Query 010427
Match_columns 511
No_of_seqs 194 out of 1632
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f35_D Transporter, NADC famil 100.0 8.2E-50 2.8E-54 425.1 35.5 385 28-508 48-443 (449)
2 4f35_D Transporter, NADC famil 99.9 3.2E-21 1.1E-25 204.8 19.9 167 30-197 274-442 (449)
3 3tds_E Formate/nitrite transpo 18.0 6.2E+02 0.021 23.9 14.3 39 47-85 97-135 (268)
4 2j5d_A BNIP3 TM, BCL2/adenovir 17.4 2.5E+02 0.0086 19.1 4.9 34 172-205 8-41 (45)
5 3arc_I Photosystem II reaction 6.4 3.2E+02 0.011 17.8 2.2 16 106-121 13-28 (38)
6 2l16_A SEC-independent protein 4.3 7.7E+02 0.026 18.6 3.6 22 338-359 10-31 (78)
7 1m56_D Cytochrome C oxidase; m 3.6 5.6E+02 0.019 17.8 2.1 17 486-502 27-43 (51)
8 3jxo_A TRKA-N domain protein; 3.0 2.6E+02 0.009 20.7 -0.2 15 251-265 60-74 (86)
9 1qle_D Cytochrome AA3, ccytoch 2.8 7.2E+02 0.025 16.6 1.9 15 486-500 19-33 (43)
10 2knc_B Integrin beta-3; transm 2.7 1.5E+03 0.052 16.8 3.9 9 199-207 27-35 (79)
No 1
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=100.00 E-value=8.2e-50 Score=425.12 Aligned_cols=385 Identities=19% Similarity=0.200 Sum_probs=292.5
Q ss_pred CCCccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhcc-CchhHHHHH
Q 010427 28 VPFLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRSR-GAKDLLCRI 106 (511)
Q Consensus 28 ~~~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~~-~~~~ll~~~ 106 (511)
.+.+|.. ++++++.+++.++|+.+++|++++++++++++++|+|+++.+++|||+.+|+|.++.++.+ +++++++.+
T Consensus 48 te~iP~~--vtall~~~l~~l~gv~~~~~a~~~~~~~~i~li~g~~~la~al~~tGl~~riA~~il~~~g~~~~~l~~~~ 125 (449)
T 4f35_D 48 TEALHVT--VTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAVFML 125 (449)
T ss_dssp TTSSCSH--HHHHHHHHHHHHTTSSCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCSCTHHHHHHH
T ss_pred hccccHH--HHHHHHHHHHHHHCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4556775 6699999999999999999999999999999999999999999999999999999887765 578888899
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHH
Q 010427 107 CFISALSSALFTNDTCCVILTEFVLKIARQNGVSPH-----PFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFL 181 (511)
Q Consensus 107 ~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~-----~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~ 181 (511)
+..++++|+|+||+++++++.|++.+++++.+.+|. ++++++++++|+||+.||+|+|+|++..+..+++|.||+
T Consensus 126 ~~~~~~lS~~isn~a~~~~~~Pi~~~i~~~~~~~~~~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~~~~~~f~~~~ 205 (449)
T 4f35_D 126 FGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWM 205 (449)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHHHSCSCCCSSCCSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHhchHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhhcccCcCCCcccccccccccHHHhh
Confidence 999999999999999999999999999999988774 589999999999999999999999999888899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCCCCCCCcCCCcccccccccccccCCcccccccccCcccccC
Q 010427 182 LGILPSMLVGVFVNTLILLCMYWRILSVKKDEESAFAEDDDTSPHCFSPMCMSSINVNDSKCGNSKRRRSLSENDLCNLS 261 (511)
Q Consensus 182 ~~~lp~~ii~l~~~~~~~~~~~~~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~d~l~~~ 261 (511)
..++|..++.+++...++++++++..+ +.+ |. +++
T Consensus 206 ~~~~p~~li~l~~~~~~l~~~~~~~~~---~~~-----~~------------------~~~------------------- 240 (449)
T 4f35_D 206 KFGLPTAMMMLPMAIAILYFLLKPTLN---GMF-----EL------------------DRA------------------- 240 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred hhcCchHHHHHHHHHHHHHHHhccccc---ccc-----hh------------------hcc-------------------
Confidence 999999888766643333222221110 000 00 000
Q ss_pred CCcccccccchhhhhHHHHHHHhhccccccCCcccccccccCCcccchhhHHHHHHH-HHHHHHHHHHHHh-CC--cHHH
Q 010427 262 GGEFESTQNSVASKDQAAEIIVARGDIELGVSPKLAEGKKDNTQKWDWKRVSWKTCT-YLVILGMLIALLM-GL--NMSW 337 (511)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~l~~~~~-~l--~~~~ 337 (511)
+.+.++.+.+........ .+......+.... +. ....
