Query 010430
Match_columns 511
No_of_seqs 309 out of 2185
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hvc_A Bifunctional glutamate/ 100.0 8E-120 3E-124 970.2 23.8 497 15-511 8-519 (519)
2 3ial_A Prolyl-tRNA synthetase; 100.0 7E-118 2E-122 953.0 18.7 471 33-511 19-518 (518)
3 1hc7_A Prolyl-tRNA synthetase; 100.0 2E-109 7E-114 887.6 22.3 468 29-511 6-477 (477)
4 1nj1_A PROR, proline-tRNA synt 100.0 1E-105 4E-110 863.1 21.2 467 26-511 31-501 (501)
5 1nj8_A Proline-tRNA synthetase 100.0 1E-101 4E-106 824.6 21.6 452 33-511 2-459 (459)
6 3uh0_A Threonyl-tRNA synthetas 100.0 8.4E-73 2.9E-77 601.6 10.1 358 44-415 39-458 (460)
7 1qf6_A THRRS, threonyl-tRNA sy 100.0 2.2E-72 7.4E-77 621.5 10.8 381 14-415 205-634 (642)
8 1nyr_A Threonyl-tRNA synthetas 100.0 5.6E-67 1.9E-71 580.3 12.7 384 13-414 203-640 (645)
9 2i4l_A Proline-tRNA ligase; al 100.0 6.5E-65 2.2E-69 542.6 7.4 361 38-409 38-457 (458)
10 2j3l_A Prolyl-tRNA synthetase; 100.0 2.4E-63 8.3E-68 544.9 13.6 360 43-415 23-566 (572)
11 1evl_A Threonyl-tRNA synthetas 100.0 9.1E-64 3.1E-68 525.8 9.4 351 44-414 5-392 (401)
12 3a32_A Probable threonyl-tRNA 100.0 8.9E-63 3.1E-67 527.9 7.4 358 53-424 34-457 (471)
13 1ati_A Glycyl-tRNA synthetase; 100.0 1.7E-58 5.7E-63 497.3 11.0 362 42-413 8-503 (505)
14 1g5h_A Mitochondrial DNA polym 100.0 9.9E-57 3.4E-61 476.6 2.0 374 27-417 9-441 (454)
15 3ikl_A DNA polymerase subunit 100.0 2.8E-54 9.5E-59 452.9 11.0 326 56-415 91-449 (459)
16 2zt5_A Glycyl-tRNA synthetase; 100.0 1.3E-53 4.3E-58 472.5 12.1 375 41-446 69-670 (693)
17 2dq0_A Seryl-tRNA synthetase; 100.0 3.6E-52 1.2E-56 440.7 7.0 291 15-315 116-438 (455)
18 3vbb_A Seryl-tRNA synthetase, 100.0 4.4E-52 1.5E-56 441.2 5.6 303 16-324 146-473 (522)
19 1wle_A Seryl-tRNA synthetase; 100.0 1E-50 3.5E-55 432.1 7.7 294 17-319 164-473 (501)
20 1ses_A Seryl-tRNA synthetase; 100.0 1.9E-50 6.6E-55 424.3 6.1 287 16-315 111-412 (421)
21 3qne_A Seryl-tRNA synthetase, 100.0 8.1E-51 2.8E-55 428.7 3.2 298 16-323 119-446 (485)
22 2dq3_A Seryl-tRNA synthetase; 100.0 6.8E-50 2.3E-54 420.9 7.4 293 15-320 115-423 (425)
23 1h4v_B Histidyl-tRNA synthetas 100.0 3.1E-49 1E-53 417.8 12.1 334 54-413 3-420 (421)
24 3lss_A Seryl-tRNA synthetase; 100.0 4.6E-50 1.6E-54 423.4 5.5 297 16-323 152-471 (484)
25 1qe0_A Histidyl-tRNA synthetas 100.0 1.4E-49 4.6E-54 420.3 8.8 330 55-410 3-419 (420)
26 4e51_A Histidine--tRNA ligase; 100.0 9.5E-50 3.2E-54 426.1 6.2 338 51-413 29-458 (467)
27 1htt_A Histidyl-tRNA synthetas 100.0 2E-49 6.7E-54 419.5 8.5 334 53-413 3-422 (423)
28 3err_A Fusion protein of micro 100.0 1.8E-49 6.3E-54 426.5 6.8 285 17-314 221-520 (536)
29 1wu7_A Histidyl-tRNA synthetas 100.0 6E-49 2.1E-53 417.1 5.6 331 53-415 5-427 (434)
30 3net_A Histidyl-tRNA synthetas 100.0 9.5E-46 3.2E-50 395.3 7.7 340 46-413 4-464 (465)
31 4g85_A Histidine-tRNA ligase, 100.0 2.3E-45 7.7E-50 397.7 6.5 332 55-413 68-513 (517)
32 4g84_A Histidine--tRNA ligase, 100.0 5.2E-45 1.8E-49 389.9 8.9 334 54-414 14-461 (464)
33 2cja_A Seryl-tRNA synthetase; 100.0 1E-44 3.5E-49 387.3 7.9 273 31-314 194-511 (522)
34 3lc0_A Histidyl-tRNA synthetas 100.0 5.7E-44 1.9E-48 379.8 5.1 329 50-405 25-446 (456)
35 3mf2_A BLL0957 protein; aminoa 100.0 3.8E-37 1.3E-41 309.6 2.7 247 52-313 48-328 (346)
36 3od1_A ATP phosphoribosyltrans 100.0 2E-31 6.8E-36 278.9 9.9 294 54-382 10-394 (400)
37 1z7m_A ATP phosphoribosyltrans 99.9 7.2E-27 2.4E-31 239.9 7.6 152 51-215 19-171 (344)
38 3rac_A Histidine-tRNA ligase; 99.9 5.4E-26 1.9E-30 235.6 8.4 163 39-215 9-178 (373)
39 1v95_A Nuclear receptor coacti 99.7 1.8E-18 6.1E-23 150.9 3.2 101 312-419 7-111 (130)
40 1usy_A ATP phosphoribosyltrans 99.7 5.8E-18 2E-22 168.5 5.2 115 72-215 4-121 (275)
41 3dsq_A Pyrrolysyl-tRNA synthet 99.6 7.2E-16 2.5E-20 154.1 6.3 135 67-215 69-203 (288)
42 3qtc_A Pyrrolysyl-tRNA synthet 99.3 6.2E-12 2.1E-16 125.9 7.6 132 71-221 79-212 (290)
43 1nnh_A Asparaginyl-tRNA synthe 99.0 5.7E-10 1.9E-14 111.7 7.0 117 65-200 12-133 (294)
44 1wyd_A Hypothetical aspartyl-t 98.7 3E-08 1E-12 104.0 7.7 112 67-203 133-245 (429)
45 1x54_A Asparaginyl-tRNA synthe 98.6 4.8E-08 1.7E-12 102.7 7.6 111 66-201 133-244 (434)
46 1eov_A ASPRS, aspartyl-tRNA sy 98.6 7.6E-08 2.6E-12 102.6 7.7 114 67-204 177-292 (487)
47 1n9w_A Aspartyl-tRNA synthetas 98.5 5.1E-08 1.8E-12 102.1 5.2 114 66-204 123-238 (422)
48 3a74_A Lysyl-tRNA synthetase; 98.5 3E-07 1E-11 98.0 8.9 122 67-213 173-294 (493)
49 3a5y_A GENX, putative lysyl-tR 98.3 7E-07 2.4E-11 91.1 7.5 123 63-204 27-155 (345)
50 1e1o_A Lysyl-tRNA synthetase, 98.3 1.1E-06 3.8E-11 93.8 8.9 121 67-213 182-303 (504)
51 2xgt_A Asparaginyl-tRNA synthe 98.1 4.3E-06 1.5E-10 88.0 7.4 113 67-204 131-244 (435)
52 3l4g_A Phenylalanyl-tRNA synth 98.1 6.4E-06 2.2E-10 87.4 8.3 138 67-215 223-399 (508)
53 3nem_A Aspartyl-tRNA synthetas 98.0 5.6E-06 1.9E-10 86.9 7.4 114 67-204 136-251 (438)
54 3bju_A Lysyl-tRNA synthetase; 98.0 1.5E-05 5.2E-10 85.5 8.8 116 67-204 175-290 (521)
55 3m4p_A Ehasnrs, asparaginyl-tR 97.8 2.1E-05 7.1E-10 83.1 7.5 113 67-204 155-268 (456)
56 4ex5_A Lysine--tRNA ligase; st 97.8 2.4E-05 8.1E-10 83.7 7.8 123 67-214 203-325 (529)
57 1l0w_A Aspartyl-tRNA synthetas 97.8 3E-05 1E-09 84.1 8.0 122 67-214 143-265 (580)
58 1c0a_A Aspartyl tRNA synthetas 97.8 3.1E-05 1.1E-09 84.2 8.1 122 67-214 137-259 (585)
59 4ah6_A Aspartate--tRNA ligase, 97.7 5.1E-05 1.7E-09 82.5 7.5 121 67-213 147-268 (617)
60 3i7f_A Aspartyl-tRNA synthetas 97.5 7.6E-05 2.6E-09 80.1 5.8 115 67-204 243-358 (548)
61 2du3_A O-phosphoseryl-tRNA syn 97.2 0.00025 8.4E-09 75.7 5.2 78 129-215 180-258 (534)
62 1b7y_A Phers, protein (phenyla 97.2 0.00057 1.9E-08 69.6 7.7 135 67-214 99-244 (350)
63 2rhq_A Phenylalanyl-tRNA synth 97.1 0.00059 2E-08 67.9 6.5 129 67-214 51-183 (294)
64 2du7_A O-phosphoseryl-tRNA syn 96.4 0.0029 1E-07 67.5 5.9 79 129-215 192-270 (549)
65 3pco_A Phenylalanyl-tRNA synth 96.1 0.003 1E-07 63.5 3.7 126 67-214 105-234 (327)
66 2odr_B Phosphoseryl-tRNA synth 95.7 0.0095 3.3E-07 64.2 5.5 78 129-215 199-277 (648)
67 2odr_A Phosphoseryl-tRNA synth 95.7 0.0098 3.3E-07 64.2 5.5 78 129-215 199-277 (665)
68 2odr_D Phosphoseryl-tRNA synth 95.6 0.0099 3.4E-07 64.3 5.5 78 129-215 199-277 (685)
69 3l4g_B Phenylalanyl-tRNA synth 95.5 0.025 8.5E-07 61.5 8.1 131 69-215 391-523 (589)
70 2odr_C Phosphoseryl-tRNA synth 95.4 0.01 3.5E-07 64.3 4.4 78 129-215 199-277 (701)
71 2rhq_B Phenylalanyl-tRNA synth 93.2 0.076 2.6E-06 59.7 5.6 137 67-218 491-635 (795)
72 3ig2_A Phenylalanyl-tRNA synth 91.5 0.19 6.4E-06 47.2 5.2 91 71-169 6-97 (213)
73 3ica_A Phenylalanyl-tRNA synth 91.0 0.24 8.3E-06 46.4 5.3 91 71-169 6-97 (213)
74 1b7y_B Phers, protein (phenyla 90.5 0.2 6.7E-06 56.3 4.9 90 67-166 487-578 (785)
75 3cmq_A Phenylalanyl-tRNA synth 89.8 0.56 1.9E-05 48.6 7.3 100 69-186 48-160 (415)
76 3zzx_A Thioredoxin; oxidoreduc 55.8 4.7 0.00016 32.7 1.8 27 432-458 2-34 (105)
77 3pco_B Phenylalanyl-tRNA synth 54.6 11 0.00039 42.1 5.2 86 73-168 493-579 (795)
78 3d6i_A Monothiol glutaredoxin- 31.8 26 0.00087 27.6 2.6 27 432-458 2-35 (112)
79 2j23_A Thioredoxin; immune pro 30.5 31 0.001 27.9 2.9 28 431-458 16-47 (121)
80 1gh2_A Thioredoxin-like protei 27.5 29 0.00099 27.1 2.2 28 431-458 2-35 (107)
81 3lwa_A Secreted thiol-disulfid 26.4 2.7E+02 0.0091 23.6 8.7 58 346-414 124-181 (183)
82 1usy_A ATP phosphoribosyltrans 25.3 38 0.0013 32.5 2.9 45 244-292 225-274 (275)
83 3pwf_A Rubrerythrin; non heme 24.8 88 0.003 27.7 5.0 36 413-459 112-147 (170)
84 2ibo_A Hypothetical protein SP 24.1 1.3E+02 0.0045 24.4 5.5 38 314-355 5-42 (104)
85 3li6_A Calcium-binding protein 23.8 1.8E+02 0.006 19.8 6.0 51 396-446 13-63 (66)
86 3f3q_A Thioredoxin-1; His TAG, 23.8 37 0.0013 26.8 2.2 26 433-458 9-38 (109)
87 1r26_A Thioredoxin; redox-acti 23.6 27 0.00092 28.7 1.3 28 431-458 20-51 (125)
88 3jrn_A AT1G72930 protein; TIR 23.2 90 0.0031 27.9 4.8 47 313-365 8-54 (176)
89 2wz9_A Glutaredoxin-3; protein 22.9 30 0.001 29.4 1.5 34 425-458 7-46 (153)
90 2oe3_A Thioredoxin-3; electron 22.1 36 0.0012 27.2 1.8 28 431-458 13-44 (114)
91 3m9j_A Thioredoxin; oxidoreduc 22.1 51 0.0018 25.2 2.7 27 432-458 2-34 (105)
92 4euy_A Uncharacterized protein 21.6 13 0.00046 29.2 -1.0 26 433-458 3-32 (105)
93 3iv4_A Putative oxidoreductase 21.2 43 0.0015 27.7 2.1 33 428-460 4-40 (112)
94 1m5w_A Pyridoxal phosphate bio 20.3 42 0.0014 31.7 2.0 64 310-377 85-154 (243)
No 1
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.1e-120 Score=970.23 Aligned_cols=497 Identities=55% Similarity=1.022 Sum_probs=453.5
Q ss_pred CCCCccccccceeecceecccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeec
Q 010430 15 GGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPL 94 (511)
Q Consensus 15 ~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~ 94 (511)
|.|....++.+.+.|++.++++||++||++|+++++++|+.+++|+++|+|.|+.+|++|++++++.+.++||++|+||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~f~~wy~~l~~~~~lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~ 87 (519)
T 4hvc_A 8 GSGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPM 87 (519)
T ss_dssp ---------------CCSCTTTCHHHHHHHHHHHTTCEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCS
T ss_pred CCCCCCCccccceecCccCcccCchHHHHHHHHHCCCeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccc
Confidence 44555556777889999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCC
Q 010430 95 FVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTP 174 (511)
Q Consensus 95 l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~G 174 (511)
|++.++|.+++||+++|.++||+|++.++.+++++++||||+|++++++|+++++||++||+|++|||+|||||.+|++|
T Consensus 88 l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~G 167 (519)
T 4hvc_A 88 FVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQP 167 (519)
T ss_dssp EEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBT
T ss_pred cccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCC
Confidence 99999998789999999999999999875445568999999999999999999999999999999999999999989999
Q ss_pred cccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCccccccc
Q 010430 175 FIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGAT 254 (511)
Q Consensus 175 l~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt 254 (511)
|+|+|||+|+|+|+|||+++++++|+..++++|.++|+.|+++||+++.++++++|.|+.++++||+++|++||++|+||
T Consensus 168 l~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT 247 (519)
T 4hvc_A 168 FLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGT 247 (519)
T ss_dssp TTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEE
T ss_pred CcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecc
Confidence 99999999999999999999999999999999999999985599999999999999999999999999999999999999
Q ss_pred ccccccccccceeeEEeCC--CCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccC----ccch
Q 010430 255 SHCLGQNFSKMFEIIFENE--KGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYK----DADT 328 (511)
Q Consensus 255 ~~~lg~~~s~~f~i~y~~~--~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~----~~~~ 328 (511)
+|+||++||++|+++|.|+ +|+++++|++|||+.+|+|++|+|+|+|+.|++||+++||+||+|||++.+ +++.
T Consensus 248 ~~~Lg~~~s~~~~i~y~d~~~~g~~~~vh~~~~Gi~~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~ 327 (519)
T 4hvc_A 248 SHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDK 327 (519)
T ss_dssp EEEEETHHHHHHTCEEECTTSTTCEEECEEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHH
T ss_pred cccccchhhhhcCcEEeccccCCCEEEEEEccccHHHHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhh
Confidence 9999999999999999996 588889999999998999999999999999999999999999999999831 1123
Q ss_pred hHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHH
Q 010430 329 QGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVER 408 (511)
Q Consensus 329 ~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~ 408 (511)
+++.++|.+|++.|+++||+|++|+++++++|+||++|+++||||+|+||++|+++|+|+|++|++++|..|+++++++.
T Consensus 328 e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~ 407 (519)
T 4hvc_A 328 EALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETK 407 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHH
Confidence 56889999999999999999999999845899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeccChhHHHHHhcCCceEEecCCCchhhhHHHHhhccc--------ccccccccc
Q 010430 409 IKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKG--------EMGAAKTLC 480 (511)
Q Consensus 409 i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~wc~~~~ce~~ik~~~~~--------~~~~~~~~c 480 (511)
|.++|++||++||+||++++++||+.++|||||+++|++||||++||||+.+||++||++|++ .+||||+||
T Consensus 408 l~~ll~~i~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~e~~ik~~~~~~~~~~~~~~~~~~~~~~ 487 (519)
T 4hvc_A 408 LQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLC 487 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEECCSHHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHHC----------CCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHhccccccccccccCCceeee
Confidence 999999999999999999999999999999999999999999999999999999999999853 368999999
Q ss_pred ccCCCCC-CCCCCcccccCCCcceEEeeeccC
Q 010430 481 SPLEQPE-IPEGTLCFASGKPAKRWSYWGRSY 511 (511)
Q Consensus 481 ip~~~~~-~~~~~~C~~~g~~a~~~~~~~rsY 511 (511)
|||+++. ...+++|++||+||+.|++|||||
T Consensus 488 ~p~~~~~~~~~~~~c~~~~~~a~~~~~~~~~y 519 (519)
T 4hvc_A 488 IPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY 519 (519)
T ss_dssp EESSCSSCCCTTCBCCC--CBCCEEEEEECBC
T ss_pred ccCCCcccCCCCCcccccCCcceEEEEEEEeC
Confidence 9999874 334568999999999999999999
No 2
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=6.9e-118 Score=952.99 Aligned_cols=471 Identities=32% Similarity=0.581 Sum_probs=448.0
Q ss_pred cccCChhhhHHHhhhccceeee-eeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCC
Q 010430 33 KKDENFGEWYSEVVVNGEMIEY-YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGF 111 (511)
Q Consensus 33 ~~~~~~~~~~~~~~~~a~~~d~-~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f 111 (511)
++++||++||++|+.+|+++|+ ++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|
T Consensus 19 ~~~~~f~~wy~~l~~~aglid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f 98 (518)
T 3ial_A 19 KTRDTFADWFDAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGF 98 (518)
T ss_dssp CCTTTHHHHHHHHHHHTTCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHH
T ss_pred cccccccHHHHHHHHHCCCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccc
Confidence 4789999999999999999998 789999999999999999999999999999999999999999999998789999999
Q ss_pred CcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCccccc
Q 010430 112 APEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 191 (511)
Q Consensus 112 ~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~ 191 (511)
.++||+|++.|+++++++++||||+|++++.+|+++++||++||+|+||||+|||||.+|++||+|+|||+|+|+|+||+
T Consensus 99 ~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~ 178 (518)
T 3ial_A 99 EAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHA 178 (518)
T ss_dssp GGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEES
T ss_pred cccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEEC
Confidence 99999999987555568999999999999999999999999999999999999999998999999999999999999989
Q ss_pred ChhhhHHHHHHHHHHHHHHH-hhhhccccccccccccccccCccceeeEEEeecCCCcccccccccccccccccceeeEE
Q 010430 192 TKSEADDEVLQILELYRRIY-EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIF 270 (511)
Q Consensus 192 ~~e~a~~e~~~~l~~~~~i~-~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y 270 (511)
+++++++|+..|+++|.++| +.|| +||+++.++++|+++||+|+++||++||+ ||++|+||+|+||++||++|+++|
T Consensus 179 ~~e~a~~e~~~~l~~~~~i~~~~LG-lp~~~~~~~~~e~~~gA~yt~~iE~~~pd-gr~ie~gt~~~Lg~~~s~rf~i~y 256 (518)
T 3ial_A 179 TAEDAVSQLSDYWKVIDTIFSDELC-FKGQKLRRVCWDRFPGADYSEVSDVVMPC-GRVLQTAGIHNLGQRFSSTFDILY 256 (518)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTTTC-CCCEEEEECGGGCCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC-CcEEeeecChhhccCCCccceEEEEEcCC-CCEEEEeceecccchhhhhcCcEE
Confidence 99999999999999999999 8887 89999999999999999999999999997 999999999999999999999999
Q ss_pred eCCCCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCc----cchhHHHHHHHHHHHHHHHc-
Q 010430 271 ENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKD----ADTQGIFDACTATVETLCEA- 345 (511)
Q Consensus 271 ~~~~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~----~~~~~~~~~a~~i~~~Lr~~- 345 (511)
.+++|+.+++|+++||+++|+|++|+|+|+|++|++||+||||+||+|||++.++ ++.+++.++|.+|++.|+++
T Consensus 257 ~d~~g~~~~~h~~~~G~~~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~ 336 (518)
T 3ial_A 257 ANKANESVHPYLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKL 336 (518)
T ss_dssp ECTTCCEECCEEEEEEEETHHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCEeeeEEeccchHHHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999998543 11256889999999999999
Q ss_pred CceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCC--ccccccchH---------------HHH
Q 010430 346 GICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGA--KVDLPRSSL---------------VER 408 (511)
Q Consensus 346 Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~e--k~~v~~~el---------------~~~ 408 (511)
||||++|+|++.++|+||++|+++|||++|+||++|+++|+|+|++|++++ +..|++++| ++.
T Consensus 337 Girv~~Ddr~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~~v~~~el~~~~~~~~~~~~~~~~~~ 416 (518)
T 3ial_A 337 GLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHELVVKNV 416 (518)
T ss_dssp CCCEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCEEEEHHHHHCCC---------CCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccceeEeeHHHHhhhhhhhhhhccccHHHH
Confidence 999999999336999999999999999999999999999999999999999 999999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeccChhHHHHHhcC-CceEEecCCCch----hhhHHHHhhccccccccccccccC
Q 010430 409 IKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQ-RKMILAPWCDEE----EVEKDVKARTKGEMGAAKTLCSPL 483 (511)
Q Consensus 409 i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~wc~~~----~ce~~ik~~~~~~~~~~~~~cip~ 483 (511)
|+++|++||++||+||++++++||+.++|||||+++|++ ||||++||||+. +||++||++| |||+|||||
T Consensus 417 ~~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~~-----~~~~~~~p~ 491 (518)
T 3ial_A 417 IKDELDAYKARLKEKAFAFHNSMVTNCKSFDEIVACIENKGGLARFPFYTTEADGEVWDKKLKDAC-----SAEIRGHNP 491 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTEEECSSHHHHHHHHHHTCSEEEEEESCSSGGGHHHHHHHHHHH-----SCEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHHHhcCCCEEEEEecCCCccchHHHHHHHHHh-----CCeEecccc
Confidence 999999999999999999999999999999999999976 489999999999 9999999999 999999999
Q ss_pred CCCCCCCCCcccccCCCcceEEeeeccC
Q 010430 484 EQPEIPEGTLCFASGKPAKRWSYWGRSY 511 (511)
Q Consensus 484 ~~~~~~~~~~C~~~g~~a~~~~~~~rsY 511 (511)
+++. .++.+|++||+||++|+||||||
T Consensus 492 ~~~~-~~~~~c~~~g~~a~~~~~~~~~y 518 (518)
T 3ial_A 492 DENV-LPGEVCALSGKPAVCYMYCAKSY 518 (518)
T ss_dssp TSCC-CTTCBCTTTCSBCSEEEEEECBC
T ss_pred ccCC-CCCCeeeccCCcceEEEEEEEeC
Confidence 9854 24558999999999999999999
No 3
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=2e-109 Score=887.65 Aligned_cols=468 Identities=42% Similarity=0.801 Sum_probs=435.5
Q ss_pred cceecccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcc
Q 010430 29 GLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHI 108 (511)
Q Consensus 29 g~~~~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~ 108 (511)
+++ ++++||++||.+|+.+++++++.+++|+++|+|.|+.+|++|++++++.++++||++|+||+|++.++|.+++||+
T Consensus 6 ~~~-~~~~~f~~~~~~l~~~~~li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~ 84 (477)
T 1hc7_A 6 GLT-PQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHV 84 (477)
T ss_dssp CCC-CHHHHHHHHHHHHHHHTTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC-------
T ss_pred cCC-CcccCchHHHHHHHHHCCCeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcc
Confidence 566 5688999999999999999999889999999999999999999999999999999999999999999998889999
Q ss_pred cCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcc
Q 010430 109 EGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHT 188 (511)
Q Consensus 109 ~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~ 188 (511)
++|.++||+|+|.|+++++++++||||+|++++++|+++++||++||+|+||||+|||||.+ ++||+|+|||+|+|+|+
T Consensus 85 d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~-~rGl~R~REF~q~d~~~ 163 (477)
T 1hc7_A 85 EGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-TRPFLRTSEFLWQEGHT 163 (477)
T ss_dssp --CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-CBTTTBCSEEEEEEEEE
T ss_pred cccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCC-CCCcceeEEEEEccEEE
Confidence 99999999999987656678999999999999999999999999999999999999999976 56999999999999999
Q ss_pred cccChhhhHHHHHHHHHHHHHHH-hhhhccccccccccccccccCccceeeEEEeecCCCccccccccccccccccccee
Q 010430 189 AFATKSEADDEVLQILELYRRIY-EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFE 267 (511)
Q Consensus 189 ~~~~~e~a~~e~~~~l~~~~~i~-~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~ 267 (511)
||++++++++|+..|+++|.++| +.|| +|+.++.+++.++++|+.++.+||+++|+ ||++|+||+|+||+++|++|+
T Consensus 164 ~~~~~~~ad~E~~~~l~~~~~i~~~~Lg-l~~~~~~~~~~e~~~g~~~~~~ie~~~~d-gr~~~~gt~~~lg~~~s~~~g 241 (477)
T 1hc7_A 164 AHATREEAEEEVRRMLSIYARLAREYAA-IPVIEGLKTEKEKFAGAVYTTTIEALMKD-GKALQAGTSHYLGENFARAFD 241 (477)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEECCTTTSCTTSSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTT
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEeCChHHhcCCcccceEEEEEcCC-CcEEEEeeeEEcccccccccC
Confidence 99999999999999999999999 7888 89999999989999999889999999986 899999999999999999999
Q ss_pred eEEeCCCCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCc
Q 010430 268 IIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGI 347 (511)
Q Consensus 268 i~y~~~~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Gi 347 (511)
++|.+.+|+.+++|++|||+.+|+|++|+|+|+|++|++||+++||+||+|+|++.++ +.+++.++|.+|++.|+++|+
T Consensus 242 ~~y~~~~G~~~~~~~~~~GigeRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~-~~~~~~~~a~~l~~~Lr~~Gi 320 (477)
T 1hc7_A 242 IKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDE-SRERVLEAAQGLRQALLAQGL 320 (477)
T ss_dssp CEEECTTSCEEECEEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTT-THHHHHHHHHHHHHHHHHTTC
T ss_pred eEEECCCCCEEeeeEeeccHHHHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcc-hHHHHHHHHHHHHHHHHhCCE
Confidence 9999999988899999999989999999999999999999999999999999998532 112688999999999999999
Q ss_pred eeeecCC-CCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 010430 348 CANMDSR-DNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQ 426 (511)
Q Consensus 348 rv~~D~~-~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~~~~l~~~a~~ 426 (511)
+|++|++ + .++|+||++|+++|+||+|+||++|+++|+|+||+|+ ++|..|+++++++.|++++++||++||+||++
T Consensus 321 ~v~~D~~~~-~s~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l~~~~~~l~~~a~~ 398 (477)
T 1hc7_A 321 RVHLDDRDQ-HTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAALPEALPGKLDAFHEELYRRALA 398 (477)
T ss_dssp CEEECCCSS-SCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCC-CCHHHHHHHHhhcCCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 7 6999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHhcceeccChhHHHHHhcCCceEEecCCCchhhhHHHHhhccccccccccccccCCCCCCCCCCcccccCCCcce--E
Q 010430 427 RRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKR--W 504 (511)
Q Consensus 427 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~wc~~~~ce~~ik~~~~~~~~~~~~~cip~~~~~~~~~~~C~~~g~~a~~--~ 504 (511)
++++||+.++|||||+++|+ ||||++||||+.+||++||++| |||+|||||+++..+ + +|++||+||++ |
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~~~-~-~c~~~~~~~~~~~~ 470 (477)
T 1hc7_A 399 FREDHTRKVDTYEAFKEAVQ-EGFALAFHCGDKACERLIQEET-----TATTRCVPFEAEPEE-G-FCVRCGRPSAYGKR 470 (477)
T ss_dssp HHHHTEEECSSHHHHHHHTT-TSEEEECCCCCHHHHHHHHHHH-----CCEEEEEESSSCCCC-C-BCTTTCCBCCTTSC
T ss_pred HHHhCEEECCCHHHHHHHHh-CCEEEEecCCCHHHHHHHHHHh-----CCceeecccccccCC-C-CCCCCCCcccceeE
Confidence 99999999999999999999 8899999999999999999999 999999999987532 3 59999999999 9
Q ss_pred EeeeccC
Q 010430 505 SYWGRSY 511 (511)
Q Consensus 505 ~~~~rsY 511 (511)
++|||||
T Consensus 471 ~~~~~~y 477 (477)
T 1hc7_A 471 VVFAKAY 477 (477)
T ss_dssp EEEECBC
T ss_pred EEEEeeC
Confidence 9999999
No 4
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=1.2e-105 Score=863.12 Aligned_cols=467 Identities=36% Similarity=0.661 Sum_probs=434.9
Q ss_pred eeecceecccCChhhhHHHhhhccceeee-eeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhh
Q 010430 26 TGLGLSYKKDENFGEWYSEVVVNGEMIEY-YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKE 104 (511)
Q Consensus 26 r~~g~~~~~~~~~~~~~~~~~~~a~~~d~-~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~ 104 (511)
|.+|.. .+||+.||.+|+++++++|+ ..++|+++|+|.|+++|++|++++++.+++ ||++|+||+|++.++|.++
T Consensus 31 ~~~~~~---~~~f~~~~~~l~~~~glid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~ 106 (501)
T 1nj1_A 31 RYHGEK---MTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKE 106 (501)
T ss_dssp -----------CHHHHHHHHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTS
T ss_pred ccccCC---CCCccHhHHHHHHHCCCccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcc
Confidence 788875 24899999999999999998 789999999999999999999999999999 9999999999999999878
Q ss_pred hhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhh-c
Q 010430 105 KDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-W 183 (511)
Q Consensus 105 sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~-q 183 (511)
+||+++|.++||+|++.|+++++++++||||+|++++++|+++++||++||+|+||||+|||||.++++||+|+|||+ |
T Consensus 107 sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q 186 (501)
T 1nj1_A 107 AIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTF 186 (501)
T ss_dssp HHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEE
T ss_pred cCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeee
Confidence 999999999999999876444458999999999999999999999999999999999999999976588999999999 9
Q ss_pred ccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCcccccccccccccccc
Q 010430 184 QEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFS 263 (511)
Q Consensus 184 ~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s 263 (511)
+|+|++|++++++++|+..|+++|.++|+.|| +||+++..++.+++.+|..+++||.++|+ |+++|+||+|++|++++
T Consensus 187 ~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lg-l~~~~~~~~~~e~~~~a~~~~die~~l~~-g~~~ei~t~~~lg~~~a 264 (501)
T 1nj1_A 187 KEAHTIHATASEAEEQVERAVEIYKEFFNSLG-IPYLITRRPPWDKFPGSEYTVAFDTLMPD-GKTLQIGTVHNLGQTFA 264 (501)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHHHHHT-CCCEEEECCTTTSCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHH
T ss_pred eeEEEEECCHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchhhcCCcccceEEEEEcCC-CCEEEEEEEEeccccch
Confidence 99999999999999999999999999999998 89999988888999999999999999987 99999999999999999
Q ss_pred cceeeEEeCCCCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEee-ccCccchhHHHHHHHHHHHHH
Q 010430 264 KMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPV-PYKDADTQGIFDACTATVETL 342 (511)
Q Consensus 264 ~~f~i~y~~~~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi-~~~~~~~~~~~~~a~~i~~~L 342 (511)
++|+++|.+.+|+.+++|++|||+.+|+|++|+|+|+|++|++||++++|+||+|||+ +.++ .+++.++|.+|++.|
T Consensus 265 ~~~~~ry~~~~g~~~~~h~~g~GigeRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~--~~~~~~~a~~l~~~L 342 (501)
T 1nj1_A 265 RTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKA--AEEVMEACRELRSRL 342 (501)
T ss_dssp HHHTCEEECTTSCEEECEEEEEEECTHHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSS--HHHHHHHHHHHHHHH
T ss_pred hhcCeEEECCCCCEEeeeeccccHHHHHHHHHHHHcCcccCccCCccccCceEEEEEeccCCc--hHHHHHHHHHHHHHH
Confidence 9999999999898889999999988999999999999999999999999999999999 5211 036889999999999
Q ss_pred HHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHHHHHHHHH
Q 010430 343 CEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFV 422 (511)
Q Consensus 343 r~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~~~~l~~ 422 (511)
+++|++|++|+++ .++|+||++|+++|+||+|+||++|+++|+|+||+|++++|..|+++++++.|++++++||++||+
T Consensus 343 r~~Gi~v~~D~~~-~s~g~k~~~a~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~~~~l~~ 421 (501)
T 1nj1_A 343 EAAGFRVHLDDRD-IRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLRT 421 (501)
T ss_dssp HTTTCCEEECCCS-SCHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceeccChhHHHHHhcC-CceEEecCCCchhhhHHHHhhccccccccccccccCCCCCCCCCCcccccCCCc
Q 010430 423 AAKQRRDACIQIVKTWDEFVEALGQ-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPA 501 (511)
Q Consensus 423 ~a~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~wc~~~~ce~~ik~~~~~~~~~~~~~cip~~~~~~~~~~~C~~~g~~a 501 (511)
+|++++++||+.++|||||+++|++ ||||++||||+.+||++||++| |||+|||| + +. .+ +|++||+||
T Consensus 422 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p-~-~~--~~-~c~~~~~~~ 491 (501)
T 1nj1_A 422 RAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKV-----RVDILGIQ-E-EG--SG-TCINCGREA 491 (501)
T ss_dssp HHHHHHHTTEEECSSHHHHHHHHHHHCSEEEEEECCCHHHHHHHHHHH-----TCEEEEEE-E-CS--CC-BCTTTCSBC
T ss_pred HHHHHHHhCEEEcCCHHHHHHHHhhCCCEEEEecCCCHHHHHHHHHHh-----CCceeccC-C-CC--CC-cCcCcCCch
Confidence 9999999999999999999999987 7899999999999999999999 99999999 4 32 23 599999999
Q ss_pred ceEEeeeccC
Q 010430 502 KRWSYWGRSY 511 (511)
Q Consensus 502 ~~~~~~~rsY 511 (511)
++|++|||||
T Consensus 492 ~~~~~~~~~y 501 (501)
T 1nj1_A 492 PYRAYLARTY 501 (501)
T ss_dssp CEEEEEECBC
T ss_pred heEEEEEeeC
Confidence 9999999999
No 5
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=1.3e-101 Score=824.55 Aligned_cols=452 Identities=35% Similarity=0.669 Sum_probs=428.6
Q ss_pred cccCChhhhHHHhhhccceeee-eeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCC
Q 010430 33 KKDENFGEWYSEVVVNGEMIEY-YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGF 111 (511)
Q Consensus 33 ~~~~~~~~~~~~~~~~a~~~d~-~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f 111 (511)
++++||++||++|+.+++++|+ .+++|+++|+|.|+.+|++|++++++.++++||++|.||+|++.++|.+++||+++|
T Consensus 2 ~~~~~~~~~~~~l~~~~~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~ 81 (459)
T 1nj8_A 2 SHMLEFSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGF 81 (459)
T ss_dssp --CCCHHHHHHHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGG
T ss_pred CcccCccHhHHHHHHhCCCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCccccc
Confidence 4678999999999999999999 789999999999999999999999999999999999999999999998889999999
Q ss_pred CcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhh-cccCcccc
Q 010430 112 APEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAF 190 (511)
Q Consensus 112 ~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~-q~e~~~~~ 190 (511)
.++||+|+|+|+++++++++||||+|++++++|+++++||++||+|+||||+|||||.++++||+|+|||+ |+|+|++|
T Consensus 82 ~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~ 161 (459)
T 1nj8_A 82 EDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAH 161 (459)
T ss_dssp GGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEE
T ss_pred chhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEE
Confidence 99999999987555568999999999999999999999999999999999999999965488999999999 99999999
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCcccccccccccccccccceeeEE
Q 010430 191 ATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIF 270 (511)
Q Consensus 191 ~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y 270 (511)
++++++++|+..++++|.++|+.|| +|+.++.+++.++++|+.++.+||+++|+ |+++|+||+|+||+++|++|+++|
T Consensus 162 ~~~~~a~~e~~~~i~~~~~~~~~LG-l~~~~~~~~~~ek~~ga~~~~~ie~~~~d-g~~~e~gt~~~lg~~~s~~~~~~Y 239 (459)
T 1nj8_A 162 STKEEAENQVKEAISIYKKFFDTLG-IPYLISKRPEWDKFPGAEYTMAFDTIFPD-GRTMQIATVHNLGQNFSKTFEIIF 239 (459)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHT-CCCEEEEECTTSCCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC-CceEEeecCchhhcCCcccceeEEEEcCC-CcEEEEEEEeecccccccccCeEE
Confidence 9999999999999999999999998 89999988888999999999999999986 999999999999999999999999
Q ss_pred eCCCCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEee-ccCccchhHHHHHHHHHHHHHHHcCcee
Q 010430 271 ENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPV-PYKDADTQGIFDACTATVETLCEAGICA 349 (511)
Q Consensus 271 ~~~~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi-~~~~~~~~~~~~~a~~i~~~Lr~~Girv 349 (511)
.+.+|+..++|++|||+.+|+|++|+|+|+|++|++||+|+||+||+|+|+ +.++ .+++.++|.+|++.|+++ ++|
T Consensus 240 ~~~~G~~~~v~~~~~GigeRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~--~~~~~~~a~~l~~~Lr~~-i~v 316 (459)
T 1nj8_A 240 ETPTGDKDYAYQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGK--EDIVMEKAKEIYEKLKGK-FRV 316 (459)
T ss_dssp ECTTSSEEECEEEEEEECTHHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSC--HHHHHHHHHHHHHHHHTT-SCE
T ss_pred ECCCCCEeeeeEeeccHHHHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCc--HHHHHHHHHHHHHHHhhh-cEE
Confidence 999998889999999987999999999999999999999999999999999 5221 036889999999999999 999
Q ss_pred eecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010430 350 NMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRD 429 (511)
Q Consensus 350 ~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~ 429 (511)
++|+++ .++|+||++|+++|+||+|+||++|+++|+|+||+|++++|..|+++++++.|.+++++||++||+||+++++
T Consensus 317 ~~D~~~-~~~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~~~~~~~~a~~~~~ 395 (459)
T 1nj8_A 317 HIDDRD-IRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFE 395 (459)
T ss_dssp EECCSC-SCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCC-CCHHHHHHHHHHcCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceeccCh--hHHHHHhcC-CceEEecCCCchhhhHHHHhhccccccccccccccCCCCCCCCCCcccccCCCcceEEe
Q 010430 430 ACIQIVKTW--DEFVEALGQ-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSY 506 (511)
Q Consensus 430 ~~~~~~~~~--~e~~~~~~~-~~~~~~~wc~~~~ce~~ik~~~~~~~~~~~~~cip~~~~~~~~~~~C~~~g~~a~~~~~ 506 (511)
+||+.++|| |||+++|++ ||||++|| |+.+||++||++| |||+|||| + +||++|++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~-~--------------~~~~~~~~ 454 (459)
T 1nj8_A 396 NFITILEDINPDEIKNILSEKRGVILVPF-KEEIYNEELEEKV-----EATILGET-E--------------YKGNKYIA 454 (459)
T ss_dssp HHEEECSSCCHHHHHHHTTTTCSEEEEEC-CGGGCSHHHHHHH-----SSCEEEEE-E--------------CSSSEEEE
T ss_pred hCEEEcccCCHHHHHHHHhhCCCEEEEec-CCHHHHHHHHHHh-----CCeeccCc-C--------------CcccEEEE
Confidence 999999999 999999987 68999999 9999999999999 99999999 2 89999999
Q ss_pred eeccC
Q 010430 507 WGRSY 511 (511)
Q Consensus 507 ~~rsY 511 (511)
|||||
T Consensus 455 ~~~~y 459 (459)
T 1nj8_A 455 IAKTY 459 (459)
T ss_dssp EECBC
T ss_pred EEeeC
Confidence 99999
No 6
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=8.4e-73 Score=601.63 Aligned_cols=358 Identities=20% Similarity=0.297 Sum_probs=321.1
Q ss_pred Hhhhccceeeee-eeceeEEeccchHHHHHHHHHHHHHHH-HhcceeeeeeecccChhhhhhhhhcccCCCcceeeEecc
Q 010430 44 EVVVNGEMIEYY-DISGCYIIRPWAMSIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS 121 (511)
Q Consensus 44 ~~~~~a~~~d~~-~~~G~~~~~P~g~~i~~~I~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~ 121 (511)
.|.++.+++++. .++|+++|+|.|+.+|++|++++++.+ .++||++|.||+|++.++|. .+||++.|.++||+|++.
