Query 010433
Match_columns 511
No_of_seqs 464 out of 2469
Neff 11.2
Searched_HMMs 13730
Date Mon Mar 25 06:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010433.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010433hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 5.7E-38 4.2E-42 305.7 26.5 402 19-468 16-424 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 7.5E-28 5.4E-32 230.7 16.4 356 79-484 39-410 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 4.2E-13 3E-17 128.6 11.5 162 305-477 44-207 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 99.4 3.1E-13 2.2E-17 127.7 9.4 146 79-226 255-402 (417)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 21.2 2.2E+02 0.016 23.9 12.8 50 143-192 282-331 (383)
6 d2iuba2 f.17.3.1 (A:286-349) M 6.9 1.7E+02 0.013 16.8 2.8 13 463-475 49-61 (64)
7 d3proc1 d.52.1.1 (C:6-85) Alph 5.4 3.5E+02 0.025 16.6 4.2 33 79-111 12-44 (80)
8 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.7 1.9E+02 0.014 16.1 1.7 29 163-191 4-32 (53)
9 d1q90n_ f.23.27.1 (N:) PetN su 3.4 2.9E+02 0.021 12.8 3.4 22 84-105 7-28 (31)
10 d1v54g_ f.23.2.1 (G:) Mitochon 3.2 4.2E+02 0.031 16.4 2.7 18 203-220 16-33 (84)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.7e-38 Score=305.69 Aligned_cols=402 Identities=13% Similarity=0.003 Sum_probs=273.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhccccccccccchhhHhhhhhhhhhhccccccccccccCCchHHHHHHHHHHHHHHH
Q 010433 19 EYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLV 98 (511)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i 98 (511)
++++++++|.+...+.++.+..+++...++.+ .|.+ +|+ |+|.+|.|++.+++.+++.+
T Consensus 16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~--~p~~-~~~------------------g~s~~~~g~~~s~~~~~~~~ 74 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALA--MPYL-VEQ------------------GFSRGDLGFALSGISIAYGF 74 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH--HHHT-TSS------------------TTCSSCHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHh------------------CcCHHHHHHHHHHHHHHHHH
Confidence 44455667777777788888888887776654 3433 334 88999999999999999999
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhhhhhhhhhhhhHhHhcCCCCCCchhH
Q 010433 99 STFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVN 174 (511)
Q Consensus 99 ~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 174 (511)
+++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+....++.|++|+++|++++
T Consensus 75 ~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~ 154 (447)
T d1pw4a_ 75 SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV 154 (447)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999988764 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccCChhHHHhcCCHHHHHHHHHHHhCCCcc
Q 010433 175 QLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANV 253 (511)
Q Consensus 175 ~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (511)
++.+.+..+|.++++.++....... .+||+.|++.+++.++..+. +.+++|+|+........+.
T Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 219 (447)
T d1pw4a_ 155 SVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------- 219 (447)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------
T ss_pred cccccccchhhhhhhhhhhhHhhhh-hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh--------------
Confidence 9999999999999998865544322 37999999988888776554 4556666643211111100
Q ss_pred hHHHHHHHHHHHHHHhccCChHHhhccCCchhHHHHHHHHHHHhhhcchhhHHhcHHHHHHH-cCCCChhHHHHHHHHHH
Q 010433 254 DAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI 332 (511)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 332 (511)
+.+..+..++ +.++.....+...+.....+...... ...+......+....+.|.++.+ .+++..+.+.......+
T Consensus 220 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
T d1pw4a_ 220 KNDYPDDYNE--KAEQELTAKQIFMQYVLPNKLLWYIA-IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 296 (447)
T ss_dssp CCC---------------CCTHHHHHHTSSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred hhhcccchhh--ccccccchhhHHHHHHHcCchHHHHH-HHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchh
Confidence 0000000000 00000111111111111122222222 33444455556677788888755 78999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHhccccccccee
Q 010433 333 ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 412 (511)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (511)
..+++.++.+++.||++|++..................... ......+...+..++.+++.. ...+....+
T Consensus 297 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 367 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM--------NPAGNPTVDMICMIVIGFLIY-GPVMLIGLH 367 (447)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS--------CCTTCHHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999876554443333322222222110 111223333444444444333 223444566
Q ss_pred ecccCCccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Q 010433 413 PSELFPLEMRSAGQSVVVCNNLLF-TALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 468 (511)
Q Consensus 413 ~~~~~p~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (511)
..|.+|++.|+++.|+.+...+++ ..++|.+.+.+.+..++...+.+...+.+.+.
