Query 010435
Match_columns 510
No_of_seqs 285 out of 2982
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 00:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 2.8E-70 6.2E-75 644.4 49.3 469 8-507 519-1014(2272)
2 TIGR01257 rim_protein retinal- 100.0 2.6E-44 5.6E-49 425.1 41.7 381 72-507 1625-2023(2272)
3 KOG0059 Lipid exporter ABCA1 a 100.0 3.9E-39 8.5E-44 365.8 26.6 379 77-507 260-651 (885)
4 COG1137 YhbG ABC-type (unclass 99.8 5E-21 1.1E-25 174.9 2.5 85 406-505 4-88 (243)
5 COG1125 OpuBA ABC-type proline 99.8 2.8E-20 6.1E-25 175.9 7.6 88 407-510 2-90 (309)
6 COG1126 GlnQ ABC-type polar am 99.8 6E-20 1.3E-24 170.3 9.3 90 406-510 2-92 (240)
7 COG1131 CcmA ABC-type multidru 99.8 1.1E-19 2.4E-24 182.4 10.1 86 406-507 4-89 (293)
8 COG3842 PotA ABC-type spermidi 99.8 1.4E-19 3.1E-24 182.8 9.7 89 404-510 3-92 (352)
9 TIGR00956 3a01205 Pleiotropic 99.8 4.1E-17 8.9E-22 193.8 31.6 87 405-507 758-847 (1394)
10 PRK13537 nodulation ABC transp 99.8 3.6E-19 7.8E-24 180.1 11.1 86 405-507 6-91 (306)
11 COG1120 FepC ABC-type cobalami 99.8 3.5E-19 7.6E-24 172.6 10.1 85 406-506 2-86 (258)
12 COG4152 ABC-type uncharacteriz 99.8 1.1E-19 2.4E-24 170.8 5.6 82 406-507 2-83 (300)
13 COG4555 NatA ABC-type Na+ tran 99.8 1.1E-19 2.3E-24 166.4 5.2 85 407-507 2-86 (245)
14 COG1135 AbcC ABC-type metal io 99.8 4E-19 8.7E-24 172.8 9.4 92 407-508 2-96 (339)
15 COG1127 Ttg2A ABC-type transpo 99.8 4.3E-19 9.2E-24 167.1 8.9 89 404-507 6-96 (263)
16 COG3839 MalK ABC-type sugar tr 99.8 5.7E-19 1.2E-23 177.5 10.1 87 406-510 3-90 (338)
17 COG0410 LivF ABC-type branched 99.8 7.3E-19 1.6E-23 165.0 10.0 89 406-509 3-92 (237)
18 PRK13536 nodulation factor exp 99.8 8.9E-19 1.9E-23 179.3 11.1 87 404-507 39-125 (340)
19 COG0411 LivG ABC-type branched 99.8 4.2E-19 9.2E-24 167.9 6.5 85 406-505 4-88 (250)
20 COG3845 ABC-type uncharacteriz 99.8 9E-19 2E-23 179.8 9.0 88 405-507 3-90 (501)
21 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 1.3E-18 2.8E-23 167.9 9.5 84 405-507 3-86 (254)
22 COG3638 ABC-type phosphate/pho 99.8 1.6E-18 3.4E-23 162.9 9.8 88 406-507 3-92 (258)
23 TIGR03522 GldA_ABC_ATP gliding 99.7 4.2E-18 9E-23 172.1 10.9 84 407-507 3-86 (301)
24 COG1136 SalX ABC-type antimicr 99.7 6E-18 1.3E-22 160.9 10.6 93 407-510 2-98 (226)
25 TIGR01288 nodI ATP-binding ABC 99.7 8.1E-18 1.8E-22 170.2 11.1 86 405-507 3-88 (303)
26 COG2884 FtsE Predicted ATPase 99.7 2.8E-18 6E-23 155.9 6.2 85 407-505 2-88 (223)
27 TIGR02314 ABC_MetN D-methionin 99.7 1.1E-17 2.5E-22 171.0 11.3 90 407-507 2-93 (343)
28 cd03261 ABC_Org_Solvent_Resist 99.7 1.1E-17 2.4E-22 163.0 10.3 86 407-507 1-88 (235)
29 COG1116 TauB ABC-type nitrate/ 99.7 9.3E-18 2E-22 160.0 9.3 81 406-507 3-83 (248)
30 cd03265 ABC_DrrA DrrA is the A 99.7 1.9E-17 4.1E-22 159.7 9.9 84 407-507 1-84 (220)
31 PRK09536 btuD corrinoid ABC tr 99.7 2.4E-17 5.1E-22 171.8 11.1 86 406-507 3-88 (402)
32 TIGR00960 3a0501s02 Type II (G 99.7 2.3E-17 5.1E-22 158.6 10.0 88 407-507 2-91 (216)
33 cd03224 ABC_TM1139_LivF_branch 99.7 2.5E-17 5.4E-22 159.0 10.2 86 407-507 1-86 (222)
34 cd03218 ABC_YhbG The ABC trans 99.7 2.2E-17 4.7E-22 160.6 9.7 86 407-507 1-86 (232)
35 cd03263 ABC_subfamily_A The AB 99.7 2.5E-17 5.4E-22 158.9 10.0 86 407-507 1-86 (220)
36 cd03216 ABC_Carb_Monos_I This 99.7 3.3E-17 7.1E-22 150.7 10.3 82 407-503 1-82 (163)
37 TIGR03410 urea_trans_UrtE urea 99.7 2.9E-17 6.2E-22 159.5 10.2 86 407-507 1-86 (230)
38 cd03266 ABC_NatA_sodium_export 99.7 3.4E-17 7.4E-22 157.7 10.5 88 407-507 2-89 (218)
39 cd03233 ABC_PDR_domain1 The pl 99.7 4.1E-17 8.8E-22 155.4 10.6 89 406-507 3-94 (202)
40 PRK10895 lipopolysaccharide AB 99.7 3.7E-17 8.1E-22 159.9 10.6 86 406-506 3-88 (241)
41 PRK13540 cytochrome c biogenes 99.7 3.8E-17 8.3E-22 155.3 10.3 84 407-507 2-85 (200)
42 PRK10247 putative ABC transpor 99.7 4.5E-17 9.6E-22 157.8 10.9 88 404-507 5-92 (225)
43 cd03225 ABC_cobalt_CbiO_domain 99.7 2.8E-17 6E-22 157.5 9.3 83 409-505 2-84 (211)
44 cd03259 ABC_Carb_Solutes_like 99.7 2.3E-17 4.9E-22 158.3 8.6 82 407-506 1-82 (213)
45 cd03229 ABC_Class3 This class 99.7 4.9E-17 1.1E-21 151.7 10.5 86 407-507 1-87 (178)
46 PRK11432 fbpC ferric transport 99.7 4E-17 8.7E-22 167.8 10.7 86 404-507 4-89 (351)
47 PRK13538 cytochrome c biogenes 99.7 4.5E-17 9.7E-22 155.3 10.2 84 407-507 2-85 (204)
48 cd03226 ABC_cobalt_CbiO_domain 99.7 2.9E-17 6.4E-22 156.6 8.8 80 408-505 1-80 (205)
49 cd03268 ABC_BcrA_bacitracin_re 99.7 3.8E-17 8.2E-22 156.2 9.6 83 407-507 1-83 (208)
50 cd03219 ABC_Mj1267_LivG_branch 99.7 3.7E-17 7.9E-22 159.4 9.6 85 407-507 1-86 (236)
51 TIGR01189 ccmA heme ABC export 99.7 4.3E-17 9.3E-22 154.7 9.8 84 407-507 1-84 (198)
52 PRK13648 cbiO cobalt transport 99.7 6E-17 1.3E-21 161.1 11.3 88 404-505 5-92 (269)
53 PRK13635 cbiO cobalt transport 99.7 6E-17 1.3E-21 161.9 11.3 87 405-505 4-90 (279)
54 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 3.8E-17 8.3E-22 157.3 9.5 90 407-507 1-93 (218)
55 cd03228 ABCC_MRP_Like The MRP 99.7 5.2E-17 1.1E-21 150.6 9.9 87 407-507 1-87 (171)
56 COG1129 MglA ABC-type sugar tr 99.7 4.3E-17 9.3E-22 170.6 10.5 89 404-507 6-94 (500)
57 cd03260 ABC_PstB_phosphate_tra 99.7 3.8E-17 8.1E-22 158.4 9.4 86 407-507 1-92 (227)
58 PRK09493 glnQ glutamine ABC tr 99.7 5.5E-17 1.2E-21 158.6 10.6 86 407-507 2-88 (240)
59 PRK13637 cbiO cobalt transport 99.7 6.5E-17 1.4E-21 162.3 11.3 90 406-505 2-92 (287)
60 cd03231 ABC_CcmA_heme_exporter 99.7 4.5E-17 9.8E-22 154.9 9.6 84 407-507 1-84 (201)
61 PRK13644 cbiO cobalt transport 99.7 6.3E-17 1.4E-21 161.4 11.0 85 407-505 2-86 (274)
62 cd03256 ABC_PhnC_transporter A 99.7 4.7E-17 1E-21 159.1 9.8 87 407-507 1-89 (241)
63 TIGR03265 PhnT2 putative 2-ami 99.7 5.2E-17 1.1E-21 167.2 10.5 84 406-507 4-87 (353)
64 TIGR02673 FtsE cell division A 99.7 6.3E-17 1.4E-21 155.4 10.3 87 407-507 2-90 (214)
65 PRK13632 cbiO cobalt transport 99.7 7.3E-17 1.6E-21 160.7 11.1 88 404-505 5-92 (271)
66 COG2274 SunT ABC-type bacterio 99.7 3.2E-17 6.9E-22 180.9 9.3 90 404-507 469-558 (709)
67 PRK13646 cbiO cobalt transport 99.7 7.3E-17 1.6E-21 161.9 11.1 89 407-505 3-94 (286)
68 PRK14250 phosphate ABC transpo 99.7 6.6E-17 1.4E-21 158.2 10.5 86 406-507 3-88 (241)
69 cd03230 ABC_DR_subfamily_A Thi 99.7 7.4E-17 1.6E-21 149.8 10.3 83 407-506 1-83 (173)
70 cd03262 ABC_HisP_GlnQ_permease 99.7 5.5E-17 1.2E-21 155.6 9.7 86 407-507 1-87 (213)
71 PRK11614 livF leucine/isoleuci 99.7 9.2E-17 2E-21 156.7 11.4 86 406-506 5-90 (237)
72 cd03295 ABC_OpuCA_Osmoprotecti 99.7 6.2E-17 1.4E-21 158.4 10.2 86 407-507 1-86 (242)
73 PRK10851 sulfate/thiosulfate t 99.7 6E-17 1.3E-21 166.7 10.5 84 406-507 2-85 (353)
74 cd03246 ABCC_Protease_Secretio 99.7 8.7E-17 1.9E-21 149.3 10.6 87 407-507 1-87 (173)
75 COG1118 CysA ABC-type sulfate/ 99.7 2.3E-17 4.9E-22 160.3 6.8 90 406-510 2-92 (345)
76 TIGR03411 urea_trans_UrtD urea 99.7 7.9E-17 1.7E-21 157.6 10.8 87 406-507 2-88 (242)
77 cd03369 ABCC_NFT1 Domain 2 of 99.7 8.1E-17 1.7E-21 153.9 10.6 89 405-507 5-93 (207)
78 PRK10908 cell division protein 99.7 7.9E-17 1.7E-21 155.6 10.6 87 407-507 2-90 (222)
79 PLN03140 ABC transporter G fam 99.7 9.4E-15 2E-19 173.5 30.3 97 405-507 866-964 (1470)
80 COG1124 DppF ABC-type dipeptid 99.7 5.9E-17 1.3E-21 153.3 9.4 90 406-506 3-92 (252)
81 PRK13647 cbiO cobalt transport 99.7 8.5E-17 1.8E-21 160.4 11.0 85 406-505 4-88 (274)
82 cd03296 ABC_CysA_sulfate_impor 99.7 5.4E-17 1.2E-21 158.6 9.4 83 407-507 3-85 (239)
83 PRK10575 iron-hydroxamate tran 99.7 9E-17 2E-21 159.5 11.1 87 404-506 9-95 (265)
84 PRK13636 cbiO cobalt transport 99.7 1E-16 2.2E-21 160.6 11.5 87 405-505 4-91 (283)
85 PRK13634 cbiO cobalt transport 99.7 8.5E-17 1.8E-21 161.7 10.9 89 407-505 3-94 (290)
86 cd03252 ABCC_Hemolysin The ABC 99.7 6.8E-17 1.5E-21 157.6 9.9 87 407-507 1-87 (237)
87 PRK13633 cobalt transporter AT 99.7 1.1E-16 2.3E-21 160.2 11.4 92 405-505 3-94 (280)
88 PRK11650 ugpC glycerol-3-phosp 99.7 7.1E-17 1.5E-21 166.4 10.4 85 406-507 3-87 (356)
89 TIGR00972 3a0107s01c2 phosphat 99.7 8.1E-17 1.8E-21 158.1 10.4 87 406-507 1-93 (247)
90 PRK13652 cbiO cobalt transport 99.7 1.1E-16 2.3E-21 160.0 11.3 85 406-505 3-87 (277)
91 cd03247 ABCC_cytochrome_bd The 99.7 8.2E-17 1.8E-21 150.2 9.8 86 407-507 1-86 (178)
92 cd03269 ABC_putative_ATPase Th 99.7 5.7E-17 1.2E-21 155.2 9.0 81 407-507 1-81 (210)
93 cd03257 ABC_NikE_OppD_transpor 99.7 8.2E-17 1.8E-21 156.0 10.2 88 407-505 2-91 (228)
94 PRK11153 metN DL-methionine tr 99.7 9E-17 2E-21 165.1 11.0 90 407-507 2-93 (343)
95 cd03292 ABC_FtsE_transporter F 99.7 9.2E-17 2E-21 154.2 10.4 87 407-507 1-89 (214)
96 PRK13631 cbiO cobalt transport 99.7 1.3E-16 2.9E-21 162.2 12.1 92 404-505 19-125 (320)
97 cd03258 ABC_MetN_methionine_tr 99.7 8.3E-17 1.8E-21 156.6 10.0 90 407-507 2-93 (233)
98 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 8.6E-17 1.9E-21 156.9 10.1 84 407-507 2-85 (236)
99 TIGR01188 drrA daunorubicin re 99.7 4.9E-17 1.1E-21 164.4 8.6 71 435-507 7-77 (302)
100 cd03301 ABC_MalK_N The N-termi 99.7 6E-17 1.3E-21 155.4 8.6 83 407-507 1-83 (213)
101 PRK13638 cbiO cobalt transport 99.7 9.6E-17 2.1E-21 159.8 10.4 84 407-505 2-86 (271)
102 PRK13641 cbiO cobalt transport 99.7 1.2E-16 2.5E-21 160.5 11.0 90 406-505 2-94 (287)
103 PRK13548 hmuV hemin importer A 99.7 1.2E-16 2.7E-21 157.9 11.0 86 406-507 2-87 (258)
104 TIGR03608 L_ocin_972_ABC putat 99.7 6.4E-17 1.4E-21 154.3 8.6 84 409-507 1-87 (206)
105 PRK10253 iron-enterobactin tra 99.7 1E-16 2.2E-21 159.1 10.3 88 404-507 5-92 (265)
106 PRK11629 lolD lipoprotein tran 99.7 1.6E-16 3.4E-21 154.7 11.4 91 405-506 4-97 (233)
107 cd03293 ABC_NrtD_SsuB_transpor 99.7 8.7E-17 1.9E-21 155.1 9.4 84 407-507 1-84 (220)
108 TIGR03873 F420-0_ABC_ATP propo 99.7 1.1E-16 2.3E-21 158.2 10.2 83 407-505 2-84 (256)
109 PRK13650 cbiO cobalt transport 99.7 1.3E-16 2.9E-21 159.4 11.0 87 406-505 4-90 (279)
110 PRK11300 livG leucine/isoleuci 99.7 1.4E-16 3E-21 157.2 11.1 87 406-507 5-91 (255)
111 cd03215 ABC_Carb_Monos_II This 99.7 1.5E-16 3.3E-21 148.9 10.8 80 406-504 4-83 (182)
112 cd03244 ABCC_MRP_domain2 Domai 99.7 1.2E-16 2.5E-21 154.3 10.2 87 407-507 3-89 (221)
113 cd03251 ABCC_MsbA MsbA is an e 99.7 1E-16 2.2E-21 156.1 9.8 87 407-507 1-87 (234)
114 PRK11831 putative ABC transpor 99.7 1.3E-16 2.8E-21 158.8 10.7 88 405-507 6-95 (269)
115 cd03254 ABCC_Glucan_exporter_l 99.7 1.1E-16 2.4E-21 155.3 10.1 87 406-507 2-88 (229)
116 TIGR02315 ABC_phnC phosphonate 99.7 1E-16 2.2E-21 156.9 9.9 86 407-506 2-89 (243)
117 PRK10619 histidine/lysine/argi 99.7 1.5E-16 3.2E-21 157.2 10.7 88 405-507 4-103 (257)
118 cd03248 ABCC_TAP TAP, the Tran 99.7 1.3E-16 2.7E-21 154.6 10.0 91 404-507 9-99 (226)
119 TIGR02211 LolD_lipo_ex lipopro 99.7 1.5E-16 3.3E-21 153.4 10.6 90 407-507 2-94 (221)
120 PRK14259 phosphate ABC transpo 99.7 1.6E-16 3.5E-21 158.0 11.0 89 404-507 11-105 (269)
121 PRK14248 phosphate ABC transpo 99.7 2.3E-16 5E-21 156.9 12.0 89 404-507 19-113 (268)
122 cd03264 ABC_drug_resistance_li 99.7 9.6E-17 2.1E-21 153.8 9.0 83 407-507 1-83 (211)
123 PRK13649 cbiO cobalt transport 99.7 1.8E-16 3.9E-21 158.6 11.1 90 406-505 2-94 (280)
124 PRK13643 cbiO cobalt transport 99.7 1.9E-16 4.1E-21 159.0 11.3 89 407-505 2-93 (288)
125 PRK13539 cytochrome c biogenes 99.7 1.3E-16 2.9E-21 152.4 9.7 83 406-507 2-84 (207)
126 cd03235 ABC_Metallic_Cations A 99.7 5.9E-17 1.3E-21 155.5 7.3 78 409-507 2-79 (213)
127 PRK13543 cytochrome c biogenes 99.7 1.9E-16 4.1E-21 152.2 10.7 85 404-507 9-93 (214)
128 COG4604 CeuD ABC-type enteroch 99.7 1.8E-17 3.9E-22 151.3 3.4 85 407-507 2-86 (252)
129 PRK11247 ssuB aliphatic sulfon 99.7 1.9E-16 4E-21 156.4 10.9 83 404-507 10-92 (257)
130 PRK14267 phosphate ABC transpo 99.7 1.8E-16 3.9E-21 156.2 10.7 87 406-507 4-96 (253)
131 PRK09452 potA putrescine/sperm 99.7 1.6E-16 3.4E-21 164.6 10.7 86 404-507 12-97 (375)
132 PRK14242 phosphate transporter 99.7 1.9E-16 4.2E-21 156.0 10.9 88 404-506 4-97 (253)
133 PRK14235 phosphate transporter 99.7 2.2E-16 4.8E-21 156.8 11.4 88 404-506 17-110 (267)
134 PRK11124 artP arginine transpo 99.7 1.8E-16 3.9E-21 155.2 10.6 87 406-507 2-93 (242)
135 PRK14269 phosphate ABC transpo 99.7 1.7E-16 3.7E-21 155.8 10.3 86 406-507 2-90 (246)
136 PRK15112 antimicrobial peptide 99.7 1.9E-16 4.2E-21 157.3 10.6 93 406-505 4-96 (267)
137 PRK11000 maltose/maltodextrin 99.7 1.5E-16 3.2E-21 164.9 10.2 84 406-507 3-86 (369)
138 cd03245 ABCC_bacteriocin_expor 99.7 2E-16 4.3E-21 152.5 10.4 87 407-507 3-89 (220)
139 PRK13645 cbiO cobalt transport 99.7 2.6E-16 5.6E-21 158.2 11.6 91 405-505 5-99 (289)
140 PRK11231 fecE iron-dicitrate t 99.7 1.8E-16 3.8E-21 156.5 10.1 86 406-507 2-87 (255)
141 PRK14247 phosphate ABC transpo 99.7 2.4E-16 5.2E-21 155.1 10.6 85 406-506 3-92 (250)
142 cd03288 ABCC_SUR2 The SUR doma 99.7 3E-16 6.5E-21 155.1 11.3 90 404-507 17-106 (257)
143 PRK11264 putative amino-acid A 99.7 2E-16 4.4E-21 155.5 10.0 87 406-507 3-96 (250)
144 PRK13642 cbiO cobalt transport 99.7 2.9E-16 6.3E-21 156.9 11.2 87 406-505 4-90 (277)
145 PRK10584 putative ABC transpor 99.7 3.1E-16 6.7E-21 152.1 11.1 92 405-507 5-99 (228)
146 TIGR03005 ectoine_ehuA ectoine 99.7 2.2E-16 4.7E-21 155.6 10.1 86 407-507 1-98 (252)
147 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1.8E-16 4E-21 154.7 9.5 88 407-507 1-88 (238)
148 PRK10744 pstB phosphate transp 99.7 3E-16 6.5E-21 155.3 11.2 89 404-507 11-105 (260)
149 PRK11607 potG putrescine trans 99.7 2.1E-16 4.6E-21 163.9 10.5 86 404-507 17-102 (377)
150 PRK13651 cobalt transporter AT 99.7 2.8E-16 6.1E-21 158.8 11.1 89 407-505 3-114 (305)
151 TIGR01978 sufC FeS assembly AT 99.7 1.8E-16 3.8E-21 155.2 9.4 85 407-506 1-87 (243)
152 KOG0056 Heavy metal exporter H 99.7 7E-17 1.5E-21 164.3 6.6 89 404-507 535-623 (790)
153 PRK14238 phosphate transporter 99.7 3.1E-16 6.7E-21 156.1 11.2 89 404-507 22-116 (271)
154 cd03213 ABCG_EPDR ABCG transpo 99.7 2.8E-16 6E-21 148.7 10.2 89 406-507 3-93 (194)
155 COG1122 CbiO ABC-type cobalt t 99.7 3E-16 6.4E-21 151.8 10.6 86 406-505 3-88 (235)
156 PRK13639 cbiO cobalt transport 99.7 3E-16 6.5E-21 156.6 11.0 85 407-505 2-87 (275)
157 PRK11308 dppF dipeptide transp 99.7 3.7E-16 8E-21 159.4 11.9 96 405-505 4-101 (327)
158 PRK14274 phosphate ABC transpo 99.7 3E-16 6.5E-21 155.2 10.8 89 404-507 10-104 (259)
159 KOG0057 Mitochondrial Fe/S clu 99.7 2.2E-16 4.7E-21 163.7 10.1 88 404-507 349-436 (591)
160 cd03217 ABC_FeS_Assembly ABC-t 99.7 2.2E-16 4.8E-21 150.1 9.5 86 407-507 1-88 (200)
161 TIGR03258 PhnT 2-aminoethylpho 99.7 2.3E-16 5E-21 162.7 10.3 84 406-507 5-90 (362)
162 PRK14273 phosphate ABC transpo 99.7 3.4E-16 7.5E-21 154.3 10.8 88 405-507 6-99 (254)
163 cd03267 ABC_NatA_like Similar 99.7 1.7E-16 3.7E-21 154.8 8.5 99 407-507 1-106 (236)
164 PRK11248 tauB taurine transpor 99.7 2.9E-16 6.2E-21 155.0 10.1 80 407-507 2-81 (255)
165 COG4586 ABC-type uncharacteriz 99.7 3.9E-17 8.5E-22 156.0 3.7 95 406-502 3-103 (325)
166 PRK14237 phosphate transporter 99.7 4.2E-16 9E-21 154.9 11.2 88 404-506 18-111 (267)
167 cd03214 ABC_Iron-Siderophores_ 99.7 1.3E-16 2.9E-21 149.0 7.2 79 409-503 2-80 (180)
168 cd03253 ABCC_ATM1_transporter 99.7 3E-16 6.4E-21 153.0 9.9 86 407-507 1-86 (236)
169 TIGR02982 heterocyst_DevA ABC 99.7 3.1E-16 6.8E-21 151.3 9.8 90 407-507 2-93 (220)
170 TIGR02868 CydC thiol reductant 99.7 2.9E-16 6.3E-21 170.9 10.6 87 405-507 333-419 (529)
171 PRK15079 oligopeptide ABC tran 99.7 5.6E-16 1.2E-20 158.3 12.1 100 404-505 6-107 (331)
172 PRK13640 cbiO cobalt transport 99.7 4.7E-16 1E-20 155.7 11.2 87 405-505 4-93 (282)
173 PRK14241 phosphate transporter 99.7 4.1E-16 8.9E-21 154.2 10.5 87 406-507 4-96 (258)
174 TIGR02769 nickel_nikE nickel i 99.7 4E-16 8.6E-21 154.9 10.4 94 406-505 2-97 (265)
175 PRK10070 glycine betaine trans 99.7 4.7E-16 1E-20 162.0 11.3 102 406-507 4-117 (400)
176 PRK14253 phosphate ABC transpo 99.6 3.8E-16 8.3E-21 153.5 10.1 87 406-507 3-94 (249)
177 PRK11701 phnK phosphonate C-P 99.6 5E-16 1.1E-20 153.6 10.7 86 405-505 5-98 (258)
178 PRK14256 phosphate ABC transpo 99.6 5.5E-16 1.2E-20 152.7 10.9 87 405-506 3-95 (252)
179 PRK14270 phosphate ABC transpo 99.6 5.3E-16 1.2E-20 152.7 10.7 88 405-507 3-96 (251)
180 PRK14240 phosphate transporter 99.6 5.2E-16 1.1E-20 152.7 10.6 87 406-507 3-95 (250)
181 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 4.6E-16 1E-20 174.4 11.6 89 405-507 450-538 (686)
182 PRK14268 phosphate ABC transpo 99.6 5.6E-16 1.2E-20 153.2 10.8 89 404-507 10-104 (258)
183 PRK14251 phosphate ABC transpo 99.6 5.8E-16 1.3E-20 152.4 10.9 87 406-507 4-96 (251)
184 PRK14262 phosphate ABC transpo 99.6 5.2E-16 1.1E-20 152.6 10.5 87 406-507 3-95 (250)
185 PRK14271 phosphate ABC transpo 99.6 6.5E-16 1.4E-20 154.2 11.2 89 404-507 19-112 (276)
186 PRK15056 manganese/iron transp 99.6 5.6E-16 1.2E-20 154.4 10.7 83 406-506 6-88 (272)
187 cd03289 ABCC_CFTR2 The CFTR su 99.6 5.3E-16 1.1E-20 154.4 10.3 87 406-507 2-88 (275)
188 PRK13547 hmuV hemin importer A 99.6 5.5E-16 1.2E-20 154.3 10.0 84 407-506 2-93 (272)
189 TIGR00968 3a0106s01 sulfate AB 99.6 4.4E-16 9.5E-21 152.0 9.1 82 407-506 1-82 (237)
190 PRK14255 phosphate ABC transpo 99.6 7.6E-16 1.7E-20 151.7 10.9 89 404-507 3-97 (252)
191 PRK09580 sufC cysteine desulfu 99.6 5.8E-16 1.3E-20 152.1 9.9 85 407-506 2-88 (248)
192 PRK14236 phosphate transporter 99.6 9.8E-16 2.1E-20 152.7 11.6 89 404-507 23-117 (272)
193 COG4559 ABC-type hemin transpo 99.6 3E-16 6.6E-21 145.0 7.1 86 407-508 2-87 (259)
194 PRK11160 cysteine/glutathione 99.6 5.4E-16 1.2E-20 170.2 10.4 89 405-507 337-425 (574)
195 KOG0058 Peptide exporter, ABC 99.6 3.7E-16 8E-21 167.3 8.7 91 404-507 463-553 (716)
196 cd03300 ABC_PotA_N PotA is an 99.6 4.8E-16 1E-20 151.2 8.8 83 407-507 1-83 (232)
197 PRK09984 phosphonate/organopho 99.6 8.2E-16 1.8E-20 152.4 10.6 88 405-507 3-97 (262)
198 TIGR01186 proV glycine betaine 99.6 5.8E-16 1.3E-20 159.5 9.8 72 435-507 7-82 (363)
199 TIGR02323 CP_lyasePhnK phospho 99.6 7.5E-16 1.6E-20 151.8 10.2 85 406-506 3-96 (253)
200 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 4.8E-16 1E-20 175.0 10.0 89 405-507 476-564 (710)
201 cd03298 ABC_ThiQ_thiamine_tran 99.6 5.3E-16 1.2E-20 148.6 8.9 81 407-507 1-81 (211)
202 PRK14249 phosphate ABC transpo 99.6 9.8E-16 2.1E-20 150.8 10.9 87 406-507 4-96 (251)
203 PRK14272 phosphate ABC transpo 99.6 8.1E-16 1.8E-20 151.4 10.3 87 406-507 4-96 (252)
204 PRK10762 D-ribose transporter 99.6 7.3E-16 1.6E-20 166.6 10.8 86 406-506 4-89 (501)
205 PRK14261 phosphate ABC transpo 99.6 9.9E-16 2.2E-20 151.0 10.9 89 404-507 4-98 (253)
206 PRK14254 phosphate ABC transpo 99.6 1E-15 2.2E-20 153.4 10.9 88 404-506 37-130 (285)
207 PRK09700 D-allose transporter 99.6 8.3E-16 1.8E-20 166.6 11.0 87 405-506 4-90 (510)
208 TIGR03740 galliderm_ABC gallid 99.6 7.6E-16 1.6E-20 148.9 9.5 80 407-506 1-80 (223)