T Consensus 39 ~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sGh~~~~~~emy~~~d~ 117 (460)
T 3uh0_A 39 MVSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWE-KSGHWENYADDMFKVETT 117 (460)
T ss_dssp HHHHHHTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHH-HHTCTTTSGGGSCEECC-
T ss_pred HHHHhCCCceeccCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHH-hcCCccccccceEEEecC
Confidence 456777788764 589999999999999999999999999 99999999999999999996 689999999999999986
Q ss_pred CCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecC-CCCcccchhhhcccCcccccChhhhHHHH
Q 010430 122 GESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEV 200 (511)
Q Consensus 122 g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~-~~Gl~R~REF~q~e~~~~~~~~e~a~~e~ 200 (511)
+. .+++++||||+|++++.+|+++++||++||+|++|||+|||||.++ ++||+|+|||+|+|+|+ +|+++++++|+
T Consensus 118 ~~--~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~ 194 (460)
T 3uh0_A 118 DE--EKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEI 194 (460)
T ss_dssp -------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHH
T ss_pred CC--CCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHH
Confidence 31 1478999999999999999999999999999999999999999876 58999999999999998 78899999999
Q ss_pred HHHHHHHHHHH-hhhhccc---------ccccccccccc------------------------------ccCccceeeEE
Q 010430 201 LQILELYRRIY-EEFLAVP---------VIKGKKSELEK------------------------------FAGGLYTTTVE 240 (511)
Q Consensus 201 ~~~l~~~~~i~-~~lg~ip---------~~~g~~~~~ek------------------------------~~ga~y~~~ie 240 (511)
..+++++.++| +.|| +| +.+..++++++ +.||+|+|+||
T Consensus 195 ~~~i~~~~~~~~~~lG-l~~~~~~~~~~~~~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpkid 273 (460)
T 3uh0_A 195 FNSLKLIDIVYNKIFP-FVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLD 273 (460)
T ss_dssp HHHHHHHHHHHTTTSC-CC-----CCSSCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCEEE
T ss_pred HHHHHHHHHHHHHHcC-CCCcccccccceEEEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccceEE
Confidence 99999999999 8888 66 44333343332 23688999999
Q ss_pred Eee-cCCCcccccccccccccccccceeeEEeCCCCcee---eeeeeccccccceeeEEEEEeeCCCCcccCCcccceeE
Q 010430 241 AFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQV 316 (511)
Q Consensus 241 ~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV 316 (511)
+.+ +.+||.+|+||++ ||++++++|+++|.+++|+.. ++|+++||.+||+|++|+|+| +++||+|+||+||
T Consensus 274 ~~~~d~~gr~~q~~Tiq-ld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~Gg~eRli~~Lie~~----~g~~P~~laP~qv 348 (460)
T 3uh0_A 274 IMVTDHLRKTHQVATIQ-LDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSN----EGRWPFWLNPYQA 348 (460)
T ss_dssp EEEECTTSCEEEEEEEE-EESHHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHH----TTCCCGGGCSCCE
T ss_pred EEEEccCCCeeeecccc-cccccccccceEEECCCCCccCcEEEecCcchHHHHHHHHHHHHc----CCCCCCCCCCceE
Confidence 876 7889999999997 999999999999999998866 789999998899999999987 4799999999999
Q ss_pred EEEeeccCccchhHHHHHHHHHHHHHHHc--------------CceeeecCCCCCCCCCCCCcccccCceeEeeeCcccc
Q 010430 317 IVVPVPYKDADTQGIFDACTATVETLCEA--------------GICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDL 382 (511)
Q Consensus 317 ~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~--------------Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~ 382 (511)
+|||++.++ ++..++|.+|++.|+++ ||+|++|+++ .++|+||++|+++|+||+|+||++|+
T Consensus 349 ~Vipi~~~~---~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~-~~lg~k~r~Ad~~g~p~~ivvG~~E~ 424 (460)
T 3uh0_A 349 VIIPVNTKN---VQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRN-EPVGYRIKSAILKNYSYLIIVGDEEV 424 (460)
T ss_dssp EEEESSTTC---HHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCS-SCHHHHHHHHHHHTCSEEEEECHHHH
T ss_pred EEEEecCCc---HHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhh
Confidence 999998643 45889999999999998 9999999998 59999999999999999999999999
Q ss_pred cCCcEEEEEccCCC-ccccccchHHHHHHHHHHH
Q 010430 383 AKNQVRAVRRDNGA-KVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 383 e~~~Vtvr~r~~~e-k~~v~~~el~~~i~~~l~~ 415 (511)
++|+|+||+|++++ |..|+++++++.|.+++++
T Consensus 425 ~~g~Vtvr~r~~~e~q~~v~~~el~~~l~~~~~~ 458 (460)
T 3uh0_A 425 QLQKYNIRERDNRKSFEKLTMSQIWEKFIELEKN 458 (460)
T ss_dssp HHTCEEEEEGGGTTSCEEECHHHHHHHHHHHHHT
T ss_pred hCCeEEEEECCCCceeEEeeHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999999888764
No 7
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=2.2e-72 Score=621.54 Aligned_cols=381 Identities=18% Similarity=0.299 Sum_probs=342.2
Q ss_pred cCCCCccccccceeecceecccCChhhhHHHhhhccce---------eeee----eeceeEEeccchHHHHHHHHHHHHH
Q 010430 14 TGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEM---------IEYY----DISGCYIIRPWAMSIWETMQKFFDA 80 (511)
Q Consensus 14 ~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~---------~d~~----~~~G~~~~~P~g~~i~~~I~~~~~~ 80 (511)
---||++|+|+||+||++|+++++|++|++. +++|+. ++++ .++|+++|+|.|+++|++|++++++
T Consensus 205 yw~g~~~~~~l~r~~g~~~~~~~~l~~~~~~-~eea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~ 283 (642)
T 1qf6_A 205 YWRGDSNNKMLQRIYGTAWADKKALNAYLQR-LEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRS 283 (642)
T ss_dssp EGGGCTTSCEEEEEEEEECSSHHHHHHHHHH-HHHHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHH
T ss_pred cccCccCCceeEeeeccccCchhHHhhhhhh-hhccccCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHH
Confidence 3369999999999999999999999999987 455531 2333 3899999999999999999999999
Q ss_pred HHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCcccccc
Q 010430 81 EIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQ 160 (511)
Q Consensus 81 ~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q 160 (511)
.+.++||++|.||+|++.++|.+ |||++.|.++||. ++.+ +++++||||+|++++.+|+++++||++||+|+||
T Consensus 284 ~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~----~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~ 357 (642)
T 1qf6_A 284 KLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSE----NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAE 357 (642)
T ss_dssp HHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEET----TEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEE
T ss_pred HHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecC----CceEEecCCCCHHHHHHHHhhhhhccccCeEEEE
Confidence 99999999999999999999964 9999999999999 7776 4899999999999999999999999999999999
Q ss_pred ccceEeeeec-CCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcc-cccccccccc-----------
Q 010430 161 WCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAV-PVIKGKKSEL----------- 227 (511)
Q Consensus 161 ~g~vfR~E~~-~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~i-p~~~g~~~~~----------- 227 (511)
+|+|||+|.+ +++||+|+|||+|+|+|+ |++++++++|+..+++++.++|+.|| + ++.+...+..
T Consensus 358 ~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~~~~i~~~lG-l~~~~v~l~~~~e~~~g~~e~w~ 435 (642)
T 1qf6_A 358 FGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVYDMYSTFG-FEKIVVKLSTRPEKRIGSDEMWD 435 (642)
T ss_dssp EEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHGGGT-CCCCEEEEECCCSSCCSCHHHHH
T ss_pred eccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHHHHHHHHHcC-CCceEEEEecCcccccCCHHHHH
Confidence 9999999987 578999999999999999 67899999999999999999999999 6 6654333211
Q ss_pred -------------------ccccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCcee---eeeeec
Q 010430 228 -------------------EKFAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQNS 284 (511)
Q Consensus 228 -------------------ek~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~~~ 284 (511)
+...||+|+|++|..+ +++||.+++||+| ++++++++|+++|.+.+|+++ ++|+++
T Consensus 436 ~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~-~df~l~~r~~~~y~~~~g~~~~P~~~hrai 514 (642)
T 1qf6_A 436 RAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQ-LDFSLPSRLSASYVGEDNERKVPVMIHRAI 514 (642)
T ss_dssp HHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEE-EESSHHHHTTCCEECTTSCEECCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEeeeEE-EeccCCccCCCEEEecCCCCcCcEEEEecc
Confidence 1234689999999876 6789999999999 899999999999999988654 568888
Q ss_pred cccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCC
Q 010430 285 WAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYS 364 (511)
Q Consensus 285 ~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~ 364 (511)
+|.++|+|++|+|+|+ ..||+|+||+||+|+|++ ++..++|.+|++.|+++|++|++|+++ .++|+||+
T Consensus 515 ~G~ieR~i~~liE~~~----~~~P~~laP~qv~vipi~------~~~~~~a~~v~~~L~~~Gi~v~~D~~~-~~~g~kir 583 (642)
T 1qf6_A 515 LGSMERFIGILTEEFA----GFFPTWLAPVQVVIMNIT------DSQSEYVNELTQKLSNAGIRVKADLRN-EKIGFKIR 583 (642)
T ss_dssp EEEHHHHHHHHHHHHT----TCCCTTTCSSCEEEEESS------HHHHHHHHHHHHHHHTTTCCEEEECCS-SCHHHHHH
T ss_pred CCCHHHHHHHHHHHhc----CCCCcccCCceEEEEEeC------HHHHHHHHHHHHHHHhCCCEEEEECCC-CCHHHHHH
Confidence 8889999999999985 489999999999999998 468899999999999999999999998 59999999
Q ss_pred cccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHH
Q 010430 365 HWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 365 ~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~ 415 (511)
+|++.|+||+|+||++|+++|+|+||+|+++++..|+++++++.|.++++.
T Consensus 584 ~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~ 634 (642)
T 1qf6_A 584 EHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 634 (642)
T ss_dssp HHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999988776653
No 8
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=5.6e-67 Score=580.29 Aligned_cols=384 Identities=15% Similarity=0.249 Sum_probs=338.8
Q ss_pred ccCCCCccccccceeecceecccCChhhhHHHhhhccc------------eeeee--eeceeEEeccchHHHHHHHHHHH
Q 010430 13 ATGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGE------------MIEYY--DISGCYIIRPWAMSIWETMQKFF 78 (511)
Q Consensus 13 ~~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~------------~~d~~--~~~G~~~~~P~g~~i~~~I~~~~ 78 (511)
|---||++|+|++|+||++|++.+++.+|.+.+ ++|+ +.++. .++|+++|+|.|+++|++|++++
T Consensus 203 a~~~~~~~~~~l~ri~g~~~~~~~~l~~~~~~l-~ea~~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~i 281 (645)
T 1nyr_A 203 AYWRGDSNNKMLQRIYGTAFFDKKELKAHLQML-EERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYI 281 (645)
T ss_dssp EETTSCSSSCEEEEEEEEEESSHHHHHHHHHHH-HHHHHTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHhcCCHHHhhhhhhhh-hhhhhhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHH
Confidence 445689999999999999999999999999884 4553 33332 37999999999999999999999
Q ss_pred HHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCC-CceeecCCCccccchhhhhhhhcCCCCccc
Q 010430 79 DAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLE-VPIAIRPTSETVMYPYYSKWIRGHRDLPLK 157 (511)
Q Consensus 79 ~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~-~~l~LRPt~e~~~~~~~~~~~~s~r~LPlk 157 (511)
++.+.++||++|.||+|++.++|. .|||++.|.++||.++|.+ + +.++||||+|++++++|+++++||++||+|
T Consensus 282 r~~~~~~Gy~eV~tP~l~~~~l~~-~sG~~d~~~~~mf~~~d~~----~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr 356 (645)
T 1nyr_A 282 VDKEVSMGYDHVYTPVLANVDLYK-TSGHWDHYQEDMFPPMQLD----ETESMVLRPMNCPHHMMIYANKPHSYRELPIR 356 (645)
T ss_dssp HHHHHHTTEEECBCCSEEETHHHH-HHTHHHHCTTSSCCCEEET----TTEEEEECSSSHHHHHHHHHTSCCBGGGCCEE
T ss_pred HHHHHHcCCEEEECCeeccHHHHh-hCCCccccccCcceeEecC----CCeEEEeCCCCCHHHHHHHHhhhhhccCCCeE
Confidence 999999999999999999999996 5899999999999998876 5 899999999999999999999999999999
Q ss_pred cccccceEeeeec-CCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccc----------
Q 010430 158 LNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE---------- 226 (511)
Q Consensus 158 l~q~g~vfR~E~~-~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~---------- 226 (511)
+||+|+|||+|.+ +..||+|+|||+|+|+|+ |++++++.+|+.++++++.++|+.||+-++.+...+.
T Consensus 357 l~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~g 435 (645)
T 1nyr_A 357 IAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFD 435 (645)
T ss_dssp EEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSC
T ss_pred EEEeccEEecCCCccccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhcC
Confidence 9999999999977 347999999999999999 7788899899999999999999999932554321111
Q ss_pred ----cc--------------------cccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCcee---
Q 010430 227 ----LE--------------------KFAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA--- 278 (511)
Q Consensus 227 ----~e--------------------k~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~--- 278 (511)
|+ ...+++|+|+++..+ +++||.+++||++ +|++++++|+++|.+.+|.++
T Consensus 436 ~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~lg~~~~~gtiq-~D~~l~~~~d~~Y~~~~g~~~~P~ 514 (645)
T 1nyr_A 436 DDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQ-LDFLLPERFDLTYIGQDGEHHRPV 514 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCTTSCCEEEEEEE-EESSHHHHTTCCEECTTSCEECCE
T ss_pred ChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhhhCchhhcceEE-eecccccccceEEECCCCCccCcE
Confidence 11 124678999998776 6689999999998 899999999999999988654
Q ss_pred eeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCC
Q 010430 279 MAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYS 358 (511)
Q Consensus 279 ~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~ 358 (511)
++|++.+|.++|++++|+|+|+ +.||+|+||+||+|+|+++ ++..++|.+|++.|+++|++|++|+++ .+
T Consensus 515 ~ih~~~~GgieR~i~~liE~~~----~~~P~~lap~qv~vip~~~-----~~~~~~a~~i~~~Lr~~Gi~v~~D~~~-~~ 584 (645)
T 1nyr_A 515 VIHRGVVSTMERFVAFLTEETK----GAFPTWLAPKQVQIIPVNV-----DLHYDYARQLQDELKSQGVRVSIDDRN-EK 584 (645)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHT----TCCCTTTCSSCEEEEESSH-----HHHHHHHHHHHHHHHTTTCCEEECCSS-CC
T ss_pred EEEeccCCcHHHHHHHHHHHhc----CCCCCCCCCceEEEEEccc-----HHHHHHHHHHHHHHHhCCCEEEEECCC-CC
Confidence 4677888778999999999874 4899999999999999972 457899999999999999999999998 59
Q ss_pred CCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHH
Q 010430 359 PGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLD 414 (511)
Q Consensus 359 lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~ 414 (511)
+|+||++|++.|+||+|+||++|+++|+|+||+|+++++..|+++++++.|.++++
T Consensus 585 ~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~ 640 (645)
T 1nyr_A 585 MGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIR 640 (645)
T ss_dssp HHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988877665
No 9
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=6.5e-65 Score=542.64 Aligned_cols=361 Identities=20% Similarity=0.341 Sum_probs=314.9
Q ss_pred hhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceee
Q 010430 38 FGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 117 (511)
Q Consensus 38 ~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~ 117 (511)
....-++++.+++++.. .++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|. .+||++.|.++||.
T Consensus 38 a~~~~h~ll~r~g~i~~-~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~-~sg~~d~~~~em~~ 115 (458)
T 2i4l_A 38 AEIVSHRLMLRAGMLRQ-EAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWR-ESGRYDAYGPEMLR 115 (458)
T ss_dssp CCSHHHHHHHHTTCEEE-EETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHH-HHTHHHHSCTTSEE
T ss_pred cCcchHHHHhhcCCeec-cCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHH-hcCCccccccceEE
Confidence 44456678888888875 68999999999999999999999999999999999999999999995 68999999999999
Q ss_pred EeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhH
Q 010430 118 VTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEAD 197 (511)
Q Consensus 118 ~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~ 197 (511)
++|.+ +++++||||+|+.++.++++++.||++||+|+||+|+|||+|.+|+.||+|+|||+|.|+|+|+.++++++
T Consensus 116 ~~d~~----~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad 191 (458)
T 2i4l_A 116 IADRH----KRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGAR 191 (458)
T ss_dssp EECTT----CCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHH
T ss_pred EEeCC----CCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHH
Confidence 99987 58999999999999999999999999999999999999999988888999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccc--------cccc----ccCc--------ccee--------------------
Q 010430 198 DEVLQILELYRRIYEEFLAVPVIKGKKS--------ELEK----FAGG--------LYTT-------------------- 237 (511)
Q Consensus 198 ~e~~~~l~~~~~i~~~lg~ip~~~g~~~--------~~ek----~~ga--------~y~~-------------------- 237 (511)
+|+..|++++.++|+.|| +++.+...+ ..+. ..|. .|..
T Consensus 192 ~e~~~~~~~~~~i~~~lG-l~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~ 270 (458)
T 2i4l_A 192 KSYNKMFVAYLRTFARMG-LKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQW 270 (458)
T ss_dssp HHHHHHHHHHHHHHHTTT-CCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcC
Confidence 999999999999999998 675432110 0000 0000 0000
Q ss_pred -eEEE--------------ee---cCCCcccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEE
Q 010430 238 -TVEA--------------FI---PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMV 298 (511)
Q Consensus 238 -~ie~--------------~~---p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~ 298 (511)
.++. .. +.+.|++++|++|++|..+|.+++++|.+.+|+..+++++|||+ ++|++++|+|+
T Consensus 271 ~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~~G~~~p~~~~gfgiGveRli~al~e~ 350 (458)
T 2i4l_A 271 TSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEA 350 (458)
T ss_dssp HHSCEEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHH
T ss_pred chhhhcChhhcccccccCCCCCcCceeeeeeccCcEEEecccccccCCcEEECCCCCEeceEEeeecccHHHHHHHHHHh
Confidence 0100 01 12458899999999999999999999999999988988999998 89999999999
Q ss_pred eeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeC
Q 010430 299 HGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIG 378 (511)
Q Consensus 299 ~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG 378 (511)
+.|++|+.||+|+||+||+|+|++.++ ++..++|.+|++.|+++|++|++|+++ .++|+||++|+++|+|++|+||
T Consensus 351 ~~d~~g~~~p~~~ap~~v~vi~~~~~~---~~~~~~a~~l~~~Lr~~Gi~v~~D~~~-~~~g~k~~~ad~~g~p~~iivG 426 (458)
T 2i4l_A 351 CHDDNGIIWPEAVAPFRVTILNLKQGD---AATDAACDQLYRELSAKGVDVLYDDTD-QRAGAKFATADLIGIPWQIHVG 426 (458)
T ss_dssp SEETTEECCCTTTCSCSEEEEESSTTC---HHHHHHHHHHHHHHHHTTCCEEEECSS-CCHHHHHHHHHHHTCSEEEEEC
T ss_pred hccccCCcCCcccCCceEEEEecCCCC---HHHHHHHHHHHHHHhhCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEC
Confidence 999999999999999999999996332 567899999999999999999999998 5999999999999999999999
Q ss_pred cccccCCcEEEEEccCCCccccccchHHHHH
Q 010430 379 PKDLAKNQVRAVRRDNGAKVDLPRSSLVERI 409 (511)
Q Consensus 379 ~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i 409 (511)
++|+++|+|+||+|++++|..|+++++++.|
T Consensus 427 ~~e~~~g~v~vr~r~~~~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 427 PRGLAEGKVELKRRSDGARENLALADVVARL 457 (458)
T ss_dssp HHHHTTTEEEEEETTTCCEEEEETTTTTCC-
T ss_pred CchhhCCEEEEEECCCCcEEEEeHHHHHHhh
Confidence 9999999999999999999999999987644
No 10
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=2.4e-63 Score=544.92 Aligned_cols=360 Identities=21% Similarity=0.349 Sum_probs=310.7
Q ss_pred HHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccC
Q 010430 43 SEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG 122 (511)
Q Consensus 43 ~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g 122 (511)
++++.++++++. .++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|. .+||++.|.++||.|+|.+
T Consensus 23 h~~l~~~g~~~~-~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~-~sG~~~~~~~~m~~~~d~~ 100 (572)
T 2j3l_A 23 HQILLRAGYIRQ-VAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWK-ESGRYETYGPNLYRLKDRN 100 (572)
T ss_dssp HHHHHHTTSEEE-EETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHH-HHSHHHHSCTTSCEEECTT
T ss_pred HHHHHhCCCccc-cCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHH-hcCCccccchheEEEecCC
Confidence 355677888876 67999999999999999999999999999999999999999999995 6899999999999999877
Q ss_pred CCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHH
Q 010430 123 ESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQ 202 (511)
Q Consensus 123 ~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~ 202 (511)
+++++||||+|++++++|+++++||++||+|+||+|+|||||.+|+.||+|+|||+|.|+|+|+.+++++++|+..
T Consensus 101 ----~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~ 176 (572)
T 2j3l_A 101 ----DRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRD 176 (572)
T ss_dssp ----CCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHH
T ss_pred ----CCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999997767799999999999999988889999999999
Q ss_pred HHHHHHHHHhhhhccccccccccc-----------------------------------------c--------------
Q 010430 203 ILELYRRIYEEFLAVPVIKGKKSE-----------------------------------------L-------------- 227 (511)
Q Consensus 203 ~l~~~~~i~~~lg~ip~~~g~~~~-----------------------------------------~-------------- 227 (511)
+++++.++|+.|| +++.+...+. .
T Consensus 177 ~~~~~~~~~~~lg-l~~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (572)
T 2j3l_A 177 YEKAYSRIFERCG-LEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKI 255 (572)
T ss_dssp HHHHHHHHHHHTT-CCEEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCEEE
T ss_pred HHHHHHHHHHHcC-CcEEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhccccccccccccccccee
Confidence 9999999999998 6654311000 0
Q ss_pred ---c--------------------------------------------c---ccCc--------------------ccee
Q 010430 228 ---E--------------------------------------------K---FAGG--------------------LYTT 237 (511)
Q Consensus 228 ---e--------------------------------------------k---~~ga--------------------~y~~ 237 (511)
+ + ..++ +++|
T Consensus 256 ~~~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~~a~~~el~~~~g~~~g~~~p 335 (572)
T 2j3l_A 256 ATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGP 335 (572)
T ss_dssp ECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEECCHHHHHHHHSSCTTSCCS
T ss_pred cCCCCCcHHHHHHHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCccccCCHHHHHHhhCCCccccCC
Confidence 0 0 0000 0111
Q ss_pred -----eEEEee-----------------------------------------------cCC-C-----cccccccccccc
Q 010430 238 -----TVEAFI-----------------------------------------------PNT-G-----RGIQGATSHCLG 259 (511)
Q Consensus 238 -----~ie~~~-----------------------------------------------p~~-g-----r~lq~gt~~~lg 259 (511)
.+..++ |.+ | |++|+|++|+||
T Consensus 336 ~gl~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~gg~~~~~~~ievg~~f~Lg 415 (572)
T 2j3l_A 336 VNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLG 415 (572)
T ss_dssp TTCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSSSBEEEEEEEEEEEEEEEE
T ss_pred ccCCCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccCCcceeccceEEEEEeccC
Confidence 111111 001 1 567788999999
Q ss_pred cccccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHH
Q 010430 260 QNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTAT 338 (511)
Q Consensus 260 ~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i 338 (511)
++||++|+++|.+.+|+..+++++|||+ ++|++++|+|+|.|+.|+.||+|++|+||+|+|++.++ ++..++|.+|
T Consensus 416 ~~ys~~~~~~~~~~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~---~~~~~~a~~l 492 (572)
T 2j3l_A 416 TRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKD---EYQTKLSQEV 492 (572)
T ss_dssp THHHHHHTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTC---HHHHHHHHHH
T ss_pred cccccccCCEEECCCCcEEeeeeeccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCC---HHHHHHHHHH
Confidence 9999999999999999877777778998 89999999999999999999999999999999997432 4678999999
Q ss_pred HHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHH
Q 010430 339 VETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 339 ~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~ 415 (511)
++.||++|++|++|+++ .++|+||++|+++|+||+|+||++| ++|+|+||+|++++|..|+++++++.|+ +++.
T Consensus 493 ~~~Lr~~gi~v~~d~~~-~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~~~~ 566 (572)
T 2j3l_A 493 EAMMTEAGYEVLVDDRN-ERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEELESTLS-ILMN 566 (572)
T ss_dssp HHHHHHTTCCEEEECSS-CCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHHHHHHH-HHCC
T ss_pred HHHHHhCCCeEEEeCCC-CCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHHHHHHH-HHhc
Confidence 99999999999999998 5999999999999999999999999 9999999999999999999999998887 6543
No 11
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=9.1e-64 Score=525.83 Aligned_cols=351 Identities=19% Similarity=0.299 Sum_probs=310.4
Q ss_pred Hhhhccceeeee-eeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccC
Q 010430 44 EVVVNGEMIEYY-DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG 122 (511)
Q Consensus 44 ~~~~~a~~~d~~-~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g 122 (511)
.|.++.+++++. .++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|.+ |||++.|.++||. .|.+
T Consensus 5 ~l~~~~~l~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~ 82 (401)
T 1evl_A 5 KIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSE 82 (401)
T ss_dssp HHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEET
T ss_pred HHHHhCCceEecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecC
Confidence 445666777664 489999999999999999999999999999999999999999999975 9999999999999 7766
Q ss_pred CCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeec-CCCCcccchhhhcccCcccccChhhhHHHHH
Q 010430 123 ESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVL 201 (511)
Q Consensus 123 ~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~-~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~ 201 (511)
++.++||||+|++++++|++++.||++||+|+||+|+|||+|.+ |++||+|+|||+|.|+|+ +++++++++|+.
T Consensus 83 ----~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~ 157 (401)
T 1evl_A 83 ----NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVN 157 (401)
T ss_dssp ----TEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHH
T ss_pred ----CceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEE-eCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999987 788999999999999998 567999999999
Q ss_pred HHHHHHHHHHhhhhcc-cccccccccc------------------------------ccccCccceeeEEEee-cCCCcc
Q 010430 202 QILELYRRIYEEFLAV-PVIKGKKSEL------------------------------EKFAGGLYTTTVEAFI-PNTGRG 249 (511)
Q Consensus 202 ~~l~~~~~i~~~lg~i-p~~~g~~~~~------------------------------ek~~ga~y~~~ie~~~-p~~gr~ 249 (511)
++++++.++|+.|| + ++.+...+.. ....+++|++++|..+ .++|+.
