Query 010433
Match_columns 511
No_of_seqs 464 out of 2469
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 06:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 9.2E-49 3.1E-53 389.6 40.5 446 23-494 7-483 (491)
2 3o7q_A L-fucose-proton symport 100.0 6.9E-37 2.4E-41 299.6 30.3 371 28-470 26-428 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 8E-38 2.7E-42 307.4 21.9 399 22-474 22-433 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.8E-31 1.3E-35 262.7 30.4 392 77-478 48-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 6.7E-34 2.3E-38 272.3 8.9 360 32-464 4-366 (375)
6 2xut_A Proton/peptide symporte 100.0 4.3E-27 1.5E-31 235.4 23.1 141 80-222 51-196 (524)
7 2cfq_A Lactose permease; trans 99.9 6.9E-28 2.3E-32 233.4 7.8 354 79-478 39-404 (417)
8 3o7q_A L-fucose-proton symport 99.4 2.9E-12 1E-16 124.6 13.8 148 293-451 33-181 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.3 6.5E-12 2.2E-16 122.6 13.2 144 79-224 284-433 (451)
10 4aps_A DI-OR tripeptide H+ sym 99.3 9.1E-12 3.1E-16 123.1 12.1 164 294-471 21-193 (491)
11 2cfq_A Lactose permease; trans 99.3 4.9E-12 1.7E-16 122.0 8.6 146 81-228 257-404 (417)
12 2xut_A Proton/peptide symporte 99.3 6.7E-11 2.3E-15 117.9 15.4 166 295-473 21-197 (524)
13 2gfp_A EMRD, multidrug resista 99.2 1.7E-11 5.8E-16 116.6 9.9 171 294-478 8-179 (375)
14 4gc0_A D-xylose-proton symport 99.2 3.3E-10 1.1E-14 111.9 14.7 150 79-228 308-467 (491)
15 2g9p_A Antimicrobial peptide l 53.1 5.3 0.00018 19.1 0.9 14 102-115 2-15 (26)
16 4dve_A Biotin transporter BIOY 20.2 2.3E+02 0.0079 23.1 6.1 22 90-111 100-121 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=9.2e-49 Score=389.64 Aligned_cols=446 Identities=27% Similarity=0.491 Sum_probs=352.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHh
Q 010433 23 TSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFG 102 (511)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 102 (511)
+++.+.++++++++.+++|||.++++.+ +|.+.++|..+. +...+.++.+.|++.+++.+|..+|+++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~~~ 74 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGAL 74 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999999999877 788888773221 1111446778899999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhc
Q 010433 103 ASYVTRSRGRRASIMVGSVSFFIGAILNA------------------CAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 164 (511)
Q Consensus 103 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 164 (511)
+|+++||+|||++++++.+++.+++++++ +++|++.++++|+++|++.|...+....+++|+
T Consensus 75 ~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~ 154 (491)
T 4gc0_A 75 GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAEL 154 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 478999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccC------CccchHHHHHHHHHHHHHHHHhccccCChhHHHhcCCHH
Q 010433 165 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH------PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (511)
Q Consensus 165 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~ 238 (511)
.|+++|++..++.+.+..+|.++++.++....... ..+||+.+.+..++.++..+..+++||||+|+..+++.+
T Consensus 155 ~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 155 APAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQE 234 (491)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHH
T ss_pred CCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchh
Confidence 99999999999999999999999998876554322 257999999999998888888889999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHHcCC
Q 010433 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGF 318 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (511)
++++.+++...++..+++..+..+...+.++ .......+ ..++...... ...+.+..+.+.+.+|.|.+.+..+.