T Consensus 368 ~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 424 (447)
T d1pw4a_ 368 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 424 (447)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 689999999999999999888875 45678889999999886654444444333333
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=7.5e-28 Score=230.72 Aligned_cols=356 Identities=12% Similarity=0.070 Sum_probs=227.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISM----LLLGRIFLGMGIGFGN 154 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~----l~~~r~l~G~~~~~~~ 154 (511)
|+|.+++|++.+++.++..++++++|+++||+|||++++.+..+..++..+..+..+... .++.+.+.+.+.+...
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 889999999999999999999999999999999999999999999999888888766544 3455556555555555
Q ss_pred hhhhhHhHhcCCC--CCCchhHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHHhccccCChhHH
Q 010433 155 QAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM-FVGGLFLPETPNSL 231 (511)
Q Consensus 155 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~esp~~l 231 (511)
........+..++ +++.+..+........+..+++.+++..... +|+..+........+. .+..+..+|+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 194 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTDAPSS- 194 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHSSCCCSCSS-
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc---cccccccchhhHHHHHHHHHHHHhcccccc-
Confidence 5555444444332 3455677788888888999999887665543 4666665555555444 4446667776531
Q ss_pred HhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccCCh---HHhhccCCchhHHHHHHHHHHHhhhcchhhHHhc
Q 010433 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPF---RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (511)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
+++.++. +++..+... .+..+.+..+....... .... ........
T Consensus 195 --~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~ 242 (417)
T d1pv7a_ 195 --ATVANAV-------------------------GANHSAFSLKLALELFRQPKLWFLSLYVI-GVSC----TYDVFDQQ 242 (417)
T ss_dssp --SCSSHHH-------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHH-HHHH----HHHHHHHH
T ss_pred --hhhhhhh-------------------------hhhcccccccccccccccccccchhhhhH-HHHH----HHHhhhcc
Confidence 1111110 000011111 11222222222221111 1111 11112222
Q ss_pred HHHHHHH----cCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010433 309 APVIFQS----LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 384 (511)
Q Consensus 309 ~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
.+.+... .+.+....+.......++..++..+.+++.||.++|+.+..+..+..++.+.+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------- 309 (417)
T d1pv7a_ 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------- 309 (417)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred ccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------------
Confidence 2222222 23344556677778888899999999999999999998888777766665554432
Q ss_pred chhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHH
Q 010433 385 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVV-CNNLLFTALIAQAFLAALCHLKFGI-FLVFGGL 462 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 462 (511)
...+.......+.+.+.+... +....+..|.+|++.|+++.|+.. ....++..++|.+.|.+.|+.|+.. +++.+++
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~ 388 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 223444555555555555444 344566689999999999999864 4567899999999999999988654 4455555
Q ss_pred HHHHHHHHHhccccCCCCCHHH
Q 010433 463 VVIMSAFIYFFLPETKQVPIEE 484 (511)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (511)
.++..++..+.++++++.+..+
T Consensus 389 ~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 389 ALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHhhcCCCccchhH
Confidence 5555556666666666555443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.40 E-value=4.2e-13 Score=128.56 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=116.0
Q ss_pred HHhcHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 010433 305 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 384 (511)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
+....|. +++.|++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++........