209 cd03232 ABC_PDR_domain2 The pl 99.6 9.9E-16 2.1E-20 144.7 10.0 85 406-506 3-89 (192)
210 PRK14243 phosphate transporter 99.6 1E-15 2.2E-20 151.9 10.5 87 405-506 9-101 (264)
211 PRK14246 phosphate ABC transpo 99.6 7.6E-16 1.6E-20 152.2 9.5 88 404-507 8-101 (257)
212 PRK14252 phosphate ABC transpo 99.6 1.2E-15 2.6E-20 151.5 10.9 89 404-507 14-110 (265)
213 TIGR01166 cbiO cobalt transpor 99.6 6.4E-16 1.4E-20 145.6 8.5 71 435-505 6-77 (190)
214 PRK14260 phosphate ABC transpo 99.6 9.9E-16 2.2E-20 151.5 10.2 88 405-507 6-99 (259)
215 PRK14245 phosphate ABC transpo 99.6 1.2E-15 2.7E-20 150.0 10.8 88 405-507 2-95 (250)
216 cd03299 ABC_ModC_like Archeal 99.6 8.1E-16 1.8E-20 149.9 9.3 82 407-507 1-82 (235)
217 TIGR01193 bacteriocin_ABC ABC- 99.6 7.7E-16 1.7E-20 173.2 10.4 88 405-507 472-559 (708)
218 PRK11288 araG L-arabinose tran 99.6 1.1E-15 2.3E-20 165.3 11.0 87 405-506 3-89 (501)
219 PRK14275 phosphate ABC transpo 99.6 1.2E-15 2.6E-20 153.1 10.5 89 404-507 37-131 (286)
220 TIGR00958 3a01208 Conjugate Tr 99.6 6.1E-16 1.3E-20 173.8 9.3 90 405-507 477-566 (711)
221 cd03290 ABCC_SUR1_N The SUR do 99.6 9.7E-16 2.1E-20 147.6 9.5 86 408-507 2-90 (218)
222 PRK14263 phosphate ABC transpo 99.6 1.5E-15 3.3E-20 150.3 11.1 89 404-507 6-100 (261)
223 cd03294 ABC_Pro_Gly_Bertaine T 99.6 5.3E-16 1.2E-20 154.3 7.7 85 408-507 26-113 (269)
224 TIGR01277 thiQ thiamine ABC tr 99.6 8.9E-16 1.9E-20 147.4 9.0 80 408-507 2-81 (213)
225 PRK15439 autoinducer 2 ABC tra 99.6 1.4E-15 3E-20 164.7 11.6 86 405-506 10-96 (510)
226 PRK14265 phosphate ABC transpo 99.6 1.6E-15 3.5E-20 151.2 11.2 89 404-507 18-112 (274)
227 PRK14239 phosphate transporter 99.6 1.6E-15 3.5E-20 149.3 11.1 88 405-507 4-97 (252)
228 PRK13549 xylose transporter AT 99.6 1.1E-15 2.4E-20 165.4 10.8 87 405-506 4-92 (506)
229 COG1117 PstB ABC-type phosphat 99.6 8E-16 1.7E-20 142.4 8.0 87 404-505 5-97 (253)
230 PRK11022 dppD dipeptide transp 99.6 1.5E-15 3.3E-20 154.9 10.9 89 406-505 3-98 (326)
231 PRK14264 phosphate ABC transpo 99.6 2E-15 4.4E-20 152.7 11.8 88 404-506 43-136 (305)
232 TIGR02857 CydD thiol reductant 99.6 1.1E-15 2.4E-20 166.4 10.5 89 405-507 319-407 (529)
233 PRK10419 nikE nickel transport 99.6 1.3E-15 2.7E-20 151.5 10.0 94 406-505 3-98 (268)
234 PRK14266 phosphate ABC transpo 99.6 1.6E-15 3.6E-20 149.1 10.6 87 406-507 3-95 (250)
235 TIGR03415 ABC_choXWV_ATP choli 99.6 1.1E-15 2.4E-20 158.1 9.8 101 407-507 1-117 (382)
236 cd03234 ABCG_White The White s 99.6 1.3E-15 2.9E-20 147.5 9.4 86 406-506 3-91 (226)
237 PRK10418 nikD nickel transport 99.6 1.4E-15 3E-20 150.1 9.6 81 406-505 4-88 (254)
238 TIGR03375 type_I_sec_LssB type 99.6 1.4E-15 3.1E-20 170.7 10.9 89 405-507 462-550 (694)
239 cd03223 ABCD_peroxisomal_ALDP 99.6 1.7E-15 3.7E-20 139.7 9.5 75 407-507 1-75 (166)
240 PRK11176 lipid transporter ATP 99.6 1.3E-15 2.7E-20 167.8 10.2 89 405-507 340-428 (582)
241 PRK15093 antimicrobial peptide 99.6 2.6E-15 5.6E-20 153.6 11.2 90 406-506 3-99 (330)
242 PRK14258 phosphate ABC transpo 99.6 2.6E-15 5.6E-20 148.7 10.7 88 405-507 6-99 (261)
243 PRK09473 oppD oligopeptide tra 99.6 3E-15 6.6E-20 152.9 11.5 91 404-505 10-106 (330)
244 CHL00131 ycf16 sulfate ABC tra 99.6 2.4E-15 5.3E-20 148.0 10.3 86 405-506 6-94 (252)
245 cd03250 ABCC_MRP_domain1 Domai 99.6 2E-15 4.3E-20 143.9 9.3 77 407-507 1-77 (204)
246 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 2.3E-15 5E-20 135.5 9.2 70 407-503 1-70 (144)
247 PRK10790 putative multidrug tr 99.6 2.3E-15 4.9E-20 166.1 10.7 88 405-507 339-426 (592)
248 PRK10522 multidrug transporter 99.6 2.4E-15 5.3E-20 164.3 10.8 88 405-507 321-408 (547)
249 COG4167 SapF ABC-type antimicr 99.6 6.9E-16 1.5E-20 139.3 5.2 93 406-505 4-96 (267)
250 PRK10771 thiQ thiamine transpo 99.6 2.5E-15 5.5E-20 146.1 9.6 81 407-507 2-82 (232)
251 PRK14244 phosphate ABC transpo 99.6 2.3E-15 5E-20 148.2 9.4 85 407-506 6-96 (251)
252 PRK14257 phosphate ABC transpo 99.6 4.3E-15 9.3E-20 151.6 11.6 91 404-507 78-174 (329)
253 TIGR01846 type_I_sec_HlyB type 99.6 1.8E-15 4E-20 169.8 9.7 89 405-507 454-542 (694)
254 TIGR02324 CP_lyasePhnL phospho 99.6 2.8E-15 6E-20 145.0 9.4 93 407-507 2-101 (224)
255 PRK09544 znuC high-affinity zi 99.6 3.3E-15 7.2E-20 147.0 10.0 75 406-507 4-78 (251)
256 TIGR02633 xylG D-xylose ABC tr 99.6 3.2E-15 7E-20 161.6 10.7 85 407-506 2-88 (500)
257 TIGR01842 type_I_sec_PrtD type 99.6 3.8E-15 8.2E-20 162.7 11.3 89 405-507 315-403 (544)
258 PRK13541 cytochrome c biogenes 99.6 4E-15 8.7E-20 140.9 9.9 78 407-505 2-79 (195)
259 PRK10982 galactose/methyl gala 99.6 2.7E-15 5.8E-20 161.8 9.5 81 410-505 2-82 (491)
260 cd00267 ABC_ATPase ABC (ATP-bi 99.6 5.2E-15 1.1E-19 135.1 9.7 79 409-503 2-80 (157)
261 PRK11174 cysteine/glutathione 99.6 4.5E-15 9.8E-20 163.6 11.1 87 405-507 348-434 (588)
262 PF00005 ABC_tran: ABC transpo 99.6 2.6E-15 5.7E-20 133.5 7.4 70 437-507 1-70 (137)
263 COG4988 CydD ABC-type transpor 99.6 3.9E-15 8.6E-20 156.5 9.8 87 406-507 320-406 (559)
264 TIGR02204 MsbA_rel ABC transpo 99.6 3.5E-15 7.6E-20 164.1 9.9 90 405-507 336-425 (576)
265 COG1119 ModF ABC-type molybden 99.6 2.6E-15 5.5E-20 142.4 7.4 84 404-502 29-112 (257)
266 KOG0055 Multidrug/pheromone ex 99.6 2.3E-15 5E-20 169.8 8.1 91 404-507 348-438 (1228)
267 PRK10789 putative multidrug tr 99.6 4.7E-15 1E-19 162.7 10.3 89 405-507 312-400 (569)
268 cd03297 ABC_ModC_molybdenum_tr 99.6 4.8E-15 1E-19 142.4 9.0 80 410-507 4-86 (214)
269 PRK09700 D-allose transporter 99.6 4.9E-15 1.1E-19 160.6 9.9 83 405-504 264-346 (510)
270 COG1134 TagH ABC-type polysacc 99.6 4.8E-15 1E-19 140.6 8.4 79 406-484 3-90 (249)
271 PRK13657 cyclic beta-1,2-gluca 99.6 6.8E-15 1.5E-19 162.2 11.0 88 405-507 333-420 (588)
272 TIGR01192 chvA glucan exporter 99.6 6.9E-15 1.5E-19 161.8 11.0 88 405-507 333-420 (585)
273 COG1132 MdlB ABC-type multidru 99.6 5.6E-15 1.2E-19 162.1 10.1 88 405-507 327-414 (567)
274 PRK10938 putative molybdenum t 99.6 4.3E-15 9.3E-20 160.2 9.0 84 406-505 3-86 (490)
275 COG4674 Uncharacterized ABC-ty 99.6 2.9E-15 6.3E-20 136.7 6.1 86 405-505 4-90 (249)
276 PRK11144 modC molybdate transp 99.6 9.2E-15 2E-19 150.8 10.4 83 407-507 2-87 (352)
277 TIGR02203 MsbA_lipidA lipid A 99.6 6.5E-15 1.4E-19 161.8 9.8 89 405-507 329-417 (571)
278 PLN03130 ABC transporter C fam 99.6 7.8E-15 1.7E-19 176.4 11.2 89 405-507 1236-1324(1622)
279 TIGR02142 modC_ABC molybdenum 99.6 7.8E-15 1.7E-19 151.5 9.6 80 411-507 4-86 (354)
280 COG1123 ATPase components of v 99.6 9.7E-15 2.1E-19 154.0 10.3 98 404-505 278-376 (539)
281 PRK10261 glutathione transport 99.6 1.2E-14 2.5E-19 160.9 11.4 97 405-505 312-410 (623)
282 TIGR02633 xylG D-xylose ABC tr 99.6 6.9E-15 1.5E-19 159.1 9.3 89 405-505 256-345 (500)
283 PRK10938 putative molybdenum t 99.6 8E-15 1.7E-19 158.1 9.5 87 404-505 258-345 (490)
284 PRK13549 xylose transporter AT 99.6 8.3E-15 1.8E-19 158.6 9.4 89 405-505 258-347 (506)
285 TIGR01194 cyc_pep_trnsptr cycl 99.6 1.2E-14 2.5E-19 159.1 10.6 92 405-507 336-427 (555)
286 COG4181 Predicted ABC-type tra 99.6 8.4E-15 1.8E-19 131.1 7.6 94 406-510 6-103 (228)
287 PLN03232 ABC transporter C fam 99.5 9.8E-15 2.1E-19 175.2 10.6 89 405-507 1233-1321(1495)
288 PTZ00243 ABC transporter; Prov 99.5 1.6E-14 3.4E-19 173.5 10.9 89 405-507 1307-1395(1560)
289 cd03222 ABC_RNaseL_inhibitor T 99.5 1.3E-14 2.9E-19 134.8 8.0 68 410-506 4-71 (177)
290 TIGR00957 MRP_assoc_pro multi 99.5 1.7E-14 3.7E-19 173.3 10.8 89 405-507 1283-1371(1522)
291 PRK10261 glutathione transport 99.5 2.7E-14 5.9E-19 158.0 11.0 91 404-505 10-113 (623)
292 PRK03695 vitamin B12-transport 99.5 1.4E-14 3E-19 142.4 7.8 69 436-506 11-79 (248)
293 COG4608 AppF ABC-type oligopep 99.5 1.8E-14 3.9E-19 139.3 8.2 76 405-486 3-78 (268)
294 PRK15134 microcin C ABC transp 99.5 2.4E-14 5.3E-19 155.8 10.3 89 406-505 5-101 (529)
295 TIGR02770 nickel_nikD nickel i 99.5 1.6E-14 3.4E-19 140.4 7.5 67 436-505 1-71 (230)
296 COG4619 ABC-type uncharacteriz 99.5 7E-15 1.5E-19 131.2 4.4 72 435-507 17-88 (223)
297 PTZ00265 multidrug resistance 99.5 1.7E-14 3.7E-19 171.9 8.9 89 406-507 382-471 (1466)
298 KOG0055 Multidrug/pheromone ex 99.5 1.9E-14 4.1E-19 162.4 8.6 91 404-507 985-1075(1228)
299 PTZ00265 multidrug resistance 99.5 2.7E-14 5.9E-19 170.2 9.9 90 405-507 1164-1307(1466)
300 PRK11819 putative ABC transpor 99.5 3.3E-14 7.2E-19 155.5 9.6 78 404-507 4-81 (556)
301 TIGR03269 met_CoM_red_A2 methy 99.5 4.5E-14 9.7E-19 153.4 10.5 93 404-506 277-375 (520)
302 COG0396 sufC Cysteine desulfur 99.5 4.4E-14 9.5E-19 132.5 8.5 87 406-506 3-91 (251)
303 COG4525 TauB ABC-type taurine 99.5 2.6E-14 5.7E-19 130.5 6.6 82 407-507 4-85 (259)
304 PRK10982 galactose/methyl gala 99.5 3.6E-14 7.9E-19 153.1 8.8 83 405-504 249-331 (491)
305 PLN03211 ABC transporter G-25; 99.5 3.2E-14 6.9E-19 157.7 7.9 69 434-507 81-151 (659)
306 PRK15064 ABC transporter ATP-b 99.5 5.3E-14 1.1E-18 153.2 9.5 73 407-506 2-74 (530)
307 PRK15134 microcin C ABC transp 99.5 5.4E-14 1.2E-18 153.1 9.4 96 405-505 274-371 (529)
308 cd03291 ABCC_CFTR1 The CFTR su 99.5 9.5E-14 2E-18 138.8 10.3 73 404-507 37-109 (282)
309 TIGR03269 met_CoM_red_A2 methy 99.5 5.5E-14 1.2E-18 152.7 9.4 60 407-481 1-62 (520)
310 COG1101 PhnK ABC-type uncharac 99.5 1.7E-14 3.7E-19 133.7 4.3 88 407-505 2-89 (263)
311 PF12698 ABC2_membrane_3: ABC- 99.5 2.1E-14 4.5E-19 145.6 5.3 271 14-328 60-344 (344)
312 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 6.7E-14 1.4E-18 153.1 9.5 77 405-507 3-79 (552)
313 PRK10762 D-ribose transporter 99.5 6.8E-14 1.5E-18 151.3 9.3 70 436-505 267-336 (501)
314 PRK15064 ABC transporter ATP-b 99.5 8.7E-14 1.9E-18 151.5 9.4 74 405-505 318-391 (530)
315 COG4987 CydC ABC-type transpor 99.5 3E-14 6.6E-19 147.8 5.2 86 406-505 336-421 (573)
316 PRK10535 macrolide transporter 99.5 1.9E-13 4.1E-18 152.0 11.8 90 406-507 4-97 (648)
317 TIGR01271 CFTR_protein cystic 99.5 1.4E-13 3E-18 165.1 11.4 88 405-507 1216-1303(1490)
318 PRK11288 araG L-arabinose tran 99.5 9.5E-14 2.1E-18 150.2 8.9 71 435-505 267-337 (501)
319 COG4618 ArpD ABC-type protease 99.5 1E-13 2.2E-18 142.8 8.2 89 403-505 331-419 (580)
320 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.5 4.9E-14 1.1E-18 136.4 5.7 64 407-485 23-86 (224)
321 KOG0065 Pleiotropic drug resis 99.5 1.5E-11 3.2E-16 139.4 26.2 315 137-507 519-875 (1391)
322 COG0444 DppD ABC-type dipeptid 99.5 1.6E-13 3.5E-18 135.5 9.2 88 407-505 2-97 (316)
323 KOG0054 Multidrug resistance-a 99.5 1.7E-13 3.7E-18 158.1 10.2 92 402-507 1134-1225(1381)
324 COG3840 ThiQ ABC-type thiamine 99.5 8.8E-14 1.9E-18 125.8 6.1 81 407-507 2-82 (231)
325 PRK10636 putative ABC transpor 99.4 1.5E-13 3.2E-18 152.5 9.1 62 407-483 2-63 (638)
326 TIGR01184 ntrCD nitrate transp 99.4 1.6E-13 3.4E-18 133.4 7.8 65 437-507 1-65 (230)
327 PRK13546 teichoic acids export 99.4 2.2E-13 4.7E-18 135.1 8.8 79 405-483 3-86 (264)
328 PRK11819 putative ABC transpor 99.4 2.4E-13 5.2E-18 148.8 9.3 75 404-505 322-396 (556)
329 COG4175 ProV ABC-type proline/ 99.4 1.2E-13 2.5E-18 134.9 6.0 102 405-507 3-117 (386)
330 PRK11147 ABC transporter ATPas 99.4 2.8E-13 6.1E-18 150.4 9.2 75 404-505 317-391 (635)
331 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 3E-13 6.4E-18 148.0 9.2 75 404-505 320-394 (552)
332 COG4598 HisP ABC-type histidin 99.4 5.6E-14 1.2E-18 126.7 2.6 89 404-507 4-104 (256)
333 PRK10636 putative ABC transpor 99.4 3.2E-13 7E-18 149.7 9.2 75 404-505 310-384 (638)
334 PRK15439 autoinducer 2 ABC tra 99.4 3E-13 6.6E-18 146.5 7.8 69 436-504 278-346 (510)
335 TIGR00954 3a01203 Peroxysomal 99.4 6.4E-13 1.4E-17 147.9 10.1 77 405-507 450-526 (659)
336 TIGR00955 3a01204 The Eye Pigm 99.4 3.8E-13 8.2E-18 148.8 8.0 71 433-507 37-110 (617)
337 cd03236 ABC_RNaseL_inhibitor_d 99.4 2.5E-13 5.5E-18 133.9 5.9 80 410-506 4-97 (255)
338 PLN03073 ABC transporter F fam 99.4 6.5E-13 1.4E-17 148.3 9.8 75 405-505 507-581 (718)
339 COG1123 ATPase components of v 99.4 1.1E-12 2.3E-17 138.7 9.5 89 406-505 5-100 (539)
340 PRK11147 ABC transporter ATPas 99.4 9.9E-13 2.2E-17 146.0 9.4 62 406-482 3-64 (635)
341 COG4615 PvdE ABC-type sideroph 99.4 1.5E-12 3.3E-17 130.3 8.0 82 405-501 321-402 (546)
342 PRK13545 tagH teichoic acids e 99.3 2.2E-12 4.8E-17 136.8 9.5 68 405-484 20-87 (549)
343 TIGR03771 anch_rpt_ABC anchore 99.3 1.1E-12 2.4E-17 126.9 6.4 60 442-507 1-60 (223)
344 PRK15177 Vi polysaccharide exp 99.3 1.6E-12 3.5E-17 124.8 6.0 50 436-485 2-52 (213)
345 COG4133 CcmA ABC-type transpor 99.3 1.3E-12 2.9E-17 119.0 4.6 63 435-499 16-78 (209)
346 cd03237 ABC_RNaseL_inhibitor_d 99.3 2.9E-12 6.3E-17 125.7 6.9 59 435-506 8-71 (246)
347 COG5265 ATM1 ABC-type transpor 99.3 1.5E-12 3.3E-17 131.5 4.9 90 404-508 260-349 (497)
348 COG4136 ABC-type uncharacteriz 99.3 6.6E-12 1.4E-16 110.3 8.1 83 407-507 3-88 (213)
349 COG4778 PhnL ABC-type phosphon 99.3 1.7E-12 3.6E-17 116.3 4.4 91 406-504 4-101 (235)
350 COG0488 Uup ATPase components 99.3 5.4E-12 1.2E-16 135.4 8.7 76 406-508 3-78 (530)
351 PRK13409 putative ATPase RIL; 99.3 6.1E-12 1.3E-16 137.9 9.2 73 404-506 338-410 (590)
352 COG4161 ArtP ABC-type arginine 99.3 2.9E-12 6.3E-17 113.8 5.1 84 406-504 2-90 (242)
353 PLN03140 ABC transporter G fam 99.3 3.7E-12 8.1E-17 151.6 7.6 73 431-507 175-250 (1470)
354 COG4107 PhnK ABC-type phosphon 99.3 3.5E-12 7.7E-17 114.6 5.5 87 404-505 4-98 (258)
355 TIGR00956 3a01205 Pleiotropic 99.3 4.3E-12 9.3E-17 151.3 7.9 73 433-507 73-149 (1394)
356 cd00820 PEPCK_HprK Phosphoenol 99.3 5.4E-12 1.2E-16 106.5 6.2 63 435-504 3-65 (107)
357 COG4172 ABC-type uncharacteriz 99.3 1.1E-11 2.3E-16 124.8 9.0 98 403-505 273-372 (534)
358 PRK13409 putative ATPase RIL; 99.3 4.1E-12 8.8E-17 139.3 5.2 69 435-504 88-168 (590)
359 TIGR00957 MRP_assoc_pro multi 99.2 2E-11 4.4E-16 147.1 9.9 75 406-507 636-710 (1522)
360 KOG0061 Transporter, ABC super 99.2 3.3E-11 7.2E-16 132.5 10.3 90 404-507 23-115 (613)
361 COG0488 Uup ATPase components 99.2 4.6E-11 9.9E-16 128.3 7.9 76 404-505 319-394 (530)
362 cd03238 ABC_UvrA The excision 99.2 3.5E-11 7.6E-16 111.8 5.9 62 434-505 8-69 (176)
363 PLN03073 ABC transporter F fam 99.1 1.3E-10 2.9E-15 129.9 8.5 65 405-484 176-243 (718)
364 PLN03232 ABC transporter C fam 99.1 1.5E-10 3.2E-15 139.5 8.7 78 405-507 613-690 (1495)
365 COG4148 ModC ABC-type molybdat 99.1 1.1E-10 2.3E-15 112.6 5.8 69 439-507 16-87 (352)
366 PLN03130 ABC transporter C fam 99.1 1.8E-10 3.8E-15 139.2 8.5 77 405-507 613-690 (1622)
367 TIGR01271 CFTR_protein cystic 99.0 2.6E-10 5.7E-15 137.2 7.6 59 435-507 440-498 (1490)
368 PTZ00243 ABC transporter; Prov 99.0 5.7E-10 1.2E-14 134.6 7.8 60 434-507 673-732 (1560)
369 COG4172 ABC-type uncharacteriz 99.0 1.2E-09 2.6E-14 110.2 8.0 92 404-506 4-103 (534)
370 TIGR03238 dnd_assoc_3 dnd syst 99.0 4.6E-10 1E-14 117.1 4.3 63 435-503 20-85 (504)
371 cd03278 ABC_SMC_barmotin Barmo 98.9 9.8E-10 2.1E-14 104.2 2.7 64 438-506 14-86 (197)
372 KOG0054 Multidrug resistance-a 98.8 1.1E-08 2.4E-13 118.9 10.0 78 403-506 515-592 (1381)
373 KOG2355 Predicted ABC-type tra 98.8 1.4E-08 3.1E-13 94.0 7.2 69 404-486 11-79 (291)
374 COG4138 BtuD ABC-type cobalami 98.8 3.9E-09 8.4E-14 95.3 3.1 66 436-503 14-79 (248)
375 PRK06002 fliI flagellum-specif 98.7 2.9E-08 6.2E-13 104.0 8.9 88 404-506 137-230 (450)
376 cd03272 ABC_SMC3_euk Eukaryoti 98.7 6.2E-09 1.3E-13 101.9 2.3 67 435-506 16-108 (243)
377 TIGR02858 spore_III_AA stage I 98.7 2E-08 4.3E-13 99.5 5.4 60 448-507 112-171 (270)
378 KOG0927 Predicted transporter 98.7 1.5E-08 3.2E-13 105.9 3.7 68 404-485 387-454 (614)
379 cd03274 ABC_SMC4_euk Eukaryoti 98.6 1E-08 2.2E-13 98.4 0.9 52 435-507 18-70 (212)
380 KOG0060 Long-chain acyl-CoA tr 98.5 1.9E-07 4.2E-12 98.3 8.6 80 404-505 431-510 (659)
381 cd03270 ABC_UvrA_I The excisio 98.5 5.5E-08 1.2E-12 94.3 3.7 34 434-467 8-42 (226)
382 PRK07196 fliI flagellum-specif 98.5 1.1E-07 2.3E-12 99.7 6.0 71 435-506 144-222 (434)
383 COG3845 ABC-type uncharacteriz 98.5 5.9E-07 1.3E-11 93.4 10.1 87 404-504 255-342 (501)
384 PRK07721 fliI flagellum-specif 98.4 2.7E-07 5.9E-12 97.3 6.4 70 435-505 147-223 (438)
385 cd03279 ABC_sbcCD SbcCD and ot 98.4 1.3E-07 2.9E-12 90.7 3.3 66 438-505 18-85 (213)
386 COG1129 MglA ABC-type sugar tr 98.4 6.6E-07 1.4E-11 94.6 8.3 69 436-504 274-342 (500)
387 cd01130 VirB11-like_ATPase Typ 98.4 1.7E-07 3.7E-12 88.0 3.2 65 436-504 14-78 (186)
388 KOG0064 Peroxisomal long-chain 98.3 9E-07 1.9E-11 92.3 7.5 77 405-507 480-556 (728)
389 cd03240 ABC_Rad50 The catalyti 98.3 2.6E-07 5.7E-12 88.1 3.3 59 442-505 18-80 (204)
390 KOG0066 eIF2-interacting prote 98.3 4.9E-07 1.1E-11 92.1 4.6 63 404-480 584-646 (807)
391 COG4178 ABC-type uncharacteriz 98.3 1.5E-06 3.3E-11 93.7 8.6 78 404-507 390-467 (604)
392 COG1245 Predicted ATPase, RNas 98.3 9.6E-07 2.1E-11 90.8 5.6 57 405-477 341-397 (591)
393 KOG0927 Predicted transporter 98.2 1.6E-06 3.4E-11 91.0 6.4 62 404-480 73-134 (614)
394 cd03273 ABC_SMC2_euk Eukaryoti 98.2 6.7E-07 1.5E-11 88.1 3.4 59 447-505 25-86 (251)
395 PRK08149 ATP synthase SpaL; Va 98.2 1.9E-06 4.1E-11 90.3 6.2 68 435-503 140-213 (428)
396 COG2401 ABC-type ATPase fused 98.2 1.2E-06 2.7E-11 89.0 3.6 49 434-482 396-452 (593)
397 PRK09825 idnK D-gluconate kina 98.1 1.6E-06 3.6E-11 80.6 3.9 53 446-504 2-54 (176)
398 COG4170 SapD ABC-type antimicr 98.1 2.4E-06 5.2E-11 79.6 4.8 88 407-505 4-98 (330)
399 cd01136 ATPase_flagellum-secre 98.1 3.3E-06 7.2E-11 85.6 5.6 49 435-484 58-106 (326)
400 PRK09270 nucleoside triphospha 98.1 2.1E-06 4.5E-11 83.4 3.4 55 447-506 33-91 (229)
401 PRK10078 ribose 1,5-bisphospho 98.1 4.4E-06 9.5E-11 78.4 5.5 54 447-504 2-55 (186)
402 cd03283 ABC_MutS-like MutS-lik 98.1 2.3E-06 5E-11 81.2 3.4 35 435-471 15-49 (199)
403 PRK07594 type III secretion sy 98.1 4.4E-06 9.6E-11 87.7 5.7 65 405-484 128-192 (433)
404 cd03280 ABC_MutS2 MutS2 homolo 98.1 3.8E-06 8.3E-11 79.8 4.5 44 436-479 16-68 (200)
405 KOG0065 Pleiotropic drug resis 98.0 6.2E-06 1.4E-10 94.7 6.0 70 434-507 128-200 (1391)
406 PRK07960 fliI flagellum-specif 98.0 4.3E-06 9.4E-11 87.7 4.2 69 435-504 164-237 (455)
407 PRK10416 signal recognition pa 98.0 5.6E-06 1.2E-10 84.1 4.6 60 445-504 112-176 (318)
408 PRK09862 putative ATP-dependen 98.0 5.8E-06 1.2E-10 88.6 4.6 61 410-485 188-248 (506)
409 cd03282 ABC_MSH4_euk MutS4 hom 98.0 6.4E-06 1.4E-10 78.5 4.1 34 435-468 17-50 (204)
410 PRK09099 type III secretion sy 98.0 9.1E-06 2E-10 85.6 5.3 49 435-484 152-200 (441)
411 TIGR03497 FliI_clade2 flagella 97.9 1.1E-05 2.4E-10 84.6 5.8 70 435-505 126-202 (413)
412 KOG0062 ATPase component of AB 97.9 9.2E-06 2E-10 84.9 4.6 51 404-469 78-128 (582)
413 PRK01889 GTPase RsgA; Reviewed 97.9 1.1E-05 2.4E-10 83.5 5.2 66 436-505 184-249 (356)
414 PRK06793 fliI flagellum-specif 97.9 1.5E-05 3.3E-10 83.7 6.0 65 406-485 130-194 (432)
415 PRK05688 fliI flagellum-specif 97.9 7.8E-06 1.7E-10 86.1 3.9 39 435-474 157-195 (451)
