++|+.++++ +.+.+. ++++++.+.+|+.++++|+|+||+++++
T Consensus 75 a~~iG~~s~~~v~~e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~tklll~i-~Sk~~L~l~f~laaafLSaFLsnttvtA 153 (515)
T TIGR00774 75 AIAIGMTSAAHVKHELVANIEVLLLLVFMVAGIYFMKQLLLFIFTKLLLGI-RSKTLLSLAFCFAAAFLSAFLDALTVVA 153 (515)
T ss_pred HHHHCCCCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35679999999999999999999999999999999999999999 666666 5888899999999999999999999999
Q ss_pred HHHHHHHHH------------HHHcCCCchH-------------------HHHHHHHHHhhccCcccccccchhhhccCC
Q 010427 125 ILTEFVLKI------------ARQNGVSPHP-------------------FLLALASSANVGSSATPIGNPQNLVIALQS 173 (511)
Q Consensus 125 i~~Pi~~~i------------a~~~~~~p~~-------------------~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~ 173 (511)
+++|+.+.+ +++.+.++.+ ++|+.+++||+||++||+|||||+++++..
T Consensus 154 vmIpVavgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~fr~fl~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~ 233 (515)
T TIGR00774 154 VVISVAVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLENFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIADQA 233 (515)
T ss_pred HHHHHHHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHHh
Confidence 999999999 7777776666 899999999999999999999999999887
Q ss_pred CccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccc
Q 010427 174 GISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLS 253 (511)
Q Consensus 174 ~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~ 253 (511)
+.+|.+|+..+.|..+..++....+.. +..|.-- -. + .++. ++ ..|+
T Consensus 234 g~~F~~FF~~m~Pv~LP~lIilll~~~-l~~~~~~---~g---y--g~~l-----p~---------------~v~~---- 280 (515)
T TIGR00774 234 GWLFGEFFLRMSPVTLPVFICGLLTCA-LVEKLKV---FG---Y--GEKL-----PD---------------NVRQ---- 280 (515)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcc---cC---C--cccC-----CH---------------HHHH----
Confidence 777887777666655544333222111 1111100 00 0 0000 00 0110
Q ss_pred cCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchh-hHHHHHHHHHHHHHHHHHHHhC
Q 010427 254 ENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWK-RVSWKTCTYLVILGMLIALLMG 332 (511)
Q Consensus 254 ~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~l~~~~~~ 332 (511)
..++.+++. ++++..+.| +...+++....+ +++.++
T Consensus 281 -----------------------~l~~~~~~~----------------~~~~~~~~~~~l~~q~~~~~~l---~~~la~- 317 (515)
T TIGR00774 281 -----------------------ILVDFDREE----------------RKTRTNQDKIKLWVQALIAVWL---IVALAL- 317 (515)
T ss_pred -----------------------HHHHHhHHH----------------HHhcCHHHHHHHHHHHHHHHHH---HHHHHH-
Confidence 011101000 001111112 222233322111 111111
Q ss_pred CcHHHHHHHHHHHHH----HhccCCh---HHHHhh-cChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhH
Q 010427 333 LNMSWTALTAALVLV----VLDFKDA---MPCLDK-VSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGI 404 (511)
Q Consensus 333 l~~~~~al~~a~~l~----~~~~~~~---~~~~~~-idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~ 404 (511)
+++-+.++|....+ ..+..|+ .+++++ .+...++-+ .|.++..+.+..+-+-+-+++.... +..+.
T Consensus 318 -h~a~vg~igl~vii~~t~~~g~~~eh~~g~af~ealpftall~v--ff~~vavi~~q~lf~p~i~~vl~~~---~~~q~ 391 (515)
T TIGR00774 318 -HLAAVGLIGLSVIILATSFTGVTDEHSIGKAFEESLPFTALLAV--FFSVVAVIIDQELFSPIIDFVLAAE---EKTQL 391 (515)
T ss_pred -HHHHHhHHHHHHHHHHHHhcCCcchhhhhHHHhhhccHHHHHHH--HHHHHHHHHhhhhhHHHHHHHHcCC---Cccch
Confidence 12222233332222 2344443 355544 566554433 4666677777766666666654332 23355
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCc-c---hhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCC
Q 010427 405 SILAIIILVLSNVASNVPTVLLLGARVAASAGAISES-E---EKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKP 480 (511)
Q Consensus 405 ~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~-~---~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ 480 (511)
.++.+.++++|+++||+|.++.|.|.+... . ..+. + .+..||.++.++|.|||+||+|+.||+++.+.++|
T Consensus 392 ~~ilw~SgilSa~IDNVP~vatmIPvIk~l-~-~~G~~~~~~~~~LWWALALGA~LGGNaTpiGAsANLVv~~iA~k--- 466 (515)
T TIGR00774 392 ALFYVFNGLLSSISDNVFVGTVYINEAKAA-L-TEGLITREQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALA--- 466 (515)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-H-hcCCCccccccHHHHHHHHhccccccccHHHHHHHHHHHHHHHh---
Confidence 667788999999999999999999977544 2 2232 1 23579999999999999999999999999999887
Q ss_pred CCceeecchhhhhhhHHHHHHHHHHHHHh
Q 010427 481 SGYTLSFWTHLKFGLPSTIVITAIGLALI 509 (511)
Q Consensus 481 ggy~i~f~df~k~G~plt~l~~iv~~~~i 509 (511)
.|||++|+||+|+|+|.|+++++++..++
T Consensus 467 ~G~rISF~~flK~GlP~TLvsliVs~lyl 495 (515)
T TIGR00774 467 PLIRLSYGRMVYMALPYTIVLAIVGLLGI 495 (515)
T ss_pred CCCCccHHHHHHHhHHHHHHHHHHHHHHH
Confidence 49999999999999999999999997654
No 17
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-39 Score=343.80 Aligned_cols=383 Identities=22% Similarity=0.274 Sum_probs=296.3
Q ss_pred hhHHHHHHHHHHHHHhcC----CChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHHHHHH
Q 010427 34 GRTAGALLGAMLMIIFKV----ITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLCRICF 108 (511)
Q Consensus 34 ~~~~~al~~~~~l~~~g~----~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~~~~~ 108 (511)
++.+.+++...+.++.+. .+.+++.+.++|++++.+++++.++.+++++|+.++++.++.+..+ +++++...++.
T Consensus 50 ~~~~~~ll~~~~~~l~~~~~~~~~~~~~l~~~~~~~I~l~~~~f~~s~~~~~~gl~~~la~~~l~~~~~~p~~l~~~l~~ 129 (461)
T COG0471 50 PLFALAILVIVLLVLSGFILAISASKLALSGFANSTIWLIFGLFLLSKGLEKTGLGKRLALHLLRFFGTTPRGLALGLVL 129 (461)
T ss_pred hHHHHHHHHHHHHHHhhhhhccccHHHHHHHhhccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 345678888888888888 7899999999999999999999999999999999999988776655 78999999999
Q ss_pred HHHHHH-hhcchhhHHHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHhhccCcccccccchhhhccCCC---ccHHH
Q 010427 109 ISALSS-ALFTNDTCCVILTEFVLKIARQNGVSPH-----PFLLALASSANVGSSATPIGNPQNLVIALQSG---ISFGK 179 (511)
Q Consensus 109 ~~~~lS-~flsN~~t~~i~~Pi~~~ia~~~~~~p~-----~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~---~~f~~ 179 (511)
+++++| ++.+|+++..++.|++..+++..|.++. .+.+.+..++|+|+..||+|+|+|.+.++..+ ++|.+
T Consensus 130 ~~~~ls~~~~sntat~~i~~piv~~~~~~~~~~~~~~~~~~l~~~i~~~~~ig~~~~~ig~~~N~i~~~~~~~~~~~~~~ 209 (461)
T COG0471 130 LTLFLSPAFPSNTATGGIMLPLILSLSPLLGSPPRDKIGKRLILGIALAANIGSALTPIGNPPNIIAAGLLNPISLSWGE 209 (461)
T ss_pred HHHHHhCceecccchhHhhHHhhhcchhhcCCChHHHHHHHHHHHHHHHhHhhcccccccCCccHHHHHhhcccCCCHHH
Confidence 999999 9999999999999999999999999888 68889999999999999999999999987766 99999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccc
Q 010427 180 FLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCN 259 (511)
Q Consensus 180 f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~ 259 (511)
|.+.+.|+.++.+.... ++.++..|.+..+ +.+ +.+.
T Consensus 210 w~~~~~p~~iv~l~~~~----li~~~~~~~~~~~--------~~~------~~~~------------------------- 246 (461)
T COG0471 210 WFLAMLPLGILLLLLLL----LLLYKLFPPREIK--------ETP------NNPV------------------------- 246 (461)
T ss_pred HHHHHhhHHHHHHHHHH----HHHHhhcChHhhc--------cCc------chHH-------------------------
Confidence 99999999887766532 2333333321100 000 0000
Q ss_pred cCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHhC-----Cc
Q 010427 260 LSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMG-----LN 334 (511)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~-----l~ 334 (511)
..+|+.+. ..+. . .+.+. ...++.........+ ..
T Consensus 247 --------------------~~~~~~~~--------------~~~~-~-~~~~l----~~~i~~l~~~~w~~~~~~~~~~ 286 (461)
T COG0471 247 --------------------AAKRELKE--------------LGPL-L-RDEKL----LLGIFLLLLLLWIFGKLLGKID 286 (461)
T ss_pred --------------------HHHHHHHH--------------hcCc-c-hhhHH----HHHHHHHHHHHHHhccccchhH
Confidence 00000000 0000 0 00111 111111111112111 14
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccch-hHHHHHHHHHH
Q 010427 335 MSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVG-GISILAIIILV 413 (511)
Q Consensus 335 ~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~-~~~~l~~~~~i 413 (511)
...+++.+..++.+.++.+.+|+++++||+++++|+|+++++.+++|+|..+++++.+....+..+.. -...+++.+..
T Consensus 287 ~~~~ali~~~~~~~~~vl~~~~~~~~i~W~~lilf~g~i~l~~~l~~tG~~~~i~~~l~~~~~~~~~~~il~~~~~~~~~ 366 (461)
T COG0471 287 ATLIALIPVALLLLAGVLTWKEVYKKIDWGTLILFGGLIALGSALSKTGAIAWIAGLLAGSLGGLGPFAILLLLLLLTLV 366 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhCCchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 45678888888888888888899999999999999999999999999999999999987654422111 12334567888
Q ss_pred HHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhh
Q 010427 414 LSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKF 493 (511)
Q Consensus 414 lS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~ 493 (511)
+++|+||+|++.+|.| +...+++..+.+| ..+.++++.+++|+++||+||++|.++++ +|+|| ++||+|.
T Consensus 367 ~~~f~SntA~~~~m~P-i~~~ia~~l~~~p-~~~~~~v~~~as~~~~tpv~~~~n~iv~g------~G~~k--~~d~~~~ 436 (461)
T COG0471 367 LTLFASNTATAIAMVP-IAIALASALGGAP-LLLLMLVAVSASGGFLTPVGSPPNPIALG------SGYVK--FKDWWKV 436 (461)
T ss_pred HHHHHhHHHHHHHHHH-HHHHHHHhcCCCc-hHHHHHHHHHHhhhhhcCCCCCCCceEEC------CCCcc--HHHHHHh
Confidence 9999999999999999 5567777777777 57889999999999999999999999999 58886 9999999
Q ss_pred hhHHHHHHHHHHHHHh
Q 010427 494 GLPSTIVITAIGLALI 509 (511)
Q Consensus 494 G~plt~l~~iv~~~~i 509 (511)
|+|++++..++.+.++
T Consensus 437 G~~l~~v~~iv~i~~~ 452 (461)
T COG0471 437 GFILSIVLIIVLLVIG 452 (461)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999988876553
No 18
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=8e-38 Score=336.03 Aligned_cols=406 Identities=23% Similarity=0.304 Sum_probs=285.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCCh---HHHHHhCChhHHHHHHHHHHHHHHHH
Q 010427 4 APTENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITP---EEAFAAIDLSVLGLLFGTMVVSFYLE 80 (511)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~---~~a~~~~~~~~i~~l~g~~~i~~~l~ 80 (511)
+++.+...++++++ .++++ .+.+|.. +++++...++..++..++ +++++++.++++++++|+|+++.+++
T Consensus 27 ~~~~~~~l~i~~~~--ii~w~---te~iP~~--vtal~~~~l~~~~~~~~~~~~~~~~s~f~s~~v~li~g~f~i~~al~ 99 (471)
T PF00939_consen 27 SPQGMRCLAIFLFA--IILWI---TEAIPLP--VTALLIIILLPVLGGVDPVAAKEAFSGFGSPTVWLIIGGFIIGAALE 99 (471)
T ss_pred CHHHHHHHHHHHHH--HHHHH---cCCCChH--HHHHHHHHHHHHHhccccccHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 34445555555543 33334 3445665 568888888877777776 99999999999999999999999999
Q ss_pred HhcHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHhhcchh-hHHH-HHHHHHHHHHHHcCCCchH---------HHHHH
Q 010427 81 RAGMFKYLEIVLSWRS-RGAKDLLCRICFISALSSALFTND-TCCV-ILTEFVLKIARQNGVSPHP---------FLLAL 148 (511)
Q Consensus 81 ~tG~~~~ia~~l~~~~-~~~~~ll~~~~~~~~~lS~flsN~-~t~~-i~~Pi~~~ia~~~~~~p~~---------~l~~~ 148 (511)
|||+.+|++.++.++. ++++++...++....+++.++.++ +.++ ++.|++.++|++.|.+++. +++..
T Consensus 100 ktgL~~Ria~~~l~~~g~~~~~l~~~~~~~~~~l~~~~ps~~a~~~~i~~pi~~~i~~~~~~~~~~~~~~~~~~~l~l~~ 179 (471)
T PF00939_consen 100 KTGLDKRIALWLLKRFGGSPKGLLFAIMLAGLLLSFFIPSTTARAAPILLPILLSICEALGSKPSSKTPRNLGKALMLGI 179 (471)
T ss_pred HcCHHHHHHHHHHHHhCCchheehhHhhHHHHHHhccCccHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHHHHHH
Confidence 9999999999888664 467788888888888899888554 4443 5569999999998877643 67888
Q ss_pred HHHHhhccCcccccccchhhhcc------CCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCC
Q 010427 149 ASSANVGSSATPIGNPQNLVIAL------QSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDD 222 (511)
Q Consensus 149 a~aan~Gg~~TpiG~p~Nliv~~------~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~ 222 (511)
++++++||+.||.|+++|.+..+ ..+++|.||+..++|+.++.+++...+ .++..|++.++.
T Consensus 180 ~~~a~~~g~~~~~g~~~n~i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~~~~----~~~l~~~~~~~~-------- 247 (471)
T PF00939_consen 180 AFAASIGGMGTLTGSAPNLIAAGFLESATGISISFLDWFIYALPPGIIMLVLMWLI----LYKLFKPDVKNL-------- 247 (471)
T ss_pred hhhccccccccccCCCchHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHH----HHHHhccccccc--------
Confidence 99999999999999999998753 345899999999999887765553322 223332211100
Q ss_pred CCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCccccccccc
Q 010427 223 TSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKD 302 (511)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
++. + +..+ ++. ++
T Consensus 248 -------~~~-------~-----------------------------------~~~~---~~~---------------~~ 260 (471)
T PF00939_consen 248 -------PDG-------K-----------------------------------EFIK---KEL---------------KE 260 (471)
T ss_pred -------hhh-------H-----------------------------------HHHH---HHH---------------Hh
Confidence 000 0 0000 000 00
Q ss_pred CCcccchhhHHHHHHH-HHHHHHHH-HHHHhCCcHHHHHHHHHHHHHHhccCChHHH-HhhcChhHHHHHHHHHHHHHHH
Q 010427 303 NTQKWDWKRVSWKTCT-YLVILGML-IALLMGLNMSWTALTAALVLVVLDFKDAMPC-LDKVSYSLLIFFCGMFITVEGF 379 (511)
Q Consensus 303 ~~~~~~~~~~~~~~~~-~~i~~~~l-~~~~~~l~~~~~al~~a~~l~~~~~~~~~~~-~~~idw~~ll~f~glf~l~~al 379 (511)
..+-.++++ +... +++++..+ .....|++.++++++++.++.+.+..+.||. .+++||+++++++|.+.++.++
T Consensus 261 -lg~~s~~Ek--~~~~i~~~~i~lw~~~~~~~i~~~~va~~~~~ll~~~~il~~~d~~~~~i~W~~l~~~~g~~~lg~~l 337 (471)
T PF00939_consen 261 -LGPMSKKEK--KVLVIFLLTILLWITESFHGIDPAIVALLGAVLLFLPGILTWKDAAQKKIPWGTLFLFGGALSLGTAL 337 (471)
T ss_pred -cCCCchhHh--hhhhhhhhhhhcccCcccCCCCHHHHHHHHHHHHHHHHhccHHHHHhcCCCchhHHHHHHHHHHHHHH
Confidence 000000111 1111 11111111 1123468999999999999999999999875 5789999999999999999999
Q ss_pred HhhChHHHHHHHhhhhhhcccchh-HHH-HHHHHHHHHHhhchHHHHHHHHHHHHHhhcccc-CcchhHHHHHHHHHHhh
Q 010427 380 NKTGIPSTLWTLMEPHARINRVGG-ISI-LAIIILVLSNVASNVPTVLLLGARVAASAGAIS-ESEEKKAWLILAWVSTV 456 (511)
Q Consensus 380 ~~tG~~~~ia~~l~~~~~~~~~~~-~~~-l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~-~~~~~~~~~~l~~~~~~ 456 (511)
+++|+.+|+++.+.+..+..+... ... +.+...+.++++||++++.++.|++ ...++.. |.||. ...+....++.
T Consensus 338 ~~sG~~~~la~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~s~~a~~~il~Pi~-~~~a~~~~g~~p~-~~~l~~~~~~~ 415 (471)
T PF00939_consen 338 EKSGAAKWLANVLLPLLGGLSPFLVVLVILLVTVLLLTNFMSNTATVAILIPIV-ISLAAALGGINPL-ALALIVAFASS 415 (471)
T ss_pred HhcCHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHhhhccCCChH-HHHHHHHHHhh
Confidence 999999999999987654111111 112 2234456799999999999999954 5666666 77765 33444343444
Q ss_pred h-cChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHHH
Q 010427 457 A-GNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 457 g-g~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~ 508 (511)
. ++++|++|++|.++++. |+| +.+||+|.|+|++++..++...+
T Consensus 416 ~~~~~lP~~sp~~~i~~~~------g~~--~~~d~~k~G~~~~ii~~iv~~~~ 460 (471)
T PF00939_consen 416 FAGFLLPYSSPPNAIAYGT------GYY--KFKDFIKYGFPLTIIAIIVIILV 460 (471)
T ss_pred hccccCCcCCcceeEEEcC------CCC--CHHHHHHHhHHHHHHHHHHHHHH
Confidence 4 59999999999999983 555 59999999999999988766543
No 19
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.2e-37 Score=319.31 Aligned_cols=304 Identities=36% Similarity=0.531 Sum_probs=241.6
Q ss_pred chhHHHHHHHHHHHHHh-----cCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCc-hhHHHHH
Q 010427 33 IGRTAGALLGAMLMIIF-----KVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGA-KDLLCRI 106 (511)
Q Consensus 33 i~~~~~al~~~~~l~~~-----g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~-~~ll~~~ 106 (511)
.++...+.+++.++.++ +..+++|+++.++|+++++++||+. +++++|||++|++++++.++.++. +++++.+
T Consensus 18 ~~~~~~~~~~a~~~~l~g~~~~~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~~~~~l~~~~ 96 (351)
T PF03600_consen 18 IPVVAAALLGALLVALFGFPGFGVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGGKPWRLLLLL 96 (351)
T ss_pred hhHHHHHHHHHHHHHHHHhccccccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCCCHHHHHHHH
Confidence 45567777888888888 8899999999999999999999999 999999999999999999887764 5888899
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccH--HHHHHhH
Q 010427 107 CFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISF--GKFLLGI 184 (511)
Q Consensus 107 ~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f--~~f~~~~ 184 (511)
+.+++++|+|+||+++++++.|+++++|++.|++|+++++++++++|+||++||+|||+|+++.+..+++| .||...+
T Consensus 97 ~~~~~~lS~~~~N~~~v~~~~Pi~~~~~~~~~i~~~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~~~~~~~~~~~~~~~~ 176 (351)
T PF03600_consen 97 MLVTALLSAFLDNTTVVLIMIPIVLSLARKLGIPPSPLLMPLAFAANIGGMLTPIGNPTNLIIANASGLPFFGFDFFALG 176 (351)
T ss_pred HHHHHHHHHhhhcchHHHhhHHHHHHHHHHcCCChHHHHHHHHHHhccccccCcCCCcchhhhhhhcccccchhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCc
Q 010427 185 LPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGE 264 (511)
Q Consensus 185 lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~ 264 (511)
+|..++++++.....+ ++.+|++
T Consensus 177 ~p~~i~~~~~~~~~~~-----~~~~~~~---------------------------------------------------- 199 (351)
T PF03600_consen 177 LPAVIVGLLVLIFILY-----FLFRKRK---------------------------------------------------- 199 (351)
T ss_pred HHHHHHHHHHHHHHHH-----HHccccC----------------------------------------------------
Confidence 9998887766432221 1210000
Q ss_pred ccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHhCCcHHHHH-HHHH
Q 010427 265 FESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTA-LTAA 343 (511)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~a-l~~a 343 (511)
++.. .....++...+......|..+.+.+ +.++
T Consensus 200 -------------------------------------------~~~~---~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 233 (351)
T PF03600_consen 200 -------------------------------------------PKLF---ASPFILVLVVILVLLVSGLVPIWIALLIGA 233 (351)
T ss_pred -------------------------------------------cchh---HHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 0000 0111122222222224665455554 5577
Q ss_pred HHHHHhccCChHHHHh------hcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHh
Q 010427 344 LVLVVLDFKDAMPCLD------KVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNV 417 (511)
Q Consensus 344 ~~l~~~~~~~~~~~~~------~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~ 417 (511)
.+++.+++++.+|.++ ++||+++++|+|+|++++++++||..|.+++.+.+..+ ......+...+.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~l~~tG~~~~la~~l~~~~~---~~~~~~i~~~~~~ls~~ 310 (351)
T PF03600_consen 234 LLALLTNCKDLKEAYRVLNSGASIDWNTLLFFAGLFIFVGALSNTGAFEALADWLLSISG---PLGPLAILWVSALLSAV 310 (351)
T ss_pred HHHHHHhcccchhhhHHHHhhccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHH
Confidence 7777788999999999 99999999999999999999999999999999876543 12234455568899999
Q ss_pred hchHHHHHHH-----HHHHHHhhccccCcchh
Q 010427 418 ASNVPTVLLL-----GARVAASAGAISESEEK 444 (511)
Q Consensus 418 isN~a~~~l~-----~P~i~~~~a~~~~~~~~ 444 (511)
+||+|.+..+ .| +....++..|.+|.
T Consensus 311 ~~n~p~~~~~~~~~~~p-i~~~~~~~~Gv~~~ 341 (351)
T PF03600_consen 311 ISNVPATLLMSNDAMLP-IAISMAQQFGVSPL 341 (351)
T ss_pred HHhhhHHHHHhhhHHHH-HHHHHHHHCCCCHH
Confidence 9999999998 77 33455555676664
No 20
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=99.97 E-value=3.3e-27 Score=250.37 Aligned_cols=353 Identities=14% Similarity=0.150 Sum_probs=251.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCc
Q 010427 63 LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRG-AKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSP 141 (511)
Q Consensus 63 ~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~-~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p 141 (511)
.++..++.....++..++++|.+|++++++.++.++ ++++.+.+..++..++.+.+|+.+.+++.|+...+++++|++|
T Consensus 57 ~~~~~~i~~~~~l~~il~~sG~~~~i~~~iv~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~li~~p~~~~l~~~lgi~~ 136 (431)
T TIGR00784 57 APTAAMLLFAILYFGIMIDAGLFDPLIEKILSIVKGDPLKIAVGTAVLTMLIALDGDGTTTYMITVSAMLPLYKRLGMNP 136 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCceeHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHcCCCH
Confidence 456667777788889999999999999999988776 5778888888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCC
Q 010427 142 HPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDD 221 (511)
Q Consensus 142 ~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~ 221 (511)
.++..+++.+++.++ .+|.|+|+|..... .|+++.||+.+..|..+.++++...+.++.+||... | ++.+.
T Consensus 137 ~~l~~~i~~~~~~~~-~~P~g~p~~~~a~~-lg~~~~~~~~~~~p~~i~~li~~~~~~~~~~r~~~~-~-~~~~~----- 207 (431)
T TIGR00784 137 MVLAGIAMLGLGIMN-MIPWGGPTTRAISV-LGLDPSEFFVPLIPTMLGGILCVIAVAYLLGKKERK-R-LGVIQ----- 207 (431)
T ss_pred HHHHHHHHHHhhhhc-ceeCCchHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH-H-hcccc-----
Confidence 999999999999999 99999999976544 589999999999999999887766655555554431 1 11000
Q ss_pred CCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccc
Q 010427 222 DTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKK 301 (511)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
. +++ . . + + + ++ .
T Consensus 208 -~-----~~~--~-----~-~-----~-------~--------------------------~~----------------~ 219 (431)
T TIGR00784 208 -L-----EPR--A-----S-Q-----S-------Y--------------------------PA----------------A 219 (431)
T ss_pred -c-----chh--h-----h-h-----h-------h--------------------------hc----------------c
Confidence 0 000 0 0 0 0 0 00 0
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhcc----CChHHHH----hhcChhHHHHHHHH
Q 010427 302 DNTQKWDWKRVSWKTCTYLVILGMLIALLMG-LNMSWTALTAALVLVVLDF----KDAMPCL----DKVSYSLLIFFCGM 372 (511)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~-l~~~~~al~~a~~l~~~~~----~~~~~~~----~~idw~~ll~f~gl 372 (511)
+++++.++++..++.++. ++.+++....+ +++.+.++.+..+.++.+. ...++.. +.+||.++++++|+
T Consensus 220 ~~~~~~~~~~~~~~~Ll~--~l~viv~~~~~~~~~~~~~li~~~iall~~~~~~~~~~~~i~~~~~~~v~~~~Li~~agl 297 (431)
T TIGR00784 220 ALESELKRPRLIWFNLLL--TISLMVFLVLGTKHLSVLFLIAFVLALTVNYPNVKMQKERIAAHSGNALTVVSMVFAAGV 297 (431)
T ss_pred chhhhhcCchHHHHHHHH--HHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccHhHHHHHHHHHHH
Confidence 000000011111223221 11222222233 5677787777766666553 2334555 67999999999999
Q ss_pred HHHHHHHHhhChHHHHHHHhhhhhhcccc-hhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHH
Q 010427 373 FITVEGFNKTGIPSTLWTLMEPHARINRV-GGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILA 451 (511)
Q Consensus 373 f~l~~al~~tG~~~~ia~~l~~~~~~~~~-~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~ 451 (511)
| +++++++|..+.+++.+.+..+.+.. ....++.+++..+|+++||+|++..+.|++ ...++..|.++. .....+
T Consensus 298 f--~~~l~~~G~i~~la~~l~~~~~~~~~~~~~~i~~~~s~~~s~~~sn~a~~~~l~Piv-~~ia~~~G~~~~-~l~~a~ 373 (431)
T TIGR00784 298 F--TGILSGTKMVDAMAGSLVSIIPSSMGGFFPVIVALTSIPFTFVMSNDAYYFGVLPIF-AEAASAYGIDPV-EIARAS 373 (431)
T ss_pred H--HHHHhhcCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHcCCCHH-HHHHHH
Confidence 9 99999999999999999876432211 123445678889999999999999999955 556666777664 333333
Q ss_pred HHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHH
Q 010427 452 WVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLA 507 (511)
Q Consensus 452 ~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~ 507 (511)
..+.++.+.+|+ +++|.++++. ++++ .+|+.|.|++......++...
T Consensus 374 ~i~~~~~~~SPv-s~~~~l~~~~------~~~~--~~d~~k~~~~~~~~~~~v~~~ 420 (431)
T TIGR00784 374 IMGQPVHLLSPL-VPSTVLLVGM------LGVS--LGDHQKFAVKWAVITSIVMTL 420 (431)
T ss_pred HhcccchhcCCc-hHHHHHHHHc------cCCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 334455679999 8999999984 5664 899999999998887776543
No 21
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.8e-25 Score=231.36 Aligned_cols=409 Identities=18% Similarity=0.219 Sum_probs=269.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHH
Q 010427 7 ENVVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFK 86 (511)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~ 86 (511)
.+-.+.+...+..|.... +|+. +.+++...+....|+++.+|..+..-.++.+++.|-.+++.+.|+.++.+
T Consensus 42 ~~c~y~~~vm~~yw~~Ea------lpl~--vtal~p~~l~p~~gi~~s~eva~~yf~d~~~l~~~~l~~A~AvE~~~Lh~ 113 (586)
T KOG1281|consen 42 ARCAYVILVMAVYWVTEA------LPLA--VTALLPIVLFPFFGIVRSNEVANEYFKDTNLLFLGGLIMALAVEKCNLHK 113 (586)
T ss_pred HHHHHHHHHHHHHHHHhh------cCch--HHHHHHHHHHHHhcCccHHHHHHHHHhhhhHHHhhhHHHHHHHHHhhhhH
Confidence 344444444455565544 3554 55899999999999999999887777788888888899999999999999
Q ss_pred HHHHHHHHh-ccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCC--------------------------
Q 010427 87 YLEIVLSWR-SRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGV-------------------------- 139 (511)
Q Consensus 87 ~ia~~l~~~-~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~-------------------------- 139 (511)
+++.+..+. +..|.++.+..+..++++|+|++|++++++|+|++..+-++...
T Consensus 114 riaL~~~~~vg~~P~~l~lg~m~~taflsmwisntA~tamm~pi~~avL~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 193 (586)
T KOG1281|consen 114 RIALKVLRKVGVEPARLMLGFMGVTAFLSMWISNTATTAMMIPIATAVLQELPSFNDEEQHRMLESVSHLWAVEAIPTSF 193 (586)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHhhcchhhhcCCccc
Confidence 999877654 44688888899999999999999999999999999877554322
Q ss_pred -Cc-------------------------------------hHHHHHHHHHHhhccCcccccccchhhhcc---------C
Q 010427 140 -SP-------------------------------------HPFLLALASSANVGSSATPIGNPQNLVIAL---------Q 172 (511)
Q Consensus 140 -~p-------------------------------------~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~---------~ 172 (511)
.| .-+.+.+++++++||.+|..|+.+|++..+ .
T Consensus 194 ~vp~~~v~~~~~~~~~g~~~~~~~~~i~~~~~s~~~~~~~~g~~L~ia~Sa~igg~~titGT~pnlVll~~~~~~fp~s~ 273 (586)
T KOG1281|consen 194 LVPLLTVFFPILKDETGKPMSPTSSSILSTMWSSTIMLLLKGFTLGIAYSAYIGGTLTITGTAPNLVLLGNMNVRFPLSM 273 (586)
T ss_pred CCcchhhcccccCCccCCCCCcchhhhhhhccchHHHHHHHHHHHHHHHHHhhcchhhhcCCCccHHHHHHHHHhccccc
Confidence 01 235678899999999999999999998853 2
Q ss_pred CCccHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccc
Q 010427 173 SGISFGKFLLGILPSMLVGVFVNTLILLCMYW-RILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRS 251 (511)
Q Consensus 173 ~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~-~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~ 251 (511)
...+|..|+.+.+|+.+..+++....+.+++- ..++++..+. . +|.+. + +
T Consensus 274 ~~~Nf~swl~Fs~ppmL~~L~~~w~~l~~lflG~~~~~~~~~~---------~----s~~~s--------~-----q--- 324 (586)
T KOG1281|consen 274 WVSNFASWLFFSFPPMLRYLLASWPFLQALFLGIALAANIGGM---------S----SPISS--------P-----Q--- 324 (586)
T ss_pred cccchHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhhhhhcCC---------C----CCcCC--------h-----H---
Confidence 23789899989999887777665443322221 1111000000 0 00000 0 0
Q ss_pred cccCcccccCCCcccccccchhhhhHHHH--HHHhhccccccCCcccccccccCCcccchhhHHHHHHHHH-HH-HHHHH
Q 010427 252 LSENDLCNLSGGEFESTQNSVASKDQAAE--IIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYL-VI-LGMLI 327 (511)
Q Consensus 252 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~-~~~l~ 327 (511)
+.... .+++. ++..++.. ..++..++ ++ +.+++
T Consensus 325 ------------------------~~~a~~~i~~~y------------------~~lG~~~~-~e~~v~ilfil~v~lw~ 361 (586)
T KOG1281|consen 325 ------------------------NIVAKKVIKPEY------------------DGLGPMFF-AEKPVFILFILLVWLWF 361 (586)
T ss_pred ------------------------HHHHHHHhhHhh------------------cccccchH-HHHHHHHHHHHHHHHHH
Confidence 00000 00000 00001100 00111111 10 01111
Q ss_pred HHHhCC--------------cHHHHHHHHHHHHHHh----------------------ccCChHHHHhhcChhHHHHHHH
Q 010427 328 ALLMGL--------------NMSWTALTAALVLVVL----------------------DFKDAMPCLDKVSYSLLIFFCG 371 (511)
Q Consensus 328 ~~~~~l--------------~~~~~al~~a~~l~~~----------------------~~~~~~~~~~~idw~~ll~f~g 371 (511)
..-.|+ .....+.++..++.+. +..+.++..++++|+++++.+|
T Consensus 362 tr~p~~~pgw~~~f~~~~~~~d~t~~~~i~ilLf~lps~~~~f~~~~~~~~~p~~~~~~l~~w~~~q~~fPWsIvlLlgG 441 (586)
T KOG1281|consen 362 TRDPGFVPGWGDLFKPGFFQSDSTSVVIITILLFCLPSQIPGFGKSGFIAIIPIVVFFGLGLWKTVQFTFPWSIVLLLGG 441 (586)
T ss_pred hcCCCCccchHhhcCCccceehhhHHHHHHHHhheecccCccccccCcccccccccccCccchhhhcccCCchHhhhhcc
Confidence 000011 1111222222222221 1123345556799999999999
Q ss_pred HHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHH
Q 010427 372 MFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILA 451 (511)
Q Consensus 372 lf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~ 451 (511)
.|.++.|.++||+.++|++.+.+..+.+...-..++++++.++|+|.||++++.++.|++ ..+++..+.+|. +++.-.
T Consensus 442 GfALakgv~sSGLs~~I~~~L~~l~~~p~~~i~li~~ll~~v~TeF~Sntata~IfiPIl-~ela~~l~~hpl-yl~lp~ 519 (586)
T KOG1281|consen 442 GFALAKGVSSSGLSSLIGNALKPLESLPVFAILLIFSLLILVVTEFVSNTATASIFIPIL-AELAEALGIHPL-YLMLPT 519 (586)
T ss_pred chhhhhhcccccHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHhcchhheeehHHhH-HHHHHhcCCCCc-eeehhH
Confidence 999999999999999999999874433222223445678889999999999999999965 567777777664 566678
Q ss_pred HHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHH
Q 010427 452 WVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIG 505 (511)
Q Consensus 452 ~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~ 505 (511)
..+|+.+++.|+++++|.++++. |.. +-+||+|.|+.+++...++-
T Consensus 520 tl~~SfAf~LPvstpPNaivfs~------~~~--k~~dm~~~G~~l~i~~~a~l 565 (586)
T KOG1281|consen 520 TLACSFAFMLPVSTPPNAIVFSM------GDI--KGKDMLKVGLFLNIGGPAIL 565 (586)
T ss_pred HHHHHHHHhcCCCCCCCeEEEee------ccc--chhhHhhhccchhHHHHHHH
Confidence 88999999999999999999985 333 46899999998887665543
No 22
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.87 E-value=3e-19 Score=189.04 Aligned_cols=158 Identities=18% Similarity=0.294 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHh
Q 010427 37 AGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLCRICFISALSSA 115 (511)
Q Consensus 37 ~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~~~~~~~~~lS~ 115 (511)
..+-+|...+.+.=-.+|+| +++++++++++++...+.++|||..|+.++...+..+ ++++..+.+.+++.++|.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~----~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~~~~lli~i~~~lfs~ 101 (433)
T PRK09412 26 FAGGLGVLILTFIFGLKPGS----IPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPKYITFLAPIVTYLFTF 101 (433)
T ss_pred HHHHHHHHHHHHhcCCCCCC----CCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHH
Confidence 33445554444432455666 9999999999999999999999999999997766554 466777777888889998
Q ss_pred hcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc--CCCccHHHHHHhHHHHHHHHHH
Q 010427 116 LFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL--QSGISFGKFLLGILPSMLVGVF 193 (511)
Q Consensus 116 flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~--~~~~~f~~f~~~~lp~~ii~l~ 193 (511)
+.+|..+++.+.|+...+|+++|.||.+.+....+++|+|+..||+|.++|.+... ..+++|.||++..+|..++.++
T Consensus 102 ~~~~~~~~i~~~PI~i~ia~~lG~d~~~~l~~~~~~a~iG~~aspin~~tv~ia~~ia~~gi~f~~~~~~~lp~~iv~~~ 181 (433)
T PRK09412 102 LAGTGHIAFSTLPVIAEVAKEQGIRPSRPLSIAVVASQIAITASPISAAVVAMSSVLEPLGVSYLTLLMVVIPSTLLAVM 181 (433)
T ss_pred HhcHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 88887778889999999999999999988899999999999999998887766543 3479999999999999888777
Q ss_pred HHHHH
Q 010427 194 VNTLI 198 (511)
Q Consensus 194 ~~~~~ 198 (511)
+...+
T Consensus 182 ~~~~~ 186 (433)
T PRK09412 182 VAAFV 186 (433)
T ss_pred HHHHH
Confidence 65444
No 23
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=99.86 E-value=1.5e-20 Score=198.95 Aligned_cols=183 Identities=27% Similarity=0.286 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCC-ChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHH
Q 010427 11 LGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVI-TPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLE 89 (511)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~-~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia 89 (511)
++..++..+...+.....+. ++...++++++.++...+.. +++|+++.++|+++++++|+++++.+++++|+.++++
T Consensus 219 ~~~~i~~~~v~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~~~l~~~l~~tG~~~~la 296 (413)
T cd01116 219 KSLTILTLVIIGFVLHSPLG--VSLGWIALLGALLLLLLADKLDFEDVLSRVEWDTLLFFAGLFVLVGGLEELGIIEWIA 296 (413)
T ss_pred HHHHHHHHHHHHHHhccccC--CCHHHHHHHHHHHHHHHcCCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 33334444444344333322 34456788888888888886 9999999999999999999999999999999999999
Q ss_pred HHHHHhccC-chhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhh
Q 010427 90 IVLSWRSRG-AKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLV 168 (511)
Q Consensus 90 ~~l~~~~~~-~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nli 168 (511)
+.+.+..++ ++..+..+++++.++|+|+||++++.++.|++..+|++.|.+|.++.+.+++++|+|+..||+|+|+|++
T Consensus 297 ~~l~~~~~~~~~~~~~~~~~~~~~~s~f~sn~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~a~~g~~~tp~gs~~n~i 376 (413)
T cd01116 297 ELLVGVILGRIAVAVILILWISALLSAFIDNIPVTATMIPIVKDLASQLGIPLLPLWWALALGACLGGNGTLIGASANVV 376 (413)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccccccchHHHH
Confidence 998876654 5566667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC-----CCccHHHHHHhHHHHHHHHHHHH
Q 010427 169 IALQ-----SGISFGKFLLGILPSMLVGVFVN 195 (511)
Q Consensus 169 v~~~-----~~~~f~~f~~~~lp~~ii~l~~~ 195 (511)
..+. .+++|.||++++.|..++++++.
T Consensus 377 ~~~~~~~~g~~~~~~~~~~~g~~~~i~~~~~~ 408 (413)
T cd01116 377 AAGIAEQHGYKISFWEFLKVGFPIMLVSLILA 408 (413)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 8742 13899999999999988876553
No 24
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=99.84 E-value=9.7e-18 Score=177.18 Aligned_cols=345 Identities=14% Similarity=0.131 Sum_probs=217.6
Q ss_pred HHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHH
Q 010427 57 AFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRG-AKDLLCRICFISALSSALF-TNDTCCVILTEFVLKIA 134 (511)
Q Consensus 57 a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~-~~~ll~~~~~~~~~lS~fl-sN~~t~~i~~Pi~~~ia 134 (511)
.++..++..+..+.--..++..++|+|..|++.+.+.+..++ +..+....+..+++++++. +|.++++++.|+.+.+.
T Consensus 31 ~~~~~~~~~l~ai~~Fi~~g~~l~~~G~~~~l~~~~~~~~g~~~~~~~~~~~~~~~l~g~l~Gs~~ataa~~~~~~iP~m 110 (405)
T TIGR00786 31 LFGGTDSFTLLAIPFFILAGNLMNRGGLARRLLNFAKALVGHLRGGLGHVNVLACALFAAVSGSSVATAAALGSLLIPAM 110 (405)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 345555555555555558889999999999999988877554 5566777888899999999 99999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHhhccCcccccccchh--hhc-cCCCccHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhhccc
Q 010427 135 RQNGVSPHPFLLALASSANVGSSATPIGNPQNL--VIA-LQSGISFGKFLLGI-LPSMLVGVFVNTLILLCMYWRILSVK 210 (511)
Q Consensus 135 ~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nl--iv~-~~~~~~f~~f~~~~-lp~~ii~l~~~~~~~~~~~~~~Lp~~ 210 (511)
++.|.||.. ..++.+..|+..+. .|+|. +++ .-.++++.|++..+ +|..+..+.. ..+.+++.+|.. +
T Consensus 111 ~~~g~~~~~---a~av~a~~~~~g~l--~Pp~~~~i~~a~~~~i~~~~~~~a~~~p~~l~~~~~-~~~~~~~~~~~~--~ 182 (405)
T TIGR00786 111 TKAGYPKAF---AAGVIAASGIIGPL--IPPSIVMIIYGVAAGVSIAKLFIAGILPGLLLALSL-MLTIWWVARRLG--Y 182 (405)
T ss_pred HHcCCCHHH---HHHHHHHHhccccc--cCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCC--C
Confidence 999999977 44444443333333 56555 443 34679999998744 4554443322 111222222110 0
Q ss_pred ccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccc
Q 010427 211 KDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIEL 290 (511)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (511)
++ .+ ++ + .++
T Consensus 183 -~~-------~~-------~~----------~-----------------------------------~~~---------- 192 (405)
T TIGR00786 183 -PR-------PP-------KA----------S-----------------------------------LRQ---------- 192 (405)
T ss_pred -CC-------CC-------cc----------C-----------------------------------HHH----------
Confidence 00 00 00 0 000
Q ss_pred cCCcccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHH---HH--HHhccCChHHHHhhcC--
Q 010427 291 GVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMG-LNMSWTALTAAL---VL--VVLDFKDAMPCLDKVS-- 362 (511)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~-l~~~~~al~~a~---~l--~~~~~~~~~~~~~~id-- 362 (511)
+ .+..++.+..+ .+.+..+.....| .++...+..++. +. +..++.+.+|..+.++
T Consensus 193 --------------~-~~~~~~~~~~l--~l~~~vi~~~~~g~~~~~~a~~~~~~~alli~~~~~~~~~~~~~~~~l~~~ 255 (405)
T TIGR00786 193 --------------R-LRAFRKSIWAL--LLPVLIIGGIFSGIFTPTEAAAVAAVYALALSTFVYRELTLKSLCDVLLES 255 (405)
T ss_pred --------------H-HHHHHHHHHHH--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 0 00001000111 1111122222334 444443333332 22 1235567778877777
Q ss_pred ----hhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccc
Q 010427 363 ----YSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAI 438 (511)
Q Consensus 363 ----w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~ 438 (511)
|.+++.+++...+...++++|+.+.+++.+..... +.....+++.++..+++.+++|+++..++.|++ ...++.
T Consensus 256 ~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~~~-~~~~~~~li~~~~~ilg~~~~~~a~~~i~~PI~-~p~a~~ 333 (405)
T TIGR00786 256 LRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANAIS-SPIVFLIMINILLLIVGMFMDLTPAILILTPIL-LPVAVH 333 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCCc-cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHHHH
Confidence 79999999999999999999999999999875421 111112233557778999999999999999954 566677
Q ss_pred cCcchhHHHHHHHHHHhhhcChhh-hhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHHH
Q 010427 439 SESEEKKAWLILAWVSTVAGNLSL-LGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~gg~lTp-iGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~ 508 (511)
.|.+|. .+.+.....+..|++|| +|...+ ++.+. +||+ ++|+.|.++|+.++.+++...+
T Consensus 334 ~Gv~p~-~~~~~~~~~~~~g~ltPPvg~~~~-~~~~~------~~~~--~~~~~k~~~p~~~~~~~~~~~~ 394 (405)
T TIGR00786 334 LGIDPV-HFGVMFVLNLEIGLLTPPVGTNLF-VASGV------AKMS--ITEVTRALWPFLLAQFLVLLLV 394 (405)
T ss_pred cCCChH-HHHHHHHHHHHHhcCCCCchHHHH-HHHHh------cCCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 788874 44555566677789997 985333 44553 5664 8999999999988777665443
No 25
>PRK15445 arsenical pump membrane protein; Provisional
Probab=99.84 E-value=7.9e-20 Score=194.34 Aligned_cols=187 Identities=22% Similarity=0.299 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHH----hcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHH
Q 010427 10 VLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMII----FKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMF 85 (511)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~----~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~ 85 (511)
..+.+++..+++.+.+ .+.++++.+.++++++.++.+ .|+++.+|+.++++|+++++++|+++++.++++||+.