T Consensus 158 e~i~~~~~~~~~lg-l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~ 236 (401)
T 1evl_A 158 GCIRLVYDMYSTFG-FEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRA 236 (401)
T ss_dssp HHHHHHHHHHHTTT-CSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCE
T ss_pred HHHHHHHHHHHHcC-CCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCe
Confidence 99999999999998 6 6654322211 1124678899998765 556888
Q ss_pred cccccccccccccccceeeEEeCCCCcee---eeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCcc
Q 010430 250 IQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDA 326 (511)
Q Consensus 250 lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~ 326 (511)
+++||+| ++++++++|+++|.+.+|+.. ++|++++|.++|++++|+++|+ ..||++++|+||+|+|++
T Consensus 237 ~~~gt~~-~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~----~~~p~~~ap~~v~vi~~~---- 307 (401)
T 1evl_A 237 WQCGTVQ-LDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFA----GFFPTWLAPVQVVIMNIT---- 307 (401)
T ss_dssp EEEEEEE-EESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHT----TCCCTTTCSSCEEEEESS----
T ss_pred EEeeeee-eccccccccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhC----CcCCCCCCCeEEEEEecC----
Confidence 8999999 777889999999999888754 4576777778999999999875 379999999999999997
Q ss_pred chhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHH
Q 010430 327 DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLV 406 (511)
Q Consensus 327 ~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~ 406 (511)
++..++|.+|++.||++|++|++|+++ .++|+||++|++.|+||+|+||++|+++|+|+||+|++++|..|++++++
T Consensus 308 --~~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~ 384 (401)
T 1evl_A 308 --DSQSEYVNELTQKLSNAGIRVKADLRN-EKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVI 384 (401)
T ss_dssp --GGGHHHHHHHHHHHHHTTCCEEEECCS-SCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHH
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHH
Confidence 356789999999999999999999997 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 010430 407 ERIKELLD 414 (511)
Q Consensus 407 ~~i~~~l~ 414 (511)
+.|+++++
T Consensus 385 ~~l~~~~~ 392 (401)
T 1evl_A 385 EKLQQEIR 392 (401)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88876554
No 12
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=8.9e-63 Score=527.87 Aligned_cols=358 Identities=16% Similarity=0.206 Sum_probs=312.2
Q ss_pred eeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceee
Q 010430 53 EYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 132 (511)
Q Consensus 53 d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~L 132 (511)
+++.++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|. .+||++.|.++||+| |.+ ++.++|
T Consensus 34 ~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~-~sg~~~~~~~emy~~-d~~----~~~l~L 107 (471)
T 3a32_A 34 ATFTGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFK-VSGHIEFYRNNMYLF-DIE----GHEFAV 107 (471)
T ss_dssp HHHHCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHH-HTCCCTTGGGGSEEE-EET----TEEEEE
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhh-hccCccccccceEEE-ecC----CcEEEE
Confidence 33479999999999999999999999999999999999999999999995 588999999999999 555 489999
Q ss_pred cCCCccccchhhhhhhhcCC---CCccccccccceEeeeecCC-CCcccchhhhcccCcccccChhhhHHHHHHHHHHHH
Q 010430 133 RPTSETVMYPYYSKWIRGHR---DLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYR 208 (511)
Q Consensus 133 RPt~e~~~~~~~~~~~~s~r---~LPlkl~q~g~vfR~E~~~~-~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~ 208 (511)
|||+|++++++|+++++||+ +||+|+||||+|||||.++. +||+|+|||+|.|+|+ +++++++.+|+.++++++.
T Consensus 108 RP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~-f~~~~~~~de~~e~i~~~~ 186 (471)
T 3a32_A 108 KPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHI-IVPGGRVIDVVYDVFEEMK 186 (471)
T ss_dssp CSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EEEGGGHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEE-EcChHHHHHHHHHHHHHHH
Confidence 99999999999999999998 99999999999999997643 8999999999999999 4677888888899999999
Q ss_pred HHHhh-hhcc-----cccc--cccccc---cccc----------------------------------CccceeeEEEee
Q 010430 209 RIYEE-FLAV-----PVIK--GKKSEL---EKFA----------------------------------GGLYTTTVEAFI 243 (511)
Q Consensus 209 ~i~~~-lg~i-----p~~~--g~~~~~---ek~~----------------------------------ga~y~~~ie~~~ 243 (511)
++|+. || + ++.+ +.+..+ +++. +++++|+++..+
T Consensus 187 ~~l~~~lG-l~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~~~l 265 (471)
T 3a32_A 187 LVLERLFK-LGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIM 265 (471)
T ss_dssp HHHHHTSC-CCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCEEEEEE
T ss_pred HHHHHhhC-CCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccchhhCCCccceEE
Confidence 99999 88 6 4643 333211 3332 345677888766
Q ss_pred -c---CCCcccccccccccccccccceeeEEeC--CCCcee--eeeeeccccccceeeEEEEEeeCCCCcccCCccccee
Q 010430 244 -P---NTGRGIQGATSHCLGQNFSKMFEIIFEN--EKGEKA--MAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQ 315 (511)
Q Consensus 244 -p---~~gr~lq~gt~~~lg~~~s~~f~i~y~~--~~g~~~--~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~q 315 (511)
+ ++++.+++|+++ +|.++++.|+++|.+ .+|... .+|++++|.++|++++|+++|+ +.||+|+||+|
T Consensus 266 ~d~~~~l~~~~~~g~~~-lD~~l~r~~d~~Yyt~~~~G~~e~~~i~~~i~GgieRli~~lie~~~----g~~p~~~ap~q 340 (471)
T 3a32_A 266 MVEESGVSKEWQMGTIQ-FDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRR----GRMPFTLAPIQ 340 (471)
T ss_dssp EEESSSCEEEEEEEEEE-EESSHHHHTTHHHHHHHHHCCSCEEEEEEEEEEEHHHHHHHHHHHTT----TCCCGGGCSCS
T ss_pred eccHHhhhhhheeeeEE-ecccccccCCceEeccccCCceeeEEEeccccCcHHHHHHHHHHHhC----CCCCCCcCCce
Confidence 6 667888999765 999999999999987 666544 3567788889999998889763 48999999999
Q ss_pred EEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecC-CCCCCCCCCCCccc-ccCceeEeeeCcccccCCcEEEEEcc
Q 010430 316 VIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDS-RDNYSPGWKYSHWE-MKGVPLRIEIGPKDLAKNQVRAVRRD 393 (511)
Q Consensus 316 V~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~-~~~~~lg~k~~~ae-~~giP~~iivG~~E~e~~~Vtvr~r~ 393 (511)
|+|+|++.+++..++..++|.+|++.|+++|++|++|+ ++ .++|+||++|+ ++|+|++|+||++|+++|+|+||+|+
T Consensus 341 v~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~-~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~ 419 (471)
T 3a32_A 341 FAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSK-TGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFD 419 (471)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEET-TTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEE
T ss_pred EEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCC-CCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECC
Confidence 99999984221124678999999999999999999999 87 59999999999 99999999999999999999999999
Q ss_pred CCC--ccccccc-----hHHHHHHHHHHHHHHHHHHHH
Q 010430 394 NGA--KVDLPRS-----SLVERIKELLDEIQESLFVAA 424 (511)
Q Consensus 394 ~~e--k~~v~~~-----el~~~i~~~l~~~~~~l~~~a 424 (511)
+++ +..|+++ ++++.|.++|++||++|++.|
T Consensus 420 ~~~q~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T 3a32_A 420 LESMKRRRLAIAYGDAADAVENLAAVAEELESPVRSLS 457 (471)
T ss_dssp TTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEeecccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 998 6899999 999999999999999999987
No 13
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=1.7e-58 Score=497.29 Aligned_cols=362 Identities=17% Similarity=0.171 Sum_probs=301.7
Q ss_pred HHHhhhccceeeee-----eeceeEEeccchHHHHHHHHHHHHHHHH--hcceeeeeeecccChhhhhhhhhcccCCCcc
Q 010430 42 YSEVVVNGEMIEYY-----DISGCYIIRPWAMSIWETMQKFFDAEIK--KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE 114 (511)
Q Consensus 42 ~~~~~~~a~~~d~~-----~~~G~~~~~P~g~~i~~~I~~~~~~~~~--~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~e 114 (511)
+.+|+.+++++... .++|+++|+|.|++++++|+++|++.+. ++||++|.||+|.+.++| +.|||++.|.++
T Consensus 8 ~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~-~~SGh~~~f~d~ 86 (505)
T 1ati_A 8 LVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVL-HYSGHEATFADP 86 (505)
T ss_dssp HHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHH-HHTSHHHHCEEE
T ss_pred HHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHH-HhcCChhhcCcc
Confidence 44567788887542 3599999999999999999999999998 999999999999999999 579999999999
Q ss_pred eeeEecc----------------------------------------C-----------------CCC------------
Q 010430 115 VAWVTKS----------------------------------------G-----------------ESD------------ 125 (511)
Q Consensus 115 my~~~~~----------------------------------------g-----------------~~~------------ 125 (511)
||.+.+. . ...
T Consensus 87 m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fn 166 (505)
T 1ati_A 87 MVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFN 166 (505)
T ss_dssp EEEC--------------------------------------------------------------------CCCCEEEE
T ss_pred ceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhh
Confidence 9874210 0 000
Q ss_pred ------------CCCceeecCCCccccchhhhhhhhcC-CCCccccccccceEeeeecCCCCcccchhhhcccCcccccC
Q 010430 126 ------------LEVPIAIRPTSETVMYPYYSKWIRGH-RDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 192 (511)
Q Consensus 126 ------------l~~~l~LRPt~e~~~~~~~~~~~~s~-r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~ 192 (511)
.++.++|||++|++++..|++++.|| ++||+++||+|+|||+|.+|+.||+|+|||+|.|+| +|++
T Consensus 167 lmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~ 245 (505)
T 1ati_A 167 MMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVR 245 (505)
T ss_dssp CBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEEC
T ss_pred hhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEEC
Confidence 02468999999999999999999999 999999999999999999888899999999999999 5999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcccccccc-ccc-ccccc-CccceeeEEEeecCCCcc----ccccccccccccc---
Q 010430 193 KSEADDEVLQILELYRRIYEEFLAVPVIKGK-KSE-LEKFA-GGLYTTTVEAFIPNTGRG----IQGATSHCLGQNF--- 262 (511)
Q Consensus 193 ~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~-~~~-~ek~~-ga~y~~~ie~~~p~~gr~----lq~gt~~~lg~~~--- 262 (511)
++++.+++..+++++.++|+.|| +|+.... .+. .+++. ++..+.++|+++|. +.. ...++.++|+...
T Consensus 246 ~e~~~~~~~~~i~~~~~i~~~LG-l~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~-~~~e~~g~~~~~d~~L~~~~~~~ 323 (505)
T 1ati_A 246 PGEDEYWHRYWVEERLKWWQEMG-LSRENLVPYQQPPESSAHYAKATVDILYRFPH-GSLELEGIAQRTDFDLGSHTKDQ 323 (505)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTT-CCGGGEEEEECCTTTSCTTCSEEEEEEEEETT-EEEEEEEEEECTTHHHHHHCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEECCCChHhhhcccHHHHhHHhhcCC-CCccchhhhcccceecchhhccc
Confidence 99999999999999999999998 7764432 222 24554 66666788888874 322 2233344343322
Q ss_pred -------------ccceeeEEeCCCCcee---eeeeeccccccceeeEEEEEe--------eC-CCCcccCCcccceeEE
Q 010430 263 -------------SKMFEIIFENEKGEKA---MAWQNSWAYTTRTIGVMVMVH--------GD-DKGLVLPPRVASVQVI 317 (511)
Q Consensus 263 -------------s~~f~i~y~~~~g~~~---~v~~~~~Gi~eRli~~Lie~~--------~d-~~G~~lP~~laP~qV~ 317 (511)
..+++++|.+.+|+.+ ++++.++|+ +|++++|+++| +| +.|+.||++++|+||+
T Consensus 324 ~~~~~~~~~~~n~~~~~~~~y~d~~g~~~y~p~vig~s~Gi-eRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~ 402 (505)
T 1ati_A 324 EALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGV-DRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVA 402 (505)
T ss_dssp TTTTCCSCCCCCSCCCSCCCEECSSSCCEECCEEEEEEEEH-HHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEE
T ss_pred cccceeeeecccccceeEEEEEcCCCCeeecceEEEEeeEH-HHHHHHHHHHHhhhcccccccccccccCCcccCCceEE
Confidence 3789999999877642 477789995 99999999875 33 5678899999999999
Q ss_pred EEeeccCccchhHHHHHHHHHHHHHHHcC-ceeeecCCCCCCCCCCCCcccccCceeEeeeCccccc---------CCcE
Q 010430 318 VVPVPYKDADTQGIFDACTATVETLCEAG-ICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA---------KNQV 387 (511)
Q Consensus 318 Iipi~~~~~~~~~~~~~a~~i~~~Lr~~G-irv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e---------~~~V 387 (511)
|+|++.++ ++..++|.+|++.|+++| ++|.+|++ . ++|+||++|++.|+||+|+||++|++ +|+|
T Consensus 403 Vip~~~~~---~~~~~~a~~l~~~Lr~~G~i~v~~D~~-~-sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V 477 (505)
T 1ati_A 403 VIPLVKNR---PEITEYAKRLKARLLALGLGRVLYEDT-G-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTV 477 (505)
T ss_dssp EEESCSSC---HHHHHHHHHHHHHHHTTCSSCEEECCC-S-CHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEE
T ss_pred EEEcCCcc---HHHHHHHHHHHHHHhccCCEEEEECCC-C-CHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEE
Confidence 99998522 468899999999999999 99999998 4 99999999999999999999999999 9999
Q ss_pred EEEEccCCCccccccchHHHHHHHHH
Q 010430 388 RAVRRDNGAKVDLPRSSLVERIKELL 413 (511)
Q Consensus 388 tvr~r~~~ek~~v~~~el~~~i~~~l 413 (511)
+||+|++++|..|+++++++.|.+++
T Consensus 478 ~vr~r~t~~q~~v~~~el~~~l~~~l 503 (505)
T 1ati_A 478 TVRDRDTMEQIRLHVDELEGFLRERL 503 (505)
T ss_dssp EEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred EEEECCCCceEEEEHHHHHHHHHHHh
Confidence 99999999999999999998887654
No 14
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=9.9e-57 Score=476.65 Aligned_cols=374 Identities=13% Similarity=0.048 Sum_probs=281.4
Q ss_pred eecceecccCChhhh---HHHhhhccceeee----e----eeceeE-EeccchHHHHHHHHHHHHHHH--Hhcceeeeee
Q 010430 27 GLGLSYKKDENFGEW---YSEVVVNGEMIEY----Y----DISGCY-IIRPWAMSIWETMQKFFDAEI--KKMKIQNCYF 92 (511)
Q Consensus 27 ~~g~~~~~~~~~~~~---~~~~~~~a~~~d~----~----~~~G~~-~~~P~g~~i~~~I~~~~~~~~--~~~G~~ev~t 92 (511)
.-|+.||+...++.. +..|+.+.+++.. + .++|++ +|+|.|+.|+++|++++++.+ .+.||++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~krrgf~~~s~eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~t 88 (454)
T 1g5h_A 9 ADGTQQPDAPEHAVAREALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDS 88 (454)
T ss_dssp ----------------CHHHHHHHHTTSBCCCGGGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHcCCccccchhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEc
Confidence 457788887776653 3355667777643 2 246888 999999999999999999884 5899999999
Q ss_pred ecccChhhhhhhh--hc---ccCCCcc----------eeeEe-ccCCCCCCCceeecCCCccccchhhhhhhhcCC-CCc
Q 010430 93 PLFVSPTVLQKEK--DH---IEGFAPE----------VAWVT-KSGESDLEVPIAIRPTSETVMYPYYSKWIRGHR-DLP 155 (511)
Q Consensus 93 P~l~~~~l~~~~s--g~---~~~f~~e----------my~~~-~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r-~LP 155 (511)
|++.+.++|.+ + || +++|.++ |+.+. +. .+++++||||+|++++..|+++++||+ +||
T Consensus 89 p~l~~~~~~~~-s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~----~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP 163 (454)
T 1g5h_A 89 LHQEPGSSQPR-DSAFRLVSPESIREILQDREPSKEQLVAFLENL----LKTSGKLRATLLHGALEHYVNCLDLVNRKLP 163 (454)
T ss_dssp CSEECCCCSSC-CCCCEEECHHHHHHHHCC---CHHHHHHHHHHH----HHHSCEECSCSHHHHHHTHHHHHHHTTTBSC
T ss_pred CccCChhhccc-cccCcccHHHHHHHHhhccCCCHHHHHHHHHhh----cCcceeecccccHHHHHHHhhhHhhcccCCC
Confidence 99999999964 5 77 7887665 33221 01 136899999999999999999999998 999
Q ss_pred cccccccceEe---eeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccccccccc-cccccc
Q 010430 156 LKLNQWCNVVR---WEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKS-ELEKFA 231 (511)
Q Consensus 156 lkl~q~g~vfR---~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~-~~ek~~ 231 (511)
++++|||+||| +|.+|..||+|+|||+|+|+|+ ||+++++.+++..+++.+..+|+.|| +|....... .++.-
T Consensus 164 ~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~~~~~~~lg-i~~~~~r~~~~~~~~- 240 (454)
T 1g5h_A 164 FGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHRLLWWRKFA-MSPSNFSSADCQDEL- 240 (454)
T ss_dssp EEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHHTTC-SSGGGEEEEEEECTT-
T ss_pred EEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHHHHHHHHHHHcC-CCceeEEecCCHHHH-
Confidence 99999999999 5999877999999999999998 89999999999999999999999998 664433222 22221
Q ss_pred CccceeeEEEeecCCCc----ccccccccccccc-cccceeeEEeCCCCcee--eeeeeccccccceeeEEEEEeeCC--
Q 010430 232 GGLYTTTVEAFIPNTGR----GIQGATSHCLGQN-FSKMFEIIFENEKGEKA--MAWQNSWAYTTRTIGVMVMVHGDD-- 302 (511)
Q Consensus 232 ga~y~~~ie~~~p~~gr----~lq~gt~~~lg~~-~s~~f~i~y~~~~g~~~--~v~~~~~Gi~eRli~~Lie~~~d~-- 302 (511)
+..+.+++..+|. |. +++..|.++|++. ...+|+++|.+. +++. +++..|+| ++|+++++++++.++
T Consensus 241 -a~~~~~ie~~~p~-g~~e~~g~~~~td~~l~~~~~~s~~~l~y~d~-~~~~~P~vi~~s~G-v~R~i~aile~~~~~~~ 316 (454)
T 1g5h_A 241 -GRKGSKLYYSFPW-GKEPIETLWNLGDQELLHTYPGNVSTIQGRDG-RKNVVPCVLSVSGD-VDLGTLAYLYDSFQLAE 316 (454)
T ss_dssp -SCEEEEEEEEETT-EEEEEEEEEEEESHHHHHHSTTCGGGSCEEET-TEEECCEEEEEEEE-HHHHHHHHHHHHEEC--
T ss_pred -HhcCCCcEEecCC-CceEEEEecCCCHHHHHhccCCceeeEEEECC-CCcEeeEEEeCccc-HHHHHHHHHHHhcchhh
Confidence 4677899999975 43 3334566666644 124599999985 4232 34456888 599986666554332
Q ss_pred -----------CCcccCCcccceeEEEE-eeccCccchhHHHHHHHHHHHHHHHcCceee--ecCC-CCCCCCCCCCccc
Q 010430 303 -----------KGLVLPPRVASVQVIVV-PVPYKDADTQGIFDACTATVETLCEAGICAN--MDSR-DNYSPGWKYSHWE 367 (511)
Q Consensus 303 -----------~G~~lP~~laP~qV~Ii-pi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~--~D~~-~~~~lg~k~~~ae 367 (511)
.+++||+|+||+||+|+ |++.+ ++..++|.+|++.|+++|++|+ +|++ + .++|+||++|+
T Consensus 317 ~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~----e~~~~~A~~l~~~Lr~~Gi~v~~~~Ddr~~-~sigkk~r~Ad 391 (454)
T 1g5h_A 317 NSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPT----VELRQVCQGLLNELLENGISVWPGYSETVH-SSLEQLHSKYD 391 (454)
T ss_dssp ----------CCEECCCTTTCSCCEEEEECSSCH----HHHHHHHHHHHHHHHHTTCCEEEGGGSCCC-SCHHHHHHHHH
T ss_pred cccccCCcccceeEecCcccCCCeEEEEEeCCCc----HHHHHHHHHHHHHHHHCCCEEEEEecCCCC-CCHHHHHHHHH
Confidence 36899999999999999 65421 4678999999999999999995 9997 6 59999999999
Q ss_pred ccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHHHH
Q 010430 368 MKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQ 417 (511)
Q Consensus 368 ~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~~ 417 (511)
++|+||+|+||++|+++|+|+||+|++++|..|+++++++.|.++++.++
T Consensus 392 ~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~~~~ 441 (454)
T 1g5h_A 392 EMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASAS 441 (454)
T ss_dssp HTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999988887655
No 15
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-54 Score=452.87 Aligned_cols=326 Identities=14% Similarity=0.054 Sum_probs=261.2
Q ss_pred eeceeE-EeccchHHHHHHHHHHHHHHH-Hhcc-eeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceee
Q 010430 56 DISGCY-IIRPWAMSIWETMQKFFDAEI-KKMK-IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 132 (511)
Q Consensus 56 ~~~G~~-~~~P~g~~i~~~I~~~~~~~~-~~~G-~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~L 132 (511)
.+.|++ +|+|.|+.|+++|++.|++.+ .+.| +.+|.||+ .++| +.||||++|. ++|
T Consensus 91 ~~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~-~~SGH~d~~~-----------------~~L 149 (459)
T 3ikl_A 91 LLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPG-PLLPGDSAFR-----------------GGL 149 (459)
T ss_dssp HHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCS-CCCSSCSCCT-----------------TB-
T ss_pred CccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---cccc-ccCcchhhhc-----------------ceE
Confidence 367777 999999999999999666665 4356 77799999 4558 6799999886 689
Q ss_pred cCCCccccchhhhhhhhcCC-CCccccccccceEeeee---cCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHH
Q 010430 133 RPTSETVMYPYYSKWIRGHR-DLPLKLNQWCNVVRWEF---SNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYR 208 (511)
Q Consensus 133 RPt~e~~~~~~~~~~~~s~r-~LPlkl~q~g~vfR~E~---~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~ 208 (511)
|||+|+++...|+++..||+ +||++++|+|+|||+|. .+.+||+|+|||+|.|+|+ ||+|+++++++..+++...
T Consensus 150 RPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~~ 228 (459)
T 3ikl_A 150 RENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHRL 228 (459)
T ss_dssp CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHHH
Confidence 99999999999999999998 99999999999999995 5667999999999999997 9999999999999999999
Q ss_pred HHHhhhhccc---cccccccccccccCccceeeEEEeecCCCccccccccccccccc----ccceeeEEeCCCCcee---
Q 010430 209 RIYEEFLAVP---VIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNF----SKMFEIIFENEKGEKA--- 278 (511)
Q Consensus 209 ~i~~~lg~ip---~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~----s~~f~i~y~~~~g~~~--- 278 (511)
.+|+.|| +| ++....+ .++ |..+.+||+++|. |. -++.++++.++.. ...++.+|.+.+|+++
T Consensus 229 ~~~~~LG-i~~~~~r~~~~~-~ee---A~~~~DiE~~~p~-G~-~E~~g~sn~tDfqL~~~~~~~~~~~~~~dg~~k~~P 301 (459)
T 3ikl_A 229 QWWRKFA-MSPSNFSSSDCQ-DEE---GRKGNKLYYNFPW-GK-ELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVP 301 (459)
T ss_dssp HHHHHHC-SSGGGEEEEEEC-CSS---SSCEEEEEEECSS-CE-EEEEEEEEEETHHHHHHSCSCSSSSCCBSSSCBCCC
T ss_pred HHHHHhC-CChhhEEEeecC-chH---HHhhcCeEEEcCC-ce-EEEeeeeccchhhhhccccccCceeEccCCCeeeee
Confidence 9999998 66 4443332 223 5668999999986 42 2333333332222 2456677777777543
Q ss_pred eeeeeccccccceeeEEEEEeeCCCC-------------cccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHc
Q 010430 279 MAWQNSWAYTTRTIGVMVMVHGDDKG-------------LVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEA 345 (511)
Q Consensus 279 ~v~~~~~Gi~eRli~~Lie~~~d~~G-------------~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~ 345 (511)
++...++| ++|++.++++++.|+.| ++||+||||+||+|| +..+. .+++.++|.+|++.|+++
T Consensus 302 ~vi~~s~G-v~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Ii-i~~~~--~e~~~~~A~~L~~~Lr~~ 377 (459)
T 3ikl_A 302 CVLSVNGD-LDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALD-VGRGP--TLELRQVCQGLFNELLEN 377 (459)
T ss_dssp EEEEEEEE-HHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEE-ESSCC--STTHHHHHHHHHHHHHHT
T ss_pred EEEEeccc-HHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEE-eCCCC--CHHHHHHHHHHHHHHHHC
Confidence 33345666 79998888877666555 899999999999999 65321 156889999999999999
Q ss_pred Cceee--ecCC-CCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHH
Q 010430 346 GICAN--MDSR-DNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 346 Girv~--~D~~-~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~ 415 (511)
||+|+ +|++ + .++|+||++|+++||||+|+||++|+++|+|+||+|++++|..|+++++++.|.+++..
T Consensus 378 GIrV~~d~Ddr~~-~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 378 GISVWPGYLETMQ-SSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp SCCEECGGGSSSC-CTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHHH
T ss_pred CCeEEEeecCCcC-CCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 99999 8888 6 59999999999999999999999999999999999999999999999999998877765
No 16
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=1.3e-53 Score=472.54 Aligned_cols=375 Identities=18% Similarity=0.196 Sum_probs=278.6
Q ss_pred hHHHhhhccceeee-----eeeceeEEeccchHHHHHHHHHHHHHHHH-hcceeeeeeecccChhhhhhhhhcccCCCcc
Q 010430 41 WYSEVVVNGEMIEY-----YDISGCYIIRPWAMSIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE 114 (511)
Q Consensus 41 ~~~~~~~~a~~~d~-----~~~~G~~~~~P~g~~i~~~I~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~e 114 (511)
-+.+++.+++++-. ..++|+|+|+|.|+++|++|+++|++.+. ..||++|.||+|.|.+|| +.||||+.|.++
T Consensus 69 ~~~~l~~r~gf~~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lw-k~SGH~~~f~d~ 147 (693)
T 2zt5_A 69 KMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVL-KTSGHVDKFADF 147 (693)
T ss_dssp HHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHH-HHHTHHHHCEEE
T ss_pred HHHHHHHhCCCcccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHH-hhcCCccccccc
Confidence 34566778887753 24699999999999999999999999998 669999999999999999 589999999987
Q ss_pred eeeEeccCC-----------------------------------------------------------------------
Q 010430 115 VAWVTKSGE----------------------------------------------------------------------- 123 (511)
Q Consensus 115 my~~~~~g~----------------------------------------------------------------------- 123 (511)
|+.+++.++
T Consensus 148 m~~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlm 227 (693)
T 2zt5_A 148 MVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLM 227 (693)
T ss_dssp EEEBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECC
T ss_pred ceeeccCCceeeccHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhhee
Confidence 764433210
Q ss_pred ------CCCCCceeecCCCccccchhhhhhhhc-CCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhh
Q 010430 124 ------SDLEVPIAIRPTSETVMYPYYSKWIRG-HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA 196 (511)
Q Consensus 124 ------~~l~~~l~LRPt~e~~~~~~~~~~~~s-~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a 196 (511)
...++.++|||+.+++++..|++++.+ |++||+++||||++||||.+|+.||+|+|||+|.|+|+ |+++++.
T Consensus 228 f~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~-F~~p~~~ 306 (693)
T 2zt5_A 228 FKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEH-FVDPSEK 306 (693)
T ss_dssp CEEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEE-EECTTCC
T ss_pred eeccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceE-EeCcchh
Confidence 001478999999999999999999988 79999999999999999999988999999999999999 5666654
Q ss_pred H------------------------------------------HHHHHHHHHHHHHHhhhhccc-cccc--ccccccccc
Q 010430 197 D------------------------------------------DEVLQILELYRRIYEEFLAVP-VIKG--KKSELEKFA 231 (511)
Q Consensus 197 ~------------------------------------------~e~~~~l~~~~~i~~~lg~ip-~~~g--~~~~~ek~~ 231 (511)
. +++..++..+.++|..+| ++ ..+. .....++..
T Consensus 307 ~~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lG-i~~~~~~~~~~~~~e~a~ 385 (693)
T 2zt5_A 307 DHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVG-ISPDKLRFRQHMENEMAH 385 (693)
T ss_dssp CCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHT-CCGGGEEEEECCGGGSCT
T ss_pred cchhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcC-cCccEEEEeccCchhhcc
Confidence 2 456667888899999998 54 2211 111111111
Q ss_pred CccceeeEEEee-----------------------------------------------------------------cCC
Q 010430 232 GGLYTTTVEAFI-----------------------------------------------------------------PNT 246 (511)
Q Consensus 232 ga~y~~~ie~~~-----------------------------------------------------------------p~~ 246 (511)
.+....+++... +.+
T Consensus 386 ya~~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L 465 (693)
T 2zt5_A 386 YACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYL 465 (693)
T ss_dssp TCSSEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC----------------------------------
T ss_pred chhhhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHh
Confidence 111111111110 001
Q ss_pred Ccccc------------c--------ccccccccccccceee-EEeCC-CCce-e-eeeeeccccccceeeEEEEEeeC-
Q 010430 247 GRGIQ------------G--------ATSHCLGQNFSKMFEI-IFENE-KGEK-A-MAWQNSWAYTTRTIGVMVMVHGD- 301 (511)
Q Consensus 247 gr~lq------------~--------gt~~~lg~~~s~~f~i-~y~~~-~g~~-~-~v~~~~~Gi~eRli~~Lie~~~d- 301 (511)
++..+ + ||+|++.. ..+++ +|.+. .|.+ . .+++.||| ++|++++|++++.|
T Consensus 466 ~~~~~~~~~~l~~~L~~~g~i~i~vdGt~Fei~~---~~~~~~~y~~~~~Ggry~P~Vi~~s~G-igRli~aLie~~~~~ 541 (693)
T 2zt5_A 466 AICDECYITEMEMLLNEKGEFTIETEGKTFQLTK---DMINVKRFQKTLYVEEVVPNVIEPSFG-LGRIMYTVFEHTFHV 541 (693)
T ss_dssp -------------------------------------------------CCEEECCEEEEEEEE-HHHHHHHHHHHHEEE
T ss_pred hhhhHHHHHHHHHHHHhcCCEEEEECCEEEEecc---cccceeeEEeccCCcEecCcceeCeeh-HHHHHHHHHHHhccc
Confidence 11000 1 12232221 11222 23222 3432 2 34577999 58999999998555
Q ss_pred ----CC--CcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEe
Q 010430 302 ----DK--GLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRI 375 (511)
Q Consensus 302 ----~~--G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~i 375 (511)
+. |+.||+|+||+||+|+|++.+ ++..++|.+|++.||++||+|.+|+++ .++|+||++|+++|+||+|
T Consensus 542 ~~~~~~r~g~~~P~~lAP~qV~Vipl~~~----~~~~~~A~~l~~~Lr~~Gi~v~~D~~~-~sigkk~k~Ad~~G~p~~I 616 (693)
T 2zt5_A 542 REGDEQRTFFSFPAVVAPFKCSVLPLSQN----QEFMPFVKELSEALTRHGVSHKVDDSS-GSIGRRYARTDEIGVAFGV 616 (693)
T ss_dssp CSSTTCCEEECCCTTTSSCSEEEEESCCS----TTTHHHHHHHHHHHHHTTCCEEECCCC-SCHHHHHHHHHHTTCCEEE
T ss_pred cccccccccccCCCCCCCCeEEEEEecCc----HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEE
Confidence 44 789999999999999999842 347899999999999999999999988 5999999999999999999
Q ss_pred eeCcccc--cCCcEEEEEccCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcceeccChhHHHHHhc
Q 010430 376 EIGPKDL--AKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALG 446 (511)
Q Consensus 376 ivG~~E~--e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~ 446 (511)
+||++|+ ++|+|+||+|++++|..|+++++++.|.++++. ..||+|+.+.+-
T Consensus 617 iIG~~El~~~~g~Vtvr~r~t~eq~~v~l~el~~~l~~~l~~-------------------~~~w~~~~~~~~ 670 (693)
T 2zt5_A 617 TIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANG-------------------NITWADVEARYP 670 (693)
T ss_dssp EECHHHHTSSSCEEEEEETTTCCEEEEETTTHHHHHHHHHTT-------------------SSCHHHHHHHSC
T ss_pred EEcchhhhccCCEEEEEECCCCceEEEeHHHHHHHHHHHHhC-------------------cccHHHHHHhcc
Confidence 9999999 999999999999999999999999887655432 578999999884
No 17
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=3.6e-52 Score=440.69 Aligned_cols=291 Identities=14% Similarity=0.113 Sum_probs=262.3
Q ss_pred CCCCccccccceeecceecccC------------------Ch-hhhHHHhhhccceeeee-----eeceeEEeccchHHH
Q 010430 15 GGGKKKEVKKETGLGLSYKKDE------------------NF-GEWYSEVVVNGEMIEYY-----DISGCYIIRPWAMSI 70 (511)
Q Consensus 15 ~~~~~~~~~~~r~~g~~~~~~~------------------~~-~~~~~~~~~~a~~~d~~-----~~~G~~~~~P~g~~i 70 (511)
-|.|+++...+|.+|.+...+. +| ..+..+|.++++++|+. .++|+++|+|.|+++
T Consensus 116 ~g~~e~~n~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l 195 (455)
T 2dq0_A 116 VGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVIL 195 (455)
T ss_dssp CCSSGGGCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEESSCCCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHH
T ss_pred CCCCCCCCEEEEEcCCCCCccccchhhhcccccccccccccCccCCHHHHHhcCCcEEecccccccCCCeEEECCHHHHH
Confidence 4567788889999998633220 02 12333778899999985 358999999999999
Q ss_pred HHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhc
Q 010430 71 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRG 150 (511)
Q Consensus 71 ~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s 150 (511)
|++|++++++.+.++||++|.||+|++.++|. .+||++.|.++||++++ ++++||||+|++++.+|++++.|
T Consensus 196 ~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sG~~~~f~~emy~~~d-------~~l~LrPt~e~~~~~~~~~~~~s 267 (455)
T 2dq0_A 196 DLALIRFALDRLIEKGFTPVIPPYMVRRFVEE-GSTSFEDFEDVIYKVED-------EDLYLIPTAEHPLAGMHANEILD 267 (455)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHH-TTSCTTHHHHTCCBBTT-------SSCEECSSTHHHHHHTTTTEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCcccCHHHHH-hcCCCCCChHhhCeecC-------CcEEEcCcCcHHHHHHHHhCccC
Confidence 99999999999999999999999999999996 57999999999999863 68999999999999999999999
Q ss_pred CCCCccccccccceEeeeec----CCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccc
Q 010430 151 HRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE 226 (511)
Q Consensus 151 ~r~LPlkl~q~g~vfR~E~~----~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~ 226 (511)
|++||+|++++|+|||+|.+ .++||+|+|||+|.|+|+ +|+++++++++..+++++.++|+.|| +||++...+.