416 TIGR02546 III_secr_ATP type II 97.9 1.1E-05 2.4E-10 85.0 4.5 49 435-484 134-182 (422)
417 TIGR03498 FliI_clade3 flagella 97.9 1.5E-05 3.2E-10 83.6 5.2 50 435-485 129-178 (418)
418 PRK06995 flhF flagellar biosyn 97.9 4.5E-06 9.8E-11 88.8 1.4 42 436-477 245-286 (484)
419 TIGR01026 fliI_yscN ATPase Fli 97.9 1.4E-05 3E-10 84.5 4.9 49 435-484 152-200 (440)
420 COG1245 Predicted ATPase, RNas 97.8 1.3E-05 2.9E-10 82.6 4.3 35 444-478 97-131 (591)
421 PF13555 AAA_29: P-loop contai 97.8 1.8E-05 3.9E-10 60.0 3.9 39 437-475 12-51 (62)
422 PRK06315 type III secretion sy 97.8 1.1E-05 2.3E-10 85.0 3.5 47 435-482 153-200 (442)
423 PRK00300 gmk guanylate kinase; 97.8 1.2E-05 2.5E-10 76.5 3.5 39 445-485 3-53 (205)
424 TIGR00235 udk uridine kinase. 97.8 8.1E-06 1.8E-10 77.9 2.1 29 445-473 4-32 (207)
425 cd03243 ABC_MutS_homologs The 97.8 2.1E-05 4.6E-10 74.7 5.0 33 437-469 19-51 (202)
426 TIGR00554 panK_bact pantothena 97.8 1.1E-05 2.3E-10 80.8 2.9 37 448-484 63-101 (290)
427 PRK05922 type III secretion sy 97.8 2.5E-05 5.4E-10 82.0 5.6 49 435-484 146-194 (434)
428 PLN02796 D-glycerate 3-kinase 97.8 8.1E-06 1.8E-10 82.9 1.4 51 436-486 81-142 (347)
429 TIGR03496 FliI_clade1 flagella 97.8 2.9E-05 6.4E-10 81.4 5.5 49 435-484 126-174 (411)
430 cd01854 YjeQ_engC YjeQ/EngC. 97.8 1.5E-05 3.2E-10 80.1 3.1 68 437-507 152-223 (287)
431 cd03287 ABC_MSH3_euk MutS3 hom 97.7 2.6E-05 5.6E-10 75.3 4.1 45 435-479 19-64 (222)
432 PRK08472 fliI flagellum-specif 97.7 2.5E-05 5.4E-10 82.1 4.1 51 435-486 146-196 (434)
433 PRK03846 adenylylsulfate kinas 97.7 2.4E-05 5.1E-10 74.2 3.3 56 445-505 22-78 (198)
434 cd00879 Sar1 Sar1 subfamily. 97.7 2.9E-05 6.3E-10 72.6 3.3 50 435-485 8-65 (190)
435 TIGR02788 VirB11 P-type DNA tr 97.7 2.5E-05 5.4E-10 79.3 3.0 42 440-481 137-178 (308)
436 TIGR00767 rho transcription te 97.7 0.0001 2.3E-09 76.2 7.4 57 404-474 128-195 (415)
437 PRK14723 flhF flagellar biosyn 97.7 2.2E-05 4.8E-10 87.4 2.7 49 436-484 174-224 (767)
438 PRK08972 fliI flagellum-specif 97.7 4.4E-05 9.6E-10 80.0 4.7 39 435-474 151-189 (444)
439 TIGR02322 phosphon_PhnN phosph 97.6 8.3E-05 1.8E-09 69.1 5.9 33 447-480 1-33 (179)
440 TIGR00101 ureG urease accessor 97.6 4.3E-05 9.2E-10 72.6 4.0 57 449-507 3-59 (199)
441 TIGR02524 dot_icm_DotB Dot/Icm 97.6 4.1E-05 8.9E-10 79.1 3.7 60 445-506 132-194 (358)
442 KOG0062 ATPase component of AB 97.6 4.8E-05 1E-09 79.6 4.0 78 404-506 360-437 (582)
443 cd03271 ABC_UvrA_II The excisi 97.6 8.9E-05 1.9E-09 73.3 5.1 33 435-467 9-41 (261)
444 PRK04863 mukB cell division pr 97.6 7.9E-05 1.7E-09 89.1 5.5 48 437-485 18-65 (1486)
445 cd02025 PanK Pantothenate kina 97.6 3.6E-05 7.9E-10 74.2 2.2 36 449-484 1-41 (220)
446 TIGR00606 rad50 rad50. This fa 97.5 9.7E-05 2.1E-09 88.9 6.1 54 447-503 28-86 (1311)
447 PRK14721 flhF flagellar biosyn 97.5 4.1E-05 8.8E-10 80.3 2.2 42 444-485 188-234 (420)
448 cd03284 ABC_MutS1 MutS1 homolo 97.5 6.9E-05 1.5E-09 72.1 3.5 34 435-469 19-52 (216)
449 PRK06820 type III secretion sy 97.5 0.00012 2.6E-09 77.2 5.5 47 435-482 152-198 (440)
450 PRK06936 type III secretion sy 97.5 0.00011 2.3E-09 77.3 4.9 40 435-475 151-190 (439)
451 cd03275 ABC_SMC1_euk Eukaryoti 97.5 6.3E-05 1.4E-09 73.9 2.9 35 448-482 23-57 (247)
452 cd04155 Arl3 Arl3 subfamily. 97.4 0.00015 3.3E-09 66.4 4.8 37 449-485 16-60 (173)
453 TIGR00025 Mtu_efflux ABC trans 97.4 0.059 1.3E-06 52.2 22.9 144 129-278 51-197 (232)
454 cd03285 ABC_MSH2_euk MutS2 hom 97.4 0.00017 3.7E-09 69.7 4.8 33 435-467 18-50 (222)
455 TIGR00368 Mg chelatase-related 97.4 8.9E-05 1.9E-09 79.8 3.2 52 435-486 199-250 (499)
456 PRK00635 excinuclease ABC subu 97.4 0.00016 3.4E-09 87.3 4.9 43 435-481 949-991 (1809)
457 PRK00098 GTPase RsgA; Reviewed 97.4 0.00016 3.6E-09 73.0 4.3 35 446-480 163-197 (298)
458 TIGR01247 drrB daunorubicin re 97.3 0.078 1.7E-06 51.4 22.7 137 134-277 67-204 (236)
459 cd03276 ABC_SMC6_euk Eukaryoti 97.3 0.00019 4.1E-09 68.1 3.9 34 436-470 11-44 (198)
460 TIGR00630 uvra excinuclease AB 97.3 0.00016 3.4E-09 83.1 4.0 31 435-465 621-651 (924)
461 PRK00349 uvrA excinuclease ABC 97.3 0.0002 4.2E-09 82.5 4.5 33 435-467 623-655 (943)
462 cd02023 UMPK Uridine monophosp 97.3 0.00013 2.9E-09 68.9 2.5 34 449-484 1-34 (198)
463 PRK00635 excinuclease ABC subu 97.3 0.00023 5.1E-09 85.9 4.7 39 435-473 609-656 (1809)
464 cd04159 Arl10_like Arl10-like 97.3 0.00023 4.9E-09 63.5 3.4 37 450-486 2-52 (159)
465 PLN03046 D-glycerate 3-kinase; 97.2 0.00025 5.4E-09 73.6 3.9 39 448-486 213-254 (460)
466 TIGR03263 guanyl_kin guanylate 97.2 0.00024 5.3E-09 65.9 3.4 26 447-472 1-26 (180)
467 PRK14722 flhF flagellar biosyn 97.2 0.00016 3.5E-09 74.8 2.3 40 435-474 125-164 (374)
468 cd02026 PRK Phosphoribulokinas 97.2 0.00026 5.6E-09 70.6 3.4 32 449-480 1-32 (273)
469 PTZ00132 GTP-binding nuclear p 97.2 0.00051 1.1E-08 65.7 5.2 38 449-486 11-66 (215)
470 cd04104 p47_IIGP_like p47 (47- 97.2 0.00028 6.1E-09 66.8 3.3 33 450-482 4-36 (197)
471 PRK10463 hydrogenase nickel in 97.2 0.00038 8.3E-09 69.4 4.3 41 444-484 101-141 (290)
472 PLN02165 adenylate isopentenyl 97.2 0.00034 7.4E-09 71.0 3.8 42 446-487 42-87 (334)
473 PF03193 DUF258: Protein of un 97.1 0.0004 8.6E-09 63.3 3.6 35 446-480 34-68 (161)
474 PF13476 AAA_23: AAA domain; P 97.1 0.00035 7.7E-09 65.4 3.2 35 436-471 9-43 (202)
475 PRK08533 flagellar accessory p 97.1 0.0003 6.4E-09 68.4 2.7 41 444-484 21-62 (230)
476 cd03286 ABC_MSH6_euk MutS6 hom 97.1 0.00055 1.2E-08 65.9 4.4 36 435-470 18-53 (218)
477 TIGR01291 nodJ ABC-2 type tran 97.0 0.23 5E-06 48.9 22.7 136 136-278 81-217 (253)
478 TIGR00017 cmk cytidylate kinas 97.0 0.00033 7.1E-09 67.4 2.2 55 449-503 4-69 (217)
479 PLN02318 phosphoribulokinase/u 97.0 0.00063 1.4E-08 73.6 4.3 36 448-484 66-101 (656)
480 PRK00889 adenylylsulfate kinas 97.0 0.00044 9.6E-09 64.0 2.8 41 445-485 2-43 (175)
481 TIGR00750 lao LAO/AO transport 97.0 0.00028 6.1E-09 71.4 1.5 50 435-484 22-71 (300)
482 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00036 7.7E-09 65.0 1.8 35 447-481 3-40 (188)
483 PRK06731 flhF flagellar biosyn 96.9 0.00035 7.6E-09 69.3 1.8 49 436-484 57-115 (270)
484 cd01876 YihA_EngB The YihA (En 96.9 0.0005 1.1E-08 61.9 2.5 28 450-477 2-31 (170)
485 KOG0063 RNAse L inhibitor, ABC 96.9 0.0011 2.4E-08 68.2 5.0 42 435-476 350-396 (592)
486 PRK05480 uridine/cytidine kina 96.9 0.00064 1.4E-08 64.9 3.1 28 445-472 4-31 (209)
487 cd01888 eIF2_gamma eIF2-gamma 96.9 0.0009 1.9E-08 63.6 4.1 31 449-479 2-33 (203)
488 PRK13477 bifunctional pantoate 96.9 0.001 2.3E-08 71.5 4.7 45 435-480 273-320 (512)
489 PRK08927 fliI flagellum-specif 96.9 0.001 2.2E-08 70.2 4.5 40 436-475 147-186 (442)
490 cd01128 rho_factor Transcripti 96.8 0.0012 2.5E-08 64.9 4.4 42 436-478 6-47 (249)
491 PTZ00035 Rad51 protein; Provis 96.8 0.00057 1.2E-08 70.1 2.2 43 443-485 114-163 (337)
492 smart00382 AAA ATPases associa 96.8 0.0019 4E-08 55.8 4.8 40 446-485 1-41 (148)
493 TIGR01069 mutS2 MutS2 family p 96.8 0.00062 1.3E-08 77.2 2.1 38 439-476 313-352 (771)
494 PRK07429 phosphoribulokinase; 96.8 0.0013 2.7E-08 67.3 4.0 52 449-504 10-62 (327)
495 TIGR01248 drrC daunorubicin re 96.7 0.14 3E-06 46.3 17.0 136 135-277 10-148 (152)
496 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0011 2.4E-08 63.6 3.3 33 436-468 18-50 (213)
497 PRK15494 era GTPase Era; Provi 96.7 0.0012 2.6E-08 68.0 3.6 52 406-471 18-76 (339)
498 PRK13851 type IV secretion sys 96.7 0.0015 3.2E-08 67.1 4.1 41 442-482 157-197 (344)
499 TIGR03518 ABC_perm_GldF glidin 96.7 0.09 1.9E-06 51.4 16.1 100 133-233 69-174 (240)
500 cd01131 PilT Pilus retraction 96.6 0.0017 3.8E-08 61.5 3.4 37 449-485 3-40 (198)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-70 Score=644.35 Aligned_cols=469 Identities=23% Similarity=0.372 Sum_probs=361.1
Q ss_pred CCCCCCeeecCCHHHHHHHHH--cCCCccceEEEEeCCC------CCeeEEEEEEccccc--CC--------CCC----C
Q 010435 8 AIPSSKVMSFRTAAEVDDWLY--SNPMRCPGALHFVDRN------ATTISYGIQTNSTPI--EM--------RGR----Y 65 (510)
Q Consensus 8 ~~~~~~~~~f~s~~~l~~~~~--~~~~~~~~av~F~~~~------~~~~~Y~i~~n~~~~--~~--------~~~----~ 65 (510)
-+..|++++++||++|++... .+.+.++|||+|++.. |.+++|+||+|.+.. .. .|+ .
T Consensus 519 c~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~ 598 (2272)
T TIGR01257 519 CLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPV 598 (2272)
T ss_pred HeeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCcc
Confidence 456799999999999999753 3445689999997642 367999999998732 11 111 1
Q ss_pred CCCccc--hhhHHHHHHHHHHHHHHhCCCccceeeeeeccCCCchhHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010435 66 EDPTFK--FQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIF---SAVARIGPTFFLAVAMFGFVFQISSLVTE 140 (510)
Q Consensus 66 ~~~~~~--~~~~lQ~~id~ai~~~~~~~~~~~~~v~~~~~p~p~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~iV~E 140 (510)
.+|.|+ .|+++|++||++|++..++.. ....+..|+||+|++... ..+..++|+|+++++++++..+++.+|.|
T Consensus 599 ~~~~Y~~~GFl~lQ~ai~~aii~~~~~~~-~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~E 677 (2272)
T TIGR01257 599 EDFRYIWGGFAYLQDMVEQGITRSQMQAE-PPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLE 677 (2272)
T ss_pred ccccHHHhhHHHHHHHHHHHHHHhhcCCC-cccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234454 589999999999999876532 345688999999998643 34567889999999999999999999999
Q ss_pred HHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010435 141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFI 220 (510)
Q Consensus 141 Ke~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~~S~fF 220 (510)
||+|+||.|+||||++++||+|||+..++..++++++++++.. ...+|..+++.++|+++++|++++|+|||++|+||
T Consensus 678 KE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fF 755 (2272)
T TIGR01257 678 KELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFF 755 (2272)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988888766655432 34568889999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCccccccCCCcCCCC
Q 010435 221 SKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300 (510)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~g~~w~~~~~~~~~ 300 (510)
+|+++|+.++.+++++.+++..+. +.+.+..+...++++|++||.+|+.|+..++.++ .++.|++|+++..++..
T Consensus 756 ska~~A~~~~~li~f~~~lp~~~~---~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e--~~~~G~~w~n~~~~~~~ 830 (2272)
T TIGR01257 756 SKASLAAACSGVIYFTLYLPHILC---FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFE--EQGLGLQWSNIGNSPLE 830 (2272)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH---hhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHh--hhCCCcccccccccccC
Confidence 999999999988887766554321 1223344556788889999999999999999864 34778999998765543
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcceeecccccCcCCCCCCCcccCccccccCCCCCCCCCCC
Q 010435 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITP 380 (510)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (510)
++ .++++..+.||++|+++|++|+||+|+|+||+||++|||+|+++|+||+++.+....... .....+.. ....
T Consensus 831 ~d--~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~---~~~~~~~~-~~~~ 904 (2272)
T TIGR01257 831 GD--EFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREER---ALEKTEPL-TEEM 904 (2272)
T ss_pred CC--CccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCccccccccc---cccccccc-cccc
Confidence 32 367888889999999999999999999999999999999999999999764311000000 00000000 0000
Q ss_pred CChhhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCch
Q 010435 381 DDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGK 460 (510)
Q Consensus 381 ~d~~v~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGK 460 (510)
+|.+. ++.......++++.+....++++||+|.|+++ .+.||+|+||++++||+++|+|||||||
T Consensus 905 ~~~~~--~~~~~~~~~E~~~~~~~~~L~I~nLsK~y~~~-------------~k~aL~~lsl~I~~Gei~aLLG~NGAGK 969 (2272)
T TIGR01257 905 EDPEH--PEGINDSFFERELPGLVPGVCVKNLVKIFEPS-------------GRPAVDRLNITFYENQITAFLGHNGAGK 969 (2272)
T ss_pred ccccc--cccccccccccccCCCCceEEEEeEEEEecCC-------------CceEEEeeEEEEcCCcEEEEECCCCChH
Confidence 01000 00000000111222335689999999999532 1269999999999999999999999999
Q ss_pred hHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 461 TTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 461 sTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|||+++|+|+.+|++|+|+++|+++. .+.+++|+.+|||||++.|
T Consensus 970 STLLkiLaGLl~PtsG~I~i~G~dI~--~~~~~~r~~IG~~pQ~~~L 1014 (2272)
T TIGR01257 970 TTTLSILTGLLPPTSGTVLVGGKDIE--TNLDAVRQSLGMCPQHNIL 1014 (2272)
T ss_pred HHHHHHHhcCCCCCceEEEECCEECc--chHHHHhhcEEEEecCCcC
Confidence 99999999999999999999999994 3567789999999999865
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.6e-44 Score=425.06 Aligned_cols=381 Identities=21% Similarity=0.321 Sum_probs=264.7
Q ss_pred hhhHHH-HHHHHHHHHHHhCCC----ccceeeeeeccCCCchhHHH------HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010435 72 FQIPLQ-LAAEREIARSLVGDP----NFSWVVGLKEFAHPPGEIFS------AVARIGPTFFLAVAMFGFVFQISSLVTE 140 (510)
Q Consensus 72 ~~~~lQ-~~id~ai~~~~~~~~----~~~~~v~~~~~p~p~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~iV~E 140 (510)
+.+|+- +.+++||++...++. +..+.+.++++|.+..+... ....+..+++++...+....++..+|+|
T Consensus 1625 Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~E 1704 (2272)
T TIGR01257 1625 HALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQE 1704 (2272)
T ss_pred cHHHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehH
Confidence 345544 667899999865422 35677888888876433111 1111222233222333344555668999
Q ss_pred HHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-CChHHHHHHHHHHHHHHHHHHHHHHHh
Q 010435 141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN-NSFAVLFLLFFLFELNMTGFAFMFSAF 219 (510)
Q Consensus 141 Ke~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~-~~~~~l~ll~~l~~~s~i~~s~~~S~f 219 (510)
|++|+|++|.++|++..+||+|+|+||++++++++++++++..+++...|.. .+++.+++++++||+|.|+++|++|++
T Consensus 1705 R~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~Sfl 1784 (2272)
T TIGR01257 1705 RVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFL 1784 (2272)
T ss_pred HhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998888888888766654 577788899999999999999999999
Q ss_pred cCchhHHHHHHHHH-HHHHHHHHHHHhh-cC-ccC---cccchhhhhhheecChHHHHHHHHHHHHhcCCCCCccccccC
Q 010435 220 ISKSSSSTTIGFSV-FIVGFLTQLVTAF-GF-PYS---DQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSR 293 (510)
Q Consensus 220 F~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~g~~w~~ 293 (510)
|+++.+|.....++ +++|++..++..+ .. ... ...+..+++++.++|+++++.|+..++......... -....
T Consensus 1785 F~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~-~~~~~ 1863 (2272)
T TIGR01257 1785 FDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVY-AQFGE 1863 (2272)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHH-Hhhcc
Confidence 99999997654433 4444433322211 11 000 112356788899999999999999887643210000 00000
Q ss_pred CCcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcceeecccccCcCCCCCCCcccCccccccCCCC
Q 010435 294 RAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVP 373 (510)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 373 (510)
.....+...+ ..+..+++|++++++|++|.+++|+-. + . +-|....
T Consensus 1864 ~~~~~~~~~~---~~g~~ll~m~~~~iv~flLl~~ie~~~-----------~-~--~~~~~~~----------------- 1909 (2272)
T TIGR01257 1864 EHSANPFQWD---LIGKNLVAMAVEGVVYFLLTLLIQHHF-----------F-L--SRWIAEP----------------- 1909 (2272)
T ss_pred cccCCccchh---hccHHHHHHHHHHHHHHHHHHHHHhhh-----------h-h--hhhcccc-----------------
Confidence 0000000110 123346778889999999999998531 0 0 0111110
Q ss_pred CCCCCCCCChhhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEe
Q 010435 374 PMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLL 453 (510)
Q Consensus 374 ~~~~~~~~d~~v~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~ll 453 (510)
..+...+||+||.+|+.++.... ..+..++++||+|.|+++ .+.||+|+||+|++|||+||+
T Consensus 1910 ~~~~~~~eD~DV~~Er~rV~~~~-----~~~~~L~v~nLsK~Y~~~-------------~~~aL~~ISf~I~~GEi~gLL 1971 (2272)
T TIGR01257 1910 AKEPIFDEDDDVAEERQRIISGG-----NKTDILRLNELTKVYSGT-------------SSPAVDRLCVGVRPGECFGLL 1971 (2272)
T ss_pred CcCcCCCchhHHHHHHHHHhccC-----CCCceEEEEEEEEEECCC-------------CceEEEeeEEEEcCCcEEEEE
Confidence 00112358999999998775421 124579999999999642 126999999999999999999
Q ss_pred cCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 454 GPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 454 G~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+||||||||++||+|+.+|++|+|+++|+++. .+.++.|+.+|||||++.|
T Consensus 1972 G~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~--~~~~~~r~~IGy~pQ~~~L 2023 (2272)
T TIGR01257 1972 GVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL--TNISDVHQNMGYCPQFDAI 2023 (2272)
T ss_pred CCCCCcHHHHHHHHhCCCCCCccEEEECCEECc--chHHHHhhhEEEEeccccC
Confidence 999999999999999999999999999999984 3456778999999999865
No 3
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.9e-39 Score=365.82 Aligned_cols=379 Identities=25% Similarity=0.306 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHHhCCCccceeeeeeccCCCchhH-HHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhCC
Q 010435 77 QLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEI-FSA-VARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGL 154 (510)
Q Consensus 77 Q~~id~ai~~~~~~~~~~~~~v~~~~~p~p~~~~-~~~-~~~~~~~f~~~~~~~~~~~~~~~iV~EKe~~lke~m~~mGl 154 (510)
....++++.+...+.. +.+.++++|.+.... .+. ...+.+.++.....+.+...+...|.||+.|+|++|+++|+
T Consensus 260 ~~~~~n~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~~i~G~ 336 (885)
T KOG0059|consen 260 LGLGSNALRRALNLSG---ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQLIAGL 336 (885)
T ss_pred cchHHHHHHHhhcccc---ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 4455677777654322 445555666554332 233 34555666666666677777888999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010435 155 YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVF 234 (510)
Q Consensus 155 ~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~~S~fF~~~~~a~~~~~~~~ 234 (510)
++++||+++++||++.+++.++++.+++.+++ ++..++..++++++++|+++.++++|++|++|+++..+.+...+..
T Consensus 337 ~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~ 414 (885)
T KOG0059|consen 337 SPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYN 414 (885)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHH
Confidence 99999999999999999999988888887777 5666788899999999999999999999999999999886655543
Q ss_pred HHHHHHHHHHhhcCccCcccchhhhhhheecChHH-------HHHHHHHHHHhcCCCCCccccccCCCcCCCCCCccc--
Q 010435 235 IVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNL-------LAEALQLLSDATETPQDIGISWSRRAECAPNDTECV-- 305 (510)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~-------~~~~~~~i~~~~~~~~~~g~~w~~~~~~~~~~~~~~-- 305 (510)
+++.+...+....+.+.............+.|++. ++.+....... ...+..|+....+........