T Consensus 224 ~~~~~~~~~~~~~~~~--~~~l~i~~~~va~~~a~ll~~~~~~~~~~~~~~~~~~v~W~~l~~~~g~~~l~~al~~tG~~ 301 (427)
T PRK15445 224 KLGWIVLALLLVGYFV--LEPLGIPVSAIAGVGALILLLVARRGHAINTKKVLKGAPWQIVIFSLGMYLVVYGLRNAGLT 301 (427)
T ss_pred HHHHHHHHHHHHHHHH--hhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHhCChHHHHHHHHHHHHHHHHHHcCHH
Confidence 3344444444443333 233345556778888877766 3789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCccccccc
Q 010427 86 KYLEIVLSWRSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNP 164 (511)
Q Consensus 86 ~~ia~~l~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p 164 (511)
+++++.+.+..+ ++......++++++++|+|+||+++++++ |+.+..+.+.|.+|.++++++++++|+||.+||+|+|
T Consensus 302 ~~la~~l~~~~~~~~~~~~~~~~~~s~~lS~~~sN~p~~~~~-~~~i~~~~~~~~~~~~l~~al~~ga~~gg~~T~iGs~ 380 (427)
T PRK15445 302 DYLAGVLNYLADQGLFAATLGTGFLAAFLSSVMNNMPTVLIG-ALAIDGSNATGVIKEAMIYANVIGSDLGPKITPIGSL 380 (427)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHhccCCcchHHHHHHHHHHhcccCcccchhhhH
Confidence 999998876544 45667778899999999999999999975 5555556667778889999999999999999999999
Q ss_pred chhhhc---cCC--CccHHHHHHhHHHHHHHHHHHHHHHH
Q 010427 165 QNLVIA---LQS--GISFGKFLLGILPSMLVGVFVNTLIL 199 (511)
Q Consensus 165 ~Nliv~---~~~--~~~f~~f~~~~lp~~ii~l~~~~~~~ 199 (511)
+|+++. +.+ +++|.||+|.|+|..++++++....+
T Consensus 381 an~i~~~~~~~~g~~i~f~~f~k~G~~~~~~~~~~~~~~l 420 (427)
T PRK15445 381 ATLLWLHVLAQKGVKISWGYYFKVGIIITLPVLLVTLLAL 420 (427)
T ss_pred HHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999764 333 36799999999999999888765443
No 26
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=99.84 E-value=1.9e-19 Score=188.48 Aligned_cols=163 Identities=23% Similarity=0.382 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhc-c-CchhHHHHHHHHHHH
Q 010427 35 RTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRS-R-GAKDLLCRICFISAL 112 (511)
Q Consensus 35 ~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~-~-~~~~ll~~~~~~~~~ 112 (511)
...+++.++.++.+.|..+++|+.++++|+++++++|++.++.+++++|+.+++++.+.+.. + +++..+..+++.+.+
T Consensus 213 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~w~~l~~~~~~~~l~~~l~~~Gl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ 292 (382)
T cd01115 213 VSVAIAIGAIVLVFGGVLLTKEDYKSIDWGIIFLFAGGIPLGKALESSGAAALIAEALISLLGGLPPFAILLLLCLLTLV 292 (382)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHcCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 44668888888889999999999999999999999999999999999999999999987643 3 456777788999999
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHHH
Q 010427 113 SSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGV 192 (511)
Q Consensus 113 lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l 192 (511)
+|.|+||++++.++.|++..++++.|.+|.++.+..++++|. +..||+|+|+|+++.+.+++++.||+|.++|..++++
T Consensus 293 ls~~~sn~~~~~i~~Pi~~~~~~~~g~~p~~~~~~~~~~~~~-~~~tp~~~~~n~i~~~~~~i~~~~~~~~~~p~~i~~~ 371 (382)
T cd01115 293 LTNFISNTATAVLLAPIALSIALSLGLPPEALLLAVAIGASC-AFMLPVGTPPNAIVLGPGGYKFSDFAKVGLPLSILSL 371 (382)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHcCccCCCCCeeeeCCCCccHHHHHHhCHHHHHHHH
Confidence 999999999999999999999999999999999999999997 6999999999999988889999999999999999888
Q ss_pred HHHHHH
Q 010427 193 FVNTLI 198 (511)
Q Consensus 193 ~~~~~~ 198 (511)
++...+
T Consensus 372 ~~~~~~ 377 (382)
T cd01115 372 VVSVTM 377 (382)
T ss_pred HHHHHH
Confidence 765443
No 27
>PLN00136 silicon transporter; Provisional
Probab=99.83 E-value=5.1e-20 Score=197.26 Aligned_cols=167 Identities=15% Similarity=0.186 Sum_probs=142.2
Q ss_pred CcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHH
Q 010427 333 LNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIIL 412 (511)
Q Consensus 333 l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ 412 (511)
++..+++++|+++++++++.+.+|+++.+||+++++++|+|+++.++++||+.+++++.+.+..+ +...-...+.++++
T Consensus 33 i~~~~~Allga~llll~g~~~~~~a~~~i~~~tl~ll~gmmii~~~L~~tG~~~~ia~~l~~~~~-~~~~ll~~l~~~ta 111 (482)
T PLN00136 33 IGRTAGALLSAVLMIVFHVISPDDAYASIDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQ-GGRDLLCRVCVVTA 111 (482)
T ss_pred ccHHHHHHHHHHHHHHhCCCCHHHHHHhCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 56777899999999999999999999999999999999999999999999999999999876532 22222344567889
Q ss_pred HHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhh
Q 010427 413 VLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLK 492 (511)
Q Consensus 413 ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k 492 (511)
++|+|++|++++++|.|+ ...+++..+.+|.+.++..+++++.||+.||+|+++|+++.+ .+|| +|.||+|
T Consensus 112 ~lSafl~N~~t~llm~Pi-v~~la~~~~~~p~~~ll~la~aAn~Gg~~TpiG~p~Nlii~~------~~~i--~F~dF~~ 182 (482)
T PLN00136 112 LASALFTNDTCCVVLTEF-VLELAAERNLPAKPFLLALASSANIGSSATPIGNPQNLVIAF------NSKI--TFPKFLL 182 (482)
T ss_pred HHHHHhccHHHHHHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHhhhhhhccccchheeeC------CCCC--CHHHHHH
Confidence 999999999999999994 466777778888777777899999999999999999999876 2455 6999999
Q ss_pred hhhHHHHHHHHHHHHHh
Q 010427 493 FGLPSTIVITAIGLALI 509 (511)
Q Consensus 493 ~G~plt~l~~iv~~~~i 509 (511)
.|+|.+++.+++++.++
T Consensus 183 ~~~P~~li~l~v~~~~l 199 (482)
T PLN00136 183 GILPAMLAGMAVNMVML 199 (482)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888776654
No 28
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=99.83 E-value=7e-19 Score=187.20 Aligned_cols=186 Identities=24% Similarity=0.288 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHH----HHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHH
Q 010427 10 VLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLM----IIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMF 85 (511)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l----~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~ 85 (511)
.++..+++.+.+++.+. +..|++....++.++.++ ...|+.+++|+.++++|+++++++|+|+++++++++|+.
T Consensus 225 ~~~~~v~~~~i~~~~~~--~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~f~l~~~l~~tG~~ 302 (429)
T TIGR00935 225 KKCWIVLVFLLVGFFVL--EFLGIPVSAIAWIAALGAIALAILADAIDTEKVLRGAPWQIVLFSAGMYLVVEGLKNLGLT 302 (429)
T ss_pred HHHHHHHHHHHHHHHHh--ccccCchHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCcHHHHHHHHHHHHHHHHHHCCHH
Confidence 45566666655555543 223444334445444322 236899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH--cCCCchHHHHHHHHHHhhccCccccc
Q 010427 86 KYLEIVLSWRSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQ--NGVSPHPFLLALASSANVGSSATPIG 162 (511)
Q Consensus 86 ~~ia~~l~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~--~~~~p~~~l~~~a~aan~Gg~~TpiG 162 (511)
+++++.+....+ ++...+..+.++++++|+|+||++ ++.|++..++++ .|.+|.++.+++++++|+||.+||+|
T Consensus 303 ~~la~~~~~~~~~~~~~~~~~~~~~~~~ls~~~sN~~---~~~pi~~~i~~~~~~g~~~~~~~~~l~~~~~~gg~~tp~g 379 (429)
T TIGR00935 303 EYLGGILNVLEDRGLWAAILGTGFVSAFLSSIMNNMP---TMLVGALSIDQSSATGLPKEPMVYANVIGADLGPKITPIG 379 (429)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHccHH---HHHHHHHHHhhccccccchhHHHHHHHHHHhcCcccCccc
Confidence 999995543333 345566678889999999999999 479999999875 47899999999999999999999999
Q ss_pred ccchhhhcc---CC--CccHHHHHHhHHHHHHHHHHHHHHHHH
Q 010427 163 NPQNLVIAL---QS--GISFGKFLLGILPSMLVGVFVNTLILL 200 (511)
Q Consensus 163 ~p~Nliv~~---~~--~~~f~~f~~~~lp~~ii~l~~~~~~~~ 200 (511)
+|+|+++.+ .. +++|.||+|.++|..++++++...+++
T Consensus 380 s~anli~~~~~~~~g~~~~~~df~k~g~~~~~~~~~i~~~~l~ 422 (429)
T TIGR00935 380 SLATLLWLHVLEQKGYKISWGYYFRTGIPMTIPVLFVTLAYLL 422 (429)
T ss_pred cHHHHHHHHHHHHCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998653 23 368999999999999998888765543
No 29
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=99.82 E-value=1.3e-18 Score=185.99 Aligned_cols=185 Identities=19% Similarity=0.188 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHHh-CChhHHHHHHHHHHHHHHHHHhcHHHHH
Q 010427 10 VLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAA-IDLSVLGLLFGTMVVSFYLERAGMFKYL 88 (511)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~-~~~~~i~~l~g~~~i~~~l~~tG~~~~i 88 (511)
...+.++...++.++.+. ..+++...+++.++.++.++|.++.+|+.+. ++|+++++++|++.++.+++++|+.+++
T Consensus 249 ~~~l~v~~~~i~~~~~~~--~~~~~~~~~al~~~~ll~~~g~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~sG~~~~i 326 (444)
T TIGR00785 249 KALLGIFLLALLLWIFGG--SLGINASVVALLAVVLMLFLGIVTWKDIQKNKVAWNTLILFGGLIGLAGGLKKSGFIKWF 326 (444)
T ss_pred HHHHHHHHHHHHHHHcCC--CCCCChHHHHHHHHHHHHHhCcccHHHHhhccCCcHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 345555555555555542 2245566789999999999999999999886 9999999999999999999999999999
Q ss_pred HHHHHHhcc--C-chhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccc
Q 010427 89 EIVLSWRSR--G-AKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQ 165 (511)
Q Consensus 89 a~~l~~~~~--~-~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~ 165 (511)
++.+....+ + +..++..+++.+.+++.|+||++++.++.|++..+|++.|.+|.++.+..++++|+||..||+|+|+
T Consensus 327 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~i~~Pi~~~ia~~~G~~p~~~~~~~~~~~~~~~~~tP~~s~~ 406 (444)
T TIGR00785 327 SEKLVGILDGLSPTIAVLVLVVLFYIILYFFASNTAHTAALVPIFFSVASAQGIPLELLALALALSASLMGFLTPYATPP 406 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 999876543 3 3444566778888999999999999999999999999999999999999999999998999999999
Q ss_pred hhhhccCCCccHHHHHHhHHHHHHHHHHHHH
Q 010427 166 NLVIALQSGISFGKFLLGILPSMLVGVFVNT 196 (511)
Q Consensus 166 Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~ 196 (511)
|.+.++.+++++.||+|.+.|..++.+++..
T Consensus 407 n~i~~~~g~~~~~~~~k~~~p~~l~~~~~~~ 437 (444)
T TIGR00785 407 NAIAYGSGYVKIKDMWRVGAIIGIVGLIVLL 437 (444)
T ss_pred cceeecCCCccHHHHHHhHHHHHHHHHHHHH
Confidence 9998888889999999999999988776643
No 30
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=99.79 E-value=6.9e-18 Score=180.66 Aligned_cols=165 Identities=21% Similarity=0.261 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccC--chhHHHHHHHHHH
Q 010427 34 GRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRG--AKDLLCRICFISA 111 (511)
Q Consensus 34 ~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~--~~~ll~~~~~~~~ 111 (511)
+-+.+++.+..++.++|+.+.+|+++.+||+++++++|++.++.+++|+|..+++++.+....++ +..+++.+++.+.
T Consensus 286 ~~~~~ali~~~~~~~~~vl~~~~~~~~i~W~~lilf~g~i~l~~~l~~tG~~~~i~~~l~~~~~~~~~~~il~~~~~~~~ 365 (461)
T COG0471 286 DATLIALIPVALLLLAGVLTWKEVYKKIDWGTLILFGGLIALGSALSKTGAIAWIAGLLAGSLGGLGPFAILLLLLLLTL 365 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhCCchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998765543 4566677888999
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHH
Q 010427 112 LSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVG 191 (511)
Q Consensus 112 ~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~ 191 (511)
+++.|+||++++..+.|+...++++.+.+|..+++..+++|++ +++||+|+|+|.++++.+++++.||.+.|+|..+++
T Consensus 366 ~~~~f~SntA~~~~m~Pi~~~ia~~l~~~p~~~~~~v~~~as~-~~~tpv~~~~n~iv~g~G~~k~~d~~~~G~~l~~v~ 444 (461)
T COG0471 366 VLTLFASNTATAIAMVPIAIALASALGGAPLLLLMLVAVSASG-GFLTPVGSPPNPIALGSGYVKFKDWWKVGFILSIVL 444 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhh-hhhcCCCCCCCceEECCCCccHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999997777777777775 899999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q 010427 192 VFVNTLIL 199 (511)
Q Consensus 192 l~~~~~~~ 199 (511)
+++...+.
T Consensus 445 ~iv~i~~~ 452 (461)
T COG0471 445 IIVLLVIG 452 (461)
T ss_pred HHHHHHHH
Confidence 88765543
No 31
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.78 E-value=5.1e-16 Score=162.84 Aligned_cols=154 Identities=16% Similarity=0.287 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHH-hcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHH
Q 010427 37 AGALLGAMLMII-FKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRS-RGAKDLLCRICFISALSS 114 (511)
Q Consensus 37 ~~al~~~~~l~~-~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~-~~~~~ll~~~~~~~~~lS 114 (511)
..+-+|...+.+ +|. +|.+ .++++++++.+++..++++++||..|++.+++.+.. +++++... +..+++.++
T Consensus 26 ~~gg~g~~il~~~~~~-~p~~----~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk~i~l-lap~vt~l~ 99 (443)
T PRK12489 26 LLGGIGLVILVFVFGL-PPGK----PPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPKYITI-LAPFVTYTL 99 (443)
T ss_pred HHHHHHHHHHHHHcCC-CCCC----CcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChhHHHH-HHHHHHHHH
Confidence 434555544443 354 4444 799999999999999999999999999999888764 46777776 566666777
Q ss_pred hhcchhh-HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc---cC----CCccHHHHHHhHHH
Q 010427 115 ALFTNDT-CCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA---LQ----SGISFGKFLLGILP 186 (511)
Q Consensus 115 ~flsN~~-t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~---~~----~~~~f~~f~~~~lp 186 (511)
+|++||+ ++..+.|++.++|++.|++|++.+.+.++++.+|..+||++..+|.++. +. .+++++|+...++|
T Consensus 100 afl~~Tg~~v~~~lPVi~~vA~k~gi~PsrpLa~as~As~lGi~aSpin~~v~~l~~~l~~~~~~~~g~~~f~il~VgIP 179 (443)
T PRK12489 100 TFLCGTGHVVYSILPIIYDVALKNGIRPERPMAAASVASQMGITASPVSAAVVSLVAMLGNVTGEGRHITLLDILAVTIP 179 (443)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 9999998 6999999999999999999999999999999999999999888887732 21 56899999999999
Q ss_pred HHHHHHHHHH
Q 010427 187 SMLVGVFVNT 196 (511)
Q Consensus 187 ~~ii~l~~~~ 196 (511)
..+++.++..
T Consensus 180 ~~~ig~l~~~ 189 (443)
T PRK12489 180 ATLIGVLAAA 189 (443)
T ss_pred HHHHHHHHHH
Confidence 9999877643
No 32
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=99.78 E-value=6.9e-18 Score=178.87 Aligned_cols=169 Identities=12% Similarity=0.127 Sum_probs=138.9
Q ss_pred CCcHHHHHHHHHHHHHHhccCChHHHHhh--cChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHH
Q 010427 332 GLNMSWTALTAALVLVVLDFKDAMPCLDK--VSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAI 409 (511)
Q Consensus 332 ~l~~~~~al~~a~~l~~~~~~~~~~~~~~--idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~ 409 (511)
++|.+.+++.++.+++++++.+.+|++++ +||+++++++|++.++.++++||+.+++++.+.+..+.++..-...+..
T Consensus 19 ~i~~~~~al~~~~ll~~~gv~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia~~l~~~~~~~~~~l~~~~~~ 98 (416)
T cd01118 19 GLPEAVWAVLGAVIALILGLVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVAALAARWARGSGRKLFTLIVL 98 (416)
T ss_pred CCChHHHHHHHHHHHHHHCCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 47999999999999999999999999987 6799999999999999999999999999999986654222223344566
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHhhccccCcch---hHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceee
Q 010427 410 IILVLSNVASNVPTVLLLGARVAASAGAISESEE---KKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLS 486 (511)
Q Consensus 410 ~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~---~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~ 486 (511)
++.++|.++||+++++++.|+ ...+++..+.+| ....+...+.++.|+++||+|+++|+++++. + +++
T Consensus 99 ~~~~ls~~~sn~a~~~~~~Pi-~~~i~~~~g~~~~~~~~~l~~~~~~a~~g~~~tpig~~~n~i~~~~------~--~i~ 169 (416)
T cd01118 99 LGAAVTAFFANDGTALILTPI-VIALLRALGAKKNRTLPFLYACAFIADAASLPLPISNLVNIVTAGY------F--GIG 169 (416)
T ss_pred HHHHHHHHHhhHHHHHHHHHH-HHHHHHHcCCCcccccHHHHHHHHHHcccccccccCCchHHHhHhc------c--CCC
Confidence 888999999999999999994 466777777776 4345556667788999999999999998762 2 357
Q ss_pred cchhhhhhhHHHHHHHHHHHHHh
Q 010427 487 FWTHLKFGLPSTIVITAIGLALI 509 (511)
Q Consensus 487 f~df~k~G~plt~l~~iv~~~~i 509 (511)
|.||+|.|+|.+++.+++...+.
T Consensus 170 ~~~~~~~~~p~~li~~~~~~~~~ 192 (416)
T cd01118 170 FTEYAALMFLPSIVSILATYVVL 192 (416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999887765443
No 33
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=99.78 E-value=4.5e-16 Score=164.27 Aligned_cols=165 Identities=16% Similarity=0.288 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHh-cCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHH
Q 010427 37 AGALLGAMLMIIF-KVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLCRICFISALSS 114 (511)
Q Consensus 37 ~~al~~~~~l~~~-g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~~~~~~~~~lS 114 (511)
..+-+|...+.+. | ++|.. .|+++++++++++...+.+++||.+|+..+++.++.+ ++++..+.+.++++++|
T Consensus 22 ~~g~~g~~~~~~~~~-~~~~~----~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~~~~llipii~~lfs 96 (430)
T TIGR00770 22 YAGGLGVLILCFGFG-LKPGK----IPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPKYITILAPSVTYFLT 96 (430)
T ss_pred HHHHHHHHHHHHHcC-CCCCC----CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcchhhhhHHHHHHHHH
Confidence 3345555555443 4 34433 8999999999999999999999999999998776644 57777788889999999
Q ss_pred hhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc--CCCccHHHHHHhHHHHHHHHH
Q 010427 115 ALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL--QSGISFGKFLLGILPSMLVGV 192 (511)
Q Consensus 115 ~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~--~~~~~f~~f~~~~lp~~ii~l 192 (511)
.+.+|+.++..+.|+...+|+++|+||.+.+....+++|+|+.+||+|+|+|..+.. ..+++|.|++....|..++.+
T Consensus 97 ~~~g~~~~~l~f~PI~i~la~~lG~d~i~~~ai~~~aa~iG~~as~in~~~~~~ig~~~~~Gi~f~~~l~~rip~~~v~l 176 (430)
T TIGR00770 97 ILAGTGHVVYSTLPVIAEVAKEQGIKPERPLSLAVVSSQIAITASPVSAAVVFMSAILEPLGIEYLDLLMVTIPSTFLGC 176 (430)
T ss_pred HHhchHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887777643 347999999999999988887
Q ss_pred HHHHHHHHHHHHHhh
Q 010427 193 FVNTLILLCMYWRIL 207 (511)
Q Consensus 193 ~~~~~~~~~~~~~~L 207 (511)
++...+. +.|.|.+
T Consensus 177 ~v~~~~v-~~y~~kv 190 (430)
T TIGR00770 177 MLTAFFV-NFFGKKL 190 (430)
T ss_pred HHHHHHH-HHHHHhc
Confidence 7754432 3334444
No 34
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.78 E-value=1e-17 Score=180.37 Aligned_cols=195 Identities=22% Similarity=0.285 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHH-HhCChhHHHHHHHHHHHHHHHHHhcHHHHH
Q 010427 10 VLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAF-AAIDLSVLGLLFGTMVVSFYLERAGMFKYL 88 (511)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~-~~~~~~~i~~l~g~~~i~~~l~~tG~~~~i 88 (511)
.+.+.+++++.++.+++... +++...++++++.++.+.|+++.||.. ++++|+++++++|.+.++.+++++|+.+|+
T Consensus 269 k~~~~i~~~~i~lw~~~~~~--~i~~~~va~~~~~ll~~~~il~~~d~~~~~i~W~~l~~~~g~~~lg~~l~~sG~~~~l 346 (471)
T PF00939_consen 269 KKVLVIFLLTILLWITESFH--GIDPAIVALLGAVLLFLPGILTWKDAAQKKIPWGTLFLFGGALSLGTALEKSGAAKWL 346 (471)
T ss_pred hhhhhhhhhhhhcccCcccC--CCCHHHHHHHHHHHHHHHHhccHHHHHhcCCCchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34455555566666664433 356668899999999999999999854 689999999999999999999999999999
Q ss_pred HHHHHHhcc--CchhHHHH-HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHhhccCccccccc
Q 010427 89 EIVLSWRSR--GAKDLLCR-ICFISALSSALFTNDTCCVILTEFVLKIARQN-GVSPHPFLLALASSANVGSSATPIGNP 164 (511)
Q Consensus 89 a~~l~~~~~--~~~~ll~~-~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~-~~~p~~~l~~~a~aan~Gg~~TpiG~p 164 (511)
++.+....+ ++...+.. +.....+.+.|.||++++.++.|++++++.+. |.+|....++++++++.++..+|+++|
T Consensus 347 a~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~s~~a~~~il~Pi~~~~a~~~~g~~p~~~~l~~~~~~~~~~~~lP~~sp 426 (471)
T PF00939_consen 347 ANVLLPLLGGLSPFLVVLVILLVTVLLLTNFMSNTATVAILIPIVISLAAALGGINPLALALIVAFASSFAGFLLPYSSP 426 (471)
T ss_pred HHHHHHHccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHhhhccccCCcCCc
Confidence 999876544 34443333 44445567899999999999999999999999 999999999999999987799999999
Q ss_pred chhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010427 165 QNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRIL 207 (511)
Q Consensus 165 ~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~L 207 (511)
+|.+.++.++++..||.|.|+|..+++.++... +...+|+.+
T Consensus 427 ~~~i~~~~g~~~~~d~~k~G~~~~ii~~iv~~~-~~~~~w~~i 468 (471)
T PF00939_consen 427 PNAIAYGTGYYKFKDFIKYGFPLTIIAIIVIIL-VAYPYWKLI 468 (471)
T ss_pred ceeEEEcCCCCCHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999888776543 334567665
No 35
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.7e-17 Score=173.74 Aligned_cols=186 Identities=28% Similarity=0.397 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHH----HHHhCChhHHHHHHHHHHHHHHHHHhcH
Q 010427 9 VVLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEE----AFAAIDLSVLGLLFGTMVVSFYLERAGM 84 (511)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~----a~~~~~~~~i~~l~g~~~i~~~l~~tG~ 84 (511)
..++..+++.+++.+.. .+.++++.+.+++.++..+++....+++| ++++.+|+++++++||++++.+++++|+
T Consensus 224 ~~~~~~vl~~vli~f~~--~~~~~i~~~~val~~a~ill~~~~~~~~~~~~~il~~v~W~~l~Ff~Glfi~V~gl~~~Gv 301 (424)
T COG1055 224 FKLSLVVLALVLIAFLL--LPFLGIPVSLVALVGAAILLLLARLSPRESVNKILRGVEWSTLLFFIGLFIVVGGLENAGV 301 (424)
T ss_pred HHHHHHHHHHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHhccCcchhHHHhhhcCChHHHHHHHHHHHHHHHHHHcCh
Confidence 34455555555555554 45667777888999998888877788888 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccc
Q 010427 85 FKYLEIVLSWRSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGN 163 (511)
Q Consensus 85 ~~~ia~~l~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~ 163 (511)
.+.+++.+....+ +...-...+.++++++|+++||.++++++.|.+.+........ .+++++.+++|++||..||+|+
T Consensus 302 ~~~la~~l~~~~~~~~~~~~~~~~~~s~~lSsv~~NvP~vl~~~~~i~~~~~~~~~~-~~lw~A~a~Ga~lGgnlT~IGs 380 (424)
T COG1055 302 TEDLASVLKALSSGGLAAATLGIGWLSGLLSSVLDNVPTVLTFAPIIKGLAANGMGK-EPLWLALALGADLGGNLTPIGS 380 (424)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccccch-HHHHHHHHHhCccccchhhhhh
Confidence 9999999876655 4677788899999999999999999999999998877654443 6899999999999999999999
Q ss_pred cchhhhcc-----CCCccHHHHHHhHHHHHHHHHHHHHH
Q 010427 164 PQNLVIAL-----QSGISFGKFLLGILPSMLVGVFVNTL 197 (511)
Q Consensus 164 p~Nliv~~-----~~~~~f~~f~~~~lp~~ii~l~~~~~ 197 (511)
.+|+++.+ ..+++|.+|+|.+.|..+..+++...
T Consensus 381 ~Anlv~~~i~~~~g~~is~~~f~k~g~~i~~~~l~i~~~ 419 (424)
T COG1055 381 AANLVWLGVLERKGVPISFGEFFKVGIIVTLPSLFITLL 419 (424)
T ss_pred HHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999863 23589999999999998887776543
No 36
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=99.76 E-value=5.1e-17 Score=171.72 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=139.9
Q ss_pred hhHHHHHHHHHHHHHhc---CCChHHHHHh-----CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHH
Q 010427 34 GRTAGALLGAMLMIIFK---VITPEEAFAA-----IDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCR 105 (511)
Q Consensus 34 ~~~~~al~~~~~l~~~g---~~~~~~a~~~-----~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~ 105 (511)
+...+++.|+.++++.+ ..+++++++. ++|+++ +.|+|+++++++++|+++.+++.+....++.. ...
T Consensus 319 ~~a~VaLiga~vill~~~~~~~~~e~~l~~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~~~~~~~~~~~~--~~~ 394 (513)
T PRK09547 319 HLAEVGLIGLSVIILATAFTGVTDEHAIGKAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPIIQFVLQASEHAQ--LSL 394 (513)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCHHHHHhhCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCh--HHH
Confidence 45678999998777776 5889999988 999999 99999999999999999999999887765433 666
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCC-Cc---hHHHHHHHHHHhhccCcccccccchhhhc-c---C-CCcc
Q 010427 106 ICFISALSSALFTNDTCCVILTEFVLKIARQNGV-SP---HPFLLALASSANVGSSATPIGNPQNLVIA-L---Q-SGIS 176 (511)
Q Consensus 106 ~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~-~p---~~~l~~~a~aan~Gg~~TpiG~p~Nliv~-~---~-~~~~ 176 (511)
+.+.++++|+++||++.+++++|++.++. +.|. ++ .++.++++.++|+||.+||+|..+|+++. + . .++|
T Consensus 395 ~~~~sgllSaiiDNVp~~~~~ip~v~~~~-~~g~~~~~~~~~L~~ALa~Ga~Lggn~T~iGasAnlv~~~~~~~~g~~is 473 (513)
T PRK09547 395 FYIANGLLSSISDNVFVGTVYINEAKAAL-ESGAISRKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLS 473 (513)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHH-hcCCCccccchHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHhCCCccc
Confidence 78999999999999999999999999998 7776 33 58999999999999999999999999887 3 2 3589
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 010427 177 FGKFLLGILPSMLVGVFVNTLIL 199 (511)
Q Consensus 177 f~~f~~~~lp~~ii~l~~~~~~~ 199 (511)
|.||.|.++|..++..++..+++
T Consensus 474 f~~~~k~glP~tlv~~~v~~~~v 496 (513)
T PRK09547 474 YGRMVWMALPYTIVLTLVGLLAV 496 (513)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999888765543
No 37
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=99.71 E-value=1.8e-16 Score=166.21 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=136.2
Q ss_pred CcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHH
Q 010427 333 LNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIIL 412 (511)
Q Consensus 333 l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ 412 (511)
.|..++++.++.+++++++.+.+|+++++||+++++++|+++++.+++++|+.+++++.+....+ +...-...+++++.
T Consensus 11 ~~~~~~a~~~~~ll~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~-~~~~l~~~~~~~~~ 89 (384)
T cd01117 11 LDRWAIALLGAALMLLFGVISLEDAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAG-SPRRLLFLLVLLSG 89 (384)
T ss_pred CCHHHHHHHHHHHHHHhCCCCHHHHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 56777888888888888999999999999999999999999999999999999999999765432 22222234566888
Q ss_pred HHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhh
Q 010427 413 VLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLK 492 (511)
Q Consensus 413 ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k 492 (511)
++|.++||.++++++.|+ ....++..+.++....+..+++++.||..||+|+++|++..+. ++ ++|.||+|
T Consensus 90 ~ls~~~~n~~~~~~~~Pi-~~~l~~~~~~~~~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~------~~--i~~~~~~~ 160 (384)
T cd01117 90 ILSALLTNDTACLVFTPI-VLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASE------SG--ISFPFFLA 160 (384)
T ss_pred HHHHHHhhHHHHHHHHHH-HHHHHHHcCCCchhHHHHHHHHHHcccccccCCCchhhhhhcC------CC--CCHHHHHH
Confidence 999999999999999994 4667766677776666667777888999999999999998762 33 57999999
Q ss_pred hhhHHHHHHHHHHHHH
Q 010427 493 FGLPSTIVITAIGLAL 508 (511)
Q Consensus 493 ~G~plt~l~~iv~~~~ 508 (511)
.|+|.+++.+++...+
T Consensus 161 ~~~p~~i~~~~~~~~~ 176 (384)
T cd01117 161 AMAPLALLGLLLLLIL 176 (384)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 9999999887766544
No 38
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.6e-16 Score=161.54 Aligned_cols=164 Identities=23% Similarity=0.327 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHH-HhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhc---c-Cchh--HHHHHH
Q 010427 35 RTAGALLGAMLMI-IFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRS---R-GAKD--LLCRIC 107 (511)
Q Consensus 35 ~~~~al~~~~~l~-~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~---~-~~~~--ll~~~~ 107 (511)
..++|++|+.+++ +....|.+...+.++|.+++|+++||++.++++|.|+++|+++...... + +.+. .++.+.
T Consensus 497 LgW~AIlgA~llLIl~d~~D~e~il~rVews~LLFfaalFI~~e~v~~lGli~~l~dlte~vil~v~e~~~~~vAi~iil 576 (685)
T KOG2639|consen 497 LGWTAILGAILLLILADIKDIEAILHRVEWSTLLFFAALFILMEAVDKLGLIEWLGDLTEPVILSVGESYRLMVAIVIIL 576 (685)
T ss_pred ccHHHHHHHHHHHHHhchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhHHhhhcchhhhhHHHHHHHH
Confidence 3477899875554 4456666667788999999999999999999999999999998544322 2 2232 334577
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHH--cCCCchHHHHHHHHHHhhccCcccccccchhhhcc-----CCCccHHHH
Q 010427 108 FISALSSALFTNDTCCVILTEFVLKIARQ--NGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL-----QSGISFGKF 180 (511)
Q Consensus 108 ~~~~~lS~flsN~~t~~i~~Pi~~~ia~~--~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-----~~~~~f~~f 180 (511)
+.+++.|+|++|.+.+.+|+++..++.++ .|.+..|+.++++++|+.||..|++|..+|++.++ .++++|.+|
T Consensus 577 w~SAlasafidNipvt~~mVkl~~~lv~~~~~glpl~pliWaL~~ga~~gGNgTLiGasANvv~A~iAeqHGYkltF~~f 656 (685)
T KOG2639|consen 577 WVSALASAFIDNIPVTAIMVKLLTSLVANSAVGLPLQPLIWALALGACLGGNGTLIGASANVVAAGIAEQHGYKLTFTQF 656 (685)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHhhccccCCCcchHHHHHHhhhhhcCCceeechhhHHHHHHHHHHcCceEEehhH
Confidence 89999999999999999999999999765 68888899999999999999999999999999863 235799999
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 010427 181 LLGILPSMLVGVFVNTLI 198 (511)
Q Consensus 181 ~~~~lp~~ii~l~~~~~~ 198 (511)
++.|+|..+.+..+..++
T Consensus 657 F~~GfPmml~si~i~t~y 674 (685)
T KOG2639|consen 657 FKVGFPMMLGSITIGTVY 674 (685)
T ss_pred HHhcccHHHHHHHHHHHH
Confidence 999999988877665443
No 39
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.66 E-value=3.1e-15 Score=155.04 Aligned_cols=170 Identities=19% Similarity=0.275 Sum_probs=139.6
Q ss_pred HhCCcHHHHHHHHHHHHHHh-----ccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhH
Q 010427 330 LMGLNMSWTALTAALVLVVL-----DFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGI 404 (511)
Q Consensus 330 ~~~l~~~~~al~~a~~l~~~-----~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~ 404 (511)
..+.++...+..++.++... +..+.+|.++.+||++++++.|++. +.++++||..|++++.+.+..+.++..-.
T Consensus 15 ~~~~~~~~~~~~~a~~~~l~g~~~~~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~~~~~l~ 93 (351)
T PF03600_consen 15 RKKIPVVAAALLGALLVALFGFPGFGVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGGKPWRLL 93 (351)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhccccccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCCCHHHHH
Confidence 34577777777788877777 7788899999999999999999999 99999999999999999876543222233
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCce
Q 010427 405 SILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYT 484 (511)
Q Consensus 405 ~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~ 484 (511)
..++.++.++|.+.||+++++++.| +....++..+.++.+..+.++++++.||..||+|+++|+++.+. .+++
T Consensus 94 ~~~~~~~~~lS~~~~N~~~v~~~~P-i~~~~~~~~~i~~~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~~------~~~~ 166 (351)
T PF03600_consen 94 LLLMLVTALLSAFLDNTTVVLIMIP-IVLSLARKLGIPPSPLLMPLAFAANIGGMLTPIGNPTNLIIANA------SGLP 166 (351)
T ss_pred HHHHHHHHHHHHhhhcchHHHhhHH-HHHHHHHHcCCChHHHHHHHHHHhccccccCcCCCcchhhhhhh------cccc
Confidence 4556788999999999999999999 45677877888887777778888999999999999999998552 4665
Q ss_pred eecchhhhhhhHHHHHHHHHHHH
Q 010427 485 LSFWTHLKFGLPSTIVITAIGLA 507 (511)
Q Consensus 485 i~f~df~k~G~plt~l~~iv~~~ 507 (511)
+...||++.++|..++.+++...
T Consensus 167 ~~~~~~~~~~~p~~i~~~~~~~~ 189 (351)
T PF03600_consen 167 FFGFDFFALGLPAVIVGLLVLIF 189 (351)
T ss_pred cchhhhHhhhHHHHHHHHHHHHH
Confidence 33399999999999887776543
No 40
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=99.65 E-value=9.7e-16 Score=161.18 Aligned_cols=167 Identities=25% Similarity=0.343 Sum_probs=137.3
Q ss_pred CcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHH
Q 010427 333 LNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIIL 412 (511)
Q Consensus 333 l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ 412 (511)
+|.+++++.++.++++++..+.+|++++++|+++++++|++.++.++++||+.+++++.+.+..+.+.. ....+..++.
T Consensus 9 ~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~~-~~~~~~~~~~ 87 (396)
T cd00625 9 LPRAVVALLGAVLLVLLGVVSPKEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSRR-LLLLLMLLTA 87 (396)
T ss_pred CCHHHHHHHHHHHHHHhcCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCch-HHHHHHHHHH
Confidence 688999999999888899999999999999999999999999999999999999999999655432222 2344556778
Q ss_pred HHHHhhchHHHHHHHHHHHHHhhccccCcch-hHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhh
Q 010427 413 VLSNVASNVPTVLLLGARVAASAGAISESEE-KKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHL 491 (511)
Q Consensus 413 ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~-~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~ 491 (511)
++|+++||++++.++.|+. ...++..+.++ ....+..+++++.||+.||+|+++|+++.+. ++ ++|.||+
T Consensus 88 ~ls~~~s~~~~~~il~Pi~-~~~~~~~g~~~~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~~------~~--i~~~~~~ 158 (396)
T cd00625 88 ALSAFFSNDATAVLLTPIV-LALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIASL------SG--LGFLDFL 158 (396)
T ss_pred HHHHHHhchhhhhhhHHHH-HHHHHHhCCCCCccHHHHHHHHHhccccccccCCCCceEEEeC------CC--CCHHHHH
Confidence 9999999999999999954 56666667776 5456667777888999999999999998761 23 4699999
Q ss_pred hhhhHHHHHHHHHHHHHh
Q 010427 492 KFGLPSTIVITAIGLALI 509 (511)
Q Consensus 492 k~G~plt~l~~iv~~~~i 509 (511)
|.|.|.+++..++...++
T Consensus 159 ~~~~~~~i~~~~~~~~~~ 176 (396)
T cd00625 159 AFMAPPALGLLLLLLGLL 176 (396)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 999999998877665543
No 41
>PLN00137 NHAD transporter family protein; Provisional
Probab=99.57 E-value=6.9e-14 Score=147.95 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=119.0
Q ss_pred chhHHHHHHHHHHHHHh-----------cCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchh
Q 010427 33 IGRTAGALLGAMLMIIF-----------KVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKD 101 (511)
Q Consensus 33 i~~~~~al~~~~~l~~~-----------g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ 101 (511)
++...+++.++.++++. |..+++|+++.+||++++++.|+|+++++++++|+.+++++.+....+++.
T Consensus 248 l~~~~~al~~~~~lll~~~~~~~~~~~~~~~~~~~~l~~Vdw~tLlfF~GlFilvgal~~tG~~~~la~~l~~~~~~~~- 326 (424)
T PLN00137 248 LPPYMGMLLGLGVLWILTDAIHYGESERQALKVPQALSRIDTQGILFFLGILLSVGSLDAAGILRELANYLDANIPNVE- 326 (424)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHhCCccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCch-
Confidence 33446677777655553 347889999999999999999999999999999999999998865443322
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHH
Q 010427 102 LLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVS-PHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKF 180 (511)
Q Consensus 102 ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~-p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f 180 (511)
.+.+.++++|+++||.+.++.+.|+.. ..+.+ ..+.++++++++|+||..|++|+.+|+++++..+-.|.-+
T Consensus 327 ---~i~~~s~ilS~~IsNVP~~~~~~p~~~----~~~~~~~~~~w~aLalga~lGGn~tliGS~Anvi~~~~~~~~~~~~ 399 (424)
T PLN00137 327 ---LIASAIGVASAIIDNVPLVAATMGMYD----LTDYPMDSELWQLIALCAGTGGSLLVIGSAAGVAFMGMEKVDFFWY 399 (424)
T ss_pred ---hHHHHHHHHHHHhcchHHHHHHhhhhh----hccCCcchHHHHHHHHHhCccchHHHHHHHHHHHHHHHhhhhhhhh
Confidence 267888999999999999999999986 23333 2578999999999999999999999999886443333323
Q ss_pred HHhHHHHHHHHHHHH
Q 010427 181 LLGILPSMLVGVFVN 195 (511)
Q Consensus 181 ~~~~lp~~ii~l~~~ 195 (511)
.+..-|..++|....
T Consensus 400 ~~~~~~~~~~~~~~~ 414 (424)
T PLN00137 400 LRKVSGFAFAGYVAG 414 (424)
T ss_pred hhhhhHHHHHHHHHH
Confidence 333445566665543
No 42
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=99.55 E-value=1.1e-13 Score=146.49 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=119.3
Q ss_pred cchhHHHHHHHHHHHHHhc------------CCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCc
Q 010427 32 PIGRTAGALLGAMLMIIFK------------VITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGA 99 (511)
Q Consensus 32 ~i~~~~~al~~~~~l~~~g------------~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~ 99 (511)
.++...+++.++.++++++ ..+++|+++.+||+++++++|+|+++++++++|+.+.+++.+....++.
T Consensus 242 ~l~~~~~al~~~~~lll~~~~l~~~~~~~~~~~~~~~~l~~VDw~tLlfF~GlFilvg~l~~~G~l~~la~~l~~~~~~~ 321 (420)
T TIGR00775 242 GFPPFMGALLGLGLVWLFSDWIHSPHGEKRLHLRVPHILTRIDISSLTFFIGILLAVNALSLLGYLEDVSNVMDTQFSRN 321 (420)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhccccccccccCHHHHHHhCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 3445577888887777765 3557899999999999999999999999999999999999886443322
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHH
Q 010427 100 KDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGK 179 (511)
Q Consensus 100 ~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~ 179 (511)
. . .+.++++|+++||.+.++.+.|+.-. +. ..+.++++++++|+||..|++|+.+|+++.+..+.+|.-
T Consensus 322 ~-~----~~~s~i~S~~IdNVP~va~~i~l~~~-----~~-~~~~w~aLalga~lGGn~tlIGS~Anvv~~~~~~~~~~~ 390 (420)
T TIGR00775 322 W-A----AVMVGLLSSVLDNVPLVAATLGMYPL-----PM-SDGLWKLIAYTAGTGGSILIIGSAAGVALMGAEKVQFTW 390 (420)
T ss_pred h-H----HHHHHHHHHHhccHHHHHHHHHhccc-----cC-chHHHHHHHHHHCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 66778999999999999999998644 11 457899999999999999999999999877666666664
Q ss_pred HHHhHHHHHHHHHHHH
Q 010427 180 FLLGILPSMLVGVFVN 195 (511)
Q Consensus 180 f~~~~lp~~ii~l~~~ 195 (511)
|++..=+..+++....
T Consensus 391 ~~~~~~~~~~~~~~~~ 406 (420)
T TIGR00775 391 YFKHLSWIALASYFGG 406 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4443333455555443
No 43
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=99.54 E-value=1.3e-10 Score=123.55 Aligned_cols=344 Identities=13% Similarity=0.113 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHH---HhccCchhHHHHHHHHHHHHHhhcchhhHH-HHHHHHHHHHHHHcCCCc
Q 010427 66 LGLLFGTMVVSFYLERAGMFKYLEIVLS---WRSRGAKDLLCRICFISALSSALFTNDTCC-VILTEFVLKIARQNGVSP 141 (511)
Q Consensus 66 i~~l~g~~~i~~~l~~tG~~~~ia~~l~---~~~~~~~~ll~~~~~~~~~lS~flsN~~t~-~i~~Pi~~~ia~~~~~~p 141 (511)
-..++..+..+..++++|.-+.+.+... ++.++|+.++...++++.++|.++.|.... +.+.-+.+.+.++.|++|
T Consensus 80 Gl~Im~~~gFa~yM~~iGa~~~lv~l~~~pl~~ir~p~~~l~~~~l~~~~~~~~i~Sa~glg~~lm~~l~Pvl~~~Gv~~ 159 (455)
T PRK10654 80 GMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISR 159 (455)
T ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3456777778899999999999988655 344567777778888999999888877765 345555667788899987
Q ss_pred hHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccC
Q 010427 142 HPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLL-GILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAED 220 (511)
Q Consensus 142 ~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~-~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~ 220 (511)
. . -.-..++..|...+|..+.+| +..+..|.+..||+. .-+|..+..+++..+ .. ++|....+|+++.. +
T Consensus 160 ~-~-aa~v~~~~~g~~~~P~s~~~~-laA~~~g~~~~~~~~~~~~p~~i~~~i~~~i-~~-~~~~~~~dkk~~~~----~ 230 (455)
T PRK10654 160 G-A-AAAICASPAAIILSPTSGDVV-LAAEASEMPLIDFAFKTTLPISIAAIIGMAI-AH-FFWQRYLDKKENIS----H 230 (455)
T ss_pred H-H-HHHHHHHHhcccCCCCcchHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HH-HHHhHHHHhhcccc----c
Confidence 5 2 222477777888999877775 445666788888876 457777776655332 22 33433322222100 0
Q ss_pred CCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCccccccc
Q 010427 221 DDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGK 300 (511)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
++ + + . +
T Consensus 231 ~~--~-----~-------~--~---------------------------------------------------------- 236 (455)
T PRK10654 231 EM--L-----D-------V--S---------------------------------------------------------- 236 (455)
T ss_pred cc--c-----c-------c--c----------------------------------------------------------
Confidence 00 0 0 0 0
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHHhCCcHHHHH------HHHHHHHHHhccCChHHHHhhcCh----------h
Q 010427 301 KDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTA------LTAALVLVVLDFKDAMPCLDKVSY----------S 364 (511)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~a------l~~a~~l~~~~~~~~~~~~~~idw----------~ 364 (511)
+.++..+.+.-. .++.-++++ ++.....+...++.. +++++.-. .++++.||.++.+++ +
T Consensus 237 ~~~~~~p~~yal--lPllPLill-l~f~~~~~~~~~v~~~~~~s~~i~~~~~~-~r~~~~k~v~~~l~~~~~GMg~~~a~ 312 (455)
T PRK10654 237 EITTTAPAFYAI--LPFTPIIGV-LIFDGKWGPQLHIITILVICMLLAAVLEF-LRSFNTKKVFSGLEVAYRGMADAFAG 312 (455)
T ss_pred hhccccccHHHH--HHHHHHHHH-HHHhcccchhhhHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHhhhhHH
Confidence 000001112111 122111111 111111122222222 22333333 377889999988888 5
Q ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhccccCcch
Q 010427 365 LLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA-SNVPTVLLLGARVAASAGAISESEE 443 (511)
Q Consensus 365 ~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i-sN~a~~~l~~P~i~~~~a~~~~~~~ 443 (511)
+..++.+.-+++.+++.+|+.+.+.+.+..... +...-..++..++.+.+..+ ||.++...+.| +....+...|.||
T Consensus 313 Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~lg~-~~~~illv~~il~~l~~~~~GSg~a~~~af~p-i~~pia~~lG~~p 390 (455)
T PRK10654 313 VVMLLVAAGVFAQGLSTIGFIQSLISLATSFGS-AGIILMLVLVILTMLAAITTGSGNAPFYAFVE-LIPKLAHSSGINP 390 (455)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHccchHHHHHHHHH-HHHHHHHHcCCCH
Confidence 889999999999999999999999998876532 22112233345666678888 99999999999 4467777889988
Q ss_pred hHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHH
Q 010427 444 KKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLA 507 (511)
Q Consensus 444 ~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~ 507 (511)
...-......++.|.+..|++. ++++... -+|| +..|+.|.+.+..++.+++...