T Consensus 235 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQAVQEIKHSLDHGRK-TGGRLLMF---GVGVIVIGVM-LSIFQQFVGINVVLYYAPEVFKTLGA 309 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHS---CCTHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHhHHHhcCCchhHHHHHHHHHHHHhhhh-hhhHHHHh---cccHHHHHHH-HHHHHHHhhhhHHHhcchHHHHhcCC
Confidence 9999988876554443333333222222222 11112222 2223333333 56667777888888999999999888
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH
Q 010433 319 GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFV 398 (511)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (511)
+...........++..+++.++++++.||+|||+.+..+...+.++++.+...... ....+..+....++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYV 380 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHH
Confidence 88888888888899999999999999999999999998888877777666554322 122344455555666
Q ss_pred HHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------c-hhhHHHHHHHHHHHHHHHH
Q 010433 399 LAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL------K-FGIFLVFGGLVVIMSAFIY 471 (511)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~ 471 (511)
.+++.++.++.+.+.+|++|++.|++++|+.+..+++++++++.+++.+.+.. + ...++++++++++..++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66777788888889999999999999999999999999999998887664322 2 2345677777778888888
Q ss_pred hccccCCCCCHHHHHHHhccCcc
Q 010433 472 FFLPETKQVPIEEIYLLFENHWF 494 (511)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~ 494 (511)
+++||||++++||+|+..|++.+
T Consensus 461 ~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 461 KFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHCCCCTTCCHHHHGGGTC----
T ss_pred heecCCCCCCHHHHHHHhCCCCc
Confidence 99999999999999887765543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=6.9e-37 Score=299.55 Aligned_cols=371 Identities=13% Similarity=0.136 Sum_probs=276.3
Q ss_pred HHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 010433 28 IACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVT 107 (511)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~ 107 (511)
.....+++..+..+++....++. +|.+.+++ |++..+.|++.+++.+++.++++++|+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~ 85 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDIL--LPQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGILM 85 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444456667778877777666 67777777 89999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHH
Q 010433 108 RSRGRRASIMVGSVSFFIGAILN---ACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (511)
Q Consensus 108 dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 184 (511)
||+|||++++.+.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|
T Consensus 86 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 165 (438)
T 3o7q_A 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCcc------------------------chHHHHHHHHHHHHHHHHhc--cccCChhHHHhcCCHH
Q 010433 185 ILVANLINYGTEKIHPWG------------------------WRLSLGLATVPATLMFVGGL--FLPETPNSLVEQGKLD 238 (511)
Q Consensus 185 ~~~g~~l~~~~~~~~~~~------------------------wr~~f~~~~~~~~~~~~~~~--~~~esp~~l~~~~~~~ 238 (511)
.+++++++.......... ||+.|++.+++.++..+..+ ..||+++. +++++
T Consensus 166 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~ 242 (438)
T 3o7q_A 166 AIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSDA 242 (438)
T ss_dssp HHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCCS
T ss_pred HHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccccc
Confidence 999999976655122212 99999887777666544433 35665531 00000
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHH-HHH-c
Q 010433 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI-FQS-L 316 (511)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 316 (511)
. +++.+.+++++++++..+... +..+...........+.|.+ +++ +
T Consensus 243 --------------~-------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (438)
T 3o7q_A 243 --------------K-------------QGSFSASLSRLARIRHWRWAV-----LAQFCYVGAQTACWSYLIRYAVEEIP 290 (438)
T ss_dssp --------------S-------------TTSHHHHHHHHTTCSHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred --------------c-------------ccchhhhHHHHHhChHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 0 000112344556655544333 23333444456677888888 777 4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHH
Q 010433 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICL 396 (511)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (511)
|+++.+++.......++.+++.++.+++.||++||+.+..+..+..++.+++... ...+ ......+
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~ 356 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHV-GLIALTL 356 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHH-HHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcH-HHHHHHH
Confidence 9999999999999999999999999999999999998888777666655544332 1112 2233344
Q ss_pred HHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Q 010433 397 FVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFI 470 (511)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 470 (511)
.+.+.+..+ +..+.+..|.+|++ ++.+.++.. ...+++.++|.+.+.+.+..+ +...+.+.+++.+...+.
T Consensus 357 ~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 357 CSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 445544444 44566657888876 888888776 677999999999999999888 666655555554444433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=8e-38 Score=307.44 Aligned_cols=399 Identities=12% Similarity=0.038 Sum_probs=284.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 010433 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTF 101 (511)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 101 (511)
.+++.+......+++.+..+++...+++. +|.+.++ + .+..+.|++.+++.++..++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~-~s~~~~g~~~~~~~~~~~~~~~ 80 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALA--MPYLVEQ------------------G-FSRGDLGFALSGISIAYGFSKF 80 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHH--HHHTTSS------------------T-TCSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH------------------h-ccHhHHHHHHHHHHHHHHHHHH
Confidence 44455666667777778888887776554 4444333 3 5788999999999999999999
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHH
Q 010433 102 GASYVTRSRGRRASIMVGSVSFFIGAILNAC----AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLF 177 (511)
Q Consensus 102 ~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 177 (511)
++|+++||+|||+++..+.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.