T Consensus 415 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 490 (885)
T KOG0059|consen 415 LISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLN----LNDGMSLEVLGNDESFYTLLLEW 490 (885)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc----chhhhhhhhhcccccccchhHHH
Confidence 33322221111111222222222333333445444 44443333322 234556666543210000000
Q ss_pred -c-hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcceeecccccCcCCCCCCCcccCccccccCCCCCCCCCCCCCh
Q 010435 306 -I-TINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDE 383 (510)
Q Consensus 306 -~-~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 383 (510)
. .....+..+....+.+.++... .+..+..+.....+. ..+..+....||.
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~f~~l-------------------~~~~~~~~~~~~~~~--------~~~~~~~~~~e~~ 543 (885)
T KOG0059|consen 491 LLPLIGRRYLALVTEGVKDDLFFLL-------------------IFVPFKRRMRALTQN--------MLKGFEPVEVEKL 543 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhhhhcccccccccc--------ccCCCcCcchhhH
Confidence 0 0000111122222222222222 111221111000000 0011122345677
Q ss_pred hhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHH
Q 010435 384 DVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463 (510)
Q Consensus 384 ~v~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl 463 (510)
||.+|+.++...... .....++.+++|+|.|+++. .||+++|+.|++|||+|++|+|||||||+
T Consensus 544 ~v~~e~~~v~~~~~~--~~~~~~~~~~~L~k~y~~~~--------------~Av~~ls~~V~~gecfgLLG~NGAGKtT~ 607 (885)
T KOG0059|consen 544 DVARERNRVETLLFR--SSYSSALVLNNLSKVYGGKD--------------GAVRGLSFAVPPGECFGLLGVNGAGKTTT 607 (885)
T ss_pred HHHHHHHhhhhhhhc--ccccceEEEcceeeeecchh--------------hhhcceEEEecCCceEEEecCCCCCchhh
Confidence 888876544433221 11236799999999996531 19999999999999999999999999999
Q ss_pred HHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 464 ~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++||+|+.+||+|+++++|+++....+.+++++++|||||+|.|
T Consensus 608 f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l 651 (885)
T KOG0059|consen 608 FKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDAL 651 (885)
T ss_pred HHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhh
Confidence 99999999999999999999997656777899999999999987
No 4
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=5e-21 Score=174.90 Aligned_cols=85 Identities=26% Similarity=0.415 Sum_probs=76.5
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+.+++|.|.|+++ ++|+++||+|++||++||||||||||||++.|++|+.+|++|+|.++|.||
T Consensus 4 ~L~a~~l~K~y~kr---------------~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSYKKR---------------KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhhCCe---------------eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccc
Confidence 57899999999653 699999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
....--++.|..+||.||..
T Consensus 69 T~lPm~~RArlGigYLpQE~ 88 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEA 88 (243)
T ss_pred ccCChHHHhhcCcccccccc
Confidence 75333456788999999975
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=2.8e-20 Score=175.86 Aligned_cols=88 Identities=25% Similarity=0.467 Sum_probs=80.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++. .||+|+||+|++||.++++||+|||||||++||.++++||+|+|+|+|.+++
T Consensus 2 I~~~nvsk~y~~~---------------~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYGNK---------------KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcCCc---------------eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecc
Confidence 6899999999743 6999999999999999999999999999999999999999999999999997
Q ss_pred CcccHHHhhccEEEEccCCCc-cCC
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF-SYL 510 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L-~~~ 510 (510)
+ .+..+.|++|||+-|...| ++|
T Consensus 67 ~-~d~~~LRr~IGYviQqigLFPh~ 90 (309)
T COG1125 67 D-LDPVELRRKIGYVIQQIGLFPHL 90 (309)
T ss_pred c-CCHHHHHHhhhhhhhhcccCCCc
Confidence 4 6788899999999997765 543
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=6e-20 Score=170.26 Aligned_cols=90 Identities=26% Similarity=0.592 Sum_probs=80.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.|+++|++|.|++. .+|+|+||+|++||+++|+||+||||||++++|.|+.+|++|+|.++|.++
T Consensus 2 mi~i~~l~K~fg~~---------------~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSFGDK---------------EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEeCCe---------------EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEec
Confidence 48999999999753 699999999999999999999999999999999999999999999999887
Q ss_pred CCcccHHHhhccEEEEcc-CCCccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQ-VTLFSYL 510 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ-~~~L~~~ 510 (510)
....+..++|+++|+|+| +|..++|
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHl 92 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHL 92 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccc
Confidence 433478899999999999 4555664
No 7
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=1.1e-19 Score=182.39 Aligned_cols=86 Identities=33% Similarity=0.647 Sum_probs=77.7
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+.+++|+|.|+++ +.||+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 4 ~i~~~~l~k~~~~~--------------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYGGD--------------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeCCC--------------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeC
Confidence 57889999999731 1699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .+..++|+++||+||.+.+
T Consensus 70 ~--~~~~~~~~~igy~~~~~~~ 89 (293)
T COG1131 70 V--KEPAKVRRRIGYVPQEPSL 89 (293)
T ss_pred c--cCHHHHHhheEEEccCCCC
Confidence 4 3467889999999998864
No 8
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.79 E-value=1.4e-19 Score=182.75 Aligned_cols=89 Identities=28% Similarity=0.492 Sum_probs=79.7
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...+++++++|.|++. .||+|+||+|++||+++|||||||||||+++||+|+..||+|+|.++|.
T Consensus 3 ~~~l~i~~v~k~yg~~---------------~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~ 67 (352)
T COG3842 3 KPALEIRNVSKSFGDF---------------TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGE 67 (352)
T ss_pred CceEEEEeeeeecCCe---------------eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 3579999999999732 6999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc-cCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF-SYL 510 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L-~~~ 510 (510)
++.+ +..-+|.+|+|+|.-+| +||
T Consensus 68 ~i~~---lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 68 DITD---VPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred ECCC---CChhhcccceeecCcccCCCC
Confidence 9953 44568899999998766 665
No 9
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.79 E-value=4.1e-17 Score=193.79 Aligned_cols=87 Identities=28% Similarity=0.370 Sum_probs=74.8
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc---CCcceEEEc
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIY 481 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i~i~ 481 (510)
..++++||++.|+.+. +.+.+++|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++
T Consensus 758 ~~l~~~nl~~~~~~~~-----------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~ 826 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK-----------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVN 826 (1394)
T ss_pred ceEEEEeeEEEecCCC-----------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEEC
Confidence 3579999999995321 12369999999999999999999999999999999999998 789999999
Q ss_pred CeecCCcccHHHhhccEEEEccCCCc
Q 010435 482 GFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 482 g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|.++. ++.|+.+|||||+|.+
T Consensus 827 G~~~~-----~~~~~~i~yv~Q~~~~ 847 (1394)
T TIGR00956 827 GRPLD-----SSFQRSIGYVQQQDLH 847 (1394)
T ss_pred CEECC-----hhhhcceeeecccccC
Confidence 99873 2468899999998864
No 10
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.79 E-value=3.6e-19 Score=180.10 Aligned_cols=86 Identities=31% Similarity=0.556 Sum_probs=77.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..+++++|+|.|++. .|++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.+
T Consensus 6 ~~i~i~~l~k~~~~~---------------~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYGDK---------------LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEECCe---------------EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe
Confidence 469999999999642 69999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.. ...+.|+++|||||...+
T Consensus 71 ~~~--~~~~~~~~ig~v~q~~~~ 91 (306)
T PRK13537 71 VPS--RARHARQRVGVVPQFDNL 91 (306)
T ss_pred ccc--chHHHHhcEEEEeccCcC
Confidence 853 345678999999998755
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.79 E-value=3.5e-19 Score=172.58 Aligned_cols=85 Identities=29% Similarity=0.540 Sum_probs=78.0
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+..|+++ .+++|+||++++||++||+||||||||||+|+|+|+++|.+|+|+++|.++
T Consensus 2 ~L~~~~ls~~y~~~---------------~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYGGK---------------PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEECCe---------------eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 47899999999743 699999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhccEEEEccCCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
.+ ...+++.+.+||+||...
T Consensus 67 ~~-~~~kelAk~ia~vpQ~~~ 86 (258)
T COG1120 67 AS-LSPKELAKKLAYVPQSPS 86 (258)
T ss_pred hh-cCHHHHhhhEEEeccCCC
Confidence 74 567788899999999753
No 12
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=1.1e-19 Score=170.77 Aligned_cols=82 Identities=33% Similarity=0.563 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
++++++++|.|+.. .||+|+||+|++||++|+||+||||||||++||.|+++||+|+|.++|.++
T Consensus 2 ~L~ie~vtK~Fg~k---------------~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKSFGDK---------------KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhccCce---------------eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch
Confidence 47899999999653 799999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+ ...+.+|||.|-.-.|
T Consensus 67 ~-----~~~~~rIGyLPEERGL 83 (300)
T COG4152 67 S-----QEIKNRIGYLPEERGL 83 (300)
T ss_pred h-----hhhhhhcccChhhhcc
Confidence 3 2568899999986554
No 13
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.1e-19 Score=166.42 Aligned_cols=85 Identities=22% Similarity=0.345 Sum_probs=76.3
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++.+|+|+|+.. +.|++|+||++++||++||||+|||||||+++||++++.||+|.|+|+|.|.
T Consensus 2 l~v~~l~K~y~~~--------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~- 66 (245)
T COG4555 2 LEVTDLTKSYGSK--------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT- 66 (245)
T ss_pred eeeeehhhhccCH--------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccc-
Confidence 6789999999652 3599999999999999999999999999999999999999999999999998
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
..+...+|++||+.+-...|
T Consensus 67 -~~~p~~vrr~IGVl~~e~gl 86 (245)
T COG4555 67 -VRDPSFVRRKIGVLFGERGL 86 (245)
T ss_pred -ccChHHHhhhcceecCCcCh
Confidence 45778999999999855443
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4e-19 Score=172.84 Aligned_cols=92 Identities=25% Similarity=0.444 Sum_probs=80.3
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
|++++++|.|... +++...||+|+||+|++|||+|++|++|||||||++++.++..||+|+|.++|.|+.
T Consensus 2 I~l~~vsK~~~~~----------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT----------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC----------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecc
Confidence 7899999999763 123457999999999999999999999999999999999999999999999999885
Q ss_pred C--cccHHHhhccEEEEccCC-Ccc
Q 010435 487 S--SVSMTNIQKSIGVCPQVT-LFS 508 (510)
Q Consensus 487 ~--~~~~~~~r~~iG~cpQ~~-~L~ 508 (510)
. ..++++.|++||+++||. .|+
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLs 96 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLS 96 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccc
Confidence 3 345788899999999965 444
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=4.3e-19 Score=167.06 Aligned_cols=89 Identities=25% Similarity=0.475 Sum_probs=80.7
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...|++++|+|.|+++ .+++|+||+|++||+++++|++|+||||+++.|.|+.+|++|+|+++|.
T Consensus 6 ~~~I~vr~v~~~fG~~---------------~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~ 70 (263)
T COG1127 6 EPLIEVRGVTKSFGDR---------------VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE 70 (263)
T ss_pred cceEEEeeeeeecCCE---------------EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCc
Confidence 5679999999999754 6999999999999999999999999999999999999999999999999
Q ss_pred ecCC--cccHHHhhccEEEEccCCCc
Q 010435 484 SIRS--SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~--~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. ..+..++|+++|+++|+-+|
T Consensus 71 ~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 71 DIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred chhccCHHHHHHHHhheeEEeecccc
Confidence 9854 23456789999999998876
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.78 E-value=5.7e-19 Score=177.48 Aligned_cols=87 Identities=23% Similarity=0.461 Sum_probs=77.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .||+++||+|++||.++|+||||||||||++||+|+.+||+|+|+|+|.++
T Consensus 3 ~i~l~~v~K~yg~~---------------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFGSF---------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcCCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 58999999999642 299999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhccEEEEccCCCc-cCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF-SYL 510 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L-~~~ 510 (510)
. +.....|++|+|+|.-+| ++|
T Consensus 68 t---~l~P~~R~iamVFQ~yALyPhm 90 (338)
T COG3839 68 T---DLPPEKRGIAMVFQNYALYPHM 90 (338)
T ss_pred C---CCChhHCCEEEEeCCccccCCC
Confidence 5 344567899999998876 554
No 17
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=7.3e-19 Score=165.02 Aligned_cols=89 Identities=22% Similarity=0.433 Sum_probs=79.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++|+-.|++. +||+++||++++|||++|+|+||||||||++.|+|+.+|++|+|.++|.||
T Consensus 3 mL~v~~l~~~YG~~---------------~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~di 67 (237)
T COG0410 3 MLEVENLSAGYGKI---------------QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI 67 (237)
T ss_pred ceeEEeEeecccce---------------eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeec
Confidence 57899999999653 799999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhccEEEEccC-CCccC
Q 010435 486 RSSVSMTNIQKSIGVCPQV-TLFSY 509 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~-~~L~~ 509 (510)
.....-+.+|..|+||||- ++++.
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhh
Confidence 7655567789999999994 35444
No 18
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.77 E-value=8.9e-19 Score=179.35 Aligned_cols=87 Identities=31% Similarity=0.563 Sum_probs=77.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++||+|.|++. .||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~~i~i~nl~k~y~~~---------------~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~ 103 (340)
T PRK13536 39 TVAIDLAGVSKSYGDK---------------AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV 103 (340)
T ss_pred ceeEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCE
Confidence 3469999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+ ...+.++.+|||||...+
T Consensus 104 ~~~~--~~~~~~~~ig~v~q~~~~ 125 (340)
T PRK13536 104 PVPA--RARLARARIGVVPQFDNL 125 (340)
T ss_pred ECCc--chHHHhccEEEEeCCccC
Confidence 9853 335678899999998765
No 19
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=4.2e-19 Score=167.86 Aligned_cols=85 Identities=29% Similarity=0.464 Sum_probs=76.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++|+|+|++- +||+|+||+|++||++||+|||||||||++|+|||.++||+|+|.++|.||
T Consensus 4 lL~v~~l~k~FGGl---------------~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~i 68 (250)
T COG0411 4 LLEVRGLSKRFGGL---------------TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68 (250)
T ss_pred eeeeccceeecCCE---------------EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCccc
Confidence 47899999999763 699999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.....-+..|..|+--+|..
T Consensus 69 t~l~p~~iar~Gi~RTFQ~~ 88 (250)
T COG0411 69 TGLPPHRIARLGIARTFQIT 88 (250)
T ss_pred CCCCHHHHHhccceeecccc
Confidence 76444556677888889965
No 20
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.76 E-value=9e-19 Score=179.75 Aligned_cols=88 Identities=31% Similarity=0.510 Sum_probs=80.7
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..+++++++|.|++ ++|.++|||+|++|||.+|||.||||||||++||.|+++||+|+|+++|+.
T Consensus 3 ~~l~~~~itK~f~~---------------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~ 67 (501)
T COG3845 3 PALEMRGITKRFPG---------------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKE 67 (501)
T ss_pred ceEEEeccEEEcCC---------------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEE
Confidence 47899999999974 279999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++-....+.+|..||+|.||-.|
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~L 90 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFML 90 (501)
T ss_pred eccCCHHHHHHcCCcEEeecccc
Confidence 86555677889999999999866
No 21
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.3e-18 Score=167.86 Aligned_cols=84 Identities=24% Similarity=0.512 Sum_probs=73.5
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++ +||+|+||++++||+++|+||||||||||+|.|.|+++|++|+|.+.|.+
T Consensus 3 ~~i~v~nl~v~y~~~---------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~ 67 (254)
T COG1121 3 PMIEVENLTVSYGNR---------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKP 67 (254)
T ss_pred cEEEEeeeEEEECCE---------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccc
Confidence 468999999999642 49999999999999999999999999999999999999999999999988
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. +-+.+|||+||..-+
T Consensus 68 ~~~~----~~~~~IgYVPQ~~~~ 86 (254)
T COG1121 68 VRKR----RKRLRIGYVPQKSSV 86 (254)
T ss_pred cccc----ccCCeEEEcCccccc
Confidence 7421 125789999996543
No 22
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.6e-18 Score=162.85 Aligned_cols=88 Identities=28% Similarity=0.581 Sum_probs=79.0
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|+|+++ +.|+++|||+|++||.++|+|++|||||||+++|.|+.+||+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp~~--------------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYPGG--------------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecCCC--------------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccch
Confidence 68999999999754 2699999999999999999999999999999999999999999999999888
Q ss_pred CC--cccHHHhhccEEEEccCCCc
Q 010435 486 RS--SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~--~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ..+++++|+++|+++|...|
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCc
Confidence 53 34688899999999996544
No 23
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.75 E-value=4.2e-18 Score=172.09 Aligned_cols=84 Identities=27% Similarity=0.518 Sum_probs=75.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~---------------~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYGTQ---------------NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEECCE---------------EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 7899999999532 5999999999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ...++|+.+|||||...+
T Consensus 68 ~--~~~~~~~~ig~~~q~~~l 86 (301)
T TIGR03522 68 Q--NPKEVQRNIGYLPEHNPL 86 (301)
T ss_pred c--ChHHHHhceEEecCCCCC
Confidence 3 345678899999998754
No 24
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=6e-18 Score=160.92 Aligned_cols=93 Identities=25% Similarity=0.472 Sum_probs=77.7
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|.... ....|++++||+|++||.++|+||+|||||||+++|.|+..||+|++.++|.|+.
T Consensus 2 i~~~~v~k~y~~~~-----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLGG-----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccCC-----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcC
Confidence 56899999996532 1257999999999999999999999999999999999999999999999999986
Q ss_pred Ccc--cHHHh-hccEEEEcc-CCCccCC
Q 010435 487 SSV--SMTNI-QKSIGVCPQ-VTLFSYL 510 (510)
Q Consensus 487 ~~~--~~~~~-r~~iG~cpQ-~~~L~~~ 510 (510)
... +..+. |+++|+++| ++.|++|
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~l 98 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDL 98 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence 422 23344 567999999 5566664
No 25
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.74 E-value=8.1e-18 Score=170.18 Aligned_cols=86 Identities=33% Similarity=0.521 Sum_probs=76.2
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++|.|++. .+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~ 67 (303)
T TIGR01288 3 VAIDLVGVSKSYGDK---------------VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP 67 (303)
T ss_pred cEEEEEeEEEEeCCe---------------EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 368999999999642 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.. ...+.|+.+||+||+..+
T Consensus 68 ~~~--~~~~~~~~i~~v~q~~~~ 88 (303)
T TIGR01288 68 VPS--RARLARVAIGVVPQFDNL 88 (303)
T ss_pred Ccc--cHHHHhhcEEEEeccccC
Confidence 842 335668899999998644
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.73 E-value=2.8e-18 Score=155.89 Aligned_cols=85 Identities=28% Similarity=0.516 Sum_probs=76.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
|++++++|.|++.+ .|++|+||.|++||..-|.||+||||||++|+|.+...||+|+|.++|+|+.
T Consensus 2 I~f~~V~k~Y~~g~--------------~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPGGR--------------EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCCCc--------------hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc
Confidence 78899999997652 5999999999999999999999999999999999999999999999999985
Q ss_pred C--cccHHHhhccEEEEccCC
Q 010435 487 S--SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~--~~~~~~~r~~iG~cpQ~~ 505 (510)
. ..++--.|++||+|+|+.
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~ 88 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDF 88 (223)
T ss_pred cccccccchhhheeeeEeeec
Confidence 3 345667899999999965
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.73 E-value=1.1e-17 Score=171.05 Aligned_cols=90 Identities=21% Similarity=0.438 Sum_probs=76.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++.. ..+.+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~~-----------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQGT-----------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCCC-----------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 78999999996321 1236999999999999999999999999999999999999999999999999985
Q ss_pred Cc--ccHHHhhccEEEEccCCCc
Q 010435 487 SS--VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~--~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+....|+.+||+||+..|
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l 93 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNL 93 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccc
Confidence 32 2234568899999998654
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.1e-17 Score=162.99 Aligned_cols=86 Identities=26% Similarity=0.579 Sum_probs=73.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFGGR---------------TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4688999999532 5999999999999999999999999999999999999999999999999884
Q ss_pred Ccc--cHHHhhccEEEEccCCCc
Q 010435 487 SSV--SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~--~~~~~r~~iG~cpQ~~~L 507 (510)
... +....|+.+||+||.+.+
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~ 88 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGAL 88 (235)
T ss_pred ccChhhHHHHhcceEEEccCccc
Confidence 311 134678899999998643
No 29
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=9.3e-18 Score=159.97 Aligned_cols=81 Identities=26% Similarity=0.527 Sum_probs=73.7
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+.+++++|.|++. .|++|+||+|.+||+++|+||+||||||++++|+|+.+|++|+|.++|..+
T Consensus 3 ~l~i~~v~~~f~~~---------------~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFGGV---------------EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeCce---------------EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence 58899999999652 699999999999999999999999999999999999999999999999887
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .....+||++|++.|
T Consensus 68 ~------~p~~~~~~vFQ~~~L 83 (248)
T COG1116 68 T------GPGPDIGYVFQEDAL 83 (248)
T ss_pred C------CCCCCEEEEeccCcc
Confidence 3 336789999998865
No 30
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.9e-17 Score=159.73 Aligned_cols=84 Identities=33% Similarity=0.559 Sum_probs=73.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYGDF---------------EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEECCE---------------EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecC
Confidence 4689999999542 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ...+.++.+|||||...+
T Consensus 66 ~--~~~~~~~~i~~~~q~~~~ 84 (220)
T cd03265 66 R--EPREVRRRIGIVFQDLSV 84 (220)
T ss_pred c--ChHHHhhcEEEecCCccc
Confidence 2 234667889999998643
No 31
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.71 E-value=2.4e-17 Score=171.80 Aligned_cols=86 Identities=28% Similarity=0.486 Sum_probs=77.4
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .+++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 3 ~L~~~nls~~y~~~---------------~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFGDT---------------TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 58899999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+ ...++.++++||+||...+
T Consensus 68 ~~-~~~~~~~~~ig~v~q~~~l 88 (402)
T PRK09536 68 EA-LSARAASRRVASVPQDTSL 88 (402)
T ss_pred Cc-CCHHHHhcceEEEccCCCC
Confidence 53 3456778899999998765
No 32
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.71 E-value=2.3e-17 Score=158.61 Aligned_cols=88 Identities=25% Similarity=0.422 Sum_probs=74.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|++.. +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPGGH-------------QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecCCC-------------eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh
Confidence 67899999995421 15999999999999999999999999999999999999999999999999874
Q ss_pred Cc--ccHHHhhccEEEEccCCCc
Q 010435 487 SS--VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~--~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+....|+.+||+||+..+
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~ 91 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRL 91 (216)
T ss_pred hcChhHHHHHHHhceEEecCccc
Confidence 21 1233467899999998643
No 33
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.71 E-value=2.5e-17 Score=159.02 Aligned_cols=86 Identities=23% Similarity=0.420 Sum_probs=72.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++. ++++++||++++||++||+|||||||||++++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYGKS---------------QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecCCe---------------eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence 4688999999542 5999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.....+..++.+||+||...+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~ 86 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRI 86 (222)
T ss_pred CCCHHHHHhcCeEEecccccc
Confidence 322222346789999998643
No 34
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.71 E-value=2.2e-17 Score=160.57 Aligned_cols=86 Identities=28% Similarity=0.462 Sum_probs=72.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYGKR---------------KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeCCE---------------EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 4688999999542 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.....+..++.+||+||.+.+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~ 86 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASI 86 (232)
T ss_pred cCCHhHHHhccEEEecCCccc
Confidence 321122245689999998643
No 35
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.71 E-value=2.5e-17 Score=158.85 Aligned_cols=86 Identities=44% Similarity=0.672 Sum_probs=74.1
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|++. ++++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 1 l~~~~l~~~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKKG-------------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCCC-------------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 4688999999642 125999999999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ...+.++.+||+||...+
T Consensus 68 ~--~~~~~~~~i~~v~q~~~~ 86 (220)
T cd03263 68 T--DRKAARQSLGYCPQFDAL 86 (220)
T ss_pred c--chHHHhhhEEEecCcCCc
Confidence 2 235667889999997644
No 36
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.71 E-value=3.3e-17 Score=150.69 Aligned_cols=82 Identities=28% Similarity=0.530 Sum_probs=71.3
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|++. ++++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFGGV---------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC
Confidence 4688999999642 5999999999999999999999999999999999999999999999999985
Q ss_pred CcccHHHhhccEEEEcc
Q 010435 487 SSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ 503 (510)
.....+..++.+||+||
T Consensus 66 ~~~~~~~~~~~i~~~~q 82 (163)
T cd03216 66 FASPRDARRAGIAMVYQ 82 (163)
T ss_pred cCCHHHHHhcCeEEEEe
Confidence 32222445778999998
No 37
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.71 E-value=2.9e-17 Score=159.52 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=73.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYGQS---------------HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeCCe---------------EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 4689999999642 5999999999999999999999999999999999999999999999999985
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.....+..++.+||+||+..+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~ 86 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREI 86 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcc
Confidence 322223346789999998754
No 38
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.71 E-value=3.4e-17 Score=157.66 Aligned_cols=88 Identities=28% Similarity=0.486 Sum_probs=75.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++.. +..++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~-----------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDVK-----------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCCC-----------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcc
Confidence 67899999996431 1125999999999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ...+.|+.+|||||+..+
T Consensus 71 ~--~~~~~~~~i~~~~q~~~~ 89 (218)
T cd03266 71 K--EPAEARRRLGFVSDSTGL 89 (218)
T ss_pred c--CHHHHHhhEEEecCCccc
Confidence 2 345678899999998744
No 39
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.1e-17 Score=155.40 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=76.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc---CCcceEEEcC
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG 482 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i~i~g 482 (510)
.+.++|++|.|+..+ +...+++++||++++||+++|+|+|||||||++++|+|+++ |++|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g 71 (202)
T cd03233 3 TLSWRNISFTTGKGR-----------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71 (202)
T ss_pred eEEEEccEEEeccCC-----------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC
Confidence 478999999997641 23369999999999999999999999999999999999999 8999999999
Q ss_pred eecCCcccHHHhhccEEEEccCCCc
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++.. .....++.+|||||.+.+
T Consensus 72 ~~~~~--~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 72 IPYKE--FAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred EECcc--chhhhcceEEEEeccccc
Confidence 99843 224567889999997643
No 40
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.7e-17 Score=159.89 Aligned_cols=86 Identities=29% Similarity=0.492 Sum_probs=74.7
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYKGR---------------RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeCCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 47899999999532 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
......+..|+.+|||||.+.
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~ 88 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEAS 88 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCc
Confidence 532222345788999999864
No 41
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=3.8e-17 Score=155.31 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=74.4
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++. .+++++||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYHDQ---------------PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeCCe---------------eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccc
Confidence 6889999999542 5999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .....|+++||+||...+
T Consensus 67 ~--~~~~~~~~i~~~~q~~~~ 85 (200)
T PRK13540 67 K--DLCTYQKQLCFVGHRSGI 85 (200)
T ss_pred c--CHHHHHhheEEecccccc
Confidence 2 345668899999997544
No 42
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.70 E-value=4.5e-17 Score=157.75 Aligned_cols=88 Identities=16% Similarity=0.311 Sum_probs=76.7
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus 5 ~~~i~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 69 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA---------------KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69 (225)
T ss_pred CceEEEeccEEeeCCc---------------eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE
Confidence 3469999999999542 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. .+..+.++.+||+||...+
T Consensus 70 ~~~~-~~~~~~~~~i~~~~q~~~l 92 (225)
T PRK10247 70 DIST-LKPEIYRQQVSYCAQTPTL 92 (225)
T ss_pred EcCc-CCHHHHHhccEEEeccccc
Confidence 8753 2345567899999998643
No 43
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.70 E-value=2.8e-17 Score=157.47 Aligned_cols=83 Identities=25% Similarity=0.529 Sum_probs=72.4
Q ss_pred EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (510)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~ 488 (510)
+++++|.|++.. +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~~~l~~~~~~~~-------------~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~- 67 (211)
T cd03225 2 LKNLSFSYPDGA-------------RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK- 67 (211)
T ss_pred ceeEEEecCCCC-------------eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccc-
Confidence 678999996421 259999999999999999999999999999999999999999999999998853
Q ss_pred ccHHHhhccEEEEccCC
Q 010435 489 VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 489 ~~~~~~r~~iG~cpQ~~ 505 (510)
.+....++.+||+||..