T Consensus 391 v~~~~~~~~~~~~G~~~sPvs~--~ii~~ag-----~a~~--~~~~ivKrt~ip~ii~~iv~~i 445 (455)
T PRK10654 391 AYLTIPMLQASNLGRTISPVSG--VVVAVAG-----MAKI--SPFEVVKRTSVPVLVGLLIVIV 445 (455)
T ss_pred HHHHHHHHHHHHHhCcCCcchh--hHhhhhc-----ccCC--CHHHHHHhhhHHHHHHHHHHHH
Confidence 6444445666777778888764 3443321 2566 5899999988777777776653
No 44
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=99.46 E-value=1.5e-13 Score=145.59 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=128.9
Q ss_pred CChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 010427 52 ITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLCRICFISALSSALFTNDTCCVILTEFV 130 (511)
Q Consensus 52 ~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~ 130 (511)
.+.++.-+.+.|+.+++++|.+.++.+.+++|+.++|++.+....+ +.+.+.+.++++..+++.|.||++++.+++|++
T Consensus 422 ~~w~~~q~~fPWsIvlLlgGGfALakgv~sSGLs~~I~~~L~~l~~~p~~~i~li~~ll~~v~TeF~Sntata~IfiPIl 501 (586)
T KOG1281|consen 422 GLWKTVQFTFPWSIVLLLGGGFALAKGVSSSGLSSLIGNALKPLESLPVFAILLIFSLLILVVTEFVSNTATASIFIPIL 501 (586)
T ss_pred cchhhhcccCCchHhhhhccchhhhhhcccccHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHhcchhheeehHHhH
Confidence 3445544579999999999999999999999999999999887443 457777888999999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHHHHHHHH
Q 010427 131 LKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTL 197 (511)
Q Consensus 131 ~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~ 197 (511)
.+++++++..|..+++|.++++++ ++..|+++|||.++.+.++..-.|+.+.|+.+.+.+.+....
T Consensus 502 ~ela~~l~~hplyl~lp~tl~~Sf-Af~LPvstpPNaivfs~~~~k~~dm~~~G~~l~i~~~a~l~~ 567 (586)
T KOG1281|consen 502 AELAEALGIHPLYLMLPTTLACSF-AFMLPVSTPPNAIVFSMGDIKGKDMLKVGLFLNIGGPAILLL 567 (586)
T ss_pred HHHHHhcCCCCceeehhHHHHHHH-HHhcCCCCCCCeEEEeecccchhhHhhhccchhHHHHHHHHH
Confidence 999999999999999999999998 699999999999999999999999999998887776665433
No 45
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=99.45 E-value=3.4e-10 Score=118.63 Aligned_cols=348 Identities=11% Similarity=0.090 Sum_probs=210.7
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHhhcchhhHH-HHHHHHH
Q 010427 55 EEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRS---RGAKDLLCRICFISALSSALFTNDTCC-VILTEFV 130 (511)
Q Consensus 55 ~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~---~~~~~ll~~~~~~~~~lS~flsN~~t~-~i~~Pi~ 130 (511)
++.+++--.++-..+...+.-...++++|.+|.+.+.+.|.. +++..++....+++.+++-..+..++. ++.+|..
T Consensus 12 ~~~~~~~~~~~g~~i~~~~gf~~~M~~~G~~~~lv~~~~k~~~~~~~p~~v~~~t~~i~~~~~l~~~sat~~~li~~~~l 91 (388)
T TIGR00771 12 LRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTL 91 (388)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 344455556677777777888899999999999999887654 467888888999999999999999998 8999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010427 131 LKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGK-FLLGILPSMLVGVFVNTLILLCMYWRILSV 209 (511)
Q Consensus 131 ~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~-f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~ 209 (511)
+.+-++.|++|.... ...+++.+-..+|-|.+++ ......+.+..| |+...+|..+.++++... .. +++++-.+
T Consensus 92 ~P~l~~~G~~~~~aa--avia~~~~l~i~P~~~~~~-~aa~~~~~~~~~~~~~~~ip~~i~~i~~~~~-~~-~~~~k~~~ 166 (388)
T TIGR00771 92 FPTLVSLGVSRLSAV--AVMASPGSIHSAMISEMSG-LAAQQVNMSHAPYNFHYMLPGAIGAIILTAI-AH-FFKQRGED 166 (388)
T ss_pred HHHHHHcCCCHHHHH--HHHHhhhcccCCCcchHHH-HHHHHhCCCHHHHHHHhHHHHHHHHHHHHHH-HH-HHHhcccc
Confidence 999999999976544 2333333346777777654 333346789999 556677887777665433 22 22222221
Q ss_pred cccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhcccc
Q 010427 210 KKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIE 289 (511)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (511)
|++. ..++++ .+
T Consensus 167 kr~~---~~~~~~----------------~~------------------------------------------------- 178 (388)
T TIGR00771 167 KKQA---YIAHEK----------------ES------------------------------------------------- 178 (388)
T ss_pred hhcc---cccccc----------------cc-------------------------------------------------
Confidence 1110 000000 00
Q ss_pred ccCCcccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHhC------CcHHHHHHHHHH-----HHHHhccCChHHHH
Q 010427 290 LGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMG------LNMSWTALTAAL-----VLVVLDFKDAMPCL 358 (511)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~------l~~~~~al~~a~-----~l~~~~~~~~~~~~ 358 (511)
.++++.+ ++..+ ...-+ +...++..+.| .++...+..+.. .....+..+.++..
T Consensus 179 ------------~~~~~~~-~~~~~-allpl-~p~iil~l~~g~~t~~~~~~~~~~~v~v~~~~~l~~~~~r~~n~~~~~ 243 (388)
T TIGR00771 179 ------------EIKVIEG-VPVLY-AILPL-IPLIILLLFIGGTGLQQVPLHEWTKMGVPQAMLIGAEFGRIVNRISPV 243 (388)
T ss_pred ------------cchhhcc-cchHH-HHHHH-HHHHHHHHHhccccccCCCccHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 0000000 11111 11101 11111112223 333333333322 22233444444333
Q ss_pred hh----------cChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh-chHHHHHHH
Q 010427 359 DK----------VSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA-SNVPTVLLL 427 (511)
Q Consensus 359 ~~----------idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i-sN~a~~~l~ 427 (511)
++ ..-.+++.+.+-.+++..++.+|..+.+++.+.... .++.....+..+...+++-++ |+.|....+
T Consensus 244 ~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~~-~~~~~~ll~~~l~~~~lg~~~~s~~a~~~~~ 322 (388)
T TIGR00771 244 KITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVDAAISFAKESG-LGNIFVMWGATIGPFLMALITGSGNAPFIAF 322 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 21 223367777888889999999999999999987652 111112222334555688899 689999999
Q ss_pred HHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHH-hhhhccCCCCceeecchhhhhhhHHHHHHH
Q 010427 428 GARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVC-EQARRSKPSGYTLSFWTHLKFGLPSTIVIT 502 (511)
Q Consensus 428 ~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~-~~~~~~~~ggy~i~f~df~k~G~plt~l~~ 502 (511)
.|++ ..++++.|.||.............|....|+|. |+.+. +. . +.+..|..|.-+|.++..+
T Consensus 323 ~PIl-~pia~~~Gidpv~~gi~~~i~~~iG~~tpPv~~--~l~v~~gi------a--~v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 323 NTAI-PPHAVELGYTHVNLGMPMAIAGALGRTASPIAG--VVVVCAGL------A--MVSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred HHHH-HHHHHHcCCCHHHHHHHHHHHHHHhCcCCcHHH--HHHHHHhh------c--CCCHHHHHHHHHHHHHHhc
Confidence 9954 556666788886444445555667777789883 45444 32 1 3468999999999887653
No 46
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=99.44 E-value=6.7e-12 Score=131.98 Aligned_cols=164 Identities=26% Similarity=0.339 Sum_probs=125.1
Q ss_pred ccchhHHHHHHHHHHHHHh----cCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHHH
Q 010427 31 LPIGRTAGALLGAMLMIIF----KVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLCR 105 (511)
Q Consensus 31 ~~i~~~~~al~~~~~l~~~----g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~~ 105 (511)
++++...++..+++++... +.+++++..+..+|+.+.+..||++++++++++|+.+.+++.+....+ +...-++.
T Consensus 242 ~~ip~~~va~~~a~ill~~~~r~~~~~~~~~l~~~pW~il~F~~gLfvvV~~L~~~Gl~~~l~~~l~~~~~~~~~~a~~~ 321 (423)
T PF02040_consen 242 LGIPVSAVAGAGAVILLALARRSRKISPKRVLREVPWSILPFVLGLFVVVEGLENTGLTELLARLLGTAASQGLLAAILG 321 (423)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHhCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCChHHHHHH
Confidence 3344445566666555432 356677899999999999999999999999999999999999876544 45567778
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc-----CCCccHHHH
Q 010427 106 ICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL-----QSGISFGKF 180 (511)
Q Consensus 106 ~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-----~~~~~f~~f 180 (511)
+..+++++|+++||-++.++..+.+ +-++..+......+++..+++|+|..+||+|+-.|+++.. ..++++.+|
T Consensus 322 ~g~~~A~lsnl~NNLPa~Li~~~ai-~~~~~~~~~~~~~~~A~lIG~nlGp~lTp~GSLATLLWl~~L~~~Gi~is~~~f 400 (423)
T PF02040_consen 322 MGFLSAILSNLMNNLPAVLIGALAI-QAAHAPGLVREALIYALLIGVNLGPNLTPIGSLATLLWLHILRRKGIKISWGEF 400 (423)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhh-hcccCCchhHHHHHHHHHHhcccCcccchHHhHHHHHHHHHHHHCCCCCCHHHH
Confidence 8999999999999999887765433 2222222223367889999999999999999999999853 345899999
Q ss_pred HHhHHHHHHHHHHHH
Q 010427 181 LLGILPSMLVGVFVN 195 (511)
Q Consensus 181 ~~~~lp~~ii~l~~~ 195 (511)
+|.|++.....++.+
T Consensus 401 ~k~G~vlt~p~Ll~a 415 (423)
T PF02040_consen 401 LKLGLVLTPPVLLAA 415 (423)
T ss_pred HHHhHHHHHHHHHHH
Confidence 999987655555444
No 47
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=99.39 E-value=2.2e-11 Score=129.58 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChH----HHH----HhCChhHHHHHHHHHHHHHHHHH
Q 010427 10 VLGSFAFVIFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPE----EAF----AAIDLSVLGLLFGTMVVSFYLER 81 (511)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~----~a~----~~~~~~~i~~l~g~~~i~~~l~~ 81 (511)
+++++..+.+.++..+. .++ ...+++.+..+.++....+++ ++. +.++|.++++.+|++ +.++++
T Consensus 232 ~~~Ll~~l~viv~~~~~---~~~--~~~~~li~~~iall~~~~~~~~~~~~i~~~~~~~v~~~~Li~~aglf--~~~l~~ 304 (431)
T TIGR00784 232 WFNLLLTISLMVFLVLG---TKH--LSVLFLIAFVLALTVNYPNVKMQKERIAAHSGNALTVVSMVFAAGVF--TGILSG 304 (431)
T ss_pred HHHHHHHHHHHHHHHhc---ccC--HHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccHhHHHHHHHHHHHH--HHHHhh
Confidence 56666666655555543 233 346567777666666654443 344 457788888888888 999999
Q ss_pred hcHHHHHHHHHHHhccC-ch-hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcc
Q 010427 82 AGMFKYLEIVLSWRSRG-AK-DLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSAT 159 (511)
Q Consensus 82 tG~~~~ia~~l~~~~~~-~~-~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~T 159 (511)
+|..+.+++.+....++ .. .+...+.+++.++|.++||++.+..+.|++.+++++.|++|..+..+..+++++ ...+
T Consensus 305 ~G~i~~la~~l~~~~~~~~~~~~~~i~~~~s~~~s~~~sn~a~~~~l~Piv~~ia~~~G~~~~~l~~a~~i~~~~-~~~S 383 (431)
T TIGR00784 305 TKMVDAMAGSLVSIIPSSMGGFFPVIVALTSIPFTFVMSNDAYYFGVLPIFAEAASAYGIDPVEIARASIMGQPV-HLLS 383 (431)
T ss_pred cCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc-hhcC
Confidence 99999999998876443 22 466778899999999999999999999999999999999999888777777776 6799
Q ss_pred cccccchhhhccCCCccHHHHHHhHHHHHHHHHHHH
Q 010427 160 PIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVN 195 (511)
Q Consensus 160 piG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~ 195 (511)
|+ +|+|.++++..+++..|+.|.+++..+.+.++.
T Consensus 384 Pv-s~~~~l~~~~~~~~~~d~~k~~~~~~~~~~~v~ 418 (431)
T TIGR00784 384 PL-VPSTVLLVGMLGVSLGDHQKFAVKWAVITSIVM 418 (431)
T ss_pred Cc-hHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999999988777665553
No 48
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=99.35 E-value=4.9e-11 Score=123.80 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHH----HhcCCChHH---HHHh-CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHH
Q 010427 35 RTAGALLGAMLMI----IFKVITPEE---AFAA-IDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRI 106 (511)
Q Consensus 35 ~~~~al~~~~~l~----~~g~~~~~~---a~~~-~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~ 106 (511)
...+.++|..+.+ +.|+.+-.+ ++++ .+...+..+ -|.+++-+.+..+|+-+-++.....+ ......+
T Consensus 319 ~a~vg~igl~vii~~t~~~g~~~eh~~g~af~ealpftall~v--ff~~vavi~~q~lf~p~i~~vl~~~~--~~q~~~i 394 (515)
T TIGR00774 319 LAAVGLIGLSVIILATSFTGVTDEHSIGKAFEESLPFTALLAV--FFSVVAVIIDQELFSPIIDFVLAAEE--KTQLALF 394 (515)
T ss_pred HHHHhHHHHHHHHHHHHhcCCcchhhhhHHHhhhccHHHHHHH--HHHHHHHHHhhhhhHHHHHHHHcCCC--ccchHHH
Confidence 3444566654333 357665433 3432 344444333 46788888999999999998764433 3344556
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCC-Cc---hHHHHHHHHHHhhccCcccccccchhhhcc-----CCCccH
Q 010427 107 CFISALSSALFTNDTCCVILTEFVLKIARQNGV-SP---HPFLLALASSANVGSSATPIGNPQNLVIAL-----QSGISF 177 (511)
Q Consensus 107 ~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~-~p---~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-----~~~~~f 177 (511)
.+.++++|+|+||++.+++|.|++.++ ...|. ++ .+++++++.++|+||.+||+|..+|+++.+ ..+++|
T Consensus 395 lw~SgilSa~IDNVP~vatmIPvIk~l-~~~G~~~~~~~~~LWWALALGA~LGGNaTpiGAsANLVv~~iA~k~G~rISF 473 (515)
T TIGR00774 395 YVFNGLLSSISDNVFVGTVYINEAKAA-LTEGLITREQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSY 473 (515)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HhcCCCccccccHHHHHHHHhccccccccHHHHHHHHHHHHHHHhCCCCccH
Confidence 788999999999999999999999999 66776 33 589999999999999999999999999863 346999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 010427 178 GKFLLGILPSMLVGVFVNTLILL 200 (511)
Q Consensus 178 ~~f~~~~lp~~ii~l~~~~~~~~ 200 (511)
.||+|+++|..++.+++..++++
T Consensus 474 ~~flK~GlP~TLvsliVs~lyl~ 496 (515)
T TIGR00774 474 GRMVYMALPYTIVLAIVGLLGIE 496 (515)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999888765443
No 49
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=99.31 E-value=1.1e-08 Score=110.01 Aligned_cols=137 Identities=13% Similarity=0.068 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccC-chhHHHHHHHHHHH--HHhhcchhhHHHHHHHHHHHHHHHcCCCc
Q 010427 65 VLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRG-AKDLLCRICFISAL--SSALFTNDTCCVILTEFVLKIARQNGVSP 141 (511)
Q Consensus 65 ~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~-~~~ll~~~~~~~~~--lS~flsN~~t~~i~~Pi~~~ia~~~~~~p 141 (511)
.+++++...-..+.+++||..|..-+.+.++.++ ++.++..++.+-.. .+..+.+.+ +.+.|+.+.++.++|.|+
T Consensus 80 ii~~I~~igG~~~vm~~tGA~~~~v~~l~k~l~~~~~~~I~i~~~~f~~~~~~~g~~~~~--i~~~~il~pi~~alG~d~ 157 (465)
T PF03606_consen 80 IIFFIMIIGGFFGVMNHTGAIDALVNLLIKPLKGKKNPLIPILMFFFSGGGLTIGIPEEA--IAFMPILIPILIALGYDP 157 (465)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHcCCCH
Confidence 3455555556667799999999999998877654 34444433332222 233333333 889999999999999997
Q ss_pred hHHHHHHHHHHhhccCcccccccchhhhc-cCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010427 142 HPFLLALASSANVGSSATPIGNPQNLVIA-LQSGISFGKFLLGILPSMLVGVFVNTLILLCMYW 204 (511)
Q Consensus 142 ~~~l~~~a~aan~Gg~~TpiG~p~Nliv~-~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~ 204 (511)
..-.-.+..++. .|..+|..||-|..+. +-.+++..+++........+..++...+..++.+
T Consensus 158 ~~a~a~v~~~~~-~g~~~~~~npf~~~iAq~iaglp~~sg~~~r~i~~~i~~~i~~~~~~~ya~ 220 (465)
T PF03606_consen 158 ITAAAAVILGAG-AGFAGPPSNPFTVGIAQKIAGLPLFSGFWFRQIPFVIFTLIAIAYVHRYAQ 220 (465)
T ss_pred HHHHHHHHHHHH-HhhcCCccChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444444 5788999999887766 4578999999877665555545554444444333
No 50
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=99.24 E-value=9.7e-10 Score=116.32 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=122.0
Q ss_pred hcCCChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhH
Q 010427 49 FKVITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTC 122 (511)
Q Consensus 49 ~g~~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t 122 (511)
.+..+.+|..+.++ +..++.+++...++..++++|+.+.+++.+.....++...++.+.++..+++++++|+++
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~~~~~~~~~~li~~~~~ilg~~~~~~a~ 319 (405)
T TIGR00786 240 YRELTLKSLCDVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANAISSPIVFLIMINILLLIVGMFMDLTPA 319 (405)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHhcccHHHH
Confidence 46788888887776 577888888899999999999999999998876556666666778888899999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCccc-ccccchhhhccCCCccHHHHHHhHHHHHHHHHHH
Q 010427 123 CVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATP-IGNPQNLVIALQSGISFGKFLLGILPSMLVGVFV 194 (511)
Q Consensus 123 ~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~Tp-iG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~ 194 (511)
.+++.|+...++++.|++|..+.+...+++++ |.+|| +|.+.+ +..+..++++.|+.|.++|..++.++.
T Consensus 320 ~~i~~PI~~p~a~~~Gv~p~~~~~~~~~~~~~-g~ltPPvg~~~~-~~~~~~~~~~~~~~k~~~p~~~~~~~~ 390 (405)
T TIGR00786 320 ILILTPILLPVAVHLGIDPVHFGVMFVLNLEI-GLLTPPVGTNLF-VASGVAKMSITEVTRALWPFLLAQFLV 390 (405)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hcCCCCchHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 56775 996444 335677899999999999987766554
No 51
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=99.19 E-value=4.5e-08 Score=98.62 Aligned_cols=342 Identities=17% Similarity=0.210 Sum_probs=200.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCC
Q 010427 61 IDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRG-AKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGV 139 (511)
Q Consensus 61 ~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~-~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~ 139 (511)
.....+.++++.+-. ..+.++|+||-+-+++.+..|+ +.+......+++...|-==|.++|-.+-+|-.+.+-+++|.
T Consensus 57 va~t~imlmFAILfF-gIM~DsGLFdPli~~il~~~kgdp~kV~igTavla~~v~LDGdGatTflIti~A~LPlYkrLgm 135 (433)
T COG2851 57 VAPTAIMLMFAILFF-GIMIDSGLFDPLIRKILSIVKGDPVKVVIGTAVLAAVVSLDGDGATTFLITIPALLPLYKRLGM 135 (433)
T ss_pred HHHHHHHHHHHHHHH-HHHHhcccchHHHHHHHHHhcCCceeeeHHHHHHHHHhhccCCCceEEEeeHHhHhHHHHHcCC
Confidence 344555666665444 6789999999999999887764 66655555554444443333445557788888889999999
Q ss_pred CchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcccc
Q 010427 140 SPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAE 219 (511)
Q Consensus 140 ~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~ 219 (511)
+|..+..-...++.+ -..+|=|.|+-= +.+..|.+-.|.+...+|..++|++....+-+++.+|+-. |-..
T Consensus 136 n~~~l~~l~~ls~gv-mN~~PWGGPt~R-aas~Lg~d~~el~~pliP~~i~Gl~~vl~lA~~lG~kErk-Rlg~------ 206 (433)
T COG2851 136 NPYLLALLATLSAGV-MNMLPWGGPTAR-AASVLGVDPAELFVPLIPIQIIGLVLVLALAWLLGKKERK-RLGV------ 206 (433)
T ss_pred cHHHHHHHHHHhhhh-eecCCCCCcHHH-HHHHhCCCHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHH-Hhhh------
Confidence 987666666666655 458899998742 2345678899999999999999988765544444443321 1000
Q ss_pred CCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccc
Q 010427 220 DDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEG 299 (511)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (511)
.+. +++..+ .. ++.+
T Consensus 207 -~~~-----~~~~~~----~~----------~~~~--------------------------------------------- 221 (433)
T COG2851 207 -IDL-----SEELEQ----LV----------ELSE--------------------------------------------- 221 (433)
T ss_pred -ccC-----chhhhh----cc----------ccCC---------------------------------------------
Confidence 000 000000 00 0000
Q ss_pred cccCCcccchhhHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccCChHHHHhhcC--------hhHHHHHH
Q 010427 300 KKDNTQKWDWKRVSWKTCTYLVILGMLIALLMG-LNMSWTALTAALVLVVLDFKDAMPCLDKVS--------YSLLIFFC 370 (511)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~-l~~~~~al~~a~~l~~~~~~~~~~~~~~id--------w~~ll~f~ 370 (511)
+++++.++.+..|.= + +.+++.......| +|+.+..+.|..+.+..+-.+.+|..++++ --.++|-+
T Consensus 222 --~~~~~~~rpkl~W~N-~-lLtl~lm~~Lv~gi~p~~~lFmig~~iAL~vNYP~vk~Q~~ri~aha~nal~vvs~i~AA 297 (433)
T COG2851 222 --EDQEELKRPKLFWFN-L-LLTLALMGLLVSGIFPPGVLFMIGFAIALPVNYPNVKEQMERIGAHAGNALMVVSLIFAA 297 (433)
T ss_pred --chhhhhhccHHHHHH-H-HHHHHHHHHHHhcccchhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 000101111222211 1 1222223333456 789998888888777776666665555543 23455555
Q ss_pred HHHHHHHHHHhhChHHHHHHHhhhhhhcccchhH--HHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHH
Q 010427 371 GMFITVEGFNKTGIPSTLWTLMEPHARINRVGGI--SILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWL 448 (511)
Q Consensus 371 glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~--~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~ 448 (511)
|.| .+-++.||-.|.++..+....+ +..++. .+.++++.-.+-++||-+.--=..|+++ +.+...|.+|...-.
T Consensus 298 Gif--~Gil~gtgMvdama~si~~vIP-~~lgpyl~~ivgl~svP~tf~~snDAyYfGvlPIv~-e~as~yGv~pv~~A~ 373 (433)
T COG2851 298 GIF--LGILSGTGMVDAMAKSIVSVIP-DALGPYLPLIVGLLSVPFTFFMSNDAYYFGVLPIVA-EAASAYGVEPVEIAR 373 (433)
T ss_pred HHH--hhhhCCCchHHHHHHHHHHhCc-HhhcchHHHHHHHHcCCeEEEecCcchhhhhHHHHH-HHHHHcCCCHHHHHH
Confidence 555 6778999999999998865533 111111 2334445556679999999998999664 455556887754211
Q ss_pred HHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhh
Q 010427 449 ILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGL 495 (511)
Q Consensus 449 ~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~ 495 (511)
....+...-+.+|.- ++..+..+.++ .+++||.|+.+
T Consensus 374 -AsiiGq~vh~lSPlv-Pat~LlvgLa~--------v~~gdh~k~a~ 410 (433)
T COG2851 374 -ASIIGQPVHFLSPLV-PATYLLVGLAK--------VDMGDHQKFAL 410 (433)
T ss_pred -HHHhCCcceeeccch-HHHHHHHHhhc--------CChhHHHHHHH
Confidence 222233334566765 44555566543 24566665554
No 52
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=99.17 E-value=7.7e-07 Score=95.28 Aligned_cols=154 Identities=13% Similarity=0.084 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHH----hCC---hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHH
Q 010427 36 TAGALLGAMLMIIFKVITPEEAFA----AID---LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICF 108 (511)
Q Consensus 36 ~~~al~~~~~l~~~g~~~~~~a~~----~~~---~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~ 108 (511)
....+++++...+..-.++.|..+ ++. ++..+.++...+++..||++|..+++++.+.+..+.. |..+.++.
T Consensus 25 ~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g~~-r~~~a~~~ 103 (440)
T TIGR00791 25 FVALLVVSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFGKS-RVQWAVVI 103 (440)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhccc-chHHHHHH
Confidence 344566666666665666655443 333 6677788888999999999999999999988665433 34444455
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHH
Q 010427 109 ISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSM 188 (511)
Q Consensus 109 ~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ 188 (511)
.+++++....=+...+++.|++.+++++.|.++..+.++.+.+....-..-|-+-++ +.+.+..|.+..++...+++..
T Consensus 104 ~~~ilgi~~f~~~~~vil~Pi~~~l~~~~g~s~~~~a~~~~~~~~~~~~~vPp~Pg~-~~~a~~~g~~~~~~~~~gl~~~ 182 (440)
T TIGR00791 104 AGLIVGLALFFEVGFVLLIPLVFSIAAEAKISLLKLGIPMVAALSVAHGFLPPHPGP-TAIANEYGADIGEVLLYGLIVA 182 (440)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhceeCCCCccH-HHHHHHhCCCHHHHHHHHHHHH
Confidence 555555443334457799999999999999999988888877766654455554444 4555667889999999888876
Q ss_pred HHH
Q 010427 189 LVG 191 (511)
Q Consensus 189 ii~ 191 (511)
+..
T Consensus 183 i~~ 185 (440)
T TIGR00791 183 IPT 185 (440)
T ss_pred HHH
Confidence 654
No 53
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=99.16 E-value=4.1e-07 Score=95.33 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCCChHHHH-----HhCChhHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHhccCchhHHHHHHHHH
Q 010427 37 AGALLGAMLMIIFKVITPEEAF-----AAIDLSVLGLLFGTMVVSFYLERA-GMFKYLEIVLSWRSRGAKDLLCRICFIS 110 (511)
Q Consensus 37 ~~al~~~~~l~~~g~~~~~~a~-----~~~~~~~i~~l~g~~~i~~~l~~t-G~~~~ia~~l~~~~~~~~~ll~~~~~~~ 110 (511)
...+.++..+-+..-.+++|.. .+..++++.++.++..+...++++ |..+++++.+.+.. ++++.-+...+ +
T Consensus 25 ~all~~al~lgl~~G~~~~~i~~~i~~~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l~~l~-g~~~~~~ap~l-i 102 (387)
T TIGR00529 25 LLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGMRTIF-SKNSDSFVPAL-I 102 (387)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CcccHHHHHHH-H
Confidence 4455566665555567777766 455688888888888888899999 99999999988765 33343333333 3
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHH
Q 010427 111 ALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLV 190 (511)
Q Consensus 111 ~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii 190 (511)
.++.. ++..+++.|++.+++++.+.++...-.+...+-.+.=..-|- +|-=+.+.+..|.+..++..+++|..+.
T Consensus 103 G~lPv----~~g~vilaPlv~~la~~~~~s~~~~~~~~~~~~~v~h~~~Pp-~Pgpi~aa~~l~~~lg~~il~gl~i~i~ 177 (387)
T TIGR00529 103 GLMPM----PGGALFSAPMVKNSLKEERINPEKLTVKNYWFRHTWEFFWPI-YPAVVLVSALSGIHPGKVSLTLFPVFAI 177 (387)
T ss_pred HHhhH----HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33322 467778999999999999999998888888777666555554 5544555666789999999999998877
Q ss_pred HHH
Q 010427 191 GVF 193 (511)
Q Consensus 191 ~l~ 193 (511)
..+
T Consensus 178 ~~i 180 (387)
T TIGR00529 178 AFF 180 (387)
T ss_pred HHH
Confidence 643
No 54
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.15 E-value=1.8e-09 Score=113.78 Aligned_cols=176 Identities=12% Similarity=0.100 Sum_probs=132.2
Q ss_pred HHHHHHHhC-CcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccch
Q 010427 324 GMLIALLMG-LNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVG 402 (511)
Q Consensus 324 ~~l~~~~~~-l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 402 (511)
...++.-.| +.++...-+|.+++.+.-..++. +.+|++++++++++.++.++++||..|++.+...+..+.++..
T Consensus 12 ~i~~g~r~ggig~g~~gg~g~~il~~~~~~~p~----~~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk~ 87 (443)
T PRK12489 12 CLFLGARYGGIGLGLLGGIGLVILVFVFGLPPG----KPPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPKY 87 (443)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCCC----CCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChhH
Confidence 334444443 77788877777777654223343 4899999999999999999999999999999887654323332
Q ss_pred hHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCC
Q 010427 403 GISILAIIILVLSNVASNVP-TVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPS 481 (511)
Q Consensus 403 ~~~~l~~~~~ilS~~isN~a-~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~g 481 (511)
...+..++.+++.+++|++ ++..+.|++ ...|...+.+|.++....++.+-.|...||++..+|.++- ..++. +
T Consensus 88 -i~llap~vt~l~afl~~Tg~~v~~~lPVi-~~vA~k~gi~PsrpLa~as~As~lGi~aSpin~~v~~l~~-~l~~~--~ 162 (443)
T PRK12489 88 -ITILAPFVTYTLTFLCGTGHVVYSILPII-YDVALKNGIRPERPMAAASVASQMGITASPVSAAVVSLVA-MLGNV--T 162 (443)
T ss_pred -HHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHcCCChhhhHHHHHHHHHHHHHhcchhHHHHHHHH-HHHhc--c
Confidence 3345667777889999999 599999954 6778888999988877777777788999999988887753 33221 3
Q ss_pred C--ceeecchhhhhhhHHHHHHHHHHHHH
Q 010427 482 G--YTLSFWTHLKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 482 g--y~i~f~df~k~G~plt~l~~iv~~~~ 508 (511)
+ ..++++|+..+|+|.+++.++...++
T Consensus 163 ~~~~g~~~f~il~VgIP~~~ig~l~~~l~ 191 (443)
T PRK12489 163 GEGRHITLLDILAVTIPATLIGVLAAALW 191 (443)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45789999999999999988875544
No 55
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.08 E-value=5.6e-09 Score=111.01 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=124.7
Q ss_pred CcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHH
Q 010427 333 LNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIIL 412 (511)
Q Consensus 333 l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ 412 (511)
+..+...-+|.+++...=..+++| ++|++++++.+...+...+++||+.|++++...+..+..+....+.+.+++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~~~~lli~i~~~ 97 (433)
T PRK09412 22 IGIGFAGGLGVLILTFIFGLKPGS----IPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPKYITFLAPIVTY 97 (433)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC----CCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHhHHHHHHH
Confidence 667777777777776653345543 9999999999999999999999999999986655543222222344455677
Q ss_pred HHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhh
Q 010427 413 VLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLK 492 (511)
Q Consensus 413 ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k 492 (511)
++|.+.+|...+..+.|++ ..++...+.|+.........++++|+..||++..+|.+.-..+ +.| ++|+||++
T Consensus 98 lfs~~~~~~~~~i~~~PI~-i~ia~~lG~d~~~~l~~~~~~a~iG~~aspin~~tv~ia~~ia----~~g--i~f~~~~~ 170 (433)
T PRK09412 98 LFTFLAGTGHIAFSTLPVI-AEVAKEQGIRPSRPLSIAVVASQIAITASPISAAVVAMSSVLE----PLG--VSYLTLLM 170 (433)
T ss_pred HHHHHhcHHHHHHHHHHHH-HHHHHHcCCCCcchHHHHHHHHHHhcccCCccHHHHHHHHHHh----cCC--CCHHHHHH
Confidence 7887777777778899954 6788888888876777788888999999999988666654432 124 46999999
Q ss_pred hhhHHHHHHHHHHHHH
Q 010427 493 FGLPSTIVITAIGLAL 508 (511)
Q Consensus 493 ~G~plt~l~~iv~~~~ 508 (511)
+++|..++.++++.++
T Consensus 171 ~~lp~~iv~~~~~~~~ 186 (433)
T PRK09412 171 VVIPSTLLAVMVAAFV 186 (433)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988876554
No 56
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=99.05 E-value=3.3e-08 Score=99.88 Aligned_cols=370 Identities=20% Similarity=0.297 Sum_probs=199.5
Q ss_pred HHHhcCCChHHHHHhCC--hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHH
Q 010427 46 MIIFKVITPEEAFAAID--LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCC 123 (511)
Q Consensus 46 l~~~g~~~~~~a~~~~~--~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~ 123 (511)
.++.|-.+|++.++.+. .++++++ ||+++....--.+.-++=.++.-.-+|...+-+..|+.++++|+|+|..+++
T Consensus 75 Av~iGmTsp~~v~hEi~~N~eViLLL--~FMVAGIYFMK~lLlf~FTklLl~irSK~~LSL~Fc~~aAfLSAFLDALTV~ 152 (515)
T PF06450_consen 75 AVAIGMTSPEQVYHEIAANFEVILLL--MFMVAGIYFMKQLLLFVFTKLLLKIRSKIVLSLAFCFAAAFLSAFLDALTVT 152 (515)
T ss_pred HHHHcCCCHHHHHHHHHhChHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 35678999999988864 4555544 5555555444445555555554344566667778999999999999999888
Q ss_pred HHHHHHHH-------HHHHHcCC------------C-------------chHHHHHHHHHHhhccCcccccccchhhhcc
Q 010427 124 VILTEFVL-------KIARQNGV------------S-------------PHPFLLALASSANVGSSATPIGNPQNLVIAL 171 (511)
Q Consensus 124 ~i~~Pi~~-------~ia~~~~~------------~-------------p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~ 171 (511)
+..+.+.. +.+...+. + -+-++|=-+.++-+||.+|.+|.|||+++..
T Consensus 153 AViIsVa~GFY~iYHkvaSg~~~~~~~d~~~D~~v~~~~r~~Le~FRaFLRsLmMH~~VGTALGGV~TmVGEPQNLiIa~ 232 (515)
T PF06450_consen 153 AVIISVAVGFYSIYHKVASGKDFHDDHDHTDDSKVDELNREDLEQFRAFLRSLMMHAAVGTALGGVMTMVGEPQNLIIAK 232 (515)
T ss_pred eeeeEeeehhhhhhhhhhcCCCCCCccCCccchhhhhhhHHHHHHHHHHHHHHHHhcccchhhcceeeecCCchhhhhhh
Confidence 77655543 22221110 0 1146677789999999999999999999999
Q ss_pred CCCccHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcc
Q 010427 172 QSGISFGKFLLGILPSM----LVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSK 247 (511)
Q Consensus 172 ~~~~~f~~f~~~~lp~~----ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (511)
..|-.|.||...+.|.+ +.|++.+..+ = -.|... + ..+. ++ ..
T Consensus 233 ~agW~F~eFflrmaPVt~PVl~~Gl~tc~l~-E--k~~~fG--------Y--G~~l-----P~---------------~V 279 (515)
T PF06450_consen 233 QAGWDFGEFFLRMAPVTLPVLICGLLTCVLV-E--KFKWFG--------Y--GAKL-----PE---------------NV 279 (515)
T ss_pred hcCCCHHHHHHhhccchHHHHHHHHHHHHHH-H--HhhhcC--------C--cccC-----CH---------------HH
Confidence 99999999998776544 3333322110 0 000000 0 0000 00 01
Q ss_pred cccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchh-hHHHHHHHHHHHHHHH
Q 010427 248 RRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWK-RVSWKTCTYLVILGML 326 (511)
Q Consensus 248 r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~l 326 (511)
|+ ..++.+++. ++++..+.| +...+++....+ +
T Consensus 280 r~---------------------------iL~~~~~~~----------------~~~rt~~~~~~L~vQa~~~vwL---i 313 (515)
T PF06450_consen 280 RQ---------------------------ILEEFDKEE----------------DAKRTKQDKAKLIVQALIGVWL---I 313 (515)
T ss_pred HH---------------------------HHHHHHHHH----------------HHhcCHHHHHHHHHHHHHHHHH---H
Confidence 10 011101000 000111111 222223222111 1
Q ss_pred HHHHhCCcHHHHHHHHHHHHH----HhccCCh---HHHHhh-cChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhc
Q 010427 327 IALLMGLNMSWTALTAALVLV----VLDFKDA---MPCLDK-VSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARI 398 (511)
Q Consensus 327 ~~~~~~l~~~~~al~~a~~l~----~~~~~~~---~~~~~~-idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~ 398 (511)
++.++ +++-+.++|....+ ..+..+. .+++++ .+...++.+ .|.++.-+.+..+-+-+-+++....
T Consensus 314 ~~LA~--HlA~VGlIGLsVIil~Taf~Git~EH~iGkAFeEaLPFTALL~V--FF~vVaVI~dQ~LF~PiI~~VL~~~-- 387 (515)
T PF06450_consen 314 VALAF--HLAEVGLIGLSVIILATAFCGITDEHAIGKAFEEALPFTALLVV--FFAVVAVIIDQHLFTPIIQFVLSAE-- 387 (515)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHHhcCCcchhhhhHhHhhccchHHHHHH--HHHHHHHHhhhhhhHHHHHHHHcCC--
Confidence 11111 12222333332222 2344443 355543 666555433 4566666777766666666654332
Q ss_pred ccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhh----hhHHHHHhh
Q 010427 399 NRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGS----AANLIVCEQ 474 (511)
Q Consensus 399 ~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs----~aNliv~~~ 474 (511)
+.....++++.-.++|.+-+|+=++.+...=+. .+-..|.-....+=.++...+.|-|+-.+++ .|=+....-
T Consensus 388 -~~~Ql~~fy~aNGlLS~iSDNVFV~TVYI~E~k--~A~~~G~Is~~qf~~LAVAINTGTNlPSVATPNGQAAFLFLLTS 464 (515)
T PF06450_consen 388 -GSSQLAMFYIANGLLSMISDNVFVATVYINEVK--AALDAGVISREQFDLLAVAINTGTNLPSVATPNGQAAFLFLLTS 464 (515)
T ss_pred -CccchhHHHHhhhhHHhhccceeEEEEeHhhHH--HHHHcCCcCHHHHhhHHhhhhcCCCCCcCcCCCchhHHHHHHHH
Confidence 233455677778899999999866655544121 1112233223345556666677777544444 333332221
Q ss_pred hhccCCCCceeecchhhhhhhHHHHHHHHHHHHH
Q 010427 475 ARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 475 ~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~ 508 (511)
+-. | =.|.+|.+..+..+|.|++..+++...
T Consensus 465 alA--P-LirLSYgrMV~MAlPYTiVl~~vGl~~ 495 (515)
T PF06450_consen 465 ALA--P-LIRLSYGRMVWMALPYTIVLTLVGLLA 495 (515)
T ss_pred hhH--H-HHHHhHhhHHhHhccHHHHHHHHHHHH
Confidence 110 1 345688999999999999888877654
No 57
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=99.02 E-value=2.1e-08 Score=90.06 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=101.9
Q ss_pred CCccchhHHHHHHHHHHHH-HhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccC-chhHHHHH
Q 010427 29 PFLPIGRTAGALLGAMLMI-IFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRG-AKDLLCRI 106 (511)
Q Consensus 29 ~~~~i~~~~~al~~~~~l~-~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~-~~~ll~~~ 106 (511)
.+++++ ..++..+.++- +..-+++||.+++|+++..+++.|...+-+-.+++|-.|+++++..+..++ ++.+=+.+
T Consensus 21 ~kiNiG--llAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~~~~r~~liP~v~ 98 (149)
T PF07158_consen 21 RKINIG--LLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRLVGGRPALIPWVM 98 (149)
T ss_pred cccchH--HHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCceehHHHH
Confidence 333454 44566554433 345679999999999999999999999999999999999999999988775 45566788
Q ss_pred HHHHHHHHhhc-chhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhcc
Q 010427 107 CFISALSSALF-TNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGS 156 (511)
Q Consensus 107 ~~~~~~lS~fl-sN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg 156 (511)
+++++++|++= .+.++.+++.|+...+|+++|++|..+-+....+++.||
T Consensus 99 f~~~~~lsa~G~g~~~~~Ai~aPia~~lA~~~gi~p~l~~~~v~~Ga~aG~ 149 (149)
T PF07158_consen 99 FLLAAVLSAIGAGSIAAVAIMAPIAMSLARRTGINPLLMALIVVCGAQAGG 149 (149)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccccCC
Confidence 88999999884 467888999999999999999998777677777777553
No 58
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=99.00 E-value=2.4e-07 Score=94.02 Aligned_cols=164 Identities=21% Similarity=0.335 Sum_probs=120.6
Q ss_pred cCCCccchhHHHHHHHHHHHHH-hcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHH
Q 010427 27 AVPFLPIGRTAGALLGAMLMII-FKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLC 104 (511)
Q Consensus 27 ~~~~~~i~~~~~al~~~~~l~~-~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~ 104 (511)
+.+.+.++ ..+-+|...+.+ +|. +|.+ ..+++++.+.+...-++.|+.+|-.|++.+.-.|.-+ +|+++.+
T Consensus 14 R~GGiglG--~~gg~G~~il~~~fgl-~Pg~----~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~It~ 86 (364)
T PF03605_consen 14 RLGGIGLG--LAGGLGVAILVFGFGL-KPGS----PPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKYITF 86 (364)
T ss_pred cccchHHH--HHHHHHHHHHHHhcCC-CCCC----CCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCcEEE
Confidence 34443343 445555555544 454 3444 7899999999999999999999999999876554433 5665544
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc--cC-CCccHHHHH
Q 010427 105 RICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA--LQ-SGISFGKFL 181 (511)
Q Consensus 105 ~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~--~~-~~~~f~~f~ 181 (511)
.==++|++++-+..--=++.-+.|++.++|++.|++|++-+-.-..+++.|-.++|+...+--++. +. .++++.|.+
T Consensus 87 lAP~vt~~~T~~~GTgh~a~s~lPVI~eVA~~~~IRPeRPls~svvASq~aItaSPiSAA~~~~~~~l~~~~gv~~~~iL 166 (364)
T PF03605_consen 87 LAPLVTYLFTFLAGTGHVAYSLLPVIAEVAKENGIRPERPLSISVVASQIAITASPISAATVAMIAILAPAHGVSLLQIL 166 (364)
T ss_pred ehhHHHHHHHHHhcccHHHHHhhHHHHHHHHHcCCCCCCchHHHHHHHhcchhcCcHHHHHHHHHHHHccccCCCHHHHH
Confidence 433445555544443334556999999999999999999888888999999999999877655543 45 789999999
Q ss_pred HhHHHHHHHHHHHHHH
Q 010427 182 LGILPSMLVGVFVNTL 197 (511)
Q Consensus 182 ~~~lp~~ii~l~~~~~ 197 (511)
...+|.++++.++..+
T Consensus 167 ~V~iPat~ig~~~~a~ 182 (364)
T PF03605_consen 167 AVTIPATLIGVLVAAF 182 (364)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999999877544
No 59
>PRK11588 hypothetical protein; Provisional
Probab=99.00 E-value=2e-06 Score=91.91 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=81.2
Q ss_pred HHHHHhcHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhc
Q 010427 77 FYLERAGMFKYLEIVLSWRSRG-AKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVG 155 (511)
Q Consensus 77 ~~l~~tG~~~~ia~~l~~~~~~-~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~G 155 (511)
..+++||.+|..-+++.++.++ +..++..++.+-++.+++.--.=-+..+.|+.+.++.++|.|+..-.-.+..++.+|
T Consensus 124 ~vi~~TGAi~~~i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~i~f~pi~v~l~~alGyD~ivg~ai~~lg~~iG 203 (506)
T PRK11588 124 GIVMRTGTIDNGILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEAIAFAIIIAPLMVRLGYDSITTVLVTYVATQIG 203 (506)
T ss_pred HHHHHhchHHHHHHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHhhhh
Confidence 5579999999998888866554 556666666666666655443233447999999999999999987766677777775
Q ss_pred cCcccccccchhhhcc-CCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010427 156 SSATPIGNPQNLVIAL-QSGISFGKFLLGILPSMLVGVFVNTLILLCMYWR 205 (511)
Q Consensus 156 g~~TpiG~p~Nliv~~-~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~ 205 (511)
- .+-.=||-++-+++ -.+++.++=+...+...++..++...++.++.+|
T Consensus 204 f-~~s~~NPftvgIAQ~iAglp~~SG~~~R~i~~~v~~~i~i~yv~~YA~k 253 (506)
T PRK11588 204 F-ATSWMNPFSVAIAQGIAGVPVLSGSGLRIVMWVIFTLIGLIFTMVYASR 253 (506)
T ss_pred h-cccccCccHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44444888876654 2345433323233333333444444444444443
No 60
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=98.99 E-value=2.1e-06 Score=91.10 Aligned_cols=163 Identities=21% Similarity=0.244 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHh----CCh---hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHH
Q 010427 37 AGALLGAMLMIIFKVITPEEAFAA----IDL---SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFI 109 (511)
Q Consensus 37 ~~al~~~~~l~~~g~~~~~~a~~~----~~~---~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~ 109 (511)
..-+++++..-+..-.+++|..+. +.. ..-+.+...-+++..+++||..+++++.+.++.+ +++.-+.+.+.
