Query 010427
Match_columns 511
No_of_seqs 194 out of 1632
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 06:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010427.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010427hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 6.0 1.5E+02 0.011 17.3 2.0 16 106-121 13-28 (35)
2 d1l7va_ f.22.1.1 (A:) ABC tran 3.5 7.7E+02 0.056 21.3 6.3 57 102-163 235-291 (324)
3 d2diia1 a.240.1.1 (A:8-55) TFI 3.1 2.4E+02 0.018 17.6 1.4 15 46-60 29-43 (48)
4 d1vcta2 d.286.1.1 (A:108-201) 3.0 1.3E+02 0.0096 21.3 -0.0 16 251-266 63-78 (94)
5 d2fy8a2 d.286.1.1 (A:245-336) 2.9 1.1E+02 0.0081 21.7 -0.6 16 251-266 67-82 (92)
6 d1oedc_ f.36.1.1 (C:) Acetylch 2.2 1.3E+03 0.097 18.0 7.8 32 59-90 59-90 (260)
7 d1w85i_ a.9.1.1 (I:) E3/E1 bin 2.1 5.2E+02 0.038 15.5 2.1 16 127-142 5-20 (42)
8 d1iwga8 f.35.1.1 (A:513-566,A: 1.9 1.5E+03 0.11 17.6 9.9 20 112-131 158-177 (222)
9 d1wspa1 d.15.1.8 (A:750-832) A 1.8 3.5E+02 0.025 19.0 0.9 10 479-488 37-46 (83)
10 d2cvza1 a.100.1.1 (A:158-289) 1.6 9.7E+02 0.071 17.1 3.6 15 131-145 26-40 (132)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.01 E-value=1.5e+02 Score=17.29 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhcchhh
Q 010427 106 ICFISALSSALFTNDT 121 (511)
Q Consensus 106 ~~~~~~~lS~flsN~~ 121 (511)
+.+++.+.=.|+|||+
T Consensus 13 ~fFv~lFiFGFLSnDP 28 (35)
T d2axti1 13 TFFVLLFVFGFLSGDP 28 (35)
T ss_dssp HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhhccCCC
Confidence 3445555667888876
No 2
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=3.48 E-value=7.7e+02 Score=21.31 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhccCcccccc
Q 010427 102 LLCRICFISALSSALFTNDTCCVILTEFVLKIARQNGVSPHPFLLALASSANVGSSATPIGN 163 (511)
Q Consensus 102 ll~~~~~~~~~lS~flsN~~t~~i~~Pi~~~ia~~~~~~p~~~l~~~a~aan~Gg~~TpiG~ 163 (511)
.+....++++...++.-+.+-+-++.|=+ +|...-+..+..+|.+ +-+|+......+
T Consensus 235 ~l~~~~ll~a~~va~~G~I~FvGLi~Phi---aR~l~g~~~~~~lp~s--~l~Ga~lll~aD 291 (324)
T d1l7va_ 235 LVAATGWMVGVSVALAGAIGFIGLVIPHI---LRLCGLTDHRVLLPGC--ALAGASALLLAD 291 (324)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSSSHHHHH---HHHTTCCSHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHhHHHH---HHHhcCCCccHHHHHH--HHHHHHHHHHHH
Confidence 33445556666667777888888888855 4554333344445443 334555444444
No 3
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.12 E-value=2.4e+02 Score=17.64 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=11.9
Q ss_pred HHHhcCCChHHHHHh
Q 010427 46 MIIFKVITPEEAFAA 60 (511)
Q Consensus 46 l~~~g~~~~~~a~~~ 60 (511)
++++|+++++|.++.