T Consensus 68 ~~~~~~~~~i~~~~q~~ 84 (211)
T cd03225 68 LSLKELRRKVGLVFQNP 84 (211)
T ss_pred CCHHHHHhhceEEecCh
Confidence 33456788999999986
No 44
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.3e-17 Score=158.34 Aligned_cols=82 Identities=28% Similarity=0.532 Sum_probs=71.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTYGSV---------------RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEeCCe---------------eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcC
Confidence 3688999999542 5999999999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhccEEEEccCCC
Q 010435 487 SSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~ 506 (510)
. ....++.+||+||...
T Consensus 66 ~---~~~~~~~i~~v~q~~~ 82 (213)
T cd03259 66 G---VPPERRNIGMVFQDYA 82 (213)
T ss_pred c---CchhhccEEEEcCchh
Confidence 2 2234678999999753
No 45
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=4.9e-17 Score=151.68 Aligned_cols=86 Identities=23% Similarity=0.505 Sum_probs=73.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|+++ .+++++||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~---------------~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYGQK---------------TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEECCe---------------EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4688999999542 5999999999999999999999999999999999999999999999999884
Q ss_pred Ccc-cHHHhhccEEEEccCCCc
Q 010435 487 SSV-SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~-~~~~~r~~iG~cpQ~~~L 507 (510)
+.. .....++.++|+||.+.+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~ 87 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFAL 87 (178)
T ss_pred ccchhHHHHhhcEEEEecCCcc
Confidence 311 134668899999998643
No 46
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=4e-17 Score=167.78 Aligned_cols=86 Identities=27% Similarity=0.410 Sum_probs=76.1
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...+++++++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 4 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~ 68 (351)
T PRK11432 4 KNFVVLKNITKRFGSN---------------TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE 68 (351)
T ss_pred CcEEEEEeEEEEECCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCE
Confidence 3469999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+ ....++++|||||+..|
T Consensus 69 ~i~~---~~~~~r~ig~vfQ~~~l 89 (351)
T PRK11432 69 DVTH---RSIQQRDICMVFQSYAL 89 (351)
T ss_pred ECCC---CCHHHCCEEEEeCCccc
Confidence 9853 22446899999998765
No 47
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=4.5e-17 Score=155.32 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=74.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERDER---------------ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEECCE---------------EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence 6889999999542 5999999999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .....++.+|+++|.+.+
T Consensus 67 ~--~~~~~~~~~~~~~~~~~~ 85 (204)
T PRK13538 67 R--QRDEYHQDLLYLGHQPGI 85 (204)
T ss_pred c--chHHhhhheEEeCCcccc
Confidence 2 234567889999997644
No 48
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.70 E-value=2.9e-17 Score=156.65 Aligned_cols=80 Identities=28% Similarity=0.427 Sum_probs=70.4
Q ss_pred EEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (510)
Q Consensus 408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~ 487 (510)
+++|++|.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 66 (205)
T cd03226 1 RIENISFSYKKG--------------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA 66 (205)
T ss_pred CcccEEEEeCCc--------------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh
Confidence 367899999541 159999999999999999999999999999999999999999999999998731
Q ss_pred cccHHHhhccEEEEccCC
Q 010435 488 SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 488 ~~~~~~~r~~iG~cpQ~~ 505 (510)
...++.+||+||+.
T Consensus 67 ----~~~~~~i~~~~q~~ 80 (205)
T cd03226 67 ----KERRKSIGYVMQDV 80 (205)
T ss_pred ----HHhhcceEEEecCh
Confidence 35677899999985
No 49
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.70 E-value=3.8e-17 Score=156.21 Aligned_cols=83 Identities=27% Similarity=0.470 Sum_probs=73.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYGKK---------------RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEECCe---------------EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCccc
Confidence 4689999999532 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ..+.++.+|||||++.+
T Consensus 66 ~---~~~~~~~i~~~~q~~~~ 83 (208)
T cd03268 66 K---NIEALRRIGALIEAPGF 83 (208)
T ss_pred c---hHHHHhhEEEecCCCcc
Confidence 2 24567889999998643
No 50
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.70 E-value=3.7e-17 Score=159.38 Aligned_cols=85 Identities=31% Similarity=0.503 Sum_probs=72.3
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|++. .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRFGGL---------------VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEECCE---------------EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECC
Confidence 3578999999532 5999999999999999999999999999999999999999999999999985
Q ss_pred CcccHHH-hhccEEEEccCCCc
Q 010435 487 SSVSMTN-IQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~-~r~~iG~cpQ~~~L 507 (510)
. .+..+ .++.+||+||+..+
T Consensus 66 ~-~~~~~~~~~~i~~v~q~~~l 86 (236)
T cd03219 66 G-LPPHEIARLGIGRTFQIPRL 86 (236)
T ss_pred C-CCHHHHHhcCEEEEeccccc
Confidence 3 22223 35679999998643
No 51
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.70 E-value=4.3e-17 Score=154.70 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=73.1
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .+++++||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSRGER---------------MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEECCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc
Confidence 4688999999542 5999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ..+.++.+||+||.+.+
T Consensus 66 ~~--~~~~~~~i~~~~q~~~~ 84 (198)
T TIGR01189 66 EQ--RDEPHRNILYLGHLPGL 84 (198)
T ss_pred cc--hHHhhhheEEeccCccc
Confidence 32 23557889999997644
No 52
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6e-17 Score=161.11 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=77.2
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
.+.+++++++|.|++.. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.
T Consensus 5 ~~~l~i~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 71 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA-------------SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71 (269)
T ss_pred CceEEEEEEEEEcCCCC-------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 34689999999996431 15899999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++.. .+..++|+.+|||||.+
T Consensus 72 ~~~~-~~~~~~~~~i~~v~q~~ 92 (269)
T PRK13648 72 AITD-DNFEKLRKHIGIVFQNP 92 (269)
T ss_pred ECCc-CCHHHHHhheeEEEeCh
Confidence 9853 34567788999999985
No 53
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6e-17 Score=161.90 Aligned_cols=87 Identities=17% Similarity=0.360 Sum_probs=76.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..+++++|++.|++. ++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~ 70 (279)
T PRK13635 4 EIIRVEHISFRYPDA-------------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV 70 (279)
T ss_pred ceEEEEEEEEEeCCC-------------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 368999999999642 1259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+.+ ....+.++.+||+||..
T Consensus 71 i~~-~~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 71 LSE-ETVWDVRRQVGMVFQNP 90 (279)
T ss_pred CCc-CcHHHHhhheEEEEeCH
Confidence 853 23455678899999975
No 54
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.70 E-value=3.8e-17 Score=157.32 Aligned_cols=90 Identities=27% Similarity=0.495 Sum_probs=72.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++.. ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGGG-----------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCCC-----------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehh
Confidence 36889999996421 0125999999999999999999999999999999999999999999999999874
Q ss_pred Ccc--cHHH-hhccEEEEccCCCc
Q 010435 487 SSV--SMTN-IQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~--~~~~-~r~~iG~cpQ~~~L 507 (510)
... +... .++.+||+||.+.+
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred hcchhHHHHHHhhcEEEEeecccc
Confidence 211 1122 35789999998643
No 55
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=5.2e-17 Score=150.56 Aligned_cols=87 Identities=24% Similarity=0.520 Sum_probs=74.4
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++. ..+++++||++++||+++|+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus 1 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPGRP-------------KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh
Confidence 36889999996431 15899999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ......++.+|||||+..+
T Consensus 68 ~-~~~~~~~~~i~~~~~~~~~ 87 (171)
T cd03228 68 D-LDLESLRKNIAYVPQDPFL 87 (171)
T ss_pred h-cCHHHHHhhEEEEcCCchh
Confidence 2 2345667889999998643
No 56
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.70 E-value=4.3e-17 Score=170.58 Aligned_cols=89 Identities=29% Similarity=0.504 Sum_probs=78.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
.+.+++++++|.|++- +||+++||++++|||+||+|.||||||||+|+|+|.++||+|+|.++|.
T Consensus 6 ~~ll~~~~i~K~FggV---------------~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~ 70 (500)
T COG1129 6 PPLLELRGISKSFGGV---------------KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGK 70 (500)
T ss_pred cceeeeecceEEcCCc---------------eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCE
Confidence 3468999999999753 7999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+......+.....|+.++|+-.|
T Consensus 71 ~~~~~sp~~A~~~GI~~V~QEl~L 94 (500)
T COG1129 71 PVAFSSPRDALAAGIATVHQELSL 94 (500)
T ss_pred EccCCCHHHHHhCCcEEEeechhc
Confidence 986434455556789999997654
No 57
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.70 E-value=3.8e-17 Score=158.39 Aligned_cols=86 Identities=24% Similarity=0.447 Sum_probs=73.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc-----cCCcceEEEc
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----PVTGGDALIY 481 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~-----~pt~G~i~i~ 481 (510)
++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYGDK---------------HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEEC
Confidence 4689999999542 5999999999999999999999999999999999999 9999999999
Q ss_pred CeecCCcc-cHHHhhccEEEEccCCCc
Q 010435 482 GFSIRSSV-SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 482 g~~i~~~~-~~~~~r~~iG~cpQ~~~L 507 (510)
|.++.... +....|+.+||+||+..+
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchh
Confidence 99874311 145668899999998643
No 58
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.70 E-value=5.5e-17 Score=158.60 Aligned_cols=86 Identities=23% Similarity=0.536 Sum_probs=74.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFGPT---------------QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEECCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 6789999999532 5999999999999999999999999999999999999999999999999985
Q ss_pred Cc-ccHHHhhccEEEEccCCCc
Q 010435 487 SS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+....++.+||+||...+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~ 88 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYL 88 (240)
T ss_pred cCChhHHHHhhceEEEeccccc
Confidence 31 1235668899999997643
No 59
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.5e-17 Score=162.31 Aligned_cols=90 Identities=24% Similarity=0.440 Sum_probs=75.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++|+|.|++... ..+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEGTP----------FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCCCc----------cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 3789999999964210 012599999999999999999999999999999999999999999999999998
Q ss_pred CCcc-cHHHhhccEEEEccCC
Q 010435 486 RSSV-SMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~-~~~~~r~~iG~cpQ~~ 505 (510)
.... ...+.++.+|||||..
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~ 92 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYP 92 (287)
T ss_pred CCcCccHHHHhhceEEEecCc
Confidence 5311 2346788999999974
No 60
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.70 E-value=4.5e-17 Score=154.95 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=73.7
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCERDGR---------------ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEeCCc---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 3689999999542 5899999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .....|+.+||+||.+.+
T Consensus 66 ~--~~~~~~~~i~~~~q~~~~ 84 (201)
T cd03231 66 F--QRDSIARGLLYLGHAPGI 84 (201)
T ss_pred c--ccHHhhhheEEecccccc
Confidence 2 234678899999997654
No 61
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.3e-17 Score=161.36 Aligned_cols=85 Identities=22% Similarity=0.415 Sum_probs=74.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|+++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYPDG--------------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcCCC--------------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECC
Confidence 6789999999532 14999999999999999999999999999999999999999999999999985
Q ss_pred CcccHHHhhccEEEEccCC
Q 010435 487 SSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~ 505 (510)
........++.+|||||..
T Consensus 68 ~~~~~~~~~~~i~~v~q~~ 86 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNP 86 (274)
T ss_pred ccccHHHHHhheEEEEECh
Confidence 3222456678999999974
No 62
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=4.7e-17 Score=159.07 Aligned_cols=87 Identities=31% Similarity=0.583 Sum_probs=74.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|+++ ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 1 l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 66 (241)
T cd03256 1 IEVENLSKTYPNG--------------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDIN 66 (241)
T ss_pred CEEeeEEEecCCc--------------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecc
Confidence 3688999999641 15999999999999999999999999999999999999999999999999884
Q ss_pred Ccc--cHHHhhccEEEEccCCCc
Q 010435 487 SSV--SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~--~~~~~r~~iG~cpQ~~~L 507 (510)
... +....++.+||+||...+
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~ 89 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNL 89 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcc
Confidence 311 134567899999998643
No 63
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.70 E-value=5.2e-17 Score=167.18 Aligned_cols=84 Identities=27% Similarity=0.475 Sum_probs=74.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFGAF---------------TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeCCe---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 58999999999642 589999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+ ....++.+|||||+..|
T Consensus 69 ~~---~~~~~r~ig~v~Q~~~l 87 (353)
T TIGR03265 69 TR---LPPQKRDYGIVFQSYAL 87 (353)
T ss_pred CC---CCHHHCCEEEEeCCccc
Confidence 53 22347889999998754
No 64
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.69 E-value=6.3e-17 Score=155.36 Aligned_cols=87 Identities=28% Similarity=0.452 Sum_probs=74.1
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYPGG--------------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeCCC--------------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 6789999999422 15999999999999999999999999999999999999999999999999985
Q ss_pred Ccc--cHHHhhccEEEEccCCCc
Q 010435 487 SSV--SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~--~~~~~r~~iG~cpQ~~~L 507 (510)
... +....++.+||+||+..+
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~ 90 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRL 90 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhh
Confidence 311 233567899999998643
No 65
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7.3e-17 Score=160.69 Aligned_cols=88 Identities=27% Similarity=0.493 Sum_probs=76.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++|++|.|++.. +.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus 5 ~~~l~~~nl~~~~~~~~-------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 71 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE-------------NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI 71 (271)
T ss_pred ceEEEEEeEEEEcCCCC-------------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 34689999999996321 15999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++.. .+..++|+.+|||||..
T Consensus 72 ~i~~-~~~~~~~~~i~~v~q~~ 92 (271)
T PRK13632 72 TISK-ENLKEIRKKIGIIFQNP 92 (271)
T ss_pred ecCc-CCHHHHhcceEEEEeCH
Confidence 9852 34456788999999985
No 66
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.69 E-value=3.2e-17 Score=180.88 Aligned_cols=90 Identities=16% Similarity=0.355 Sum_probs=82.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++|++++|+... ..+|+|+||+|++||.+||+|+|||||||++|+|+|+++|++|+|.+||+
T Consensus 469 ~g~I~~~nvsf~y~~~~-------------~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 469 QGEIEFENVSFRYGPDD-------------PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred CceEEEEEEEEEeCCCC-------------cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 45799999999997652 16999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+.+ -+.+.+|+++||+||++.|
T Consensus 536 dl~~-i~~~~lR~~ig~V~Q~~~L 558 (709)
T COG2274 536 DLND-IDLASLRRQVGYVLQDPFL 558 (709)
T ss_pred eHHh-cCHHHHHhheeEEcccchh
Confidence 9973 6789999999999999876
No 67
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7.3e-17 Score=161.90 Aligned_cols=89 Identities=18% Similarity=0.332 Sum_probs=75.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++||+|.|++... ..+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 3 l~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGTP----------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCCc----------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 789999999964210 0125999999999999999999999999999999999999999999999999984
Q ss_pred Cc---ccHHHhhccEEEEccCC
Q 010435 487 SS---VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~~---~~~~~~r~~iG~cpQ~~ 505 (510)
.. .+..++|+.+|||||..
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~ 94 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFP 94 (286)
T ss_pred cccccchHHHHHhheEEEecCh
Confidence 21 23457789999999974
No 68
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=6.6e-17 Score=158.21 Aligned_cols=86 Identities=23% Similarity=0.476 Sum_probs=75.4
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSFGK---------------EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence 47899999999542 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ....+.|+.+||+||...+
T Consensus 68 ~~-~~~~~~~~~i~~~~q~~~~ 88 (241)
T PRK14250 68 KT-IDVIDLRRKIGMVFQQPHL 88 (241)
T ss_pred hh-cChHHhhhcEEEEecCchh
Confidence 52 2345667899999998643
No 69
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=7.4e-17 Score=149.78 Aligned_cols=83 Identities=29% Similarity=0.570 Sum_probs=72.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|++. .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 65 (173)
T cd03230 1 IEVRNLSKRYGKK---------------TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK 65 (173)
T ss_pred CEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 3678999999532 5899999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhccEEEEccCCC
Q 010435 487 SSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~ 506 (510)
. .. .+.|+.+|||||+..
T Consensus 66 ~-~~-~~~~~~i~~~~q~~~ 83 (173)
T cd03230 66 K-EP-EEVKRRIGYLPEEPS 83 (173)
T ss_pred c-ch-HhhhccEEEEecCCc
Confidence 3 22 466789999999864
No 70
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.69 E-value=5.5e-17 Score=155.57 Aligned_cols=86 Identities=23% Similarity=0.547 Sum_probs=74.3
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|+++ .+++++||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFGDF---------------HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEECCe---------------EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 3688999999542 5999999999999999999999999999999999999999999999999884
Q ss_pred C-cccHHHhhccEEEEccCCCc
Q 010435 487 S-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ..+....++.+||+||...+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~ 87 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNL 87 (213)
T ss_pred ccchhHHHHHhcceEEeccccc
Confidence 2 12345678899999997643
No 71
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=9.2e-17 Score=156.73 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=74.5
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|+++ .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYGKI---------------QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeCCc---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEec
Confidence 58999999999532 599999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhccEEEEccCCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
......+..++.+||+||...
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~ 90 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRR 90 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcc
Confidence 532222345778999999764
No 72
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=6.2e-17 Score=158.45 Aligned_cols=86 Identities=29% Similarity=0.510 Sum_probs=74.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++. ..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~--------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (242)
T cd03295 1 IEFENVTKRYGGG--------------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIR 66 (242)
T ss_pred CEEEEEEEEeCCc--------------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcC
Confidence 3678999999641 15999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .+.++.++.+|||||.+.+
T Consensus 67 ~-~~~~~~~~~i~~~~q~~~~ 86 (242)
T cd03295 67 E-QDPVELRRKIGYVIQQIGL 86 (242)
T ss_pred c-CChHHhhcceEEEccCccc
Confidence 3 2345667899999998643
No 73
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.69 E-value=6e-17 Score=166.69 Aligned_cols=84 Identities=25% Similarity=0.476 Sum_probs=74.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|++. .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++
T Consensus 2 ~L~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFGRT---------------QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeCCe---------------EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 37899999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ....++.+|||||+..|
T Consensus 67 ~~---~~~~~r~i~~v~Q~~~l 85 (353)
T PRK10851 67 SR---LHARDRKVGFVFQHYAL 85 (353)
T ss_pred CC---CCHHHCCEEEEecCccc
Confidence 53 22346789999998754
No 74
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.69 E-value=8.7e-17 Score=149.32 Aligned_cols=87 Identities=20% Similarity=0.406 Sum_probs=74.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|++.+ ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPGAE-------------PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence 36889999996421 25999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+ ...++.++.+||++|...+
T Consensus 68 ~-~~~~~~~~~i~~~~q~~~~ 87 (173)
T cd03246 68 Q-WDPNELGDHVGYLPQDDEL 87 (173)
T ss_pred c-CCHHHHHhheEEECCCCcc
Confidence 3 3345678899999998643
No 75
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.3e-17 Score=160.33 Aligned_cols=90 Identities=22% Similarity=0.401 Sum_probs=75.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|+.. .|++|++|+|+.||.++|+|||||||||++++|+|+..|++|+|.++|.-+
T Consensus 2 ~i~i~~~~~~~~~~---------------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l 66 (345)
T COG1118 2 SIRINNVKKRFGAF---------------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVL 66 (345)
T ss_pred ceeehhhhhhcccc---------------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEec
Confidence 37888999999653 699999999999999999999999999999999999999999999999933
Q ss_pred CCcccHHHhhccEEEEccCCCc-cCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF-SYL 510 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L-~~~ 510 (510)
.+.++...-.++||+++||-.| .+|
T Consensus 67 ~D~~~~~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 67 FDVSNLAVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred cchhccchhhcceeEEEechhhcccc
Confidence 3223334446789999998765 443
No 76
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.69 E-value=7.9e-17 Score=157.65 Aligned_cols=87 Identities=29% Similarity=0.402 Sum_probs=73.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 66 (242)
T TIGR03411 2 ILYLEGLSVSFDGF---------------KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL 66 (242)
T ss_pred eEEEEeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec
Confidence 47899999999542 599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
......+..++.+||+||.+.+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~ 88 (242)
T TIGR03411 67 TGLPEHQIARAGIGRKFQKPTV 88 (242)
T ss_pred CCCCHHHHHhcCeeEecccccc
Confidence 5322222345679999998643
No 77
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.69 E-value=8.1e-17 Score=153.87 Aligned_cols=89 Identities=19% Similarity=0.337 Sum_probs=77.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++++++.|++.. ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~-------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 71 (207)
T cd03369 5 GEIEVENLSVRYAPDL-------------PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID 71 (207)
T ss_pred CeEEEEEEEEEeCCCC-------------cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence 4589999999996421 159999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.. ...++.|+.+|||||+..+
T Consensus 72 ~~~-~~~~~~~~~i~~v~q~~~~ 93 (207)
T cd03369 72 IST-IPLEDLRSSLTIIPQDPTL 93 (207)
T ss_pred hHH-CCHHHHHhhEEEEecCCcc
Confidence 742 3455678899999998644
No 78
>PRK10908 cell division protein FtsE; Provisional
Probab=99.69 E-value=7.9e-17 Score=155.63 Aligned_cols=87 Identities=22% Similarity=0.389 Sum_probs=74.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++. ..+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYLGG--------------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEecCC--------------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 6789999999422 15999999999999999999999999999999999999999999999999884
Q ss_pred Ccc--cHHHhhccEEEEccCCCc
Q 010435 487 SSV--SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~--~~~~~r~~iG~cpQ~~~L 507 (510)
... +....|+.+||+||+..+
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred cCChhHHHHHHhheEEEecCccc
Confidence 311 233467899999998643
No 79
>PLN03140 ABC transporter G family member; Provisional
Probab=99.69 E-value=9.4e-15 Score=173.50 Aligned_cols=97 Identities=21% Similarity=0.280 Sum_probs=74.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcC
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYG 482 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g 482 (510)
..+.++||+...+...... ....+++.+.+++|+|+.+++||+++|+||||||||||+++|+|..++ .+|++.++|
T Consensus 866 ~~~~~~~v~y~v~~~~~~~--~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG 943 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMK--EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943 (1470)
T ss_pred ceEEEEEEEEEEccCcccc--ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECC
Confidence 4689999998875321100 000111234699999999999999999999999999999999999764 689999999
Q ss_pred eecCCcccHHHhhccEEEEccCCCc
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. ....++.+|||+|.|.+
T Consensus 944 ~~~~----~~~~~~~igyv~Q~d~~ 964 (1470)
T PLN03140 944 FPKK----QETFARISGYCEQNDIH 964 (1470)
T ss_pred ccCC----hHHhhhheEEEcccccc
Confidence 8863 13457789999999865
No 80
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.69 E-value=5.9e-17 Score=153.29 Aligned_cols=90 Identities=19% Similarity=0.384 Sum_probs=78.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||++.|+++.. ..+||++|||++.+||++||+|++||||||+.++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~v~nl~~~y~~~~~-----------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGKF-----------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCcc-----------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence 5899999999976532 12699999999999999999999999999999999999999999999999877
Q ss_pred CCcccHHHhhccEEEEccCCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
......+..++.+.+++|+.-
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~ 92 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPY 92 (252)
T ss_pred CccccchhhccceeEEecCCc
Confidence 543334467889999999874
No 81
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=8.5e-17 Score=160.42 Aligned_cols=85 Identities=27% Similarity=0.412 Sum_probs=75.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|++. ..+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 4 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKDG--------------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCCC--------------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 58999999999532 1599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.. ....+.++.+||+||..
T Consensus 70 ~~-~~~~~~~~~i~~v~q~~ 88 (274)
T PRK13647 70 NA-ENEKWVRSKVGLVFQDP 88 (274)
T ss_pred CC-CCHHHHHhhEEEEecCh
Confidence 53 33456678899999975
No 82
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.4e-17 Score=158.61 Aligned_cols=83 Identities=25% Similarity=0.436 Sum_probs=72.4
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 3 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFGDF---------------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEECCE---------------EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 7899999999642 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ...++.+||+||...+
T Consensus 68 ~~---~~~~~~i~~v~q~~~~ 85 (239)
T cd03296 68 DV---PVQERNVGFVFQHYAL 85 (239)
T ss_pred cC---CccccceEEEecCCcc
Confidence 21 1235789999998643
No 83
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=9e-17 Score=159.49 Aligned_cols=87 Identities=22% Similarity=0.361 Sum_probs=76.2
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~l~i~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 73 (265)
T PRK10575 9 DTTFALRNVSFRVPGR---------------TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 (265)
T ss_pred CceEEEeeEEEEECCE---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE
Confidence 3469999999999532 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
++.. ...++.|+.+||+||...
T Consensus 74 ~~~~-~~~~~~~~~i~~v~q~~~ 95 (265)
T PRK10575 74 PLES-WSSKAFARKVAYLPQQLP 95 (265)
T ss_pred ehhh-CCHHHHhhheEEeccCCC
Confidence 8742 234566788999999753
No 84
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1e-16 Score=160.57 Aligned_cols=87 Identities=30% Similarity=0.470 Sum_probs=75.8
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++ +.+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~ 69 (283)
T PRK13636 4 YILKVEELNYNYSDG--------------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP 69 (283)
T ss_pred ceEEEEeEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEE
Confidence 368999999999532 159999999999999999999999999999999999999999999999999
Q ss_pred cCC-cccHHHhhccEEEEccCC
Q 010435 485 IRS-SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~-~~~~~~~r~~iG~cpQ~~ 505 (510)
+.. ..+..+.|+.+||+||..
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~ 91 (283)
T PRK13636 70 IDYSRKGLMKLRESVGMVFQDP 91 (283)
T ss_pred CCCCcchHHHHHhhEEEEecCc
Confidence 841 123456788999999975
No 85
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=8.5e-17 Score=161.71 Aligned_cols=89 Identities=19% Similarity=0.318 Sum_probs=75.3
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|++... ....+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKTP----------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCCc----------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 789999999964310 0125999999999999999999999999999999999999999999999999984
Q ss_pred C---cccHHHhhccEEEEccCC
Q 010435 487 S---SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~---~~~~~~~r~~iG~cpQ~~ 505 (510)
. .....+.|+.+|||||..
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~ 94 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFP 94 (290)
T ss_pred cccccchHHHHHhhEEEEeeCc
Confidence 2 123556788999999974
No 86
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.69 E-value=6.8e-17 Score=157.61 Aligned_cols=87 Identities=14% Similarity=0.264 Sum_probs=74.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|++.. ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKPDG-------------PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCCCC-------------ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH
Confidence 46889999996421 15999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .+..+.|+.+||+||+..+
T Consensus 68 ~-~~~~~~~~~i~~~~q~~~~ 87 (237)
T cd03252 68 L-ADPAWLRRQVGVVLQENVL 87 (237)
T ss_pred h-cCHHHHhhcEEEEcCCchh
Confidence 2 3345678899999998644
No 87
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.1e-16 Score=160.21 Aligned_cols=92 Identities=15% Similarity=0.332 Sum_probs=76.8
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++|.|++... ...+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~---------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~ 73 (280)
T PRK13633 3 EMIKCKNVSYKYESNEE---------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73 (280)
T ss_pred ceEEEeeeEEEcCCCCC---------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 35899999999964310 012359999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+.......+.|+.+|||||..