T Consensus 26 ~aLl~~al~~gl~~G~~~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G-~k~~~~A~~i~ 104 (441)
T PF02447_consen 26 LALLIVALIVGLLAGMPPEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFG-EKRAPLALAIT 104 (441)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcC-CCcccHHHHHH
Confidence 434455555555556777776544 332 2234444557789999999999999999886643 33444444555
Q ss_pred HHHHH--hhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhc-cCcccccccchhhhccCCCccHHHHHHhHHH
Q 010427 110 SALSS--ALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVG-SSATPIGNPQNLVIALQSGISFGKFLLGILP 186 (511)
Q Consensus 110 ~~~lS--~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~G-g~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp 186 (511)
.+++| .|.+ ...+++.|++.+++|+.|.+...+.++++.+.... +..-| +|--+-+.+..+.+...++.+|++
T Consensus 105 g~iv~IPvF~d--v~~viL~Pl~~~la~~~~~s~~~~~~~l~~gl~~~h~lvPP--tPgpla~a~~lg~dlG~~il~Gl~ 180 (441)
T PF02447_consen 105 GFIVGIPVFFD--VGFVILAPLAFSLARKTGKSLLYLALPLAAGLSVTHALVPP--TPGPLAAAGALGADLGLVILYGLI 180 (441)
T ss_pred HHHhhhHHHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC--CCcHHHHHHHhCCChhHHHHHhHH
Confidence 55554 5544 67899999999999999999888888888777664 33333 555566667778889999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 010427 187 SMLVGVFVNTLILLCMYWRILS 208 (511)
Q Consensus 187 ~~ii~l~~~~~~~~~~~~~~Lp 208 (511)
..+...++. .+++.|+..
T Consensus 181 vaip~~~ia----g~~~~~~~~ 198 (441)
T PF02447_consen 181 VAIPAMLIA----GPLYGRFIS 198 (441)
T ss_pred HHHHHHHHH----HHHHHHHhc
Confidence 776654442 234555554
No 61
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=98.99 E-value=6.4e-06 Score=85.98 Aligned_cols=350 Identities=19% Similarity=0.253 Sum_probs=194.4
Q ss_pred ccchhHHHHHHHHHHHHHhcCCChHHHHH----hCChhHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHhccCchhHHHH
Q 010427 31 LPIGRTAGALLGAMLMIIFKVITPEEAFA----AIDLSVLGLLFGTMVVSFYLERA-GMFKYLEIVLSWRSRGAKDLLCR 105 (511)
Q Consensus 31 ~~i~~~~~al~~~~~l~~~g~~~~~~a~~----~~~~~~i~~l~g~~~i~~~l~~t-G~~~~ia~~l~~~~~~~~~ll~~ 105 (511)
++++ ...+.|+.++.+..-.+++...+ ...|+++..+.....+.+.++++ |..+++.+.+.+..+ |.....
T Consensus 20 i~i~--~s~~~ga~~l~~~~~~~~~~~~~~~~~~~~~~~i~~il~i~~i~~~~~~~~g~l~~~~~~l~~l~~--R~~~~~ 95 (385)
T PF04165_consen 20 INIG--ISILLGALILGLLFGLGLDAFLKALASSSSWDTIVLILLIYFIMGLMEKLSGQLDRMVESLKGLFP--RVSLAF 95 (385)
T ss_pred hhHH--HHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHH
Confidence 4565 33455555444443355554433 34688888888888888888888 999999988765544 322221
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhh-ccCCCccHHHHHHhH
Q 010427 106 ICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVI-ALQSGISFGKFLLGI 184 (511)
Q Consensus 106 ~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv-~~~~~~~f~~f~~~~ 184 (511)
+= .+=.++.--+-+.+=.|++-+.+++.++++..--.---+-=.+-=...|. .| ++++ .+-.|++..+|...+
T Consensus 96 ~P----AlIGLLPmpGGA~fSAPmV~~~~~~~~ls~e~kt~iNywFRHiwE~~~Pl-Yp-giiLas~l~gi~~~~~v~~~ 169 (385)
T PF04165_consen 96 IP----ALIGLLPMPGGALFSAPMVEEAAEKMGLSPEEKTFINYWFRHIWEFFWPL-YP-GIILASALSGISVGEFVLAM 169 (385)
T ss_pred HH----HHHhcccCCCcceeehHHHHhhhhhccCCHHHHHHHHHHHHHHHHHHhhh-hh-HHHHHHHHhCCCHHHHHHHH
Confidence 11 11233444555666679999999999998875322222222222333443 33 3333 344579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCc
Q 010427 185 LPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGE 264 (511)
Q Consensus 185 lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~ 264 (511)
.|..++.++.. ++++.|..+++++
T Consensus 170 ~P~~~~~~~~G----~~~~~r~~~~~~~---------------------------------------------------- 193 (385)
T PF04165_consen 170 WPITLLAFLIG----WLFFLRPLKKSEK---------------------------------------------------- 193 (385)
T ss_pred HHHHHHHHHHH----HHHHhcccccccc----------------------------------------------------
Confidence 99987654432 2222222210000
Q ss_pred ccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 010427 265 FESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTALTAAL 344 (511)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~al~~a~ 344 (511)
+..++++.+....-+.+ ..++....+++.....+.+.+
T Consensus 194 ----------------------------------------~~~~~~~~l~s~~Pil~--~i~l~v~~~l~~~~~~~~~~l 231 (385)
T PF04165_consen 194 ----------------------------------------KPRSLKDLLKSLWPILV--IILLSVLFKLPLALGLLIALL 231 (385)
T ss_pred ----------------------------------------CCcchHHHHHHHhHHHH--HHHHHHHHcchHHHHHHHHHH
Confidence 00001111111111111 112223356655443333333
Q ss_pred HHHHhccCCh---HHHH-hhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhc-
Q 010427 345 VLVVLDFKDA---MPCL-DKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVAS- 419 (511)
Q Consensus 345 ~l~~~~~~~~---~~~~-~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~is- 419 (511)
.+....+.+. ++.+ +..||++++...+.+..-+-++.||+.|.+.+.+.+.. .+...++..+..+.+-...
T Consensus 232 ~~~~~~~~~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG~~~~l~~~l~~~~----ip~~li~~lipFivG~~TGi 307 (385)
T PF04165_consen 232 AILIYNRFRRKEIKEVLKEALEPKILLLIIGIMIFKEILEATGVVEELPEFLSSLG----IPPFLIIALIPFIVGLITGI 307 (385)
T ss_pred HHHHHhccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHhH
Confidence 3334444443 4655 44999999999999999999999999999998775421 1222222222222222222
Q ss_pred hHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcC-hhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHH
Q 010427 420 NVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGN-LSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPST 498 (511)
Q Consensus 420 N~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~-lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt 498 (511)
+.+.+.+-.|.+... . +. .+..++++.++..|. ++|. |.|=.+..+. ||-++.+-.|--+|..
T Consensus 308 ~~a~vgi~fPll~~l-~---~~---~~~~~la~~~g~~GvmlSP~-HlCLvlT~eY--------Fk~~~~~v~k~l~~p~ 371 (385)
T PF04165_consen 308 TQAFVGIAFPLLAPL-I---GG---LPYLVLAYASGFAGVMLSPV-HLCLVLTAEY--------FKADLGKVYKKLLPPA 371 (385)
T ss_pred HHHHHHHHHHHHHHh-c---cc---chHHHHHHHHHHHHHhhchH-HHHHHHHHHH--------hcccHHHHHHHHHHHH
Confidence 355666667854322 1 11 345678888887774 5563 6776676663 5556777777666666
Q ss_pred HHHHHHHHHH
Q 010427 499 IVITAIGLAL 508 (511)
Q Consensus 499 ~l~~iv~~~~ 508 (511)
++..+++..+
T Consensus 372 ~i~~~~~~~~ 381 (385)
T PF04165_consen 372 LIFLAAGLLY 381 (385)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 62
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=98.98 E-value=7.4e-08 Score=102.70 Aligned_cols=190 Identities=15% Similarity=0.213 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchhHHH---HHHHHHHHHHhcCCChHHHHHhCCh----------hHHHHHHHHH
Q 010427 7 ENVVLGSFAFVIFWILAVFPAVPFLPIGRTAG---ALLGAMLMIIFKVITPEEAFAAIDL----------SVLGLLFGTM 73 (511)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---al~~~~~l~~~g~~~~~~a~~~~~~----------~~i~~l~g~~ 73 (511)
.+.+++++-++-...++++........+...+ ++..+.+.-..+..++||.++.++. +++.++.+..
T Consensus 242 ~p~~yallPllPLilll~f~~~~~~~~~v~~~~~~s~~i~~~~~~~r~~~~k~v~~~l~~~~~GMg~~~a~Vv~liiaAg 321 (455)
T PRK10654 242 APAFYAILPFTPIIGVLIFDGKWGPQLHIITILVICMLLAAVLEFLRSFNTKKVFSGLEVAYRGMADAFAGVVMLLVAAG 321 (455)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35566776665444444443221122332111 2222222223388999998877665 5888999999
Q ss_pred HHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010427 74 VVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALF-TNDTCCVILTEFVLKIARQNGVSPHPFLLALASSA 152 (511)
Q Consensus 74 ~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~fl-sN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa 152 (511)
+.+.+++.+|+.+.+++.+...+.++..+++.+..++++.+... ||+++...+.|+...+|++.|.+|..+.+++..++
T Consensus 322 vfs~gL~~~Gl~~~l~~~l~~lg~~~~~illv~~il~~l~~~~~GSg~a~~~af~pi~~pia~~lG~~pv~~~~~~~~~~ 401 (455)
T PRK10654 322 VFAQGLSTIGFIQSLISLATSFGSAGIILMLVLVILTMLAAITTGSGNAPFYAFVELIPKLAHSSGINPAYLTIPMLQAS 401 (455)
T ss_pred HHHHHHHHcCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999888776567777777778888888888 89999999999999999999999999999999999
Q ss_pred hhccCcccccccchhhh-ccCCCccHHHHHHhHHHHHHHHHHHHHHH
Q 010427 153 NVGSSATPIGNPQNLVI-ALQSGISFGKFLLGILPSMLVGVFVNTLI 198 (511)
Q Consensus 153 n~Gg~~TpiG~p~Nliv-~~~~~~~f~~f~~~~lp~~ii~l~~~~~~ 198 (511)
++|....|++.. +++ .+..+++..|..|...++.++++++..+.
T Consensus 402 ~~G~~~sPvs~~--ii~~ag~a~~~~~~ivKrt~ip~ii~~iv~~i~ 446 (455)
T PRK10654 402 NLGRTISPVSGV--VVAVAGMAKISPFEVVKRTSVPVLVGLLIVIVA 446 (455)
T ss_pred HHhCcCCcchhh--HhhhhcccCCCHHHHHHhhhHHHHHHHHHHHHH
Confidence 999888887543 333 35677999999999766667777765543
No 63
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=98.96 E-value=3.1e-06 Score=89.91 Aligned_cols=340 Identities=16% Similarity=0.206 Sum_probs=186.3
Q ss_pred HHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHH
Q 010427 57 AFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAK-DLLCRICFISALSSALF-TNDTCCVILTEFVLKIA 134 (511)
Q Consensus 57 a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~-~ll~~~~~~~~~lS~fl-sN~~t~~i~~Pi~~~ia 134 (511)
.++..++.++..+---+..++.++++|+.+++-+...+..++.| .+-......++++++.. |+.++++.+-++.+..-
T Consensus 46 ~~~~~~~~~l~aiplFil~G~ll~~~gi~~~l~~~~~~~~g~~~Ggla~~~v~as~~fgaisGS~~A~~a~~G~i~iP~M 125 (416)
T PF06808_consen 46 MFSGLDSFTLLAIPLFILMGELLERSGIADRLIDFANALVGRVRGGLAQVAVVASALFGAISGSSVANAAAIGSITIPEM 125 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCccchhHHHHHHHHHHHhccchHhHHHHHHHHHHHHH
Confidence 34445555555444445567889999999999987654443322 22223334455555544 56677788899999999
Q ss_pred HHcCCCchHHHHHHHHHHhhccCcccccccchhhhc-c-CCCccHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhhcccc
Q 010427 135 RQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA-L-QSGISFGKFLLGIL-PSMLVGVFVNTLILLCMYWRILSVKK 211 (511)
Q Consensus 135 ~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~-~-~~~~~f~~f~~~~l-p~~ii~l~~~~~~~~~~~~~~Lp~~~ 211 (511)
+|.|.++..-.-.++-++.+|...-|. ..++++ . ..+.|..+.+..++ |..+....+ ....+ ...+|+
T Consensus 126 ~k~GY~~~~A~av~aasgtlG~liPPs---i~~ii~~~a~~~~si~~lf~agiiPgll~~~~~----~~~~~--~~~~~~ 196 (416)
T PF06808_consen 126 KKAGYPPEFAAAVIAASGTLGQLIPPS---IGMIIYGMAVTGVSIGDLFIAGIIPGLLLALGL----MIYVY--FIARKP 196 (416)
T ss_pred HHcCCCHHHhHHHHhhccccchhcchH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH----HHhHh--heeecc
Confidence 999999866544455555544333222 122333 3 56788888887776 443332222 11111 111111
Q ss_pred cchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhcccccc
Q 010427 212 DEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELG 291 (511)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (511)
+. +++. + +
T Consensus 197 ~~---------------~~~~-~-------~------------------------------------------------- 204 (416)
T PF06808_consen 197 GL---------------PPEP-R-------A------------------------------------------------- 204 (416)
T ss_pred cc---------------Cccc-c-------c-------------------------------------------------
Confidence 00 0000 0 0
Q ss_pred CCcccccccccCCcccchhhHHHHHH-HHHHHHHHHHHHHhCC-cHHHHHHHHH---HHHHH--hccCChHHHHhhc---
Q 010427 292 VSPKLAEGKKDNTQKWDWKRVSWKTC-TYLVILGMLIALLMGL-NMSWTALTAA---LVLVV--LDFKDAMPCLDKV--- 361 (511)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~l~~~~~~l-~~~~~al~~a---~~l~~--~~~~~~~~~~~~i--- 361 (511)
+.+++++..++.. .+++.+..+.....|. .+.-.+..++ +.+.. .+..+.+|..+..
T Consensus 205 -------------~~~~~~~~~~~~~~~l~~p~iil~~i~~g~~t~teaa~~~~~~~l~i~~~~~~~~~~~~l~~~l~~~ 271 (416)
T PF06808_consen 205 -------------SLKERWRAFKRAIPALLIPVIILGGIYLGIFTPTEAAAVAVVYALVIGLFVYRRLSWKDLWRALVET 271 (416)
T ss_pred -------------hHHHHHHHHHhcchHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHhhhcccChhhhhHHHHHH
Confidence 0000011111111 1122222233333442 3333332222 22222 3444444443332
Q ss_pred ---ChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccc
Q 010427 362 ---SYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAI 438 (511)
Q Consensus 362 ---dw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~ 438 (511)
.-.+.+.+++.-+++..+..+|+.+.+++.+....+ ++.....+..++..++..+++-+|+..+..|++. ...+.
T Consensus 272 ~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~-~~~~~l~l~~l~~lilG~~m~~~a~~ii~~pi~~-P~~~~ 349 (416)
T PF06808_consen 272 ARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSG-SPWLVLLLIMLILLILGMFMDTTAAIIIVAPILA-PIAQA 349 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCc-chHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHH
Confidence 334677788888899999999999999999876543 1111223334566778899999999999999654 45556
Q ss_pred cCcchhHHHHHHHHHHhhhcChh-hhhhhhHHHHH-hhhhccCCCCceeecchhhhhhhHHHHHHHH
Q 010427 439 SESEEKKAWLILAWVSTVAGNLS-LLGSAANLIVC-EQARRSKPSGYTLSFWTHLKFGLPSTIVITA 503 (511)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~gg~lT-piGs~aNliv~-~~~~~~~~ggy~i~f~df~k~G~plt~l~~i 503 (511)
.|.||. .+.+.......-|+.| |+|. |+.+. +.+ + .++.|..|.-+|.......
T Consensus 350 ~Gidpi-~~g~~~~~~~~ig~iTPPvgl--~lfva~~ia------~--~~~~~i~~~~~Pf~~~~~~ 405 (416)
T PF06808_consen 350 LGIDPI-HFGVFMFYNAEIGLITPPVGL--NLFVAAGIA------G--VPMEKIFRGILPFIFVLLV 405 (416)
T ss_pred hCcchh-hHHHHHHHHHHhcCCCCCccH--HHHHHHHHh------C--CCHHHHHHHHHHHHHHHHH
Confidence 788885 4445555556666666 7775 34443 332 2 2478888888888776544
No 64
>PRK09821 putative transporter; Provisional
Probab=98.91 E-value=9.6e-06 Score=86.30 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHhC----C---hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHH
Q 010427 37 AGALLGAMLMIIFKVITPEEAFAAI----D---LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFI 109 (511)
Q Consensus 37 ~~al~~~~~l~~~g~~~~~~a~~~~----~---~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~ 109 (511)
...++++....+..-.++++..+.+ . -...++++..-+++..+|+||.++++++.+.+..+ +++..+.+++.
T Consensus 30 ~alii~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~~~G-~k~~~~ai~i~ 108 (454)
T PRK09821 30 VALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTRKLG-DKRTIAALTLA 108 (454)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 4455555555566667777655433 2 23345555667788999999999999999987654 34455556666
Q ss_pred HHHHH--hhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhcc-CcccccccchhhhccCCCccHHHHHHhHHH
Q 010427 110 SALSS--ALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGS-SATPIGNPQNLVIALQSGISFGKFLLGILP 186 (511)
Q Consensus 110 ~~~lS--~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg-~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp 186 (511)
+++++ .|. |.+-+++.|+...++||.|.++..+.++++-+.+... +..|=..|+|. .+..|.+......+|++
T Consensus 109 ~~ilgIpvF~--dv~fvil~Pl~~~l~kk~~~~~~~l~l~~~~~l~~~h~~vPP~Pgp~~~--a~~Lg~d~g~~~l~Gii 184 (454)
T PRK09821 109 AFILGIPVFF--DVGFIILAPIIYGFAKVAKVSPLKFGLPVAGIMLTVHVALPPHPGPVAA--AGLLHADIGWLTIIGIA 184 (454)
T ss_pred HHHHhhHHHH--HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHcccccCCChHHHHH--HHHhCCCHHHHHHHHHH
Confidence 66665 555 5777899999999999999998888888764444333 34556666664 46667888888888777
Q ss_pred HHHHHHH
Q 010427 187 SMLVGVF 193 (511)
Q Consensus 187 ~~ii~l~ 193 (511)
..+...+
T Consensus 185 vaip~~i 191 (454)
T PRK09821 185 ISIPVGI 191 (454)
T ss_pred HHHHHHH
Confidence 6665543
No 65
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=98.90 E-value=3.5e-05 Score=81.55 Aligned_cols=345 Identities=13% Similarity=0.128 Sum_probs=187.1
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHH
Q 010427 55 EEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAK-DLLCRICFISALSSALF-TNDTCCVILTEFVLK 132 (511)
Q Consensus 55 ~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~-~ll~~~~~~~~~lS~fl-sN~~t~~i~~Pi~~~ 132 (511)
++.+++.|+.++.-+=--...++.++++|+.+++-+......++.| .+-..-...+.++++.. |+.++++.+-.+.+.
T Consensus 45 ~~~~~~~~s~~LlAIPlFil~G~lm~~~Gi~~rl~~~~~~lvG~~rGGLa~v~v~as~~fgaiSGSs~A~~aaiG~i~iP 124 (425)
T PRK15060 45 QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAMIMASLSGSAVADTAAVAALLVP 124 (425)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 4566777877776666556677889999999999886554444433 33333444555555544 456667788888888
Q ss_pred HHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc-CCCccHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhhccc
Q 010427 133 IARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL-QSGISFGKFLLGIL-PSMLVGVFVNTLILLCMYWRILSVK 210 (511)
Q Consensus 133 ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-~~~~~f~~f~~~~l-p~~ii~l~~~~~~~~~~~~~~Lp~~ 210 (511)
.=+|.|.|+..-.=.++-++.+| .+-| =+.+++++. ..+.|..|-+..++ |-.+.+..+ ....++ ..+|
T Consensus 125 ~M~k~GY~~~~aag~~aasg~lG-~lIP--PSi~mIiy~~~~~~Si~~LF~AGiiPGll~~~~~----~~~~~~--~a~~ 195 (425)
T PRK15060 125 MMRSANYPVNRAAGLIASGGIIA-PIIP--PSIPFIIFGVSSGLSISKLFMAGIAPGIMMGATL----MLTWWW--QASR 195 (425)
T ss_pred HHHHcCCCHHHHHHHHHHhccCC-ccCC--cHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHHHHh--eeec
Confidence 88999998754333333333332 2222 112345553 45789988888776 444433322 111111 1111
Q ss_pred ccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccc
Q 010427 211 KDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIEL 290 (511)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (511)
++ .++. + +. + +
T Consensus 196 ~~----------~~~~---~---~~------~-----~------------------------------------------ 206 (425)
T PRK15060 196 LN----------LPRQ---P---KA------T-----M------------------------------------------ 206 (425)
T ss_pred CC----------CCCC---C---CC------C-----H------------------------------------------
Confidence 00 0000 0 00 0 0
Q ss_pred cCCcccccccccCCcccchhhHHHHH-HHHHHHHHHHHHHHhC-CcHHHHHHHH---HHHH--HHhccCChHHH---Hhh
Q 010427 291 GVSPKLAEGKKDNTQKWDWKRVSWKT-CTYLVILGMLIALLMG-LNMSWTALTA---ALVL--VVLDFKDAMPC---LDK 360 (511)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~-l~~~~~al~~---a~~l--~~~~~~~~~~~---~~~ 360 (511)
.+..+..++. ..+.+-+..+-..+.| ..+.-.+..+ ++++ +..+..+.|+. +++
T Consensus 207 ----------------~~~~~~~~~a~~~l~~pviilggI~~Gi~TpTEAaava~~yal~v~~~iyr~l~~~~l~~~l~~ 270 (425)
T PRK15060 207 ----------------REIWQSLVSGIWALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYREMTFSTLYHVLIN 270 (425)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 0000111111 1111111222233445 3333333222 3322 22344444333 221
Q ss_pred ---cChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcc
Q 010427 361 ---VSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGA 437 (511)
Q Consensus 361 ---idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~ 437 (511)
..=.+.+.+++-.+++..+..+|+.+.+++.+..... ++..-..+..++..++..+++.+++..++.|+. .-+++
T Consensus 271 t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~-~~~~~Ll~i~~~~lvlGmfld~~a~ili~~Pil-~Pi~~ 348 (425)
T PRK15060 271 AAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVD-SPRLLFIVIMVAIMVVGMVMDLTPTVLILTPVL-MPLVK 348 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHH
Confidence 3345667778888899999999999999999875532 111111223446677899999999999999955 45666
Q ss_pred ccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHH
Q 010427 438 ISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAI 504 (511)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv 504 (511)
..|.||.....+.+....+|..--|+|. |+.+.... .+ .++.|..|--+|.-+..+++
T Consensus 349 ~~Gidpv~fgii~~~~~~ig~iTPPvG~--~lfv~~~i-----a~--~~~~~i~~~~~Pf~~~~~~~ 406 (425)
T PRK15060 349 EAGIDPIYFGVMFIINCSIGLITPPVGN--VLNVISGV-----AK--LKFDDAVRGVFPYVLVLYSL 406 (425)
T ss_pred HcCCChHHHHHHHHHHHHHhCCCCCccH--HHHHHHHh-----cC--CCHHHHHHHHHHHHHHHHHH
Confidence 6788875322223333334444447775 55554321 12 46888889888887766553
No 66
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=98.90 E-value=8.2e-06 Score=86.36 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHhCC-------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHH
Q 010427 34 GRTAGALLGAMLMIIFKVITPEEAFAAID-------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRI 106 (511)
Q Consensus 34 ~~~~~al~~~~~l~~~g~~~~~~a~~~~~-------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~ 106 (511)
+.....++++....+.+-.+++|..+.+. -+.-+.++..-+++..+|+||..+++|+.+.++. ++++..+.+
T Consensus 23 ~pf~alli~a~~~gl~~Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~-G~kr~~~a~ 101 (438)
T PRK14984 23 NGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKF-GKKHIQWAV 101 (438)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHh-CccchHHHH
Confidence 33355666666666777788877665432 2333455555778889999999999999988654 345555565
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHH
Q 010427 107 CFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILP 186 (511)
Q Consensus 107 ~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp 186 (511)
.+.+++++-=+-=|..-+++.|+..+++|+.|.+...+..++..+....-.+ .-++|--+-+.+..|.+....+.+|++
T Consensus 102 ~l~~~il~ipvF~dv~fvil~Pi~~~lak~~~~~~~~~~~~l~~gl~~th~~-vPP~Pgpla~a~~lgadlG~~il~Gli 180 (438)
T PRK14984 102 VLTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGF-LPPHPGPTAIATIFNADMGKTLLYGTI 180 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHhC-CCCCCcHHHHHHHhCCCHHHHHHHhHH
Confidence 6656665522223455568999999999999999777777766654443222 236776677778888899999998887
Q ss_pred HHHHHH
Q 010427 187 SMLVGV 192 (511)
Q Consensus 187 ~~ii~l 192 (511)
+.+...
T Consensus 181 vaip~~ 186 (438)
T PRK14984 181 LAIPTV 186 (438)
T ss_pred HHHHHH
Confidence 766553
No 67
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.83 E-value=8.8e-07 Score=87.78 Aligned_cols=140 Identities=24% Similarity=0.390 Sum_probs=93.6
Q ss_pred HHhcCCChHHHHHhCC--hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHH
Q 010427 47 IIFKVITPEEAFAAID--LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCV 124 (511)
Q Consensus 47 ~~~g~~~~~~a~~~~~--~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~ 124 (511)
+..|..+|+...+.+. .+++.++ ||++.....--.+.-.+-.++.-..++...+-+..|+.++++|+|+|..++++
T Consensus 76 v~iGmt~p~~v~~Ei~aN~eVlLLL--~FMVAGIyFMKqLLLfiFtklLl~iRSK~~LSlaFc~~aAfLSAFLDALTVvA 153 (516)
T COG3067 76 VAIGMTSPEHVKEEVAANLEVLLLL--MFMVAGIYFMKQLLLFIFTRLLLSIRSKMLLSLAFCVAAAFLSAFLDALTVVA 153 (516)
T ss_pred HHHcCCCHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 4568888888777653 4444444 45555554433344444444332223344455678999999999999988877
Q ss_pred HHHHHHH-------HHHHHc------------CCCch-------------HHHHHHHHHHhhccCcccccccchhhhccC
Q 010427 125 ILTEFVL-------KIARQN------------GVSPH-------------PFLLALASSANVGSSATPIGNPQNLVIALQ 172 (511)
Q Consensus 125 i~~Pi~~-------~ia~~~------------~~~p~-------------~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~ 172 (511)
..+.+.. +.+... ++++. .++|--+.+.-+||.+|.+|.|||+++..+
T Consensus 154 VvISVavgFy~iYH~VaSg~~~~~~~D~~~D~~i~e~~~~~LE~fRaFLRSLmMHagVGTALGGVmTmVGEPQNLiIa~~ 233 (516)
T COG3067 154 VVISVAVGFYGIYHRVASGRTESDDTDITDDSHIDEHYKVVLEQFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQ 233 (516)
T ss_pred eeeeehhhhhhhhhhhccCCCcccccCccccccCChHHHHHHHHHHHHHHHHHHhhccchhhcceeeeccCchhhhhhhh
Confidence 6554433 222221 22221 356667789999999999999999999999
Q ss_pred CCccHHHHHHhHHHHH
Q 010427 173 SGISFGKFLLGILPSM 188 (511)
Q Consensus 173 ~~~~f~~f~~~~lp~~ 188 (511)
.|-.|.||+.-+.|+.
T Consensus 234 AgW~F~eFflrm~PVt 249 (516)
T COG3067 234 AGWHFGEFFLRMAPVT 249 (516)
T ss_pred ccccHHHHHHHhcCch
Confidence 9999999998776543
No 68
>PRK10472 low affinity gluconate transporter; Provisional
Probab=98.82 E-value=3.7e-05 Score=81.68 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHhC----C--h-hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHH
Q 010427 36 TAGALLGAMLMIIFKVITPEEAFAAI----D--L-SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICF 108 (511)
Q Consensus 36 ~~~al~~~~~l~~~g~~~~~~a~~~~----~--~-~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~ 108 (511)
....++++..+.+..-.++++..+.+ . + .....++...+++..+|+||..+++++.+.+.. +++|..+.+.+
T Consensus 29 fialli~Alivgl~~Gmp~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~f-G~kr~~~A~~l 107 (445)
T PRK10472 29 FVALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSF-GHSRAHYAIGL 107 (445)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHc-CcccHHHHHHH
Confidence 35466677777777777777655443 3 1 223455555778899999999999999987664 34566666666
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhc-cCcccccccchhhhccCCCccHHHHHHhHHHH
Q 010427 109 ISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVG-SSATPIGNPQNLVIALQSGISFGKFLLGILPS 187 (511)
Q Consensus 109 ~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~G-g~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~ 187 (511)
.+++.+-=+==|...+++.|++..++|+.|.+...+.+|++.+-... ++.-| +|--+-+.+..|.+....+.+|+++
T Consensus 108 ~g~iv~iPvF~dv~fvil~Pl~~~la~~~~~s~~~~~~~l~~gl~~~H~~vPP--~Pgp~a~a~~l~adlG~~il~Gliv 185 (445)
T PRK10472 108 AGLICALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP--GPAPMLLASQMNADFGWMILIGLCA 185 (445)
T ss_pred HHHHHhhHHHHhhHHHHhHHHHHHHHHHHCCChHHHHHHHHHHHHhcccccCC--CcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666633336777889999999999999999999888888774443 34444 5545566677788899999888877
Q ss_pred HHHHHH
Q 010427 188 MLVGVF 193 (511)
Q Consensus 188 ~ii~l~ 193 (511)
.+...+
T Consensus 186 aip~~~ 191 (445)
T PRK10472 186 AIPGMI 191 (445)
T ss_pred HHHHHH
Confidence 666543
No 69
>PRK10034 fructuronate transporter; Provisional
Probab=98.81 E-value=5.8e-05 Score=80.30 Aligned_cols=154 Identities=11% Similarity=0.101 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHh----CC---hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHH
Q 010427 36 TAGALLGAMLMIIFKVITPEEAFAA----ID---LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICF 108 (511)
Q Consensus 36 ~~~al~~~~~l~~~g~~~~~~a~~~----~~---~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~ 108 (511)
....++++..+.+..-.++.+..+. +. .+..+.+....+++..+|+||..+++++.+.+..++. |..+.+++
T Consensus 28 fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~k-r~~~a~~l 106 (447)
T PRK10034 28 MVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLR-YVQLSVII 106 (447)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 3545667777777767777664433 32 3445566666779999999999999999988765433 34444444
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHH
Q 010427 109 ISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSM 188 (511)
Q Consensus 109 ~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ 188 (511)
.+.+++--+==|....++.|++.+++|+.+.++..+.+|++.+....-.+-| =+|--+-+.+..+.+..+.+.+|++..
T Consensus 107 ~g~llGi~vF~dv~~v~laPi~~~lak~~~~s~~~~~~~l~~gl~~~h~lvP-P~Pgpla~a~~l~a~lG~~il~Gl~v~ 185 (447)
T PRK10034 107 IGLIFGLAMFYEVAFIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFP-PQPGPVALVNAYGADMGMVYIYGVLVT 185 (447)
T ss_pred HHHHHhhHHHHHhHHHhhHHHHHHHHHHhCcCHHHHHHHHHHHHHHhhcccC-CCCcHHHHHHHhCCcHHHHHHHhhHHH
Confidence 4444432222345667899999999999999999999998877776544433 155555666777888999998887665
Q ss_pred HHH
Q 010427 189 LVG 191 (511)
Q Consensus 189 ii~ 191 (511)
+..
T Consensus 186 ip~ 188 (447)
T PRK10034 186 IPS 188 (447)
T ss_pred HHH
Confidence 554
No 70
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=98.73 E-value=4.9e-07 Score=95.95 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=124.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHH
Q 010427 332 GLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIII 411 (511)
Q Consensus 332 ~l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~ 411 (511)
|+..+...-+|..++++.=..+++ ++||++++++.++......+++||..|...+.+.+..+.++......+.+++
T Consensus 17 g~~~g~~g~~g~~~~~~~~~~~~~----~~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~~~~llipii~ 92 (430)
T TIGR00770 17 GIGLGYAGGLGVLILCFGFGLKPG----KIPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPKYITILAPSVT 92 (430)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcchhhhhHHHHH
Confidence 477777777777777765334443 5999999999999999999999999999887666543322223334556677
Q ss_pred HHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhh
Q 010427 412 LVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHL 491 (511)
Q Consensus 412 ~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~ 491 (511)
.+.|-+.+|.-.+..+.|+ ...++...+.|+.....+...++++|+..||++...|.+ .+..+. .| ++|+|++
T Consensus 93 ~lfs~~~g~~~~~l~f~PI-~i~la~~lG~d~i~~~ai~~~aa~iG~~as~in~~~~~~-ig~~~~---~G--i~f~~~l 165 (430)
T TIGR00770 93 YFLTILAGTGHVVYSTLPV-IAEVAKEQGIKPERPLSLAVVSSQIAITASPVSAAVVFM-SAILEP---LG--IEYLDLL 165 (430)
T ss_pred HHHHHHhchHHHHHHHHHH-HHHHHHHhCCCChhHHHHHHHHHHHHHHhhcccHHHHHH-HHHHHh---CC--CCHHHHH
Confidence 8888889999889999994 467777888888766666777788999999998854444 443311 14 4799999
Q ss_pred hhhhHHHHHHHHHHHHH
Q 010427 492 KFGLPSTIVITAIGLAL 508 (511)
Q Consensus 492 k~G~plt~l~~iv~~~~ 508 (511)
....|.+++.++++..+
T Consensus 166 ~~rip~~~v~l~v~~~~ 182 (430)
T TIGR00770 166 MVTIPSTFLGCMLTAFF 182 (430)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988776554
No 71
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=98.70 E-value=0.00018 Score=75.91 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHH----hCCh---hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHH
Q 010427 37 AGALLGAMLMIIFKVITPEEAFA----AIDL---SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFI 109 (511)
Q Consensus 37 ~~al~~~~~l~~~g~~~~~~a~~----~~~~---~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~ 109 (511)
....+++.+..+.+-.+..+..+ ++.. ..-..+...-+++..+|+||..+++|+.+.++. +++|..+.+.+.
T Consensus 27 lal~l~al~~gl~~Gm~~~~i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~-G~kr~~~Al~l~ 105 (442)
T COG2610 27 LALLLVALLVGLLGGMPLLKVVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKF-GEKRALLALVLA 105 (442)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-CcchHHHHHHHH
Confidence 44455554444444466665553 3332 222233333567889999999999999988664 456688888888
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHH
Q 010427 110 SALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSML 189 (511)
Q Consensus 110 ~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~i 189 (511)
+++++-=+.=+...+++.|++.+++|+.|+++..+..|++-+...-.+.-|= +|.-+-.....+.+...-..++....+
T Consensus 106 g~i~~~~vF~dv~~v~l~Pia~alak~~~is~~~i~v~la~g~~~~h~~vpP-~Pgpia~a~~~~a~~g~~il~g~ivai 184 (442)
T COG2610 106 GLILGIPVFFDVGFVLLIPLAFALAKEAGISLLKIAVPLAAGLSVTHMFVPP-HPGPIAAAGPFGADIGTVILYGLIVAI 184 (442)
T ss_pred HHHHhhhHHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcccCCC-CCchhhhhhhcCcchhHHHHHHHHHHH
Confidence 8898866888999999999999999999999999888888777543333332 444444455556665555555554444
Q ss_pred H
Q 010427 190 V 190 (511)
Q Consensus 190 i 190 (511)
.
T Consensus 185 p 185 (442)
T COG2610 185 P 185 (442)
T ss_pred H
Confidence 4
No 72
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=98.68 E-value=0.0004 Score=73.31 Aligned_cols=347 Identities=15% Similarity=0.123 Sum_probs=195.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH---hccCchhHHHHHHHHHHHHHhhcchhhH-HHHHHHHHHHHHHHcCC
Q 010427 64 SVLGLLFGTMVVSFYLERAGMFKYLEIVLSW---RSRGAKDLLCRICFISALSSALFTNDTC-CVILTEFVLKIARQNGV 139 (511)
Q Consensus 64 ~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~---~~~~~~~ll~~~~~~~~~lS~flsN~~t-~~i~~Pi~~~ia~~~~~ 139 (511)
..-..+...+-.+..+++.|.-+.+.+...| +-|+++.++....+++.++|-++++-+- .+++.-..+.+-.+.|+
T Consensus 75 glGl~Im~~~GFa~YM~hIGA~~~lV~~~~kPL~~ik~pYlll~~~~llg~llsl~IpSAaGLa~lLmatl~PvLi~~Gv 154 (455)
T PRK09804 75 GLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGV 154 (455)
T ss_pred cHHHHHHHHHhHHHHHHhhCccHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhccccHHhHHHHHHHHHHHHHHHcCC
Confidence 3456777788889999999999999987764 4456777777888899999977765544 44455555566677888
Q ss_pred CchHHHHHHHHHHhh-ccCcccccccchhhhccCCCccHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcc
Q 010427 140 SPHPFLLALASSANV-GSSATPIGNPQNLVIALQSGISFGKFL-LGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAF 217 (511)
Q Consensus 140 ~p~~~l~~~a~aan~-Gg~~TpiG~p~Nliv~~~~~~~f~~f~-~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~ 217 (511)
+|-. +.+..+.. .=..+| ++|.|..+.+..|++..||. .+=+|.++..+++ ..+..++..|+..+|+++++
T Consensus 155 s~~~---AaaVia~t~~i~~gP-~s~~~v~aA~~~g~~v~~y~~~~q~p~~i~~i~~-iai~h~fwqr~~Dkk~~~~~-- 227 (455)
T PRK09804 155 SRLS---AVAVIATTMSIEWGI-LETNSIFAAQVAGMKIATYFFHYQLPVASCVIIS-VAISHFFVQRAFDKKDKNIN-- 227 (455)
T ss_pred CHHH---HHHHHHhhhcccCCC-CCchHHHHHHHcCCChhheeeeccHHHHHHHHHH-HHHHHHHHHHHHHhhccccc--
Confidence 8643 22222221 112444 35567777788889999998 5667776544433 22333332344432211100
Q ss_pred ccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccc
Q 010427 218 AEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLA 297 (511)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (511)
+++. +. +
T Consensus 228 --~~~~-~~---------------~------------------------------------------------------- 234 (455)
T PRK09804 228 --HEQA-EQ---------------K------------------------------------------------------- 234 (455)
T ss_pred --cccc-cc---------------c-------------------------------------------------------
Confidence 0000 00 0
Q ss_pred cccccCCcccchhhHH-HHHHHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHHH---hccCChHHHHhhcC------
Q 010427 298 EGKKDNTQKWDWKRVS-WKTCTYLVILGMLIALL-----MGLNMSWTALTAALVLVV---LDFKDAMPCLDKVS------ 362 (511)
Q Consensus 298 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~~-----~~l~~~~~al~~a~~l~~---~~~~~~~~~~~~id------ 362 (511)
+.+++.+.+.-.+ ..+++ ++ ++.-.... ..++...+-+++..+-++ .|.++.+|.+++++
T Consensus 235 ---~~~~~~p~~YAlLP~lPli-Li-l~~~f~~~~~~~~i~l~v~~am~is~~ia~l~e~ir~r~~k~~~~~~~~ff~GM 309 (455)
T PRK09804 235 ---ALDNVPPLYYAILPVMPLI-LM-LGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGM 309 (455)
T ss_pred ---cccccCchHHHHHHHHHHH-HH-HHHHhhcccccCceeecHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 0000011111111 11221 11 11000001 123444444444444333 34455554433221
Q ss_pred ----hhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhcc
Q 010427 363 ----YSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA-SNVPTVLLLGARVAASAGA 437 (511)
Q Consensus 363 ----w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i-sN~a~~~l~~P~i~~~~a~ 437 (511)
-+++-++.+-=+.+.+++..|+.|.+-+..+... .+......++..++.+.+-.+ |.+|..-.+.|. ....|+
T Consensus 310 G~~f~~VV~LIVAA~vFa~GL~aiG~Id~Li~~~~~~g-~g~~~~~lv~~~i~~l~a~l~GSGnAaffAF~~l-vp~iA~ 387 (455)
T PRK09804 310 GTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSG-LGGIGVMIIMALVIAICAIVMGSGNAPFMSFASL-IPNIAA 387 (455)
T ss_pred HHHHHHHHHHHHhHHHHHhHHHHhhHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhhhcCchHHHHHHHHH-hHHHHH
Confidence 1344555555568899999999999988875432 111111122333344443333 577777888884 456777
Q ss_pred ccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHH
Q 010427 438 ISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGL 506 (511)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~ 506 (511)
..|.++....+.....++.|-..+|++-.. +.+-+ --+++-.|-.|--.+.++..+++..
T Consensus 388 ~~G~~~~~l~lpmq~as~lgRt~SPVagvi-IavAg--------~a~vSP~eiVKRTavPml~g~i~~~ 447 (455)
T PRK09804 388 GLHVPAVVMIMPMHFATTLARAVSPITAVV-VVTSG--------IAGVSPFAVVKRTAIPMAVGFVVNM 447 (455)
T ss_pred HcCCCHHHHHHHHHHHHhhccccCchhhHH-hhhcc--------ccCCCHHHHHHHhHHHHHHHHHHHH
Confidence 788888776677788889999999998532 33333 3345788999998888877776554
No 73
>PRK09921 permease DsdX; Provisional
Probab=98.65 E-value=0.0004 Score=74.21 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHh----CCh---hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHHHHHH
Q 010427 37 AGALLGAMLMIIFKVITPEEAFAA----IDL---SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLCRICF 108 (511)
Q Consensus 37 ~~al~~~~~l~~~g~~~~~~a~~~----~~~---~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~~~~~ 108 (511)
..-+.+++.+-+..-.+++|..+. +.. .....++...+++..||+||..+++++.+.+..+ +.......+.+
T Consensus 31 ~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~~~~~~~~a~~~~gl 110 (445)
T PRK09921 31 LALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSADVIMVLVGL 110 (445)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 434556666666667777765543 331 2234555667888999999999999999754422 23334433344
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHH
Q 010427 109 ISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSM 188 (511)
Q Consensus 109 ~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ 188 (511)
+++ .+.|. +...+++.|++.+++|+.|.++.+..++.+.+....-..-| ++|.-+.+.+..|.+...+...++|..
T Consensus 111 l~~-IpvF~--~~~~vil~Pl~~~lak~~~~s~~~~~~~~~~~~~~~h~~vP-p~Pg~~~~a~~lg~~lg~~~l~Gl~~~ 186 (445)
T PRK09921 111 ICG-ITLFV--EVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVP-PHPAALFVANKLGADIGSVIVYGLLVG 186 (445)
T ss_pred HHc-ccHHH--HhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhHhcCC-CCcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333 34443 34456899999999999999988888887666554333323 577766667778899999999998887
Q ss_pred HHHHHH
Q 010427 189 LVGVFV 194 (511)
Q Consensus 189 ii~l~~ 194 (511)
+...++
T Consensus 187 i~~~~i 192 (445)
T PRK09921 187 LMASLV 192 (445)
T ss_pred HHHHHH
Confidence 655433
No 74
>COG1288 Predicted membrane protein [Function unknown]
Probab=98.65 E-value=8.9e-06 Score=84.10 Aligned_cols=127 Identities=14% Similarity=0.155 Sum_probs=90.5
Q ss_pred HHHhcHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccC
Q 010427 79 LERAGMFKYLEIVLSWRSRG-AKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSS 157 (511)
Q Consensus 79 l~~tG~~~~ia~~l~~~~~~-~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~ 157 (511)
++|||.+|.--..+.++.++ +..++..++.+-++..++.-.-=-++-+.|+.+.+..+.|.|+..-.-.+-.++.+|.+
T Consensus 113 vnkTGaid~Gi~ali~k~kG~e~llI~~l~ilFslgGt~~Gm~EEaiaFypIliPv~ialGyDsi~~va~i~lgt~iG~~ 192 (481)
T COG1288 113 VNKTGAIDAGIAALIRKTKGKEFLLIPVLFILFSLGGTVFGMGEEAIAFYPILIPLMVALGYDSITGVAIIYIGTQIGFA 192 (481)
T ss_pred eeccchHHHHHHHHhhhcCCCeEEEeeHHHHHHHhccccccchHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhccchh
Confidence 69999999888877777664 56666677777777777776666678889999999999999987766666677777544
Q ss_pred cccccccchhhhcc-CCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 010427 158 ATPIGNPQNLVIAL-QSGISFGKFLLGILPSMLVGVFVNTLILLCMYWRI 206 (511)
Q Consensus 158 ~TpiG~p~Nliv~~-~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~~ 206 (511)
.+- =||-...+++ ..|++|.|=+...+...++..+....+++++.+|.