T Consensus 81 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 160 (451)
T 1pw4_A 81 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW 160 (451)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred hHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcchH
Q 010433 178 QLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDA 255 (511)
Q Consensus 178 ~~~~~~G~~~g~~l~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (511)
+.+.++|.+++|++++.+. +..+ ||+.|++.+++.++..++ .+++||+|++...+++.+.. .+.+.
T Consensus 161 ~~~~~~g~~~g~~~~~~l~--~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 228 (451)
T 1pw4_A 161 NCAHNVGGGIPPLLFLLGM--AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPD 228 (451)
T ss_dssp HHHHHHHHTSHHHHHHHHH--HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC---
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------ccccc
Confidence 9999999999999976544 2346 999999999888776544 56688887542211111000 00000
Q ss_pred HHHHHHHHHHHHHhccCC--hHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHH
Q 010433 256 EFSDLIDASNAARAIKNP--FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI 332 (511)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 332 (511)
+ . +.+++++....+ .++.++++.. .... +..+...........+.|.++++ +|+++.+.+.......+
T Consensus 229 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 229 D---Y-NEKAEQELTAKQIFMQYVLPNKLL----WYIA-IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp --------------CCTHHHHHHTSSCHHH----HHHH-HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred c---c-hhhhhcccccccchHHHHHcCHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 0 000000000111 2233333222 2222 34444555566778889999877 89999999999999999
Q ss_pred HHHHHHHHHHHHHhhc--CChhHHHhhhHHHH-HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccccc
Q 010433 333 ALCIAALISMAFVDKF--GRRAFFLEAGTEMI-IYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLG 409 (511)
Q Consensus 333 ~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (511)
+.+++.++.+++.||+ ++|+.+..+..+.. ++++++... +....+.......+.+.+.+... +..
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~-~~~ 367 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYGPV-MLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------cccCHHHHHHHHHHHHHHHhchH-HHH
Confidence 9999999999999999 99887766554443 222222111 11123334444444444443333 333
Q ss_pred ceeecccCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhcc
Q 010433 410 WLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 474 (511)
Q Consensus 410 ~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
..+..|.+|++.|+++.|+.+....+ +..+++.+.+.+.+..++...+.+.+++.+++.+...+.
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55668999999999999999999999 999999999999998887665555555555544444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=3.8e-31 Score=262.69 Aligned_cols=392 Identities=16% Similarity=0.099 Sum_probs=250.7
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhh
Q 010433 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 155 (511)
Q Consensus 77 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 155 (511)
++|++..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.++++++++++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 348999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCC--CchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc-cC----Ch
Q 010433 156 AVPLYLSEMAPAKI--RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PE----TP 228 (511)
Q Consensus 156 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e----sp 228 (511)
...+++.|++|+++ |++++++++.+.++|.+++|.+++.+.. ..+||+.|++.++..++..+..++. |+ ..
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE--AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 99999999999988 6778888999999999999999766554 3489999999877766654443322 21 11
Q ss_pred hHHHhcCCHHHHHHHHHH----------------HhCCCcchHHHHHHHHH------HHHHHhccC-ChHHhhccCCchh
Q 010433 229 NSLVEQGKLDEARKVLEK----------------VRGTANVDAEFSDLIDA------SNAARAIKN-PFRNLFKKKNRPQ 285 (511)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~ 285 (511)
+....+.+.++.++..+. ..+..+.+......... .......+. ......+++....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSY 285 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTH
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 100111223333332222 11111111110000000 000000000 0001111111111
Q ss_pred HHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-----hhhH
Q 010433 286 LVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL-----EAGT 359 (511)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~ 359 (511)
.... +..+.....+.....+.|.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+..