T Consensus 74 i~~~~~~~~~~~~i~~v~q~~ 94 (280)
T PRK13633 74 TSDEENLWDIRNKAGMVFQNP 94 (280)
T ss_pred ccccccHHHHhhheEEEecCh
Confidence 853222356688999999975
No 88
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7.1e-17 Score=166.36 Aligned_cols=85 Identities=24% Similarity=0.508 Sum_probs=74.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|++. +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYDGK--------------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeCCC--------------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 48899999999422 1599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+ ....++.+|||||+..|
T Consensus 69 ~~---~~~~~r~ig~v~Q~~~l 87 (356)
T PRK11650 69 NE---LEPADRDIAMVFQNYAL 87 (356)
T ss_pred CC---CCHHHCCEEEEeCCccc
Confidence 53 22345799999998765
No 89
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.69 E-value=8.1e-17 Score=158.12 Aligned_cols=87 Identities=25% Similarity=0.459 Sum_probs=75.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~i 480 (510)
+++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.+
T Consensus 1 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 1 AIEIENLNLFYGEK---------------EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred CEEEEEEEEEECCe---------------eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence 36899999999642 5999999999999999999999999999999999999998 999999
Q ss_pred cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++... .+....|+.+||+||+..+
T Consensus 66 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 66 DGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred CCEEccccccchHHHHhheEEEecCccc
Confidence 99998421 1345668899999998643
No 90
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.1e-16 Score=160.02 Aligned_cols=85 Identities=27% Similarity=0.478 Sum_probs=74.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|++. ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 3 ~l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (277)
T PRK13652 3 LIETRDLCYSYSGS--------------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI 68 (277)
T ss_pred eEEEEEEEEEeCCC--------------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 47899999999532 1499999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.. ...++.++.+|||||++
T Consensus 69 ~~-~~~~~~~~~i~~v~q~~ 87 (277)
T PRK13652 69 TK-ENIREVRKFVGLVFQNP 87 (277)
T ss_pred Cc-CCHHHHHhheEEEecCc
Confidence 53 23456788999999985
No 91
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.69 E-value=8.2e-17 Score=150.17 Aligned_cols=86 Identities=22% Similarity=0.388 Sum_probs=73.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++.. ..+++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 1 i~~~~~~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPEQE-------------QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCCCC-------------ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH
Confidence 36789999996421 14899999999999999999999999999999999999999999999999873
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. . ....|+.+|||||+..+
T Consensus 68 ~-~-~~~~~~~i~~~~q~~~~ 86 (178)
T cd03247 68 D-L-EKALSSLISVLNQRPYL 86 (178)
T ss_pred H-H-HHHHHhhEEEEccCCee
Confidence 2 1 34567889999998644
No 92
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.7e-17 Score=155.20 Aligned_cols=81 Identities=32% Similarity=0.541 Sum_probs=71.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFGRV---------------TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEECCE---------------EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh
Confidence 3688999999532 5999999999999999999999999999999999999999999999998873
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ..++.+|||||...+
T Consensus 66 ~-----~~~~~i~~~~q~~~~ 81 (210)
T cd03269 66 I-----AARNRIGYLPEERGL 81 (210)
T ss_pred H-----HHHccEEEeccCCcC
Confidence 1 457789999998643
No 93
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.69 E-value=8.2e-17 Score=155.97 Aligned_cols=88 Identities=22% Similarity=0.330 Sum_probs=74.3
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++.. +...+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTGG-----------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCCC-----------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 67899999996421 0125899999999999999999999999999999999999999999999999985
Q ss_pred Cccc--HHHhhccEEEEccCC
Q 010435 487 SSVS--MTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~~~~--~~~~r~~iG~cpQ~~ 505 (510)
.... ....|+.+||+||+.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~ 91 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDP 91 (228)
T ss_pred ccchhhHHHhhccEEEEecCc
Confidence 3111 245678999999986
No 94
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=9e-17 Score=165.10 Aligned_cols=90 Identities=24% Similarity=0.489 Sum_probs=75.4
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++.. +.+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~~-----------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQGG-----------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCCC-----------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 68999999996311 0126999999999999999999999999999999999999999999999999985
Q ss_pred Cc--ccHHHhhccEEEEccCCCc
Q 010435 487 SS--VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~--~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+....|+.+||+||+..+
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCcc
Confidence 31 1233457899999998644
No 95
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.69 E-value=9.2e-17 Score=154.17 Aligned_cols=87 Identities=24% Similarity=0.421 Sum_probs=73.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++. +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~--------------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYPNG--------------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeCCC--------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence 3688999999542 15999999999999999999999999999999999999999999999999885
Q ss_pred Ccc--cHHHhhccEEEEccCCCc
Q 010435 487 SSV--SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~--~~~~~r~~iG~cpQ~~~L 507 (510)
... +....|+.++|+||...+
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~ 89 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRL 89 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchh
Confidence 321 234567899999998643
No 96
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.3e-16 Score=162.16 Aligned_cols=92 Identities=14% Similarity=0.369 Sum_probs=77.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++|+++.|++... ....+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.
T Consensus 19 ~~~l~~~nl~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~ 88 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQE----------NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDI 88 (320)
T ss_pred CceEEEEeEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCE
Confidence 356999999999964210 1125999999999999999999999999999999999999999999999999
Q ss_pred ecCCc---------------ccHHHhhccEEEEccCC
Q 010435 484 SIRSS---------------VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~---------------~~~~~~r~~iG~cpQ~~ 505 (510)
++.+. .+....|+.+|||||..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~ 125 (320)
T PRK13631 89 YIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP 125 (320)
T ss_pred EcccccccccccccccccccchHHHHHhcEEEEEECc
Confidence 87431 13456789999999975
No 97
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=8.3e-17 Score=156.60 Aligned_cols=90 Identities=26% Similarity=0.494 Sum_probs=74.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|+++. +..++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDTG-----------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCCC-----------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 67899999996421 0125999999999999999999999999999999999999999999999999985
Q ss_pred Ccc--cHHHhhccEEEEccCCCc
Q 010435 487 SSV--SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~--~~~~~r~~iG~cpQ~~~L 507 (510)
... +..+.++.+||+||...+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~ 93 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNL 93 (233)
T ss_pred cCCHHHHHHHHhheEEEccCccc
Confidence 311 123457889999998654
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.68 E-value=8.6e-17 Score=156.88 Aligned_cols=84 Identities=26% Similarity=0.435 Sum_probs=72.7
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYGAR---------------RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcc
Confidence 6789999999532 5999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .. ...++.+||+||...+
T Consensus 67 ~-~~-~~~~~~i~~~~q~~~~ 85 (236)
T TIGR03864 67 R-AP-RAALARLGVVFQQPTL 85 (236)
T ss_pred c-CC-hhhhhhEEEeCCCCCC
Confidence 3 12 2345689999998654
No 99
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.68 E-value=4.9e-17 Score=164.39 Aligned_cols=71 Identities=37% Similarity=0.635 Sum_probs=64.8
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++|+.+|||||+..+
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR--EPRKVRRSIGIVPQYASV 77 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc--CHHHHHhhcEEecCCCCC
Confidence 69999999999999999999999999999999999999999999999999843 345678899999998754
No 100
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.68 E-value=6e-17 Score=155.39 Aligned_cols=83 Identities=29% Similarity=0.467 Sum_probs=71.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFGNV---------------TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEECCe---------------eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 4688999999642 5999999999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ...++.+||+||+..+
T Consensus 66 ~~---~~~~~~i~~~~q~~~~ 83 (213)
T cd03301 66 DL---PPKDRDIAMVFQNYAL 83 (213)
T ss_pred cC---CcccceEEEEecChhh
Confidence 21 1234689999998643
No 101
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=9.6e-17 Score=159.81 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=73.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQDE---------------PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcCCc---------------ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcc
Confidence 6789999999542 5999999999999999999999999999999999999999999999999984
Q ss_pred C-cccHHHhhccEEEEccCC
Q 010435 487 S-SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~-~~~~~~~r~~iG~cpQ~~ 505 (510)
. ..+....|+.+||+||+.
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~ 86 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDP 86 (271)
T ss_pred cccCCHHHHHhheEEEeeCh
Confidence 1 123446678999999975
No 102
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.2e-16 Score=160.53 Aligned_cols=90 Identities=13% Similarity=0.329 Sum_probs=75.0
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|++... ..+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 2 ~i~~~~l~~~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGTP----------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 4789999999964210 012599999999999999999999999999999999999999999999999988
Q ss_pred CCc---ccHHHhhccEEEEccCC
Q 010435 486 RSS---VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~---~~~~~~r~~iG~cpQ~~ 505 (510)
... .+..+.++.+||+||..
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~ 94 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFP 94 (287)
T ss_pred ccccccchHHHHHhceEEEEeCh
Confidence 421 12456678999999974
No 103
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.68 E-value=1.2e-16 Score=157.89 Aligned_cols=86 Identities=23% Similarity=0.422 Sum_probs=75.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~ 66 (258)
T PRK13548 2 MLEARNLSVRLGGR---------------TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66 (258)
T ss_pred eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence 47899999999642 599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ....+.++.+||+||...+
T Consensus 67 ~~-~~~~~~~~~i~~~~q~~~~ 87 (258)
T PRK13548 67 AD-WSPAELARRRAVLPQHSSL 87 (258)
T ss_pred cc-CCHHHhhhheEEEccCCcC
Confidence 42 2344567789999998654
No 104
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.68 E-value=6.4e-17 Score=154.33 Aligned_cols=84 Identities=18% Similarity=0.317 Sum_probs=70.6
Q ss_pred EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (510)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~ 488 (510)
++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 65 (206)
T TIGR03608 1 LKNISKKFGDK---------------IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPL 65 (206)
T ss_pred CcceEEEECCE---------------EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcccc
Confidence 46888998532 599999999999999999999999999999999999999999999999986321
Q ss_pred cc---HHHhhccEEEEccCCCc
Q 010435 489 VS---MTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 489 ~~---~~~~r~~iG~cpQ~~~L 507 (510)
.. ....++.+|||+|...+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 66 NSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred chhhHHHHHHhCeeEEecchhh
Confidence 11 23457789999998643
No 105
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1e-16 Score=159.12 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=76.7
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...+++++++|.|++. .+++++||++.+||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~~l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 69 (265)
T PRK10253 5 VARLRGEQLTLGYGKY---------------TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE 69 (265)
T ss_pred ccEEEEEEEEEEECCE---------------EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE
Confidence 3579999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. ....+.++.+|||||...+
T Consensus 70 ~~~~-~~~~~~~~~i~~v~q~~~~ 92 (265)
T PRK10253 70 HIQH-YASKEVARRIGLLAQNATT 92 (265)
T ss_pred Ehhh-CCHHHHhhheEEeeccCcC
Confidence 8842 2345567789999998643
No 106
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.6e-16 Score=154.73 Aligned_cols=91 Identities=20% Similarity=0.394 Sum_probs=74.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
+.+++++++|.|+++. +...+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 72 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS-----------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP 72 (233)
T ss_pred ceEEEEeEEEEcCCCC-----------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 3589999999996421 01259999999999999999999999999999999999999999999999999
Q ss_pred cCCccc--HHHhh-ccEEEEccCCC
Q 010435 485 IRSSVS--MTNIQ-KSIGVCPQVTL 506 (510)
Q Consensus 485 i~~~~~--~~~~r-~~iG~cpQ~~~ 506 (510)
+..... ..+.| +.+||+||+..
T Consensus 73 i~~~~~~~~~~~~~~~i~~v~q~~~ 97 (233)
T PRK11629 73 MSKLSSAAKAELRNQKLGFIYQFHH 97 (233)
T ss_pred cCcCCHHHHHHHHhccEEEEecCcc
Confidence 853111 12233 67999999853
No 107
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=8.7e-17 Score=155.11 Aligned_cols=84 Identities=23% Similarity=0.459 Sum_probs=71.7
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|++.. ..+.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGGGG-----------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCCCC-----------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 46899999996421 0126999999999999999999999999999999999999999999999999873
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
..++.+||+||...+
T Consensus 70 ------~~~~~i~~v~q~~~~ 84 (220)
T cd03293 70 ------GPGPDRGYVFQQDAL 84 (220)
T ss_pred ------cccCcEEEEeccccc
Confidence 236789999997643
No 108
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.68 E-value=1.1e-16 Score=158.19 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=73.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAGGR---------------LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEECCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcc
Confidence 6889999999542 5999999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhccEEEEccCC
Q 010435 487 SSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~ 505 (510)
. ...+..++.+||+||..
T Consensus 67 ~-~~~~~~~~~i~~~~q~~ 84 (256)
T TIGR03873 67 G-LSRRARARRVALVEQDS 84 (256)
T ss_pred c-CCHHHHhhheEEecccC
Confidence 3 23456677899999986
No 109
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=159.43 Aligned_cols=87 Identities=18% Similarity=0.392 Sum_probs=76.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|+++.|++.. ...+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 4 ~l~~~~l~~~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ------------EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCCC------------cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 589999999996421 12599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.. ....+.|+.+||+||..
T Consensus 72 ~~-~~~~~~~~~i~~v~q~~ 90 (279)
T PRK13650 72 TE-ENVWDIRHKIGMVFQNP 90 (279)
T ss_pred Cc-CcHHHHHhhceEEEcCh
Confidence 53 34556788999999975
No 110
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.4e-16 Score=157.15 Aligned_cols=87 Identities=30% Similarity=0.485 Sum_probs=74.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFGGL---------------LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEECCE---------------EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEEC
Confidence 58999999999532 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
......+..+..++|+||.+.+
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~ 91 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRL 91 (255)
T ss_pred CCCCHHHHHhcCeEEeccCccc
Confidence 5322223345679999998644
No 111
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.68 E-value=1.5e-16 Score=148.88 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=71.0
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.| +++++||++++||+++|+|+|||||||++++|+|+++|++|++.++|.++
T Consensus 4 ~l~~~~l~~~~-------------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG-------------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe-------------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 58899998877 69999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccC
Q 010435 486 RSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~ 504 (510)
......+..|+.+|||||.
T Consensus 65 ~~~~~~~~~~~~i~~~~q~ 83 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPED 83 (182)
T ss_pred CccCHHHHHhCCeEEecCC
Confidence 5322234567899999997
No 112
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.68 E-value=1.2e-16 Score=154.25 Aligned_cols=87 Identities=17% Similarity=0.394 Sum_probs=76.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|++.. +.+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRPNL-------------PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCCCC-------------cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhH
Confidence 78999999996431 15999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .+..+.++.+||+||...+
T Consensus 70 ~-~~~~~~~~~i~~~~q~~~l 89 (221)
T cd03244 70 K-IGLHDLRSRISIIPQDPVL 89 (221)
T ss_pred h-CCHHHHhhhEEEECCCCcc
Confidence 2 3455678899999998643
No 113
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1e-16 Score=156.09 Aligned_cols=87 Identities=23% Similarity=0.529 Sum_probs=74.7
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++.. +.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 1 i~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPGDG-------------PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCCCC-------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhh
Confidence 46899999996431 15899999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ....+.++.+||+||+..+
T Consensus 68 ~-~~~~~~~~~i~~~~q~~~~ 87 (234)
T cd03251 68 D-YTLASLRRQIGLVSQDVFL 87 (234)
T ss_pred h-CCHHHHHhhEEEeCCCCee
Confidence 2 2345678889999998644
No 114
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.68 E-value=1.3e-16 Score=158.76 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=75.2
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus 6 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 70 (269)
T PRK11831 6 NLVDMRGVSFTRGNR---------------CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN 70 (269)
T ss_pred ceEEEeCeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 468999999999532 59999999999999999999999999999999999999999999999998
Q ss_pred cCCcc--cHHHhhccEEEEccCCCc
Q 010435 485 IRSSV--SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~--~~~~~r~~iG~cpQ~~~L 507 (510)
+.... +....++.+||+||...+
T Consensus 71 i~~~~~~~~~~~~~~i~~v~q~~~~ 95 (269)
T PRK11831 71 IPAMSRSRLYTVRKRMSMLFQSGAL 95 (269)
T ss_pred ccccChhhHHHHhhcEEEEeccccc
Confidence 74211 223457789999998543
No 115
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.1e-16 Score=155.27 Aligned_cols=87 Identities=28% Similarity=0.435 Sum_probs=75.7
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|+++.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDEK--------------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCCC--------------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH
Confidence 37899999999632 1499999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+..+.|+.+|||||...+
T Consensus 68 ~~-~~~~~~~~~i~~~~q~~~~ 88 (229)
T cd03254 68 RD-ISRKSLRSMIGVVLQDTFL 88 (229)
T ss_pred HH-cCHHHHhhhEEEecCCchh
Confidence 42 3445678889999998643
No 116
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.68 E-value=1e-16 Score=156.92 Aligned_cols=86 Identities=26% Similarity=0.525 Sum_probs=73.4
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|+++ ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYPNG--------------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecCCC--------------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence 6789999999621 15999999999999999999999999999999999999999999999999874
Q ss_pred Ccc--cHHHhhccEEEEccCCC
Q 010435 487 SSV--SMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 487 ~~~--~~~~~r~~iG~cpQ~~~ 506 (510)
... +....|+.+||+||...
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~ 89 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYN 89 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCc
Confidence 211 23346788999999864
No 117
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.68 E-value=1.5e-16 Score=157.23 Aligned_cols=88 Identities=16% Similarity=0.331 Sum_probs=76.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..+++++|++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|++|++.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 68 (257)
T PRK10619 4 NKLNVIDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT 68 (257)
T ss_pred ccEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 358999999999642 59999999999999999999999999999999999999999999999998
Q ss_pred cCC------------cccHHHhhccEEEEccCCCc
Q 010435 485 IRS------------SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~------------~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.. ..+....|+.+||+||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 103 (257)
T PRK10619 69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 103 (257)
T ss_pred cccccccccccccccchHHHHHhhceEEEecCccc
Confidence 731 01235668899999998754
No 118
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.68 E-value=1.3e-16 Score=154.61 Aligned_cols=91 Identities=18% Similarity=0.360 Sum_probs=77.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++++++.|+++. .+.+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.
T Consensus 9 ~~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 76 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP------------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK 76 (226)
T ss_pred CceEEEEEEEEEeCCCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC
Confidence 45799999999996531 125999999999999999999999999999999999999999999999998
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. .+....++.+|||||...+
T Consensus 77 ~~~~-~~~~~~~~~i~~~~q~~~l 99 (226)
T cd03248 77 PISQ-YEHKYLHSKVSLVGQEPVL 99 (226)
T ss_pred chHH-cCHHHHHhhEEEEecccHH
Confidence 8742 2344567889999998643
No 119
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.68 E-value=1.5e-16 Score=153.42 Aligned_cols=90 Identities=23% Similarity=0.429 Sum_probs=73.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++.. +...+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEGK-----------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCCC-----------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence 67899999996421 0125999999999999999999999999999999999999999999999999874
Q ss_pred Ccc--cHHHhh-ccEEEEccCCCc
Q 010435 487 SSV--SMTNIQ-KSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~--~~~~~r-~~iG~cpQ~~~L 507 (510)
... +....| +.+||+||...+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred hcCHhHHHHHHHhcEEEEeccccc
Confidence 311 112234 689999998643
No 120
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.6e-16 Score=157.98 Aligned_cols=89 Identities=21% Similarity=0.437 Sum_probs=76.1
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
+..++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|
T Consensus 11 ~~~l~i~nl~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v 75 (269)
T PRK14259 11 NIIISLQNVTISYGTF---------------EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV 75 (269)
T ss_pred CceEEEEeEEEEECCE---------------EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 3569999999999542 59999999999999999999999999999999999987 699999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++.. ..+..+.|+.+||+||+..+
T Consensus 76 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 76 LFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 999998742 12345678899999998643
No 121
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.3e-16 Score=156.86 Aligned_cols=89 Identities=22% Similarity=0.436 Sum_probs=75.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
+..++++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 19 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 83 (268)
T PRK14248 19 EHILEVKDLSIYYGEK---------------RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83 (268)
T ss_pred CceEEEEEEEEEeCCc---------------eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE
Confidence 4569999999999642 59999999999999999999999999999999999864 799999
Q ss_pred EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++... .+....++.+||+||+..+
T Consensus 84 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 84 LYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred EECCEEcccccccHHHHhccEEEEecCCcc
Confidence 9999998421 2234567899999998643
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=9.6e-17 Score=153.77 Aligned_cols=83 Identities=31% Similarity=0.534 Sum_probs=72.7
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .+++|+||++++| +++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~---------------~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYGKK---------------RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEECCE---------------EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccc
Confidence 4688999999542 5999999999999 99999999999999999999999999999999999885
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .. .+.++.+||+||+..+
T Consensus 65 ~-~~-~~~~~~i~~~~q~~~~ 83 (211)
T cd03264 65 K-QP-QKLRRRIGYLPQEFGV 83 (211)
T ss_pred c-ch-HHHHhheEEecCCCcc
Confidence 3 22 5668899999998643
No 123
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.8e-16 Score=158.64 Aligned_cols=90 Identities=20% Similarity=0.324 Sum_probs=75.5
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|++... ..+++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGTP----------FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCCc----------cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 3789999999964210 012599999999999999999999999999999999999999999999999988
Q ss_pred CCc---ccHHHhhccEEEEccCC
Q 010435 486 RSS---VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~---~~~~~~r~~iG~cpQ~~ 505 (510)
... .+..+.|+.+||+||..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~ 94 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFP 94 (280)
T ss_pred cccccccCHHHHHhheEEEeeCh
Confidence 431 23456788999999974
No 124
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.9e-16 Score=159.04 Aligned_cols=89 Identities=20% Similarity=0.333 Sum_probs=75.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++... ..+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 2 i~~~~v~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNSP----------FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 689999999964210 0125999999999999999999999999999999999999999999999999984
Q ss_pred C---cccHHHhhccEEEEccCC
Q 010435 487 S---SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~---~~~~~~~r~~iG~cpQ~~ 505 (510)
. .....+.|+.+||++|++
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~ 93 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFP 93 (288)
T ss_pred cccccccHHHHHhhEEEEecCc
Confidence 2 123556788999999975
No 125
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=1.3e-16 Score=152.44 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=73.0
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|+++ .+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (207)
T PRK13539 2 MLEGEDLACVRGGR---------------VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66 (207)
T ss_pred EEEEEeEEEEECCe---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC
Confidence 37899999999542 599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. . ..++.+||++|.+.+
T Consensus 67 ~~---~-~~~~~~~~~~~~~~~ 84 (207)
T PRK13539 67 DD---P-DVAEACHYLGHRNAM 84 (207)
T ss_pred cc---h-hhHhhcEEecCCCcC
Confidence 31 1 278889999987644
No 126
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.67 E-value=5.9e-17 Score=155.48 Aligned_cols=78 Identities=24% Similarity=0.531 Sum_probs=69.2
Q ss_pred EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (510)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~ 488 (510)
++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 ~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-- 64 (213)
T cd03235 2 VEDLTVSYGGH---------------PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-- 64 (213)
T ss_pred cccceeEECCE---------------EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--
Confidence 57889999532 5999999999999999999999999999999999999999999999998762
Q ss_pred ccHHHhhccEEEEccCCCc
Q 010435 489 VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 489 ~~~~~~r~~iG~cpQ~~~L 507 (510)
..|+.+||+||+..+
T Consensus 65 ----~~~~~i~~v~q~~~~ 79 (213)
T cd03235 65 ----KERKRIGYVPQRRSI 79 (213)
T ss_pred ----HHHhheEEecccccc
Confidence 457789999997643
No 127
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=1.9e-16 Score=152.19 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=74.3
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++|++|.|+++ .+++++||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.
T Consensus 9 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 73 (214)
T PRK13543 9 PPLLAAHALAFSRNEE---------------PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK 73 (214)
T ss_pred cceEEEeeEEEecCCc---------------eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCE
Confidence 3469999999999542 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. .+.++.+||++|.+.+
T Consensus 74 ~i~~----~~~~~~i~~~~q~~~~ 93 (214)
T PRK13543 74 TATR----GDRSRFMAYLGHLPGL 93 (214)
T ss_pred Eccc----hhhhhceEEeecCccc
Confidence 8842 1345679999997643
No 128
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.8e-17 Score=151.28 Aligned_cols=85 Identities=22% Similarity=0.439 Sum_probs=77.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|++. .+++++|+++++|.+++++||||||||||++|++++.++++|+|+|+|+++.
T Consensus 2 I~i~nv~K~y~~~---------------~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~ 66 (252)
T COG4604 2 ITIENVSKSYGTK---------------VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELT 66 (252)
T ss_pred eeehhhhHhhCCE---------------EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecc
Confidence 6789999999653 6999999999999999999999999999999999999999999999999997
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+ ++.+++.+.+.+.-|.|.+
T Consensus 67 ~-~~s~~LAk~lSILkQ~N~i 86 (252)
T COG4604 67 S-TPSKELAKKLSILKQENHI 86 (252)
T ss_pred c-CChHHHHHHHHHHHhhchh
Confidence 4 6677888888888887754
No 129
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.67 E-value=1.9e-16 Score=156.37 Aligned_cols=83 Identities=17% Similarity=0.307 Sum_probs=73.6
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus 10 ~~~l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~ 74 (257)
T PRK11247 10 GTPLLLNAVSKRYGER---------------TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA 74 (257)
T ss_pred CCcEEEEEEEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 3569999999999642 5999999999999999999999999999999999999999999999987
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++ ...++.+||+||...+
T Consensus 75 ~~------~~~~~~i~~v~q~~~l 92 (257)
T PRK11247 75 PL------AEAREDTRLMFQDARL 92 (257)
T ss_pred EH------HHhhCceEEEecCccC
Confidence 65 2457889999998643
No 130
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.8e-16 Score=156.22 Aligned_cols=87 Identities=25% Similarity=0.487 Sum_probs=74.5
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~i 480 (510)
.+++++++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.+
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (253)
T PRK14267 4 AIETVNLRVYYGSN---------------HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68 (253)
T ss_pred eEEEEeEEEEeCCe---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 58999999999542 5999999999999999999999999999999999999874 999999
Q ss_pred cCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++.. ..+..+.|+.+||+||++.+
T Consensus 69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 69 FGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred CCEEccccccChHHHhhceeEEecCCcc
Confidence 9999841 11234567899999998643
No 131
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.67 E-value=1.6e-16 Score=164.61 Aligned_cols=86 Identities=27% Similarity=0.492 Sum_probs=75.6
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++|++|.|++. .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 12 ~~~L~l~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~ 76 (375)
T PRK09452 12 SPLVELRGISKSFDGK---------------EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ 76 (375)
T ss_pred CceEEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 3468999999999642 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+ ....++.+||+||...|
T Consensus 77 ~i~~---~~~~~r~ig~vfQ~~~l 97 (375)
T PRK09452 77 DITH---VPAENRHVNTVFQSYAL 97 (375)
T ss_pred ECCC---CCHHHCCEEEEecCccc
Confidence 9843 22346789999998754
No 132
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.9e-16 Score=156.00 Aligned_cols=88 Identities=24% Similarity=0.461 Sum_probs=75.1
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
++.++++++++.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 4 ~~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 68 (253)
T PRK14242 4 PPKMEARGLSFFYGDF---------------QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68 (253)
T ss_pred CcEEEEeeeEEEECCe---------------eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE
Confidence 4579999999999532 59999999999999999999999999999999999964 689999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCC
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~ 506 (510)
.++|.++.. ..+....|+.+||+||...