T Consensus 193 ~St-~NPF~~~IAq~iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya~Kv 241 (481)
T COG1288 193 AST-MNPFATVIAQNIAGIPFLSGMGLRIVVWVVFTLISIIYVYWYASKV 241 (481)
T ss_pred hhh-cCchHHHHHhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4887776664 46787776655556666666666555666555543
No 75
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=98.62 E-value=0.0003 Score=72.49 Aligned_cols=326 Identities=12% Similarity=0.104 Sum_probs=178.9
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 010427 73 MVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCR-ICFISALSSALF-TNDTCCVILTEFVLKIARQNGVSPHPFLLALAS 150 (511)
Q Consensus 73 ~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~-~~~~~~~lS~fl-sN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~ 150 (511)
...+..+++.|+.+|+-+.....-++.|.-+.- -...+.++++.. |..+.++.+-.+.+..=++.|.++..--=-.+-
T Consensus 17 IlaG~lM~~gGi~~Rli~fa~a~vGh~rGGL~~v~i~~s~lf~~iSGSa~Ad~aa~Gsi~ip~M~k~GY~~~~aa~l~a~ 96 (379)
T COG1593 17 ILAGELMNSGGIAKRLIDFANALVGHIRGGLAYVNIVASMLFGGISGSAVADAAALGSILIPEMKKRGYPAAFAAALTAA 96 (379)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhCCccchHHHHHHHHHHHHhcccccHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHh
Confidence 334577899999999998766555554433333 333344444333 345556777788888889999988664444444
Q ss_pred HHhhccCcccccccchhhhcc-CCCccHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcC
Q 010427 151 SANVGSSATPIGNPQNLVIAL-QSGISFGKFLLGIL-PSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCF 228 (511)
Q Consensus 151 aan~Gg~~TpiG~p~Nliv~~-~~~~~f~~f~~~~l-p~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~ 228 (511)
++.+|-..-| +.++++++ ..+.|..+-+..++ |..+.++.+.. ..++..||+-.++ +
T Consensus 97 s~~ig~lIPP---Si~~IIyg~~a~~SI~~LF~aGi~PGlLl~~~lm~-~~~~~a~~~~~~~--------------~--- 155 (379)
T COG1593 97 SGIIGPLIPP---SIPFIIYGVAAGVSIGKLFVAGIVPGLLLTLALMV-VAYIVARKRGYPR--------------E--- 155 (379)
T ss_pred hccccccCCC---CchHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCc--------------c---
Confidence 5555443333 33456664 44688888877775 54444433321 1111111110000 0
Q ss_pred CCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccc
Q 010427 229 SPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWD 308 (511)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
.|. ..++
T Consensus 156 ------------------~~~-------------------------------------------------------s~~e 162 (379)
T COG1593 156 ------------------ERA-------------------------------------------------------SFKE 162 (379)
T ss_pred ------------------cCC-------------------------------------------------------CHHH
Confidence 000 0000
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHHhC-CcHHHHHHHHHHH-----HHHhccCChHHHH----hh--cChhHHHHHHHHHHH
Q 010427 309 WKRVSWKTC-TYLVILGMLIALLMG-LNMSWTALTAALV-----LVVLDFKDAMPCL----DK--VSYSLLIFFCGMFIT 375 (511)
Q Consensus 309 ~~~~~~~~~-~~~i~~~~l~~~~~~-l~~~~~al~~a~~-----l~~~~~~~~~~~~----~~--idw~~ll~f~glf~l 375 (511)
+-+..++.. .+..-+..+.+...| ..+.-.+.+++.. ++..+..+.+|.+ +. ..-.+++.+++--.+
T Consensus 163 ~~~~~~~a~~aLllpvIIigGi~~G~fTpTEaa~iav~yal~v~~~vYr~l~~~~l~~~l~~a~~~t~~Vm~iva~a~~f 242 (379)
T COG1593 163 RLKAAVKALWALLLPVIIIGGIRSGIFTPTEAAAIAVLYALLVGAFVYRELTLKELPKVLLEAVKTTAVVMFIVAAAAAF 242 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111 111111122223334 3333333333322 2233433333322 11 334556677777888
Q ss_pred HHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHh
Q 010427 376 VEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVST 455 (511)
Q Consensus 376 ~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~ 455 (511)
+..++..++.+.+++++....+ ++..-..+..++..++..|++-.|+..++.|+. .-++.+.|.||...-.+.+.-.+
T Consensus 243 ~~~lt~~~vp~~la~~~~~~~~-~~~~~ll~inl~llvvG~fmd~~a~ilil~Pil-~Pi~~~~GIDPvhfGvv~v~Nl~ 320 (379)
T COG1593 243 AWLLTVEQVPQQLADWLLSLSD-SPLVVLLVINLLLLVVGTFMDLTAAILILTPIL-LPIAAALGIDPVHFGVVFVLNLS 320 (379)
T ss_pred HHHHHHhccHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHhCCCceeeHHHHHHHHH
Confidence 8899999999999999876532 111111223446667899999999999999955 45555678887655555666567
Q ss_pred hhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHH
Q 010427 456 VAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITA 503 (511)
Q Consensus 456 ~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~i 503 (511)
+|..--|+| .|+.+...- ++ .+..+..|--.|.-+..++
T Consensus 321 IGliTPPvG--~~Lfv~s~V-----~~--~~~~~~~k~i~Pfl~~~~~ 359 (379)
T COG1593 321 IGLITPPVG--MVLFVASAV-----GK--VPIEAVIKAILPFLVALIL 359 (379)
T ss_pred hhCCCCCcc--hhHHHHHhh-----cC--CCHHHHHHHHHHHHHHHHH
Confidence 777777999 456554421 23 3578899988887765544
No 76
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=98.61 E-value=5.4e-06 Score=85.15 Aligned_cols=144 Identities=18% Similarity=0.241 Sum_probs=123.7
Q ss_pred HHhcCCChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchh
Q 010427 47 IIFKVITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTND 120 (511)
Q Consensus 47 ~~~g~~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~ 120 (511)
++++..+.++.++..- -.+.+.+++....+..+..+++-+.+++++....+++..+++.++++..++.+|+|-+
T Consensus 208 ~vYr~l~~~~l~~~l~~a~~~t~~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~~ 287 (379)
T COG1593 208 FVYRELTLKELPKVLLEAVKTTAVVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDLT 287 (379)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccHH
Confidence 5678888887665432 3446788888899999999999999999998888889989999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc-CCCccHHHHHHhHHHHHHHHH
Q 010427 121 TCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL-QSGISFGKFLLGILPSMLVGV 192 (511)
Q Consensus 121 ~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-~~~~~f~~f~~~~lp~~ii~l 192 (511)
++.++++|+.+.++++.|+||..+-+...+..++|...-|+| .|+++.+ -++.+..+..|..+|....-+
T Consensus 288 a~ilil~Pil~Pi~~~~GIDPvhfGvv~v~Nl~IGliTPPvG--~~Lfv~s~V~~~~~~~~~k~i~Pfl~~~~ 358 (379)
T COG1593 288 AAILILTPILLPIAAALGIDPVHFGVVFVLNLSIGLITPPVG--MVLFVASAVGKVPIEAVIKAILPFLVALI 358 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeeHHHHHHHHHhhCCCCCcc--hhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888999 4666654 467999999999888765433
No 77
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=98.60 E-value=0.0003 Score=77.96 Aligned_cols=101 Identities=10% Similarity=-0.006 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcc
Q 010427 363 YSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESE 442 (511)
Q Consensus 363 w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~ 442 (511)
-.+.+..++.-+++..+..+|+.+.+++.+....+.+...-..+..++..++..+++.+|+..++.|++. -+....|.|
T Consensus 391 ~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~~~~~Lll~~l~~lilGm~l~~~a~~ii~~pi~~-P~l~~lGid 469 (613)
T TIGR02123 391 VPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGNLFLLLILTMIACIILGMGLPTTANYIITATLAA-PALIALGVP 469 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHHHHcCCC
Confidence 4566777778888999999999999999987654211111122234567788999999999999999654 444557888
Q ss_pred hhHHHHHHHHHHhhhcChh-hhhh
Q 010427 443 EKKAWLILAWVSTVAGNLS-LLGS 465 (511)
Q Consensus 443 ~~~~~~~l~~~~~~gg~lT-piGs 465 (511)
|-. +-+.......-|+.| |+|-
T Consensus 470 pi~-~~~~v~~~~~ig~iTPPvgl 492 (613)
T TIGR02123 470 PIA-AHMFVFYFGILADITPPVAL 492 (613)
T ss_pred HHH-HHHHHHHHHHHHcCCCCchH
Confidence 753 333333334445555 6664
No 78
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=98.60 E-value=3.1e-06 Score=88.95 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=118.2
Q ss_pred HHhcCCChHHHHHh----C------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhh
Q 010427 47 IIFKVITPEEAFAA----I------DLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSAL 116 (511)
Q Consensus 47 ~~~g~~~~~~a~~~----~------~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~f 116 (511)
.+.+.++.++..+. + .-.++.++++..+.+..++.+|+.+.+++.+...+.++...++...+...+++.|
T Consensus 232 ~~~r~~n~~~~~~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~~~~~~~~ll~~~l~~~~lg~~ 311 (388)
T TIGR00771 232 EFGRIVNRISPVKITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVDAAISFAKESGLGNIFVMWGATIGPFLMALI 311 (388)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34566776654422 1 2345788889999999999999999999998877666777777777777789999
Q ss_pred c-chhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc-cCCCccHHHHHHhHHHHHHHHH
Q 010427 117 F-TNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA-LQSGISFGKFLLGILPSMLVGV 192 (511)
Q Consensus 117 l-sN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~-~~~~~~f~~f~~~~lp~~ii~l 192 (511)
+ ++++....+.|++..++++.|++|..+.++..+++++|....|+| .|+++. +-.+.+..|..|..+|+.+.++
T Consensus 312 ~~s~~a~~~~~~PIl~pia~~~Gidpv~~gi~~~i~~~iG~~tpPv~--~~l~v~~gia~v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 312 TGSGNAPFIAFNTAIPPHAVELGYTHVNLGMPMAIAGALGRTASPIA--GVVVVCAGLAMVSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcHH--HHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Confidence 9 589999999999999999999999999999999999999999998 455554 4568999999999999887653
No 79
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=98.59 E-value=6.4e-05 Score=77.24 Aligned_cols=331 Identities=16% Similarity=0.193 Sum_probs=172.0
Q ss_pred hHHHHHhCC---hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 010427 54 PEEAFAAID---LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRS-RGAKDLLCRICFISALSSALFTNDTCCVILTEF 129 (511)
Q Consensus 54 ~~~a~~~~~---~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~-~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi 129 (511)
.+++.+.+| ..=-.+++-+|++.+.=---...++.-+.+.+.. +++....+.++.+.=++++|++..++..+-.
T Consensus 86 ~~~a~~Y~~srnytEplFVfvIMviA~SrPIl~~a~~~v~~iArlp~~s~~a~~~~~L~~~PLlGSfITEpaAMTlaA-- 163 (438)
T PF07399_consen 86 WKAAIAYLESRNYTEPLFVFVIMVIAASRPILQFAERLVRFIARLPKPSPVAWWWLILTLVPLLGSFITEPAAMTLAA-- 163 (438)
T ss_pred HHHHHHHHhccCCCccHHHHHHHHHHccchHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhhhhhhccHHHHHHHH--
Confidence 455555443 4445667777777664211122233333333322 2455566667777888999999988755432
Q ss_pred HHHHHHHc-CCCchHHHHHHH-----HHHhhccCcccccccchhhhccCCCcc----HHHHHHhHHHHHHHHHHHHHHHH
Q 010427 130 VLKIARQN-GVSPHPFLLALA-----SSANVGSSATPIGNPQNLVIALQSGIS----FGKFLLGILPSMLVGVFVNTLIL 199 (511)
Q Consensus 130 ~~~ia~~~-~~~p~~~l~~~a-----~aan~Gg~~TpiG~p~Nliv~~~~~~~----f~~f~~~~lp~~ii~l~~~~~~~ 199 (511)
+-++++. ..+|++-+--.. .--++||.+|+...||=+++.+.-+-+ +.+|-+. +.+++++.....
T Consensus 164 -llL~~~~f~~~~s~~lkYaTLGvLFvNISIGGtLT~fAAPPVLMVA~~w~Wd~~fM~~~FGWK----Aaiai~ina~~~ 238 (438)
T PF07399_consen 164 -LLLRDQFFRLGPSPRLKYATLGVLFVNISIGGTLTSFAAPPVLMVASTWGWDSAFMLTHFGWK----AAIAILINATVY 238 (438)
T ss_pred -HHHHHHhccCCCCHHHHHHHHHHHheEeeecccccccccCcceeEecccCCChHHHHHHcCHH----HHHHHHHHHHHH
Confidence 2234442 333333222222 234679999999999999998765432 3334221 344555556666
Q ss_pred HHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHH
Q 010427 200 LCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAA 279 (511)
Q Consensus 200 ~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~ 279 (511)
++++||.+.+-++.+ +. .
T Consensus 239 ~~~fRkel~~l~~~~------~~-------~------------------------------------------------- 256 (438)
T PF07399_consen 239 TLLFRKELARLPKTA------QA-------T------------------------------------------------- 256 (438)
T ss_pred HHHHHHHHHhccccc------cc-------c-------------------------------------------------
Confidence 777888874211100 00 0
Q ss_pred HHHHhhccccccCCcccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccCChHHHH-
Q 010427 280 EIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCTYLVILGMLIALLMGLNMSWTALTAALVLVVLDFKDAMPCL- 358 (511)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~al~~a~~l~~~~~~~~~~~~- 358 (511)
+.+++..++. ..+.=+++++.++.. +.| +.+.|++.++.++..+..+-+
T Consensus 257 ---------------------~~~~~~vP~~----v~~vHl~f~g~V~~a--hhp---~iF~G~lfLfFLGf~~ay~~yQ 306 (438)
T PF07399_consen 257 ---------------------TSSEERVPWW----VILVHLLFVGVVVFA--HHP---VIFMGALFLFFLGFTQAYKRYQ 306 (438)
T ss_pred ---------------------ccccCCCCHH----HHHHHHHHHHHHHHh--cCh---HHHHHHHHHHHHHHHHHHHhhc
Confidence 0000011111 111101112332211 222 235565555555543222212
Q ss_pred hhcChhHH---HHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 010427 359 DKVSYSLL---IFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASA 435 (511)
Q Consensus 359 ~~idw~~l---l~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~ 435 (511)
+++.++-- =||.+..++-+++|+- |+...+.. .++ ..++.-+..+|.+.+|.+.+-+-.- +
T Consensus 307 ~~l~Lre~lLVgFFLaGLVvlGglQ~W----Wlqpll~~---m~~----~~lf~ga~~LTa~tDNAalTYLgsl-v---- 370 (438)
T PF07399_consen 307 SPLILREALLVGFFLAGLVVLGGLQQW----WLQPLLSG---MSP----LALFFGATALTAFTDNAALTYLGSL-V---- 370 (438)
T ss_pred cchhhhHHHHHHHHHhhHHHcCchHHH----HHHHHHhc---CCh----hHHHHHHHHHHHHhhhHHHHHHHHh-c----
Confidence 22333322 1333344455666666 33333322 111 2344557889999999998876442 1
Q ss_pred ccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHH
Q 010427 436 GAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAI 504 (511)
Q Consensus 436 a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv 504 (511)
.+.+. ..=.+++.++-.||-+|-|+-.+|..-+.+.|+.=|++ .++-..-+--.++.|++...+
T Consensus 371 ---~g~sd-~~kYalVAGAVtGGGLTVIANAPNpaG~aiLr~~F~d~-~Is~~~L~l~AL~PT~ia~~~ 434 (438)
T PF07399_consen 371 ---PGLSD-AFKYALVAGAVTGGGLTVIANAPNPAGQAILRKHFPDG-SISPLGLFLAALPPTLIAALA 434 (438)
T ss_pred ---cCCCH-HHHHHHHhheeccCceeEeccCCChhhHHHHhccCCCC-CcChHHHHHHHHhHHHHHHHH
Confidence 23333 23457888889999999999999999999887642221 134444455556777665543
No 80
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=98.51 E-value=1.9e-05 Score=83.47 Aligned_cols=161 Identities=18% Similarity=0.263 Sum_probs=128.6
Q ss_pred cchhHHHHHHHHHHH--HHhcCCChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHH
Q 010427 32 PIGRTAGALLGAMLM--IIFKVITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLL 103 (511)
Q Consensus 32 ~i~~~~~al~~~~~l--~~~g~~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll 103 (511)
|-+..+++...+.+. ...+.++.++..+.+. -...+.+++..+.+..+..+|+-+.+++.+.....+++.++
T Consensus 237 pTEAaava~~yal~v~~~iyr~l~~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~~~~~~L 316 (425)
T PRK15060 237 PTEAGAVAAFYALFVAVVIYREMTFSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLF 316 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCHHHHH
Confidence 444443343333333 3578888888766542 34467888889999999999999999999987777788888
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc-cCCCccHHHHHH
Q 010427 104 CRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA-LQSGISFGKFLL 182 (511)
Q Consensus 104 ~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~-~~~~~~f~~f~~ 182 (511)
+.+.++..++.+|++.+++.+++.|+...++++.|+||..+-+-..+...+|....|+|. |+++. +-.+.++.|..+
T Consensus 317 l~i~~~~lvlGmfld~~a~ili~~Pil~Pi~~~~Gidpv~fgii~~~~~~ig~iTPPvG~--~lfv~~~ia~~~~~~i~~ 394 (425)
T PRK15060 317 IVIMVAIMVVGMVMDLTPTVLILTPVLMPLVKEAGIDPIYFGVMFIINCSIGLITPPVGN--VLNVISGVAKLKFDDAVR 394 (425)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCCCCccH--HHHHHHHhcCCCHHHHHH
Confidence 888899999999999999999999999999999999999999999999999888778886 55554 335799999999
Q ss_pred hHHHHHHHHHHH
Q 010427 183 GILPSMLVGVFV 194 (511)
Q Consensus 183 ~~lp~~ii~l~~ 194 (511)
..+|.....++.
T Consensus 395 ~~~Pf~~~~~~~ 406 (425)
T PRK15060 395 GVFPYVLVLYSL 406 (425)
T ss_pred HHHHHHHHHHHH
Confidence 999987655443
No 81
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=98.50 E-value=0.0031 Score=67.68 Aligned_cols=146 Identities=10% Similarity=0.044 Sum_probs=104.3
Q ss_pred CCChHHHHH----hCC--hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcc-hhhHH
Q 010427 51 VITPEEAFA----AID--LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFT-NDTCC 123 (511)
Q Consensus 51 ~~~~~~a~~----~~~--~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~fls-N~~t~ 123 (511)
..+.+|..+ ++. .+.+..+...=.+++....+|..+.+..+-.+. =+++.+....+++++++|.... .-+|+
T Consensus 49 ~~~~~~~~~~~~~g~~~~~~~i~il~~~G~~~~~~~~~g~i~~l~~~g~~~-i~p~~~~~~~Fl~~~~~s~~~Gss~gt~ 127 (454)
T TIGR00931 49 GVGYNDLESAIIDGIKIGIKAILILALVGILIGTWIMGGTVPTLIYYGLSI-ISPEWFAVSTLLICMIVSSFTGTSWGTV 127 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 356666443 332 233333333334556788899988886543322 3577777788888889886654 77888
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHHHHHHHHH
Q 010427 124 VILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLI 198 (511)
Q Consensus 124 ~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~ 198 (511)
..+.|+...++...|.+|....-++.-+|-.|--++|+++.+|+- ....+.+..|+.+..+|..+...+++.+.
T Consensus 128 ~~~g~~l~~i~~~~g~~~~~~agai~sGa~fGD~~sP~Sdtt~l~-a~~~~~~~~~~v~~~~~~~~~a~~i~~v~ 201 (454)
T TIGR00931 128 GTIGVAMMGIGTGLGIDLAIAAGAVVCGAYFGDKLSPLSDTTNFA-SGIVGVDLFDHIRHLLYTTVPSFVITAIL 201 (454)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCCCCcHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766566667788899999999988855 44556899999999988887776665443
No 82
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=98.48 E-value=5.5e-06 Score=83.55 Aligned_cols=165 Identities=19% Similarity=0.333 Sum_probs=113.0
Q ss_pred cCCCccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhc-cCchhHHHH
Q 010427 27 AVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRS-RGAKDLLCR 105 (511)
Q Consensus 27 ~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~-~~~~~ll~~ 105 (511)
+.+.+.++ ...-+|...+.+...++|.+ ..+|+++.+.+...-.+++|.+|-.|++-+.-.|.. +||+++-..
T Consensus 18 R~GGIglG--~~GGlGv~il~f~f~~~P~~----~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~iT~l 91 (436)
T COG2704 18 RLGGIGLG--VAGGLGVLILVFIFGLKPGK----PPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKYITIL 91 (436)
T ss_pred cccceeee--ecccccHHHHhhhhcCCCCC----CChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCeEEEe
Confidence 34444444 33455555554443455544 789999999999999999999999999877544433 356554433
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc--cCCCccHHHHHH
Q 010427 106 ICFISALSSALFTNDTCCV-ILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA--LQSGISFGKFLL 182 (511)
Q Consensus 106 ~~~~~~~lS~flsN~~t~~-i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~--~~~~~~f~~f~~ 182 (511)
-=+++.+++ |+..|+.++ -.+|++-+++++.|++|.+-+-.-..++.++-..+||....=-+.. ++.+.++.+-+.
T Consensus 92 AP~Vty~lT-~maGTGh~vySilPVI~eVA~~~gIrPeRPls~avVsSQ~aItASPISAAVV~~~a~l~~~g~~~l~ll~ 170 (436)
T COG2704 92 APFVTYTLT-ILAGTGHVVYSILPVIAEVAKKNGIRPERPLSAAVVSSQIAITASPISAAVVYMSAVLEPLGISYLTLLM 170 (436)
T ss_pred hhHHHHHHH-HhhcCCceeeeehhHHHHHHHHcCCCCCCcchHHHHHhhhhhhcCchHHHHHHHHHHHhhcCcchheeee
Confidence 233344443 455566554 5889999999999999998877888999999888898654322222 345566777777
Q ss_pred hHHHHHHHHHHHHHHH
Q 010427 183 GILPSMLVGVFVNTLI 198 (511)
Q Consensus 183 ~~lp~~ii~l~~~~~~ 198 (511)
..+|..+++..+..++
T Consensus 171 v~IPaTl~g~~~~~l~ 186 (436)
T COG2704 171 VTIPSTLLGVLLMALF 186 (436)
T ss_pred EEecHHHHHHHHHHHH
Confidence 7889999887765443
No 83
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=98.34 E-value=2.8e-05 Score=70.07 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=94.1
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHH-hccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccch
Q 010427 324 GMLIALLMGLNMSWTALTAALVLVV-LDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVG 402 (511)
Q Consensus 324 ~~l~~~~~~l~~~~~al~~a~~l~~-~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 402 (511)
.++++...+++.+..++..+.++-. ....+.+|.++.++|++.+.+.|.--+-+-.++.|-.|+++++.....+....-
T Consensus 14 ~i~ig~~~kiNiGllAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~~~~r~~l 93 (149)
T PF07158_consen 14 VIVIGFVRKINIGLLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRLVGGRPAL 93 (149)
T ss_pred HHHHHHccccchHHHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcee
Confidence 3445555568999998877765442 355788999999999999999999999999999999999999998766533333
Q ss_pred hHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhccccCcchhH
Q 010427 403 GISILAIIILVLSNVAS-NVPTVLLLGARVAASAGAISESEEKK 445 (511)
Q Consensus 403 ~~~~l~~~~~ilS~~is-N~a~~~l~~P~i~~~~a~~~~~~~~~ 445 (511)
-.++++.++.++|.+=. +.|+.+++.| ++...|...+.||-.
T Consensus 94 iP~v~f~~~~~lsa~G~g~~~~~Ai~aP-ia~~lA~~~gi~p~l 136 (149)
T PF07158_consen 94 IPWVMFLLAAVLSAIGAGSIAAVAIMAP-IAMSLARRTGINPLL 136 (149)
T ss_pred hHHHHHHHHHHHHHhCCChHHHHHHHHH-HHHHHHHHhCCCHHH
Confidence 34667788888888854 7788888899 667888888888754
No 84
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=98.33 E-value=0.0042 Score=66.78 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=67.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCc
Q 010427 62 DLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSP 141 (511)
Q Consensus 62 ~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p 141 (511)
+.+-+.++.-+|.=..-.||||+++..-++.+++. +++.+..+.++..++|...+..+. +++.|+...+....|.+|
T Consensus 87 ~F~pLG~vlv~mlgvgvae~sG~i~a~i~~~v~~~--p~~~it~ivvf~gv~s~~asdaGy-Vvl~PL~a~if~a~Gr~P 163 (508)
T PRK11339 87 GFAPLGAILALVLGAGLAERVGLLPALMVKMASHV--NARYASYMVLFIAFFSHISSDAAL-VIMPPMGALIFLAVGRHP 163 (508)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHcCCCh
Confidence 45667666666666677899999999999887653 344454555556677776665555 779999999999999999
Q ss_pred hHHHHHHHHHHhhccCc
Q 010427 142 HPFLLALASSANVGSSA 158 (511)
Q Consensus 142 ~~~l~~~a~aan~Gg~~ 158 (511)
.. -+..+|++..||+.
T Consensus 164 la-Gia~~fagvs~Gfs 179 (508)
T PRK11339 164 VA-GLLAAIAGVGCGFT 179 (508)
T ss_pred HH-HHHHHHHHHHhhhh
Confidence 54 57777777766543
No 85
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=98.11 E-value=0.00017 Score=76.70 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=117.5
Q ss_pred hcCCChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhH
Q 010427 49 FKVITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTC 122 (511)
Q Consensus 49 ~g~~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t 122 (511)
.+..+.++..+.+. -...+.+.+..+++..+..+|+.+.+++.+.....+++..+..+.++..++.++++.+++
T Consensus 256 ~~~~~~~~l~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~~~~~~l~l~~l~~lilG~~m~~~a~ 335 (416)
T PF06808_consen 256 YRRLSWKDLWRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSGSPWLVLLLIMLILLILGMFMDTTAA 335 (416)
T ss_pred hcccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCcchHHHHHHHHHHHHHHhccccHHHH
Confidence 57788887666542 345678888899999999999999999999877777777777888888999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc-cCCCccHHHHHHhHHHHHHHH
Q 010427 123 CVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA-LQSGISFGKFLLGILPSMLVG 191 (511)
Q Consensus 123 ~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~-~~~~~~f~~f~~~~lp~~ii~ 191 (511)
.++..|+...+..+.|+||..+-+.+.+.+.+|...-|+|- |+++. +-.+.++.+-.+..+|...+-
T Consensus 336 ~ii~~pi~~P~~~~~Gidpi~~g~~~~~~~~ig~iTPPvgl--~lfva~~ia~~~~~~i~~~~~Pf~~~~ 403 (416)
T PF06808_consen 336 IIIVAPILAPIAQALGIDPIHFGVFMFYNAEIGLITPPVGL--NLFVAAGIAGVPMEKIFRGILPFIFVL 403 (416)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHhcCCCCCccH--HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999776667875 45554 345788889998888876553
No 86
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=98.08 E-value=0.00068 Score=67.80 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHH
Q 010427 100 KDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGK 179 (511)
Q Consensus 100 ~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~ 179 (511)
+.+...+..+-.+.|++++-..+++++.-++-.+-.+++.. .++..--+|+-.+|..+||+|.|...++.+..+-+|+-
T Consensus 100 k~~vfl~vviLGL~SSiITAIIAAliLvEIv~~lpl~R~~K-v~~~ViaCFsIGlGAaLTPiGEPLSTIaVSKL~a~F~y 178 (347)
T PF07854_consen 100 KVFVFLLVVILGLSSSIITAIIAALILVEIVNALPLDRKSK-VKLVVIACFSIGLGAALTPIGEPLSTIAVSKLNADFFY 178 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccce-eEEeehhHHHHhcCccccCCCCCcHHHHHHHHcccHHH
Confidence 33444556667778899998888888775554432222222 23445556777789999999999998888766666644
Q ss_pred HHHhHHHHHHHHHHH
Q 010427 180 FLLGILPSMLVGVFV 194 (511)
Q Consensus 180 f~~~~lp~~ii~l~~ 194 (511)
......+..+.+.++
T Consensus 179 L~~~lg~yIi~~vl~ 193 (347)
T PF07854_consen 179 LFRLLGIYIIPGVLA 193 (347)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 87
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=98.02 E-value=0.035 Score=60.05 Aligned_cols=85 Identities=20% Similarity=0.085 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 010427 70 FGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALA 149 (511)
Q Consensus 70 ~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a 149 (511)
..|+- ..-.||||+++..-++.+++. +++.+..+.++..++|...+..+. +.+.|+...+....|.+|.. -+..+
T Consensus 92 v~mlG-vGvae~tG~i~a~i~~~v~~~--p~~~~t~ivv~~gv~s~~asdaG~-vvl~PL~a~if~a~Gr~Pla-Gia~~ 166 (513)
T TIGR00819 92 ALLLG-AGIAEKSGLIPALMRKLASHS--NAKLASFMVLFIAFFSHIASDAAL-VILIPLGALIFHALGRHPLA-GLAAA 166 (513)
T ss_pred HHHHH-HHHHHHhcHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHcCCChHH-HHHHH
Confidence 33333 566799999999999887653 344555555566677777665555 77999999999999999954 57788
Q ss_pred HHHhhccCcc
Q 010427 150 SSANVGSSAT 159 (511)
Q Consensus 150 ~aan~Gg~~T 159 (511)
|++-.||+..
T Consensus 167 fagvs~GFsA 176 (513)
T TIGR00819 167 FAGVGCGFSA 176 (513)
T ss_pred HHHHhhhhhc
Confidence 8877776654
No 88
>COG2056 Predicted permease [General function prediction only]
Probab=97.96 E-value=0.03 Score=56.98 Aligned_cols=149 Identities=11% Similarity=0.041 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHhCC-----h-hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccC---chh---HHHHH
Q 010427 39 ALLGAMLMIIFKVITPEEAFAAID-----L-SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRG---AKD---LLCRI 106 (511)
Q Consensus 39 al~~~~~l~~~g~~~~~~a~~~~~-----~-~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~---~~~---ll~~~ 106 (511)
-.+++..--++|-++..|..+.|. + ++-+--+-+=..+.++.|||+.|.+++++.+..++ .|. .=+.+
T Consensus 25 L~isAlvaGl~~gl~l~eti~~f~~GlgG~a~vALSYalLGafAvaIsksGltd~l~~kvi~~i~~~~~~~~~~~~K~~l 104 (444)
T COG2056 25 LIISALVAGLVGGLGLTETINAFISGLGGNANVALSYALLGAFAVAISKSGLTDVLAKKVIRLLGGDESRRGKTLKKYLL 104 (444)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccccchhhHHHHH
Confidence 444555556677888887776542 2 22222122223456789999999999988765433 111 11223
Q ss_pred HHHHHHHHhhcchhhH-----HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccc---hhhhcc----CCC
Q 010427 107 CFISALSSALFTNDTC-----CVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQ---NLVIAL----QSG 174 (511)
Q Consensus 107 ~~~~~~lS~flsN~~t-----~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~---Nliv~~----~~~ 174 (511)
+.+..++|.|-.|..= .=+++|-.+++-.++++|.+..-..+.|+-..--+..|+|-.+ +++..+ ...
T Consensus 105 ~~~i~~~a~~SQNliPVHIAFIPilIPPLL~lfn~LkiDRR~vAc~ltFGL~apYi~LPvGFG~IF~~ii~~n~~~a~~~ 184 (444)
T COG2056 105 LLIILLIACFSQNLIPVHIAFIPILIPPLLSLFNKLKIDRRLVACVLTFGLTAPYILLPVGFGLIFQSIILDNINAAGVS 184 (444)
T ss_pred HHHHHHHHHhcCCccceeeeeehhhhhHHHHHHHHhhhhHHHHHHHhhcccccceeEecchHHHHHHHHHHHHHHhcCCC
Confidence 4444566667677543 3467788889999999998877777777766656677777543 333321 234
Q ss_pred ccHHHHHHhHHHH
Q 010427 175 ISFGKFLLGILPS 187 (511)
Q Consensus 175 ~~f~~f~~~~lp~ 187 (511)
++..+-.+.+..+
T Consensus 185 ~~~~~V~~am~ip 197 (444)
T COG2056 185 LSVNQVPKAMWIP 197 (444)
T ss_pred cchhhhHHHHHHH
Confidence 6777766655433
No 89
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=97.87 E-value=0.0023 Score=71.07 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=122.8
Q ss_pred CccchhHHHHHHHHHHH-HH---hcCCChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-C
Q 010427 30 FLPIGRTAGALLGAMLM-II---FKVITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-G 98 (511)
Q Consensus 30 ~~~i~~~~~al~~~~~l-~~---~g~~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~ 98 (511)
..|-+....+...+.+. .+ .+.+++++..+.+. -...+.+++.-+++..+..+|+-+.+++.+..... +
T Consensus 348 ~TpteAa~~a~~~al~v~~~~~~~r~l~~~~l~~~l~~~a~~~~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~ 427 (613)
T TIGR02123 348 YSPIRAAFYSIALTLIVSLLSRKDTRMGLGEIFGALEDGARNAVPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGN 427 (613)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCC
Confidence 44555444444444333 12 35677877665543 34567888888999999999999999999987766 5
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc-CCCccH
Q 010427 99 AKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL-QSGISF 177 (511)
Q Consensus 99 ~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-~~~~~f 177 (511)
++.++..+.+++.++.++++.+++.+++.|+...+..+.|+||..+-+.+.+.+.+|...-|+|- |+++.. -.+.++
T Consensus 428 ~~~~Lll~~l~~lilGm~l~~~a~~ii~~pi~~P~l~~lGidpi~~~~~v~~~~~ig~iTPPvgl--~lfvaa~Ia~~~~ 505 (613)
T TIGR02123 428 LFLLLILTMIACIILGMGLPTTANYIITATLAAPALIALGVPPIAAHMFVFYFGILADITPPVAL--AAFAAAGIAGADP 505 (613)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCchH--HHHHHHhhcCCCH
Confidence 66777778888889999999999999999999999999999999998999999998766556764 455543 346788
Q ss_pred HHHHHhHHHHHHHHHHH
Q 010427 178 GKFLLGILPSMLVGVFV 194 (511)
Q Consensus 178 ~~f~~~~lp~~ii~l~~ 194 (511)
.+-.+..+|..+...++
T Consensus 506 ~~~~~~~~p~~~~~~~~ 522 (613)
T TIGR02123 506 MKTGFEAFKLALAGYLV 522 (613)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777778877665444
No 90
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=97.82 E-value=0.00086 Score=71.96 Aligned_cols=122 Identities=11% Similarity=0.045 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHH-hhcchhhHHHHHHHHHHHHHHHcCCCch
Q 010427 64 SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSS-ALFTNDTCCVILTEFVLKIARQNGVSPH 142 (511)
Q Consensus 64 ~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS-~flsN~~t~~i~~Pi~~~ia~~~~~~p~ 142 (511)
+++.++...+.++..++++|.++.+.+++.++.++++++.+...+.+.+.+ .+.||..+.++.-|+..++.+|+|++|.
T Consensus 310 ~~i~lii~~~~lggil~~~G~l~~l~~~l~~~i~s~~~~~l~t~~~~~i~~~i~~~~~~sil~~G~~~k~~~d~~~i~r~ 389 (454)
T TIGR00931 310 WSLSLVMIALTFGGVLQRIGVLDVILQSANKKIISTWTFDCSTSTSSIGVNVVTCEQYLSILLPGKTFESFYTKLNLAKK 389 (454)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHcCCCcceehHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHcCCCHH
Confidence 366677777888899999999999999998888887777666666666665 4577888889999999999999999999
Q ss_pred HHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHH
Q 010427 143 PFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILP 186 (511)
Q Consensus 143 ~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp 186 (511)
++-..+.-++...+.+-|.+ ..-.+..+..+.+..+|.++.+-
T Consensus 390 ~LA~~ld~s~t~~~~LiPws-~~g~~~~~~lgv~~~~~iPy~fy 432 (454)
T TIGR00931 390 NLSRTLEDAGTLVNPLIPWG-VSGAYMAGTLGVDTISYLPFAFL 432 (454)
T ss_pred HHHHHHHhhhhhhhhHHHHH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 98877777777667777773 33344445556777777765543
No 91
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=97.80 E-value=0.09 Score=57.48 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=86.8
Q ss_pred HHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh--chHHHHHHHHHHHHH
Q 010427 356 PCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA--SNVPTVLLLGARVAA 433 (511)
Q Consensus 356 ~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i--sN~a~~~l~~P~i~~ 433 (511)
+..++. |+..+.....+.++.-+.++|..+.+++.+.. .+ ... ..+.-+..++..|+ ||+..-+++.+ ++.
T Consensus 380 ~t~~~~-~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G--~~y--p~~aP~lG~lG~FiTGS~T~SN~lF~~-lQ~ 452 (522)
T PF02652_consen 380 KTLKQL-WPPAIAIIFFLALAYVMNYSGMTATLALALAA-TG--AAY--PFFAPFLGWLGSFITGSNTSSNALFGP-LQV 452 (522)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hC--ccH--HHHHHHHHHHhcccccchHHHHHHHHH-HHH
Confidence 334444 78888889999999999999999999998865 32 111 22344556777777 69999999999 778
Q ss_pred hhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHH
Q 010427 434 SAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIG 505 (511)
Q Consensus 434 ~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~ 505 (511)
..|+..|.|+. ++..+ =++||..--+-|+.|+......-. ..|. + .+-+|..+|.+++..++.
T Consensus 453 ~~A~~lgl~~~--l~~Aa--q~~Gg~~g~mIsp~~i~~a~a~~g-~~g~-E---g~ilr~t~~~~l~~~~i~ 515 (522)
T PF02652_consen 453 TTAQQLGLPPL--LIAAA--QNVGGAMGNMISPQNIVAAAAAVG-LSGK-E---GEILRKTLPPSLIYALIV 515 (522)
T ss_pred HHHHHcCCCHH--HHHHH--HHHHHHHHhccCHHHHHHHHHHhc-CCCc-H---HHHHHHHHHHHHHHHHHH
Confidence 88888888763 33322 233333222235667665532211 1222 2 677888888888776644
No 92
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=97.78 E-value=0.092 Score=57.01 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=76.1
Q ss_pred HHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhc
Q 010427 77 FYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSA-LFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVG 155 (511)
Q Consensus 77 ~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~-flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~G 155 (511)
+.-.++|..+....+..+. =++..++....+.|++.|. -=+...++...-|....+++..+.++-...-...-+|..|
T Consensus 97 ~~w~~~g~v~~~~~~gL~~-i~~~~~~~~~f~~t~ivs~~~gts~gt~~t~~~~l~~I~~~~gap~~l~agai~~GAyfg 175 (485)
T COG1757 97 AAWAASGIVPALVYYGLKL-ISPSIFFFDDFFITAIVSTATGTSWGTAATSGPALAGIGDSTGAPLALTAGAILSGAYFG 175 (485)
T ss_pred HHHHHcCChhHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3344555555555443322 1334444444555555542 2345567788999999999999998754444567899999
Q ss_pred cCcccccccchhhhccCCCccHHHHHHhHHHHHHHHHHHH
Q 010427 156 SSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVN 195 (511)
Q Consensus 156 g~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~ 195 (511)
..+.|+.+.+|+- ....+..+.|-.+.++...+...++.
T Consensus 176 d~ispisdTt~~a-a~~~~~~~~~~i~~~~y~~~~~~iv~ 214 (485)
T COG1757 176 DKISPLSDTTILA-AGTQGVDLVDHIKSNFYTTIPAFILA 214 (485)
T ss_pred hhhhHhHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998874 33445678888887776665555543
No 93
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=97.75 E-value=0.0044 Score=65.61 Aligned_cols=191 Identities=13% Similarity=0.157 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHHHHHHH--hhcC---CCccchhHHHHHHHHHHHHHh---cCCChHHH-------HHhCC---hhHHHH
Q 010427 7 ENVVLGSFAFVIFWILAV--FPAV---PFLPIGRTAGALLGAMLMIIF---KVITPEEA-------FAAID---LSVLGL 68 (511)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~--~~~~---~~~~i~~~~~al~~~~~l~~~---g~~~~~~a-------~~~~~---~~~i~~ 68 (511)
...+++++-+.=....+. |.+. ..+.++...+.+++..+-.+. +.-+.++. +++.+ -+++-+
T Consensus 240 ~p~~YAlLP~lPliLil~~~f~~~~~~~~i~l~v~~am~is~~ia~l~e~ir~r~~k~~~~~~~~ff~GMG~~f~~VV~L 319 (455)
T PRK09804 240 PPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTL 319 (455)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcccccCceeecHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666655542222233 2221 124556555556555444333 33333443 33333 246778
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHcCCCchHHHHH
Q 010427 69 LFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALF-TNDTCCVILTEFVLKIARQNGVSPHPFLLA 147 (511)
Q Consensus 69 l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~fl-sN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~ 147 (511)
+.+.=+.+++|+..|+.|.+-+.......+.-.+.+.+..++++.+... |.++...-+.|++-++|.+.|++|..+.+|
T Consensus 320 IVAA~vFa~GL~aiG~Id~Li~~~~~~g~g~~~~~lv~~~i~~l~a~l~GSGnAaffAF~~lvp~iA~~~G~~~~~l~lp 399 (455)
T PRK09804 320 VVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMP 399 (455)
T ss_pred HHhHHHHHhHHHHhhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHhHHHHHHcCCCHHHHHHH
Confidence 8888899999999999999998876554444444444444454444333 466667789999999999999999999999
Q ss_pred HHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHHHHHHHHH
Q 010427 148 LASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVNTLI 198 (511)
Q Consensus 148 ~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~~~~ 198 (511)
..+++|+|=..+|+ ++.=+.+.+..+.|-.|-.|--.++.++++++..+.
T Consensus 400 mq~as~lgRt~SPV-agviIavAg~a~vSP~eiVKRTavPml~g~i~~~i~ 449 (455)
T PRK09804 400 MHFATTLARAVSPI-TAVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIA 449 (455)
T ss_pred HHHHHhhccccCch-hhHHhhhccccCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999 344455556788999999998877778887775543
No 94
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=97.71 E-value=0.0025 Score=64.66 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHcCCCch
Q 010427 64 SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSA-LFTNDTCCVILTEFVLKIARQNGVSPH 142 (511)
Q Consensus 64 ~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~-flsN~~t~~i~~Pi~~~ia~~~~~~p~ 142 (511)
++++++.....+++.++++|..+.+.+++.+..++++.+.....+++.+++. --||..+.+++.|+...++++.|.+|.
T Consensus 162 ~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~~~~~l~~~~~l~~~~~~~~tgs~~~ti~i~~pi~~~l~~~~g~~~~ 241 (303)
T PF03553_consen 162 PTIIILILAGALGGILEKTGVLDALVNKLLKKIKSPRSLPAVTFLLSIIISFATGSSWGTIAIMGPIFKPLAEKMGISPP 241 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccHH
Confidence 4666777778899999999999999988887777777777777777777764 347778889999999999999999998
Q ss_pred HHHHHHHHHHhhccCcccccccchhh
Q 010427 143 PFLLALASSANVGSSATPIGNPQNLV 168 (511)
Q Consensus 143 ~~l~~~a~aan~Gg~~TpiG~p~Nli 168 (511)
...-.+.-++..|..+-|+++.+-+.
T Consensus 242 ~~a~ai~~~~~~g~~l~P~s~~~i~~ 267 (303)
T PF03553_consen 242 LLAGAIESGATFGDPLSPWSDTTILS 267 (303)
T ss_pred HHHHHHHhhhhhcCCCCcchHHHHHH
Confidence 88788888899999999998865443
No 95
>COG1906 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.073 Score=53.45 Aligned_cols=147 Identities=14% Similarity=0.188 Sum_probs=78.8
Q ss_pred HHHHHHHHHHh--cCCC-hHHHH-HhCChh---HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHH
Q 010427 39 ALLGAMLMIIF--KVIT-PEEAF-AAIDLS---VLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISA 111 (511)
Q Consensus 39 al~~~~~l~~~--g~~~-~~~a~-~~~~~~---~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~ 111 (511)
-+.|+..+.++ |.-. ....+ +..+|+ .+..++-.|.++.-+++.|-.++..+.+..... +.-.+.+=.+..
T Consensus 28 if~Gal~lall~Lg~~g~l~~~~~s~~s~st~~lIviv~fim~l~~~me~~G~l~k~~~gll~lfp--k~s~~~iPalIG 105 (388)
T COG1906 28 IFLGALTLALLSLGIRGILLSLYLSVSSWSTWRLIVIVIFIMGLGYVMEQIGYLEKVEEGLLHLFP--KHSLWTIPALIG 105 (388)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHhcc--hhHHHHHHHHHc
Confidence 45666555443 4333 22222 335554 467777789999999999999999987653322 222222222222
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHH
Q 010427 112 LSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVG 191 (511)
Q Consensus 112 ~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~ 191 (511)
.+ ---+=+.+-.|++-..+++.|++|.+--.--=+-=.+--..-|+ .|.=++...-.|++.+++...++|..++.
T Consensus 106 Lm----PMPgGAliSApmi~p~~~k~~l~pe~kt~iNYwfRHiwe~~WPl-yqaVvi~sav~gvs~~~vs~~~fP~~iia 180 (388)
T COG1906 106 LM----PMPGGALISAPMIEPLAKKFGLNPEKKTFINYWFRHIWELFWPL-YQAVVITSAVLGVSIREVSVKMFPLTIIA 180 (388)
T ss_pred Cc----CCCCcceEeeeeccccchhccCCHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHhcCcHHHHHHHHhHHHHHH
Confidence 21 11122233346666778888888874211111111111122333 33323333445789999999999987765
Q ss_pred H
Q 010427 192 V 192 (511)
Q Consensus 192 l 192 (511)
+
T Consensus 181 ~ 181 (388)
T COG1906 181 L 181 (388)
T ss_pred H
Confidence 3
No 96
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=97.48 E-value=0.065 Score=54.88 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHHhhcchhh-H----HHHHHHHHHHHHH
Q 010427 64 SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWR---SRGAKDLLCRICFISALSSALFTNDT-C----CVILTEFVLKIAR 135 (511)
Q Consensus 64 ~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~---~~~~~~ll~~~~~~~~~lS~flsN~~-t----~~i~~Pi~~~ia~ 135 (511)
+....+...+-..+.++++|.-+.+.+...+- -++|+.++..-.+++.++|.+++.-+ . .+.+.|+. .