T Consensus 268 ~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~-f~~pe~s~~~~~e~l~~~~~il~~LG-L~yrv~~~~~ 345 (455)
T 2dq0_A 268 GKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFV-YSRPEESWEWHEKIIRNAEELFQELE-IPYRVVNICT 345 (455)
T ss_dssp TTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEE-EECTTTHHHHHHHHHHHHHHHHHHTT-CCEEEEECCG
T ss_pred chhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEE-ecCHHHHHHHHHHHHHHHHHHHHHcC-CceEEEECCC
Confidence 99999999999999999974 357999999999999997 89999999999999999999999998 8999888888
Q ss_pred cccccCccceeeEEEeecCCCcccccccccccccccccceeeEEeCC-CCceeeeeee-cccc-ccceeeEEEEEeeCCC
Q 010430 227 LEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENE-KGEKAMAWQN-SWAY-TTRTIGVMVMVHGDDK 303 (511)
Q Consensus 227 ~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~-~g~~~~v~~~-~~Gi-~eRli~~Lie~~~d~~ 303 (511)
.+.+.++..++++|+|+|+.++.+++++++++++.++++|+++|.++ +|+..++|+. ++|+ ++|+|++|+|+|+|++
T Consensus 346 gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR~~iry~~~~~g~~~~vHtlngs~lav~R~i~allE~~~~~d 425 (455)
T 2dq0_A 346 GDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAILENHQEED 425 (455)
T ss_dssp GGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCCEECEEEEEEEEEHHHHHHHHHHHSBCTT
T ss_pred ccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhccCcEEecCCCCcEEEEEEEechHhHHHHHHHHHHHHccCCC
Confidence 89999999999999999999999999999999999999999999998 8888899975 6765 8999999999999999
Q ss_pred C-cccCCccccee
Q 010430 304 G-LVLPPRVASVQ 315 (511)
Q Consensus 304 G-~~lP~~laP~q 315 (511)
| +.||+||+|+|
T Consensus 426 G~i~iP~~LaP~~ 438 (455)
T 2dq0_A 426 GTVRIPKVLWKYT 438 (455)
T ss_dssp SCEECCGGGHHHH
T ss_pred CcEeCChhhCCcc
Confidence 9 99999999999
No 18
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=4.4e-52 Score=441.17 Aligned_cols=303 Identities=15% Similarity=0.157 Sum_probs=267.1
Q ss_pred CCCcc-ccccceeecceecccCChhhhHHHhhhccceeeeee-----eceeEEeccchHHHHHHHHHHHHHHHHhcceee
Q 010430 16 GGKKK-EVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYD-----ISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQN 89 (511)
Q Consensus 16 ~~~~~-~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~~-----~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~e 89 (511)
|.|++ +...+|.||.+.. -...++| +|.++.+++|+.. ++|+++|+|.|++|+++|++++++.+.++||++
T Consensus 146 g~~e~~dn~~vr~~g~~~~-~~~rdH~--eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~E 222 (522)
T 3vbb_A 146 SNDEDVDNKVERIWGDCTV-RKKYSHV--DLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIP 222 (522)
T ss_dssp CSCHHHHCEEEEEESCSSC-CCSCCHH--HHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCcccCcEEEEEeCCCCC-CCccCHH--HHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 45777 7889999998732 2335666 7788999999853 589999999999999999999999999999999
Q ss_pred eeeecccChhhhhhhhhcccCCCcceeeEeccCCC----CCCCceeecCCCccccchhhhhhhhcCCCCccccccccceE
Q 010430 90 CYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGES----DLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVV 165 (511)
Q Consensus 90 v~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~----~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vf 165 (511)
|.||.|++.++|. .+|||+.|.++||++++.|.+ ..+++++|+||+|++++.+|++++.||++||+|++++++||
T Consensus 223 V~~P~lv~~el~~-~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cF 301 (522)
T 3vbb_A 223 IYTPFFMRKEVMQ-EVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCF 301 (522)
T ss_dssp EECCSEEEHHHHH-HHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEE
T ss_pred EECCcccchHHHh-hcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccc
Confidence 9999999999995 799999999999999875311 12468999999999999999999999999999999999999
Q ss_pred eeeec----CCCCcccchhhhcccCcccccChhh--hHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeE
Q 010430 166 RWEFS----NPTPFIRSREFLWQEGHTAFATKSE--ADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTV 239 (511)
Q Consensus 166 R~E~~----~~~Gl~R~REF~q~e~~~~~~~~e~--a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~i 239 (511)
|+|.+ +++||+|+|||+|.|+|+ +|++++ +++++..|++++.+||+.|| +||++...+..+.+.+|.++++|
T Consensus 302 R~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~~e~il~~LG-Lpyrvv~l~tgdlg~~asktyDi 379 (522)
T 3vbb_A 302 RQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMITTAEEFYQSLG-IPYHIVNIVSGSLNHAASKKLDL 379 (522)
T ss_dssp CSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGCCTTCSEEEEE
T ss_pred cCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHHHHHHHHHHHcC-CceEEEEcCCccCCCchhheece
Confidence 99983 578999999999999998 888887 99999999999999999998 89999888888999999999999
Q ss_pred EEeecCCCcccccccccccccccccceeeEEeCC---CCceeeeeee-cccc-ccceeeEEEEEeeCCCCcccCCcccce
Q 010430 240 EAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENE---KGEKAMAWQN-SWAY-TTRTIGVMVMVHGDDKGLVLPPRVASV 314 (511)
Q Consensus 240 e~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~---~g~~~~v~~~-~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP~ 314 (511)
|+|+|+.++..+++++++++++++++++++|.+. +|+.+++|+. ++|+ ++|+|++|+|+|++++|+++|+.|+|+
T Consensus 380 E~w~P~~~~y~EIsScSnc~DyqArr~~iry~~~~~~~~k~~~vhtlNgs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py 459 (522)
T 3vbb_A 380 EAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEF 459 (522)
T ss_dssp EEEETTTTEEEEEEEEEECTTHHHHHHTCEESCC---CCCCCBCEEEEEEEEEHHHHHHHHHHHHBCSSEEECCHHHHTT
T ss_pred eEecCCCCceeEEEEecCCCCCccceeeeEEccccccCCCeeeceEEeccchHHHHHHHHHHHhCCCCCCeecChHhcCe
Confidence 9999998888999999999999999999999875 6777899985 5776 899999999999999999999999999
Q ss_pred eE----EEEeeccC
Q 010430 315 QV----IVVPVPYK 324 (511)
Q Consensus 315 qV----~Iipi~~~ 324 (511)
.. .|||+..+
T Consensus 460 ~~~~~~~~ip~~~~ 473 (522)
T 3vbb_A 460 MPPGLQELIPFVKP 473 (522)
T ss_dssp SCTTSSSEEECCSC
T ss_pred eCCCcceEeecCCC
Confidence 88 79999753
No 19
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=1e-50 Score=432.10 Aligned_cols=294 Identities=16% Similarity=0.160 Sum_probs=261.9
Q ss_pred CCccccccceeecceecccCC-hhhhHHHhhhccceeeee-----eeceeEEeccchHHHHHHHHHHHHHHHHhcceeee
Q 010430 17 GKKKEVKKETGLGLSYKKDEN-FGEWYSEVVVNGEMIEYY-----DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNC 90 (511)
Q Consensus 17 ~~~~~~~~~r~~g~~~~~~~~-~~~~~~~~~~~a~~~d~~-----~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev 90 (511)
||+++...+|.+|.+....+. .++| +|.++++++|+. .++|+++|+|.|++++++|++++++.+.++||++|
T Consensus 164 g~e~~n~~v~~~g~~~~~~f~~~dH~--~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV 241 (501)
T 1wle_A 164 GDESQARVLHVVGDKPAFSFQPRGHL--EIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPM 241 (501)
T ss_dssp SSGGGCEEEEEESCCCCCSSCCCCHH--HHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCeEEEEeCCCCCCCCCCCCHH--HHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 477766779999986333323 2344 678889999985 25899999999999999999999999999999999
Q ss_pred eeecccChhhhhhhhhcccCCCc-ceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeee
Q 010430 91 YFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEF 169 (511)
Q Consensus 91 ~tP~l~~~~l~~~~sg~~~~f~~-emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~ 169 (511)
.||.|++.++| ..+||++.|.+ +||++++.+ +++++|+||+|++++.+|++++.||++||+|++|+++|||+|.
T Consensus 242 ~~P~lv~~~l~-~~sG~~~~f~e~emf~v~~~~----~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea 316 (501)
T 1wle_A 242 TVPDLLRGVVF-EGCGMTPNAKPSQIYNIDPSR----FEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAET 316 (501)
T ss_dssp ECCSEECHHHH-HHHTCCSSSSSCSSCBBCTTT----SSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCC
T ss_pred eCCccccHHHH-HhhcCCCccCccccEEEecCC----CCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCC
Confidence 99999999999 57999999998 999998764 3789999999999999999999999999999999999999998
Q ss_pred c---CCCCcccchhhhcccCcccccCh--hhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeec
Q 010430 170 S---NPTPFIRSREFLWQEGHTAFATK--SEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIP 244 (511)
Q Consensus 170 ~---~~~Gl~R~REF~q~e~~~~~~~~--e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p 244 (511)
+ +++||+|+|||+|.|+|+ +|++ +++++++..|++++.+||+.|| +||++...+..+.+.++.+++++|+|+|
T Consensus 317 ~~G~d~~GL~RvhqF~kvE~~~-f~~pe~e~s~~~~e~~l~~~~~il~~Lg-Lpyrvv~l~tgdlg~~a~~~~DiE~w~p 394 (501)
T 1wle_A 317 DTGKEPWGLYRVHHFTKVEMFG-VTGPGLEQSSELLEEFLSLQMEILTELG-LHFRVLDMPTQELGLPAYRKFDIEAWMP 394 (501)
T ss_dssp SCC--CCSSSSCSEEEEEEEEE-EECSSHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGSTTTCSEEEEEEEEET
T ss_pred CCCCCCcCceeeeeeeeeeEEE-EeCCcHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEccCcccCCchhheecHhhccc
Confidence 6 578999999999999999 6666 6999999999999999999998 8999877777888888999999999999
Q ss_pred CCCcccccccccccccccccceeeEEeCCCCceeeeee-ecccc-ccceeeEEEEEeeCCCC-cccCCccccee-EEEE
Q 010430 245 NTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQ-NSWAY-TTRTIGVMVMVHGDDKG-LVLPPRVASVQ-VIVV 319 (511)
Q Consensus 245 ~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~-~~~Gi-~eRli~~Lie~~~d~~G-~~lP~~laP~q-V~Ii 319 (511)
+.++..+++++++++++++++|+++|.+.+|+.+++|+ +++|+ ++|+|++|+|+|++++| +.||++|+|++ +-+|
T Consensus 395 ~~~~~~Ei~s~sn~~DfqarR~~iry~~~~gk~~~vHtlngSglav~R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 395 GRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp TTTEEEEEEEEEECTTHHHHHHTCEEECSSSCEEECEEEEEEEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred ccccceeEEeccccccchhhhcCcEEECCCCCEEEEEEECCccchHHHHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 87888999999999999999999999998898889997 36666 89999999999999999 99999999998 4444
No 20
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=1.9e-50 Score=424.30 Aligned_cols=287 Identities=15% Similarity=0.164 Sum_probs=256.0
Q ss_pred CCCccccccceeecceecccCC-hhhhHHHhhhccceeeeee-----eceeEEeccchHHHHHHHHHHHHHHHHhcceee
Q 010430 16 GGKKKEVKKETGLGLSYKKDEN-FGEWYSEVVVNGEMIEYYD-----ISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQN 89 (511)
Q Consensus 16 ~~~~~~~~~~r~~g~~~~~~~~-~~~~~~~~~~~a~~~d~~~-----~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~e 89 (511)
-||+++++++|+||.+...+.. .++| +|.++.+++| .. ++|+++|+|.|++++++|++++++.+.++||++
T Consensus 111 ~g~e~~n~~~~~~g~~~~~~~~~~~H~--~lg~~l~l~d-~~~~~~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~e 187 (421)
T 1ses_A 111 VGGEEANREIKRVGGPPEFSFPPLDHV--ALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLP 187 (421)
T ss_dssp SSSGGGCEEEEEESCCCCCSSCCCCHH--HHHHHHTCBC-TTHHHHHCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCccccEEEEEeCCCCccCCCCCCHH--HHHHHcCccc-cccccccCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 3599999999999986222222 2344 6678888998 53 589999999999999999999999999999999
Q ss_pred eeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeee
Q 010430 90 CYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEF 169 (511)
Q Consensus 90 v~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~ 169 (511)
|.||+|++.++|. .+||++.|.++||++++ ++++|+||+|++++.+|++++.||++||+|++|+|+|||+|.
T Consensus 188 v~tP~l~~~~l~~-~sG~~~~f~~emy~~~d-------~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~ 259 (421)
T 1ses_A 188 MTLPSYAREKAFL-GTGHFPAYRDQVWAIAE-------TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEA 259 (421)
T ss_dssp EECCSEEEHHHHH-HHTCTTTTGGGSCBBTT-------SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCC
T ss_pred EeCCceecHHHHH-hcCCCCcCchhcEEEcC-------CeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCc
Confidence 9999999999995 68999999999999863 679999999999999999999999999999999999999998
Q ss_pred ----cCCCCcccchhhhcccCcccccCh--hhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEee
Q 010430 170 ----SNPTPFIRSREFLWQEGHTAFATK--SEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFI 243 (511)
Q Consensus 170 ----~~~~Gl~R~REF~q~e~~~~~~~~--e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~ 243 (511)
+|++||+|+|||+|.|+|+ ++++ +++++++..+++++.++|+.|| +||++...+..+.+.++.+++++|+|+
T Consensus 260 g~~Gr~~~GL~R~rqF~q~E~~~-f~~p~~e~s~~~~~e~~~~~~~il~~LG-L~~rvv~l~t~dlg~~a~~~~DiE~w~ 337 (421)
T 1ses_A 260 GSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENAEEILRLLE-LPYRLVEVATGDMGPGKWRQVDIEVYL 337 (421)
T ss_dssp SCCCSCCCTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCHHHHCTTCSEEEEEEEEE
T ss_pred cccCcCCCCCeeeeeeeeeeEEE-EeCCCHHHHHHHHHHHHHHHHHHHHHCC-CceEEEEecCccCCchhhhcccHhhee
Confidence 7899999999999999999 7777 8999999999999999999998 898876655567777888999999999
Q ss_pred cCCCcccccccccccccccccceeeEEeCCCCceeeeee-ecccc-ccceeeEEEEEeeCCCC-cccCCccccee
Q 010430 244 PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQ-NSWAY-TTRTIGVMVMVHGDDKG-LVLPPRVASVQ 315 (511)
Q Consensus 244 p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~-~~~Gi-~eRli~~Lie~~~d~~G-~~lP~~laP~q 315 (511)
|+.+...+++++++++++++++|+++|.+.+|+..++|+ ++.|+ ++|+|++|+|+|++++| ++||++|+|+.
T Consensus 338 p~~~~~~ei~s~s~~~Dfqarr~~i~y~~~~~~~~~vhtlngs~lav~R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 338 PSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp TTTTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred chhccchheeeccccchhhhhhhcCEeECCCCCEEEEEecCCccchHHHHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 987777788888888888899999999998888889995 35555 89999999999999999 99999999997
No 21
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=8.1e-51 Score=428.67 Aligned_cols=298 Identities=14% Similarity=0.099 Sum_probs=265.4
Q ss_pred CCCccccccceeecceec--------ccCC---hhhhHHHhhhccceeeee-----eeceeEEeccchHHHHHHHHHHHH
Q 010430 16 GGKKKEVKKETGLGLSYK--------KDEN---FGEWYSEVVVNGEMIEYY-----DISGCYIIRPWAMSIWETMQKFFD 79 (511)
Q Consensus 16 ~~~~~~~~~~r~~g~~~~--------~~~~---~~~~~~~~~~~a~~~d~~-----~~~G~~~~~P~g~~i~~~I~~~~~ 79 (511)
|.|+++...+|.||.+.. ...+ .++| +|.++.+++|+. +++|+++|+|.|++|+++|+++++
T Consensus 119 g~~e~~n~~v~~~g~~~~~~~~~~~~~~~~~~~~dH~--elg~~l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~ 196 (485)
T 3qne_A 119 SQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHH--EVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGL 196 (485)
T ss_dssp CSCGGGCEEEEEECCTTCCSSSSBCTTTCCBCCSCHH--HHHHHTTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHH
T ss_pred CCCccCCEEEEEeCCCCccccccccccccCCCccCHH--HHHhhcCCcccccccccccceeEEEecHHHHHHHHHHHHHH
Confidence 557888889999998731 1113 3555 778889999985 367999999999999999999999
Q ss_pred HHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhc--CCCCccc
Q 010430 80 AEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRG--HRDLPLK 157 (511)
Q Consensus 80 ~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s--~r~LPlk 157 (511)
+.+.++||++|.||.|++.++|. .+||++.|.++||++++. +++++|+||+|.+++.++++++.+ |++||+|
T Consensus 197 d~~~~~Gy~eV~~P~lv~~~l~~-~sG~l~~f~eemf~v~~~-----~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr 270 (485)
T 3qne_A 197 SFLSSKGYVPLQAPVMMNKEVMA-KTAQLSQFDEELYKVIDG-----EDEKYLIATSEQPISAYHAGEWFESPAEQLPVR 270 (485)
T ss_dssp HHHHTTTCEEEECCSEEEHHHHH-HHSCHHHHTTTCCEEEET-----TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEE
T ss_pred HHHHHcCCEEEeCCccccHHHHh-hcCCccccccceEEEeCC-----CCeEEEeccccHHHHHHHhccccccchhcCCee
Confidence 99999999999999999999995 799999999999999874 368999999999999999999887 9999999
Q ss_pred cccccceEeeeecC----CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCc
Q 010430 158 LNQWCNVVRWEFSN----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGG 233 (511)
Q Consensus 158 l~q~g~vfR~E~~~----~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga 233 (511)
+++|++|||+|.++ ++||+|+|||+|.|+|+ +|+++++++++..|++++.+||+.|| +||++...+..+.+.+|
T Consensus 271 ~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~e~il~~Lg-Lpyrvv~~~tgdlg~~a 348 (485)
T 3qne_A 271 YAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCSEEFYQSLG-LPYRVVGIVSGELNNAA 348 (485)
T ss_dssp EEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGCCTTC
T ss_pred EEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCCcccCCch
Confidence 99999999999853 68999999999999999 78999999999999999999999998 89999988888999999
Q ss_pred cceeeEEEeecCCCcccccccccccccccccceeeEEeCC---CCceeeeeee-cccc-ccceeeEEEEEeeCCCCcccC
Q 010430 234 LYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENE---KGEKAMAWQN-SWAY-TTRTIGVMVMVHGDDKGLVLP 308 (511)
Q Consensus 234 ~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~---~g~~~~v~~~-~~Gi-~eRli~~Lie~~~d~~G~~lP 308 (511)
.++++||+|+|+.++..++++++++++++|++++++|.+. +|+.+++|+. ++|+ ++|+|++|+|+|+|++|+++|
T Consensus 349 ~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~~~vhtlNgt~lav~R~l~AiLEn~q~~dGi~iP 428 (485)
T 3qne_A 349 AKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDGLVIP 428 (485)
T ss_dssp SEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC------CCCBCEEEEEEEEEHHHHHHHHHHHSEETTEEECC
T ss_pred hhheeeeEeccCCCceeEEEEecCCcCccccccceEEecccccCCCceeeEEEecchhHHHHHHHHHHHhcCCCCceecC
Confidence 9999999999998888899999999999999999999976 5677899985 5776 899999999999999999999
Q ss_pred CcccceeE---EEEeecc
Q 010430 309 PRVASVQV---IVVPVPY 323 (511)
Q Consensus 309 ~~laP~qV---~Iipi~~ 323 (511)
+.|+|+.. .+||+..
T Consensus 429 ~~L~py~~g~~~~i~~~~ 446 (485)
T 3qne_A 429 EVLRKYIPGEPEFIPYIK 446 (485)
T ss_dssp HHHHTTSTTCCSEEECCC
T ss_pred hhhcCccCCcceEeeccc
Confidence 99999974 6788864
No 22
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=6.8e-50 Score=420.94 Aligned_cols=293 Identities=15% Similarity=0.175 Sum_probs=255.7
Q ss_pred CCCCccccccceeecceecccCChhh-hHHHhhhccceeeeee-----eceeEEeccchHHHHHHHHHHHHHHHHhccee
Q 010430 15 GGGKKKEVKKETGLGLSYKKDENFGE-WYSEVVVNGEMIEYYD-----ISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQ 88 (511)
Q Consensus 15 ~~~~~~~~~~~r~~g~~~~~~~~~~~-~~~~~~~~a~~~d~~~-----~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ 88 (511)
-|.|+++...+|.+|.+ +..+|+. +..+|.++.+++|+.. ++|+++|+|.|++++++|++++++.+.++||+
T Consensus 115 ~g~~e~~n~~~~~~g~~--~~~~f~~~~H~~l~~~l~l~d~~~~~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ 192 (425)
T 2dq3_A 115 VGEDEKDNVEVRRWGEP--RKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYK 192 (425)
T ss_dssp CCSSGGGCEEEEEESCC--CCCSSCCCCHHHHHHHTTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCCccCcEEEEEeCCC--CCCCCCcccHHHHHhhCCeEEecccccccCCCceEECcHHHHHHHHHHHHHHHHHHHcCCE
Confidence 45677888899999986 3444432 3347788889999854 59999999999999999999999999999999
Q ss_pred eeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeee
Q 010430 89 NCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWE 168 (511)
Q Consensus 89 ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E 168 (511)
+|.||+|++.++|. .+||++.|.++||++++ +.++||||+|++++++|++++.++++||+|++|+|+|||+|
T Consensus 193 ev~tP~l~~~~l~~-~sG~~~~f~~emy~~~~-------~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E 264 (425)
T 2dq3_A 193 EICPPHLVKPEILI-GTGQLPKFEEDLYKCER-------DNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRRE 264 (425)
T ss_dssp EEECCSEECHHHHH-HHSCTTTTGGGSCBCTT-------TCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCC
T ss_pred EEECCccccHHHHH-hcCCCCcChhhheEecC-------CeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCC
Confidence 99999999999995 68999999999999862 68999999999999999999999999999999999999999
Q ss_pred ec----CCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeec
Q 010430 169 FS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIP 244 (511)
Q Consensus 169 ~~----~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p 244 (511)
.+ +++||+|+|||+|.|+|+ +++++++++++..+++++.++|+.|| +||.+...+..+.+.++.+++++|+|+|
T Consensus 265 ~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~~~il~~LG-L~~rvv~l~~gdlg~~a~~~~diE~w~p 342 (425)
T 2dq3_A 265 AGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDAEEVLQLLG-LPYRVVELCTGDLGFSAAKTYDIEVWFP 342 (425)
T ss_dssp CSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHHHT-CCEEEEECCTTTCCTTCSEEEEEEEEEG
T ss_pred CCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHHHHHHHHCC-CceEEEEecCCcCCChHHhccchhhccc
Confidence 74 478999999999999998 88888999999999999999999998 8987555555667777889999999999
Q ss_pred CCCcccccccccccccccccceeeEEeCCC-Cceeeeeeecccc---ccceeeEEEEEeeCCCC-cccCCccccee-EEE
Q 010430 245 NTGRGIQGATSHCLGQNFSKMFEIIFENEK-GEKAMAWQNSWAY---TTRTIGVMVMVHGDDKG-LVLPPRVASVQ-VIV 318 (511)
Q Consensus 245 ~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~-g~~~~v~~~~~Gi---~eRli~~Lie~~~d~~G-~~lP~~laP~q-V~I 318 (511)
+.+...++.++.++++.++++|+++|.+.+ |+..++| +++|+ ++|+|++|+|+|++++| ++||+||+|+| +.+
T Consensus 343 ~~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~~~k~~~vH-tl~Gs~~av~R~i~allE~~~~~~G~i~iP~~L~P~~~~~~ 421 (425)
T 2dq3_A 343 SQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVH-TLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYVGTDV 421 (425)
T ss_dssp GGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECE-EEEEEEEEHHHHHHHHHHHTBCTTSCEECCTTTHHHHSCSE
T ss_pred hhHHHHHHHHcCCccccCcccCCeEEECCCCCeeEEEE-EEeccccHHHHHHHHHHHhCCCCCCCEecCccccCccCccc
Confidence 866655666666666667999999999987 5667999 77887 89999999999999999 99999999999 666
Q ss_pred Ee
Q 010430 319 VP 320 (511)
Q Consensus 319 ip 320 (511)
|+
T Consensus 422 i~ 423 (425)
T 2dq3_A 422 IR 423 (425)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 23
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=3.1e-49 Score=417.79 Aligned_cols=334 Identities=15% Similarity=0.127 Sum_probs=264.5
Q ss_pred eeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhc-ccCCCcceeeEeccCCCCCCCceee
Q 010430 54 YYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVPIAI 132 (511)
Q Consensus 54 ~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~-~~~f~~emy~~~~~g~~~l~~~l~L 132 (511)
+..++|+++|+|.++++|++|++.++++++++||++|.||+|++.++|.++.|| ++.+.++||.|+|.+ ++.++|
T Consensus 3 ~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~----g~~l~L 78 (421)
T 1h4v_B 3 ARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG----GRSLTL 78 (421)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC----CCEEee
Confidence 457899999999999999999999999999999999999999999999765587 899999999999987 599999
Q ss_pred cCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHh
Q 010430 133 RPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 212 (511)
Q Consensus 133 RPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~ 212 (511)
||+.|+++++++..+..+++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+|+.+.+.+++|++ .++.++|+
T Consensus 79 rpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e-~p~~g--R~REf~Q~g~e~~g~~~~~ad~e~i---~~~~~~l~ 152 (421)
T 1h4v_B 79 RPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAE-RPQKG--RYRQFHQVNYEALGSENPILDAEAV---VLLYECLK 152 (421)
T ss_pred CCcchHHHHHHHHhccccccCCCeEEEEecCeecCC-CCCCC--CcccEEEccEEEECCCChhhhHHHH---HHHHHHHH
Confidence 999999999999988778889999999999999999 78888 9999999999999888888888865 45688888
Q ss_pred hhhccc-cc--cccc------------------------c--cccccc--------------Cccc----eee-------
Q 010430 213 EFLAVP-VI--KGKK------------------------S--ELEKFA--------------GGLY----TTT------- 238 (511)
Q Consensus 213 ~lg~ip-~~--~g~~------------------------~--~~ek~~--------------ga~y----~~~------- 238 (511)
.+| ++ +. ++.. + .++.+. .+.+ .++
T Consensus 153 ~lg-l~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 231 (421)
T 1h4v_B 153 ELG-LRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGE 231 (421)
T ss_pred HcC-CCceEEEEcCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhH
Confidence 887 43 22 1110 0 000000 0000 011
Q ss_pred -----------------EEEee-cCCCcccc--ccccccc-----ccccccceeeEEeCC----CCceeeeeeecccccc
Q 010430 239 -----------------VEAFI-PNTGRGIQ--GATSHCL-----GQNFSKMFEIIFENE----KGEKAMAWQNSWAYTT 289 (511)
Q Consensus 239 -----------------ie~~~-p~~gr~lq--~gt~~~l-----g~~~s~~f~i~y~~~----~g~~~~v~~~~~Gi~e 289 (511)
+...+ +++.|+++ +|++|+. |...+..-+.+|++. .|+..++.+.++| ++
T Consensus 232 ~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa~Gf~ig-ie 310 (421)
T 1h4v_B 232 EARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFG-VE 310 (421)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCeEEEeec-HH
Confidence 11112 34556555 4555542 222344445666432 2344455443444 79
Q ss_pred ceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCccccc
Q 010430 290 RTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMK 369 (511)
Q Consensus 290 Rli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~ 369 (511)
|++++|.++ | .+|||.+|.||+|+|++ ++..++|.+|++.||++ ++|++|+++ .++|+||++|++.
T Consensus 311 Rl~~~l~e~-----~-~~~~~~~p~~v~i~~~~------~~~~~~a~~l~~~Lr~~-i~v~~d~~~-~~~~~~~~~a~~~ 376 (421)
T 1h4v_B 311 RVALALEAE-----G-FGLPEEKGPDLYLIPLT------EEAVAEAFYLAEALRPR-LRAEYALAP-RKPAKGLEEALKR 376 (421)
T ss_pred HHHHHHHhc-----C-cCCCCCCCCeEEEEECC------hHHHHHHHHHHHHHHhc-CEEEEecCC-CCHHHHHHHHHhC
Confidence 999999875 3 35667799999999997 34678999999999999 999999987 5999999999999
Q ss_pred CceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHH
Q 010430 370 GVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELL 413 (511)
Q Consensus 370 giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l 413 (511)
|+|++|+||++|+++++|+||+|+++++..|+++++++.++++|
T Consensus 377 g~p~~iivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 377 GAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred CCCEEEEECchHhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998887654
No 24
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=4.6e-50 Score=423.42 Aligned_cols=297 Identities=13% Similarity=0.100 Sum_probs=265.6
Q ss_pred CCCccc-cccceeecceecccCChhhhHHHhhhccceeeee------eeceeEEeccchHHHHHHHHHHHHHHHHhccee
Q 010430 16 GGKKKE-VKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYY------DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQ 88 (511)
Q Consensus 16 ~~~~~~-~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~------~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ 88 (511)
|.|+++ ...+|.||.+. ..+-.++| +|.++.+++|+. +++|+++|+|.|++|+++|++++++.+.++||+
T Consensus 152 g~~e~~~n~~v~~~g~~~-~~~~rdH~--~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~ 228 (484)
T 3lss_A 152 AQDEETGNTVVRTFGNTT-KRAKLNHV--SIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYT 228 (484)
T ss_dssp CSCHHHHCEEEEEESCTT-CCCSSCHH--HHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CCCcccCcEEEEecCCCC-CCCCCCHH--HHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcCCE
Confidence 446666 78999999873 32335666 778889999985 367899999999999999999999999999999
Q ss_pred eeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeee
Q 010430 89 NCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWE 168 (511)
Q Consensus 89 ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E 168 (511)
+|.||.|.+.++|. .+|||+.|.++||++++. +++++|+||+|++++.+|++++.||++||+|++++++|||+|
T Consensus 229 eV~~P~lv~~~l~~-~sG~~~~f~e~mf~v~~~-----~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~E 302 (484)
T 3lss_A 229 PFYPPFFLNRDVMG-EVAQLSQFDEELYQVSGD-----GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKE 302 (484)
T ss_dssp EEECCSEEEHHHHH-HHSCHHHHHHTCCEEESS-----SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCC
T ss_pred EEecCccccHHHHH-hcCCcccccccceEeecC-----CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCC
Confidence 99999999999995 799999999999999864 378999999999999999999999999999999999999999
Q ss_pred ec----CCCCcccchhhhcccCcccccChhh--hHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEe
Q 010430 169 FS----NPTPFIRSREFLWQEGHTAFATKSE--ADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAF 242 (511)
Q Consensus 169 ~~----~~~Gl~R~REF~q~e~~~~~~~~e~--a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~ 242 (511)
++ .++||+|+|||+|.|+|+ ||++++ +++++..|++++.+||+.|| +||++...+..+.+.+|.++++||+|
T Consensus 303 ags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~~~~e~il~~LG-Lpyrvv~l~tgdlg~~a~~~yDiE~w 380 (484)
T 3lss_A 303 AGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMITTSEEFNKSLG-LPYRVVNICSGALNNAAAKKYDLEAW 380 (484)
T ss_dssp TTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHHHHHHHHHT-CCEEEEECCTTTCCSSCSEEEEEEEE
T ss_pred CCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHHHHHHHHHHHcC-CcEEEEEcCCcccCCchhheechhee
Confidence 83 357999999999999998 889988 99999999999999999998 89998887778888899999999999
Q ss_pred ecCCCcccccccccccccccccceeeEEeCCC------Cceeeeeee-cccc-ccceeeEEEEEeeCCCCcccCCcccce
Q 010430 243 IPNTGRGIQGATSHCLGQNFSKMFEIIFENEK------GEKAMAWQN-SWAY-TTRTIGVMVMVHGDDKGLVLPPRVASV 314 (511)
Q Consensus 243 ~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~------g~~~~v~~~-~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP~ 314 (511)
+|+.++..+++++++++++++++++++|.+.+ |+.+++|+. +.|+ ++|+|++|+|+|++++|+++|+.|+|+
T Consensus 381 ~P~~~~~~EIsS~Snc~dyqArr~~iry~~~~~~~~~~~~~~~vhtlNgt~~av~R~l~AiLEn~q~~dGi~iP~~L~py 460 (484)
T 3lss_A 381 FPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPY 460 (484)
T ss_dssp ETTTTEEEEEEEEEECTTHHHHHHTCEESSCCC----CCSCEECEEEEEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGG
T ss_pred cCCCCCeeEEEEecCcccccccccceEEeccccccccCCCceeeeEEeccchHHHHHHHHHHHhcCCCCCeeCChhhcCc
Confidence 99988889999999999999999999998763 566799984 3555 799999999999999999999999999
Q ss_pred e--EEEEeecc
Q 010430 315 Q--VIVVPVPY 323 (511)
Q Consensus 315 q--V~Iipi~~ 323 (511)
. +-+||...