T Consensus 286 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 286 IPLF---IAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp HHHH---HHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 1111 12222333344455667777765 6777667788888888999999999999999999986544 4444
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHH
Q 010433 360 EMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTAL 439 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 439 (511)
+..++++++....... .. ......+.......+.+.+.+.. .+....++.|.+|++.|+++.|+.+....++..+
T Consensus 363 ~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 363 FAGLSFLLMAIPGALY---GT-SGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHTTTHHHHHHC---CC-CTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CC-CCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444443332110 00 01122333444445555554433 3455667789999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCC
Q 010433 440 IAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETK 478 (511)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (511)
++.+.+.+.+......+..+++++.+..++.+...++.+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 438 NAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988776654445555555555555555555555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=6.7e-34 Score=272.27 Aligned_cols=360 Identities=14% Similarity=0.145 Sum_probs=266.4
Q ss_pred HHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 010433 32 VAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 111 (511)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 111 (511)
.++++.++.+++...+.+. +|.+.+++ |.+..+.+++.+++.++..++++++|+++||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 63 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPA--IADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG 63 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhhh--hHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455566677777776655 57777766 889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 010433 112 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191 (511)
Q Consensus 112 rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l 191 (511)
||+++..+.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+
T Consensus 64 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (375)
T 2gfp_A 64 RRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143 (375)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCccchHHHHHHHHHHHHHHH-HhccccCChhHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhc
Q 010433 192 NYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAI 270 (511)
Q Consensus 192 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (511)
++... +..+||+.|++.++..++..+ ..+++||++++. +++ ++.
T Consensus 144 ~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------------------------~~~ 188 (375)
T 2gfp_A 144 GGLLD--TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD--APR-------------------------------TRL 188 (375)
T ss_dssp HHHSS--CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT--CCC-------------------------------CCT
T ss_pred HHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC--ccc-------------------------------ccH
Confidence 66554 335899999999888877766 456678876421 000 011
Q ss_pred cCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010433 271 KNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFG 349 (511)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 349 (511)
+.++++.++++..+... +..+...........+.|.++++ +|.++.+.+.......++.+++.++.+++.||.+
T Consensus 189 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~ 263 (375)
T 2gfp_A 189 LTSYKTLFGNSGFNCYL-----LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS 263 (375)
T ss_dssp TTCSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555554333322 23333444455666777777765 7888899999999999999999999999999988
Q ss_pred ChhHHHhhhHH-HHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHH
Q 010433 350 RRAFFLEAGTE-MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV 428 (511)
Q Consensus 350 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 428 (511)
++. ..+... ...+...+...... ....+.......+.+.+.+... +....+..|..| +.|+++.|+
T Consensus 264 ~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~~~g~ 330 (375)
T 2gfp_A 264 TLM--WQSVICCLLAGLLMWIPDWFG---------VMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTAGAL 330 (375)
T ss_dssp HHH--HHHHHHHHHTSSSSSHHHHHH---------HHHHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHhhhc---------cccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC-cccchHHHH
Confidence 732 222222 12221111111100 0122333444455555555444 444566678888 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 010433 429 VVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 464 (511)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
.+....++..+++.+.+.+.+..++...+.+.++..
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 999999999999999999887766665555544333
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=4.3e-27 Score=235.42 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=127.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhc-chhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhhhhhh
Q 010433 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQAV 157 (511)
Q Consensus 80 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 157 (511)
++..+.+++.+++.++..++++++|+++||+ |||+++..+.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhHhHhcCCCCCCchhHHH---HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhc
Q 010433 158 PLYLSEMAPAKIRGAVNQL---FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (511)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (511)
.+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+. +..+||+.|++.++..++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL--KNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH--HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 89999999999999865544 335899999998888776655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=6.9e-28 Score=233.43 Aligned_cols=354 Identities=13% Similarity=0.061 Sum_probs=215.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHH---HHHHhhHH-HHHHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAI---LNACAVHI-SMLLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~---~~~~~~~~-~~l~~~r~l~G~~~~~~~ 154 (511)
|++..+.|++.+++.+++.++++++|+++||+|||++++.+..+++++.. ...+++.. ..++..+.+.|++.+...