T Consensus 74 gLgm~Im~~~GfA~yM~~iga~~~~V~l~skPL~~ikspy~ll~~ay~i~~~m~~ai~SAtGlg~llmaTLfPvl----v 149 (451)
T COG3069 74 GLGMMIMALCGFARYMTHIGANDAVVKLASKPLKYIKSPYLLLIAAYFVACLMSLAIPSATGLGVLLMATLFPVL----V 149 (451)
T ss_pred cHHHHHHHhhcHHHHHHHhChhHHHHHHHhchhhhhcccHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHH----H
Confidence 34556677777788999999999998877643 35677777778888899997776543 2 23344554 4
Q ss_pred HcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhh
Q 010427 136 QNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLL-GILPSMLVGVFVNTLILLCMYWRIL 207 (511)
Q Consensus 136 ~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~-~~lp~~ii~l~~~~~~~~~~~~~~L 207 (511)
..|++... -.-..|+..+..+.|- +.-..+..+..|++..||.. +-+|..+.+.+. .....++..|++
T Consensus 150 ~~Gvsr~a--aaAi~Ast~~i~lsp~-s~~sv~aAe~sgm~i~~~~~~~~lpv~i~~iI~-~ai~hff~qr~~ 218 (451)
T COG3069 150 NLGVSRGA--AAAICASTAAIILSPT-SGDSVLAAQVSGMKIADFAFHYQLPVSIAAIIG-MAIAHFFWQRYL 218 (451)
T ss_pred Hhcccchh--hHHHhhchHHheeCCC-CcchHHHHHhcCCceEeeeeccCcHHHHHHHHH-HHHHHHHHHHHh
Confidence 45665221 2222344444455552 32234445667888877765 446666655444 333343333444
No 97
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=97.39 E-value=0.0037 Score=64.02 Aligned_cols=170 Identities=15% Similarity=0.157 Sum_probs=111.3
Q ss_pred HHHHHh-CCcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhH
Q 010427 326 LIALLM-GLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGI 404 (511)
Q Consensus 326 l~~~~~-~l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~ 404 (511)
.++.-. |+.++...-+|..++.+.-..++. +.+|++++.+++....+.++|.+|..|++.+.-++...-++.. .
T Consensus 10 ~~GaR~GGiglG~~gg~G~~il~~~fgl~Pg----~~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~-I 84 (364)
T PF03605_consen 10 FLGARLGGIGLGLAGGLGVAILVFGFGLKPG----SPPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKY-I 84 (364)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCc-E
Confidence 344434 377888887777777663223443 5899999999999999999999999999877666554423322 1
Q ss_pred HHHH-HHHHHHHHhhc--hHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCC
Q 010427 405 SILA-IIILVLSNVAS--NVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPS 481 (511)
Q Consensus 405 ~~l~-~~~~ilS~~is--N~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~g 481 (511)
.++. +++-++|-+.. |++. .+.|++ ..+|...+.-|.+|.-..+..+-.+=..+|++..+--+. +..+ |
T Consensus 85 t~lAP~vt~~~T~~~GTgh~a~--s~lPVI-~eVA~~~~IRPeRPls~svvASq~aItaSPiSAA~~~~~-~~l~---~- 156 (364)
T PF03605_consen 85 TFLAPLVTYLFTFLAGTGHVAY--SLLPVI-AEVAKENGIRPERPLSISVVASQIAITASPISAATVAMI-AILA---P- 156 (364)
T ss_pred EEehhHHHHHHHHHhcccHHHH--HhhHHH-HHHHHHcCCCCCCchHHHHHHHhcchhcCcHHHHHHHHH-HHHc---c-
Confidence 1122 22333343333 4444 446966 567777788887775555555556667788876543332 3332 3
Q ss_pred CceeecchhhhhhhHHHHHHHHHHHHH
Q 010427 482 GYTLSFWTHLKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 482 gy~i~f~df~k~G~plt~l~~iv~~~~ 508 (511)
.+.+++.|.+.+-+|-|++..+++.++
T Consensus 157 ~~gv~~~~iL~V~iPat~ig~~~~a~~ 183 (364)
T PF03605_consen 157 AHGVSLLQILAVTIPATLIGVLVAAFV 183 (364)
T ss_pred ccCCCHHHHHHhhHHHHHHHHHHHHHH
Confidence 144579999999999999998876554
No 98
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=97.18 E-value=0.027 Score=60.40 Aligned_cols=168 Identities=13% Similarity=-0.027 Sum_probs=100.3
Q ss_pred HHhCCcHHHHHHHHHHHHHHhccCChH-------HHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccc
Q 010427 329 LLMGLNMSWTALTAALVLVVLDFKDAM-------PCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRV 401 (511)
Q Consensus 329 ~~~~l~~~~~al~~a~~l~~~~~~~~~-------~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 401 (511)
...++++.+..+++++...+....+.. +.+.+.=|+..+.++....++.-+++||.++.+++.+.+..+..
T Consensus 18 ~~~k~~~~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g~~-- 95 (440)
T TIGR00791 18 MKFKLNTFVALLVVSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFGKS-- 95 (440)
T ss_pred HHHcccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhccc--
Confidence 346788888888888776665444433 23333448999999999999999999999999999997654321
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCC
Q 010427 402 GGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPS 481 (511)
Q Consensus 402 ~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~g 481 (511)
...+.+...+.+++....=....+++.|++ ..++...+.++...-.....+....-..-|-...++ .+.+..
T Consensus 96 r~~~a~~~~~~ilgi~~f~~~~~vil~Pi~-~~l~~~~g~s~~~~a~~~~~~~~~~~~~vPp~Pg~~-~~a~~~------ 167 (440)
T TIGR00791 96 RVQWAVVIAGLIVGLALFFEVGFVLLIPLV-FSIAAEAKISLLKLGIPMVAALSVAHGFLPPHPGPT-AIANEY------ 167 (440)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHhCCChHHHHHHHHHHHHHhceeCCCCccHH-HHHHHh------
Confidence 222333333344433321111356788944 556655666654322333333344433445444443 333321
Q ss_pred CceeecchhhhhhhHHHHHH-HHHHHHH
Q 010427 482 GYTLSFWTHLKFGLPSTIVI-TAIGLAL 508 (511)
Q Consensus 482 gy~i~f~df~k~G~plt~l~-~iv~~~~ 508 (511)
| .+..+|+.+|++.++.. ++++.++
T Consensus 168 g--~~~~~~~~~gl~~~i~~~i~~g~~~ 193 (440)
T TIGR00791 168 G--ADIGEVLLYGLIVAIPTVIIAGPLF 193 (440)
T ss_pred C--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24688999999999886 4445444
No 99
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=97.18 E-value=0.013 Score=63.55 Aligned_cols=124 Identities=18% Similarity=0.138 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHH-hhcchhhHHHHHHHHHHHHHHHcCCCchH
Q 010427 65 VLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSS-ALFTNDTCCVILTEFVLKIARQNGVSPHP 143 (511)
Q Consensus 65 ~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS-~flsN~~t~~i~~Pi~~~ia~~~~~~p~~ 143 (511)
++..++....++..+++.|.++++.+.+.+..++.+++...+.+.+.+.. +--+|..+..++.|+..+++++.++++..
T Consensus 325 ~i~ilila~siggi~~~~G~~~~l~~~~~~~i~s~~~l~~~~~l~~~~~~~~tg~~~~si~i~gpia~~i~~~~~~~~~~ 404 (485)
T COG1757 325 AILILILAWSIGGILEDLGTLEYLLSLLQKFIKSKGSLPLIIFLLAILVAFATGTSWGSIIIMGPIAKEIADKLGLHSKR 404 (485)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcceeeeeeeHHHHHHHHHHhCccHHH
Confidence 66677777889999999999999999998777777666666666666655 44567788899999999999999999877
Q ss_pred HHHHHHHHHhhccCcccccccchhhhccCC-CccHHHHHHhHHHHH
Q 010427 144 FLLALASSANVGSSATPIGNPQNLVIALQS-GISFGKFLLGILPSM 188 (511)
Q Consensus 144 ~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~-~~~f~~f~~~~lp~~ 188 (511)
+.=.+--++.++.-+.|+++..=......+ +.+..++.++.+...
T Consensus 405 l~~~l~~gg~~~~~~~Pws~~~i~~s~~~~~~v~~~t~lPya~~~~ 450 (485)
T COG1757 405 LSRALEAGGTFGDHLSPWSDTTILSSTGLGCIVHVTTQLPYAFYAA 450 (485)
T ss_pred HHHHHHhcCeecCCCCCcchhHHHHHhccCCCchhHhhHHHHHHHH
Confidence 555566777888889999775433322222 478888887776654
No 100
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=97.13 E-value=0.015 Score=62.84 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=98.0
Q ss_pred HHHHHHhc---CCChHHHHHhCC----h-----hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHH-HHHHH
Q 010427 43 AMLMIIFK---VITPEEAFAAID----L-----SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLL-CRICF 108 (511)
Q Consensus 43 ~~~l~~~g---~~~~~~a~~~~~----~-----~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll-~~~~~ 108 (511)
.++.-+.+ ..+++|..+.|- . .++.+..|..++.+.. +..+.+.+.+....+ .+..+. ..+.+
T Consensus 293 ~ii~~~i~~~~~~~~~~~~~~F~~G~~~~~~~a~vVgla~ai~v~~~~~---~i~~tI~~~~~~~l~~~~~~~~~~~m~~ 369 (465)
T PF03606_consen 293 GIIIGLIRHRSGKSPNEIVKAFFKGMGDMLSFALVVGLARAISVFMEGG---KIIDTIVHLLSNLLSGLPGVIAAIGMFL 369 (465)
T ss_pred HHHHHHHHhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33344455 677777666652 2 2233444444444444 444445444433322 233333 33444
Q ss_pred HHHHHHhhc-chhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHH
Q 010427 109 ISALSSALF-TNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPS 187 (511)
Q Consensus 109 ~~~~lS~fl-sN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~ 187 (511)
...+++-++ |.++.+..+.|+.-.+++..|+++....++..++++++-+.+|... .=+...+-.++++.+|.|...|+
T Consensus 370 ~~~~~~fli~SGsg~a~~~mpim~plad~~Gi~~q~~vla~q~g~gl~n~isPtsg-~~m~~l~ia~V~~~~w~K~~~~~ 448 (465)
T PF03606_consen 370 IQFLINFLIGSGSGQAAAFMPIMPPLADLLGITRQTAVLAFQFGDGLGNSISPTSG-VLMAVLGIAKVSYGKWVKRTWPP 448 (465)
T ss_pred HHHHHeeecCCchHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhccchHH-HHHHHhhhcCCCHHHHHHHHHHH
Confidence 445555333 5677788999999999999999999999999999999999888632 22233456789999999999999
Q ss_pred HHHHHHHHHHH
Q 010427 188 MLVGVFVNTLI 198 (511)
Q Consensus 188 ~ii~l~~~~~~ 198 (511)
.++.+++..++
T Consensus 449 ~~~~~v~~~v~ 459 (465)
T PF03606_consen 449 MLIWFVLSIVF 459 (465)
T ss_pred HHHHHHHHHHH
Confidence 88877765544
No 101
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=96.88 E-value=0.89 Score=49.09 Aligned_cols=98 Identities=21% Similarity=0.241 Sum_probs=68.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCc
Q 010427 62 DLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSP 141 (511)
Q Consensus 62 ~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p 141 (511)
+.+-+.++.-+|.=..--||||+++.+-++..++ .+++++.....+.+++|...++.+ -+++.|+.--+-+..|..|
T Consensus 77 ~F~PLG~Vlv~mlgvgvAE~sGll~a~~r~~~~~--~p~~~vt~~v~f~Gi~sniasDAg-~Vvl~PL~a~iF~~~GRhP 153 (502)
T PF03806_consen 77 GFPPLGLVLVMMLGVGVAEKSGLLSALMRKLVLK--APPRLVTPAVVFVGIMSNIASDAG-YVVLPPLAAMIFAAVGRHP 153 (502)
T ss_pred cCCcHHHHHHHHHHHHHHHHhchHHHHHHHHhcc--CCcchhhHHHHHHHHHhcccccce-eEeHHhhHHHHHHHcCCCh
Confidence 3455655555555555669999999998887533 456666666677778877766544 4566789888888999998
Q ss_pred hHHHHHHHHHHhhccCcccccccchhhh
Q 010427 142 HPFLLALASSANVGSSATPIGNPQNLVI 169 (511)
Q Consensus 142 ~~~l~~~a~aan~Gg~~TpiG~p~Nliv 169 (511)
. .-+..+|++-.||+ .+|+++
T Consensus 154 l-aGi~~afa~vs~Gf------sAnl~i 174 (502)
T PF03806_consen 154 L-AGIAAAFAGVSGGF------SANLLI 174 (502)
T ss_pred H-HHHHHHHHHHhccc------cceeec
Confidence 4 46888888887654 456555
No 102
>PRK11588 hypothetical protein; Provisional
Probab=96.85 E-value=0.13 Score=55.68 Aligned_cols=147 Identities=11% Similarity=0.080 Sum_probs=95.2
Q ss_pred cCCChHHHHHhCChhHHHHHHHH------HHHHHHH-----HHhcHHHHHHHHHHHhccC-c-hhHHHHHHHHHHHHHhh
Q 010427 50 KVITPEEAFAAIDLSVLGLLFGT------MVVSFYL-----ERAGMFKYLEIVLSWRSRG-A-KDLLCRICFISALSSAL 116 (511)
Q Consensus 50 g~~~~~~a~~~~~~~~i~~l~g~------~~i~~~l-----~~tG~~~~ia~~l~~~~~~-~-~~ll~~~~~~~~~lS~f 116 (511)
|..+++|..+.+-...=-++.+. =.+...+ ++....|-+-+......++ + ......+.++..++.-|
T Consensus 335 ~g~~~~~i~~~f~~Ga~~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~~lp~~~~ai~m~i~~~~lNff 414 (506)
T PRK11588 335 NGMTVNTMASSFTEGARMMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAISGLPDAVSAWFMLLFQSVFNFF 414 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHeE
Confidence 44588888877643221111111 2233345 3444677777665544333 3 34555667777888876
Q ss_pred cc-hhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHHHHHH
Q 010427 117 FT-NDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFVN 195 (511)
Q Consensus 117 ls-N~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~~ 195 (511)
+. ..+-+++.+|+...+++-.|++|....++--++-.+.-..||.. +.-+....-.+++|.+|+|...|+.++-+++.
T Consensus 415 IpSgSGqAaitmPIm~Plad~lGisrq~avlAfq~GDg~tNlI~Pts-~~lm~~Laia~Ipy~kW~Kf~~pl~~i~~v~~ 493 (506)
T PRK11588 415 VTSGSGQAALTMPLMAPLADLVGVNRQVAVLAFQLGDGFTNIIYPTS-ASLMATLGVCRVDFGNWLKFIWRFLLLLFIMS 493 (506)
T ss_pred ecChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHhhhhH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 65 55667899999999999999999988888888877766666541 11122235678999999999999877665554
Q ss_pred HH
Q 010427 196 TL 197 (511)
Q Consensus 196 ~~ 197 (511)
.+
T Consensus 494 ~v 495 (506)
T PRK11588 494 SV 495 (506)
T ss_pred HH
Confidence 43
No 103
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=96.79 E-value=0.04 Score=56.39 Aligned_cols=129 Identities=18% Similarity=0.264 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHcCCCc
Q 010427 64 SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFT--NDTCCVILTEFVLKIARQNGVSP 141 (511)
Q Consensus 64 ~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~fls--N~~t~~i~~Pi~~~ia~~~~~~p 141 (511)
+++.++.+..+.+.+|..+|..|.+-+.....+.+...+.+.+.+.+ ++++..+ .++-..-+.-.+-.+|.++|++|
T Consensus 311 nVV~liVAa~vFA~GL~tiGaIdalI~~a~~~g~g~~~vmli~~l~~-~L~aIvtGSGnApf~AF~~lip~~Aa~lgi~~ 389 (451)
T COG3069 311 NVVMLIVAAGVFAQGLKTIGAIDALISGATSFGSGGIGLMLILVLLT-FLAAIVTGSGNAPFIAFVELIPKLAAGLGINP 389 (451)
T ss_pred hhHHHHHhhHHHHHHhhHhhHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHHHHHhCCCCchhhhHHhhcchhhhhcCCCh
Confidence 56777788889999999999999988776544444444444433333 3333333 34444556666678899999999
Q ss_pred hHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHHHHH
Q 010427 142 HPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFV 194 (511)
Q Consensus 142 ~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~ 194 (511)
..+.+|..+++++|-.+.|+..-. ..+.+-.+.+-+|-.|---|+.+++++.
T Consensus 390 v~l~mpm~~As~igRt~SPisgVv-vavaG~a~vSPfe~vKRts~pm~~~lv~ 441 (451)
T COG3069 390 VYLIMPMLQASALGRTLSPVSGVV-VAVAGMAKVSPFEVVKRTSVPMLVGLVT 441 (451)
T ss_pred HHHhhhHHHHHhhcccccccccee-eeeccccccChhheeeccCcchhhHHHH
Confidence 999999999999999999985432 2333455688888888766666666554
No 104
>PRK09695 glycolate transporter; Provisional
Probab=96.59 E-value=1.6 Score=48.13 Aligned_cols=132 Identities=13% Similarity=0.136 Sum_probs=80.9
Q ss_pred HHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh--chHHHHHHHHHHHHH
Q 010427 356 PCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA--SNVPTVLLLGARVAA 433 (511)
Q Consensus 356 ~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i--sN~a~~~l~~P~i~~ 433 (511)
|..++. |...+.....+.++.-+.++|-.+.+++.+.. . +.. ..+++-+..++..|+ ||+..-+++.+ ++.
T Consensus 408 ~t~k~~-~~~~lti~~~vala~vm~~SGm~~~La~~~a~-~--G~~--yp~~aP~iG~lG~FvTGS~TsSN~LF~~-lQ~ 480 (560)
T PRK09695 408 ETLISL-KWPILSIGMVLAFAFVTNYSGMSTTLALVLAG-T--GVM--FPFFSPFLGWLGVFLTGSDTSSNALFGS-LQS 480 (560)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-h--Ccc--HHHHHHHHhhhhcccccccHHHHHHHHH-HHH
Confidence 333433 45577788889999999999999999998852 2 221 223445667788888 79999999999 788
Q ss_pred hhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHH
Q 010427 434 SAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITA 503 (511)
Q Consensus 434 ~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~i 503 (511)
..|++.|.++. |+..+- ++||..--+-|+.|+.+....-.. . |.+ .|-+|.-++.+++..+
T Consensus 481 ~tA~~lGl~~~--li~Aaq--~~Gg~~GkmIspq~I~~a~a~vgl-~-G~E---g~ilr~t~~~~l~~~~ 541 (560)
T PRK09695 481 TTAQQINVSDT--LLVAAN--TSGGVTGKMISPQSIAVACAATGM-V-GRE---SELFRYTVKHSLIFAS 541 (560)
T ss_pred HHHHHcCCCHH--HHHHHH--HHhhHHhhccCHHHHHHHHHHHcc-C-Cch---hHHHHHHHHHHHHHHH
Confidence 88888887653 333322 233332222356666554322111 1 222 4555666655555444
No 105
>COG2056 Predicted permease [General function prediction only]
Probab=96.58 E-value=0.11 Score=53.08 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHhCCh--hHHHHHHHHHHHHHH----HHHhcHHHHHHHHHHHhccCchhHHHHHHHHHH-
Q 010427 39 ALLGAMLMIIFKVITPEEAFAAIDL--SVLGLLFGTMVVSFY----LERAGMFKYLEIVLSWRSRGAKDLLCRICFISA- 111 (511)
Q Consensus 39 al~~~~~l~~~g~~~~~~a~~~~~~--~~i~~l~g~~~i~~~----l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~- 111 (511)
++.|..++.+.|+++++|.-+-++- .-.-+++-.|..+++ +++||-.+.+.+......++.+.+-..++++..
T Consensus 268 al~gliv~~~~gv~~~ke~d~~~~~G~kmMa~IgFVMl~AaGfa~Vi~~TG~V~~LV~s~~~~~g~sK~l~a~lMlvvGL 347 (444)
T COG2056 268 ALAGLIVFFLSGVIKWKETDDVFTEGVKMMAFIGFVMLVAAGFAEVINATGAVEELVESSSSIIGQSKLLAALLMLVVGL 347 (444)
T ss_pred HHHHHHHHHHhcceehhhhHHHHHhhHHHHHHHHHHHHHHhHHHHHHHhccCHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7889999999999999997776653 344555555665554 799999999998776443333332222233222
Q ss_pred -----HHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccch-----hhhccCC-Cc---cH
Q 010427 112 -----LSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQN-----LVIALQS-GI---SF 177 (511)
Q Consensus 112 -----~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~N-----liv~~~~-~~---~f 177 (511)
+-|+|-+=-..+.++.| +|.+.|.+|.....-+..|+-+|=..+|-.+++= +=.-+++ ++ =.
T Consensus 348 lITMGIGsSF~TIPIIA~iyVP----Lc~~lGFSp~ati~liG~AaALGDAGSPASDSTLGPTsGLNaDGQHdHIwDTcV 423 (444)
T COG2056 348 LITMGIGSSFGTIPIIAAIYVP----LCLKLGFSPLATIALIGTAAALGDAGSPASDSTLGPTSGLNADGQHDHIWDTCV 423 (444)
T ss_pred HHhccccccccchHHHHHHHHh----HHHHhCCCHHHHHHHHHHHHHhcCCCCCcccCCCCCccCCCCCCCccchhhccc
Confidence 23666655555555555 6778899999888888899999988777665541 1111111 11 12
Q ss_pred HHHHHhHHHHHHHHHHH
Q 010427 178 GKFLLGILPSMLVGVFV 194 (511)
Q Consensus 178 ~~f~~~~lp~~ii~l~~ 194 (511)
-+|..+-+|+.+.|++.
T Consensus 424 PTFihYNiPLlifG~Ia 440 (444)
T COG2056 424 PTFIHYNIPLLIFGWIA 440 (444)
T ss_pred cceeecCchHHHHHHHH
Confidence 34555667887777665
No 106
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=96.54 E-value=0.082 Score=54.29 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=100.1
Q ss_pred CCCccchhHHHHHHHHHHHHHhcCCChHHHHHhCC----h--hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCc--
Q 010427 28 VPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAID----L--SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGA-- 99 (511)
Q Consensus 28 ~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~----~--~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~-- 99 (511)
.+.+|.. ..-++|..+.+..+--+.||--+.++ + ....++++.=+....++.||..|.+++.+.+.-.+.
T Consensus 249 ~gi~p~~--~lFmig~~iAL~vNYP~vk~Q~~ri~aha~nal~vvs~i~AAGif~Gil~gtgMvdama~si~~vIP~~lg 326 (433)
T COG2851 249 SGIFPPG--VLFMIGFAIALPVNYPNVKEQMERIGAHAGNALMVVSLIFAAGIFLGILSGTGMVDAMAKSIVSVIPDALG 326 (433)
T ss_pred hcccchh--HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcchhHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhCcHhhc
Confidence 3555664 44566666666666666776555442 1 233444444555677999999999999887654321
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCccccc--ccchhhhccCCCccH
Q 010427 100 KDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIG--NPQNLVIALQSGISF 177 (511)
Q Consensus 100 ~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG--~p~Nliv~~~~~~~f 177 (511)
..+=..+.+++.-++-|+|||+-=.=+.|++-+.+.+.|++|.. .+.++.+|.-.|.+. .|...+..+-.+.++
T Consensus 327 pyl~~ivgl~svP~tf~~snDAyYfGvlPIv~e~as~yGv~pv~----~A~AsiiGq~vh~lSPlvPat~LlvgLa~v~~ 402 (433)
T COG2851 327 PYLPLIVGLLSVPFTFFMSNDAYYFGVLPIVAEAASAYGVEPVE----IARASIIGQPVHFLSPLVPATYLLVGLAKVDM 402 (433)
T ss_pred chHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHcCCCHHH----HHHHHHhCCcceeeccchHHHHHHHHhhcCCh
Confidence 12223345566667889999999999999999999999999855 456666655444442 333334445567888
Q ss_pred HHHHHhHH
Q 010427 178 GKFLLGIL 185 (511)
Q Consensus 178 ~~f~~~~l 185 (511)
.|+.|..+
T Consensus 403 gdh~k~a~ 410 (433)
T COG2851 403 GDHQKFAL 410 (433)
T ss_pred hHHHHHHH
Confidence 88887654
No 107
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=96.52 E-value=1.8 Score=47.65 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHhhccccC
Q 010427 363 YSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA--SNVPTVLLLGARVAASAGAISE 440 (511)
Q Consensus 363 w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i--sN~a~~~l~~P~i~~~~a~~~~ 440 (511)
|...+.....+.++.-+.++|-.+.+++.+.. .+ . ...+++-+..++..|+ ||+..-+++.+ ++...|++.|
T Consensus 392 ~~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G--~--~yp~~aP~iG~lG~FiTGS~TsSN~LFg~-lQ~~tA~~lG 465 (530)
T TIGR00795 392 RLPILTIGMVLAFANVSNYSGMSKTLALALAH-TG--L--AFTFFSPFLGWLGVFLTGSDTSSNLLFGS-LQLLTAEQIG 465 (530)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hC--C--chHHHHHHHHhhhcccccchHHHHHHHHH-HHHHHHHHcC
Confidence 44566667778899999999999999998875 32 1 1223445667777888 79999999999 7888888888
Q ss_pred cchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHH
Q 010427 441 SEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIG 505 (511)
Q Consensus 441 ~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~ 505 (511)
.|+. |+..+. +.||..--+-|+.|+......-.. .|.+ .|-+|.-+|.+++..++.
T Consensus 466 l~~~--li~A~q--~~Gg~~G~mIsp~~I~~a~a~vg~--~G~E---g~ilr~t~~~~l~~~i~~ 521 (530)
T TIGR00795 466 LPET--LLLAAN--TVGGVMGKMISPQSIAIACAAVGL--VGQE---SDLFRKTVKYSLIYAIIV 521 (530)
T ss_pred CCHH--HHHHHH--HHhHHHhhccCHHHHHHHHHHHcc--CCch---hHHHHHHHHHHHHHHHHH
Confidence 8663 333322 222222222356666654322111 1222 566777777776665543
No 108
>PRK10420 L-lactate permease; Provisional
Probab=96.29 E-value=2.4 Score=46.75 Aligned_cols=126 Identities=16% Similarity=0.121 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHhhccccC
Q 010427 363 YSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA--SNVPTVLLLGARVAASAGAISE 440 (511)
Q Consensus 363 w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i--sN~a~~~l~~P~i~~~~a~~~~ 440 (511)
|...+.....+.++.-+.++|....+++.+.. . +.. ..+++-+..++..|+ ||+..-+++.+ ++...|++.|
T Consensus 406 ~~~~iti~~~vala~vm~~SGm~~~la~~~A~-~--G~~--yp~~aP~lG~lG~FvTGS~TsSN~LF~~-lQ~~tA~~lg 479 (551)
T PRK10420 406 ALPIYSIGMVLAFAFISNYSGLSSTLALALAH-T--GHA--FTFFSPFLGWLGVFLTGSDTSSNALFAA-LQATAAQQIG 479 (551)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-h--Ccc--HHHHHHHHHhhhcccccccHHHHHHHHH-HHHHHHHHcC
Confidence 56777888899999999999999888887652 2 221 223445667777888 79999999999 7888888888
Q ss_pred cchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHH
Q 010427 441 SEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITA 503 (511)
Q Consensus 441 ~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~i 503 (511)
.++. |+..+- ++||..--+-|+.|+.+....-.. .|.+ .+-+|.-++.+++..+
T Consensus 480 l~~~--li~Aaq--~~Gg~~GkmIspq~I~~a~a~vg~--~G~E---g~ilr~t~~~~l~~~~ 533 (551)
T PRK10420 480 VSDV--LLVAAN--TTGGVTGKMISPQSIAIACAAVGL--VGKE---SDLFRFTVKHSLIFTC 533 (551)
T ss_pred CCHH--HHHHHH--HHhhHHhhccCHHHHHHHHHHHcc--CCcH---HHHHHHHHHHHHHHHH
Confidence 8653 333322 333332223456666654322111 1222 5556666666655544
No 109
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=96.26 E-value=0.3 Score=51.47 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=96.4
Q ss_pred hCCcHHHHHHHHHHHHHHhccCChHHHH-----hhcChhHHHHHHHHHHHHHHHHhh-ChHHHHHHHhhhhhhcccchhH
Q 010427 331 MGLNMSWTALTAALVLVVLDFKDAMPCL-----DKVSYSLLIFFCGMFITVEGFNKT-GIPSTLWTLMEPHARINRVGGI 404 (511)
Q Consensus 331 ~~l~~~~~al~~a~~l~~~~~~~~~~~~-----~~idw~~ll~f~glf~l~~al~~t-G~~~~ia~~l~~~~~~~~~~~~ 404 (511)
.++++.+..+.+++.+-.....+.+|.. ..-+|+.+-++.++..+.+-++++ |.++.+++.+.+..+. ....
T Consensus 19 ~K~~~~~all~~al~lgl~~G~~~~~i~~~i~~~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l~~l~g~--~~~~ 96 (387)
T TIGR00529 19 KKVNIGLLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGMRTIFSK--NSDS 96 (387)
T ss_pred HhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCc--ccHH
Confidence 3688888887777776665556666665 345699999999999999999999 9999999999876532 2211
Q ss_pred HHHHHHHHHHHHhhchHH-HHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCc
Q 010427 405 SILAIIILVLSNVASNVP-TVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGY 483 (511)
Q Consensus 405 ~~l~~~~~ilS~~isN~a-~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy 483 (511)
+... ++..+ .++ .+.++.|.+ ..++...+.|+...-....++-...=..-|- ++.=+.+.+.. |
T Consensus 97 ~ap~-liG~l-----Pv~~g~vilaPlv-~~la~~~~~s~~~~~~~~~~~~~v~h~~~Pp-~Pgpi~aa~~l------~- 161 (387)
T TIGR00529 97 FVPA-LIGLM-----PMPGGALFSAPMV-KNSLKEERINPEKLTVKNYWFRHTWEFFWPI-YPAVVLVSALS------G- 161 (387)
T ss_pred HHHH-HHHHh-----hHHHHHHHHHHHH-HHHHHHhCcCHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHh------C-
Confidence 2222 12222 224 445578844 5666555655543323333322222222232 22223333322 2
Q ss_pred eeecchhhhhhhHHHHHHHHHHHHHh
Q 010427 484 TLSFWTHLKFGLPSTIVITAIGLALI 509 (511)
Q Consensus 484 ~i~f~df~k~G~plt~l~~iv~~~~i 509 (511)
.+..++..+|+|.++...+++.++.
T Consensus 162 -~~lg~~il~gl~i~i~~~i~G~~~~ 186 (387)
T TIGR00529 162 -IHPGKVSLTLFPVFAIAFFLGWFFF 186 (387)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2457778888888888877776655
No 110
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=95.96 E-value=0.82 Score=48.12 Aligned_cols=139 Identities=22% Similarity=0.316 Sum_probs=85.5
Q ss_pred HHHHHhcCCChHH---HH-HhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcch
Q 010427 44 MLMIIFKVITPEE---AF-AAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTN 119 (511)
Q Consensus 44 ~~l~~~g~~~~~~---a~-~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN 119 (511)
......+..+.+| ++ +.++++.++.+.+.|+.-+.++.||+.+.+++.+.+..-....++..+-++.++++.. +
T Consensus 231 l~~~~~~~~~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG~~~~l~~~l~~~~ip~~li~~lipFivG~~TGi--~ 308 (385)
T PF04165_consen 231 LAILIYNRFRRKEIKEVLKEALEPKILLLIIGIMIFKEILEATGVVEELPEFLSSLGIPPFLIIALIPFIVGLITGI--T 308 (385)
T ss_pred HHHHHHhccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhH--H
Confidence 3444455556664 33 4589999999999999999999999999999887543212222222222222222221 2
Q ss_pred hhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhh-ccCcccccccchh---hhccCCCccHHHHHHhHHHHHHHHHHH
Q 010427 120 DTCCVILTEFVLKIARQNGVSPHPFLLALASSANV-GSSATPIGNPQNL---VIALQSGISFGKFLLGILPSMLVGVFV 194 (511)
Q Consensus 120 ~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~-Gg~~TpiG~p~Nl---iv~~~~~~~f~~f~~~~lp~~ii~l~~ 194 (511)
.+.+.+-.|++..+... .++ ..+++.+.. |-+. +|..+ +-.++.+-++.+-.+..+|+.++..++
T Consensus 309 ~a~vgi~fPll~~l~~~-----~~~-~~la~~~g~~Gvml----SP~HlCLvlT~eYFk~~~~~v~k~l~~p~~i~~~~ 377 (385)
T PF04165_consen 309 QAFVGIAFPLLAPLIGG-----LPY-LVLAYASGFAGVML----SPVHLCLVLTAEYFKADLGKVYKKLLPPALIFLAA 377 (385)
T ss_pred HHHHHHHHHHHHHhccc-----chH-HHHHHHHHHHHHhh----chHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 45567888998887643 233 345544433 3334 55565 224677889999888777666554443
No 111
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=95.94 E-value=0.3 Score=53.42 Aligned_cols=133 Identities=19% Similarity=0.282 Sum_probs=93.0
Q ss_pred CCChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhc--chhhH
Q 010427 51 VITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALF--TNDTC 122 (511)
Q Consensus 51 ~~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~fl--sN~~t 122 (511)
..+.+|..+.+. +++.+.+...+.++..+..+|....+++.+.+ .+..+.++. -+...+.+|+ |||..
T Consensus 368 ~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~~yp~~a---P~lG~lG~FiTGS~T~S 443 (522)
T PF02652_consen 368 RMSPSQVREALKKTLKQLWPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGAAYPFFA---PFLGWLGSFITGSNTSS 443 (522)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCccHHHHH---HHHHHHhcccccchHHH
Confidence 356665554432 67889999999999999999999999998876 444343332 2223444454 58888
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc-CCCc--cHHHHHHhHHHHHHHH
Q 010427 123 CVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL-QSGI--SFGKFLLGILPSMLVG 191 (511)
Q Consensus 123 ~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-~~~~--~f~~f~~~~lp~~ii~ 191 (511)
-++|.++=.+.|++.|.||..+.-.-..++..|.+. +|+|+.+.. .-|. +=.+-++..+|.+++-
T Consensus 444 N~lF~~lQ~~~A~~lgl~~~l~~Aaq~~Gg~~g~mI----sp~~i~~a~a~~g~~g~Eg~ilr~t~~~~l~~ 511 (522)
T PF02652_consen 444 NALFGPLQVTTAQQLGLPPLLIAAAQNVGGAMGNMI----SPQNIVAAAAAVGLSGKEGEILRKTLPPSLIY 511 (522)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 899999999999999999977666666777766654 789998752 1121 2356667667665543
No 112
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=95.82 E-value=1.5 Score=47.55 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=102.9
Q ss_pred CChHHHHHhCCh------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhc---c-CchhHHHHHHHHHHHHHhhcchhh
Q 010427 52 ITPEEAFAAIDL------SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRS---R-GAKDLLCRICFISALSSALFTNDT 121 (511)
Q Consensus 52 ~~~~~a~~~~~~------~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~---~-~~~~ll~~~~~~~~~lS~flsN~~ 121 (511)
.+.+|..+.+.- ..+++.++.--....++.++.-+.++.+....- + +...++..+.++++++.-|+....
T Consensus 327 ks~~Dv~~~m~~g~~~m~~~ivl~F~~Aqfia~F~~snlG~ilav~gA~~L~~~~l~~~pl~i~~ill~a~iNlfI~SgS 406 (508)
T PRK11339 327 RRQADLPHLMIEPMKEMAGFIVMVFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGS 406 (508)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHccccHH
Confidence 456776665532 122333333334455678888888887654332 2 345666778888999998887655
Q ss_pred H-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccch-hhh--ccC--CCccHHHHHHhHHHHHHHHHHHH
Q 010427 122 C-CVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQN-LVI--ALQ--SGISFGKFLLGILPSMLVGVFVN 195 (511)
Q Consensus 122 t-~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~N-liv--~~~--~~~~f~~f~~~~lp~~ii~l~~~ 195 (511)
. .+++.|+...+....|++|..--.+-=++-++--..||. +|-- +++ .+. .+.++.++++.++|.++.-++..
T Consensus 407 akwai~aPIfVPm~~llGisPe~tq~AyRiGDs~TNiItPl-~~y~~lil~~~~~y~k~~g~Gtlis~mlPysi~~lv~w 485 (508)
T PRK11339 407 AIWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAPV-SPFVPLFLGFLQRYKPDAKLGTYYSLVLPYPLIFLVVW 485 (508)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHccchhhhcCCc-hHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHHHHH
Confidence 5 689999999999999999987666666666665666665 2222 112 233 36899999999999998877766
Q ss_pred HHHHHHHHHHhhc
Q 010427 196 TLILLCMYWRILS 208 (511)
Q Consensus 196 ~~~~~~~~~~~Lp 208 (511)
.+++..++.--||
T Consensus 486 ~~ll~~w~~~glP 498 (508)
T PRK11339 486 LLMLLAWYLVGLP 498 (508)
T ss_pred HHHHHHHHHhCCC
Confidence 6554444444444
No 113
>PRK10472 low affinity gluconate transporter; Provisional
Probab=95.76 E-value=1 Score=48.28 Aligned_cols=162 Identities=12% Similarity=-0.033 Sum_probs=90.4
Q ss_pred HHhCCcHHHHHHHHHHHHHHhccCChHHHHhhc----C--h-hHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccc
Q 010427 329 LLMGLNMSWTALTAALVLVVLDFKDAMPCLDKV----S--Y-SLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRV 401 (511)
Q Consensus 329 ~~~~l~~~~~al~~a~~l~~~~~~~~~~~~~~i----d--w-~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 401 (511)
...++++.+..+.+++.+.+....+.++..+.+ . + .+...+.-..+++.-+|+||.++.+++.+.+..+. .
T Consensus 22 ~k~kl~~fialli~Alivgl~~Gmp~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~fG~--k 99 (445)
T PRK10472 22 MKARMHAFVALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGH--S 99 (445)
T ss_pred HHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCc--c
Confidence 345789988888888887776666555543333 1 1 22234444455788999999999999999876432 2
Q ss_pred hhHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhc-ChhhhhhhhHHHHHhhhhccC
Q 010427 402 GGISILAIIILVLSN-VASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAG-NLSLLGSAANLIVCEQARRSK 479 (511)
Q Consensus 402 ~~~~~l~~~~~ilS~-~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg-~lTpiGs~aNliv~~~~~~~~ 479 (511)
...+.+.+...+++- +.-. ..-.++.|+ ...++...+.+....-..++.+-...- +.-| .++.+...
T Consensus 100 r~~~A~~l~g~iv~iPvF~d-v~fvil~Pl-~~~la~~~~~s~~~~~~~l~~gl~~~H~~vPP---~Pgp~a~a------ 168 (445)
T PRK10472 100 RAHYAIGLAGLICALPLFFE-VAIVLLISV-AFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP---GPAPMLLA------ 168 (445)
T ss_pred cHHHHHHHHHHHHhhHHHHh-hHHHHhHHH-HHHHHHHHCCChHHHHHHHHHHHHhcccccCC---CcHHHHHH------
Confidence 222223222222321 1122 334567884 456676666654333233333322222 3333 34444442
Q ss_pred CCCceeecchhhhhhhHHHHHHHHH
Q 010427 480 PSGYTLSFWTHLKFGLPSTIVITAI 504 (511)
Q Consensus 480 ~ggy~i~f~df~k~G~plt~l~~iv 504 (511)
+.+..+-...+=+|+...+...++
T Consensus 169 -~~l~adlG~~il~Glivaip~~~i 192 (445)
T PRK10472 169 -SQMNADFGWMILIGLCAAIPGMII 192 (445)
T ss_pred -HHhCCCHHHHHHHHHHHHHHHHHH
Confidence 233334677788888888777555
No 114
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.59 E-value=3.2 Score=42.45 Aligned_cols=355 Identities=17% Similarity=0.174 Sum_probs=180.9
Q ss_pred hHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHhhcchhhHHH-HHHHHHH
Q 010427 54 PEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAK-DLLCRICFISALSSALFTNDTCCV-ILTEFVL 131 (511)
Q Consensus 54 ~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~-~ll~~~~~~~~~lS~flsN~~t~~-i~~Pi~~ 131 (511)
|++.+...+|++++-+=--..++..+||+|..+.+=+.+-+.-+..| .+-..+.++++++.+-..-+++.+ .|-=|.+
T Consensus 55 p~Ri~GiMsN~tLlAIPfF~fMG~vlErsglae~ll~tig~lfg~v~gglA~avi~VgallaatTGvVaAsVvaMGlISl 134 (447)
T COG4664 55 PQRIFGIMSNDTLLAIPFFTFMGLVLERSGLAEDLLETIGQLFGPVRGGLAYAVIIVGALLAATTGVVAASVVAMGLISL 134 (447)
T ss_pred HHHHHHHhcCCeeeeeHHHHHHHHHHHhcchHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhchHHHHHHHhhhhcc
Confidence 56777778899875444444556778999999998887655444322 344455566666666555554443 3544555
Q ss_pred HHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhh---ccCCCccHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhh
Q 010427 132 KIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVI---ALQSGISFGKFLLGI-LPSMLVGVFVNTLILLCMYWRIL 207 (511)
Q Consensus 132 ~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv---~~~~~~~f~~f~~~~-lp~~ii~l~~~~~~~~~~~~~~L 207 (511)
.+--+.|.|++.- .=.++| +|.+.-+ -||.+++ ..+.|.|..|-.... +|-.....++. .+...+-.+
T Consensus 135 piMLryGYd~~lA--sGvIaA--sGTLgqi-IPPSlvLIVladqlG~SVgdly~gal~PGl~l~~~y~---~yili~a~l 206 (447)
T COG4664 135 PIMLRYGYDRKLA--SGVIAA--SGTLGQI-IPPSLVLIVLADQLGRSVGDLYAGALIPGLMLVGLYA---LYILIMAIL 206 (447)
T ss_pred hHHHHhCCCcccc--ceeEec--Cceeeee-cCcceeeeeeHHhhCCcHHHHHHHhhhhhHHHHHHHH---HHHHHHHHh
Confidence 5666778876431 111222 2333333 3555533 256788998887654 45443333332 223334444
Q ss_pred cccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccCCCcccccccchhhhhHHHHHHHhhcc
Q 010427 208 SVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLSGGEFESTQNSVASKDQAAEIIVARGD 287 (511)
Q Consensus 208 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (511)
.++.-+ ..+++. |+.
T Consensus 207 ~P~~aP-------------aLP~ea---------------r~~------------------------------------- 221 (447)
T COG4664 207 RPKSAP-------------ALPLEA---------------RTL------------------------------------- 221 (447)
T ss_pred CcccCC-------------CCCHHH---------------hhc-------------------------------------
Confidence 211100 000000 000
Q ss_pred ccccCCcccccccccCCcccchhhHHHHHHH-HHHHHHHHHH-HHhCC----cHHHHHHHHHHHHHHh-ccCChH---HH
Q 010427 288 IELGVSPKLAEGKKDNTQKWDWKRVSWKTCT-YLVILGMLIA-LLMGL----NMSWTALTAALVLVVL-DFKDAM---PC 357 (511)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~l~~-~~~~l----~~~~~al~~a~~l~~~-~~~~~~---~~ 357 (511)
. .++....|+.. +... -++++..+++ .+.|+ .-+.....||.++... +..+.+ |+
T Consensus 222 -------------~-~~~~~l~~~vv-~~~iPplvLi~lVLGtIf~GiaTpTE~gA~G~~GA~~LA~~~~~l~w~~~~~a 286 (447)
T COG4664 222 -------------G-GSGRQLVKRVV-QSLIPPLVLIFLVLGTIFFGIATPTEGGAVGAVGALLLALANGRLNWQMVKQA 286 (447)
T ss_pred -------------c-ccHHHHHHHHH-HHhcchHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHhCcccHHHHHHH
Confidence 0 00000001110 0000 0111122222 22343 2222334556655544 334443 22
Q ss_pred H---hhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 010427 358 L---DKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAAS 434 (511)
Q Consensus 358 ~---~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~ 434 (511)
. .++.--+++.+.|--..+-.+.-.|...|+-+++.+.- .++.+-..+.-.+..++.-|++=.-.+-+..|+.+ -
T Consensus 287 ~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~lp-gg~igFli~~~~~iF~LgffldffEiafIivPlla-P 364 (447)
T COG4664 287 LDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTNLP-GGEIGFLIVSNILIFFLGFFLDFFEIAFIIVPLLA-P 364 (447)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHHHHhcCC-CCceeeehHHHHHHHHHHHHHHHHHHHHHHHHhhH-H
Confidence 2 12333345566666667777777888888888776542 22222222233456677888888888888888553 4
Q ss_pred hccccCcchhHHHHHHHHHHh-hhcChh-hhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHH
Q 010427 435 AGAISESEEKKAWLILAWVST-VAGNLS-LLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLA 507 (511)
Q Consensus 435 ~a~~~~~~~~~~~~~l~~~~~-~gg~lT-piGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~ 507 (511)
+++..+.|. -|+-...+.+ -.+|++ |.|-. +.. +|.-.|. .++-.|-.+=..|...+++++-..
T Consensus 365 va~~lgIDl--iwfGVll~~NlQtSFl~PPfgfs--lfY---LrgVAp~--~VTt~qIy~G~vPfiliqvl~~~~ 430 (447)
T COG4664 365 VADKLGIDL--IWFGVLLGVNLQTSFLHPPFGFS--LFY---LRGVAPP--SVTTGQIYRGAVPFILIQVLVVIL 430 (447)
T ss_pred HHHHcCCcH--HHHHHHHHHhhhhhccCCCchhh--HHH---hccCCCC--CcchhhhhhccccHHHHHHHHHHH
Confidence 666677765 4665555555 556777 45542 222 2222233 345777777777888877665443
No 115
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=95.57 E-value=2.2 Score=46.49 Aligned_cols=153 Identities=10% Similarity=0.077 Sum_probs=102.1
Q ss_pred CChHHHHHhCCh------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhc---c-CchhHHHHHHHHHHHHHhhcchh-
Q 010427 52 ITPEEAFAAIDL------SVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRS---R-GAKDLLCRICFISALSSALFTND- 120 (511)
Q Consensus 52 ~~~~~a~~~~~~------~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~---~-~~~~ll~~~~~~~~~lS~flsN~- 120 (511)
.+.+|..+.+.. ..+++++-.--+...++++++.+.++.+....- + +....+..+.++++++.-|+...
