BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010431
         (511 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
 pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
          Length = 484

 Score = 33.1 bits (74), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 211 DWRLSFQNTEVRDQTLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFLHFM 261
           D  LS     + D+T SR+   I+  +A +G  K  ++ HSMG  + + ++
Sbjct: 96  DKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYV 146


>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
          Length = 479

 Score = 33.1 bits (74), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 211 DWRLSFQNTEVRDQTLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFLHFM 261
           D  LS     + D+T SR+   I+  +A +G  K  ++ HSMG  + + ++
Sbjct: 96  DKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYV 146


>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
 pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
          Length = 475

 Score = 33.1 bits (74), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 211 DWRLSFQNTEVRDQTLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFLHFM 261
           D  LS     + D+T SR+   I+  +A +G  K  ++ HSMG  + + ++
Sbjct: 96  DKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYV 146


>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
           Fragment
 pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
           Fragment
          Length = 475

 Score = 32.0 bits (71), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 211 DWRLSFQNTEVRDQTLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFLHFM 261
           D  LS     + D+T SR+   I+  +A +G  K  ++ H+MG  + + ++
Sbjct: 96  DKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHAMGTFFLVRYV 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,293,057
Number of Sequences: 62578
Number of extensions: 690560
Number of successful extensions: 1280
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1276
Number of HSP's gapped (non-prelim): 6
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)