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999998887765322 12233322 124456677666666555
Q ss_pred hhhhhHhHhcCCC--CCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccccCChhHHH
Q 010433 155 QAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 232 (511)
Q Consensus 155 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~l~ 232 (511)
+.....+.++.++ ++|+...+....+..+|..++|.+++.+.. .+||+.|++.++..++..+..++.+|+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 5555555555433 456777788878888899999988766553 379999998877765555555554443311
Q ss_pred hcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHH
Q 010433 233 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312 (511)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (511)
+.+.++.+ ..... +....+.++.++++..+...+ ..+.....+..+..+.|.+
T Consensus 194 -~~~~~~~~-------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 194 -SATVANAV-------GANHS--------------AFSLKLALELFRQPKLWFLSL-----YVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp -SSCSSSSS-------SSCCC--------------CCCHHHHHHHTTCHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred -cccccccc-------ccccc--------------cccHHHHHHHhcCCchhhHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000 000011233444433332221 1121122233344456766
Q ss_pred HHH-cC---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhH
Q 010433 313 FQS-LG---FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI 388 (511)
Q Consensus 313 ~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
+.+ ++ .+....+.......++.+++.++.+++.||++||+.+..+..+..+..+.+... ...+
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~ 313 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------------TSAL 313 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------------CSHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------------ccHH
Confidence 654 33 224455677777788888999999999999999998876665555443332211 1122
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 010433 389 FLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV-VCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMS 467 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (511)
..+....+...+..... +..+.+++|.+|++.|+++.++. +....+++.++|.+.|.+.+..++...+...+++.+++
T Consensus 314 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 22222222333222111 22355678999999999999985 77888999999999999988777655554444444444
Q ss_pred H-HHHhccccCC
Q 010433 468 A-FIYFFLPETK 478 (511)
Q Consensus 468 ~-~~~~~~~~~~ 478 (511)
. +.+...+|++
T Consensus 393 ~~~~~~~~~~~~ 404 (417)
T 2cfq_A 393 TLISVFTLSGPG 404 (417)
T ss_dssp HHHHTTSSCCSC
T ss_pred HHHHHhhhcCCC
Confidence 3 3344444433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.38 E-value=2.9e-12 Score=124.61 Aligned_cols=148 Identities=8% Similarity=-0.096 Sum_probs=115.8
Q ss_pred HHHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHH
Q 010433 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
...+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++.....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444455667778888889999999999999999999999999999999999999999999888888777763321
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 010433 373 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL-CHL 451 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 451 (511)
. ....+..++..++.+.+.+... +....++.|.+|+++|+.++++.+....+|..+++.+.+.+. +..
T Consensus 113 ~----------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 113 E----------IMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp H----------TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred c----------cccHHHHHHHHHHHHhhHHHhh-hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 1223445555566666655444 344666789999999999999999999999999999999888 443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.34 E-value=6.5e-12 Score=122.64 Aligned_cols=144 Identities=18% Similarity=0.150 Sum_probs=123.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhc--chhHHHHHHHHHHH-HHHHHHHHh--hHHHHHHHHHHHHHhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASIMVGSVSFF-IGAILNACA--VHISMLLLGRIFLGMGIGFG 153 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~~~~~l~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~ 153 (511)
|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+..
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 363 (451)
T 1pw4_A 284 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP 363 (451)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence 88999999999999999999999999999999 99999888877766 666666665 36788888899999999999
Q ss_pred hhhhhhHhHhcCCCCCCchhHHHHHHHHHH-HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHhccc
Q 010433 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (511)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (511)
.+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.. ..||+..|++.++..++..+..+++
T Consensus 364 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 364 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD--FFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999665544 3479999999888877766554443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.31 E-value=9.1e-12 Score=123.09 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=121.0
Q ss_pred HHHhhhcchhhHHhcHHHHHHH------cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHhhhHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQS------LGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMV 366 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~ 366 (511)
..+.....++....+.+.++++ +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+..+..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 3444444556666667776644 89999999999999999999999999999999 8999999988877777666
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccc--hhhHHHHHHHHHHHHHHHHHHHH
Q 010433 367 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM--RSAGQSVVVCNNLLFTALIAQAF 444 (511)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~ 444 (511)
+.... ...+..++...+.+.+.+... +....++.|.+|++. |+.+.++.+....+|..++|.+.
T Consensus 101 ~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 101 VLALP-------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHSC-------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 55432 122344445555555555443 444666789999988 77788888899999999999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHH
Q 010433 445 LAALCHLKFGIFLVFGGLVVIMSAFIY 471 (511)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (511)
+.+.+..++...+...++..+.+.+..