T Consensus 329 k~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~~l~~~~~~i~~~l~~~~iNlfI~S~S 408 (513)
T TIGR00819 329 RGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALICAFICLFIASAS 408 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHheeccHH
Confidence 466777766532 223333333445566899999999998765433 2 34456677788888898887654
Q ss_pred hHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccch---hhhc---c--CCCccHHHHHHhHHHHHHHHH
Q 010427 121 TCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQN---LVIA---L--QSGISFGKFLLGILPSMLVGV 192 (511)
Q Consensus 121 ~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~N---liv~---~--~~~~~f~~f~~~~lp~~ii~l 192 (511)
+-.+++.|+...++...|++|..-..+--++-++.-..| |++ -++. + ..+.++.+.+..++|.++.-+
T Consensus 409 gkwal~aPI~vPm~~~lGisp~~t~~AyriGDs~tNiIt----P~~~y~~lil~~~~~y~k~~g~Gtl~s~mlPysi~~l 484 (513)
T TIGR00819 409 AIWAILAPIFVPMFMLAGFAPAFAQAAFRIADSSTLIIA----PMMPFFGLFLAFLMKYKKDAGLGTLISLMLPYPAFFL 484 (513)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhchHHHhhc----cCcchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 447899999999999999999876666666655544444 555 2221 2 234789999999999988777
Q ss_pred HHHHHHHHHHHHH-hhc
Q 010427 193 FVNTLILLCMYWR-ILS 208 (511)
Q Consensus 193 ~~~~~~~~~~~~~-~Lp 208 (511)
+...+++..++.- -+|
T Consensus 485 ~~w~~l~~~w~~~~glP 501 (513)
T TIGR00819 485 IAWIALFCAWVFVLGLP 501 (513)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 6665554443333 345
No 116
>PRK10034 fructuronate transporter; Provisional
Probab=95.39 E-value=1.4 Score=47.42 Aligned_cols=162 Identities=15% Similarity=0.045 Sum_probs=89.9
Q ss_pred HHhCCcHHHHHHHHHHHHHHhccCChHH-------HHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccc
Q 010427 329 LLMGLNMSWTALTAALVLVVLDFKDAMP-------CLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRV 401 (511)
Q Consensus 329 ~~~~l~~~~~al~~a~~l~~~~~~~~~~-------~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 401 (511)
...++++.+..+++++.+.+....+..| -+.+.=++..+.+....+++.-+|+||.++.+++.+.+..+..
T Consensus 21 ~k~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~k-- 98 (447)
T PRK10034 21 LKFKINSMVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLR-- 98 (447)
T ss_pred HHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCcc--
Confidence 3357888888888888777665544433 3344556777777777779999999999999999998765422
Q ss_pred hhHHHHHHHHHHHH-HhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCC
Q 010427 402 GGISILAIIILVLS-NVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKP 480 (511)
Q Consensus 402 ~~~~~l~~~~~ilS-~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ 480 (511)
...+.+.+...+++ ...-. ....++.|+ +..++...+.+....-..++.+...+-.+-| -.++.+...
T Consensus 99 r~~~a~~l~g~llGi~vF~d-v~~v~laPi-~~~lak~~~~s~~~~~~~l~~gl~~~h~lvP--P~Pgpla~a------- 167 (447)
T PRK10034 99 YVQLSVIIIGLIFGLAMFYE-VAFIMLAPL-VIVIAAEAKIPFLKLAIPAVAAATTAHSLFP--PQPGPVALV------- 167 (447)
T ss_pred chHHHHHHHHHHHhhHHHHH-hHHHhhHHH-HHHHHHHhCcCHHHHHHHHHHHHHHhhcccC--CCCcHHHHH-------
Confidence 22222222222221 01111 222346784 4556655555544333333333333333322 233444332
Q ss_pred CCceeecchhhhhhhHHHHHHHH
Q 010427 481 SGYTLSFWTHLKFGLPSTIVITA 503 (511)
Q Consensus 481 ggy~i~f~df~k~G~plt~l~~i 503 (511)
+.+..+-.+.+=+|++..+...+
T Consensus 168 ~~l~a~lG~~il~Gl~v~ip~~~ 190 (447)
T PRK10034 168 NAYGADMGMVYIYGVLVTIPSVI 190 (447)
T ss_pred HHhCCcHHHHHHHhhHHHHHHHH
Confidence 22333456777788766666633
No 117
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=95.19 E-value=1.5 Score=47.01 Aligned_cols=164 Identities=15% Similarity=0.042 Sum_probs=92.6
Q ss_pred HhCCcHHHHHHHHHHHHHHhccCChHHHHhhcC-------hhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccch
Q 010427 330 LMGLNMSWTALTAALVLVVLDFKDAMPCLDKVS-------YSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVG 402 (511)
Q Consensus 330 ~~~l~~~~~al~~a~~l~~~~~~~~~~~~~~id-------w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 402 (511)
..++|+....+.+++..-+....+.+|..+.+. -++-+.++-.-+++.-+++||.+|.+++.+.+..+....
T Consensus 19 k~klhpF~aLl~~al~~gl~~G~~~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~- 97 (441)
T PF02447_consen 19 KFKLHPFLALLIVALIVGLLAGMPPEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRA- 97 (441)
T ss_pred HHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcc-
Confidence 346777777777777666655566655544332 233344444455788999999999999999776542221
Q ss_pred hHHHHHHHHHHHH--HhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCC
Q 010427 403 GISILAIIILVLS--NVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKP 480 (511)
Q Consensus 403 ~~~~l~~~~~ilS--~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ 480 (511)
.+.+.+...+++ -|.+ + .-.++.|++ ..++...+.+.......++.+....-.+.| -.++.+...
T Consensus 98 -~~A~~i~g~iv~IPvF~d-v-~~viL~Pl~-~~la~~~~~s~~~~~~~l~~gl~~~h~lvP--PtPgpla~a------- 164 (441)
T PF02447_consen 98 -PLALAITGFIVGIPVFFD-V-GFVILAPLA-FSLARKTGKSLLYLALPLAAGLSVTHALVP--PTPGPLAAA------- 164 (441)
T ss_pred -cHHHHHHHHHhhhHHHHH-H-HHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHhhhccC--CCCcHHHHH-------
Confidence 222222233333 3333 4 457788954 567766666543222223332223222222 234455442
Q ss_pred CCceeecchhhhhhhHHHHHHHHHHHH
Q 010427 481 SGYTLSFWTHLKFGLPSTIVITAIGLA 507 (511)
Q Consensus 481 ggy~i~f~df~k~G~plt~l~~iv~~~ 507 (511)
+.+..+..+++=+|++..+...+++-+
T Consensus 165 ~~lg~dlG~~il~Gl~vaip~~~iag~ 191 (441)
T PF02447_consen 165 GALGADLGLVILYGLIVAIPAMLIAGP 191 (441)
T ss_pred HHhCCChhHHHHHhHHHHHHHHHHHHH
Confidence 233445788888999888887766533
No 118
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=94.83 E-value=0.96 Score=49.68 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=90.8
Q ss_pred CChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhc--chhhHH
Q 010427 52 ITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALF--TNDTCC 123 (511)
Q Consensus 52 ~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~fl--sN~~t~ 123 (511)
.+.+|..+.+. +.+.+.....+.++..++.+|..+.+|+.+.. .++.+.++. -....+.+|+ |||..-
T Consensus 375 ~~~~~~~~~~~~t~k~~~~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G~~yp~~a---P~iG~lG~FiTGS~TsSN 450 (530)
T TIGR00795 375 VSISDAIGVFGETLKEMRLPILTIGMVLAFANVSNYSGMSKTLALALAH-TGLAFTFFS---PFLGWLGVFLTGSDTSSN 450 (530)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hCCchHHHH---HHHHhhhcccccchHHHH
Confidence 45555444432 55677888888899999999999999999886 544444332 2333445555 799999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc-CCCc--cHHHHHHhHHHHHHH
Q 010427 124 VILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL-QSGI--SFGKFLLGILPSMLV 190 (511)
Q Consensus 124 ~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-~~~~--~f~~f~~~~lp~~ii 190 (511)
++|.++=.+.|++.|.+|..++-.-..++..|.+. +|+|+.+.. .-|. +=.+-++..++.+++
T Consensus 451 ~LFg~lQ~~tA~~lGl~~~li~A~q~~Gg~~G~mI----sp~~I~~a~a~vg~~G~Eg~ilr~t~~~~l~ 516 (530)
T TIGR00795 451 LLFGSLQLLTAEQIGLPETLLLAANTVGGVMGKMI----SPQSIAIACAAVGLVGQESDLFRKTVKYSLI 516 (530)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhHHHhhcc----CHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 99999999999999999877666677777777655 789998752 1111 234555655555444
No 119
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=94.56 E-value=0.048 Score=54.90 Aligned_cols=74 Identities=26% Similarity=0.254 Sum_probs=52.8
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHH
Q 010427 111 ALSSALFTNDTCCVILTEFVLKIARQNGVS-PHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSML 189 (511)
Q Consensus 111 ~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~-p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~i 189 (511)
-..|+.+||-+-++. .++.++... -+..+|.+-.+ |||+-| ||-||++.++..++++.||.+.|+|..+
T Consensus 265 NmiSAvlDNATLaAA------EIsP~m~~~qi~aiLmgLliS---GGMlIP-GNIPNIIsAgkL~I~skEWar~gvPlGl 334 (347)
T PF07854_consen 265 NMISAVLDNATLAAA------EISPEMSEEQIRAILMGLLIS---GGMLIP-GNIPNIISAGKLKITSKEWARLGVPLGL 334 (347)
T ss_pred hHHHHHHhhHHHHHH------HhCcccCHHHHHHHHHHHHHc---CCeecC-CCcchhhccccCccchHHHHHHcccHHH
Confidence 356889999887665 223333222 12455555543 788877 9999999999999999999999999876
Q ss_pred HHHHH
Q 010427 190 VGVFV 194 (511)
Q Consensus 190 i~l~~ 194 (511)
+.+.+
T Consensus 335 ~~m~~ 339 (347)
T PF07854_consen 335 VLMVV 339 (347)
T ss_pred HHHHH
Confidence 65443
No 120
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=94.55 E-value=2.5 Score=45.18 Aligned_cols=159 Identities=8% Similarity=-0.040 Sum_probs=84.9
Q ss_pred HhCCcHHHHHHHHHHHHHHhccCChHHHHhhc-------ChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccch
Q 010427 330 LMGLNMSWTALTAALVLVVLDFKDAMPCLDKV-------SYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVG 402 (511)
Q Consensus 330 ~~~l~~~~~al~~a~~l~~~~~~~~~~~~~~i-------dw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 402 (511)
..++++....+++++.+.+....+.+|.++.+ =-+.-+.++..-+++.-+++||.++.+++.+.+..+. ..
T Consensus 19 k~Kl~pf~alli~a~~~gl~~Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G~--kr 96 (438)
T PRK14984 19 RFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGK--KH 96 (438)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhCc--cc
Confidence 35678887788788777766666665554332 2233344444445688999999999999999765432 22
Q ss_pred hHHHHHHHHHHHHHhhch-H-HHHHHHHHHHHHhhccccCcchhHHHHHHHHHH--hhhcChhhhhhhhHHHHHhhhhcc
Q 010427 403 GISILAIIILVLSNVASN-V-PTVLLLGARVAASAGAISESEEKKAWLILAWVS--TVAGNLSLLGSAANLIVCEQARRS 478 (511)
Q Consensus 403 ~~~~l~~~~~ilS~~isN-~-a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~--~~gg~lTpiGs~aNliv~~~~~~~ 478 (511)
..+.+.+.+.+++ ++- . ..-.++.|+ +..++...+.+- ..+.....+ +..-.+.| +++ +.+...
T Consensus 97 ~~~a~~l~~~il~--ipvF~dv~fvil~Pi-~~~lak~~~~~~--~~~~~~l~~gl~~th~~vP-P~P-gpla~a----- 164 (438)
T PRK14984 97 IQWAVVLTGFTVG--FALFYEVGFVLMLPL-VFTIAASANIPL--LYVGVPMAAALSVTHGFLP-PHP-GPTAIA----- 164 (438)
T ss_pred hHHHHHHHHHHHh--hHHHHHHHHHHHHHH-HHHHHHHhCcCh--HHHHHHHHHHHHHHHhCCC-CCC-cHHHHH-----
Confidence 2333333334443 111 1 122367884 456665545432 222222222 11111211 333 344332
Q ss_pred CCCCceeecchhhhhhhHHHHHHHHH
Q 010427 479 KPSGYTLSFWTHLKFGLPSTIVITAI 504 (511)
Q Consensus 479 ~~ggy~i~f~df~k~G~plt~l~~iv 504 (511)
+.+..+-...+=+|+...+...++
T Consensus 165 --~~lgadlG~~il~Glivaip~~~i 188 (438)
T PRK14984 165 --TIFNADMGKTLLYGTILAIPTVIL 188 (438)
T ss_pred --HHhCCCHHHHHHHhHHHHHHHHHH
Confidence 223334677788888777777444
No 121
>COG1288 Predicted membrane protein [Function unknown]
Probab=94.39 E-value=2 Score=45.34 Aligned_cols=145 Identities=12% Similarity=0.203 Sum_probs=95.3
Q ss_pred HhcCCChHHHHHhCChhHHHHHHHHHHHHHH------HHHhcHHHHHHHHHHHhccC-chh-HHHHHHHHHHHHHhhc-c
Q 010427 48 IFKVITPEEAFAAIDLSVLGLLFGTMVVSFY------LERAGMFKYLEIVLSWRSRG-AKD-LLCRICFISALSSALF-T 118 (511)
Q Consensus 48 ~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~------l~~tG~~~~ia~~l~~~~~~-~~~-ll~~~~~~~~~lS~fl-s 118 (511)
+.+-++-+|+.+.|....==++.+.++++-| +++.-+.|-+=+.......+ +.. ..+...++-++++=|+ |
T Consensus 316 ~I~glse~~~~~sF~~Ga~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~lsgls~~~f~i~mli~~~~l~f~VpS 395 (481)
T COG1288 316 LIGGLSENDIASSFIEGASDLLGVALIIGLARGINLIMDDGMILDTILNYLASLLSGLSSAVFAIGMLIFQALLNFFVPS 395 (481)
T ss_pred HHhccchhHHHHHHHHhHHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHheEEEeC
Confidence 4456788899988876655556666666554 55555666666655444333 333 4444555556666444 5
Q ss_pred hhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc---cCCCccHHHHHHhHHHHHHHHHHHH
Q 010427 119 NDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA---LQSGISFGKFLLGILPSMLVGVFVN 195 (511)
Q Consensus 119 N~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~---~~~~~~f~~f~~~~lp~~ii~l~~~ 195 (511)
...-+++-+||.-.+++-.|+++.....+- +.|.-.+.+=+|+.-++. ...+++|..|+|...|+..+-+++.
T Consensus 396 ~SG~A~ltMPImAPLaD~vgv~RqvvV~Af----q~g~G~~n~I~PTSg~~ma~La~~~i~y~~W~Kfv~pl~~i~~li~ 471 (481)
T COG1288 396 GSGLAVLTMPIMAPLADLVGVPRQVVVLAF----QLGDGFSNIIAPTSGLLMATLAMARVPYGTWLKFVAPLLGILFLIS 471 (481)
T ss_pred CCchhHhhchhhhhhHHhcCCCHHHhhhhh----hhcchhhheecCchHHHHHHHHHccCChhHHHHHHHHHHHHHHHHH
Confidence 667788999999999999999876654433 345555555577744443 4568999999999999876655544
Q ss_pred H
Q 010427 196 T 196 (511)
Q Consensus 196 ~ 196 (511)
.
T Consensus 472 ~ 472 (481)
T COG1288 472 S 472 (481)
T ss_pred H
Confidence 3
No 122
>PRK10420 L-lactate permease; Provisional
Probab=94.18 E-value=1.9 Score=47.52 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=82.0
Q ss_pred CChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhc--chhhHH
Q 010427 52 ITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALF--TNDTCC 123 (511)
Q Consensus 52 ~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~fl--sN~~t~ 123 (511)
.+.++..+.+. +++.+.+...+.++..+..+|...-+++.+. ..++.+.++ .-+...+.+|+ |||..-
T Consensus 389 ~~~~~~~~~~~~t~k~~~~~~iti~~~vala~vm~~SGm~~~la~~~A-~~G~~yp~~---aP~lG~lG~FvTGS~TsSN 464 (551)
T PRK10420 389 MKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALA-HTGHAFTFF---SPFLGWLGVFLTGSDTSSN 464 (551)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH-HhCccHHHH---HHHHHhhhcccccccHHHH
Confidence 45555544432 5678999999999999999999999999776 333333333 23333455555 789999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc
Q 010427 124 VILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA 170 (511)
Q Consensus 124 ~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~ 170 (511)
++|.++=.+.|++.|.+|..+.-.-..++..|.+. +|+|+.+.
T Consensus 465 ~LF~~lQ~~tA~~lgl~~~li~Aaq~~Gg~~GkmI----spq~I~~a 507 (551)
T PRK10420 465 ALFAALQATAAQQIGVSDVLLVAANTTGGVTGKMI----SPQSIAIA 507 (551)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHhhcc----CHHHHHHH
Confidence 99999999999999999876666666777766654 78999875
No 123
>COG4756 Predicted cation transporter [General function prediction only]
Probab=94.16 E-value=1.4 Score=43.22 Aligned_cols=64 Identities=27% Similarity=0.302 Sum_probs=42.4
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHH--HHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCC
Q 010427 108 FISALSSALFTNDTCCVILTEFVLKI--ARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSG 174 (511)
Q Consensus 108 ~~~~~lS~flsN~~t~~i~~Pi~~~i--a~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~ 174 (511)
..-.+.|+.+|-..+++++.-+..-+ .++.+. ++..--+|+-..|..+||+|.|-..+.....+
T Consensus 122 f~lGL~SSvISviV~AvIlAEia~~~n~~r~~Kv---~~vVya~FAvG~GAALtPiGEPLSTIav~KLn 187 (367)
T COG4756 122 FGLGLSSSVISVIVAAVILAEIAGFANAPRAYKV---RAVVYAAFAVGAGAALTPIGEPLSTIAVAKLN 187 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhce---eeeeeeeehhccccccCcCCCccHHHHHHHHc
Confidence 33445677777777778777554433 222222 33444578888899999999999988875443
No 124
>PRK09821 putative transporter; Provisional
Probab=94.14 E-value=7.3 Score=41.98 Aligned_cols=166 Identities=13% Similarity=0.011 Sum_probs=94.0
Q ss_pred HHhCCcHHHHHHHHHHHHHHhccCChHHHHhh-------cChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccc
Q 010427 329 LLMGLNMSWTALTAALVLVVLDFKDAMPCLDK-------VSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRV 401 (511)
Q Consensus 329 ~~~~l~~~~~al~~a~~l~~~~~~~~~~~~~~-------idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 401 (511)
...++++....+++++...+....+.+|..+. .=-+..+++...-.++.-+|+||.++.+++.+.+..+.+
T Consensus 22 ~k~kl~pf~alii~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~~~G~k-- 99 (454)
T PRK09821 22 IKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTRKLGDK-- 99 (454)
T ss_pred HHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC--
Confidence 34568888877777777666655555444332 222333444444457888999999999999998765432
Q ss_pred hhHHHHHHHHHHHH--HhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHH-hhhcChhhhhhhhHHHHHhhhhcc
Q 010427 402 GGISILAIIILVLS--NVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVS-TVAGNLSLLGSAANLIVCEQARRS 478 (511)
Q Consensus 402 ~~~~~l~~~~~ilS--~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~-~~gg~lTpiGs~aNliv~~~~~~~ 478 (511)
...+.+.+.+.+++ -|.+ .+-+++.| +...++...+.+.......++.+. +.-..+.|-..+.|.. +..
T Consensus 100 ~~~~ai~i~~~ilgIpvF~d--v~fvil~P-l~~~l~kk~~~~~~~l~l~~~~~l~~~h~~vPP~Pgp~~~a--~~L--- 171 (454)
T PRK09821 100 RTIAALTLAAFILGIPVFFD--VGFIILAP-IIYGFAKVAKVSPLKFGLPVAGIMLTVHVALPPHPGPVAAA--GLL--- 171 (454)
T ss_pred chHHHHHHHHHHHhhHHHHH--HHHHHHHH-HHHHHHHHhCcCHHHHHHHHHHHHHHcccccCCChHHHHHH--HHh---
Confidence 22223333344443 2322 44457789 445666666655432212222111 2223455666666652 332
Q ss_pred CCCCceeecchhhhhhhHHHHHHHHHHHHHh
Q 010427 479 KPSGYTLSFWTHLKFGLPSTIVITAIGLALI 509 (511)
Q Consensus 479 ~~ggy~i~f~df~k~G~plt~l~~iv~~~~i 509 (511)
|. +-....-+|+...+...+++.++.
T Consensus 172 ---g~--d~g~~~l~Giivaip~~i~g~~~~ 197 (454)
T PRK09821 172 ---HA--DIGWLTIIGIAISIPVGIVGYFAA 197 (454)
T ss_pred ---CC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 356677888888888877766543
No 125
>PRK09695 glycolate transporter; Provisional
Probab=94.06 E-value=1.5 Score=48.35 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHcCCC
Q 010427 63 LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALF--TNDTCCVILTEFVLKIARQNGVS 140 (511)
Q Consensus 63 ~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~fl--sN~~t~~i~~Pi~~~ia~~~~~~ 140 (511)
|...+.+...+.++..++.+|....+|+.+. ..++.+.++ .-+...+.+|+ |||..-++|.++=.+.|++.|.+
T Consensus 414 ~~~~lti~~~vala~vm~~SGm~~~La~~~a-~~G~~yp~~---aP~iG~lG~FvTGS~TsSN~LF~~lQ~~tA~~lGl~ 489 (560)
T PRK09695 414 KWPILSIGMVLAFAFVTNYSGMSTTLALVLA-GTGVMFPFF---SPFLGWLGVFLTGSDTSSNALFGSLQSTTAQQINVS 489 (560)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HhCccHHHH---HHHHhhhhcccccccHHHHHHHHHHHHHHHHHcCCC
Confidence 6678899999999999999999999999885 334334333 22333445555 78999999999999999999999
Q ss_pred chHHHHHHHHHHhhccCcccccccchhhhc
Q 010427 141 PHPFLLALASSANVGSSATPIGNPQNLVIA 170 (511)
Q Consensus 141 p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~ 170 (511)
|..+.-.-..++..|.+. +|+|+.+.
T Consensus 490 ~~li~Aaq~~Gg~~GkmI----spq~I~~a 515 (560)
T PRK09695 490 DTLLVAANTSGGVTGKMI----SPQSIAVA 515 (560)
T ss_pred HHHHHHHHHHhhHHhhcc----CHHHHHHH
Confidence 876666666777666554 88999875
No 126
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=93.87 E-value=0.15 Score=52.31 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=102.2
Q ss_pred CCcHHHHHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHH
Q 010427 332 GLNMSWTALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIII 411 (511)
Q Consensus 332 ~l~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~ 411 (511)
|+.+++..-+|.+++.+.-..++. +.+|++++.+++......++|.+|..|++-+.-++...-++.. ..++.-..
T Consensus 21 GIglG~~GGlGv~il~f~f~~~P~----~~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~-iT~lAP~V 95 (436)
T COG2704 21 GIGLGVAGGLGVLILVFIFGLKPG----KPPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKY-ITILAPFV 95 (436)
T ss_pred ceeeeecccccHHHHhhhhcCCCC----CCChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCe-EEEehhHH
Confidence 367777776777776654434442 6899999999999999999999999998866655544333322 11111112
Q ss_pred HHHHHhhchHHHH-HHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchh
Q 010427 412 LVLSNVASNVPTV-LLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTH 490 (511)
Q Consensus 412 ~ilS~~isN~a~~-~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df 490 (511)
...=.++..+-.+ -...|++ ..++..+|.-|.+|.-+.+..+-.+=..+|+.... +-..+.. +|-|++ +.+-
T Consensus 96 ty~lT~maGTGh~vySilPVI-~eVA~~~gIrPeRPls~avVsSQ~aItASPISAAV-V~~~a~l---~~~g~~--~l~l 168 (436)
T COG2704 96 TYTLTILAGTGHVVYSILPVI-AEVAKKNGIRPERPLSAAVVSSQIAITASPISAAV-VYMSAVL---EPLGIS--YLTL 168 (436)
T ss_pred HHHHHHhhcCCceeeeehhHH-HHHHHHcCCCCCCcchHHHHHhhhhhhcCchHHHH-HHHHHHH---hhcCcc--hhee
Confidence 2222233323222 2335855 56777788888777555554444555667776432 2222333 245664 7888
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 010427 491 LKFGLPSTIVITAIGLAL 508 (511)
Q Consensus 491 ~k~G~plt~l~~iv~~~~ 508 (511)
+-+-.|-|++...+..++
T Consensus 169 l~v~IPaTl~g~~~~~l~ 186 (436)
T COG2704 169 LMVTIPSTLLGVLLMALF 186 (436)
T ss_pred eeEEecHHHHHHHHHHHH
Confidence 899999999888765543
No 127
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.60 E-value=4.3 Score=41.52 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=111.6
Q ss_pred cchhHHHHHHHHHHH-HHhcCCChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHH
Q 010427 32 PIGRTAGALLGAMLM-IIFKVITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLC 104 (511)
Q Consensus 32 ~i~~~~~al~~~~~l-~~~g~~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~ 104 (511)
|-+-.+....|+.++ ..-|.++++...+..+ .-+++.+.|.-..|....-.|-..|+-+++...-+++...+.
T Consensus 257 pTE~gA~G~~GA~~LA~~~~~l~w~~~~~a~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~lpgg~igFli 336 (447)
T COG4664 257 PTEGGAVGAVGALLLALANGRLNWQMVKQALDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTNLPGGEIGFLI 336 (447)
T ss_pred CcccchhhHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHHHHhcCCCCceeeeh
Confidence 333333344555444 3458888876665543 334677777777888888888888998888877778889999
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhc-cCccc-ccccchhhhc---cCCCccHHH
Q 010427 105 RICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVG-SSATP-IGNPQNLVIA---LQSGISFGK 179 (511)
Q Consensus 105 ~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~G-g~~Tp-iG~p~Nliv~---~~~~~~f~~ 179 (511)
....+.+++.=|+|=.=.+.+.+|+...+++++|+|+. ++.+-.+.|+- |+++| .|-. +... .....+-.|
T Consensus 337 ~~~~~iF~LgffldffEiafIivPllaPva~~lgIDli--wfGVll~~NlQtSFl~PPfgfs--lfYLrgVAp~~VTt~q 412 (447)
T COG4664 337 VSNILIFFLGFFLDFFEIAFIIVPLLAPVADKLGIDLI--WFGVLLGVNLQTSFLHPPFGFS--LFYLRGVAPPSVTTGQ 412 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHH--HHHHHHHHhhhhhccCCCchhh--HHHhccCCCCCcchhh
Confidence 99999999999999999999999999999999999964 56666777753 33432 3322 1111 233467777
Q ss_pred HHHhHHHHHHHHHHH
Q 010427 180 FLLGILPSMLVGVFV 194 (511)
Q Consensus 180 f~~~~lp~~ii~l~~ 194 (511)
--+...|...+-++.
T Consensus 413 Iy~G~vPfiliqvl~ 427 (447)
T COG4664 413 IYRGAVPFILIQVLV 427 (447)
T ss_pred hhhccccHHHHHHHH
Confidence 777777776655544
No 128
>PRK09921 permease DsdX; Provisional
Probab=93.54 E-value=6.6 Score=42.28 Aligned_cols=161 Identities=13% Similarity=0.083 Sum_probs=82.7
Q ss_pred HhCCcHHHHHHHHHHHHHHhccCChHHHHhhc----C--h-hHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccch
Q 010427 330 LMGLNMSWTALTAALVLVVLDFKDAMPCLDKV----S--Y-SLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVG 402 (511)
Q Consensus 330 ~~~l~~~~~al~~a~~l~~~~~~~~~~~~~~i----d--w-~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 402 (511)
..++++.+.-+.+++.+-+....+.+|..+.+ - + .+...+...-+++.-+|+||.++.+++.+.+... ..
T Consensus 24 k~k~~~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~~~---~~ 100 (445)
T PRK09921 24 KFKFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRW---LS 100 (445)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhh---hh
Confidence 35678877777777776666555544432221 1 1 2333444455578899999999999999854421 11
Q ss_pred hHHHHHHHHHHH--HHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCC
Q 010427 403 GISILAIIILVL--SNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKP 480 (511)
Q Consensus 403 ~~~~l~~~~~il--S~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ 480 (511)
.......+..+. +-|+. ....++.|+ +..++...+.+..+....++.+....-..-| +++.-+.+.+..
T Consensus 101 ~~~a~~~~gll~~IpvF~~--~~~vil~Pl-~~~lak~~~~s~~~~~~~~~~~~~~~h~~vP-p~Pg~~~~a~~l----- 171 (445)
T PRK09921 101 ADVIMVLVGLICGITLFVE--VGVVLLIPL-AFSIAKKTNTSLLKLAIPLCTALMAVHCVVP-PHPAALFVANKL----- 171 (445)
T ss_pred HHHHHHHHHHHHcccHHHH--hHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHhHhcCC-CCcHHHHHHHHh-----
Confidence 111111111111 12211 223467884 4556655555443322222222222222222 344434444432
Q ss_pred CCceeecchhhhhhhHHHHHHHHHH
Q 010427 481 SGYTLSFWTHLKFGLPSTIVITAIG 505 (511)
Q Consensus 481 ggy~i~f~df~k~G~plt~l~~iv~ 505 (511)
| .+-..+.-+|+|.++...+++
T Consensus 172 -g--~~lg~~~l~Gl~~~i~~~~i~ 193 (445)
T PRK09921 172 -G--ADIGSVIVYGLLVGLMASLVG 193 (445)
T ss_pred -C--CCHHHHHHHHHHHHHHHHHHH
Confidence 2 246778899999997765553
No 129
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=93.32 E-value=2.4 Score=45.76 Aligned_cols=114 Identities=19% Similarity=0.285 Sum_probs=82.1
Q ss_pred cCCChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHhhcchhhH
Q 010427 50 KVITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLL-CRICFISALSSALFTNDTC 122 (511)
Q Consensus 50 g~~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll-~~~~~~~~~lS~flsN~~t 122 (511)
-.++++++.+.+. |..++.+.+.+.++..+..+|.-.-+++.+... +..+.++ -.+.++..++|. |||..
T Consensus 360 ~~~~~~~~~~~~~~t~k~~~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G~~fp~fSp~lGwiG~FltG--S~T~s 436 (522)
T COG1620 360 LKIKPKDAVTAFKETLKELKLPILTIIFALAMAYLMNYSGLSKTLALALAHT-GEAFPLFSPFLGWIGVFLTG--SNTSS 436 (522)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-CCCchhHhHHHHHHhhhhcc--cchHH
Confidence 3677777666543 677899999999999999999998999887655 3333333 345555555543 68888
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc
Q 010427 123 CVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA 170 (511)
Q Consensus 123 ~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~ 170 (511)
-+++-|+=...|++.|.+|..++-.-+.++.+|-|. +|+|+.+.
T Consensus 437 N~lFg~lQ~~~A~~iG~s~~l~~AantvGg~~gkMI----spqsIa~a 480 (522)
T COG1620 437 NLLFGPLQQTTAEQIGLSPVLLVAANTVGGVMGKMI----SPQSIAAA 480 (522)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhcccc----CHHHHHHH
Confidence 899999999999999999866544444444443333 78998775
No 130
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=93.17 E-value=14 Score=39.49 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcC-CCchHHHHHHHHH
Q 010427 73 MVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNG-VSPHPFLLALASS 151 (511)
Q Consensus 73 ~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~-~~p~~~l~~~a~a 151 (511)
.+.+..+.++...++.=+++.+..+++++.+..+.+++.+ .+++|=---.++-.=...++||+.+ ++. |++.+.+|.
T Consensus 65 lvtG~~lA~sp~v~r~l~~la~~p~t~~~ai~~v~~vs~~-~s~inWG~gLV~gallAre~Ar~~~~vdY-~lliAaaY~ 142 (438)
T TIGR00366 65 LVTGYALAYSPIVYKLLKTIASLPKTPKQAVALVTFIGSI-ACWINWGFGLVVGAIFAREVARRVKGSDY-PLLIACAYI 142 (438)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhCCCCCCceeehHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHhccCCCH-HHHHHHHHH
Confidence 3445668999999999999888888888877666554443 4444433333333445668888876 443 777777764
Q ss_pred H
Q 010427 152 A 152 (511)
Q Consensus 152 a 152 (511)
.
T Consensus 143 G 143 (438)
T TIGR00366 143 G 143 (438)
T ss_pred H
Confidence 3
No 131
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=92.61 E-value=12 Score=40.09 Aligned_cols=162 Identities=14% Similarity=0.014 Sum_probs=90.7
Q ss_pred HHhCCcHHHHHHHHHHHHHHhccCChHHHHh-------hcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccc
Q 010427 329 LLMGLNMSWTALTAALVLVVLDFKDAMPCLD-------KVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRV 401 (511)
Q Consensus 329 ~~~~l~~~~~al~~a~~l~~~~~~~~~~~~~-------~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 401 (511)
...++++.+...++++...+....+..+.++ ..=-+.-..++-.-+++.-+|+||.++.+|+.+.+..+ +.
T Consensus 19 i~~kv~~flal~l~al~~gl~~Gm~~~~i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~G--~k 96 (442)
T COG2610 19 IKFKVHPFLALLLVALLVGLLGGMPLLKVVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKFG--EK 96 (442)
T ss_pred HHHhhhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhC--cc
Confidence 4467888887777777666555444443332 22122223333334468889999999999999987654 23
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHh-hhcChhhhhhhhHHHHHhhhhccCC
Q 010427 402 GGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVST-VAGNLSLLGSAANLIVCEQARRSKP 480 (511)
Q Consensus 402 ~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~-~gg~lTpiGs~aNliv~~~~~~~~~ 480 (511)
...+.+.+.+.++|--++=-....++.| ++-.++...+.+....-..++.+.. ..++.-| + ++.+.... +
T Consensus 97 r~~~Al~l~g~i~~~~vF~dv~~v~l~P-ia~alak~~~is~~~i~v~la~g~~~~h~~vpP--~-Pgpia~a~-----~ 167 (442)
T COG2610 97 RALLALVLAGLILGIPVFFDVGFVLLIP-LAFALAKEAGISLLKIAVPLAAGLSVTHMFVPP--H-PGPIAAAG-----P 167 (442)
T ss_pred hHHHHHHHHHHHHhhhHHhhhHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHhcccCCC--C-Cchhhhhh-----h
Confidence 3344455566677665666677788899 4566776666665433333333332 3333433 2 23332210 2
Q ss_pred CCceeecchhhhhhhHHHHHHHH
Q 010427 481 SGYTLSFWTHLKFGLPSTIVITA 503 (511)
Q Consensus 481 ggy~i~f~df~k~G~plt~l~~i 503 (511)
-|+. ...-.-+|..+.+.+.+
T Consensus 168 ~~a~--~g~~il~g~ivaip~~~ 188 (442)
T COG2610 168 FGAD--IGTVILYGLIVAIPTVI 188 (442)
T ss_pred cCcc--hhHHHHHHHHHHHHHHH
Confidence 2332 34455566666655333
No 132
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=91.88 E-value=20 Score=38.36 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcC-CCchHHHHHHHH
Q 010427 72 TMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNG-VSPHPFLLALAS 150 (511)
Q Consensus 72 ~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~-~~p~~~l~~~a~ 150 (511)
+.+.+.++.++-..+++=+++.+.-+++++.+..+.+++ .+.+++|=---.+.-.=+..++||+.+ ++ -|++.+.+|
T Consensus 67 ilvtG~~lA~sp~v~r~l~~lA~~p~t~~~Ai~lv~~vs-~i~s~inWG~gLV~gallArelarr~~~vd-YpllvAaaY 144 (453)
T PF02667_consen 67 ILVTGYALASSPPVKRLLDRLASLPKTPRQAIVLVALVS-MIASWINWGFGLVVGALLARELARRVKGVD-YPLLVAAAY 144 (453)
T ss_pred HHHHHHHHhCChHHHHHHHHHHhcCCCCcceeeHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHhccCCc-HHHHHHHHH
Confidence 345567789999999999998888788888776655544 444444433222233334557787765 43 377777777
Q ss_pred HHh
Q 010427 151 SAN 153 (511)
Q Consensus 151 aan 153 (511)
..-
T Consensus 145 ~g~ 147 (453)
T PF02667_consen 145 SGF 147 (453)
T ss_pred HHH
Confidence 654
No 133
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=91.50 E-value=6.5 Score=41.92 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=69.2
Q ss_pred CCChHHHHHhCChh------HHHHHHHHHHHHHHHHHhcHHH-----HHHHHHHHhccCchhHHHHHHHHHHHHHhhcch
Q 010427 51 VITPEEAFAAIDLS------VLGLLFGTMVVSFYLERAGMFK-----YLEIVLSWRSRGAKDLLCRICFISALSSALFTN 119 (511)
Q Consensus 51 ~~~~~~a~~~~~~~------~i~~l~g~~~i~~~l~~tG~~~-----~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN 119 (511)
..+++|..+.+... .++.+.----+...++++|+.+ .+++.+.... +....-....+.++++.-|+..
T Consensus 291 ~~tp~~~~~a~~~g~~~~~gi~l~fpf~agI~~im~~s~l~~~~ls~~la~~lvs~a-~~~~f~l~~~l~~~liNfFIPS 369 (438)
T TIGR00366 291 HKTPMAYMRAITRAARSVAGILVQFPFYAGIMGMMEHSGVGGGGPATLITEFFINVA-NKDTFPLMTFFSAGLINIFIPS 369 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHhhC-CccHHHHHHHHHHHHHHhcccC
Confidence 67788877665321 2222222223334468888888 7777665432 2223333344677777776654
Q ss_pred -hhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCccc
Q 010427 120 -DTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATP 160 (511)
Q Consensus 120 -~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~Tp 160 (511)
.+-.++..|+...+++..|++|....++..++-...-+.+|
T Consensus 370 GsGqwai~aPImvP~a~~LGvs~~~tv~Ay~~GD~~tNlI~P 411 (438)
T TIGR00366 370 GGGHWAIQGPIVIPAAQALGVDLGKSVMAIAYGDAWTNMAQP 411 (438)
T ss_pred chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHhHHHhhH
Confidence 45578999999999999999999887777777665444433
No 134
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=91.25 E-value=5 Score=40.49 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=67.7
Q ss_pred HhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhc
Q 010427 358 LDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA-SNVPTVLLLGARVAASAG 436 (511)
Q Consensus 358 ~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i-sN~a~~~l~~P~i~~~~a 436 (511)
.++.-| +++++...+.+++.++++|..+.+.+.+..... +...-....++++.+++-.. ||..+..++.|+ ...++
T Consensus 157 ~~~m~~-~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~-~~~~l~~~~~l~~~~~~~~tgs~~~ti~i~~pi-~~~l~ 233 (303)
T PF03553_consen 157 IKSMLP-TIIILILAGALGGILEKTGVLDALVNKLLKKIK-SPRSLPAVTFLLSIIISFATGSSWGTIAIMGPI-FKPLA 233 (303)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-CccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHH
Confidence 344433 555556677789999999977777666654321 12221222333344443322 677788888884 45666
Q ss_pred cccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHH
Q 010427 437 AISESEEKKAWLILAWVSTVAGNLSLLGSAANLIV 471 (511)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv 471 (511)
+..+.++...--.+.-+++.+.++.|++..+-...
T Consensus 234 ~~~g~~~~~~a~ai~~~~~~g~~l~P~s~~~i~~~ 268 (303)
T PF03553_consen 234 EKMGISPPLLAGAIESGATFGDPLSPWSDTTILSS 268 (303)
T ss_pred HHhcccHHHHHHHHHhhhhhcCCCCcchHHHHHHH
Confidence 66777775544445566788889999998654443
No 135
>COG4756 Predicted cation transporter [General function prediction only]
Probab=91.23 E-value=0.17 Score=49.24 Aligned_cols=71 Identities=24% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHHhhcchhhHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHH
Q 010427 111 ALSSALFTNDTCCV-ILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSML 189 (511)
Q Consensus 111 ~~lS~flsN~~t~~-i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~i 189 (511)
-.+|+..||.+-++ -+.|-.-..- -+..+|.+.++ ||++-| ||-||+++.+..++++.||.+.+.|.-+
T Consensus 277 n~~SAv~DNATL~AAevgP~lteeq------irsalmsLvIs---GGmlIP-GNiPNIV~AGrLrItm~EWar~gvP~Gi 346 (367)
T COG4756 277 NLLSAVADNATLVAAEVGPELTEEQ------IRSALMSLVIS---GGMLIP-GNIPNIVMAGRLRITMKEWARLGVPVGI 346 (367)
T ss_pred HHHHHHhcchhhHHHHhCcHhhHHH------HHHHHHHHHHc---CCeecC-CCCcceeeeeeEEeehhhHHHhcccHHH
Confidence 45788899977654 4555432221 12456766654 677766 9999999999999999999999999865
Q ss_pred HH
Q 010427 190 VG 191 (511)
Q Consensus 190 i~ 191 (511)
.-
T Consensus 347 a~ 348 (367)
T COG4756 347 AV 348 (367)
T ss_pred HH
Confidence 43
No 136
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=88.28 E-value=42 Score=37.36 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=69.5
Q ss_pred HHHHHHH-HHHHHHHhcHHHHHHHHHHHhc----cCc-hhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCc
Q 010427 68 LLFGTMV-VSFYLERAGMFKYLEIVLSWRS----RGA-KDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSP 141 (511)
Q Consensus 68 ~l~g~~~-i~~~l~~tG~~~~ia~~l~~~~----~~~-~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p 141 (511)
.+..+|+ .++-++++|.-++.-+...... +++ +.-.....+...+-.+=..|+.++-.+ ++.+-|+.|.+|
T Consensus 190 ~~IflFilFga~l~~~G~g~~fid~a~a~~G~~~GGpak~aVv~Sgl~G~isGSsvAN~vttG~f---TIPlMkR~Gy~~ 266 (642)
T COG4666 190 TFIFLFILFGAFLVKSGAGQFFIDLAFALAGLRRGGPAKVAVVSSGLMGMISGSSVANTVTTGSF---TIPLMKRAGYPP 266 (642)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCCCcceeeecchhheecchhhhhhhhccee---eHHHHHhcCCCh
Confidence 3444444 4566899999999887543222 233 333333333333333444566555432 234567788887
Q ss_pred hHHHHHHHHHHhhccCccc--ccccchhhhccCCCccHHHHHHhHHHHHHHH
Q 010427 142 HPFLLALASSANVGSSATP--IGNPQNLVIALQSGISFGKFLLGILPSMLVG 191 (511)
Q Consensus 142 ~~~l~~~a~aan~Gg~~Tp--iG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~ 191 (511)
..- =++--+|+.||-+.| .|...-++ .+.-|+++.|.....+.++++.
T Consensus 267 ~~A-gAvEaaAS~GGQimPPiMGAAAFiM-ae~~gipY~~ii~aA~iPAlly 316 (642)
T COG4666 267 EFA-GAVEAAASTGGQLMPPVMGAAAFIM-AEYLGIPYTEIILAAFIPALLY 316 (642)
T ss_pred hcc-cceehhhhcCCchhhhhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHH
Confidence 553 455566777887765 44443333 3667899999998877655543
No 137
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=87.41 E-value=35 Score=34.48 Aligned_cols=143 Identities=13% Similarity=0.180 Sum_probs=84.2
Q ss_pred ChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccch-hHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 010427 353 DAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVG-GISILAIIILVLSNVASNVPTVLLLGARV 431 (511)
Q Consensus 353 ~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~-~~~~l~~~~~ilS~~isN~a~~~l~~P~i 431 (511)
+-+|..+++.|..++==. +-.++.-+.+.|+.+.+++.+....+.+... .+..-.+--++.|-+|.|.=++- |++
T Consensus 152 e~~Rll~~vG~a~iLPQl-LAaLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAAF---~Vi 227 (308)
T PF06166_consen 152 ESRRLLDQVGWAAILPQL-LAALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAAF---PVI 227 (308)
T ss_pred HHHHHHHHhhHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHHh---HHH
Confidence 346788999998765211 2345666789999999999987765533222 22222223456788888864443 222
Q ss_pred HHhhc-----cccCcchhHHHHHHHHHHhhhc-ChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHH
Q 010427 432 AASAG-----AISESEEKKAWLILAWVSTVAG-NLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIG 505 (511)
Q Consensus 432 ~~~~a-----~~~~~~~~~~~~~l~~~~~~gg-~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~ 505 (511)
...+. ++.|.||. .--.+.+.+..|| -+||++.==|++=...+|-+ ..|. -.|.=.|..+..+++=
T Consensus 228 TaGIGiPfvi~~~GgnPa-ivgAlgM~aGyCGTLmTPMAANFNiVPaALLElk--Dk~g-----VIKaQ~p~Al~llvv~ 299 (308)
T PF06166_consen 228 TAGIGIPFVIAQFGGNPA-IVGALGMTAGYCGTLMTPMAANFNIVPAALLELK--DKYG-----VIKAQAPTALVLLVVN 299 (308)
T ss_pred HhccCceEEEecCCCCHH-HHHHHHHhhcchhcccChhhhhcCcchHHHhcCC--cccc-----chhhhhHHHHHHHHHH
Confidence 11111 12255664 3344555566666 58999988888766666542 3443 2466677777666554
Q ss_pred HH
Q 010427 506 LA 507 (511)
Q Consensus 506 ~~ 507 (511)
+.