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 69 LLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred EECCEEccccccCHHHHhhcEEEEecCCC
Confidence 999998842 1234466889999999864
No 133
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.2e-16 Score=156.84 Aligned_cols=88 Identities=18% Similarity=0.392 Sum_probs=75.9
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i 478 (510)
...++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|
T Consensus 17 ~~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I 81 (267)
T PRK14235 17 EIKMRARDVSVFYGEK---------------QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI 81 (267)
T ss_pred CceEEEEeEEEEECCE---------------EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence 4579999999999642 599999999999999999999999999999999999975 89999
Q ss_pred EEcCeecCCc-ccHHHhhccEEEEccCCC
Q 010435 479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~ 506 (510)
+++|.++... .+....|+.+||+||+..
T Consensus 82 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 82 TLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EECCEECcccccchHHHhhceEEEecCCC
Confidence 9999998421 234567889999999854
No 134
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.8e-16 Score=155.16 Aligned_cols=87 Identities=20% Similarity=0.357 Sum_probs=74.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|+++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYGAH---------------QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEECCe---------------eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 37899999999542 599999999999999999999999999999999999999999999999987
Q ss_pred CC-----cccHHHhhccEEEEccCCCc
Q 010435 486 RS-----SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~-----~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ..+....|+.+||+||...+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccc
Confidence 21 11245668899999997643
No 135
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.7e-16 Score=155.76 Aligned_cols=86 Identities=19% Similarity=0.353 Sum_probs=74.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc---CCcceEEEcC
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG 482 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i~i~g 482 (510)
.++++|+++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g 66 (246)
T PRK14269 2 IAKTTNLNLFYGKK---------------QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG 66 (246)
T ss_pred ceeeeeeEEEECCE---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECC
Confidence 47899999999642 59999999999999999999999999999999999974 7999999999
Q ss_pred eecCCcccHHHhhccEEEEccCCCc
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++.+ .+....|+.+||+||+..+
T Consensus 67 ~~i~~-~~~~~~~~~i~~~~q~~~l 90 (246)
T PRK14269 67 KDVKN-QDVVALRKNVGMVFQQPNV 90 (246)
T ss_pred Eeccc-CCHHHHhhhEEEEecCCcc
Confidence 99853 3455678899999998643
No 136
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.67 E-value=1.9e-16 Score=157.27 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=75.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|+.+... ++++.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~------~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW------FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCCc------ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 58999999999632100 011123699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.. ...+..++.+||+||..
T Consensus 78 ~~-~~~~~~~~~i~~v~q~~ 96 (267)
T PRK15112 78 HF-GDYSYRSQRIRMIFQDP 96 (267)
T ss_pred CC-CchhhHhccEEEEecCc
Confidence 42 23344567899999975
No 137
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.5e-16 Score=164.93 Aligned_cols=84 Identities=21% Similarity=0.453 Sum_probs=73.7
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYGDV---------------VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 48899999999642 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ....++.+||+||...|
T Consensus 68 ~~---~~~~~~~i~~v~Q~~~l 86 (369)
T PRK11000 68 ND---VPPAERGVGMVFQSYAL 86 (369)
T ss_pred CC---CCHhHCCEEEEeCCccc
Confidence 43 22345789999998654
No 138
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.67 E-value=2e-16 Score=152.54 Aligned_cols=87 Identities=24% Similarity=0.492 Sum_probs=74.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++. +.+++|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPNQE-------------IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhH
Confidence 78999999996421 25999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .+..+.++.+|||||...+
T Consensus 70 ~-~~~~~~~~~i~~~~q~~~~ 89 (220)
T cd03245 70 Q-LDPADLRRNIGYVPQDVTL 89 (220)
T ss_pred H-CCHHHHHhhEEEeCCCCcc
Confidence 2 2334567889999998654
No 139
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.6e-16 Score=158.18 Aligned_cols=91 Identities=19% Similarity=0.400 Sum_probs=75.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++|.|+++.. ....+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP----------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCCc----------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 35899999999964310 01249999999999999999999999999999999999999999999999998
Q ss_pred cCC----cccHHHhhccEEEEccCC
Q 010435 485 IRS----SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~----~~~~~~~r~~iG~cpQ~~ 505 (510)
+.. ..+..+.|+.+||+||..
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~ 99 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFP 99 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCc
Confidence 731 113456788999999985
No 140
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.8e-16 Score=156.52 Aligned_cols=86 Identities=20% Similarity=0.427 Sum_probs=74.7
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|+++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (255)
T PRK11231 2 TLRTENLTVGYGTK---------------RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI 66 (255)
T ss_pred EEEEEeEEEEECCE---------------EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEh
Confidence 37899999999532 599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+..+.++.+||+||...+
T Consensus 67 ~~-~~~~~~~~~i~~~~q~~~~ 87 (255)
T PRK11231 67 SM-LSSRQLARRLALLPQHHLT 87 (255)
T ss_pred HH-CCHHHHhhheEEecccCCC
Confidence 42 2344567789999997643
No 141
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.4e-16 Score=155.07 Aligned_cols=85 Identities=20% Similarity=0.462 Sum_probs=74.7
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i 480 (510)
.+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+| ++|+|.+
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14247 3 KIEIRDLKVSFGQV---------------EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67 (250)
T ss_pred eEEEEeeEEEECCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence 48899999999542 599999999999999999999999999999999999974 7999999
Q ss_pred cCeecCCcccHHHhhccEEEEccCCC
Q 010435 481 YGFSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 481 ~g~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+|.++.. .+..+.|+.+||+||...
T Consensus 68 ~g~~i~~-~~~~~~~~~i~~v~q~~~ 92 (250)
T PRK14247 68 DGQDIFK-MDVIELRRRVQMVFQIPN 92 (250)
T ss_pred CCEECCc-CCHHHHhccEEEEeccCc
Confidence 9999853 345567889999999864
No 142
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.67 E-value=3e-16 Score=155.07 Aligned_cols=90 Identities=16% Similarity=0.281 Sum_probs=78.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++++++.|++.. ..+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.
T Consensus 17 ~~~i~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~ 83 (257)
T cd03288 17 GGEIKIHDLCVRYENNL-------------KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI 83 (257)
T ss_pred CceEEEEEEEEEeCCCC-------------CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence 45699999999996421 25999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. .+..+.|+.+|||||.+.+
T Consensus 84 ~i~~-~~~~~~~~~i~~v~q~~~l 106 (257)
T cd03288 84 DISK-LPLHTLRSRLSIILQDPIL 106 (257)
T ss_pred Ehhh-CCHHHHhhhEEEECCCCcc
Confidence 9853 3455678899999998654
No 143
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.66 E-value=2e-16 Score=155.51 Aligned_cols=87 Identities=22% Similarity=0.493 Sum_probs=74.8
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++++++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (250)
T PRK11264 3 AIEVKNLVKKFHGQ---------------TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI 67 (250)
T ss_pred cEEEeceEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 48899999999542 599999999999999999999999999999999999999999999999987
Q ss_pred CCcc-------cHHHhhccEEEEccCCCc
Q 010435 486 RSSV-------SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~-------~~~~~r~~iG~cpQ~~~L 507 (510)
.... +....|+.+||+||...+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred cccccccchhhHHHHhhhhEEEEecCccc
Confidence 4211 134567899999997643
No 144
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.9e-16 Score=156.86 Aligned_cols=87 Identities=23% Similarity=0.390 Sum_probs=76.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++++++.|++.. .+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 4 ~l~~~~l~~~~~~~~------------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKES------------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCCC------------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence 589999999996421 12599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.. ....+.++.+||+||..
T Consensus 72 ~~-~~~~~~~~~i~~v~q~~ 90 (277)
T PRK13642 72 TA-ENVWNLRRKIGMVFQNP 90 (277)
T ss_pred Cc-CCHHHHhcceEEEEECH
Confidence 53 34556788999999985
No 145
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.66 E-value=3.1e-16 Score=152.10 Aligned_cols=92 Identities=18% Similarity=0.355 Sum_probs=74.8
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++++++.|++.. ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~-----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 73 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-----------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP 73 (228)
T ss_pred ceEEEeeeEEEccCCC-----------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEE
Confidence 4689999999996421 01248999999999999999999999999999999999999999999999998
Q ss_pred cCCccc--HHHh-hccEEEEccCCCc
Q 010435 485 IRSSVS--MTNI-QKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~--~~~~-r~~iG~cpQ~~~L 507 (510)
+..... ..+. ++.+||+||...+
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 74 LHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred cccCCHHHHHHHHhheEEEEEccccc
Confidence 853211 1123 3679999998643
No 146
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.66 E-value=2.2e-16 Score=155.57 Aligned_cols=86 Identities=23% Similarity=0.415 Sum_probs=73.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++||++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFGIL---------------TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeCCe---------------eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4689999999542 5999999999999999999999999999999999999999999999999874
Q ss_pred Cc------------ccHHHhhccEEEEccCCCc
Q 010435 487 SS------------VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~------------~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+....|+.+||+||...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNL 98 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCccc
Confidence 21 1124568899999997643
No 147
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.66 E-value=1.8e-16 Score=154.71 Aligned_cols=88 Identities=25% Similarity=0.486 Sum_probs=74.3
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|+++. .+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 1 l~i~~l~~~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 68 (238)
T cd03249 1 IEFKNVSFRYPSRP------------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR 68 (238)
T ss_pred CeEEEEEEecCCCC------------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh
Confidence 36899999996421 125999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .+..+.++.+||+||.+.+
T Consensus 69 ~-~~~~~~~~~i~~~~q~~~~ 88 (238)
T cd03249 69 D-LNLRWLRSQIGLVSQEPVL 88 (238)
T ss_pred h-cCHHHHHhhEEEECCchhh
Confidence 2 2344567789999998643
No 148
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3e-16 Score=155.30 Aligned_cols=89 Identities=25% Similarity=0.406 Sum_probs=76.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
...++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 11 ~~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF---------------HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CceEEEEEEEEEeCCe---------------EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 4569999999999542 59999999999999999999999999999999999986 589999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++.. ..+....|+.+||+||...+
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 105 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTP 105 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCcc
Confidence 999999842 12345678899999998643
No 149
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.1e-16 Score=163.86 Aligned_cols=86 Identities=30% Similarity=0.539 Sum_probs=75.9
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...+++++++|.|++. .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.
T Consensus 17 ~~~l~l~~v~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~ 81 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ---------------HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV 81 (377)
T ss_pred CceEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 3469999999999542 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+ ....++.+|||||+..|
T Consensus 82 ~i~~---~~~~~r~ig~vfQ~~~l 102 (377)
T PRK11607 82 DLSH---VPPYQRPINMMFQSYAL 102 (377)
T ss_pred ECCC---CCHHHCCEEEEeCCCcc
Confidence 9843 23457899999998754
No 150
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.8e-16 Score=158.84 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=74.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|++... ....+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 3 i~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKLP----------TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecc
Confidence 789999999964310 1125999999999999999999999999999999999999999999999987752
Q ss_pred Cc-----------------------ccHHHhhccEEEEccCC
Q 010435 487 SS-----------------------VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~~-----------------------~~~~~~r~~iG~cpQ~~ 505 (510)
.. ....++|+.+|||||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~ 114 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFA 114 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCc
Confidence 10 13456788999999963
No 151
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.66 E-value=1.8e-16 Score=155.19 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=70.7
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCee
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGFS 484 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~~ 484 (510)
++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+. +|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 65 (243)
T TIGR01978 1 LKIKDLHVSVEDK---------------EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQD 65 (243)
T ss_pred CeEeeEEEEECCE---------------EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEe
Confidence 4689999999532 5999999999999999999999999999999999995 7999999999998
Q ss_pred cCCcccHHHhhccEEEEccCCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+.........+..+||+||.+.
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~ 87 (243)
T TIGR01978 66 LLELEPDERARAGLFLAFQYPE 87 (243)
T ss_pred cCCCCHHHhhccceEeeecccc
Confidence 8532111223456999999864
No 152
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.66 E-value=7e-17 Score=164.34 Aligned_cols=89 Identities=26% Similarity=0.432 Sum_probs=82.3
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..|+++|+++.|..+ +++++|+||++.+|+.++|+||+||||||+|++|-+++..++|.|.|||+
T Consensus 535 ~G~i~fsnvtF~Y~p~--------------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgq 600 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPG--------------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ 600 (790)
T ss_pred CCeEEEEEeEEecCCC--------------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCc
Confidence 4579999999999754 26999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
||+. ..+...|++||+|||+.+|
T Consensus 601 dIrn-vt~~SLRs~IGVVPQDtvL 623 (790)
T KOG0056|consen 601 DIRN-VTQSSLRSSIGVVPQDTVL 623 (790)
T ss_pred hHHH-HHHHHHHHhcCcccCccee
Confidence 9974 5678999999999999877
No 153
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.1e-16 Score=156.15 Aligned_cols=89 Identities=25% Similarity=0.378 Sum_probs=76.3
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
...++++++++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|
T Consensus 22 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 86 (271)
T PRK14238 22 KVVFDTQNLNLWYGED---------------HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86 (271)
T ss_pred ceEEEEeeeEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE
Confidence 4479999999999642 58999999999999999999999999999999999987 699999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++.. .......++.+||+||+..+
T Consensus 87 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred EECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 999998842 12345668899999998643
No 154
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.66 E-value=2.8e-16 Score=148.73 Aligned_cols=89 Identities=27% Similarity=0.435 Sum_probs=75.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCe
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF 483 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~ 483 (510)
.+++++++|.|++.. +...+.+++++||++++||+++|+|+|||||||++++|+|+. +|++|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~---------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP---------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC---------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE
Confidence 488999999996421 001136999999999999999999999999999999999999 999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. ...++.+|||||.+.+
T Consensus 74 ~~~~----~~~~~~i~~~~q~~~~ 93 (194)
T cd03213 74 PLDK----RSFRKIIGYVPQDDIL 93 (194)
T ss_pred eCch----HhhhheEEEccCcccC
Confidence 8842 2667899999998643
No 155
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3e-16 Score=151.77 Aligned_cols=86 Identities=29% Similarity=0.527 Sum_probs=77.8
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+.++++++.|+++ ..+++++|+++++||+++|+|||||||||++++|+|+++|++|+|.++|.++
T Consensus 3 ~i~~~~l~~~y~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPGR--------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCCC--------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeec
Confidence 57899999999754 2699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
....+..++|+++|+++|+.
T Consensus 69 ~~~~~~~~~~~~vG~VfQnp 88 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNP 88 (235)
T ss_pred cchhhHHHhhcceEEEEECc
Confidence 53356788999999999975
No 156
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3e-16 Score=156.56 Aligned_cols=85 Identities=34% Similarity=0.568 Sum_probs=73.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|+++.|++. +.+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYPDG--------------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc
Confidence 6799999999632 15999999999999999999999999999999999999999999999999984
Q ss_pred C-cccHHHhhccEEEEccCC
Q 010435 487 S-SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~-~~~~~~~r~~iG~cpQ~~ 505 (510)
. ......+++.+||+||..
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~ 87 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNP 87 (275)
T ss_pred cccchHHHHHhheEEEeeCh
Confidence 2 122345688999999974
No 157
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.7e-16 Score=159.39 Aligned_cols=96 Identities=22% Similarity=0.329 Sum_probs=78.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||+|.|+.+.+. . ++++.+.||+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~--~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~ 78 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGL--F---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD 78 (327)
T ss_pred ceEEEeeeEEEEcCCCCc--c---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 468999999999643110 0 01123479999999999999999999999999999999999999999999999999
Q ss_pred cCCc--ccHHHhhccEEEEccCC
Q 010435 485 IRSS--VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~~--~~~~~~r~~iG~cpQ~~ 505 (510)
+.+. .+.+..|+++||+||+.
T Consensus 79 l~~~~~~~~~~~r~~i~~v~Q~~ 101 (327)
T PRK11308 79 LLKADPEAQKLLRQKIQIVFQNP 101 (327)
T ss_pred cCcCCHHHHHHHhCCEEEEEcCc
Confidence 8532 23456788999999986
No 158
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3e-16 Score=155.20 Aligned_cols=89 Identities=26% Similarity=0.387 Sum_probs=75.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--C---CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--p---t~G~i 478 (510)
+..++++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+ | ++|+|
T Consensus 10 ~~~l~i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i 74 (259)
T PRK14274 10 QEVYQINGMNLWYGQH---------------HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM 74 (259)
T ss_pred CceEEEeeEEEEECCe---------------eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE
Confidence 4569999999999642 59999999999999999999999999999999999987 3 68999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++|.++.. ..+..+.|+.+||+||+..+
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 75 NYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred EECCEEccccccCHHHHhhceEEEecCCcc
Confidence 999998842 12345668899999998643
No 159
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.2e-16 Score=163.75 Aligned_cols=88 Identities=28% Similarity=0.498 Sum_probs=80.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..|+++|++..|++++ ++|+++||+|++||.+||+|+|||||||.+++|.+++. .+|+|+|||.
T Consensus 349 ~~~I~F~dV~f~y~~k~--------------~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKR--------------KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeCCCC--------------ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCe
Confidence 44699999999997642 49999999999999999999999999999999999999 9999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|++. .+.+.+|+.|||+||+..|
T Consensus 414 dik~-~~~~SlR~~Ig~VPQd~~L 436 (591)
T KOG0057|consen 414 DIKE-VSLESLRQSIGVVPQDSVL 436 (591)
T ss_pred eHhh-hChHHhhhheeEeCCcccc
Confidence 9974 5788999999999999876
No 160
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.66 E-value=2.2e-16 Score=150.10 Aligned_cols=86 Identities=28% Similarity=0.386 Sum_probs=71.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--ccCCcceEEEcCee
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGFS 484 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--~~pt~G~i~i~g~~ 484 (510)
++++|++|.|++. .+++++||++++||+++|+|+|||||||++++|+|+ .+|++|++.++|.+
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~ 65 (200)
T cd03217 1 LEIKDLHVSVGGK---------------EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED 65 (200)
T ss_pred CeEEEEEEEeCCE---------------EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEE
Confidence 3688999999632 599999999999999999999999999999999999 58999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+......+..|+.+||+||...+
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~ 88 (200)
T cd03217 66 ITDLPPEERARLGIFLAFQYPPE 88 (200)
T ss_pred CCcCCHHHHhhCcEEEeecChhh
Confidence 85322222335679999997643
No 161
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.66 E-value=2.3e-16 Score=162.73 Aligned_cols=84 Identities=20% Similarity=0.368 Sum_probs=74.5
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc--ceEEEcCe
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG--GDALIYGF 483 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~--G~i~i~g~ 483 (510)
.+++++++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYGAN---------------TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEECCe---------------EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCE
Confidence 58999999999642 59999999999999999999999999999999999999999 99999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+ ....++.+||++|+..|
T Consensus 70 ~~~~---~~~~~r~ig~vfQ~~~l 90 (362)
T TIGR03258 70 DLTH---APPHKRGLALLFQNYAL 90 (362)
T ss_pred ECCC---CCHHHCCEEEEECCccc
Confidence 9842 22346789999998754
No 162
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.4e-16 Score=154.32 Aligned_cols=88 Identities=22% Similarity=0.400 Sum_probs=75.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEE
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL 479 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~ 479 (510)
..++++++++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|+
T Consensus 6 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 70 (254)
T PRK14273 6 AIIETENLNLFYTDF---------------KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI 70 (254)
T ss_pred ceEEEeeeEEEeCCc---------------eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE
Confidence 469999999999542 589999999999999999999999999999999999997 589999
Q ss_pred EcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 480 IYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 480 i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
++|.++.. ..+..+.|+.+||+||+..+
T Consensus 71 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 71 YEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ECCEecccccccHHHHhhceEEEeecccc
Confidence 99998742 12345678899999998643
No 163
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.66 E-value=1.7e-16 Score=154.78 Aligned_cols=99 Identities=29% Similarity=0.408 Sum_probs=73.6
Q ss_pred EEEeeeEEEcCCCCCcccc------cccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435 407 VQIRGLVKTFPGTRKIGCC------CKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~------~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i 480 (510)
++++|++|.|....+.+.. +..++...+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 80 (236)
T cd03267 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80 (236)
T ss_pred CceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3567777777653211000 0011223446999999999999999999999999999999999999999999999
Q ss_pred cCeecCCcccHHHhhccEEEEc-cCCCc
Q 010435 481 YGFSIRSSVSMTNIQKSIGVCP-QVTLF 507 (510)
Q Consensus 481 ~g~~i~~~~~~~~~r~~iG~cp-Q~~~L 507 (510)
+|.++.. .....++.+||+| |.+.+
T Consensus 81 ~g~~~~~--~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 81 AGLVPWK--RRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred CCEEccc--cchhhcccEEEEcCCcccc
Confidence 9988632 2345678899998 54433
No 164
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.9e-16 Score=154.98 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=70.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYGGK---------------PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeCCe---------------eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 6889999999542 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .++.+||+||...+
T Consensus 67 ~------~~~~~~~v~q~~~~ 81 (255)
T PRK11248 67 G------PGAERGVVFQNEGL 81 (255)
T ss_pred C------CCCcEEEEeCCCcc
Confidence 2 13468999998643
No 165
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=3.9e-17 Score=156.05 Aligned_cols=95 Identities=28% Similarity=0.405 Sum_probs=70.9
Q ss_pred eEEEeeeEEEcCCCCC-cccccc-----cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE
Q 010435 406 AVQIRGLVKTFPGTRK-IGCCCK-----CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~-~~~~~~-----~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~ 479 (510)
.+.++||+|.|.-..+ +|..+. .+|++...||+|+||+|++||++|++|+||||||||+|||||++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 4677788887753211 110000 1233455799999999999999999999999999999999999999999999
Q ss_pred EcCeecCCcccHHHhhccEEEEc
Q 010435 480 IYGFSIRSSVSMTNIQKSIGVCP 502 (510)
Q Consensus 480 i~g~~i~~~~~~~~~r~~iG~cp 502 (510)
++|++-.+ +.++.-+++|++.
T Consensus 83 V~G~~Pf~--~~~~~~~~~~~v~ 103 (325)
T COG4586 83 VNGKDPFR--RREEYLRSIGLVM 103 (325)
T ss_pred ecCcCcch--hHHHHHHHHHHHh
Confidence 99998642 3445556666664
No 166
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.2e-16 Score=154.90 Aligned_cols=88 Identities=26% Similarity=0.464 Sum_probs=75.3
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
...++++|++|.|+++ .+++|+||++++||++||+|+||||||||+++|+|+++ |++|+|
T Consensus 18 ~~~l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (267)
T PRK14237 18 EIALSTKDLHVYYGKK---------------EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82 (267)
T ss_pred CeEEEEeeEEEEECCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE
Confidence 4479999999999532 59999999999999999999999999999999999986 589999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCC
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~ 506 (510)
.++|.++.. ..+....|+.+||+||...
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 83 LYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred EECCEEcccccCChHHHhcceEEEecCCc
Confidence 999999842 1234566889999999754
No 167
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.66 E-value=1.3e-16 Score=149.01 Aligned_cols=79 Identities=29% Similarity=0.550 Sum_probs=69.9
Q ss_pred EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (510)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~ 488 (510)
+++++|.|+++ .+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus 2 ~~~l~~~~~~~---------------~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~- 65 (180)
T cd03214 2 VENLSVGYGGR---------------TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS- 65 (180)
T ss_pred eeEEEEEECCe---------------eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc-
Confidence 67899999542 59999999999999999999999999999999999999999999999999853
Q ss_pred ccHHHhhccEEEEcc
Q 010435 489 VSMTNIQKSIGVCPQ 503 (510)
Q Consensus 489 ~~~~~~r~~iG~cpQ 503 (510)
.+..+.++.+||+||
T Consensus 66 ~~~~~~~~~i~~~~q 80 (180)
T cd03214 66 LSPKELARKIAYVPQ 80 (180)
T ss_pred CCHHHHHHHHhHHHH
Confidence 334566778999998
No 168
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3e-16 Score=152.97 Aligned_cols=86 Identities=28% Similarity=0.527 Sum_probs=74.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++.+ .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~--------------~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYDPGR--------------PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeCCCC--------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh
Confidence 36789999995321 4899999999999999999999999999999999999999999999999885
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .+..+.|+.+||+||...+
T Consensus 67 ~-~~~~~~~~~i~~~~q~~~~ 86 (236)
T cd03253 67 E-VTLDSLRRAIGVVPQDTVL 86 (236)
T ss_pred h-CCHHHHHhhEEEECCCChh
Confidence 3 3455678889999998643
No 169
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.65 E-value=3.1e-16 Score=151.25 Aligned_cols=90 Identities=21% Similarity=0.387 Sum_probs=75.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++.. +++.+++++||++++||+++|+|+|||||||++++|+|+++|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-----------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCCC-----------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH
Confidence 67899999996421 1236999999999999999999999999999999999999999999999999884
Q ss_pred Ccc--cHHHhhccEEEEccCCCc
Q 010435 487 SSV--SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~--~~~~~r~~iG~cpQ~~~L 507 (510)
... +....++.+||+||+..+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~ 93 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNL 93 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhh
Confidence 211 123567899999998643
No 170
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.65 E-value=2.9e-16 Score=170.92 Aligned_cols=87 Identities=25% Similarity=0.509 Sum_probs=79.5
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++++ .+++|+||++++||.++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus 333 ~~I~~~~vsf~Y~~~~--------------~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPGSP--------------PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCCCC--------------ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3599999999996431 48999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ . .+++|+++|||||++.|
T Consensus 399 i~~-~-~~~lr~~i~~V~Q~~~l 419 (529)
T TIGR02868 399 VSS-L-QDELRRRISVFAQDAHL 419 (529)
T ss_pred hhh-H-HHHHHhheEEEccCccc
Confidence 974 4 78899999999999865
No 171
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.65 E-value=5.6e-16 Score=158.25 Aligned_cols=100 Identities=17% Similarity=0.248 Sum_probs=78.7
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++||+|.|+.+.... . +.+.++.+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~ 83 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQ-W-FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGK 83 (331)
T ss_pred CceEEEeCeEEEECCCCccc-c-ccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCE
Confidence 45799999999996421100 0 000112347999999999999999999999999999999999999999999999999
Q ss_pred ecCCcc--cHHHhhccEEEEccCC
Q 010435 484 SIRSSV--SMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~--~~~~~r~~iG~cpQ~~ 505 (510)
++.... +....|+++||+||..
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~ 107 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDP 107 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCc
Confidence 985321 2345688999999985
No 172
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4.7e-16 Score=155.71 Aligned_cols=87 Identities=20% Similarity=0.382 Sum_probs=75.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc---ceEEEc
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIY 481 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~---G~i~i~ 481 (510)
..+++++++|.|++.. ..+++++||++++||++||+|+||||||||+++|+|+++|++ |+|+++
T Consensus 4 ~~l~i~~l~~~~~~~~-------------~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~ 70 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK-------------KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVD 70 (282)
T ss_pred ceEEEEEEEEEcCCCC-------------ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEEC
Confidence 3689999999996421 159999999999999999999999999999999999999998 899999
Q ss_pred CeecCCcccHHHhhccEEEEccCC
Q 010435 482 GFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 482 g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
|.++.. ....+.++.+|||||..
T Consensus 71 g~~~~~-~~~~~~~~~ig~v~q~~ 93 (282)
T PRK13640 71 GITLTA-KTVWDIREKVGIVFQNP 93 (282)
T ss_pred CEECCc-CCHHHHHhheEEEEECH
Confidence 999853 33456678999999975
No 173
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=4.1e-16 Score=154.17 Aligned_cols=87 Identities=23% Similarity=0.424 Sum_probs=74.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i 480 (510)
.++++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.+
T Consensus 4 ~l~i~~v~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~ 68 (258)
T PRK14241 4 RIDVKDLNIYYGSF---------------HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL 68 (258)
T ss_pred cEEEeeEEEEECCE---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE
Confidence 58899999999642 599999999999999999999999999999999999974 7999999
Q ss_pred cCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++.. ..+....|+.+||+||+..+
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 69 DGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred CCEeccccccChHHHhcceEEEcccccc
Confidence 9998742 12234678899999997543
No 174
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.65 E-value=4e-16 Score=154.87 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=74.8
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++|+|.|++.... ++++.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~------~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 75 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLF------GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDL 75 (265)
T ss_pred eEEEEeEEEEeccCccc------cccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence 47899999999632100 000123699999999999999999999999999999999999999999999999988
Q ss_pred CCcc--cHHHhhccEEEEccCC
Q 010435 486 RSSV--SMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~--~~~~~r~~iG~cpQ~~ 505 (510)
.... +....|+.+||+||..