T Consensus 461 m~g~~~i~~~~ 471 (484)
T 3lss_A 461 MMGIEMIRFEN 471 (484)
T ss_dssp TTTCCEEECCC
T ss_pred cCCcceeecCc
Confidence 7 77788764
No 25
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=1.4e-49 Score=420.32 Aligned_cols=330 Identities=19% Similarity=0.209 Sum_probs=249.0
Q ss_pred eeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhh-hcccCCCcceeeEeccCCCCCCCceeec
Q 010430 55 YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEK-DHIEGFAPEVAWVTKSGESDLEVPIAIR 133 (511)
Q Consensus 55 ~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~s-g~~~~f~~emy~~~~~g~~~l~~~l~LR 133 (511)
..++|+++|+|.++++|++|++++++.+.++||++|.||+|++.++|.+.. ||++.|.++||.|+|.+ ++.++||
T Consensus 3 ~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~----g~~~~Lr 78 (420)
T 1qe0_A 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG----DRSITLR 78 (420)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHH----HCCEEEC
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCC----CCEEEeC
Confidence 468999999999999999999999999999999999999999999996532 89999999999999876 4899999
Q ss_pred CCCccccchhhhhhhhcC-CCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHh
Q 010430 134 PTSETVMYPYYSKWIRGH-RDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 212 (511)
Q Consensus 134 Pt~e~~~~~~~~~~~~s~-r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~ 212 (511)
||+|++++++++++..|| ++||+|+||+|+|||+| +|+.| |+|||+|.|+|+|+.+.+.+++|++. ++.++|+
T Consensus 79 p~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E-~~~~g--R~reF~q~~~e~~~~~~~~~d~e~i~---~~~~~l~ 152 (420)
T 1qe0_A 79 PEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYE-RKQKG--RYRQFNQFGVEAIGAENPSVDAEVLA---MVMHIYQ 152 (420)
T ss_dssp SCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC----------CCEEEEEEEEEESCCCHHHHHHHHH---HHHHHHH
T ss_pred CCChHHHHHHHHhccccccCCCCeEEEEecCEeecC-CCcCC--CcccEEEeeEEEECCCCchhHHHHHH---HHHHHHH
Confidence 999999999999999999 99999999999999999 67777 99999999999988888888866654 4589999
Q ss_pred hhhccc-ccc--ccc------cc----cccccCc------------------------------cc--ee----------
Q 010430 213 EFLAVP-VIK--GKK------SE----LEKFAGG------------------------------LY--TT---------- 237 (511)
Q Consensus 213 ~lg~ip-~~~--g~~------~~----~ek~~ga------------------------------~y--~~---------- 237 (511)
.+| ++ +.+ +.. .. .+++.+. .. .+
T Consensus 153 ~lg-l~~~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~ 231 (420)
T 1qe0_A 153 SFG-LKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEES 231 (420)
T ss_dssp HTT-CCCEEEEEEECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTH
T ss_pred HcC-CCceEEEEcccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHH
Confidence 998 55 322 110 00 0000000 00 00
Q ss_pred --------------eEEEee-cCCCcccc--ccccccc--------ccccccceeeEEeCC---C-Cceeeeeeecccc-
Q 010430 238 --------------TVEAFI-PNTGRGIQ--GATSHCL--------GQNFSKMFEIIFENE---K-GEKAMAWQNSWAY- 287 (511)
Q Consensus 238 --------------~ie~~~-p~~gr~lq--~gt~~~l--------g~~~s~~f~i~y~~~---~-g~~~~v~~~~~Gi- 287 (511)
.+...+ |++.|++. +|++|++ |..-+...+.+|..- . |+..|+. +||+
T Consensus 232 ~~~l~~l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~v--g~~ig 309 (420)
T 1qe0_A 232 KAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGI--GFALS 309 (420)
T ss_dssp HHHHHHHHHHHHHHTCCCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEEE--EEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCEE--EEEec
Confidence 011112 44555555 3555542 212244456677542 2 3444553 6666
Q ss_pred ccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCccc
Q 010430 288 TTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWE 367 (511)
Q Consensus 288 ~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae 367 (511)
++|++++| ++ .|+.||+ ++|+||+|+|++ ++..++|.+|++.||++|++|++|+++ .++|+||++|+
T Consensus 310 veRl~~~l-e~----~~~~~p~-~~p~~v~i~~~~------~~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~~~~~a~ 376 (420)
T 1qe0_A 310 IERLLLAL-EE----EGIELDI-EENLDLFIVTMG------DQADRYAVKLLNHLRHNGIKADKDYLQ-RKIKGQMKQAD 376 (420)
T ss_dssp HHHHHHHH-HH----TTCCCCC-CCCCSEEEEECH------HHHHHHHHHHHHHHHTTTCCEEECCSC-CCHHHHHHHHH
T ss_pred HHHHHHHH-Hh----cCCCCCC-CCCCeEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHH
Confidence 79999987 53 3678888 899999999997 356789999999999999999999987 59999999999
Q ss_pred ccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHH
Q 010430 368 MKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIK 410 (511)
Q Consensus 368 ~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~ 410 (511)
+.|+|++|+||++|+++++|+||+|+++++..|+++++++.|+
T Consensus 377 ~~g~p~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 377 RLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp HTTCSEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred HcCCCEEEEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 9999999999999999999999999999999999999988764
No 26
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=9.5e-50 Score=426.05 Aligned_cols=338 Identities=16% Similarity=0.173 Sum_probs=263.3
Q ss_pred eeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhc-ccCCCcceeeEeccCCCCCCCc
Q 010430 51 MIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVP 129 (511)
Q Consensus 51 ~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~-~~~f~~emy~~~~~g~~~l~~~ 129 (511)
+..+.+++|+++|+|.++.+|+.|++++++.++++||++|.||+|++.++|.+..|| ++.+.++||.|.|.++ ++.
T Consensus 29 ~~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~---g~~ 105 (467)
T 4e51_A 29 LEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALN---GEN 105 (467)
T ss_dssp -CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTT---CCE
T ss_pred hcCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCC---CCE
Confidence 345678999999999999999999999999999999999999999999999765598 7778999999998761 389
Q ss_pred eeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHH
Q 010430 130 IAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 209 (511)
Q Consensus 130 l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~ 209 (511)
++|||++|++++++++.+..+| ++|+|+||+|+|||+| +|+.| |+|||+|+|+|+|+.+...+++|++. ++.+
T Consensus 106 l~LRPd~t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E-~~~~g--R~ReF~Q~d~ei~g~~~~~adaEvi~---l~~~ 178 (467)
T 4e51_A 106 LTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYRQFHQVGVEALGFAGPDADAEIVM---MCQR 178 (467)
T ss_dssp EEECSCSHHHHHHHHHHTTTTT-TSCEEEEEEEEEECCC-CC-----CCSEEEEEEEEEETCCCSHHHHHHHH---HHHH
T ss_pred EEeCcccHHHHHHHHHHccccc-CCCEEEEEEccEEccC-CCCCC--CcCceEEEEEEEEeCCChHHHHHHHH---HHHH
Confidence 9999999999999999998888 6999999999999999 57788 99999999999988887788877654 4589
Q ss_pred HHhhhhcccccc--cccc----------------------------------c---cc-c-------ccCcc--------
Q 010430 210 IYEEFLAVPVIK--GKKS----------------------------------E---LE-K-------FAGGL-------- 234 (511)
Q Consensus 210 i~~~lg~ip~~~--g~~~----------------------------------~---~e-k-------~~ga~-------- 234 (511)
+|+.||+-++.+ +... . ++ + ...+.
T Consensus 179 ~l~~lGl~~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~ 258 (467)
T 4e51_A 179 LWEDLGLTGIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGD 258 (467)
T ss_dssp HHHHHTCCCEEEEEEECCCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCH
T ss_pred HHHHcCCCceEEEEeCCCchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhH
Confidence 999988312321 1100 0 00 0 00000
Q ss_pred -------------ceeeEEEee-cCCCcccc--cccccc-----cccccccceeeEEeCC---C-Cceeeeeeecccccc
Q 010430 235 -------------YTTTVEAFI-PNTGRGIQ--GATSHC-----LGQNFSKMFEIIFENE---K-GEKAMAWQNSWAYTT 289 (511)
Q Consensus 235 -------------y~~~ie~~~-p~~gr~lq--~gt~~~-----lg~~~s~~f~i~y~~~---~-g~~~~v~~~~~Gi~e 289 (511)
....+...+ |++.|++. +|++|+ +|...+...+.||+.- . |+..|+.+.++| ++
T Consensus 259 ~~~~~l~~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~PavGfa~g-le 337 (467)
T 4e51_A 259 VSRAHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAMG-IE 337 (467)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCEEEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCceeehHH-HH
Confidence 001122223 67778877 577775 2333345567777532 2 345577666666 69
Q ss_pred ceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCC----CCCCCCCCCCc
Q 010430 290 RTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSR----DNYSPGWKYSH 365 (511)
Q Consensus 290 Rli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~----~~~~lg~k~~~ 365 (511)
|++++|.++ | .+|. ++|.||+|+|++ ++..++|.+|++.||++|++|++|.+ + .++++||++
T Consensus 338 Rl~~~l~~~-----~-~~~~-~~p~~V~Vip~~------~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~-~sl~kq~~~ 403 (467)
T 4e51_A 338 RILELLKEE-----H-LVPE-QEGVDVYVVHQG------DAAREQAFIVAERLRDTGLDVILHCSADGAG-ASFKSQMKR 403 (467)
T ss_dssp HHHHHHHHT-----T-CCCC-CCCCSEEEEECS------HHHHHHHHHHHHHHHHTTCCEEECCCTTSSC-CCHHHHHHH
T ss_pred HHHHHHHhc-----C-Cccc-CCCCeEEEEEcC------hHHHHHHHHHHHHHHHcCCeEEEEccccccc-CCHHHHHHH
Confidence 999988763 2 2444 789999999998 45788999999999999999999998 6 699999999
Q ss_pred ccccCceeEeeeCcccccCCcEEEEEccC-C------CccccccchHHHHHHHHH
Q 010430 366 WEMKGVPLRIEIGPKDLAKNQVRAVRRDN-G------AKVDLPRSSLVERIKELL 413 (511)
Q Consensus 366 ae~~giP~~iivG~~E~e~~~Vtvr~r~~-~------ek~~v~~~el~~~i~~~l 413 (511)
|++.|+||+|+||++|+++|+|+||+|++ + +|..|+++++++.|++.+
T Consensus 404 A~~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 404 ADASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp HHHTTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred HHHcCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 99999999999999999999999999999 8 999999999999887665
No 27
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=2e-49 Score=419.53 Aligned_cols=334 Identities=13% Similarity=0.127 Sum_probs=262.6
Q ss_pred eeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhc-ccCCCcceeeEeccCCCCCCCcee
Q 010430 53 EYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVPIA 131 (511)
Q Consensus 53 d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~-~~~f~~emy~~~~~g~~~l~~~l~ 131 (511)
++..++|+++|+|.++++|++|++.++++++++||++|.||+|++.++|.+++|| ++.+.++||.|+|.+ ++.++
T Consensus 3 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~----g~~l~ 78 (423)
T 1htt_A 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN----GDSLT 78 (423)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTT----SCEEE
T ss_pred CCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCC----CCEEE
Confidence 4568999999999999999999999999999999999999999999999765587 788999999999987 59999
Q ss_pred ecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHH
Q 010430 132 IRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 211 (511)
Q Consensus 132 LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~ 211 (511)
|||+.|+++++++.++ .+++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+|+.+.+.+++|++ .++.++|
T Consensus 79 Lrpd~t~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e-~p~~g--R~Ref~Q~d~e~~g~~~~~ad~e~i---~~~~~~l 151 (423)
T 1htt_A 79 LRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHE-RPQKG--RYRQFHQLGCEVFGLQGPDIDAELI---MLTARWW 151 (423)
T ss_dssp ECSCSHHHHHHHHHHH-TCSTTCCEEEEEEEEEECCC-CCCSS--CCSEEEEEEEEEESCCSHHHHHHHH---HHHHHHH
T ss_pred eCCCchHHHHHHHHhc-ccccCCCeEEEEEcCEecCC-CCCCC--ccceeEEeeEEEECCCCchhhHHHH---HHHHHHH
Confidence 9999999999999876 46789999999999999999 78889 9999999999999988888888874 5568999
Q ss_pred hhhhcc--ccc--cccc---------------------cc-c----cccc--------------Cccc--eeeEEE----
Q 010430 212 EEFLAV--PVI--KGKK---------------------SE-L----EKFA--------------GGLY--TTTVEA---- 241 (511)
Q Consensus 212 ~~lg~i--p~~--~g~~---------------------~~-~----ek~~--------------ga~y--~~~ie~---- 241 (511)
+.+| + ++. ++.. .. + +.+. .+.+ .+++..
T Consensus 152 ~~lg-l~~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~~ 230 (423)
T 1htt_A 152 RALG-ISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDE 230 (423)
T ss_dssp HHHT-CGGGCEEEEEECCCHHHHHHC---------------------------------------------------CCH
T ss_pred HHCC-CCCCcEEEEcCCCChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhhH
Confidence 9998 5 332 1110 00 0 0000 0001 111111
Q ss_pred --------------------ee-cCCCcccc--ccccccc-----ccccccceeeEEeCC----CCceeeeeeecccc-c
Q 010430 242 --------------------FI-PNTGRGIQ--GATSHCL-----GQNFSKMFEIIFENE----KGEKAMAWQNSWAY-T 288 (511)
Q Consensus 242 --------------------~~-p~~gr~lq--~gt~~~l-----g~~~s~~f~i~y~~~----~g~~~~v~~~~~Gi-~ 288 (511)
.+ +++.|+++ +|++|+. |...+..-+.+|++. .|+..++. +||+ +
T Consensus 231 ~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pav--Gf~igv 308 (423)
T 1htt_A 231 ESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV--GFAMGL 308 (423)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEE--EEEEEH
T ss_pred HHHHHHHHHHHHHHHcCCeEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeE--EEEecH
Confidence 11 23445444 3555542 222344556677542 23444554 4555 7
Q ss_pred cceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHc--CceeeecCCCCCCCCCCCCcc
Q 010430 289 TRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEA--GICANMDSRDNYSPGWKYSHW 366 (511)
Q Consensus 289 eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~--Girv~~D~~~~~~lg~k~~~a 366 (511)
+|++++|.++ |. +|++.+|+||+|+|++. +..++|.+|++.||++ |++|++|+++ .++|+||++|
T Consensus 309 eRl~~~l~e~-----~~-~~~~~~p~~v~i~~~~~------~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~-~~~~~~~~~a 375 (423)
T 1htt_A 309 ERLVLLVQAV-----NP-EFKADPVVDIYLVASGA------DTQSAAMALAERLRDELPGVKLMTNHGG-GNFKKQFARA 375 (423)
T ss_dssp HHHHHHHHHH-----ST-TCCCCCSCSEEEEECST------THHHHHHHHHHHHHHHSTTCCEEECCSC-CCHHHHHHHH
T ss_pred HHHHHHHHhc-----Cc-CCCCCCCCcEEEEEcCH------HHHHHHHHHHHHHHcCCCCcEEEEeCCC-CCHHHHHHHH
Confidence 9999998774 33 46667999999999973 4678999999999999 9999999988 5999999999
Q ss_pred cccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHH
Q 010430 367 EMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELL 413 (511)
Q Consensus 367 e~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l 413 (511)
++.|+|++|+||++|+++|+|+||+|+++++..|+++++++.++++|
T Consensus 376 ~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 376 DKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp HHHTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred HHcCCCEEEEECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998887654
No 28
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=1.8e-49 Score=426.51 Aligned_cols=285 Identities=15% Similarity=0.165 Sum_probs=260.3
Q ss_pred CCccccccceeecceecccCC-hhhhHHHhhhccceeeeee-----eceeEEeccchHHHHHHHHHHHHHHHHhcceeee
Q 010430 17 GKKKEVKKETGLGLSYKKDEN-FGEWYSEVVVNGEMIEYYD-----ISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNC 90 (511)
Q Consensus 17 ~~~~~~~~~r~~g~~~~~~~~-~~~~~~~~~~~a~~~d~~~-----~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev 90 (511)
||+++...+|.+|.+....+. .++| +|.++.+++| .. ++|+++|+|.|++++++|++++++.+.+.||++|
T Consensus 221 g~e~~n~~~~~~g~~~~~~~~~~dH~--~lg~~l~l~d-~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev 297 (536)
T 3err_A 221 GGEEANREIKRVGGPPEFSFPPLDHV--ALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPM 297 (536)
T ss_dssp SSGGGCEEEEEESCCCCCSSCCCCHH--HHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCeEEEEeCCCCCCCCCCCCHH--HHHHHcCCcc-cccccCCCCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 488888999999987433333 3455 6678888988 53 6899999999999999999999999999999999
Q ss_pred eeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeee-
Q 010430 91 YFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEF- 169 (511)
Q Consensus 91 ~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~- 169 (511)
.||.|.+.++|. .+||++.|.++||++++ ++++|+||+|++++.+|++++.||++||+|++++++|||+|.
T Consensus 298 ~~P~lv~~~l~~-~sG~~~~f~e~mf~~~~-------~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~g 369 (536)
T 3err_A 298 TLPSYAREKAFL-GTGHFPAYRDQVWAIAE-------TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAG 369 (536)
T ss_dssp ECCSEEEHHHHH-HHTCTTTTGGGCCEETT-------TTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTT
T ss_pred eccccccHHHHH-hcCCcccChhhceEecC-------CCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCcc
Confidence 999999999995 79999999999999874 579999999999999999999999999999999999999998
Q ss_pred ---cCCCCcccchhhhcccCcccccChh--hhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeec
Q 010430 170 ---SNPTPFIRSREFLWQEGHTAFATKS--EADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIP 244 (511)
Q Consensus 170 ---~~~~Gl~R~REF~q~e~~~~~~~~e--~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p 244 (511)
++++||+|+|||+|.|+|+ ||+++ ++++++..+++++.+||+.|| +||++...+..+.+.++.++++||+|+|
T Consensus 370 s~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~~~i~~~Lg-Lpyrvv~~~tgdlg~~a~~~yDiE~w~p 447 (536)
T 3err_A 370 SFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENAEEILRLLE-LPYRLVEVATGDMGPGKWRQVDIEVYLP 447 (536)
T ss_dssp CTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCTTTSCTTCSEEEEEEEEEG
T ss_pred ccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHHHHHHHHcC-CcEEEEEcCCcccCCChhheeeeeEecC
Confidence 3578999999999999998 88887 999999999999999999998 8999988888899999999999999999
Q ss_pred CCCcccccccccccccccccceeeEEeCCCCceeeeeee-cccc-ccceeeEEEEEeeCCCC-cccCCcccce
Q 010430 245 NTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQN-SWAY-TTRTIGVMVMVHGDDKG-LVLPPRVASV 314 (511)
Q Consensus 245 ~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~-~~Gi-~eRli~~Lie~~~d~~G-~~lP~~laP~ 314 (511)
+.++..++++++++|++++++++++|.+.+|+.+++|+. ++|+ ++|+|++|+|+|++++| +++|+.|+|+
T Consensus 448 ~~~~~~Ei~s~sn~~dyqarr~~iry~~~~~k~~~vhtlngs~~a~~R~l~ailen~q~~dg~i~iP~~L~py 520 (536)
T 3err_A 448 SEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPY 520 (536)
T ss_dssp GGTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHH
T ss_pred CCCCeEEEEEecCccChhhcccCeEEECCCCCeEeeeEEeccchhHHHHHHHHHHhcCCCCCcEeCChhhCCc
Confidence 888889999999999999999999999999998999984 5666 89999999999999999 9999999997
No 29
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=6e-49 Score=417.14 Aligned_cols=331 Identities=16% Similarity=0.152 Sum_probs=263.9
Q ss_pred eeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceee
Q 010430 53 EYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 132 (511)
Q Consensus 53 d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~L 132 (511)
.+..++|+++|+|.++++|++|++.++++++++||++|.||+|++.++|.+++|| .+.++||.|+|.+ ++.++|
T Consensus 5 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~----g~~l~L 78 (434)
T 1wu7_A 5 QIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKG----GREVTL 78 (434)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTT----SCEEEE
T ss_pred ccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCC----CCEEEe
Confidence 3457899999999999999999999999999999999999999999999877888 6889999999987 599999
Q ss_pred cCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHh
Q 010430 133 RPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 212 (511)
Q Consensus 133 RPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~ 212 (511)
|||.|++++++++.+ +++ ++|+|+||+|+|||+| +|+.| |+|||+|.|+|+|+.+.+.+++|++ .++.++|+
T Consensus 79 rPd~t~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~e-rp~~g--R~REF~Q~d~ei~g~~~~~ad~E~i---~~~~~~l~ 150 (434)
T 1wu7_A 79 IPEATPSTVRMVTSR-KDL-QRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPEADAEVI---ALASSILD 150 (434)
T ss_dssp CSCSHHHHHHHHTTC-TTC-CSSEEEEECCEEECCC-CSCSS--CCSEEEEEEEEEESCCSHHHHHHHH---HHHHHHHH
T ss_pred CCCChHHHHHHHHhc-CCC-CCCeEEEEEcCeecCC-CCCCC--CccceEEeeEEEEcCCChHhhHHHH---HHHHHHHH
Confidence 999999999999988 777 8999999999999999 78889 9999999999999888888888864 55689999
Q ss_pred hhhccc--ccc--cc------------cccc-------ccc--------------cC----------ccc--eeeE----
Q 010430 213 EFLAVP--VIK--GK------------KSEL-------EKF--------------AG----------GLY--TTTV---- 239 (511)
Q Consensus 213 ~lg~ip--~~~--g~------------~~~~-------ek~--------------~g----------a~y--~~~i---- 239 (511)
.+| ++ +.+ +. ...+ ++. .+ +++ .+++
T Consensus 151 ~lg-l~~~~~i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (434)
T 1wu7_A 151 RLG-LQDIYEIRINSRKIMEEIIGGMTSSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMA 229 (434)
T ss_dssp HTT-TTTSEEEEEEEHHHHHHHHHTTCSSCHHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHH
T ss_pred HcC-CCCceEEEECChhhHHHHHHHhCcHhHHHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 998 45 432 11 1110 000 00 011 1221
Q ss_pred -------------------------E-Eee-cCCCcccc--ccccccc----ccccccceeeEEeCCC----Cceeeeee
Q 010430 240 -------------------------E-AFI-PNTGRGIQ--GATSHCL----GQNFSKMFEIIFENEK----GEKAMAWQ 282 (511)
Q Consensus 240 -------------------------e-~~~-p~~gr~lq--~gt~~~l----g~~~s~~f~i~y~~~~----g~~~~v~~ 282 (511)
. ..+ +++.|+++ +|++|+. |...+..-+.+|++.- |+..++.
T Consensus 230 ~~~~~~~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~- 308 (434)
T 1wu7_A 230 RITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAV- 308 (434)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEE-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeE-
Confidence 1 111 34455555 4555542 2233445667775431 3444544
Q ss_pred ecccc-ccceeeEEEEEeeCCCCccc-CCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCC
Q 010430 283 NSWAY-TTRTIGVMVMVHGDDKGLVL-PPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPG 360 (511)
Q Consensus 283 ~~~Gi-~eRli~~Lie~~~d~~G~~l-P~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg 360 (511)
+||+ ++|++++|.++ | .| |+ +|.||+|+|++. +..++|.++++.||++|++|++|+++ .++|
T Consensus 309 -Gf~igveRl~~~l~e~-----~-~~~p~--~p~~v~v~~~~~------~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~ 372 (434)
T 1wu7_A 309 -GFGMGDAVISLLLKRE-----N-VQIPR--EKKSVYICRVGK------INSSIMNEYSRKLRERGMNVTVEIME-RGLS 372 (434)
T ss_dssp -EEEEEHHHHHHHHHHT-----T-CCCCC--SSCEEEEEEESS------CCHHHHHHHHHHHHTTTCEEEECCSC-CCHH
T ss_pred -EEEEcHHHHHHHHHhc-----C-CccCC--CCCcEEEEEcCh------HHHHHHHHHHHHHHHCCCeEEEecCC-CCHH
Confidence 4665 79999998774 2 56 76 899999999973 35688999999999999999999987 5999
Q ss_pred CCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHH
Q 010430 361 WKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 361 ~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~ 415 (511)
+||++|++.|+|++|+||++|+++|+|+||+|.++++..|+++++++.++++|.-
T Consensus 373 ~~~~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~~ 427 (434)
T 1wu7_A 373 AQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQATL 427 (434)
T ss_dssp HHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC-
T ss_pred HHHHHHHHCCCCEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999988777653
No 30
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=9.5e-46 Score=395.30 Aligned_cols=340 Identities=18% Similarity=0.154 Sum_probs=260.3
Q ss_pred hhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcc-eeeEecc---
Q 010430 46 VVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE-VAWVTKS--- 121 (511)
Q Consensus 46 ~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~e-my~~~~~--- 121 (511)
+.+-+.+++.+++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.+. | +. .++ ||.|.|.
T Consensus 4 ~~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G--~~-~ke~m~~~~d~~~~ 79 (465)
T 3net_A 4 MAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G--NQ-GDNIIYGLEPILPP 79 (465)
T ss_dssp -----CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G--CC---CBEEEEEEEC--
T ss_pred ccCCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C--CC-CccceEEEeccccc
Confidence 55677888889999999999999999999999999999999999999999999999765 6 33 367 9999997
Q ss_pred CCC--------CCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccCh
Q 010430 122 GES--------DLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 193 (511)
Q Consensus 122 g~~--------~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~ 193 (511)
|+. ..++.++|||+.|++++++++.+.. +.++|+|+||+|+|||+| +|++| |+|||+|+++|+++...
T Consensus 80 g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~-~~~~p~r~~y~g~vfR~e-~~~~g--r~Ref~Q~g~ei~G~~~ 155 (465)
T 3net_A 80 NRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLN-DLTFPFARYQMDVVFRGE-RAKDG--RFRQFRQCDIDVVGREK 155 (465)
T ss_dssp --------------CCEEECSCSHHHHHHHHHHHGG-GSCSSEEEEECCEEECBC---------CCEEEEEEEEEECSSC
T ss_pred ccccccccccCCCCCEEEeCCCChHHHHHHHHhccc-ccCCCeEEEEeccEEecC-CCCCC--CcceeEEeeEEEECCCC
Confidence 300 0148999999999999999998764 568999999999999999 67899 99999999999999888
Q ss_pred hhh--HHHHHHHHHHHHHHHhhhhccccc--cc-------------ccc-----------ccc-----------------
Q 010430 194 SEA--DDEVLQILELYRRIYEEFLAVPVI--KG-------------KKS-----------ELE----------------- 228 (511)
Q Consensus 194 e~a--~~e~~~~l~~~~~i~~~lg~ip~~--~g-------------~~~-----------~~e----------------- 228 (511)
..+ |+|++.++ .++|+.+|.-.+. ++ ... ..+
T Consensus 156 ~~a~~DaEvi~l~---~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~ 232 (465)
T 3net_A 156 LSLLYDAQMPAII---TEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGIN 232 (465)
T ss_dssp CCHHHHHHHHHHH---HHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCC
T ss_pred ccchhhHHHHHHH---HHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCC
Confidence 888 88887665 7888888731121 11 000 000
Q ss_pred -----------cccCc---------------c---------------c--eeeE--E----Eee-cCCCcccc--ccccc
Q 010430 229 -----------KFAGG---------------L---------------Y--TTTV--E----AFI-PNTGRGIQ--GATSH 256 (511)
Q Consensus 229 -----------k~~ga---------------~---------------y--~~~i--e----~~~-p~~gr~lq--~gt~~ 256 (511)
.+.|. . + .. + . ..+ |++.|+++ +|++|
T Consensus 233 ~~~~~~l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~-~~~~~~~~~~~D~~lvrgldYYtG~vF 311 (465)
T 3net_A 233 PEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVR-NLGVPDKRFCIDLAIARGLNYYTGTVY 311 (465)
T ss_dssp HHHHHHHHHHHTCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HTTCCGGGEEECTTCCCCSSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHh-cccccCceEEEccCccCCCcccCceEE
Confidence 00010 0 0 00 1 1 223 67889998 68888
Q ss_pred cc-----ccccccceeeEEeCCC----Cceeeeeeecccc-ccceeeEEEEEeeCCCCcccCC-cccceeEEEEeeccCc
Q 010430 257 CL-----GQNFSKMFEIIFENEK----GEKAMAWQNSWAY-TTRTIGVMVMVHGDDKGLVLPP-RVASVQVIVVPVPYKD 325 (511)
Q Consensus 257 ~l-----g~~~s~~f~i~y~~~~----g~~~~v~~~~~Gi-~eRli~~Lie~~~d~~G~~lP~-~laP~qV~Iipi~~~~ 325 (511)
+. +..-+..-|.||++-- |.. ++.++||+ ++|++++|.++ | .||. |.+|.||+|+|++
T Consensus 312 e~~~~~~~~~~~i~~GGRYD~L~~~f~g~~--~pavGfaiGieRli~~L~e~-----g-~~p~~~~~p~~V~Vi~~~--- 380 (465)
T 3net_A 312 ETTLIGHEALGSICSGGRYEELVGTFIGEK--MPGVGISIGLTRLISRLLKA-----G-ILNTLPPTPAQVVVVNMQ--- 380 (465)
T ss_dssp EEEETTCGGGCCSSEEEEESSSSGGGTCSC--CCEEEEEEEHHHHHHHHHHT-----T-SSCCCCSCSCCEEECCSC---
T ss_pred EEEECCCCccceecccccHHHHhhhhcCCC--CceeeeeccHHHHHHHHHHc-----C-CCCCcCCCCCeEEEEEcC---
Confidence 63 2223678889997532 443 44555555 79999998874 3 3887 8999999999987
Q ss_pred cchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCC-cEEEEEccCCCccccccch
Q 010430 326 ADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKN-QVRAVRRDNGAKVDLPRSS 404 (511)
Q Consensus 326 ~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~-~Vtvr~r~~~ek~~v~~~e 404 (511)
++..++|.+|++.||++|++|++|+++ .++|+||++|++.|+|++|+||++ +++| +|+||+|++++|..|++++
T Consensus 381 ---~~~~~~A~~la~~LR~~Gi~ve~d~~~-~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~e 455 (465)
T 3net_A 381 ---DELMPTYLKVSQQLRQAGLNVITNFEK-RQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALAD 455 (465)
T ss_dssp ---GGGHHHHHHHHHHHHHTTCCEEECCSC-CCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CC
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHH
Confidence 356789999999999999999999997 699999999999999999999999 9999 9999999999999999999
Q ss_pred HHHHHHHHH
Q 010430 405 LVERIKELL 413 (511)
Q Consensus 405 l~~~i~~~l 413 (511)
+++.|++.|
T Consensus 456 l~~~l~~~l 464 (465)
T 3net_A 456 LAEEIKRRL 464 (465)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 998886643
No 31
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.3e-45 Score=397.75 Aligned_cols=332 Identities=19% Similarity=0.168 Sum_probs=250.2
Q ss_pred eeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecC
Q 010430 55 YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 134 (511)
Q Consensus 55 ~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRP 134 (511)
..++||+||+|.++.+|+.|++.+++.++++||++|.||+|++.++|.+..|+. .++||.|+|.+ ++.++|||
T Consensus 68 ~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~---~~~my~f~D~~----g~~l~LRP 140 (517)
T 4g85_A 68 KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED---SKLIYDLKDQG----GELLSLRY 140 (517)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC---------CSCBBCCTT----SCCEEECS
T ss_pred eCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC---cceeEEEECCC----CCEEEeCC
Confidence 468999999999999999999999999999999999999999999997766643 57899999987 59999999
Q ss_pred CCccccchhhhhhhhcCCCCccccccccceEeeeecC--CCCcccchhhhcccCccccc-ChhhhHHHHHHHHHHHHHHH
Q 010430 135 TSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSN--PTPFIRSREFLWQEGHTAFA-TKSEADDEVLQILELYRRIY 211 (511)
Q Consensus 135 t~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~--~~Gl~R~REF~q~e~~~~~~-~~e~a~~e~~~~l~~~~~i~ 211 (511)
+.|++++++++. ++.+|+|+||+|+|||+| +| ++| |+|||+|+++|+|+. ++..+|+|++.++ .++|
T Consensus 141 d~T~~~aR~~~~----~~~~p~k~yyig~vfR~E-rp~~~~G--R~ReF~Q~g~ei~G~~~~~~aDaEvi~l~---~~~l 210 (517)
T 4g85_A 141 DLTVPFARYLAM----NKLTNIKRYHIAKVYRRD-NPAMTRG--RYREFYQCDFDIAGNFDPMIPDAECLKIM---CEIL 210 (517)
T ss_dssp CSHHHHHHHHHH----TTCSCEEEEEEEEEECCC-C---------CCEEEEEEEEEESCCCTTHHHHHHHHHH---HHHH
T ss_pred cCcHHHHHHHHh----CCCCCceeEEEeceEecc-CcccccC--ccceeeeeceeccCCccchHHHHHHHHHH---HHHH
Confidence 999999887764 467899999999999999 66 458 999999999999775 3456788876554 7888
Q ss_pred hhhhccccc--cc-------------c----------------ccccc------------------c------ccCc---
Q 010430 212 EEFLAVPVI--KG-------------K----------------KSELE------------------K------FAGG--- 233 (511)
Q Consensus 212 ~~lg~ip~~--~g-------------~----------------~~~~e------------------k------~~ga--- 233 (511)
+.+|.-.+. ++ . +..++ . ..|.