T Consensus 29 LVvs~VitseEFWan 43 (48)
T d2diia1 29 LVVSQVISAEEFWAN 43 (48)
T ss_dssp HHTTTSSCHHHHHHH
T ss_pred HHHhccccHHHHHHh
Confidence 567899999997753
No 4
>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.97 E-value=1.3e+02 Score=21.33 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=12.7
Q ss_pred ccccCcccccCCCccc
Q 010427 251 SLSENDLCNLSGGEFE 266 (511)
Q Consensus 251 ~~~~~d~l~~~~~~~~ 266 (511)
.+++||++++.|+.++
T Consensus 63 ~l~~gD~l~v~G~~~~ 78 (94)
T d1vcta2 63 KIRAGDVLIGRGTRTS 78 (94)
T ss_dssp BCCTTCEEEEEECHHH
T ss_pred EECCCCEEEEEECHHH
Confidence 5799999999877553
No 5
>d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=2.89 E-value=1.1e+02 Score=21.71 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=12.8
Q ss_pred ccccCcccccCCCccc
Q 010427 251 SLSENDLCNLSGGEFE 266 (511)
Q Consensus 251 ~~~~~d~l~~~~~~~~ 266 (511)
++++||++++.|++++
T Consensus 67 ~l~~gD~L~v~G~~~~ 82 (92)
T d2fy8a2 67 SFRAGDIILGIGKPEE 82 (92)
T ss_dssp BCCTTCEEEEEECHHH
T ss_pred EeCCCCEEEEEECHHH
Confidence 5799999999877553
No 6
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.23 E-value=1.3e+03 Score=17.99 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=24.3
Q ss_pred HhCChhHHHHHHHHHHHHHHHHHhcHHHHHHH
Q 010427 59 AAIDLSVLGLLFGTMVVSFYLERAGMFKYLEI 90 (511)
Q Consensus 59 ~~~~~~~i~~l~g~~~i~~~l~~tG~~~~ia~ 90 (511)
+.+..-..++.++|..++.++-.+-+.-.+-+
T Consensus 59 ~~vPli~~y~~~~~~~v~~s~~~t~~Vl~~~~ 90 (260)
T d1oedc_ 59 LAVPLIGKYLMFIMSLVTGVIVNCGIVLNFHF 90 (260)
T ss_dssp HHSCCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhheeeee
Confidence 35777778888888888888888877766643
No 7
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.09 E-value=5.2e+02 Score=15.45 Aligned_cols=16 Identities=38% Similarity=0.374 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCCch
Q 010427 127 TEFVLKIARQNGVSPH 142 (511)
Q Consensus 127 ~Pi~~~ia~~~~~~p~ 142 (511)
.|.+-.++++.|++.+
T Consensus 5 sP~arkla~e~gidl~ 20 (42)
T d1w85i_ 5 MPSVRKYAREKGVDIR 20 (42)
T ss_dssp CHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHHHcCCCHH
Confidence 4778888888888754
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=1.87 E-value=1.5e+03 Score=17.61 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=12.7
Q ss_pred HHHhhcchhhHHHHHHHHHH
Q 010427 112 LSSALFTNDTCCVILTEFVL 131 (511)
Q Consensus 112 ~lS~flsN~~t~~i~~Pi~~ 131 (511)
.-+.+.+..++++-+.|+..
T Consensus 158 ~~~i~~t~ltti~gf~pl~~ 177 (222)
T d1iwga8 158 LRPILMTSLAFILGVMPLVI 177 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHHHHh
Confidence 34555666666777777754
No 9
>d1wspa1 d.15.1.8 (A:750-832) Axin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.80 E-value=3.5e+02 Score=19.01 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=6.5
Q ss_pred CCCCceeecc
Q 010427 479 KPSGYTLSFW 488 (511)
Q Consensus 479 ~~ggy~i~f~ 488 (511)
+||+|++.|+
T Consensus 37 ~~G~y~f~FK 46 (83)
T d1wspa1 37 KKGSYRYYFK 46 (83)
T ss_dssp SCSCEEEEEE
T ss_pred CCCcEEEEEE
Confidence 4677776555
No 10
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=1.63 E-value=9.7e+02 Score=17.08 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=11.9
Q ss_pred HHHHHHcCCCchHHH
Q 010427 131 LKIARQNGVSPHPFL 145 (511)
Q Consensus 131 ~~ia~~~~~~p~~~l 145 (511)
+.++++.|++|..++
T Consensus 26 l~la~~~Gld~~~~~ 40 (132)
T d2cvza1 26 LLALVKQGVSAEKAL 40 (132)
T ss_dssp HHHHHHTTCCHHHHH
T ss_pred HHHHHHcCCCHHHHH
Confidence 567899999987753
Done!