T Consensus 300 I~ 301 (308)
T PF06166_consen 300 IV 301 (308)
T ss_pred HH
Confidence 33
No 138
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=85.52 E-value=60 Score=35.40 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=97.9
Q ss_pred CChHHHHHhCCh------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH---hcc-CchhHHHHHHHHHHHHHhhcchhh
Q 010427 52 ITPEEAFAAIDL------SVLGLLFGTMVVSFYLERAGMFKYLEIVLSW---RSR-GAKDLLCRICFISALSSALFTNDT 121 (511)
Q Consensus 52 ~~~~~a~~~~~~------~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~---~~~-~~~~ll~~~~~~~~~lS~flsN~~ 121 (511)
.+.+|..+.... +.+++.+-.--..+.++.|++...+|.+-.. ..+ +...+++.+.++++++--|+..-.
T Consensus 322 ks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S~S 401 (502)
T PF03806_consen 322 KSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLFIGSAS 401 (502)
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhcch
Confidence 345666655432 2234444444556778999999999975432 222 456778888888999988887665
Q ss_pred H-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhc------c--CCCccHHHHHHhHHHHHHHHH
Q 010427 122 C-CVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIA------L--QSGISFGKFLLGILPSMLVGV 192 (511)
Q Consensus 122 t-~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~------~--~~~~~f~~f~~~~lp~~ii~l 192 (511)
+ =+++.|+.+.+--.+|++|..--+.-= +|=..|-+=+|-+-+.. + ..+.++++.+..++|.++.-+
T Consensus 402 aKWailAPifVPM~m~lg~sP~~tQ~aYR----igDS~TN~ItPl~~yf~lil~~~qkY~k~~giGTlis~mlPysi~~l 477 (502)
T PF03806_consen 402 AKWAILAPIFVPMFMLLGYSPALTQAAYR----IGDSSTNIITPLMPYFPLILGFAQKYDKKAGIGTLISLMLPYSIAFL 477 (502)
T ss_pred hhHHHHHhHHHHHHHHcCCCHHHHHHHHH----hccccccccCccHHHHHHHHHHHHHhCcCccHHHHHHHHHHHHHHHH
Confidence 5 489999999999999999864322222 23333333344443321 1 235789999999999998877
Q ss_pred HHHHHHHHHHHHHhhc
Q 010427 193 FVNTLILLCMYWRILS 208 (511)
Q Consensus 193 ~~~~~~~~~~~~~~Lp 208 (511)
+..++++..++.--+|
T Consensus 478 v~w~~ll~~W~~lglP 493 (502)
T PF03806_consen 478 VVWTLLLIVWYLLGLP 493 (502)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7766555444443444
No 139
>PRK10519 hypothetical protein; Provisional
Probab=83.92 E-value=32 Score=31.28 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=74.6
Q ss_pred HHHHhhcCh-hHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 010427 355 MPCLDKVSY-SLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAA 433 (511)
Q Consensus 355 ~~~~~~idw-~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~ 433 (511)
||.+ ++-| +.+-.+...+++++.++++|+.|++++.+.+..+.-..++-.. ..+++.++|--.++..+.....
T Consensus 16 keG~-~i~~~~iiP~li~~~v~I~iL~~sG~ld~l~~~l~Pvm~llGLPgea~----~vll~g~ls~~~a~~vl~~L~~- 89 (151)
T PRK10519 16 RKGF-TIATTNLLPNVLMAFVIIQALNITGLLDLVGHIFGPVMALFGLPGEAA----TVLLAAWMSMGGAVGVAASLFT- 89 (151)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCCHHHH----HHHHHHHHhHHHHHHHHHHHHH-
Confidence 3444 3667 6888999999999999999999999999887543111122222 3344455564444444444221
Q ss_pred hhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHHHhc
Q 010427 434 SAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALIR 510 (511)
Q Consensus 434 ~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~i~ 510 (511)
....++.+ ..+.....-=.++++.+..-++... |-+ +.|.+.-+-++++.-.++.+.-|
T Consensus 90 ----~G~LT~~Q---~~VL~~~~~l~g~~~~~~~r~~~~~--------~~~---~~~~~~~~~~~~~~a~~~~~~m~ 148 (151)
T PRK10519 90 ----AGALTGHH---VTILLPAIYLMGSQVQYMGRILGVA--------EVN---AKYYPHLIAVCIINALLAMLVMR 148 (151)
T ss_pred ----cCCCCHHH---HHHHHHHHHHhchHHHHHHHhhhcc--------CCC---cchhHHHHHHHHHHHHHHHHHHH
Confidence 11122222 1222222222334445544444332 332 55678888888888888877654
No 140
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=81.96 E-value=8.6 Score=34.55 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHcCCCchHHHH
Q 010427 68 LLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFT-NDTCCVILTEFVLKIARQNGVSPHPFLL 146 (511)
Q Consensus 68 ~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~fls-N~~t~~i~~Pi~~~ia~~~~~~p~~~l~ 146 (511)
++.|+-.+++++++-.- +.+-+.+.+..++++..++ +.+.+++.+. +++++.+.+ .++..--+ +.+-.+
T Consensus 2 ~l~gl~~l~~~l~~~~~-~~~~~~l~~~~~~~~~~~l----~G~~~T~l~QSSsa~~~i~v----~l~~~g~l-~~~~al 71 (142)
T PF02690_consen 2 FLFGLRLLSSGLKPLAG-PRLRALLARLTSNPLLAFL----LGALLTALVQSSSAVTLIVV----SLVAAGVL-SLEQAL 71 (142)
T ss_pred HhhHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHH----HHHHHHHHhcchHHHHHHHH----HHHHhccc-CHHHHH
Confidence 67889999999888766 5665665555666654443 3344444444 344445444 44544334 446679
Q ss_pred HHHHHHhhccCccc
Q 010427 147 ALASSANVGSSATP 160 (511)
Q Consensus 147 ~~a~aan~Gg~~Tp 160 (511)
++.+++|+|+..|+
T Consensus 72 ~~ilGaNiGtt~~~ 85 (142)
T PF02690_consen 72 AIILGANIGTTITA 85 (142)
T ss_pred HHHHhhhHHHHHHH
Confidence 99999999976654
No 141
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=80.02 E-value=29 Score=36.58 Aligned_cols=132 Identities=22% Similarity=0.271 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHhCChhH-------HHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHH
Q 010427 39 ALLGAMLMIIFKVITPEEAFAAIDLSV-------LGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISA 111 (511)
Q Consensus 39 al~~~~~l~~~g~~~~~~a~~~~~~~~-------i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~ 111 (511)
.++|+..+...|. .++++...++. +.++.+.+++=.++++. --+-+.... ++.. ++.-+.
T Consensus 286 iF~G~lfLfFLGf---~~ay~~yQ~~l~Lre~lLVgFFLaGLVvlGglQ~W-----Wlqpll~~m-~~~~----lf~ga~ 352 (438)
T PF07399_consen 286 IFMGALFLFFLGF---TQAYKRYQSPLILREALLVGFFLAGLVVLGGLQQW-----WLQPLLSGM-SPLA----LFFGAT 352 (438)
T ss_pred HHHHHHHHHHHHH---HHHHHhhccchhhhHHHHHHHHHhhHHHcCchHHH-----HHHHHHhcC-ChhH----HHHHHH
Confidence 4666566666664 45565544433 22334444444555554 223222121 2222 345677
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc-------CCCccHHHHHHhH
Q 010427 112 LSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL-------QSGISFGKFLLGI 184 (511)
Q Consensus 112 ~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~-------~~~~~f~~f~~~~ 184 (511)
.+|+|.||-+..-+-. .+ -+.+. .+-..+.-+|-.||-+|-|.|.||.-=.. .++++-..-+...
T Consensus 353 ~LTa~tDNAalTYLgs-lv------~g~sd-~~kYalVAGAVtGGGLTVIANAPNpaG~aiLr~~F~d~~Is~~~L~l~A 424 (438)
T PF07399_consen 353 ALTAFTDNAALTYLGS-LV------PGLSD-AFKYALVAGAVTGGGLTVIANAPNPAGQAILRKHFPDGSISPLGLFLAA 424 (438)
T ss_pred HHHHHhhhHHHHHHHH-hc------cCCCH-HHHHHHHhheeccCceeEeccCCChhhHHHHhccCCCCCcChHHHHHHH
Confidence 8999999987654321 11 12332 34467788888999999999999975431 2457766666666
Q ss_pred HHHHHHH
Q 010427 185 LPSMLVG 191 (511)
Q Consensus 185 lp~~ii~ 191 (511)
+++.++.
T Consensus 425 L~PT~ia 431 (438)
T PF07399_consen 425 LPPTLIA 431 (438)
T ss_pred HhHHHHH
Confidence 6665554
No 142
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=76.41 E-value=41 Score=35.38 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHH----HhcCCChHH---HHHh-CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHH
Q 010427 35 RTAGALLGAMLMI----IFKVITPEE---AFAA-IDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRI 106 (511)
Q Consensus 35 ~~~~al~~~~~l~----~~g~~~~~~---a~~~-~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~ 106 (511)
...+.++|..+.+ +.|+.+-.+ |++. .+...++.+ -|.+++-+.+..+|+-+-++.....++ ..+...
T Consensus 320 lA~VGlIGLsVIil~Taf~Git~EH~iGkAFeEaLPFTALL~V--FF~vVaVI~dQ~LF~PiI~~VL~~~~~--~Ql~~f 395 (515)
T PF06450_consen 320 LAEVGLIGLSVIILATAFCGITDEHAIGKAFEEALPFTALLVV--FFAVVAVIIDQHLFTPIIQFVLSAEGS--SQLAMF 395 (515)
T ss_pred HHHHhHHHHHHHHHHHHhcCCcchhhhhHhHhhccchHHHHHH--HHHHHHHHhhhhhhHHHHHHHHcCCCc--cchhHH
Confidence 3445666654333 357765433 3332 344444433 467788888999999999887644333 334445
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHH----HhhccCcccccccchhhhccC-----CCccH
Q 010427 107 CFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASS----ANVGSSATPIGNPQNLVIALQ-----SGISF 177 (511)
Q Consensus 107 ~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~a----an~Gg~~TpiG~p~Nliv~~~-----~~~~f 177 (511)
.+.-.++|+.-||+-+..+-+-=+..--++-.++...+ =-++.| .|+=|.+||=|...-+..... -++|+
T Consensus 396 y~aNGlLS~iSDNVFV~TVYI~E~k~A~~~G~Is~~qf-~~LAVAINTGTNlPSVATPNGQAAFLFLLTSalAPLirLSY 474 (515)
T PF06450_consen 396 YIANGLLSMISDNVFVATVYINEVKAALDAGVISREQF-DLLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSY 474 (515)
T ss_pred HHhhhhHHhhccceeEEEEeHhhHHHHHHcCCcCHHHH-hhHHhhhhcCCCCCcCcCCCchhHHHHHHHHhhHHHHHHhH
Confidence 67788999999998665443322222112223444332 234444 444466666555555544321 25788
Q ss_pred HHHHHhHHHHHHHHHHH
Q 010427 178 GKFLLGILPSMLVGVFV 194 (511)
Q Consensus 178 ~~f~~~~lp~~ii~l~~ 194 (511)
.+..++.+|..++--++
T Consensus 475 grMV~MAlPYTiVl~~v 491 (515)
T PF06450_consen 475 GRMVWMALPYTIVLTLV 491 (515)
T ss_pred hhHHhHhccHHHHHHHH
Confidence 88888888887654433
No 143
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=76.39 E-value=1.2e+02 Score=33.07 Aligned_cols=132 Identities=13% Similarity=0.075 Sum_probs=81.0
Q ss_pred HHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh--chHHHHHHHHHHHHH
Q 010427 356 PCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA--SNVPTVLLLGARVAA 433 (511)
Q Consensus 356 ~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i--sN~a~~~l~~P~i~~ 433 (511)
|.+++. |.-++.+.....++.-+.++|....++..+... +... -+++-+..++..|+ ||+..-+++.| ++.
T Consensus 373 ~t~k~~-~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~---G~~f--p~fSp~lGwiG~FltGS~T~sN~lFg~-lQ~ 445 (522)
T COG1620 373 ETLKEL-KLPILTIIFALAMAYLMNYSGLSKTLALALAHT---GEAF--PLFSPFLGWIGVFLTGSNTSSNLLFGP-LQQ 445 (522)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc---CCCc--hhHhHHHHHHhhhhcccchHHHHHHHH-HHH
Confidence 334444 566677788899999999999998888877543 1222 23444556666666 69999999999 788
Q ss_pred hhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHH
Q 010427 434 SAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITA 503 (511)
Q Consensus 434 ~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~i 503 (511)
..|++.|.|+. ....+-..++.+|++ =|+.|+.+.-...+. -|. =.|-+|.-++.++...+
T Consensus 446 ~~A~~iG~s~~-l~~AantvGg~~gkM---IspqsIa~acaavg~--~gk---Eg~l~r~tv~~sl~~~~ 506 (522)
T COG1620 446 TTAEQIGLSPV-LLVAANTVGGVMGKM---ISPQSIAAACAAVGL--VGK---EGDLLRKTVKPSLIYLI 506 (522)
T ss_pred HHHHHcCCCHH-HHHHHHhhhhhhccc---cCHHHHHHHHHHhcc--ccc---hhHHHHHHHHHHHHHHH
Confidence 88988888774 233333333444443 245565554322111 121 25666666666655544
No 144
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=73.92 E-value=56 Score=35.13 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHhhcchhhH-HHHHHHHHHHHHHHcCCCchHH
Q 010427 67 GLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLCRICFISALSSALFTNDTC-CVILTEFVLKIARQNGVSPHPF 144 (511)
Q Consensus 67 ~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~~~~~~~~~lS~flsN~~t-~~i~~Pi~~~ia~~~~~~p~~~ 144 (511)
-=++|||.- .++...++.+.+++.++..++ +...++ ..+-++++.-|+-.-+- =++=.|++++-++++|.++.+.
T Consensus 322 AGImGmm~~-sgl~g~sLa~~is~~fvsiat~~TfP~~--~flsagivn~FVPSGGGqWaVqgP~~~~Aa~~Lgv~~~~~ 398 (453)
T PF02667_consen 322 AGIMGMMTG-SGLGGVSLAQVISNFFVSIATPTTFPLF--TFLSAGIVNFFVPSGGGQWAVQGPIVMPAAQALGVDLGKT 398 (453)
T ss_pred HHHHHHHhh-cCCCcchHHHHHHHHHHHhcCCccHHHH--HHHHHHHheeEecCCCceEEEecchHHHHHHHhCCCHHHH
Confidence 345565542 334555588899998876654 233222 22333333333332222 2456799999999999999999
Q ss_pred HHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHHHHHHHHH
Q 010427 145 LLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPSMLVGVFV 194 (511)
Q Consensus 145 l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ii~l~~ 194 (511)
.|+.+++-...-+.-|.=.-| +.+-.|++..|.+-+.+...++..++
T Consensus 399 ~ma~a~Gda~tNmiQPFWaLP---lL~I~GL~aRDImGy~~~~ll~~~~i 445 (453)
T PF02667_consen 399 VMAYAWGDAWTNMIQPFWALP---LLGIAGLKARDIMGYCVVILLVSGII 445 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 999988876532222210000 01345789999988776655554443
No 145
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=63.78 E-value=43 Score=34.22 Aligned_cols=86 Identities=22% Similarity=0.196 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHH
Q 010427 66 LGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFL 145 (511)
Q Consensus 66 i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l 145 (511)
-+++.||-.+++++++.. -+++-+.+.+..+++..-++ ...++++++....++..+ +..++. .|.=+.+--
T Consensus 12 gl~l~Gl~~~~~~l~~~~-g~~~~~~l~~~t~~~~~a~l----~G~~~Tal~QSSsa~t~i---~i~lv~-~G~l~~~~a 82 (307)
T TIGR00704 12 AFLLWGMHIVRTGVMRVF-GARLRTVLSRSTEKKPLAFL----AGIGVTAIVQSSNATTVL---VISFVA-AGVLSLAPA 82 (307)
T ss_pred HHHHHHHHHHHHHHHHHh-hhHHHHHHHHHcCCcHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHH-CCCCCHHHH
Confidence 467888899999988773 35666666666666655443 333445555444444332 234443 455455667
Q ss_pred HHHHHHHhhccCccc
Q 010427 146 LALASSANVGSSATP 160 (511)
Q Consensus 146 ~~~a~aan~Gg~~Tp 160 (511)
+++.++||+|+..|.
T Consensus 83 l~iilGANiGTt~t~ 97 (307)
T TIGR00704 83 IVIILGANVGTTLTA 97 (307)
T ss_pred HHHHHHhhHHHHHHH
Confidence 999999999987654
No 146
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=54.65 E-value=67 Score=28.76 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhccccCcchhH
Q 010427 367 IFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA-SNVPTVLLLGARVAASAGAISESEEKK 445 (511)
Q Consensus 367 l~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i-sN~a~~~l~~P~i~~~~a~~~~~~~~~ 445 (511)
+++.|+-.+..++++.-. +.+.+.+....+ ++ +...++...+|.++ |.++++.+..+... .|.-+.+
T Consensus 1 L~l~gl~~l~~~l~~~~~-~~~~~~l~~~~~-~~----~~~~l~G~~~T~l~QSSsa~~~i~v~l~~------~g~l~~~ 68 (142)
T PF02690_consen 1 LFLFGLRLLSSGLKPLAG-PRLRALLARLTS-NP----LLAFLLGALLTALVQSSSAVTLIVVSLVA------AGVLSLE 68 (142)
T ss_pred CHhhHHHHHHHHHHHHHH-HHHHHHHHHHcC-CC----HHHHHHHHHHHHHhcchHHHHHHHHHHHH------hcccCHH
Confidence 367788889999988754 555565543332 11 22222334444444 66777777666332 1322334
Q ss_pred HHHHHHHHHhhhcChhhh
Q 010427 446 AWLILAWVSTVAGNLSLL 463 (511)
Q Consensus 446 ~~~~l~~~~~~gg~lTpi 463 (511)
.-+..++++++|...|+.
T Consensus 69 ~al~~ilGaNiGtt~~~~ 86 (142)
T PF02690_consen 69 QALAIILGANIGTTITAL 86 (142)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 567788888888766543
No 147
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=51.56 E-value=19 Score=36.95 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHH
Q 010427 68 LLFGTMVVSFYLERAGMFKYLEIVLS 93 (511)
Q Consensus 68 ~l~g~~~i~~~l~~tG~~~~ia~~l~ 93 (511)
-+.||++++..++|+|+.+++++...
T Consensus 214 pLig~Lm~Gnl~rEsgv~~rLs~taq 239 (360)
T PF03977_consen 214 PLIGMLMFGNLLRESGVVERLSKTAQ 239 (360)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 57899999999999999999987653
No 148
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=51.30 E-value=1.2e+02 Score=33.32 Aligned_cols=88 Identities=22% Similarity=0.148 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHcCCCchHHH
Q 010427 67 GLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTN-DTCCVILTEFVLKIARQNGVSPHPFL 145 (511)
Q Consensus 67 ~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN-~~t~~i~~Pi~~~ia~~~~~~p~~~l 145 (511)
+.+.|+=.++.+.+-..-.+.....+....+++...++ +.+.+++..+. .+++.++. +++.+ |+-.....
T Consensus 142 l~f~sl~l~~~a~~pl~~s~~~~~~i~~l~~~~~~~l~----~g~~lt~l~~SS~A~i~i~~----~l~~~-glis~~~~ 212 (533)
T COG1283 142 LIFLSLELLGQATEPLRQSPAFSDFIAKLSDDPIVALL----IGALLTALIQSSLAAIGILL----SLTSQ-GLISLEAA 212 (533)
T ss_pred HHHHHHHHHHHhhhhhhhchhHHHHHHHhccccHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHhC-cccchhHH
Confidence 34555555666666655555566665555555544433 34444444433 33444433 33333 34344667
Q ss_pred HHHHHHHhhccCcccccc
Q 010427 146 LALASSANVGSSATPIGN 163 (511)
Q Consensus 146 ~~~a~aan~Gg~~TpiG~ 163 (511)
+++.+++|+|+..|++..
T Consensus 213 ~alvLGaNlGt~i~a~la 230 (533)
T COG1283 213 LALVLGANLGTTITAVLA 230 (533)
T ss_pred HHHHHHHhhhchhHHHHH
Confidence 999999999999988653
No 149
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=47.79 E-value=27 Score=35.71 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHH
Q 010427 68 LLFGTMVVSFYLERAGMFKYLEIVL 92 (511)
Q Consensus 68 ~l~g~~~i~~~l~~tG~~~~ia~~l 92 (511)
-++||++++..++|+|+.+++++..
T Consensus 214 pLig~Lm~GnllrEsGv~~rl~~ta 238 (354)
T TIGR01109 214 PLVGMLMFGNLMRESGVVERLSKTA 238 (354)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 5789999999999999999998754
No 150
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=45.39 E-value=3.5e+02 Score=27.62 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=46.5
Q ss_pred cChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhcccc
Q 010427 361 VSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVA-SNVPTVLLLGARVAASAGAIS 439 (511)
Q Consensus 361 idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~i-sN~a~~~l~~P~i~~~~a~~~ 439 (511)
+=-..=++|.|+-.+..+++-..-.+...+.+.... .+ .+...++..++|.++ |..+++.+..+.. +.
T Consensus 132 ~l~G~gllf~gl~~m~~~~~pl~~~~~~~~~~~~l~-~~----~~~~~l~G~~lT~ivQSSsA~i~i~~~la-----~~- 200 (307)
T TIGR00704 132 SGIGLGLIFLALELISQLVTPLTQANGVQVIFASLT-GS----ILLDLLIGAVLTIISHSSSAAVLITATLT-----AA- 200 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhc-cC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HC-
Confidence 334455666777777776554432233333332221 11 122233445566655 4555555555422 22
Q ss_pred CcchhHHHHHHHHHHhhhcChhhh
Q 010427 440 ESEEKKAWLILAWVSTVAGNLSLL 463 (511)
Q Consensus 440 ~~~~~~~~~~l~~~~~~gg~lTpi 463 (511)
|.-+.+.-..+++++++|...|++
T Consensus 201 G~i~~~~a~~lvlGaNiGT~~ta~ 224 (307)
T TIGR00704 201 GIIGFPVALCLVLGSNLGSGILAM 224 (307)
T ss_pred CCCCHHHHHHHHHhcchhHHHHHH
Confidence 333334567788888888877643
No 151
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=45.19 E-value=3.5e+02 Score=27.52 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=82.5
Q ss_pred HHhCChhHHH-HHHHHHHHHHHHHHhcHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH-
Q 010427 58 FAAIDLSVLG-LLFGTMVVSFYLERAGMFKYLEIVLSWRSR--GAKDLLCRICFISALSSALFTNDTCCVILTEFVLKI- 133 (511)
Q Consensus 58 ~~~~~~~~i~-~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~--~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~i- 133 (511)
.+.++|..++ =+ +-.++..+.+.|+-+.+++.+...-. +...-...-|+-=+++++.+-|--++.-.+-.-+.+
T Consensus 157 l~~vG~a~iLPQl--LAaLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAAF~ViTaGIGiP 234 (308)
T PF06166_consen 157 LDQVGWAAILPQL--LAALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAAFPVITAGIGIP 234 (308)
T ss_pred HHHhhHHHHHHHH--HHHHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHHhHHHHhccCce
Confidence 3557777654 12 22466778999999999998765543 334444455665667889999977665443332222
Q ss_pred --HHHcCCCchHHHHHHHHHHhhccCcccccccchhhhcc----CCCccHHHHHHhHHHHHHHHHHHHHHHHH
Q 010427 134 --ARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIAL----QSGISFGKFLLGILPSMLVGVFVNTLILL 200 (511)
Q Consensus 134 --a~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~----~~~~~f~~f~~~~lp~~ii~l~~~~~~~~ 200 (511)
-+++|-||...-----++.-||-.+||...--|++=.. ..++. -+|.=.|..++-+++.+++++
T Consensus 235 fvi~~~GgnPaivgAlgM~aGyCGTLmTPMAANFNiVPaALLElkDk~g---VIKaQ~p~Al~llvv~I~LMy 304 (308)
T PF06166_consen 235 FVIAQFGGNPAIVGALGMTAGYCGTLMTPMAANFNIVPAALLELKDKYG---VIKAQAPTALVLLVVNIVLMY 304 (308)
T ss_pred EEEecCCCCHHHHHHHHHhhcchhcccChhhhhcCcchHHHhcCCcccc---chhhhhHHHHHHHHHHHHHHH
Confidence 24557787554333336667888999998777765431 22222 234445666655555544443
No 152
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=44.55 E-value=32 Score=35.79 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHH
Q 010427 68 LLFGTMVVSFYLERAGMFKYLEIVL 92 (511)
Q Consensus 68 ~l~g~~~i~~~l~~tG~~~~ia~~l 92 (511)
-+.||++++..++|+|+ +++++..
T Consensus 252 pLig~Lm~GNllrEsGv-~rLs~ta 275 (399)
T TIGR03136 252 PLILSFFLGVAIKEAQI-EPYQNLL 275 (399)
T ss_pred HHHHHHHHHHHHHHhCc-HHHHHHH
Confidence 46899999999999999 9998764
No 153
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=41.80 E-value=1.8e+02 Score=30.00 Aligned_cols=149 Identities=22% Similarity=0.240 Sum_probs=82.4
Q ss_pred HHHHHHHHHHH----HHhcCCChH---HHHHh-CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHH
Q 010427 36 TAGALLGAMLM----IIFKVITPE---EAFAA-IDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRIC 107 (511)
Q Consensus 36 ~~~al~~~~~l----~~~g~~~~~---~a~~~-~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~ 107 (511)
..+.++|.... .++|+.+-. ++++. .+...+..+ -|.+++-+.+..++.-+-+...... +...+..+.
T Consensus 321 A~VGliGLsvIilaTsftGvt~EH~iGkAFqEsLPFTALL~V--FFsvVAVIidQ~LF~PiIqfVL~a~--~~~Ql~lfy 396 (516)
T COG3067 321 AEVGLIGLSVIILATSFTGVTDEHAIGKAFQESLPFTALLTV--FFSVVAVIIDQHLFSPIIQFVLQAS--EHAQLSLFY 396 (516)
T ss_pred HHHhhhhhHHHHHHHhhcCCcchhhhHHHHHhcCcHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHcCC--cccchhHHH
Confidence 34455555333 356777643 34432 455554444 3566677777778888888765443 334445567
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHh----hccCcccccccchhhhccC-----CCccH
Q 010427 108 FISALSSALFTNDTCCVILTEFVLKIARQNG-VSPHPFLLALASSAN----VGSSATPIGNPQNLVIALQ-----SGISF 177 (511)
Q Consensus 108 ~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~-~~p~~~l~~~a~aan----~Gg~~TpiG~p~Nliv~~~-----~~~~f 177 (511)
+.-..+|+.-||+-+..+-+-=+. -+-+.| +++..+ =.++.+-| +-|..||=|...-+..... -++|+
T Consensus 397 ifNGLLS~iSDNVFV~TvYInE~k-~Al~~G~is~~qf-elLaVAINTGTNLPSVATPNGQAAFLFLLTSalaPLiRLSY 474 (516)
T COG3067 397 IFNGLLSSISDNVFVGTIYINEAK-AALEAGAISLKQF-ELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSY 474 (516)
T ss_pred HHhhHHHhhccceEEEEEEehhHH-HHHHcCCcCHHhh-hHhhehhhcCCCCCcccCCCchhhHHHHHHhhhhHHHhhhh
Confidence 778899999999865443322221 123344 343332 33444444 4456666555555544321 24666
Q ss_pred HHHHHhHHHHHHH
Q 010427 178 GKFLLGILPSMLV 190 (511)
Q Consensus 178 ~~f~~~~lp~~ii 190 (511)
+....+.+|..++
T Consensus 475 GRMV~MAlPYTlv 487 (516)
T COG3067 475 GRMVWMALPYTLV 487 (516)
T ss_pred cceeeeeccHHHH
Confidence 6666666776654
No 154
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=40.78 E-value=2.9e+02 Score=30.51 Aligned_cols=91 Identities=8% Similarity=0.059 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhccccCc
Q 010427 363 YSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVAS-NVPTVLLLGARVAASAGAISES 441 (511)
Q Consensus 363 w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~is-N~a~~~l~~P~i~~~~a~~~~~ 441 (511)
...-++|.|+=.++.+.+-..-.+...+.+....+ .+ ....++.+++|.+.+ ..+++.++.-. +...-.
T Consensus 138 ~GiGl~f~sl~l~~~a~~pl~~s~~~~~~i~~l~~---~~--~~~l~~g~~lt~l~~SS~A~i~i~~~l-----~~~gli 207 (533)
T COG1283 138 FGIGLIFLSLELLGQATEPLRQSPAFSDFIAKLSD---DP--IVALLIGALLTALIQSSLAAIGILLSL-----TSQGLI 207 (533)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHhcc---cc--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCccc
Confidence 34444555555566666666666666666544322 11 222234555555443 44555544331 112233
Q ss_pred chhHHHHHHHHHHhhhcChhhhh
Q 010427 442 EEKKAWLILAWVSTVAGNLSLLG 464 (511)
Q Consensus 442 ~~~~~~~~l~~~~~~gg~lTpiG 464 (511)
+. ..-..++.++++|+-.|++.
T Consensus 208 s~-~~~~alvLGaNlGt~i~a~l 229 (533)
T COG1283 208 SL-EAALALVLGANLGTTITAVL 229 (533)
T ss_pred ch-hHHHHHHHHHhhhchhHHHH
Confidence 44 46677888899999888665
No 155
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=39.77 E-value=39 Score=35.21 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHH
Q 010427 68 LLFGTMVVSFYLERAGMFKYLEIVL 92 (511)
Q Consensus 68 ~l~g~~~i~~~l~~tG~~~~ia~~l 92 (511)
-+.||++++..++|+|+.+++++..
T Consensus 285 PLiGmlmfGNllrEsGVv~rLs~ta 309 (433)
T PRK15475 285 PLLGMFCFGNLMRESGVVERLSDTV 309 (433)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4689999999999999999998764
No 156
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=39.72 E-value=3.6e+02 Score=26.06 Aligned_cols=177 Identities=14% Similarity=0.155 Sum_probs=90.6
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHhccCChHHHHhh-----cChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhccc
Q 010427 326 LIALLMGLNMSWTALTAALVLVVLDFKDAMPCLDK-----VSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINR 400 (511)
Q Consensus 326 l~~~~~~l~~~~~al~~a~~l~~~~~~~~~~~~~~-----idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~ 400 (511)
++++...+++-.+.+++++.--+....+..|.++. +|-+.+-+|.=.+++.+-+|+-|+=+...+.+.+..+. .
T Consensus 11 vvGFalk~d~ilVV~vAgivTgLvaG~~~~~iL~~lG~aFv~nR~mslf~l~LPvIGllER~GLke~A~~lI~kik~a-T 89 (218)
T PF06149_consen 11 VVGFALKLDPILVVLVAGIVTGLVAGMSFVEILETLGKAFVDNRYMSLFILTLPVIGLLERYGLKERAANLIGKIKGA-T 89 (218)
T ss_pred HhhHHHhccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-c
Confidence 34455555554444444444444444555444321 55565656666699999999999999988888766442 1
Q ss_pred chhHHHHHHHHHHHHHhhch-----HHHH--HHHHHHHHHhhcccc-C-cchhH--HHHHHHHHH-hhhcC---hhhhhh
Q 010427 401 VGGISILAIIILVLSNVASN-----VPTV--LLLGARVAASAGAIS-E-SEEKK--AWLILAWVS-TVAGN---LSLLGS 465 (511)
Q Consensus 401 ~~~~~~l~~~~~ilS~~isN-----~a~~--~l~~P~i~~~~a~~~-~-~~~~~--~~~~l~~~~-~~gg~---lTpiGs 465 (511)
.+.....+.+.=-++...+= .|-. -+..| .+..++... + .++.. ..-..+... +.|-| -.=+|+
T Consensus 90 ~Gril~~Yl~iR~i~aa~gl~~lGGh~QfVRPLi~P-MaeaAae~~~g~l~e~~~e~ika~aAA~eN~gnFFgqniFva~ 168 (218)
T PF06149_consen 90 AGRILSVYLLIREIAAAFGLTRLGGHAQFVRPLIAP-MAEAAAEAKYGELSEKDREKIKAMAAAAENYGNFFGQNIFVAA 168 (218)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCccccchhhh-HHHHHHhhccCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 22233333211112222221 1110 13345 333333321 1 12111 111122111 12211 112344
Q ss_pred hhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHH
Q 010427 466 AANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLA 507 (511)
Q Consensus 466 ~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~ 507 (511)
..-++..+..+. -||+++-.|-.++++|..++.+++...
T Consensus 169 ~gvLLi~gtl~~---~G~~v~~~~ia~~~IP~Ai~a~ii~~~ 207 (218)
T PF06149_consen 169 GGVLLIQGTLKE---LGYEVEPLHIALWAIPTAIIAFIIHGI 207 (218)
T ss_pred cceeeeeeeHHh---cCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555443 599999999999999999999887754
No 157
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=39.28 E-value=40 Score=35.10 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHH
Q 010427 68 LLFGTMVVSFYLERAGMFKYLEIVL 92 (511)
Q Consensus 68 ~l~g~~~i~~~l~~tG~~~~ia~~l 92 (511)
-+.||++++..++|+|+.+++++..
T Consensus 285 PLiGmlmfGNllrEsGVv~rLs~ta 309 (433)
T PRK15477 285 PLLGMFCFGNLMRESGVVERLSDTV 309 (433)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4689999999999999999998764
No 158
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=39.17 E-value=40 Score=35.08 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHH
Q 010427 68 LLFGTMVVSFYLERAGMFKYLEIVL 92 (511)
Q Consensus 68 ~l~g~~~i~~~l~~tG~~~~ia~~l 92 (511)
-+.||++++..++|+|+.+++++..
T Consensus 285 PLiGmlmfGNllrEsGVv~rLs~ta 309 (433)
T PRK15476 285 PLLGMFCFGNLMRESGVVERLSDTV 309 (433)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4689999999999999999998764
No 159
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=38.47 E-value=2.3e+02 Score=23.41 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHhCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHh
Q 010427 39 ALLGAMLMIIFKVITPEEAFAAID------LSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWR 95 (511)
Q Consensus 39 al~~~~~l~~~g~~~~~~a~~~~~------~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~ 95 (511)
-+.++..--+.+-++.+|..+.|. -++-+--+.+=.+..++.+||+.+++++++.+.
T Consensus 24 lliaalvgGl~~Gl~l~~t~~~~~~Gmgg~a~~ALSY~lLGafA~aIs~sGl~~~L~~~i~~~ 86 (88)
T PF13726_consen 24 LLIAALVGGLVGGLGLGETMSAFIDGMGGNAETALSYILLGAFAVAISKSGLTDILAKKIIKK 86 (88)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 344444445667788887665542 345554455556677899999999999998754
No 160
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=36.75 E-value=67 Score=32.28 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=62.5
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHH-HHHHhhcchhhHHHHHHHHHHHH
Q 010427 55 EEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFIS-ALSSALFTNDTCCVILTEFVLKI 133 (511)
Q Consensus 55 ~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~-~~lS~flsN~~t~~i~~Pi~~~i 133 (511)
+|+.+-.-.+.+-|++-.-++...+..||+-|++|+.+...+++.+.++.+-.+.+ -++|.|+---++.+=.+-..+..
T Consensus 179 RdtidtvlktIlPFMAFVs~LIGiI~~sGiGd~iA~~l~PLAg~~~GLv~l~~ICs~PfLSP~LGPGAVIaQVIGvLiGv 258 (331)
T TIGR00825 179 RDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLVPLAGNPIGLVILALICSFPLLSPFLGPGAVIAQVIGVLIGV 258 (331)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccHHHHHHhhccccccChHHHHHHHHHHcchhcccccCCceehhhhhhhheeh
Confidence 34444444556667777777778899999999999999888888876665433322 24788888777665333222222
Q ss_pred HHHcC-CCchHHHHHHHHHHhh
Q 010427 134 ARQNG-VSPHPFLLALASSANV 154 (511)
Q Consensus 134 a~~~~-~~p~~~l~~~a~aan~ 154 (511)
--..| ++| .+-+|--||-|.
T Consensus 259 qIg~G~Ipp-~lALPALFAIN~ 279 (331)
T TIGR00825 259 QIGKGTIPP-HLALPALFAINA 279 (331)
T ss_pred eecCCCCCh-hhhhhHHHhhcc
Confidence 11223 444 556777777664
No 161
>COG3817 Predicted membrane protein [Function unknown]
Probab=34.49 E-value=4.8e+02 Score=25.99 Aligned_cols=139 Identities=11% Similarity=0.110 Sum_probs=74.5
Q ss_pred hHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccch-hHHHHHHHHHHHHHhhchHHHHH------H
Q 010427 354 AMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVG-GISILAIIILVLSNVASNVPTVL------L 426 (511)
Q Consensus 354 ~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~-~~~~l~~~~~ilS~~isN~a~~~------l 426 (511)
.++..++++|.-++==. +-.++.-+...|..|.+++.+..+.+.|... .+..-.+-.++.|-+|.|.=++- +
T Consensus 157 ~~rl~d~v~wa~iLPQ~-LaaLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMalfTmiMGNaFAAFpViTagI 235 (313)
T COG3817 157 ARRLMDQVSWAAILPQM-LAALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMALFTMIMGNAFAAFPVITAGI 235 (313)
T ss_pred HHHHHHHhhHHHHHHHH-HHHHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHcccchhceeeeccc
Confidence 46777889998775321 2224455677899999999887665543321 11111223346778888863332 2
Q ss_pred HHHHHHHhhccccCcchhHHHHHHHHHHhhhc-ChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHH
Q 010427 427 LGARVAASAGAISESEEKKAWLILAWVSTVAG-NLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIG 505 (511)
Q Consensus 427 ~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg-~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~ 505 (511)
-.|+.. -+.|.||.. .-.+.+.+..|| -+||++.-=|.+=....|-. ..+. -.|-=.|..++.+++-
T Consensus 236 gvPilv----~q~ganPaV-~~AigM~sGfCGTLlTPMAANFN~vPAALlel~--Dkna-----VIKaQ~ptalvlli~n 303 (313)
T COG3817 236 GVPILV----GQLGANPAV-AGAIGMLSGFCGTLLTPMAANFNIVPAALLELK--DKNA-----VIKAQAPTALVLLIAN 303 (313)
T ss_pred ccceee----eccCCChHH-HHHHHHHhhhhhhccChhhhhcCcchHHHhCCc--cccc-----eeeeccchhhHHHHHH
Confidence 234211 123555532 223444456666 58999987777655444432 1221 1244555555555443
No 162
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=33.31 E-value=6.6e+02 Score=27.29 Aligned_cols=121 Identities=18% Similarity=0.199 Sum_probs=79.1
Q ss_pred HHHHHHhcHHHHHHHHHH---Hhcc-CchhHHHHHHHHHHHHHhhcchhhH-HHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 010427 76 SFYLERAGMFKYLEIVLS---WRSR-GAKDLLCRICFISALSSALFTNDTC-CVILTEFVLKIARQNGVSPHPFLLALAS 150 (511)
Q Consensus 76 ~~~l~~tG~~~~ia~~l~---~~~~-~~~~ll~~~~~~~~~lS~flsN~~t-~~i~~Pi~~~ia~~~~~~p~~~l~~~a~ 150 (511)
.+.++.|++-.++|.+-. +..+ +...+++.+.++++++-.|+..--+ =.++.||...+--..|.+|.-- -.+
T Consensus 364 va~FnwSn~G~~~AV~GA~~L~~~gl~g~~lil~~illsa~inL~IgSASAkWailaPIfVPMlMllGysPe~t--Qaa- 440 (516)
T COG2978 364 VAFFNWSNLGTIMAVKGADFLKAIGLTGLPLILGFILLSAFINLFIGSASAKWAILAPIFVPMLMLLGYSPEFT--QAA- 440 (516)
T ss_pred HHHhcccccchhheechHhHHHHcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhcCCHHHH--HHH-
Confidence 466788998888885432 2222 3456777788888888877765444 4789999999988899988542 222
Q ss_pred HHhhccCcccccccchhhh----c--c--CCCccHHHHHHhHHHHHHHHHHHHHHHHH
Q 010427 151 SANVGSSATPIGNPQNLVI----A--L--QSGISFGKFLLGILPSMLVGVFVNTLILL 200 (511)
Q Consensus 151 aan~Gg~~TpiG~p~Nliv----~--~--~~~~~f~~f~~~~lp~~ii~l~~~~~~~~ 200 (511)
=-+|-..|-+=+|-+-+. . . ..+.+.+.++..++|.++.-++...+++.
T Consensus 441 -yRigDS~tniiTPlm~yfpLil~~~~kY~k~~GvGTL~s~mLPYsi~f~i~w~~l~~ 497 (516)
T COG2978 441 -YRIGDSVTNIITPLMPYFPLILAYAQKYDKDAGVGTLMSMMLPYSIAFLIAWTLLLL 497 (516)
T ss_pred -HHhcccccccccchhhhHHHHHHHHHHhCcCccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 224555554445544322 1 1 23478899999999998877776655443
No 163
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=25.18 E-value=1.3e+02 Score=30.39 Aligned_cols=67 Identities=21% Similarity=0.156 Sum_probs=44.1
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHH--HHHHhhchHHH
Q 010427 355 MPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIIL--VLSNVASNVPT 423 (511)
Q Consensus 355 ~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~--ilS~~isN~a~ 423 (511)
||..+-+=-.++-|.+..-.+.+-+..||+.+|+|+.+.++++. ..++.++++++. +||-+..--|+
T Consensus 179 RdtidtvlktIlPFMAFVs~LIGiI~~sGiGd~iA~~l~PLAg~--~~GLv~l~~ICs~PfLSP~LGPGAV 247 (331)
T TIGR00825 179 RDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLVPLAGN--PIGLVILALICSFPLLSPFLGPGAV 247 (331)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccHHHHHHhhccccccC--hHHHHHHHHHHcchhcccccCCcee
Confidence 35554444466777777777888889999999999999888652 234445555544 46655554443
No 164
>COG0700 SpmB Uncharacterized membrane protein [Function unknown]
Probab=24.63 E-value=4e+02 Score=24.31 Aligned_cols=126 Identities=10% Similarity=0.149 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccccCcch
Q 010427 364 SLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINRVGGISILAIIILVLSNVASNVPTVLLLGARVAASAGAISESEE 443 (511)
Q Consensus 364 ~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~~~~ilS~~isN~a~~~l~~P~i~~~~a~~~~~~~ 443 (511)
+++-.+..+++...+++.+|..|++.+.+++....-..++- .+...+-..+|-..+.-++.-++. ...+
T Consensus 33 ~i~P~lv~~lv~i~~fr~sGald~v~~~l~pv~s~~G~p~E----a~pv~l~~p~Sg~gA~Gv~~dl~~-------~~g~ 101 (162)
T COG0700 33 TILPYLVAMLVIIAAFRISGALDWVGHILSPVMSLIGLPGE----AAPVALAKPMSGGGAVGVAADLAT-------TYGL 101 (162)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHcCCChh----hhHHHHHhhccCccHHHHHHHHHH-------hcCC
Q ss_pred hHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhHHHHHHHHHHHHHhc
Q 010427 444 KKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLPSTIVITAIGLALIR 510 (511)
Q Consensus 444 ~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~plt~l~~iv~~~~i~ 510 (511)
+ .+.........++.-|+.=..+ ..+| +=|.| +-+++++.|+-..++..+.+++..+
T Consensus 102 d-s~~~~vaa~~~gstettfyvl~--vyfG------~vgik-~~~~al~~~l~advig~i~ai~V~~ 158 (162)
T COG0700 102 D-SFIGTVAAPAQGSTETTFYVLG--VYFG------AVGIK-KIRKALPVGLTADVIGAIAAIWVMQ 158 (162)
T ss_pred c-chhHHHHHHHhcccCCeEEEEE--EEEe------hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
No 165
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=23.69 E-value=5.4e+02 Score=23.13 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=36.9
Q ss_pred CCCCcchhHHHHHHHHH-HHHHHHHhhcCCCccchhHHHHHHHHHHHHHhcCCChHHHHHh
Q 010427 1 MALAPTENVVLGSFAFV-IFWILAVFPAVPFLPIGRTAGALLGAMLMIIFKVITPEEAFAA 60 (511)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~ 60 (511)
|+.....|....+.++. ..++.......-.+|++-++++++-..+++.++.+++++.-+.
T Consensus 1 ~~~~~~~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~~~~vk~~~v~~~ 61 (141)
T PRK04125 1 MSAKKVYSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLCTKVVKLEQVESL 61 (141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHH
Confidence 44455556666554443 3444444433445677777777777777788899988775544
No 166
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=23.47 E-value=9.8e+02 Score=26.05 Aligned_cols=93 Identities=23% Similarity=0.178 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCc
Q 010427 62 DLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSRGAKDLLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSP 141 (511)
Q Consensus 62 ~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~~~~~ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p 141 (511)
+++-+.++...|.=...-|++|+++.+-+++.++ .+++++.-.+++.+++|...+. +.-+++.|+.--+-.+.|.-|
T Consensus 88 ~FpPLG~VLv~mLGigvAE~SGll~alm~~~~~~--~pk~llt~~vvfigi~s~~asD-aayVVlpPlaAmiF~a~GRHP 164 (516)
T COG2978 88 GFPPLGTVLVVMLGIGVAERSGLLSALMRKLLNK--VPKRLLTFTVVFIGILSHIASD-AAYVVLPPLAAMIFIALGRHP 164 (516)
T ss_pred CCCchHHHHHHHHhhhhhhhcccHHHHHHHHHhh--cchHHHhhHHHHHHHHHHHHhh-cceeEecchHHHHHHHhCCCc
Confidence 3555555555554345569999999888877533 4677777777777777776654 444566788877778888877
Q ss_pred hHHHHHHHHHHhhccCc
Q 010427 142 HPFLLALASSANVGSSA 158 (511)
Q Consensus 142 ~~~l~~~a~aan~Gg~~ 158 (511)
..-+..+||+-.||+.
T Consensus 165 -lAGlaaafAgvsgGfs 180 (516)
T COG2978 165 -LAGLAAAFAGVSGGFS 180 (516)
T ss_pred -HHHHHHHHhhcccccc
Confidence 4457778888766554
Done!