T Consensus 211 ~~lgl~~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~ 290 (517)
T 4g85_A 211 SSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSL 290 (517)
T ss_dssp HHHCCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHH
T ss_pred HhhcCCcccccccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchH
Confidence 888731111 00 0 00000 0 0000
Q ss_pred -------------------------------cceeeEEEee-cCCCcccc--cccccccc-----cc--------cccce
Q 010430 234 -------------------------------LYTTTVEAFI-PNTGRGIQ--GATSHCLG-----QN--------FSKMF 266 (511)
Q Consensus 234 -------------------------------~y~~~ie~~~-p~~gr~lq--~gt~~~lg-----~~--------~s~~f 266 (511)
.++......+ |+++|+++ +|++|+.- .+ -+...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~ 370 (517)
T 4g85_A 291 VEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAA 370 (517)
T ss_dssp HHHHHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEE
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecC
Confidence 0111111222 67889887 68888631 11 14556
Q ss_pred eeEEe------CCCCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHH
Q 010430 267 EIIFE------NEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVE 340 (511)
Q Consensus 267 ~i~y~------~~~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~ 340 (511)
+.+|+ +..|+..|+.+.++| ++|++.+|.++. .++.+|.+.+|.+|+|++++. +..++|.+|++
T Consensus 371 GGRYD~Lv~~f~~~G~~~pavGfa~g-ierl~~~le~~~---~~~~~~~~~~~~~V~v~~~~~------~~~~~a~~l~~ 440 (517)
T 4g85_A 371 GGRYDGLVGMFDPKGRKVPCVGLSIG-VERIFSIVEQRL---EALEEKIRTTETQVLVASAQK------KLLEERLKLVS 440 (517)
T ss_dssp EEECHHHHHTTSSSCCCCCEEEEEEC-HHHHHHHHHHHH---HHTTCCCCSCCCCEEEEESSS------SCHHHHHHHHH
T ss_pred CCchhHHHHHhccCCCCCCcccccch-HHHHHHHHHHhc---cccCccccCCCCEEEEEeCCH------HHHHHHHHHHH
Confidence 77886 335676777777777 599998764432 123455566788999999873 46789999999
Q ss_pred HHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHH
Q 010430 341 TLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELL 413 (511)
Q Consensus 341 ~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l 413 (511)
.||++||+|++|+....+++++|++|++.|+||+||||++|+++|+|+||++.+|+|.+|++++|++.|++.+
T Consensus 441 ~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l 513 (517)
T 4g85_A 441 ELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRT 513 (517)
T ss_dssp HHHHTTCCEEECSSSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHC
T ss_pred HHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHh
Confidence 9999999999986443589999999999999999999999999999999999999999999999999987765
No 32
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.2e-45 Score=389.91 Aligned_cols=334 Identities=19% Similarity=0.159 Sum_probs=250.7
Q ss_pred eeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeec
Q 010430 54 YYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 133 (511)
Q Consensus 54 ~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LR 133 (511)
+..++||+||+|.++.+|+.|++.+++.++++||++|.||+|++.++|.+.+|+. .++||.|+|++ ++.++||
T Consensus 14 ~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~---~~~~y~f~D~~----g~~l~LR 86 (464)
T 4g84_A 14 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED---SKLIYDLKDQG----GELLSLR 86 (464)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-------CCCBBCCCS----SCCEEEC
T ss_pred eeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcC---cceeEEEECCC----CCEEEeC
Confidence 3579999999999999999999999999999999999999999999997666643 57899999987 5999999
Q ss_pred CCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCccccc-ChhhhHHHHHHHHHHHHHHHh
Q 010430 134 PTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQILELYRRIYE 212 (511)
Q Consensus 134 Pt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~-~~e~a~~e~~~~l~~~~~i~~ 212 (511)
|+.|++++++++. ++.+|+|+||+|+|||+| +|+.|..|+|||+|.++|+++. ++..+|+|++.++ .++|+
T Consensus 87 Pd~T~~~aR~~~~----~~~~p~k~~y~g~vfR~e-rp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~---~~~l~ 158 (464)
T 4g84_A 87 YDLTVPFARYLAM----NKLTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIM---CEILS 158 (464)
T ss_dssp SCSHHHHHHHHHH----TTCSCEEEEEEEEEECCC-C------CCSEEEEEEEEEESCCSTTHHHHHHHHHH---HHHHH
T ss_pred CcCcHHHHHHHHh----cCCCCceeEEEecceecc-CCccccCccceeeecceeccCCccchhhHHHHHHHH---HHHHH
Confidence 9999999887664 467899999999999999 7754444999999999999875 4456788876554 78888
Q ss_pred hhhccccc--ccc-----------------------------ccccc------------------c------ccCc----
Q 010430 213 EFLAVPVI--KGK-----------------------------KSELE------------------K------FAGG---- 233 (511)
Q Consensus 213 ~lg~ip~~--~g~-----------------------------~~~~e------------------k------~~ga---- 233 (511)
.+|.-.+. ++. +...+ . ..|.
T Consensus 159 ~lgl~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~ 238 (464)
T 4g84_A 159 SLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLV 238 (464)
T ss_dssp HHTCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHH
T ss_pred HhCCCCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHH
Confidence 88731111 000 00000 0 0000
Q ss_pred ------------------------------cceeeEEEee-cCCCcccc--cccccccc-----cc--------ccccee
Q 010430 234 ------------------------------LYTTTVEAFI-PNTGRGIQ--GATSHCLG-----QN--------FSKMFE 267 (511)
Q Consensus 234 ------------------------------~y~~~ie~~~-p~~gr~lq--~gt~~~lg-----~~--------~s~~f~ 267 (511)
.++......+ |++.|+++ +|++|+.- .+ .+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~G 318 (464)
T 4g84_A 239 EQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAG 318 (464)
T ss_dssp HHHTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEE
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCcccceeccC
Confidence 0011111112 67788887 68888631 11 144567
Q ss_pred eEEeCC------CCceeeeeeeccccccceeeEEEEEeeCCCCcccCC--cccceeEEEEeeccCccchhHHHHHHHHHH
Q 010430 268 IIFENE------KGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPP--RVASVQVIVVPVPYKDADTQGIFDACTATV 339 (511)
Q Consensus 268 i~y~~~------~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~--~laP~qV~Iipi~~~~~~~~~~~~~a~~i~ 339 (511)
.+|++. .|+..|+.+.++| ++|++.+|.++ +..+|+ +..|.+|+|++++. +..++|.+|+
T Consensus 319 GRYD~L~~~~~~~g~~~pavGfaig-ieRl~~~l~~~-----~~~~~~~~~~~~~~v~v~~~~~------~~~~~a~~l~ 386 (464)
T 4g84_A 319 GRYDGLVGMFDPKGRKVPCVGLSIG-VERIFSIVEQR-----LEALEEKIRTTETQVLVASAQK------KLLEERLKLV 386 (464)
T ss_dssp EECCSTGGGTSTTCCCCCEEEEEEC-HHHHHHHHHHH-----HHTTTCCCCSCCCCEEEECSSS------SCHHHHHHHH
T ss_pred CchhHHHHHhccCCCCCCCcccccc-HHHHHHHHHHh-----ccccCcccccccceEEEEeCCH------HHHHHHHHHH
Confidence 788743 3565666666666 69999887553 234443 34567888888873 4678999999
Q ss_pred HHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHH
Q 010430 340 ETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLD 414 (511)
Q Consensus 340 ~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~ 414 (511)
+.||++||+|++|+....+++++|++|++.|+||+||||++|+++|+|+||++.+|+|.+|++++|++.|++.+.
T Consensus 387 ~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 461 (464)
T 4g84_A 387 SELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 461 (464)
T ss_dssp HHHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHT
T ss_pred HHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 999999999999865435899999999999999999999999999999999999999999999999999887653
No 33
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=1e-44 Score=387.26 Aligned_cols=273 Identities=18% Similarity=0.209 Sum_probs=234.8
Q ss_pred eecccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHH-HHhcceeeeeeecccChhhhhhhhhccc
Q 010430 31 SYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAE-IKKMKIQNCYFPLFVSPTVLQKEKDHIE 109 (511)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~-~~~~G~~ev~tP~l~~~~l~~~~sg~~~ 109 (511)
+.+++.+|++|+.+++.+++++....++|+++|+|.|+++|++|++++++. +.++||++|.||+|++.++|. .|||++
T Consensus 194 ~t~re~~f~~~~~~ll~raG~i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~-~SGh~~ 272 (522)
T 2cja_A 194 REPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWM-KSGHAK 272 (522)
T ss_dssp CCCCCCCCCSCHHHHHHHTTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHH-HHTGGG
T ss_pred hcccCCCcchHHHHHHHHCCCeeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHh-hcCCcC
Confidence 336788899999999999999998899999999999999999999999975 899999999999999999996 599999
Q ss_pred CCCcceeeEeccC--C-----------------------C-CCCCceeecCCCccccchhhhhhhhcCCCCcccccc-cc
Q 010430 110 GFAPEVAWVTKSG--E-----------------------S-DLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQ-WC 162 (511)
Q Consensus 110 ~f~~emy~~~~~g--~-----------------------~-~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q-~g 162 (511)
.|.++||+++..+ + + ..+++++||||+|++++.+|++++.||++||++++| +|
T Consensus 273 ~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig 352 (522)
T 2cja_A 273 GVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSG 352 (522)
T ss_dssp TCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSS
T ss_pred ccccceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcC
Confidence 9999999996321 0 0 014789999999999999999999999999999999 99
Q ss_pred ceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH-HHHHHHHhhhhcccccccccccccccc-------C--
Q 010430 163 NVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL-ELYRRIYEEFLAVPVIKGKKSELEKFA-------G-- 232 (511)
Q Consensus 163 ~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l-~~~~~i~~~lg~ip~~~g~~~~~ek~~-------g-- 232 (511)
+|||+|.++++||+|+|||+|.|+|+ |++++++++++..++ .....+++.|| +| .+. ...+.|. |
T Consensus 353 ~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~s~ee~ee~i~~~~~~~l~~LG-Lp-~v~--~~~D~f~~a~~G~~G~~ 427 (522)
T 2cja_A 353 TSHRYESGGIHGIERVDEFHRIEIVW-IGTKEEVLKCAEELHDRYMHIFNDILD-IE-WRK--ARVTPWFMAQEGLLGLA 427 (522)
T ss_dssp EEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHHHHHHHHHHHHHHHHHHHHTSC-CC-EEE--EEC--------------
T ss_pred ceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHHHHHHHHHHHHHHHHHHHHHcC-CC-EEe--eccCCccccccccccch
Confidence 99999943348999999999999999 789999999999999 67777789888 88 432 2334443 1
Q ss_pred ---ccceeeEEEeec---CCCcccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEEeeCCCCc
Q 010430 233 ---GLYTTTVEAFIP---NTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMVHGDDKGL 305 (511)
Q Consensus 233 ---a~y~~~ie~~~p---~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~~~d~~G~ 305 (511)
+..++++|+|+| +.++.++++++++++++|+++|+++|. +| .++|++++|+ ++|+++||+|+|+++.+
T Consensus 428 q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~qarr~~Ir~~--~~--~~vht~~~Glgv~Rli~AlLE~~~~~~~- 502 (522)
T 2cja_A 428 EENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQ--SG--DELWSGCSGVGLERWAAVFLAQKGLDPA- 502 (522)
T ss_dssp --CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEET--TC--CCEEEEEEEEEHHHHHHHHHHHHCSCGG-
T ss_pred hccccceEEEEEecccccCCCcEEEEeeechhhhhcccccceEcC--CC--CEEEEeccCcHHHHHHHHHHHHcCCCCC-
Confidence 457789999999 478899999999999999999999986 34 3899999988 89999999999998766
Q ss_pred ccCCcccce
Q 010430 306 VLPPRVASV 314 (511)
Q Consensus 306 ~lP~~laP~ 314 (511)
.||..|.|+
T Consensus 503 ~wP~~lr~y 511 (522)
T 2cja_A 503 NWPEEFRNR 511 (522)
T ss_dssp GSCHHHHHH
T ss_pred cCchHHHHh
Confidence 899888876
No 34
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=5.7e-44 Score=379.75 Aligned_cols=329 Identities=16% Similarity=0.134 Sum_probs=245.4
Q ss_pred ceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCc
Q 010430 50 EMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 129 (511)
Q Consensus 50 ~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~ 129 (511)
.|+.+..++|++||+|.++.+|+.|++.+++.++++||++|.||+|++.++|.+.+||. +.++||.|.|.+ ++.
T Consensus 25 ~m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~----g~~ 98 (456)
T 3lc0_A 25 NMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKG----GHR 98 (456)
T ss_dssp CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSS----SCE
T ss_pred ccccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCC----CCE
Confidence 36677889999999999999999999999999999999999999999999997767873 678999999987 589
Q ss_pred eeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHH
Q 010430 130 IAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 209 (511)
Q Consensus 130 l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~ 209 (511)
++|||+.|+++++++..+.. ++++|+|+||+|+|||+| +|+.| |+|||+|+|+|+|+.....+|+|++.++ .+
T Consensus 99 l~LRpd~T~~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e-~~~~g--R~ReF~Q~g~ei~G~~~~~~DaEvi~l~---~~ 171 (456)
T 3lc0_A 99 VALRPEMTPSLARLLLGKGR-SLLLPAKWYSIPQCWRYE-AITRG--RRREHYQWNMDIVGVKSVSAEVELVCAA---CW 171 (456)
T ss_dssp EEECSCSHHHHHHHHHHSCT-TCCSSEEEEECCEEECCC-C-------CCEEEEEEEEEESCCSTHHHHHHHHHH---HH
T ss_pred EecCCcCHHHHHHHHHhcCc-ccCCCEEEEEeccEEecC-CCCCC--CccceEEEEEEEEcCCChHhhHHHHHHH---HH
Confidence 99999999999999988754 568999999999999999 67889 9999999999999988888888876555 88
Q ss_pred HHhhhhc--cccc--c-------------cccc-----------ccccc----------------------------c--
Q 010430 210 IYEEFLA--VPVI--K-------------GKKS-----------ELEKF----------------------------A-- 231 (511)
Q Consensus 210 i~~~lg~--ip~~--~-------------g~~~-----------~~ek~----------------------------~-- 231 (511)
+|+.+|. -.+. + |... ..++. .
T Consensus 172 ~l~~lgl~~~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~ 251 (456)
T 3lc0_A 172 AMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSI 251 (456)
T ss_dssp HHHHTTCCTTTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSH
T ss_pred HHHHcCCCCCceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCH
Confidence 8888873 1221 1 1100 00000 0
Q ss_pred -------C-c---c------c----eeeEE--Eee-cCCCcccc--ccccccc----ccccccceeeEEeCC----CCc-
Q 010430 232 -------G-G---L------Y----TTTVE--AFI-PNTGRGIQ--GATSHCL----GQNFSKMFEIIFENE----KGE- 276 (511)
Q Consensus 232 -------g-a---~------y----~~~ie--~~~-p~~gr~lq--~gt~~~l----g~~~s~~f~i~y~~~----~g~- 276 (511)
+ + + + ...+. ..+ |++.|+++ +|++|+. |...+..-|.||++. .|.
T Consensus 252 ~~l~~~l~~~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~ 331 (456)
T 3lc0_A 252 DEIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPT 331 (456)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCC
Confidence 0 0 0 0 01111 223 78899998 6999873 344567888999753 233
Q ss_pred eeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCC
Q 010430 277 KAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDN 356 (511)
Q Consensus 277 ~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~ 356 (511)
..|+.+.++| ++|++.+|.+. + ..|+.-.+.+|+|++.+. +...+|.++++.||++|++|++|..+
T Consensus 332 ~~PavGFaig-~eRl~~~l~~~-----~-~~~~~~~~~~v~v~~~~~------~~~~~a~~la~~LR~~Gi~ve~~~~~- 397 (456)
T 3lc0_A 332 PIPCAGFGFG-DCVIVELLQEK-----R-LLPDIPHVVDDVVIPFDE------SMRPHALAVLRRLRDAGRSADIILDK- 397 (456)
T ss_dssp CCCEEEEEEE-SSHHHHHHHHT-----T-CCCCCCCCEEEEEEESSG------GGHHHHHHHHHHHHHTTCCEEECCSC-
T ss_pred CCCEEEEEeE-HHHHHHHHHhc-----C-CCCccCCCCcEEEEEcCH------HHHHHHHHHHHHHHHCCCeEEEecCC-
Confidence 3466666666 69999877431 2 233323356789999873 45688999999999999999999987
Q ss_pred CCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchH
Q 010430 357 YSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSL 405 (511)
Q Consensus 357 ~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el 405 (511)
.++++++++|++.|+|++|+||++|+++|+|+||++.+++|..+++++.
T Consensus 398 ~slkkq~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 398 KKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp CCHHHHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC------------
T ss_pred CCHHHHHHHHHHcCCCEEEEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 5999999999999999999999999999999999999999999888764
No 35
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=100.00 E-value=3.8e-37 Score=309.59 Aligned_cols=247 Identities=16% Similarity=0.157 Sum_probs=213.7
Q ss_pred eeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCC-------
Q 010430 52 IEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGES------- 124 (511)
Q Consensus 52 ~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~------- 124 (511)
++...++|++.+.+.+.+|++.|++++++ ..+.||++|.||.|.+.++|+ .|||++.|.++||.+..-.+.
T Consensus 48 ~~~~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e-~SGhl~~F~e~mf~v~~~~~d~~e~~~l 125 (346)
T 3mf2_A 48 FHSMGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLE-KSGYLKSFPNLLGCVCGLHGTEREINAA 125 (346)
T ss_dssp EEEEEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHH-HTTHHHHCGGGCEEEEEECSCHHHHHHH
T ss_pred hcccCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHH-hcCCcccChhhcceeecccccchhhhhh
Confidence 34556899999999999999999999999 999999999999999999995 699999999999987531100
Q ss_pred ------------C-CCCceeecCCCccccchhhhhh-hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccc
Q 010430 125 ------------D-LEVPIAIRPTSETVMYPYYSKW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 190 (511)
Q Consensus 125 ------------~-l~~~l~LRPt~e~~~~~~~~~~-~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~ 190 (511)
. .+.+++|+||+|++++.+|++. +.+ +.|+|+..+|+|||+|.+ .||+|+|||+|.|+|+ +
T Consensus 126 l~~~~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~EaS--~GL~RvhqF~kvE~v~-~ 200 (346)
T 3mf2_A 126 VSRFDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREPS--KHLDRLQSFRMREYVC-I 200 (346)
T ss_dssp HHHHHTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCCC--SSTTSCSEEEEEEEEE-E
T ss_pred hhhhccccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcCC--CCCeeeeeeEEEEEEE-E
Confidence 0 1257999999999999999975 655 459999999999999974 6999999999999998 8
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccC------------ccceeeEEEeecCCCccccccccccc
Q 010430 191 ATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAG------------GLYTTTVEAFIPNTGRGIQGATSHCL 258 (511)
Q Consensus 191 ~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~g------------a~y~~~ie~~~p~~gr~lq~gt~~~l 258 (511)
|+++++.+|+..+++...++|+.|| +||++... .|.|.+ +..++++|+|+|+.+++.+++++.|+
T Consensus 201 ~tpEqs~~e~e~l~~~ae~il~~Lg-Lpyrv~~~--~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~ 277 (346)
T 3mf2_A 201 GTPDDVSDFRERWMVRAQAIARDLG-LTFRVDYA--SDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYH 277 (346)
T ss_dssp ESHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEC--CCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEEC
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEc--cCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecc
Confidence 9999999999999999999999998 89887654 344444 24689999999999999999999999
Q ss_pred ccccccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEEeeCCCCcccCCcccc
Q 010430 259 GQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMVHGDDKGLVLPPRVAS 313 (511)
Q Consensus 259 g~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP 313 (511)
++.|+++++|+|.+ | .++|+.|.|+ ++|++.+|+|+||+|. ..||..+.+
T Consensus 278 ~dfqarR~~Ir~~~--~--~~vHT~~sglav~R~l~AiLen~G~d~-~~wP~~lr~ 328 (346)
T 3mf2_A 278 REHFGTTWGIQDAN--G--EPAHTGCVAFGMDRLAVAMFHTHGTDL-SAWPAKVRD 328 (346)
T ss_dssp TTHHHHHHTCBCTT--S--SBCEEEEEEEEHHHHHHHHHHHHCSCG-GGSCHHHHH
T ss_pred cchhhhhhcceeCC--C--CeEEEcccchHHHHHHHHHHHHcCCCc-cccCHHHHH
Confidence 99999999999963 3 4899988888 8999999999999874 578876554
No 36
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.97 E-value=2e-31 Score=278.87 Aligned_cols=294 Identities=11% Similarity=-0.043 Sum_probs=211.4
Q ss_pred eeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeec
Q 010430 54 YYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 133 (511)
Q Consensus 54 ~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LR 133 (511)
+..++|++||+|.++.+|+.|++.+++.++++||++|.||+|++.++|.+ +| +.+.++||.|.|.+ ++.++||
T Consensus 10 ~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~-~g--~~~~~~my~f~D~~----g~~l~LR 82 (400)
T 3od1_A 10 FEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGV-VS--AILDQQLFKLLDQQ----GNTLVLR 82 (400)
T ss_dssp TCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHH-HS--SSCGGGSCEEECTT----SCEEEEC
T ss_pred ccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cC--CccccceEEEECCC----CCEEEEC
Confidence 45799999999999999999999999999999999999999999999965 44 56789999999987 5899999
Q ss_pred CCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhh
Q 010430 134 PTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 213 (511)
Q Consensus 134 Pt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~ 213 (511)
|+.|+++++++++... ++++|+|+||+|+|||+| +|+.| |+|||+|.++|+|+.+...+|+|++.++ .++|+.
T Consensus 83 pd~T~~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e-~~~~g--R~Ref~Q~g~ei~G~~~~~aDaEvi~l~---~~~l~~ 155 (400)
T 3od1_A 83 PDMTAPIARLVASSLK-DRAYPLRLAYQSNVYRAQ-QNEGG--KPAEFEQLGVELIGDGTASADGEVIALM---IAALKR 155 (400)
T ss_dssp SCSHHHHHHHHHHHCS-SSCSCEEEEEEEEEECCC-C---C--CCSEEEEEEEEEESCCSHHHHHHHHHHH---HHHHHH
T ss_pred CCCHHHHHHHHHhhcc-cCCCCeEEEEEcCEEeCC-CCCCC--CCCccEEeEEEEECCCChHhHHHHHHHH---HHHHHH
Confidence 9999999999987643 578999999999999999 67889 9999999999999988888888876555 888888
Q ss_pred hhccccc--ccc-------------cc-----------cc-----c-----------------cc---cCc---------
Q 010430 214 FLAVPVI--KGK-------------KS-----------EL-----E-----------------KF---AGG--------- 233 (511)
Q Consensus 214 lg~ip~~--~g~-------------~~-----------~~-----e-----------------k~---~ga--------- 233 (511)
+|.-++. ++. .. +. + .. .|.
T Consensus 156 lgl~~~~i~l~~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~ 235 (400)
T 3od1_A 156 AGLSEFKVAIGHVGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARG 235 (400)
T ss_dssp TTCCSEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHT
T ss_pred CCCCceEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHh
Confidence 8731221 110 00 00 0 00 000
Q ss_pred ----------------------cceeeEEEee-cCCCcccc--ccccccc---ccccccceeeEEeCC---CCceeeeee
Q 010430 234 ----------------------LYTTTVEAFI-PNTGRGIQ--GATSHCL---GQNFSKMFEIIFENE---KGEKAMAWQ 282 (511)
Q Consensus 234 ----------------------~y~~~ie~~~-p~~gr~lq--~gt~~~l---g~~~s~~f~i~y~~~---~g~~~~v~~ 282 (511)
.++..-...+ |++.|+++ +|++|+. +...+..-+.+|++. -|...|+.+
T Consensus 236 l~~~~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~~~pavG 315 (400)
T 3od1_A 236 LIQTEKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLGVPLCSGGRYDELLSKFHRPAQATG 315 (400)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETTCSSEEEEEEECTTHHHHTTCCCCEEE
T ss_pred hhcChhhHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEECCCCCeeecccccchhhhccCCCCCEEE
Confidence 0111100122 78899998 6899873 112356778899753 233345555
Q ss_pred eccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCC
Q 010430 283 NSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWK 362 (511)
Q Consensus 283 ~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k 362 (511)
.++| ++|++.+|.+. + ..|+ .| .|+| +.+ ++....|.++++.||++|++|+++..+. ...
T Consensus 316 faig-lerL~~~l~~~-----~-~~~~--~~-~v~v-~~~------~~~~~~a~~~a~~LR~~G~~v~~~~~~~--~~~- 375 (400)
T 3od1_A 316 FGVR-IDLLVEALNGE-----I-ISNG--HE-QTCI-LFS------NERRFEAIELARKKRANGEAVVLQDLAG--VTD- 375 (400)
T ss_dssp EEEE-HHHHHHHHCC--------------CC-CEEE-EEC------GGGHHHHHHHHHHHHTTTCCEEEEEGGG--CSC-
T ss_pred EEee-HHHHHHHHHhc-----C-CCCC--CC-eEEE-EEC------cHHHHHHHHHHHHHHHCCCEEEEEecCC--hhH-
Confidence 5555 79999877543 1 1121 12 2554 444 2346788999999999999999998652 222
Q ss_pred CCcccccCceeEeeeCcccc
Q 010430 363 YSHWEMKGVPLRIEIGPKDL 382 (511)
Q Consensus 363 ~~~ae~~giP~~iivG~~E~ 382 (511)
.++..+|+..++.+..++-
T Consensus 376 -~~~~~~~~~~~~~~~~~~~ 394 (400)
T 3od1_A 376 -VDAMSSNYQDVIYCIGTAG 394 (400)
T ss_dssp -HHHHHTTSSEEEEECSCC-
T ss_pred -HHHHHcCCCEEEEEecCCC
Confidence 2777889999999887653
No 37
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.93 E-value=7.2e-27 Score=239.94 Aligned_cols=152 Identities=13% Similarity=0.050 Sum_probs=129.3
Q ss_pred eeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhh-hhhcccCCCcceeeEeccCCCCCCCc
Q 010430 51 MIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK-EKDHIEGFAPEVAWVTKSGESDLEVP 129 (511)
Q Consensus 51 ~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-~sg~~~~f~~emy~~~~~g~~~l~~~ 129 (511)
...+..++|+++|+|.++.+|+.|++.+++.++++||++|.||+|++.++|.+ .+|+++.+.++||.|.|.+ ++.
T Consensus 19 ~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~----g~~ 94 (344)
T 1z7m_A 19 KINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE----GQS 94 (344)
T ss_dssp ---CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT----CCE
T ss_pred hccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC----CCE
Confidence 44556899999999999999999999999999999999999999999999964 2388888999999999987 589
Q ss_pred eeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHH
Q 010430 130 IAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 209 (511)
Q Consensus 130 l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~ 209 (511)
++|||+.|++++++++.. ++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+|+.+...+|+|++.+ +.+
T Consensus 95 l~LRpd~T~~~aR~~~~~---~~~~P~rl~y~g~vfR~e-~p~~g--R~REF~Q~g~ei~g~~~~~aDaEvi~l---~~~ 165 (344)
T 1z7m_A 95 ITLRYDFTLPLVRLYSQI---KDSTSARYSYFGKIFRKE-KRHKG--RSTENYQIGIELFGESADKSELEILSL---ALQ 165 (344)
T ss_dssp EEECCCSHHHHHHHHHTC---CSCCCEEEEEEEECCCCC-C---------CCEEEEEEEESSCHHHHHHHHHHH---HHH
T ss_pred EecCCCCcHHHHHHHHhc---CCCCCeEEEEECcEEccC-CCCCC--CcceeEEEEEEEEcCCCcHHHHHHHHH---HHH
Confidence 999999999999998876 678999999999999999 77889 999999999999998888888776555 589
Q ss_pred HHhhhh
Q 010430 210 IYEEFL 215 (511)
Q Consensus 210 i~~~lg 215 (511)
+|+.+|
T Consensus 166 ~l~~lg 171 (344)
T 1z7m_A 166 VIEQLG 171 (344)
T ss_dssp HHHHHT
T ss_pred HHHHCC
Confidence 999998
No 38
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.92 E-value=5.4e-26 Score=235.63 Aligned_cols=163 Identities=10% Similarity=-0.003 Sum_probs=130.0
Q ss_pred hhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCC-cceee
Q 010430 39 GEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFA-PEVAW 117 (511)
Q Consensus 39 ~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~-~emy~ 117 (511)
+.|-++ +.++=.-.+..++|+++|+|.++.+|+.|++.+++.++++||++|.||+|++.++|.+ +| +.+. ++||.
T Consensus 9 ~~~~~~-~~~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~-~g--~~~~~~~my~ 84 (373)
T 3rac_A 9 SAWGAR-AWEAVRGFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLR-AR--SPESSRDWIR 84 (373)
T ss_dssp ----------CCCCCCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHT-TS--CTTSCCCCCB
T ss_pred CHHHHH-HHHHHHhcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhh-cC--CccchhceEE
Confidence 569888 4555444456799999999999999999999999999999999999999999999965 45 4677 89999
Q ss_pred EeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecC-----CCCcccchhhhcccCcccccC
Q 010430 118 VTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSN-----PTPFIRSREFLWQEGHTAFAT 192 (511)
Q Consensus 118 ~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~-----~~Gl~R~REF~q~e~~~~~~~ 192 (511)
|.|.+ ++.++|||+.|+++++++++...+ +++|+|+||+|+|||+|.+| +.| |+|||+|.|+|+|+..
T Consensus 85 ~~D~~----g~~l~LRpd~T~~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e~~g~~~~~~~g--R~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 85 LFDGG----GDAVALRPEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRTDDPASLSWASG--KAAESTQVGIERIGEE 157 (373)
T ss_dssp CCCCS----SSCEEECSSSHHHHHHHHHHHHHT-TCCCCEEEEEEEEEECC--------------CEEEEEEEEEECSSC
T ss_pred EECCC----CCEEEECCcCHHHHHHHHHhcccc-CCCCeEEEEEcceEccCCCcccccccCC--ccceeEEeeeEEECCC
Confidence 99987 589999999999999999987655 68999999999999999432 678 9999999999998877
Q ss_pred -hhhhHHHHHHHHHHHHHHHhhhh
Q 010430 193 -KSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 193 -~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
...+|+|++.+ +.++|+.+|
T Consensus 158 d~~~aDaEvi~l---~~~~l~~lg 178 (373)
T 3rac_A 158 ASVDVDMDVLRL---LHEASAAAG 178 (373)
T ss_dssp CCHHHHHHHHHH---HHHHHHHHT
T ss_pred CCHHHHHHHHHH---HHHHHHHcC
Confidence 67778776555 489999988
No 39
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.71 E-value=1.8e-18 Score=150.91 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=92.3
Q ss_pred cceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCC--CCCCCCCCCCcccccCceeEeeeCcccccCCcEEE
Q 010430 312 ASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSR--DNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRA 389 (511)
Q Consensus 312 aP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~--~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtv 389 (511)
-|.||.|+||++ +..+||.+|.+.|+++|+||++|++ + .++|+|+++|++.+|||+|+||++|+++++|+|
T Consensus 7 ~P~Qv~IlpVs~------~~~~YA~~V~~~L~~~GiRvevD~~r~~-e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsV 79 (130)
T 1v95_A 7 GPVDCSVIVVNK------QTKDYAESVGRKVRDLGMVVDLIFLNTE-VSLSQALEDVSRGGSPFAIVITQQHQIHRSCTV 79 (130)
T ss_dssp CCCTEEEEESSS------GGGHHHHHHHHHHHTTTCCEEEEECTTS-SCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEE
T ss_pred CCCeEEEEEeCc------chHHHHHHHHHHHHHCCCEEEEecCCCC-CcHHHHHHHHHHcCCCEEEEEechHHhcCeeEE
Confidence 589999999983 5789999999999999999999997 7 499999999999999999999999999999999
Q ss_pred EEccC--CCccccccchHHHHHHHHHHHHHHH
Q 010430 390 VRRDN--GAKVDLPRSSLVERIKELLDEIQES 419 (511)
Q Consensus 390 r~r~~--~ek~~v~~~el~~~i~~~l~~~~~~ 419 (511)
+.|.. ++...+|++++++.+...+..+...
T Consensus 80 R~r~~~~~e~~~m~lde~i~~l~~~~~~~~~~ 111 (130)
T 1v95_A 80 NIMFGTPQEHRNMPQADAMVLVARNYERYKNE 111 (130)
T ss_dssp EECSSSCCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCccCccCHHHHHHHHHHHHHHHhhh
Confidence 99987 7788999999999998887776554
No 40
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.70 E-value=5.8e-18 Score=168.49 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=95.1
Q ss_pred HHHHHHHH--HHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhh
Q 010430 72 ETMQKFFD--AEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIR 149 (511)
Q Consensus 72 ~~I~~~~~--~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~ 149 (511)
+.|+++++ +.++++||++|.||+|++.++|.+ + + |.|.+ ++.++|||+.|++++ ++...
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~---------d-~--f~d~~----g~~l~LRpd~T~~~a---~~~~~ 64 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG---------N-F--FLDRK----GNLFSIREDFTKTVL---NHRKR 64 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS---------S-C--EEETT----SCEEEECCCHHHHHH---HHHTT
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhhcc---------c-c--cCCCC----CCEEEeCCcChHHHH---HHHhh
Confidence 35677777 999999999999999999999953 1 3 45665 589999999999998 44333
Q ss_pred cCCC-CccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010430 150 GHRD-LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 150 s~r~-LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
+++ +|+|+|++|+|||+| +|+. |||+|+++|+|+.....+|+|++.++ .++|+.+|
T Consensus 65 -~~~~~p~R~~y~g~vfR~e-~~~~-----Ref~Q~g~ei~g~~~~~~DaEvi~l~---~~~l~~lg 121 (275)
T 1usy_A 65 -YSPDSQIKVWYADFVYRYS-GSDL-----VAEYQLGLEKVPRNSLDDSLEVLEII---VESASEFF 121 (275)
T ss_dssp -CTTCCCEEEECCEEEEEEE-TTEE-----EEEEEEEEEEESCCSHHHHHHHHHHH---HHHHHHHC
T ss_pred -cCCCCceEEEEeceEEecC-CCCC-----CeeeEeCEEEecCCCchhHHHHHHHH---HHHHHHcC
Confidence 667 999999999999999 4443 99999999998887777887776655 88999988
No 41
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.59 E-value=7.2e-16 Score=154.11 Aligned_cols=135 Identities=12% Similarity=0.074 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
....+++|++.+++.+..+||+||.||.|++.++|. .+||++. .+||.+.+.. +++++|||+.++.+..+++.