T Consensus 241 ---------------------------------------~~~~~~~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~ 281 (449)
T 4f35_D 241 ---------------------------------------PVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTL 281 (449)
T ss_dssp ----------------------------------------CCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHH
T ss_pred ---------------------------------------chhhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhHH
Confidence 000000001111001111 1111111111112 22 3345
Q ss_pred HHHHHHHHHHHhccCChHHHHhhcChhHHHHHHHHHHHHHHHHhhChHHHHHHHhhhhhhccc-chhHHHHHHHHHHHHH
Q 010427 338 TALTAALVLVVLDFKDAMPCLDKVSYSLLIFFCGMFITVEGFNKTGIPSTLWTLMEPHARINR-VGGISILAIIILVLSN 416 (511)
Q Consensus 338 ~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~-~~~~~~l~~~~~ilS~ 416 (511)
+++.++.++...++.+.+|+++++||+++++|+|++.+++++++||+.+++++.+.+..+..+ ......+..++.++|+
T Consensus 282 val~~~~ll~~~~~l~~~~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~ 361 (449)
T 4f35_D 282 VALGAILMLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTE 361 (449)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETE
T ss_pred HHHHHHHHhhhhhccchhhhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence 667777777788999999999999999999999999999999999999999999876543211 1122233345566899
Q ss_pred hhchHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHHhhhcChhhhhhhhHHHHHhhhhccCCCCceeecchhhhhhhH
Q 010427 417 VASNVPTVLLLGARVAASAGAISESEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRSKPSGYTLSFWTHLKFGLP 496 (511)
Q Consensus 417 ~isN~a~~~l~~P~i~~~~a~~~~~~~~~~~~~l~~~~~~gg~lTpiGs~aNliv~~~~~~~~~ggy~i~f~df~k~G~p 496 (511)
|+||+|+++++.|++ ...++..|.+|. .+.+.+..+++++++||+||++|.++++. |+| +++||+|.|+|
T Consensus 362 f~sn~a~~~~l~Pi~-~~~a~~~g~~p~-~~~~~~~~~~s~~~~~p~~t~~n~i~~g~------g~~--~~~d~~k~G~~ 431 (449)
T 4f35_D 362 FASNTASAALLIPVF-ATVAEAFGMSPV-LLSVLIAVAASCAFMLPVATPPNAIVFAS------GHI--KQSEMMRVGLY 431 (449)
T ss_dssp ECCHHHHHHHHHHHH-HHHHHHTTCCSH-HHHHHHHHHHHCCCSSSSSSHHHHHHCSS------GGG--GTHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH-HHHHHHcCCCHH-HHHHHHHHHHHHHhHhhhhhHHHHHHHhc------CCC--CHHHHHHHHHH
Confidence 999999999999954 567777788885 66777777888899999999999999983 555 59999999999
Q ss_pred HHHHHHHHHHHH
Q 010427 497 STIVITAIGLAL 508 (511)
Q Consensus 497 lt~l~~iv~~~~ 508 (511)
++++.+++...+
T Consensus 432 ~~~~~~~v~~~~ 443 (449)
T 4f35_D 432 LNIACIGLLTAI 443 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988776554
No 2
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=99.87 E-value=3.2e-21 Score=204.76 Aligned_cols=167 Identities=19% Similarity=0.166 Sum_probs=148.8
Q ss_pred CccchhHHHHHHHHHHHHHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhc-c-CchhHHHHHH
Q 010427 30 FLPIGRTAGALLGAMLMIIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMFKYLEIVLSWRS-R-GAKDLLCRIC 107 (511)
Q Consensus 30 ~~~i~~~~~al~~~~~l~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~~l~~~~-~-~~~~ll~~~~ 107 (511)
..+...+.+++.++.++..+|+++++|+.++++|+++++++|++.++.+++++|+.+++++.+.... + +....+..++
T Consensus 274 ~~~~~~~~val~~~~ll~~~~~l~~~~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~ 353 (449)
T 4f35_D 274 GFKSFDTLVALGAILMLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVA 353 (449)
T ss_dssp CCSSHHHHHHHHHHHHHHHTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccchhHHHHHHHHHHhhhhhccchhhhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHH
Confidence 3344456778888888899999999999999999999999999999999999999999999887543 3 3455666677
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccccchhhhccCCCccHHHHHHhHHHH
Q 010427 108 FISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGNPQNLVIALQSGISFGKFLLGILPS 187 (511)
Q Consensus 108 ~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~ 187 (511)
.++.++|.|+||++++.++.|++.++|++.|.+|.++.+++++++++ +++||+|+|+|.++++.+++++.||+|.|+|.
T Consensus 354 ~~~~~ls~f~sn~a~~~~l~Pi~~~~a~~~g~~p~~~~~~~~~~~s~-~~~~p~~t~~n~i~~g~g~~~~~d~~k~G~~~ 432 (449)
T 4f35_D 354 TFVVFLTEFASNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASC-AFMLPVATPPNAIVFASGHIKQSEMMRVGLYL 432 (449)
T ss_dssp HTTSEETEECCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHC-CCSSSSSSHHHHHHCSSGGGGTHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhHhhhhhHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999997 68999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 010427 188 MLVGVFVNTL 197 (511)
Q Consensus 188 ~ii~l~~~~~ 197 (511)
.++++++...