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887766655555444444433
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.28 E-value=4.9e-12 Score=122.03 Aligned_cols=146 Identities=10% Similarity=0.077 Sum_probs=121.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhH
Q 010433 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (511)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 160 (511)
+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888999999999999999999999999988888887777777888888888888898887777788899
Q ss_pred hHhcCCCCCCchhHHH-HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCCh
Q 010433 161 LSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETP 228 (511)
Q Consensus 161 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp 228 (511)
+.|.+|++.|+++.+. ++....+|.+++|.+++.+.. ..|++..|.+.+++.++..+. ..+.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~--~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH--HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 488888999999999765543 347888998888887776555 44466654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.26 E-value=6.7e-11 Score=117.86 Aligned_cols=166 Identities=12% Similarity=0.042 Sum_probs=119.8
Q ss_pred HHhhhcchhhHHhcHHHHHH-HcC------CCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHhhhHHHHHHHH
Q 010433 295 AFQQLTGMNSILFYAPVIFQ-SLG------FGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMV 366 (511)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~ 366 (511)
.+.....++....+++.++. ++| +++.+.++..+...++..++.++.|+++||+ |||+.+..+..+..++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33344445556667777664 588 9999999999999999999999999999999 999998888777777666
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHH---HHHHHHHHHHHHHHH
Q 010433 367 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV---VVCNNLLFTALIAQA 443 (511)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~~~~~~~~~ 443 (511)
+..... ...+..++...+.+.+.+... +....++.|.+|++.|+.+.+. .+....+|..++|.+
T Consensus 101 ~~~~~~------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 101 FLAIFE------------HSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHTS------------SCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhc------------ccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555431 123444455555555555443 4446667899999999766666 888899999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHhc
Q 010433 444 FLAALCHLKFGIFLVFGGLVVIMSAFIYFF 473 (511)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (511)
.+.+.+..++...+.+.++..+...+....
T Consensus 168 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp STHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999888777776655555554444444433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.24 E-value=1.7e-11 Score=116.58 Aligned_cols=171 Identities=13% Similarity=0.104 Sum_probs=126.1
Q ss_pred HHHhhhcchhhHHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHH
Q 010433 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 373 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (511)
..+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 86 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-
Confidence 3344444455566677877888999999999999999999999999999999999999999988888887777766542
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010433 374 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 453 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (511)
..+..+....+.+.+.+.. .+....++.|.+|+++|++++++.+....++..++|.+.+.+.+..++
T Consensus 87 ------------~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 87 ------------SLTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 2234444445555554433 344456668999999999999999999999999999999988877776
Q ss_pred hhHHHHHHHHHHHHHH-HHhccccCC
Q 010433 454 GIFLVFGGLVVIMSAF-IYFFLPETK 478 (511)
Q Consensus 454 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 478 (511)
...+.+.++..+...+ ..+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 6655554444444333 444455543
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.16 E-value=3.3e-10 Score=111.87 Aligned_cols=150 Identities=19% Similarity=0.112 Sum_probs=106.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-----HISMLLLGRIFLGMGIGFG 153 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~ 153 (511)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +...++..-+..+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 44566666777777888899999999999999999999998888888776665432 2222222222222222234
Q ss_pred hhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcc----cCCccchHHHHHHHHHHHHHHHH-hccccCCh
Q 010433 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----IHPWGWRLSLGLATVPATLMFVG-GLFLPETP 228 (511)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~----~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp 228 (511)
.+....+.+|.+|.+.|++++++......+|..+++.+...+.. ....++...|++.++++++..+. ++++|||.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 56777899999999999999999999999988888766332221 11134567788888887777554 67799985
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.09 E-value=5.3 Score=19.07 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=11.2
Q ss_pred hhhhhhhhcchhHH
Q 010433 102 GASYVTRSRGRRAS 115 (511)
Q Consensus 102 ~~g~l~dr~Grr~~ 115 (511)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36788899999865
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.18 E-value=2.3e+02 Score=23.06 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhcc
Q 010433 90 SSLYFAGLVSTFGASYVTRSRG 111 (511)
Q Consensus 90 s~~~l~~~i~~~~~g~l~dr~G 111 (511)
.-|.+|+.++..+.|++.||..
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~ 121 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLK 121 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHcc
Confidence 3455666666677777777654
Done!