T Consensus 69 ~~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~-~~g~~~~--~~m~~~~npl----~e~~~LRp~l~p~l~~~~r~ 141 (288)
T 3dsq_A 69 HRPALLELEEKLAKALHQQGFVQVVTPTIITKSALA-KMTIGED--HPLFSQVFWL----DGKKCLRPMLAPNLYTLWRE 141 (288)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHH-TTSSCC----CCTTTSCEE----ETTEEECSCSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHh-hcCCCcc--cccEEeeccc----ccchhhhhcChHHHHHHHHH
Confidence 345679999999999999999999999999999995 5777651 2565443221 35789999999999888887
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
.+.+ +++|+|+|++|+|||+|.. ..+ |+|||+|.++++++........++ ..++..+++.||
T Consensus 142 ~~~~-~~~PlrlfeiG~vFR~E~~-~~~--r~~EF~qle~~i~g~~~~~~f~el---kg~le~ll~~LG 203 (288)
T 3dsq_A 142 LERL-WDKPIRIFEIGTCYRKESQ-GAQ--HLNEFTMLNLTELGTPLEERHQRL---EDMARWVLEAAG 203 (288)
T ss_dssp HTTT-SCSCEEEEEEEEEECSCCS-SSC--CCSEEEEEEEEEETCCGGGHHHHH---HHHHHHHHHHHT
T ss_pred HHhC-CCCCEEEEEEeeEEecCCC-CCC--cCccEEEEEEEEEcCCchhhHHHH---HHHHHHHHHHcC
Confidence 7666 7899999999999999953 444 999999999999765444444444 455589999998
No 42
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.25 E-value=6.2e-12 Score=125.88 Aligned_cols=132 Identities=11% Similarity=0.101 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhccc--CCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhh
Q 010430 71 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWI 148 (511)
Q Consensus 71 ~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~--~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~ 148 (511)
++++.+.+++.+...||+||.||.|++.+.|.+ .+... .+.+++|.+. +..+|||+.++.+...++..+
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~-~~~~~~~p~~~~~~~~~--------~~~~LR~slsp~L~~~l~~n~ 149 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLTPNLYNYLRKLD 149 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH-TTCCTTSSGGGGCCEET--------TTEEECSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh-cCCCcCCchhhhheeeC--------CCeeEcccChHHHHHHHHHhh
Confidence 689999999999999999999999999998743 43322 2445677762 578999999998887776654
Q ss_pred hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccccc
Q 010430 149 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIK 221 (511)
Q Consensus 149 ~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~ 221 (511)
. ...+|+|+|++|+|||+| .++.+ |.+||+|.++++++.+. ...+++ .++..+++.+| +++..
T Consensus 150 ~-~~~~p~rlfeiG~vFR~E-~~~~~--~~~Ef~ql~~~~~g~~~--~f~elk---g~le~ll~~lG-l~~~~ 212 (290)
T 3qtc_A 150 R-ALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLVFWQMGSGC--TRENLE---SIITDFLNHLG-IDFKI 212 (290)
T ss_dssp T-TSCSSEEEEEEEEEECCC-SCSSS--CCSEEEEEEEEEESTTC--CHHHHH---HHHHHHHHHHT-CCCEE
T ss_pred c-cCCCCeEEEEEcCEEecC-CCCCc--CcchheEEEEEEEcCCh--HHHHHH---HHHHHHHHHcC-CCcEE
Confidence 3 357999999999999999 44556 89999999999977653 344444 44588888887 56543
No 43
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=98.97 E-value=5.7e-10 Score=111.72 Aligned_cols=117 Identities=15% Similarity=0.019 Sum_probs=85.4
Q ss_pred cchHHHHHHHHHHHHHHHHhcceeeeeeecccCh-hhhhhh-hhcccCCCcceeeEeccCCCCCCCceeecCCCccccch
Q 010430 65 PWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQKE-KDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYP 142 (511)
Q Consensus 65 P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~-~l~~~~-sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~ 142 (511)
..-.++|..|.+.+++.|.++||.||.||+|++. +++.+. .+ ++ .++|.+... ++.++|+...+.
T Consensus 12 ~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~--e~--a~~f~~~~~-----~~~~~L~~Spe~---- 78 (294)
T 1nnh_A 12 SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG--EG--MEPAEVEIY-----GVKMRLTHSMIL---- 78 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC--CC--CCCCEEEET-----TEEEEECSCSHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCC--Cc--ceeEEEEcC-----CCCEEeccChHH----
Confidence 3567899999999999999999999999999998 777543 33 23 457776432 357888743332
Q ss_pred hhhhhhhcCCCCccccccccceEeeeecCCC--Ccccch-hhhcccCcccccChhhhHHHH
Q 010430 143 YYSKWIRGHRDLPLKLNQWCNVVRWEFSNPT--PFIRSR-EFLWQEGHTAFATKSEADDEV 200 (511)
Q Consensus 143 ~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~--Gl~R~R-EF~q~e~~~~~~~~e~a~~e~ 200 (511)
+....... -|.|+||+|+|||+| +||. + |-+ ||+|.|++.++++..+....+
T Consensus 79 -~~~~l~~~--g~~rvf~ig~~FR~E-~pq~~~~--RH~~EFtqle~e~~~~~~~~l~~~~ 133 (294)
T 1nnh_A 79 -HKQLAIAM--GLKKIFVLSPNIRLE-SRQKDDG--RHAYEFTQLDFEVERAKMEDIMRLI 133 (294)
T ss_dssp -HHHHHHHT--TCCEEEEEEEEECCC-CGGGCSS--SCCSEEEEEEEEEETCCHHHHHHHH
T ss_pred -HHHHHhhc--CccceEEEEccEeCC-CCCCCCC--ccccceeEEEEEecCCCHHHHHHHH
Confidence 33332221 278999999999999 4554 6 888 999999999998744443333
No 44
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.65 E-value=3e-08 Score=104.04 Aligned_cols=112 Identities=15% Similarity=0.096 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+++.|.+.||.+|.||+|+... + +=..++|.+... ++.++|+...+... +.
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~------~---e~~~~~f~~~~~-----~~~~~L~~Spql~~----~~ 194 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIASA------T---EGGAQLFPVIYF-----GKEAFLAQSPQLYK----EL 194 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------S---STTCCCCEEEET-----TEEEEECSCCHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeC------C---CCCceeEEEecC-----CceEEecCCcHHHH----HH
Confidence 467889999999999999999999999999741 1 113467777533 37899973333221 11
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccch-hhhcccCcccccChhhhHHHHHHH
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEVLQI 203 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~R-EF~q~e~~~~~~~~e~a~~e~~~~ 203 (511)
+.+. +-|+||+|+|||+|. ++.+ |-+ ||+|.|++.++++.++....+..+
T Consensus 195 -~~~g---~~rvf~ig~~FR~E~-~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~l 245 (429)
T 1wyd_A 195 -MAGV---VERVFEVAPAWRAEE-SDTP--FHLAEFISMDVEMAFADYNDVMQLLEKI 245 (429)
T ss_dssp -HHHH---HSEEEEEEEEECCCC-CCSS--SCCSEEEEEEEEEETCCHHHHHHHHHHH
T ss_pred -HHhC---cCceEEEcccccccC-Cccc--cccceeeEeeeeecCCCHHHHHHHHHHH
Confidence 2221 679999999999994 4557 887 999999999998754444444333
No 45
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.60 E-value=4.8e-08 Score=102.71 Aligned_cols=111 Identities=15% Similarity=-0.025 Sum_probs=79.6
Q ss_pred chHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhh
Q 010430 66 WAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 66 ~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
.-.+++..|.+.+++.|.++||.+|.||+|+... ++ =..+||.+... ++.++|| +|-.. +.
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~------~e---~~~~~f~~~~~-----~~~~~Lr-~Spel----~~ 193 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTGA------VE---GGATLFKLKYF-----DKYAYLS-QSAQL----YL 193 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC------SS---CGGGCCEEEET-----TEEEEEC-SCSHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeec------CC---CCceeEEEeec-----CCcEEec-cChHH----HH
Confidence 3467899999999999999999999999998641 11 13467777533 3789999 22211 22
Q ss_pred hhhhcCCCCccccccccceEeeeecCCCCcccch-hhhcccCcccccChhhhHHHHH
Q 010430 146 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEVL 201 (511)
Q Consensus 146 ~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~R-EF~q~e~~~~~~~~e~a~~e~~ 201 (511)
....+ -|.|+||+|+|||+|. ++.+ |-+ ||+|.|++.++++..+....+.
T Consensus 194 ~~~~~---g~~rvf~ig~~FR~E~-~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e 244 (434)
T 1x54_A 194 EAAIF---GLEKVWSLTPSFRAEK-SRTR--RHLTEFWHLELEAAWMDLWDIMKVEE 244 (434)
T ss_dssp HHHHH---HHSEEEEEEEEECCCC-CCCS--SCCSEEEEEEEEEETCCHHHHHHHHH
T ss_pred HHHhc---CccceEEEecceecCC-CCCc--ccccEEEEeeEEEcCCCHHHHHHHHH
Confidence 22222 2779999999999994 4557 888 9999999999987544443333
No 46
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.56 E-value=7.6e-08 Score=102.58 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.++|..|.+.+|+.|.++||.||.||+|.... ++ + ..++|.+... ++.++|+-..+ +|.+
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~-----~~---~-ga~~f~~~~~-----~~~~~L~~Spq-----l~~k 237 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAP-----SE---G-GSSVFEVTYF-----KGKAYLAQSPQ-----FNKQ 237 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----SS---S-SSCCCEEEET-----TEEEEECSCTH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec-----CC---C-CcccceeccC-----CccEEcccChH-----HHHH
Confidence 468899999999999999999999999998843 11 1 2357877653 37899983332 1333
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccch-hhhcccCccccc-ChhhhHHHHHHHH
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFA-TKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~R-EF~q~e~~~~~~-~~e~a~~e~~~~l 204 (511)
.+.. .-+-|+||+|+|||+|. ++.+ |-+ ||+|.|++..+. +.++..+.+..++
T Consensus 238 ~l~~--~g~~rvy~ig~~FR~E~-~~~~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll 292 (487)
T 1eov_A 238 QLIV--ADFERVYEIGPVFRAEN-SNTH--RHMTEFTGLDMEMAFEEHYHEVLDTLSELF 292 (487)
T ss_dssp HHHH--TTCCEEEEEEEEECCCC-CCCT--TCCSEEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred HHHh--cCCCceEEEeccEecCC-CCCC--ccchhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 3211 12469999999999994 4557 888 999999997554 4555544444444
No 47
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.52 E-value=5.1e-08 Score=102.12 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhh
Q 010430 66 WAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 66 ~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
.-.+++..|.+.+++.|.++||.||.||+|++... .+ ..+||.+... ++.++|+-..+. +.
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~----e~-----~~~~f~~~~~-----g~~~~L~~Spel-----~~ 183 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA----EG-----GSGLFGVDYF-----EKRAYLAQSPQL-----YK 183 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------------CHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCC----CC-----CceeEEEeeC-----CCcEEeeeCHHH-----HH
Confidence 34689999999999999999999999999987521 11 2356766432 367899732221 22
Q ss_pred hhhhcCCCCccccccccceEeeeecCCCCcccch-hhhcccCccccc-ChhhhHHHHHHHH
Q 010430 146 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFA-TKSEADDEVLQIL 204 (511)
Q Consensus 146 ~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~R-EF~q~e~~~~~~-~~e~a~~e~~~~l 204 (511)
+.+.+ . +-|+||+|+|||+|. ++.+ |-+ ||+|.|++.+++ +.++..+.+..++
T Consensus 184 ~~l~~--g-~~rvf~ig~~FR~E~-~~~~--RH~pEFtqle~e~~~~~d~~dlm~l~e~ll 238 (422)
T 1n9w_A 184 QIMVG--V-FERVYEVAPVWRMEE-HHTS--RHLNEYLSLDVEMGFIADEEDLMRLEEALL 238 (422)
T ss_dssp HHHHH--H-HSEEEEEEEC----------------CCEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred HHHhh--C-CCceeEEeCceECCC-CCCC--cccceeEEeeeeeeCCCCHHHHHHHHHHHH
Confidence 22221 1 359999999999994 4567 888 999999999998 6544444443333
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.45 E-value=3e-07 Score=98.04 Aligned_cols=122 Identities=13% Similarity=0.036 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.+.. .| =..++|.+.... .+..++|| +|. .+|.+
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~G----a~a~~F~~~~~~---~~~~~yLr-~Sp----qLylk 235 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GG----AAARPFITHHNA---LDMTLYMR-IAI----ELHLK 235 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSSCCCEEEETT---TTEEEEEC-SCS----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CC----CcccceEecccC---CCceeEEe-cCH----HHHHH
Confidence 457888999999999999999999999998641 22 123677665221 25789998 332 24444
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhh
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 213 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~ 213 (511)
.+.. .-.-|+||+|+|||+|...+ . |..||+|.|++.++++.++..+.+..++ ..+++.
T Consensus 236 ~l~v--~G~~rVyeig~~FR~E~~~~-r--H~pEFT~lE~e~af~d~~dlm~l~E~ll---~~l~~~ 294 (493)
T 3a74_A 236 RLIV--GGLEKVYEIGRVFRNEGIST-R--HNPEFTMLELYEAYADFRDIMKLTENLI---AHIATE 294 (493)
T ss_dssp HHHH--TTCCEEEEEEEEECCCCCBT-T--BCSEEEEEEEEEETCCHHHHHHHHHHHH---HHHHHH
T ss_pred HHhh--cccCceEEECccccCCCCCc-c--cCCceeEEEEEecCCCHHHHHHHHHHHH---HHHHHH
Confidence 4321 12459999999999996533 4 9999999999999988665555444444 444444
No 49
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.32 E-value=7e-07 Score=91.05 Aligned_cols=123 Identities=15% Similarity=0.027 Sum_probs=81.9
Q ss_pred eccc----hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccC-CCCCCCceeecCCCc
Q 010430 63 IRPW----AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG-ESDLEVPIAIRPTSE 137 (511)
Q Consensus 63 ~~P~----g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g-~~~l~~~l~LRPt~e 137 (511)
|.|. -.+++..|.+.+|+.|.+.||.||.||+|.+..- +.++ .+.|.+..-+ ....+.+++|+-..
T Consensus 27 ~~~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---~~a~-----~~~F~~~~~~~~~~~~~~~yL~~Sp- 97 (345)
T 3a5y_A 27 WQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV---TDIH-----LVPFETRFVGPGHSQGMNLWLMTSP- 97 (345)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC---CCTT-----CCCCEEEECCSTTSCCEEEEECSCS-
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC---CCCc-----cceEEEEecCcccccCCCEeecCCH-
Confidence 5554 4789999999999999999999999999986431 1111 2334433221 01112467775433
Q ss_pred cccchhhhhh-hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010430 138 TVMYPYYSKW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 138 ~~~~~~~~~~-~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.+|.+. +.+. + =|+||+|+|||+|.. +.- |..||+|.|++..+++.++..+.+..++
T Consensus 98 ----ql~~k~l~~~g--~-~rvyqIg~~FR~E~~-~~r--H~pEFt~lE~e~af~d~~d~m~~~E~li 155 (345)
T 3a5y_A 98 ----EYHMKRLLVAG--C-GPVFQLCRSFRNEEM-GRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 155 (345)
T ss_dssp ----HHHHHHHHHTT--C-CSEEEEEEEECCCCC-BTT--BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcC--C-CcEEEEEcceeCCCC-ccc--ccchhheeeeeeeCCCHHHHHHHHHHHH
Confidence 334442 2222 3 289999999999966 445 8999999999999988666555544444
No 50
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.30 E-value=1.1e-06 Score=93.84 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.+. ..| =..++|.+...- ++..++||-..+ +|.+
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~-----~~G----a~ar~F~t~~~~---~~~~~yL~~Spq-----Lylk 244 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGG----ASARPFITHHNA---LDLDMYLRIAPE-----LYLK 244 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESS-----CCS----SCCCCCEEEETT---TTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEec-----CCC----CcccceEeccCC---CCceEEeccCHH-----HHHH
Confidence 45778899999999999999999999999863 122 123556554221 257899983332 4444
Q ss_pred hh-hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhh
Q 010430 147 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 213 (511)
Q Consensus 147 ~~-~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~ 213 (511)
.+ .+ . .=|+||+|+|||+|...+ . |..||+|.|++.++++.++....+..++ ..+++.
T Consensus 245 ~L~v~--G-~~rVyeIg~~FR~E~~~~-r--H~pEFt~lE~e~af~d~~dlm~l~E~li---~~~~~~ 303 (504)
T 1e1o_A 245 RLVVG--G-FERVFEINRNFRNEGISV-R--HNPEFTMMELYMAYADYHDLIELTESLF---RTLAQE 303 (504)
T ss_dssp HHHHH--T-CCEEEEEEEEECCCCCCC----CCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHH
T ss_pred HHhhc--C-CCcEEEEcccccCCCCCc-c--ccCceeeeeeeecCCCHHHHHHHHHHHH---HHHHHH
Confidence 43 22 1 248999999999996533 4 9999999999999998666555554444 444444
No 51
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.08 E-value=4.3e-06 Score=87.95 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|..... .|+. ++|.+.-- +..++|+-..+ +|.+
T Consensus 131 ~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~----eG~~-----~~F~~~~~-----g~~~~L~~Spq-----Lylq 191 (435)
T 2xgt_A 131 LLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV----EGGS-----TLFNLDYF-----GEQSFLTQSSQ-----LYLE 191 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS----SCTT-----SCCEEEET-----TEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC----CCch-----hceeeccC-----CcccccCCChH-----HHHH
Confidence 5688899999999999999999999999976543 2222 24444332 36778864332 3444
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccch-hhhcccCcccccChhhhHHHHHHHH
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~R-EF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.... .+ =|+||+|+|||+|.. ... |-. ||+|.|++.++++.++....+..++
T Consensus 192 ~l~~--g~-~rvfeIg~~FR~E~~-~t~--RH~~EFT~lE~e~af~d~~d~m~~~E~li 244 (435)
T 2xgt_A 192 TCIP--TL-GDVFCIAQSYRAEKS-RTR--RHLAEYAHVEAECPFITLDDLMEKIEELV 244 (435)
T ss_dssp HHHH--HH-CSEEEEEEEECCCSS-CCT--TCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred Hhhh--cc-CceEEEecceecCCC-Ccc--ccccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 4322 12 389999999999953 223 545 9999999999998777666665555
No 52
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.06 E-value=6.4e-06 Score=87.42 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeee-ecccChh----hhhhhhhcccCCCcce---eeEeccC----------------
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYF-PLFVSPT----VLQKEKDHIEGFAPEV---AWVTKSG---------------- 122 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~t-P~l~~~~----l~~~~sg~~~~f~~em---y~~~~~g---------------- 122 (511)
+..-...+.+.+++.|...||+++.+ |.+++.. .+.....| -+.+| |.+.+-.
T Consensus 223 ~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dH---PaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~ 299 (508)
T 3l4g_A 223 HLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQH---PARDQHDTFFLRDPAEALQLPMDYVQRVKRT 299 (508)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSS---TTSSTTTSCBBSTTCBCSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCC---cccccCceEEEcCccccccccHHHHHhhhhh
Confidence 45667889999999999999999886 6665431 11111111 11122 4454310
Q ss_pred ----CC-----------CCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCc
Q 010430 123 ----ES-----------DLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGH 187 (511)
Q Consensus 123 ----~~-----------~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~ 187 (511)
+. +..+..+||+...+...+.+.......+..|+|+|++|+|||+|.. ... ++++|+|.++.
T Consensus 300 He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~-Dat--HlpeFhQlegl 376 (508)
T 3l4g_A 300 HSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETL-DAT--HLAEFHQIEGV 376 (508)
T ss_dssp HHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCC-CSS--SCSEEEEEEEE
T ss_pred hhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCC-CCC--cCCeEEEEEEE
Confidence 00 0014689999999988888776554234689999999999999943 344 78899999998
Q ss_pred ccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010430 188 TAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 188 ~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
+++ ..-...++..++ ..+++.+|
T Consensus 377 ~~~--~~v~f~dLKg~L---e~~l~~lG 399 (508)
T 3l4g_A 377 VAD--HGLTLGHLMGVL---REFFTKLG 399 (508)
T ss_dssp EEE--ESCCHHHHHHHH---HHHHHTTT
T ss_pred EEC--CCCCHHHHHHHH---HHHHHHcC
Confidence 754 222334555444 77888887
No 53
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.04 E-value=5.6e-06 Score=86.93 Aligned_cols=114 Identities=12% Similarity=0.103 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.+... -|+ -++|.+...+ .+++|+...+ +|.+
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~----eg~-----~~~f~~~~~~-----~~~yL~~Spq-----l~~q 196 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT----EGG-----TELFPMKYFE-----EDAFLAQSPQ-----LYKQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS----SCS-----SSCCEEEETT-----EEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC----CCC-----ccceeEeeCC-----ccEEEecChH-----HHHH
Confidence 3678889999999999999999999999987531 122 2355555433 6788865443 3444
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccc-hhhhcccCcccccC-hhhhHHHHHHHH
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRS-REFLWQEGHTAFAT-KSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~-REF~q~e~~~~~~~-~e~a~~e~~~~l 204 (511)
.+... .+ =|+||+|+|||+|...+ + |- -||+|.|++..+++ .++..+.+..++
T Consensus 197 ~l~~~-g~-~rvf~i~~~FR~E~~~t-~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li 251 (438)
T 3nem_A 197 IMMAS-GL-DRVYEIAPIFRAEEHNT-T--RHLNEAWSIDSEMAFIEDEEEVMSFLERLV 251 (438)
T ss_dssp HGGGT-TC-CEEEEEEEEECCCSSCC-T--TCCSEEEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred HHHhc-CC-CceEEEcceEECCCCCC-c--ccccceeeeeeeeccCccHHHHHHHHHHHH
Confidence 33211 22 39999999999995422 2 44 49999999999998 777766666555
No 54
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.95 E-value=1.5e-05 Score=85.45 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.+.. .| =.-+.|.+.+. -++.+++|+-..+ +|.+
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gG----a~a~~F~t~~~---~~~~~~yL~~Spq-----L~lk 237 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GG----AVAKPFITYHN---ELDMNLYMRIAPE-----LYHK 237 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSCCCCEEEET---TTTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CC----ccccceeeecc---cCCcceEeeCCHH-----HHHH
Confidence 356778899999999999999999999998631 22 11244533321 1246788874443 4444
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.+..- .+ =|+|++|+|||+|.+.++ +.-||+|.|++.++++.++....+..++
T Consensus 238 ~liv~-g~-~rVyeig~~FR~E~~~tr---H~pEFtmlE~e~af~d~~dlm~l~E~li 290 (521)
T 3bju_A 238 MLVVG-GI-DRVYEIGRQFRNEGIDLT---HNPEFTTCEFYMAYADYHDLMEITEKMV 290 (521)
T ss_dssp HHHHT-TC-CEEEEEEEEECCSCCBTT---BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred HHHhc-Cc-CceEEEEcceeCCCCCCc---cchhhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 32211 22 289999999999976553 8889999999999998776666655555
No 55
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.85 E-value=2.1e-05 Score=83.06 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|..... + |. .++|.+.-- +.+++|+-..+ +|.+
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---e-Gg-----~~~f~~~~~-----~~~~~L~~Spq-----L~lq 215 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---E-GG-----STLFKLQYF-----NEPAYLTQSSQ-----LYLE 215 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC---------------CCCCEEEET-----TEEEEECSCCH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---C-Cc-----ccccccccc-----CCCcccccCHH-----HHHH
Confidence 4688999999999999999999999999976442 1 21 123433322 36677764442 3333
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCccc-chhhhcccCcccccChhhhHHHHHHHH
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR-SREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R-~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.+.. .+ =|+||+|+|||+|...+. | .-||+|.|++.++++.++..+.+..++
T Consensus 216 ~l~~--g~-~rVyeig~~FR~E~~~t~---rH~pEFtmlE~e~af~d~~d~m~~~E~li 268 (456)
T 3m4p_A 216 SVIA--SL-GKSFCMLSSYRAEQSRTV---RHLAEYLHLEAELPFISFEDLLNHLEDLV 268 (456)
T ss_dssp TTHH--HH-SSEEEEEEEECCCSCCCS---SCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHh--cc-CcEEEEEhheecCCCCCC---cchHHHHHhHHHHhcCCHHHHHHHHHHHH
Confidence 3221 12 389999999999954221 2 249999999999998877766666555
No 56
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.83 E-value=2.4e-05 Score=83.75 Aligned_cols=123 Identities=12% Similarity=0.053 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.+. ..|- ....|..... .++.+++|+-.. .+|.+
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~-----~gGA----~a~pF~t~~n---~~~~~~yL~~Sp-----qLylk 265 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPI-----PGGA----AAKPFVTHHN---ALDMEMFLRIAP-----ELYLK 265 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS-----CCSS----SSCCCEEEET---TTTEEEEECSCS-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc-----CCCC----cccccccccc---cCCcceecccCH-----HHHHH
Confidence 46888899999999999999999999999853 1221 1123322211 124677886433 34444
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
.+... .+ =|+||+|+|||+|...+ -+.-||+|.|++.++++.++....+..++ ..+++.+
T Consensus 266 ~L~v~-G~-~rVyeIg~~FR~E~~~~---rH~pEFtmlE~e~af~d~~dlm~l~E~li---~~v~~~v 325 (529)
T 4ex5_A 266 RLIVG-GF-ERVFEINRNFRNEGVSP---RHNPEFTMMEFYAAYTDYRWLMDFTERLI---RQAAVDA 325 (529)
T ss_dssp HHHHT-TC-SEEEEEEEEECCSCCBT---TBCSEEEEEEEEEETCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHhc-CC-CcEEEeehheecCCCCC---CcccHhHhhhhhhhcCCHHHHHHHHHHHH---HHHHHHH
Confidence 32211 12 38999999999996543 37899999999999998777666555554 4444443
No 57
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.80 E-value=3e-05 Score=84.11 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|...||.||.||+|....- .| +.+ |.+...-. -+.-|+|+ .| -.+|++
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~----eG-----Ar~-F~v~~~~~--~~~~y~L~-qS----PQl~kq 205 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP----EG-----ARD-FLVPYRHE--PGLFYALP-QS----PQLFKQ 205 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SS-----SCC-CEEECTTS--TTEEEECC-SC----SHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CC-----CCC-cccccccc--CCceeECc-cC----HHHHHH
Confidence 4678899999999999999999999999985321 12 122 44432110 01334574 33 245555
Q ss_pred hh-hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010430 147 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 147 ~~-~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
.+ .+ .+. |+||+|+|||+|...+. |--||+|.|++..|++.++....+..++ ..+++.+
T Consensus 206 ~Lmv~--G~~-rvfqI~~~FR~E~~~~~---r~pEFT~lE~e~af~d~~dvm~~~E~li---~~i~~~v 265 (580)
T 1l0w_A 206 MLMVA--GLD-RYFQIARCFRDEDLRAD---RQPDFTQLDLEMSFVEVEDVLELNERLM---AHVFREA 265 (580)
T ss_dssp HHHHT--TCS-EEEEEEEEECCCCCCSS---CCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHh--ccC-CeEEEeceeeCCCCCCC---cCCCccceeeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 43 22 222 89999999999965433 6679999999999998877766666555 5555554
No 58
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.80 E-value=3.1e-05 Score=84.21 Aligned_cols=122 Identities=14% Similarity=0.155 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|...||.||.||+|....- .| +.+ |.+...-. -+.-++|+ .| -.+|++
T Consensus 137 ~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~----eG-----Ar~-F~v~~~~~--~~~~y~L~-qS----PQl~kq 199 (585)
T 1c0a_A 137 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP----EG-----ARD-YLVPSRVH--KGKFYALP-QS----PQLFKQ 199 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SS-----SCC-CEEECSSS--TTCEEECC-SC----SHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CC-----Ccc-ceeccccc--CCceEeCc-cC----HHHHHH
Confidence 4678899999999999999999999999985321 12 122 44432210 02334574 33 245555
Q ss_pred hh-hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010430 147 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 147 ~~-~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
.+ .+ .+. |+||+|+|||+|...+. |--||+|.|++..|++.++..+.+..++ ..+++.+
T Consensus 200 ~Lmv~--G~~-rvfqI~~~FR~E~~~t~---r~pEFT~lE~e~af~d~~dvm~~~E~li---~~i~~~v 259 (585)
T 1c0a_A 200 LLMMS--GFD-RYYQIVKCFRDEDLRAD---RQPEFTQIDVETSFMTAPQVREVMEALV---RHLWLEV 259 (585)
T ss_dssp HHHHT--TCC-EEEEEEEEECCCCCBTT---BCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHhc--CCC-ceEEEeceeecCCCCCC---cCcccceeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 43 22 222 89999999999965433 6679999999999999877776666665 5555543
No 59
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.69 E-value=5.1e-05 Score=82.50 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHH-hcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhh
Q 010430 67 AMSIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
-.+++..|...+|+.|. +.||.||.||+|.... ..|- .+ |.+.... .+..++|+-.. .+|+
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st----~~GA-----~~-F~v~~~~---~g~~~~L~qSp-----ql~k 208 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT----PGGA-----KE-FLVPSRE---PGKFYSLPQSP-----QQFK 208 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC----CSSS-----CC-CEEECSS---TTCEEECCSST-----THHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC----CCCC-----cC-ceecccc---CCcccccccCH-----HHHH
Confidence 36788899999999995 7999999999997532 1221 11 4443221 14667775322 3444
Q ss_pred hhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhh
Q 010430 146 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 213 (511)
Q Consensus 146 ~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~ 213 (511)
+.+..- .+ =|+||+++|||+|...+ - |.-||+|.|++..+++.++....+..++ ..+++.
T Consensus 209 q~l~v~-g~-~rvfqi~~~FR~E~~~t-~--r~pEFt~lE~e~af~d~~d~m~~~E~l~---~~~~~~ 268 (617)
T 4ah6_A 209 QLLMVG-GL-DRYFQVARCYRDEGSRP-D--RQPEFTQIDIEMSFVDQTGIQSLIEGLL---QYSWPN 268 (617)
T ss_dssp HHHHHT-SC-SEEEEEEEEECCCSSCS-S--SCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHSCS
T ss_pred HHHHhc-cc-CcEEEEEhheecccCCC-C--cCcceecceeeecCCCHHHHHHHHHHHH---HHHHHH
Confidence 443211 12 28999999999996533 3 8899999999999998777666655554 455543
No 60
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.52 E-value=7.6e-05 Score=80.06 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.+..- + |.. ++|.+.-. +.+++|+-.. .+|.+
T Consensus 243 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---e-gga-----~~F~v~~~-----~~~~yL~~Sp-----ql~~k 303 (548)
T 3i7f_A 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---E-GGS-----NIFEVKYF-----DRKAYLAQSP-----QLYKQ 303 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------------CCBCSCT-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---C-CCc-----ceeEEecC-----CCceEeccCH-----HHHHH
Confidence 3688899999999999999999999999987541 1 222 23333222 2456775433 34444
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCccccc-ChhhhHHHHHHHH
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~-~~e~a~~e~~~~l 204 (511)
.+.. ..+ =|+||+|+|||+|.+.+.= -.-||+|.|++..+. +.++....+..++
T Consensus 304 ~ll~-~g~-~rVfeI~~~FR~E~~~t~R--Hl~EFtmlE~e~af~~d~~d~m~~~E~li 358 (548)
T 3i7f_A 304 MAIM-GDF-RKVFEVGPVFRAENSNTRR--HLTEFEGLDIEMEIVENYHECIDVMEKLF 358 (548)
T ss_dssp HHHT-TTC-CEEEEEEEECCCSCCCSSS--CCSCEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred HHHh-cCc-CcEEEEeeeEecCCCCCCC--cchhhhchhhhhhhhcCHHHHHHHHHHHH
Confidence 3322 122 3899999999999642210 235999999997666 4566655555554
No 61
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.20 E-value=0.00025 Score=75.69 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=55.9
Q ss_pred ceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecC-CCCcccchhhhcccCcccccChhhhHHHHHHHHHHH
Q 010430 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 207 (511)
Q Consensus 129 ~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~-~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~ 207 (511)
..+|||+..+++....+... +++..|+|+|++|+|||+| .+ +.+ +.+||+|.++.+++.... -.++..+ .
T Consensus 180 ~svLRTsLlPgLL~~lr~N~-~r~~~pvrLFEIG~VFr~d-~~~d~t--h~~Ef~qLagli~G~~vd--f~dLKgi---l 250 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIA-DKLPLPIKLFSIDRCFRRE-QGEDAT--RLYTYFSASCVLVDEELS--VDDGKAV---A 250 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTT-TTSCSSEEEEEEEEEECCC-TTCSSS--CCSEEEEEEEEEECSSCC--HHHHHHH---H
T ss_pred ccccCccchhhHHHHHHHHH-hCCCCCeeEEEEeeEEecC-cccccc--ccceeeEEEEEEECCCCC--HHHHHHH---H
Confidence 36899999887766655543 3457899999999999987 33 344 679999999998765322 2334444 4
Q ss_pred HHHHhhhh
Q 010430 208 RRIYEEFL 215 (511)
Q Consensus 208 ~~i~~~lg 215 (511)
..+++.+|
T Consensus 251 E~LL~~LG 258 (534)
T 2du3_A 251 EALLRQFG 258 (534)
T ss_dssp HHHHGGGT
T ss_pred HHHHHHcC
Confidence 78888887
No 62
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.20 E-value=0.00057 Score=69.58 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhh-hhh---hhhcccCCCcceeeEeccCC-------CCCCCceeecCC
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQK---EKDHIEGFAPEVAWVTKSGE-------SDLEVPIAIRPT 135 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~---~sg~~~~f~~emy~~~~~g~-------~~l~~~l~LRPt 135 (511)
+..-...+.+.+++.|...||+|+.+|.+++... |.. ...|-..=..+.|++..-.. ....+..+||+.
T Consensus 99 ~~hp~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~ 178 (350)
T 1b7y_A 99 GLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTH 178 (350)
T ss_dssp BCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSS
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeecc
Confidence 3345678889999999999999999999987532 211 01110000022344542110 000256789998
Q ss_pred CccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010430 136 SETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 136 ~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
..+...+.... ...|+|++++|+|||.|..... ...||+|.++..++..-. -.. +......+++.+
T Consensus 179 tsp~llr~l~~-----~~~piriFEiGrVFR~d~~d~t---H~pEF~qlegl~~g~~v~--f~d---LKg~le~ll~~l 244 (350)
T 1b7y_A 179 TSPMQVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT---HEAVFHQLEGLVVGEGIA--MAH---LKGAIYELAQAL 244 (350)
T ss_dssp STHHHHHHHHH-----CCSSEEEEEEEEEECCCCCCSS---CCSEEEEEEEEEEETTCC--HHH---HHHHHHHHHHHH
T ss_pred chHHHHHHHHh-----cCCCeeEEEeeeEEECCCCCCC---CCChhHEEEEEEECCCCC--HHH---HHHHHHHHHHhh
Confidence 88777665554 3679999999999998742221 457999999998775221 122 333346666666
No 63
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.10 E-value=0.00059 Score=67.93 Aligned_cols=129 Identities=12% Similarity=0.011 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhh-hhhh---hhcccCCCcceeeEeccCCCCCCCceeecCCCccccch
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKE---KDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYP 142 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~~---sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~ 142 (511)
+..-...+.+.+++.|...||+||.+|.+.+... |..- ..|-..-..+.+++ .+..+||++..+.+..