T Consensus 433 ~~~~~~v~~~ 442 (449)
T 4f35_D 433 NIACIGLLTA 442 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877544
No 3
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=17.98 E-value=6.2e+02 Score=23.87 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=28.5
Q ss_pred HHhcCCChHHHHHhCChhHHHHHHHHHHHHHHHHHhcHH
Q 010427 47 IIFKVITPEEAFAAIDLSVLGLLFGTMVVSFYLERAGMF 85 (511)
Q Consensus 47 ~~~g~~~~~~a~~~~~~~~i~~l~g~~~i~~~l~~tG~~ 85 (511)
++-+.++..+.++...+..+.=+.|.+.++..+..+|.+
T Consensus 97 ~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~ 135 (268)
T 3tds_E 97 MLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLV 135 (268)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 455677888888777777777777777777777777765
No 4
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=17.37 E-value=2.5e+02 Score=19.07 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010427 172 QSGISFGKFLLGILPSMLVGVFVNTLILLCMYWR 205 (511)
Q Consensus 172 ~~~~~f~~f~~~~lp~~ii~l~~~~~~~~~~~~~ 205 (511)
.+++-..||.+..+|..+..=++.+.+-..+.+|
T Consensus 8 kggi~sa~flk~~~psll~shiL~~GlgIyIGkR 41 (45)
T 2j5d_A 8 KGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRR 41 (45)
T ss_dssp CCSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeeehHHHHHHhhHHHHHHHHHhcceEEeeee
Confidence 4567788999999998887766655543333443
No 5
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=6.35 E-value=3.2e+02 Score=17.78 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhcchhh
Q 010427 106 ICFISALSSALFTNDT 121 (511)
Q Consensus 106 ~~~~~~~lS~flsN~~ 121 (511)
+.+++-+.=.|++||+
T Consensus 13 ~ffvsLFiFGfLsnDP 28 (38)
T 3arc_I 13 TFFVLLFVFGFLSGDP 28 (38)
T ss_dssp HHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHccccCCCC
Confidence 4455556667888886
No 6
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=4.29 E-value=7.7e+02 Score=18.57 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhccCChHHHHh
Q 010427 338 TALTAALVLVVLDFKDAMPCLD 359 (511)
Q Consensus 338 ~al~~a~~l~~~~~~~~~~~~~ 359 (511)
..+++.+++++++.++..++.+
T Consensus 10 lliIlvVaLlvfGpkkLP~l~r 31 (78)
T 2l16_A 10 LILIFVIALIIFGPSKLPEIGR 31 (78)
T ss_dssp HHHHHHHHHHHSCTTTHHHHHH
T ss_pred HHHHHHHHhheeCccHhHHHHH
Confidence 3444444455556555554443
No 7
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=3.63 E-value=5.6e+02 Score=17.80 Aligned_cols=17 Identities=6% Similarity=0.116 Sum_probs=10.3
Q ss_pred ecchhhhhhhHHHHHHH
Q 010427 486 SFWTHLKFGLPSTIVIT 502 (511)
Q Consensus 486 ~f~df~k~G~plt~l~~ 502 (511)
.|..+.|+|....+..+
T Consensus 27 gFi~~~k~gt~~~~~~l 43 (51)
T 1m56_D 27 GFVRMVTWAAVVIVAAL 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777765555433
No 8
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=2.98 E-value=2.6e+02 Score=20.67 Aligned_cols=15 Identities=7% Similarity=-0.121 Sum_probs=11.7
Q ss_pred ccccCcccccCCCcc
Q 010427 251 SLSENDLCNLSGGEF 265 (511)
Q Consensus 251 ~~~~~d~l~~~~~~~ 265 (511)
.+++||++.+.|+.+
T Consensus 60 ~l~~GD~l~v~g~~~ 74 (86)
T 3jxo_A 60 EILSGDKLYVIVSAE 74 (86)
T ss_dssp BCCTTCEEEEEEETT
T ss_pred EECCCCEEEEEECHH
Confidence 579999998876654
No 9
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=2.78 E-value=7.2e+02 Score=16.56 Aligned_cols=15 Identities=13% Similarity=0.054 Sum_probs=9.0
Q ss_pred ecchhhhhhhHHHHH
Q 010427 486 SFWTHLKFGLPSTIV 500 (511)
Q Consensus 486 ~f~df~k~G~plt~l 500 (511)
.|..+.|+|....+.
T Consensus 19 gFi~~~k~gt~~~~~ 33 (43)
T 1qle_D 19 GFIKGATWVSILSIA 33 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466677777655443
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=2.65 E-value=1.5e+03 Score=16.82 Aligned_cols=9 Identities=22% Similarity=0.811 Sum_probs=4.2
Q ss_pred HHHHHHHhh
Q 010427 199 LLCMYWRIL 207 (511)
Q Consensus 199 ~~~~~~~~L 207 (511)
+.++.||++
T Consensus 27 lllliwk~~ 35 (79)
T 2knc_B 27 AALLIWKLL 35 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334455544
Done!