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 113 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--------- 113 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh---------
Confidence 3444453 466899999999999999999999999999999999999999988888877777666543211
Q ss_pred chhHHHHHHHHHHHHHHhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhh-HHHHHHH
Q 010433 385 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL-KFGI-FLVFGGL 462 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 462 (511)
...+..++...+.+.+.+..+. ....++.|.+|+++|+.++++.+....+|..+++.+.+...+.. ++.. +++...+
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 1223344444555555444443 33556689999999999999999999999999999888776654 3443 3444444
Q ss_pred HHHHHHHHHhccccC
Q 010433 463 VVIMSAFIYFFLPET 477 (511)
Q Consensus 463 ~~~~~~~~~~~~~~~ 477 (511)
..+..++.+.+.++.
T Consensus 193 ~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 193 AILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHhcccc
Confidence 445555555555544
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.39 E-value=3.1e-13 Score=127.72 Aligned_cols=146 Identities=9% Similarity=0.062 Sum_probs=127.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 158 (511)
+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhcCCCCCCchhHHHH-HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHH-hccccC
Q 010433 159 LYLSEMAPAKIRGAVNQLF-QLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPE 226 (511)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 226 (511)
+++.|.+|+++|+++.+.. +....+|..++|.+++.+.+ ..||+..|++.+++.++..++ .+.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--SIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975 56778999999999655543 358999999988887776555 344443
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=21.16 E-value=2.2e+02 Score=23.85 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=35.5
Q ss_pred HHHHHhhhhhhhhhhhhHhHhcCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 010433 143 RIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192 (511)
Q Consensus 143 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 192 (511)
-++.|+..+........++.+..+-++---+.++...+...|.+..++.+
T Consensus 282 A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 282 ALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhc
Confidence 34456555656666666666666667767788999888888888888773
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.87 E-value=1.7e+02 Score=16.82 Aligned_cols=13 Identities=0% Similarity=0.363 Sum_probs=5.3
Q ss_pred HHHHHHHHHhccc
Q 010433 463 VVIMSAFIYFFLP 475 (511)
Q Consensus 463 ~~~~~~~~~~~~~ 475 (511)
.+..+++.+++.+
T Consensus 49 ~~~~~~~~~~~f~ 61 (64)
T d2iuba2 49 MGVIAVIMVVYFK 61 (64)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHh
Confidence 3333344444443
No 7
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=5.44 E-value=3.5e+02 Score=16.60 Aligned_cols=33 Identities=6% Similarity=-0.170 Sum_probs=19.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 010433 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 111 (511)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 111 (511)
|+++.|..-=...-.-..-+-.-+-.-+.|+||
T Consensus 12 gLt~~qa~~RLa~E~~A~~~~~~lr~~lg~~fa 44 (80)
T d3proc1 12 GIFPTQLPQYLQTEKLARTQAAAIEREFGAQFA 44 (80)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 778887766555555555555555555555553
No 8
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.72 E-value=1.9e+02 Score=16.11 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=16.4
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 010433 163 EMAPAKIRGAVNQLFQLTTCLGILVANLI 191 (511)
Q Consensus 163 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l 191 (511)
....+++...+..+.......|.+-+-.+
T Consensus 4 k~iG~k~~~ia~~wips~~~~G~a~gl~l 32 (53)
T d2fyuk1 4 RFLGPRYRQLARNWVPTASLWGAVGAVGL 32 (53)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhheee
Confidence 34444555566666666666666655444
No 9
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.44 E-value=2.9e+02 Score=12.84 Aligned_cols=22 Identities=9% Similarity=-0.053 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 010433 84 VLTLFTSSLYFAGLVSTFGASY 105 (511)
Q Consensus 84 ~~g~~~s~~~l~~~i~~~~~g~ 105 (511)
+++|...+..+...+.-.+||+
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Confidence 3455555555555555555553
No 10
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.23 E-value=4.2e+02 Score=16.38 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHH
Q 010433 203 WRLSLGLATVPATLMFVG 220 (511)
Q Consensus 203 wr~~f~~~~~~~~~~~~~ 220 (511)
||-+-++.+++++++..+
T Consensus 16 Wkkis~~va~P~i~l~~~ 33 (84)
T d1v54g_ 16 WRFLTFGLALPSVALCTL 33 (84)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998888888888776555
Done!