T Consensus 51 ~~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l--------~e~~vLRtsl~p~ll~ 122 (294)
T 2rhq_A 51 SKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYI--------TDEILMRTHTSPVQAR 122 (294)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBS--------SSSEEECSSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEE--------cCcceeeccCHHHHHH
Confidence 3344677889999999999999999998877532 2110 01100000011223 2457899999988877
Q ss_pred hhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010430 143 YYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 143 ~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
..+.+. +..|+|+|++|+|||.+..... ...||+|.++...+.... -.. +......+++.+
T Consensus 123 ~l~~N~---~~~~~riFEiG~Vfr~d~~d~~---h~~Ef~~Le~~~~g~~~d--f~d---lKg~le~ll~~l 183 (294)
T 2rhq_A 123 TMEKRN---GQGPVKIICPGKVYRRDSDDAT---HSHQFTQIEGLVVDKNIK--MSD---LKGTLELVAKKL 183 (294)
T ss_dssp HHHHTT---TCSCEEEEEEEEEECCCCCBTT---BCSEEEEEEEEEEESSCC--HHH---HHHHHHHHHHHH
T ss_pred HHHhcC---CCCCccEEEEcCEEecCCCCCC---CCChhhEEEEEEECCCCC--HHH---HHHHHHHHHHHH
Confidence 776654 3679999999999997632221 346999999988774211 122 223346666665
No 64
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.0029 Score=67.47 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=53.5
Q ss_pred ceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHH
Q 010430 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYR 208 (511)
Q Consensus 129 ~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~ 208 (511)
..+||++..+++....+.... .+..|+|++++|.|||.+...... +.+||+|.++-+++.. -...++.. ...
T Consensus 192 ~svLRTsLlPGLL~~vr~N~~-r~~~pvrlFEiGrVFr~D~~~d~t--h~~ef~qLaglv~G~~--vdF~DLKG---~Le 263 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSSLIK-KRKLPLKLFSIDRCFRREQREDRS--HLMSYHSASCVVVGED--VSVDDGKV---VAE 263 (549)
T ss_dssp EEECCSTTHHHHHHHHHTTTT-TSCSSEEEEEEEEECCCCSSCSSS--CCSCEEEEEEEEECTT--CCHHHHHH---HHH
T ss_pred ccccccccchhHHHHHHHHHh-cCCCCeEEEEEeeEEecCCcccCc--CCCcceEEEEEEECCC--CCHHHHHH---HHH
Confidence 457998888766565555433 347899999999999976310222 5689999999886642 12233333 447
Q ss_pred HHHhhhh
Q 010430 209 RIYEEFL 215 (511)
Q Consensus 209 ~i~~~lg 215 (511)
.+++.+|
T Consensus 264 ~ll~~LG 270 (549)
T 2du7_A 264 GLLAQFG 270 (549)
T ss_dssp HHHGGGT
T ss_pred HHHHHcC
Confidence 8888887
No 65
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.09 E-value=0.003 Score=63.53 Aligned_cols=126 Identities=10% Similarity=0.101 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChh-hhhh---hhhcccCCCcceeeEeccCCCCCCCceeecCCCccccch
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYP 142 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~-l~~~---~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~ 142 (511)
+..-...+.+.+++.|...||+++.+|.+++.. -|.. ...|-..-..+.|.+. +..+||+...+...+
T Consensus 105 ~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~--------e~~vLRThtsp~~lr 176 (327)
T 3pco_A 105 GLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD--------TTRLLRTQTSGVQIR 176 (327)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS--------SSCEECSCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC--------CCceecccCCHHHHH
Confidence 345667888999999999999999999886522 1210 1111000001123332 457899888777655
Q ss_pred hhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010430 143 YYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 143 ~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
..+. ...|+|++++|.|||.+. .. . .+.+|+|.++-.++. .-.-.++..++ ..+++.+
T Consensus 177 ~l~~-----~~~pirifeiGrVyR~d~-d~-t--h~p~fhqlegl~v~~--~v~f~dLKg~L---e~~l~~l 234 (327)
T 3pco_A 177 TMKA-----QQPPIRIIAPGRVYRNDY-DQ-T--HTPMFHQMEGLIVDT--NISFTNLKGTL---HDFLRNF 234 (327)
T ss_dssp HHTT-----CCSSCCBCCEECCBCSCC-BT-T--BCSBCCEEEEEEEET--TCCHHHHHHHH---HHHHHHH
T ss_pred HHHh-----CCCCeeEEeeccEEecCC-Cc-c--cCCcccEEEEEEECC--CCCHHHHHHHH---HHHHHHH
Confidence 5543 468999999999999872 22 1 456799988766442 11233444444 5555554
No 66
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.67 E-value=0.0095 Score=64.21 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=52.1
Q ss_pred ceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeec-CCCCcccchhhhcccCcccccChhhhHHHHHHHHHHH
Q 010430 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 207 (511)
Q Consensus 129 ~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~-~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~ 207 (511)
.-+||++..+++....+.... .+..|+|++++|.|||.+.. ... ...||+|.++-+.+... .-.++ ....
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~v--dF~DL---KGvL 269 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGV--DINDG---KAIA 269 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTC--CHHHH---HHHH
T ss_pred cCcccccchhhHHHHHHHHHh-cCCCCeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCC--CHHHH---HHHH
Confidence 468999888866565555433 34789999999999997631 111 34899999988866421 12233 3444
Q ss_pred HHHHhhhh
Q 010430 208 RRIYEEFL 215 (511)
Q Consensus 208 ~~i~~~lg 215 (511)
..+++.+|
T Consensus 270 E~LL~~LG 277 (648)
T 2odr_B 270 EGLLSQFG 277 (648)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHcC
Confidence 77788777
No 67
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.66 E-value=0.0098 Score=64.21 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=52.1
Q ss_pred ceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeec-CCCCcccchhhhcccCcccccChhhhHHHHHHHHHHH
Q 010430 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 207 (511)
Q Consensus 129 ~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~-~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~ 207 (511)
.-+||++..+++....+.... .+..|+|++++|.|||.+.. ... ...||+|.++-+.+... .-.++ ....
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~v--dF~DL---KGvL 269 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGV--DINDG---KAIA 269 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTC--CHHHH---HHHH
T ss_pred cCcccccchhhHHHHHHHHHh-cCCCCeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCC--CHHHH---HHHH
Confidence 468999888866565555433 34789999999999997631 111 34899999988866421 12233 3344
Q ss_pred HHHHhhhh
Q 010430 208 RRIYEEFL 215 (511)
Q Consensus 208 ~~i~~~lg 215 (511)
..+++.+|
T Consensus 270 E~LL~~LG 277 (665)
T 2odr_A 270 EGLLSQFG 277 (665)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHcC
Confidence 77788777
No 68
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.65 E-value=0.0099 Score=64.28 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=52.1
Q ss_pred ceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeec-CCCCcccchhhhcccCcccccChhhhHHHHHHHHHHH
Q 010430 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 207 (511)
Q Consensus 129 ~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~-~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~ 207 (511)
.-+||++..+++....+.... .+..|+|++++|.|||.+.. ... ...||+|.++-+.+... .-.++ ....
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~v--DF~DL---KGvL 269 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGV--DINDG---KAIA 269 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTC--CHHHH---HHHH
T ss_pred cCcccccchhhHHHHHHHHHh-CCCCCeEEEEeccEEecCcccccc---CCCcceEEEEEEECCCC--CHHHH---HHHH
Confidence 468999888866565555433 34789999999999997631 111 34899999988866421 12233 3444
Q ss_pred HHHHhhhh
Q 010430 208 RRIYEEFL 215 (511)
Q Consensus 208 ~~i~~~lg 215 (511)
..+++.+|
T Consensus 270 E~LL~~LG 277 (685)
T 2odr_D 270 EGLLSQFG 277 (685)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHcC
Confidence 77788777
No 69
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.48 E-value=0.025 Score=61.53 Aligned_cols=131 Identities=9% Similarity=0.007 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhcceeeeeeecccChhh-hhhhhhcccCCCcceeeEeccCCCCC-CCceeecCCCccccchhhhh
Q 010430 69 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 69 ~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~~sg~~~~f~~emy~~~~~g~~~l-~~~l~LRPt~e~~~~~~~~~ 146 (511)
.-.+++.+.+++.+...||+|+.|+.|++.+. +. .-+.-.. ..+...+.. ++ .+.-+||++.-+++....+.
T Consensus 391 ~~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~-~l~~~~~-~~~~v~L~N----Pis~e~svmRtsLlpgLL~~l~~ 464 (589)
T 3l4g_B 391 FPLNKLTELLRHDMAAAGFTEALTFALCSQEDIAD-KLGVDIS-ATKAVHISN----PKTAEFQVARTTLLPGLLKTIAA 464 (589)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTG-GGTSCTT-SSCCCBBSS----CSSGGGSEECSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHH-HhCCCCC-CCCeEEEcC----CCchhHhHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999998763 32 1111000 012222321 11 24468999998888777776
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010430 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
+.. +..|+|+|++|+|||.+..... ..+|+.+..+.+.+... .-.++..+ ...+++.+|
T Consensus 465 N~~--~~~~vrlFEiG~Vf~~d~~~~~---~~~e~~~la~~~~g~~~--~f~~lkg~---le~ll~~lg 523 (589)
T 3l4g_B 465 NRK--MPLPLKLFEISDIVIKDSNTDV---GAKNYRHLCAVYYNKNP--GFEIIHGL---LDRIMQLLD 523 (589)
T ss_dssp TTT--SCSCEEEEEEEEEEEECTTSTT---SEEEEEEEEEEEESSSC--CHHHHHHH---HHHHHHHTT
T ss_pred Hhc--CCCceEEEEeeeEEecCCcccc---CCccccEEEEEEECCCC--CHHHHHHH---HHHHHHHcC
Confidence 643 3579999999999998733222 24677777766544321 12333333 367777776
No 70
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.38 E-value=0.01 Score=64.34 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=52.1
Q ss_pred ceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeec-CCCCcccchhhhcccCcccccChhhhHHHHHHHHHHH
Q 010430 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 207 (511)
Q Consensus 129 ~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~-~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~ 207 (511)
.-+||++..+++....+.... .+..|+|++++|.|||.+.. ... ...||+|.++-+.+... .-.++ ....
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~EfhqLeGlv~G~~v--DF~DL---KGvL 269 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGV--DINDG---KAIA 269 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTC--CHHHH---HHHH
T ss_pred cCcccccchhhHHHHHHHHHh-CCCCCeEEEEEeeEEccCcccccc---CCCcceEEEEEEECCCC--CHHHH---HHHH
Confidence 458999888866665555433 34789999999999997631 111 34899999988866421 12233 3444
Q ss_pred HHHHhhhh
Q 010430 208 RRIYEEFL 215 (511)
Q Consensus 208 ~~i~~~lg 215 (511)
..+++.+|
T Consensus 270 E~LL~~LG 277 (701)
T 2odr_C 270 EGLLSQFG 277 (701)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHcC
Confidence 77788777
No 71
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=93.24 E-value=0.076 Score=59.71 Aligned_cols=137 Identities=9% Similarity=-0.003 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcc-eeeEeccCCCCC-CCceeecCCCccccchhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE-VAWVTKSGESDL-EVPIAIRPTSETVMYPYY 144 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~e-my~~~~~g~~~l-~~~l~LRPt~e~~~~~~~ 144 (511)
+..-.+.+.+.+++.+...||+|+.|..|...+.+ +.-+ . ..+ .+.+.. ++ .+.-+||++.-+++....
T Consensus 491 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~--~--~~~~~v~L~N----Pis~e~svLRtsLlpgLL~~l 561 (795)
T 2rhq_B 491 ELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFA--L--QERPTISLLM----PMSEAHATLRQSLLPHLIEAT 561 (795)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTC--S--SCCCCEECSS----CSCTTSSEECSCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhC--C--CCCceEEEcC----CCchhhhhhhhccHHHHHHHH
Confidence 44456788899999999999999999988887654 2111 1 122 223321 11 245589999988888877
Q ss_pred hhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhH------HHHHHHHHHHHHHHhhhhccc
Q 010430 145 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEAD------DEVLQILELYRRIYEEFLAVP 218 (511)
Q Consensus 145 ~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~------~e~~~~l~~~~~i~~~lg~ip 218 (511)
+.+. +++..|+|+|++|.|||.+.. ... . +||+|..+-+.+...+... ..+..+....+.+++.+| ++
T Consensus 562 ~~N~-~r~~~~vrlFEiG~Vf~~d~~-~~~--~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG-~~ 635 (795)
T 2rhq_B 562 AYNV-ARKNKDVRLYEIGRVFFGNGE-GEL--P-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLN-LE 635 (795)
T ss_dssp HHHH-HTTCCCEEEEEEEEEEECCCT-TSC--C-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHT-CC
T ss_pred HHHh-cCCCCCeEEEEEeeEEecCCc-ccC--c-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcC-Cc
Confidence 7654 334689999999999996421 101 2 6777766655443211110 112233444578888777 44
No 72
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=91.54 E-value=0.19 Score=47.17 Aligned_cols=91 Identities=7% Similarity=0.026 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEec-cCCCCCCCceeecCCCccccchhhhhhhh
Q 010430 71 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYYSKWIR 149 (511)
Q Consensus 71 ~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~-~g~~~l~~~l~LRPt~e~~~~~~~~~~~~ 149 (511)
.+++.+.+++.+...||+||.|-.|.+.+.+.+ -+..+ ..+...+.. .. .+.-+||++.-+++....+.++.
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~--~~~~v~l~NPls----~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYP--SKNLVMLLNPLS----ADLNCMRQTLLFGGLESIAHNAN 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSC--GGGCEEBSSGGG----CSCCEECSCSHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccC--cCCeEEEeCCcc----hhHHHHHHHhHHHHHHHHHHHhc
Confidence 356788899999999999999999999886632 11000 012222221 11 24558999998888777666543
Q ss_pred cCCCCccccccccceEeeee
Q 010430 150 GHRDLPLKLNQWCNVVRWEF 169 (511)
Q Consensus 150 s~r~LPlkl~q~g~vfR~E~ 169 (511)
.+.-++|+|++|+||+.+.
T Consensus 79 -r~~~~v~lFEiG~Vf~~~~ 97 (213)
T 3ig2_A 79 -RKNADLKFFEFGNCYHFDA 97 (213)
T ss_dssp -----CCEEEEEEEEEEECC
T ss_pred -CCCCCeeEEEeeeEEecCc
Confidence 2334599999999999763
No 73
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=90.98 E-value=0.24 Score=46.41 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCC-CCceeecCCCccccchhhhhhhh
Q 010430 71 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYYSKWIR 149 (511)
Q Consensus 71 ~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l-~~~l~LRPt~e~~~~~~~~~~~~ 149 (511)
.+++.+.+++.+...||+||.|-.|.+.+.+.+ -+..+ ..+...+.. ++ .+.-+||++.-+++....+.+..
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~--~~~~v~l~N----Pls~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHP--REMAVELMN----PLSQELNCMRQTLLFGGLETLSHNLR 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSC--GGGCCBCSS----BSCSSEEEECSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccC--cCCeEEecC----CccHHHHHHHHHhHHHHHHHHHHHHc
Confidence 457888999999999999999999998876632 11000 011112211 11 24568999998888777666643
Q ss_pred cCCCCccccccccceEeeee
Q 010430 150 GHRDLPLKLNQWCNVVRWEF 169 (511)
Q Consensus 150 s~r~LPlkl~q~g~vfR~E~ 169 (511)
.+.-++++|++|+||+.+.
T Consensus 79 -r~~~~~~lFEiG~Vf~~~~ 97 (213)
T 3ica_A 79 -RKHLSLYLFEWGKCYRFHA 97 (213)
T ss_dssp -TTCSEEEEEEEEEEEEEEC
T ss_pred -CCCCCeeEEEeeeEEecCC
Confidence 2333599999999999763
No 74
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=90.53 E-value=0.2 Score=56.25 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEec-cCCCCCCCceeecCCCccccchhhh
Q 010430 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~-~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
+..-.+.+.+.+++.+...||+|+.|-.|...+.+ ..-+ . ..+-+.+.. .. .+.-+||++.-+++....+
T Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~---~-~~~~v~L~NPis----~d~svLRtsLlpgLL~~l~ 557 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFR---L-DPPRLLLLNPLA----PEKAALRTHLFPGLVRVLK 557 (785)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTT---C-CCCSCEESSCSS----TTSSEECSCSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH-HhcC---C-CCCeEEEcCCCc----hhhhhhhhhhHHHHHHHHH
Confidence 44456788899999999999999998888887655 2111 1 122223321 11 2445899999888888777
Q ss_pred hhhhcCC-CCccccccccceEe
Q 010430 146 KWIRGHR-DLPLKLNQWCNVVR 166 (511)
Q Consensus 146 ~~~~s~r-~LPlkl~q~g~vfR 166 (511)
.+.. .+ ..|+++|++|+|||
T Consensus 558 ~N~~-r~~~~~vrlFEiG~Vf~ 578 (785)
T 1b7y_B 558 ENLD-LDRPERALLFEVGRVFR 578 (785)
T ss_dssp HHHH-HSCCSCEEEEEEEEEES
T ss_pred HHhh-cCCCCCeEEEEEeeeec
Confidence 6643 33 57999999999998
No 75
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=89.83 E-value=0.56 Score=48.55 Aligned_cols=100 Identities=10% Similarity=-0.007 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhc--------ceeeeee-ecccChh-hhhh---hhhcccCCCcceeeEeccCCCCCCCceeecCC
Q 010430 69 SIWETMQKFFDAEIKKM--------KIQNCYF-PLFVSPT-VLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 135 (511)
Q Consensus 69 ~i~~~I~~~~~~~~~~~--------G~~ev~t-P~l~~~~-l~~~---~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt 135 (511)
.-...+.+.+++.|... ||+++.+ |.+++.. .|.. ...|-..=..+-|++ ++...||..
T Consensus 48 hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi--------~~~~vLRTh 119 (415)
T 3cmq_A 48 HPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL--------NRTHMLRAH 119 (415)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS--------SSSEEECSS
T ss_pred CHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEe--------cCCeEEcCC
Confidence 34456666677777665 8999998 6665432 2311 111210000122333 245789887
Q ss_pred CccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccC
Q 010430 136 SETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEG 186 (511)
Q Consensus 136 ~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~ 186 (511)
..+....+++.. .| |++.+|.|||.+.... . .+-+|+|.+.
T Consensus 120 ts~~~~~~l~~~------~~-k~~~~G~VyR~D~~da-~--h~n~fhQ~eg 160 (415)
T 3cmq_A 120 TSAHQWDLLHAG------LD-AFLVVGDVYRRDQIDS-Q--HYPIFHQLEA 160 (415)
T ss_dssp GGGGHHHHHHTT------CS-EEEEEEEEECCCCCBT-T--BCSEEEEEEE
T ss_pred CcHHHHHHHHHC------CC-CEEEeeeEEeccchhh-h--hhHHhcCCCc
Confidence 766666665442 46 9999999999884211 1 4445665553
No 76
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=55.79 E-value=4.7 Score=32.66 Aligned_cols=27 Identities=30% Similarity=0.764 Sum_probs=20.2
Q ss_pred ceeccChhHHHHHhcC--CceEE----ecCCCc
Q 010430 432 IQIVKTWDEFVEALGQ--RKMIL----APWCDE 458 (511)
Q Consensus 432 ~~~~~~~~e~~~~~~~--~~~~~----~~wc~~ 458 (511)
|..++|.++|.+.|.+ +++|+ +|||+.
T Consensus 2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~ 34 (105)
T 3zzx_A 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGP 34 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHH
T ss_pred eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCC
Confidence 5678899999998853 45544 799985
No 77
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=54.56 E-value=11 Score=42.08 Aligned_cols=86 Identities=13% Similarity=-0.036 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCC-CCceeecCCCccccchhhhhhhhcC
Q 010430 73 TMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYYSKWIRGH 151 (511)
Q Consensus 73 ~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l-~~~l~LRPt~e~~~~~~~~~~~~s~ 151 (511)
...+.+++.+...||+|+.|-.|.+.+.+.+ -+. .++...+.. ++ .+.=+||++.=+++....+.+.. +
T Consensus 493 ~~~~~~r~~l~~~G~~Evitysf~~~~~~~~-~~~----~~~~v~l~N----Pis~e~svmRtsLlpgLL~~~~~N~~-r 562 (795)
T 3pco_B 493 LSLKRVKTLLNDKGYQEVITYSFVDPKVQQM-IHP----GVEALLLPS----PISVEMSAMRLSLWTGLLATVVYNQN-R 562 (795)
T ss_dssp CCHHHHHHHHHHTTCEECCCCSEECHHHHHH-HSS----SCCCCBCSS----CSCSTTCEECSSSHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHCCCeeeeccCcCCHHHHHh-hCC----CCCeEEEcC----CCchhHHHHHHHHHHHHHHHHHHHHh-C
Confidence 3556788888999999999999998876632 221 111111211 11 24457999998888777666643 3
Q ss_pred CCCccccccccceEeee
Q 010430 152 RDLPLKLNQWCNVVRWE 168 (511)
Q Consensus 152 r~LPlkl~q~g~vfR~E 168 (511)
+..++++|++|.||+.+
T Consensus 563 ~~~~v~lFEiG~Vf~~~ 579 (795)
T 3pco_B 563 QQNRVRIFESGLRFVPD 579 (795)
T ss_dssp SCCCCEEEEEEEEEEEC
T ss_pred CCCCccEEEeeeEEecC
Confidence 45679999999999875
No 78
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=31.85 E-value=26 Score=27.62 Aligned_cols=27 Identities=11% Similarity=0.341 Sum_probs=18.0
Q ss_pred ceeccChhHHHHHhcC---Cce----EEecCCCc
Q 010430 432 IQIVKTWDEFVEALGQ---RKM----ILAPWCDE 458 (511)
Q Consensus 432 ~~~~~~~~e~~~~~~~---~~~----~~~~wc~~ 458 (511)
+..+++.++|.+.+.+ ++. .-+|||+.
T Consensus 2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~ 35 (112)
T 3d6i_A 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEP 35 (112)
T ss_dssp EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--C
T ss_pred ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHH
Confidence 5677888899998874 443 34789986
No 79
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=30.51 E-value=31 Score=27.90 Aligned_cols=28 Identities=29% Similarity=0.812 Sum_probs=21.5
Q ss_pred cceeccChhHHHHHhcCCce----EEecCCCc
Q 010430 431 CIQIVKTWDEFVEALGQRKM----ILAPWCDE 458 (511)
Q Consensus 431 ~~~~~~~~~e~~~~~~~~~~----~~~~wc~~ 458 (511)
.+..++|.++|.+++++++. .-+|||+.
T Consensus 16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~ 47 (121)
T 2j23_A 16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGP 47 (121)
T ss_dssp CEEECCSHHHHHHHHSSSSCEEEEEECTTCST
T ss_pred ceEEcCCHHHHHHHHcCCCEEEEEEECCCCHh
Confidence 45678899999999976653 34789986
No 80
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=27.48 E-value=29 Score=27.07 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=19.7
Q ss_pred cceeccChhHHHHHh--cCCce----EEecCCCc
Q 010430 431 CIQIVKTWDEFVEAL--GQRKM----ILAPWCDE 458 (511)
Q Consensus 431 ~~~~~~~~~e~~~~~--~~~~~----~~~~wc~~ 458 (511)
++..++|.++|.+.+ .+++. .-+|||+.
T Consensus 2 ~v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~ 35 (107)
T 1gh2_A 2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGP 35 (107)
T ss_dssp CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHH
T ss_pred ceEEecCHHHHHHHHHhCCCCEEEEEEECCCChh
Confidence 456778888999888 34553 34689975
No 81
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=26.40 E-value=2.7e+02 Score=23.65 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=36.0
Q ss_pred CceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHH
Q 010430 346 GICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLD 414 (511)
Q Consensus 346 Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~ 414 (511)
.+.+..|.. ..+.+.+......++|..++|.+ +|.+.-+.. +. ++.+++.+.|..+|+
T Consensus 124 ~~~~~~d~~--~~~~~~~~~~~v~~~P~~~lid~----~G~i~~~~~--g~---~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 124 DYPSIYDPP--FMTAASLGGVPASVIPTTIVLDK----QHRPAAVFL--RE---VTSKDVLDVALPLVD 181 (183)
T ss_dssp CSCEEECTT--CGGGGGTTTCCTTCCSEEEEECT----TSCEEEEEC--SC---CCHHHHHHHHHHHHH
T ss_pred CccEEECCc--chHHHHhccCCCCCCCeEEEECC----CCcEEEEEc--CC---CCHHHHHHHHHHHHh
Confidence 356666654 36666666556788998899974 466554433 32 356667766666654
No 82
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=25.32 E-value=38 Score=32.47 Aligned_cols=45 Identities=7% Similarity=-0.134 Sum_probs=30.4
Q ss_pred cCCCcccc--ccccccc---ccccccceeeEEeCCCCceeeeeeecccccccee
Q 010430 244 PNTGRGIQ--GATSHCL---GQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTI 292 (511)
Q Consensus 244 p~~gr~lq--~gt~~~l---g~~~s~~f~i~y~~~~g~~~~v~~~~~Gi~eRli 292 (511)
|++.|+++ +|++|+. |...+..-|.+|++. ..++.+.++| +||+-
T Consensus 225 ~~lvRgldYYtG~vFe~~~~~~~~~i~~GGRYD~l---~~pavGfsig-~er~~ 274 (275)
T 1usy_A 225 LTLARTIEEYCGLIFTIYDTSSSRLVAAGGEYTVN---GEKGVGGSIF-LEGKT 274 (275)
T ss_dssp CCCGGGGGTCSSEEEEEEETTTTEEEEEEEEEEET---TEEEEEEEEE-EEEEE
T ss_pred ccccCCCCccCCeEEEEEECCCCCeEeeecCCCCC---CCCEEEEEEE-eeccc
Confidence 67788887 6888764 233466788999774 3466666666 68863
No 83
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.79 E-value=88 Score=27.75 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhcceeccChhHHHHHhcCCceEEecCCCch
Q 010430 413 LDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEE 459 (511)
Q Consensus 413 l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~wc~~~ 459 (511)
.+..|.++|+++.+.+++..+. ......+++-||-.
T Consensus 112 ~E~~H~~~~~~~l~~l~~~~~~-----------~~~~~~~C~~CG~i 147 (170)
T 3pwf_A 112 AEKIHAELYRKAKEKAEKGEDI-----------EIKKVYICPICGYT 147 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCC-----------CCSCEEECTTTCCE
T ss_pred HHHHHHHHHHHHHHHHhcCCcC-----------CCCCeeEeCCCCCe
Confidence 3456888888888877766432 11345558888754
No 84
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=24.09 E-value=1.3e+02 Score=24.38 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=30.1
Q ss_pred eeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCC
Q 010430 314 VQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRD 355 (511)
Q Consensus 314 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~ 355 (511)
.++.|+|++. + +.+-++..++.+.|++.|++..+..-.
T Consensus 5 ve~sv~Plg~-~---~svs~~Va~~i~vl~~sGl~y~~~pmg 42 (104)
T 2ibo_A 5 IALQVLPLVQ-G---IDRIAVIDQVIAYLQTQEVTMVVTPFE 42 (104)
T ss_dssp EEEEEEECSC-S---HHHHHHHHHHHHHHHHSSSEEEECSSC
T ss_pred EEEEEEcCCC-C---CcHHHHHHHHHHHHHHcCCCeEecCCc
Confidence 4577899983 2 567889999999999999999887643
No 85
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=23.82 E-value=1.8e+02 Score=19.81 Aligned_cols=51 Identities=14% Similarity=0.003 Sum_probs=31.6
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcceeccChhHHHHHhc
Q 010430 396 AKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALG 446 (511)
Q Consensus 396 ek~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~ 446 (511)
....|+.+|+...+..+-......-.+...+..+..-.-.=+++||...+.
T Consensus 13 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 13 GDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 345788888887777664444444445555555444333447888887764
No 86
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=23.79 E-value=37 Score=26.76 Aligned_cols=26 Identities=38% Similarity=0.712 Sum_probs=19.3
Q ss_pred eeccChhHHHHHhcCCceEE----ecCCCc
Q 010430 433 QIVKTWDEFVEALGQRKMIL----APWCDE 458 (511)
Q Consensus 433 ~~~~~~~e~~~~~~~~~~~~----~~wc~~ 458 (511)
..-.|.++|.+++.+++.++ +|||+.
T Consensus 9 ~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~ 38 (109)
T 3f3q_A 9 TQFKTASEFDSAIAQDKLVVVDFYATWCGP 38 (109)
T ss_dssp EECCSHHHHHHHTTSSSCEEEEEECTTCHH
T ss_pred cCCCCHHHHHHHHhcCCEEEEEEECCcCHh
Confidence 34568899999998776544 689964
No 87
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=23.62 E-value=27 Score=28.73 Aligned_cols=28 Identities=18% Similarity=0.459 Sum_probs=20.7
Q ss_pred cceeccChhHHHHHhcCCce----EEecCCCc
Q 010430 431 CIQIVKTWDEFVEALGQRKM----ILAPWCDE 458 (511)
Q Consensus 431 ~~~~~~~~~e~~~~~~~~~~----~~~~wc~~ 458 (511)
.+..+++.++|.+++.+++. .-+|||+.
T Consensus 20 mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~ 51 (125)
T 1r26_A 20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGP 51 (125)
T ss_dssp CCEEECCHHHHHHHHHSSSCEEEEEECTTCHH
T ss_pred ceEECCCHHHHHHHHccCCEEEEEEECCcCHh
Confidence 46677888999999976653 34789974
No 88
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=23.22 E-value=90 Score=27.91 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=26.3
Q ss_pred ceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCc
Q 010430 313 SVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSH 365 (511)
Q Consensus 313 P~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ 365 (511)
.++|.|-.-+. +.-...+..|+..|...||++.+|+++ ...|..+..
T Consensus 8 ~yDVFiSfrg~-----D~r~~Fv~~L~~~L~~~gi~~f~D~~~-l~~G~~i~~ 54 (176)
T 3jrn_A 8 KYDVFLSFRGH-----DTRHNFISFLYKELVRRSIRTFKDDKE-LENGQRFSP 54 (176)
T ss_dssp CEEEEEEECHH-----HHTTTHHHHHHHHHHHTTCCEECCCC-----------
T ss_pred CCeEEEECcCc-----ccChHHHHHHHHHHHHCCCEEEEEccc-ccCCCchHH
Confidence 36776655431 111246778999999999999999876 467766654
No 89
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=22.88 E-value=30 Score=29.42 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=22.1
Q ss_pred HHHHHhcceeccChhHHHHHhcC--Cce----EEecCCCc
Q 010430 425 KQRRDACIQIVKTWDEFVEALGQ--RKM----ILAPWCDE 458 (511)
Q Consensus 425 ~~~~~~~~~~~~~~~e~~~~~~~--~~~----~~~~wc~~ 458 (511)
.......+..+++.++|...+++ ++. .-+|||+.
T Consensus 7 ~~~~~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~ 46 (153)
T 2wz9_A 7 AEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQ 46 (153)
T ss_dssp -----CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHH
T ss_pred cccccCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHh
Confidence 33445678888899999988875 553 34689964
No 90
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=22.13 E-value=36 Score=27.23 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=20.6
Q ss_pred cceeccChhHHHHHhcCCce----EEecCCCc
Q 010430 431 CIQIVKTWDEFVEALGQRKM----ILAPWCDE 458 (511)
Q Consensus 431 ~~~~~~~~~e~~~~~~~~~~----~~~~wc~~ 458 (511)
.+..+++.++|.+++++++. .-+|||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~ 44 (114)
T 2oe3_A 13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGP 44 (114)
T ss_dssp GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHH
T ss_pred heeecCCHHHHHHHHhCCCEEEEEEECCCCHH
Confidence 45667888899998887763 34789964
No 91
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=22.10 E-value=51 Score=25.19 Aligned_cols=27 Identities=30% Similarity=0.668 Sum_probs=19.0
Q ss_pred ceeccChhHHHHHhc--CCceE----EecCCCc
Q 010430 432 IQIVKTWDEFVEALG--QRKMI----LAPWCDE 458 (511)
Q Consensus 432 ~~~~~~~~e~~~~~~--~~~~~----~~~wc~~ 458 (511)
+..++|.+++.+.+. +++.+ -+|||+.
T Consensus 2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~ 34 (105)
T 3m9j_A 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGP 34 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHH
T ss_pred eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChh
Confidence 456788888988887 45543 3589954
No 92
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=21.62 E-value=13 Score=29.15 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=13.4
Q ss_pred eeccChhHHHHHhcCCceE----EecCCCc
Q 010430 433 QIVKTWDEFVEALGQRKMI----LAPWCDE 458 (511)
Q Consensus 433 ~~~~~~~e~~~~~~~~~~~----~~~wc~~ 458 (511)
..++|.++|.+++++++.+ -+|||+.
T Consensus 3 ~~i~~~~~~~~~~~~~~~vlv~f~a~wC~~ 32 (105)
T 4euy_A 3 NTFKTIEELATYIEEQQLVLLFIKTENCGV 32 (105)
T ss_dssp -------CCSSSTTCSSEEEEEEEESSCHH
T ss_pred cccCCHHHHHHHHhcCCCEEEEEeCCCCcc
Confidence 3566777777777666643 4799975
No 93
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=21.24 E-value=43 Score=27.72 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=24.3
Q ss_pred HHhcceeccChhHHHHHhcCCceEE----ecCCCchh
Q 010430 428 RDACIQIVKTWDEFVEALGQRKMIL----APWCDEEE 460 (511)
Q Consensus 428 ~~~~~~~~~~~~e~~~~~~~~~~~~----~~wc~~~~ 460 (511)
+..+...++|.++|.+.+++.+.++ +.|||...
T Consensus 4 ~~~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~ 40 (112)
T 3iv4_A 4 FQGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISA 40 (112)
T ss_dssp GGGCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHH
T ss_pred hhcceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHH
Confidence 4567888999999999997655433 45998643
No 94
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=20.35 E-value=42 Score=31.72 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=45.7
Q ss_pred cccceeEEEEeeccCc---c---chhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeee
Q 010430 310 RVASVQVIVVPVPYKD---A---DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEI 377 (511)
Q Consensus 310 ~laP~qV~Iipi~~~~---~---~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iiv 377 (511)
.+.|.||.+||=.... + |-....+....+.+.|+++||||.+....+ -.++..|...|+|+ |++
T Consensus 85 ~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd---~~qi~aA~~~GA~~-IEL 154 (243)
T 1m5w_A 85 ETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD---EEQIKAAAEVGAPF-IEI 154 (243)
T ss_dssp HHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC---HHHHHHHHHTTCSE-EEE
T ss_pred HcCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEE
Confidence 3568999999964211 0 222346778889999999999999875431 26899999999995 444
Done!