T Consensus 76 ~~~~~~~~~~~~~~i~~v~q~~ 97 (265)
T TIGR02769 76 YQLDRKQRRAFRRDVQLVFQDS 97 (265)
T ss_pred cccCHHHHHHHhhceEEEecCh
Confidence 5311 1234678899999975
No 175
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4.7e-16 Score=162.01 Aligned_cols=102 Identities=25% Similarity=0.368 Sum_probs=77.1
Q ss_pred eEEEeeeEEEcCCCCCcc------cccc---cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435 406 AVQIRGLVKTFPGTRKIG------CCCK---CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~------~~~~---~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G 476 (510)
.|+++||+|.|++..... ...+ .++.+...+++++||++++||+++|+|+||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 589999999997642100 0000 0122334589999999999999999999999999999999999999999
Q ss_pred eEEEcCeecCCcc--cHHHh-hccEEEEccCCCc
Q 010435 477 DALIYGFSIRSSV--SMTNI-QKSIGVCPQVTLF 507 (510)
Q Consensus 477 ~i~i~g~~i~~~~--~~~~~-r~~iG~cpQ~~~L 507 (510)
+|+++|.++.... +..+. ++++||+||+..+
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 9999999985311 11222 4689999998644
No 176
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.8e-16 Score=153.51 Aligned_cols=87 Identities=23% Similarity=0.408 Sum_probs=74.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i 480 (510)
.++++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+| ++|++++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 67 (249)
T PRK14253 3 KFNIENLDLFYGEN---------------QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTM 67 (249)
T ss_pred eEEEeccEEEECCe---------------eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence 47899999999642 599999999999999999999999999999999999986 5999999
Q ss_pred cCeecCCcccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++....+....|+.+||+||.+.+
T Consensus 68 ~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 68 DGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred CCEEcccccchHHHHhheeEEecCCCc
Confidence 999874222345678899999998653
No 177
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.65 E-value=5e-16 Score=153.55 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=72.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++++++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 5 PLLSVRGLTKLYGPR---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred ceEEEeeeEEEcCCc---------------eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence 358999999999642 59999999999999999999999999999999999999999999999988
Q ss_pred -----cCCccc--HHH-hhccEEEEccCC
Q 010435 485 -----IRSSVS--MTN-IQKSIGVCPQVT 505 (510)
Q Consensus 485 -----i~~~~~--~~~-~r~~iG~cpQ~~ 505 (510)
+..... ..+ .++.+||+||..
T Consensus 70 ~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 70 GQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred ccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 642111 112 356799999985
No 178
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.5e-16 Score=152.70 Aligned_cols=87 Identities=22% Similarity=0.398 Sum_probs=74.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--C---CcceEE
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDAL 479 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--p---t~G~i~ 479 (510)
..++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++ | ++|+|.
T Consensus 3 ~~l~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~ 67 (252)
T PRK14256 3 NKVKLEQLNVHFGKN---------------HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL 67 (252)
T ss_pred cEEEEEEEEEEeCCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE
Confidence 358999999999632 59999999999999999999999999999999999986 4 689999
Q ss_pred EcCeecCCc-ccHHHhhccEEEEccCCC
Q 010435 480 IYGFSIRSS-VSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 480 i~g~~i~~~-~~~~~~r~~iG~cpQ~~~ 506 (510)
++|.++... .+....|+.+||+||+..
T Consensus 68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 68 LDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred ECCEEcccccCChHHhhccEEEEecCCC
Confidence 999998421 123466889999999854
No 179
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.3e-16 Score=152.70 Aligned_cols=88 Identities=23% Similarity=0.449 Sum_probs=75.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEE
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL 479 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~ 479 (510)
+.++++|+++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.
T Consensus 3 ~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~ 67 (251)
T PRK14270 3 IKMESKNLNLWYGEK---------------QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67 (251)
T ss_pred cEEEEEEeEEEECCe---------------eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE
Confidence 468999999999532 599999999999999999999999999999999999875 799999
Q ss_pred EcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 480 IYGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 480 i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
++|.++... .+....++.+||+||+..+
T Consensus 68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred ECCEecccccccHHHHHhheEEEecCCCc
Confidence 999998421 1234568889999998654
No 180
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.2e-16 Score=152.68 Aligned_cols=87 Identities=23% Similarity=0.439 Sum_probs=73.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i 480 (510)
.++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.+
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14240 3 KISVKDLDLFYGDF---------------QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLL 67 (250)
T ss_pred eEEEEEEEEEECCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 47899999999642 599999999999999999999999999999999998763 6999999
Q ss_pred cCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++.. ..+....|+.+||+||...+
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 68 DGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred CCEEccccccchHHHhccEEEEecCCcc
Confidence 9999842 12344668899999998643
No 181
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.65 E-value=4.6e-16 Score=174.38 Aligned_cols=89 Identities=17% Similarity=0.359 Sum_probs=80.8
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++.. +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.+||.|
T Consensus 450 ~~I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDG-------------PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCCCC-------------ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 4699999999996431 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++. .+.+++|+++|||||++.|
T Consensus 517 i~~-~~~~~lr~~i~~v~Q~~~l 538 (686)
T TIGR03797 517 LAG-LDVQAVRRQLGVVLQNGRL 538 (686)
T ss_pred cCc-CCHHHHHhccEEEccCCcc
Confidence 974 5788999999999999865
No 182
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.6e-16 Score=153.21 Aligned_cols=89 Identities=26% Similarity=0.443 Sum_probs=75.1
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i 478 (510)
.+.++++++++.|+++ .+++|+||++++||++||+|+||||||||+++|+|+.+| ++|+|
T Consensus 10 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 74 (258)
T PRK14268 10 QPQIKVENLNLWYGEK---------------QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV 74 (258)
T ss_pred ceeEEEeeeEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE
Confidence 3469999999999532 599999999999999999999999999999999999985 89999
Q ss_pred EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++... .+....|+.+||+||...+
T Consensus 75 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 75 SIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred EECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 9999987421 1234567889999998643
No 183
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.8e-16 Score=152.39 Aligned_cols=87 Identities=21% Similarity=0.443 Sum_probs=74.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i~i 480 (510)
.++++++++.|++. .+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|.+
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i 68 (251)
T PRK14251 4 IISAKDVHLSYGNY---------------EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF 68 (251)
T ss_pred eEEEEeeEEEECCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE
Confidence 58999999999532 59999999999999999999999999999999999987 48999999
Q ss_pred cCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++.. ..+....|+.+||++|++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 69 EGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred CCEEcccccchHHHhhccEEEEecCCcc
Confidence 9998742 12345668899999998643
No 184
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.2e-16 Score=152.65 Aligned_cols=87 Identities=23% Similarity=0.404 Sum_probs=74.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i 480 (510)
.+++++++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.+
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i 67 (250)
T PRK14262 3 IIEIENFSAYYGEK---------------KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYF 67 (250)
T ss_pred eEEEEeeEEEeCCc---------------eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE
Confidence 58899999999532 599999999999999999999999999999999999874 8999999
Q ss_pred cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++... .+..+.++.+||+||++.+
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 68 KGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred CCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 99987421 1234567899999998754
No 185
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=6.5e-16 Score=154.19 Aligned_cols=89 Identities=24% Similarity=0.329 Sum_probs=76.1
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i 478 (510)
...++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|
T Consensus 19 ~~~l~i~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i 83 (276)
T PRK14271 19 APAMAAVNLTLGFAGK---------------TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV 83 (276)
T ss_pred CcEEEEeeEEEEECCE---------------EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE
Confidence 3468999999999642 599999999999999999999999999999999999986 69999
Q ss_pred EEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++....+...+++.+||+||...+
T Consensus 84 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 84 LLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred EECCEEccccchhHHHhhheEEeccCCcc
Confidence 99999884322334668899999997643
No 186
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.6e-16 Score=154.38 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=71.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|+++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWRNG--------------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEecCC--------------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh
Confidence 58999999999532 1599999999999999999999999999999999999999999999999987
Q ss_pred CCcccHHHhhccEEEEccCCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
.. ...++.+||+||+..
T Consensus 72 ~~----~~~~~~i~~v~q~~~ 88 (272)
T PRK15056 72 RQ----ALQKNLVAYVPQSEE 88 (272)
T ss_pred HH----hhccceEEEeccccc
Confidence 31 122346999999854
No 187
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.64 E-value=5.3e-16 Score=154.40 Aligned_cols=87 Identities=28% Similarity=0.437 Sum_probs=76.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|+++.|++.. ..+++|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++
T Consensus 2 ~i~~~nls~~~~~~~-------------~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTEGG-------------NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEh
Confidence 378999999996421 158999999999999999999999999999999999998 789999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+..++|+.+|||||+..|
T Consensus 68 ~~-~~~~~lr~~i~~v~q~~~l 88 (275)
T cd03289 68 NS-VPLQKWRKAFGVIPQKVFI 88 (275)
T ss_pred hh-CCHHHHhhhEEEECCCccc
Confidence 53 3566789999999998754
No 188
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.64 E-value=5.5e-16 Score=154.27 Aligned_cols=84 Identities=24% Similarity=0.332 Sum_probs=73.4
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC--------cceE
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--------GGDA 478 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt--------~G~i 478 (510)
++++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|+ +|+|
T Consensus 2 l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i 66 (272)
T PRK13547 2 LTADHLHVARRHR---------------AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV 66 (272)
T ss_pred eEEEEEEEEECCE---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE
Confidence 6889999999542 5999999999999999999999999999999999999998 9999
Q ss_pred EEcCeecCCcccHHHhhccEEEEccCCC
Q 010435 479 LIYGFSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 479 ~i~g~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
.++|.++.. .+..+.++.+||+||...
T Consensus 67 ~~~g~~~~~-~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 67 TLNGEPLAA-IDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EECCEEccc-CCHHHHHhhcEEecccCC
Confidence 999998742 234556778999999763
No 189
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.64 E-value=4.4e-16 Score=152.02 Aligned_cols=82 Identities=23% Similarity=0.424 Sum_probs=71.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|+++ .+++++||++++||++||+|+|||||||++++|+|+++|++|++.++|.++.
T Consensus 1 i~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFGSF---------------QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEECCe---------------eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 3688999999642 5999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhccEEEEccCCC
Q 010435 487 SSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~ 506 (510)
. ....++.+|||||...
T Consensus 66 ~---~~~~~~~i~~~~q~~~ 82 (237)
T TIGR00968 66 R---VHARDRKIGFVFQHYA 82 (237)
T ss_pred c---CChhhcCEEEEecChh
Confidence 2 2234778999999763
No 190
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=7.6e-16 Score=151.65 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=74.9
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--C---CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--p---t~G~i 478 (510)
+..+++++++|.|+++ .+++++||++.+||+++|+|+||||||||+++|+|+.+ | ++|+|
T Consensus 3 ~~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 67 (252)
T PRK14255 3 KKIITSSDVHLFYGKF---------------EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV 67 (252)
T ss_pred cceEEEEeEEEEECCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE
Confidence 3468999999999632 59999999999999999999999999999999999875 4 58999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++.. ..+....++.+||+||+..+
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 68 SLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred EEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 999998842 12345667899999998643
No 191
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.64 E-value=5.8e-16 Score=152.05 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=71.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCee
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGFS 484 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~~ 484 (510)
++++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+. +|++|+|.++|.+
T Consensus 2 i~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 66 (248)
T PRK09580 2 LSIKDLHVSVEDK---------------AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 66 (248)
T ss_pred eEEEEEEEEeCCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCc
Confidence 6899999999642 5999999999999999999999999999999999995 6999999999998
Q ss_pred cCCcccHHHhhccEEEEccCCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+.........|+.+||++|+..
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~ 88 (248)
T PRK09580 67 LLELSPEDRAGEGIFMAFQYPV 88 (248)
T ss_pred cccCCHHHHhhcceEEEecCch
Confidence 7532112233467999999863
No 192
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.8e-16 Score=152.65 Aligned_cols=89 Identities=21% Similarity=0.432 Sum_probs=75.9
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
...++++|+++.|+++ .+++++||++++||+++|+|+|||||||++++|+|+.+ |++|+|
T Consensus 23 ~~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i 87 (272)
T PRK14236 23 QTALEVRNLNLFYGDK---------------QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI 87 (272)
T ss_pred CcEEEEEEEEEEECCe---------------eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE
Confidence 4579999999999542 58999999999999999999999999999999999987 489999
Q ss_pred EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++... .+....|+.+||+||+..+
T Consensus 88 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 88 RLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred EECCEECcccccCHHHHhccEEEEecCCcc
Confidence 9999998421 2344668899999998643
No 193
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3e-16 Score=144.96 Aligned_cols=86 Identities=23% Similarity=0.488 Sum_probs=75.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
|+.+|++..-.++ ..++++||++++||+.+|+||||||||||+|.|+|...|++|++.++|.+..
T Consensus 2 i~a~nls~~~~Gr---------------~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLAGR---------------RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEeecc---------------eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChh
Confidence 6788888777553 5899999999999999999999999999999999999999999999999986
Q ss_pred CcccHHHhhccEEEEccCCCcc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLFS 508 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L~ 508 (510)
+ +...+.-++-++.||...|.
T Consensus 67 ~-~~~~~lA~~raVlpQ~s~la 87 (259)
T COG4559 67 S-WPPEELARHRAVLPQNSSLA 87 (259)
T ss_pred h-CCHHHHHHHhhhcccCcccc
Confidence 3 55666667789999987653
No 194
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.64 E-value=5.4e-16 Score=170.22 Aligned_cols=89 Identities=27% Similarity=0.409 Sum_probs=80.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++. ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 337 ~~i~~~~v~f~y~~~~-------------~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPDQP-------------QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCCCC-------------CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 4699999999996531 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+.+|||||++.|
T Consensus 404 i~~-~~~~~~r~~i~~v~Q~~~l 425 (574)
T PRK11160 404 IAD-YSEAALRQAISVVSQRVHL 425 (574)
T ss_pred hhh-CCHHHHHhheeEEcccchh
Confidence 974 5678899999999998755
No 195
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.7e-16 Score=167.26 Aligned_cols=91 Identities=23% Similarity=0.416 Sum_probs=84.2
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..|+.+|+++.|+.+ |++.+++|+||+|++||++||+||||+||||..++|-.++.|++|+|.+||.
T Consensus 463 ~G~IeF~~VsFaYP~R------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 4579999999999875 3567999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
||++ -+...+|++||+|-|+++|
T Consensus 531 ~i~~-~~~~~lr~~Ig~V~QEPvL 553 (716)
T KOG0058|consen 531 PISD-INHKYLRRKIGLVGQEPVL 553 (716)
T ss_pred ehhh-cCHHHHHHHeeeeecccee
Confidence 9974 6778899999999999987
No 196
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=4.8e-16 Score=151.22 Aligned_cols=83 Identities=27% Similarity=0.512 Sum_probs=72.3
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++. .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 1 l~~~~l~~~~~~~---------------~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYGGF---------------VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 3688999999542 5999999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ....++.+|||||+..+
T Consensus 66 ~---~~~~~~~i~~~~q~~~~ 83 (232)
T cd03300 66 N---LPPHKRPVNTVFQNYAL 83 (232)
T ss_pred c---CChhhcceEEEeccccc
Confidence 3 12346789999998654
No 197
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.63 E-value=8.2e-16 Score=152.36 Aligned_cols=88 Identities=24% Similarity=0.422 Sum_probs=74.7
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEc
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIY 481 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~ 481 (510)
..++++||++.|++. .+++++||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++
T Consensus 3 ~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~ 67 (262)
T PRK09984 3 TIIRVEKLAKTFNQH---------------QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELL 67 (262)
T ss_pred cEEEEeeEEEEeCCe---------------EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEEC
Confidence 368999999999642 5999999999999999999999999999999999999986 4999999
Q ss_pred CeecCCc----ccHHHhhccEEEEccCCCc
Q 010435 482 GFSIRSS----VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 482 g~~i~~~----~~~~~~r~~iG~cpQ~~~L 507 (510)
|.++... .+..+.++.+||+||...+
T Consensus 68 g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 68 GRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred CEecccccccchhHHHHHhheEEEcccccc
Confidence 9987421 1235567889999998643
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.63 E-value=5.8e-16 Score=159.47 Aligned_cols=72 Identities=29% Similarity=0.443 Sum_probs=64.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHh----hccEEEEccCCCc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI----QKSIGVCPQVTLF 507 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~----r~~iG~cpQ~~~L 507 (510)
.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. .+..+. |+.+|||||...|
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~-~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK-QSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHHHHHHHhCcEEEEECCCcC
Confidence 69999999999999999999999999999999999999999999999999853 233344 6799999998765
No 199
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.63 E-value=7.5e-16 Score=151.81 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=72.0
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee-
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS- 484 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~- 484 (510)
.++++|+++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---------------KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeCCc---------------eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccc
Confidence 58999999999542 58999999999999999999999999999999999999999999999976
Q ss_pred ----cCCcccHH----HhhccEEEEccCCC
Q 010435 485 ----IRSSVSMT----NIQKSIGVCPQVTL 506 (510)
Q Consensus 485 ----i~~~~~~~----~~r~~iG~cpQ~~~ 506 (510)
+.. .... ..++.+||+||.+.
T Consensus 68 ~~~~~~~-~~~~~~~~~~~~~i~~~~q~~~ 96 (253)
T TIGR02323 68 AELELYQ-LSEAERRRLMRTEWGFVHQNPR 96 (253)
T ss_pred ccccccc-CCHHHHHHhhhcceEEEEeCcc
Confidence 532 1111 23467999999863
No 200
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.63 E-value=4.8e-16 Score=174.95 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=80.5
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++.. +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.+||.|
T Consensus 476 ~~I~~~~vsf~y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSPLE-------------PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCCCC-------------CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 4699999999997531 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+++|||||++.|
T Consensus 543 i~~-~~~~~lr~~i~~v~Q~~~l 564 (710)
T TIGR03796 543 REE-IPREVLANSVAMVDQDIFL 564 (710)
T ss_pred HHH-CCHHHHHhheeEEecCChh
Confidence 963 5678899999999998754
No 201
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=5.3e-16 Score=148.61 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=68.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++. . .++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 1 i~~~~l~~~~~~~---------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSYGEQ---------------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEeCCE---------------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence 4688999999531 2 3999999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ...++.+||+||...+
T Consensus 64 ~~---~~~~~~i~~~~q~~~~ 81 (211)
T cd03298 64 AA---PPADRPVSMLFQENNL 81 (211)
T ss_pred cC---CHhHccEEEEeccccc
Confidence 31 2346789999997643
No 202
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=9.8e-16 Score=150.81 Aligned_cols=87 Identities=23% Similarity=0.438 Sum_probs=75.0
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~i 480 (510)
.+++++++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+|+ +|+|++
T Consensus 4 ~l~~~~l~~~~~~~---------------~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 68 (251)
T PRK14249 4 KIKIRGVNFFYHKH---------------QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL 68 (251)
T ss_pred eEEEEEEEEEECCe---------------eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEE
Confidence 58899999999532 5999999999999999999999999999999999999997 699999
Q ss_pred cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++... .+....|+.+||+||...+
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 69 DNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred CCEEccccccChHHhhceEEEEecCCcc
Confidence 99987421 2345668899999998643
No 203
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=8.1e-16 Score=151.45 Aligned_cols=87 Identities=21% Similarity=0.371 Sum_probs=74.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~i 480 (510)
.++++|++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+++|+ +|+|.+
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 68 (252)
T PRK14272 4 LLSAQDVNIYYGDK---------------QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL 68 (252)
T ss_pred EEEEeeeEEEECCE---------------EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEE
Confidence 58899999999532 5999999999999999999999999999999999999875 799999
Q ss_pred cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++... .+....|+.+||+||+..+
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 69 DGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred CCEEcccCccCHHHhhceeEEEeccCcc
Confidence 99988421 1234668889999998643
No 204
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.63 E-value=7.3e-16 Score=166.58 Aligned_cols=86 Identities=31% Similarity=0.519 Sum_probs=73.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFPGV---------------KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeCCe---------------EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 58999999999542 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
......+..++.+||+||+..
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~ 89 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELN 89 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchh
Confidence 432222234678999999753
No 205
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=9.9e-16 Score=150.95 Aligned_cols=89 Identities=25% Similarity=0.446 Sum_probs=75.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--C---CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--p---t~G~i 478 (510)
...++++++++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|
T Consensus 4 ~~~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 68 (253)
T PRK14261 4 EIILSTKNLNLWYGEK---------------HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI 68 (253)
T ss_pred cceEEEeeeEEEECCe---------------eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence 3468999999999542 59999999999999999999999999999999999975 3 48999
Q ss_pred EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++... .+..+.++.+||+||...+
T Consensus 69 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 69 LYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred EECCEEccccccchhhhhceEEEEecCCcc
Confidence 9999998431 1345668889999998644
No 206
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1e-15 Score=153.45 Aligned_cols=88 Identities=20% Similarity=0.432 Sum_probs=75.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
++.+++++++|.|++. .+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|
T Consensus 37 ~~~l~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I 101 (285)
T PRK14254 37 ETVIEARDLNVFYGDE---------------QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL 101 (285)
T ss_pred CceEEEEEEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence 4569999999999542 59999999999999999999999999999999999987 689999
Q ss_pred EEcCeecCCc-ccHHHhhccEEEEccCCC
Q 010435 479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~ 506 (510)
.++|.++... .+....++.+||+||+..
T Consensus 102 ~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 102 TFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred EECCEEccccccchHhhhccEEEEecCCc
Confidence 9999987421 123456889999999864
No 207
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.63 E-value=8.3e-16 Score=166.57 Aligned_cols=87 Identities=29% Similarity=0.389 Sum_probs=74.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
+.++++|++|.|+++ .+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus 4 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 68 (510)
T PRK09700 4 PYISMAGIGKSFGPV---------------HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN 68 (510)
T ss_pred ceEEEeeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE
Confidence 358999999999542 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+......+..++.+||+||+..
T Consensus 69 i~~~~~~~~~~~~i~~v~q~~~ 90 (510)
T PRK09700 69 YNKLDHKLAAQLGIGIIYQELS 90 (510)
T ss_pred CCCCCHHHHHHCCeEEEeeccc
Confidence 8532222234567999999864
No 208
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.63 E-value=7.6e-16 Score=148.88 Aligned_cols=80 Identities=29% Similarity=0.503 Sum_probs=69.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~l~~v~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRFGKQ---------------TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEECCE---------------EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc
Confidence 3688999999532 5999999999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCC
Q 010435 487 SSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~ 506 (510)
. . . ++.+||+||.+.
T Consensus 66 ~-~---~-~~~~~~~~q~~~ 80 (223)
T TIGR03740 66 R-K---D-LHKIGSLIESPP 80 (223)
T ss_pred c-c---c-cccEEEEcCCCC
Confidence 2 1 1 357999999764
No 209
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=9.9e-16 Score=144.68 Aligned_cols=85 Identities=28% Similarity=0.394 Sum_probs=72.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCe
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF 483 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~ 483 (510)
.++++++++.|++.. +.+.+++++||++++||+++|+|+|||||||++++|+|+. +|++|++.++|.
T Consensus 3 ~l~~~~l~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~ 71 (192)
T cd03232 3 VLTWKNLNYTVPVKG-----------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR 71 (192)
T ss_pred EEEEeeeEEEecCCC-----------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE
Confidence 478999999996421 0125999999999999999999999999999999999986 489999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
++. .+.++.+||++|.+.
T Consensus 72 ~~~-----~~~~~~i~~~~q~~~ 89 (192)
T cd03232 72 PLD-----KNFQRSTGYVEQQDV 89 (192)
T ss_pred ehH-----HHhhhceEEecccCc
Confidence 872 456788999999753
No 210
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1e-15 Score=151.91 Aligned_cols=87 Identities=23% Similarity=0.489 Sum_probs=74.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceEE
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDAL 479 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i~ 479 (510)
..+++++++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|+
T Consensus 9 ~~l~i~~v~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 73 (264)
T PRK14243 9 TVLRTENLNVYYGSF---------------LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT 73 (264)
T ss_pred eEEEEeeeEEEECCE---------------EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE
Confidence 468999999999532 58999999999999999999999999999999999976 4899999
Q ss_pred EcCeecCC-cccHHHhhccEEEEccCCC
Q 010435 480 IYGFSIRS-SVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 480 i~g~~i~~-~~~~~~~r~~iG~cpQ~~~ 506 (510)
++|.++.. ..+..+.|+.+||+||+..
T Consensus 74 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 74 FHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred ECCEEccccccChHHHhhhEEEEccCCc
Confidence 99998742 1234566889999999864
No 211
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=7.6e-16 Score=152.15 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=73.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC-
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG- 482 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g- 482 (510)
.+.+.+++++|.|+++ .+++|+||++.+||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~ 72 (257)
T PRK14246 8 EDVFNISRLYLYINDK---------------AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK 72 (257)
T ss_pred hhheeeeeEEEecCCc---------------eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCE
Confidence 4569999999999643 599999999999999999999999999999999999999997777766
Q ss_pred -----eecCCcccHHHhhccEEEEccCCCc
Q 010435 483 -----FSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 483 -----~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++.. .+..+.|+.+||+||.+.+
T Consensus 73 ~~~~g~~~~~-~~~~~~~~~i~~~~q~~~~ 101 (257)
T PRK14246 73 VLYFGKDIFQ-IDAIKLRKEVGMVFQQPNP 101 (257)
T ss_pred EEECCccccc-CCHHHHhcceEEEccCCcc
Confidence 44421 2345678899999998654
No 212
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.2e-15 Score=151.48 Aligned_cols=89 Identities=19% Similarity=0.341 Sum_probs=75.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i 478 (510)
...+++++++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|
T Consensus 14 ~~~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i 78 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---------------QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78 (265)
T ss_pred CceEEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE
Confidence 4569999999999642 599999999999999999999999999999999999875 79999
Q ss_pred EEcCeecC---CcccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIR---SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~---~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++. ...+..+.++.+||+||+..+
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 110 (265)
T PRK14252 79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNP 110 (265)
T ss_pred EEcCccccccccccCHHHHhccEEEEccCCcC
Confidence 99998763 112234668899999998643
No 213
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.63 E-value=6.4e-16 Score=145.64 Aligned_cols=71 Identities=28% Similarity=0.449 Sum_probs=63.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC-cccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~-~~~~~~~r~~iG~cpQ~~ 505 (510)
.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ..+....++.+||+||..
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence 59999999999999999999999999999999999999999999999998741 123445678899999985
No 214
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=9.9e-16 Score=151.51 Aligned_cols=88 Identities=24% Similarity=0.465 Sum_probs=75.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEE
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL 479 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~ 479 (510)
..+++++++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.
T Consensus 6 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~ 70 (259)
T PRK14260 6 PAIKVKDLSFYYNTS---------------KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVD 70 (259)
T ss_pred ceEEEEEEEEEECCe---------------EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEE
Confidence 368999999999542 599999999999999999999999999999999999985 489999
Q ss_pred EcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 480 IYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 480 i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
++|.++.. ..+.+..++.+||+||...+
T Consensus 71 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 71 FFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred ECCEeccccccchHhhhhheEEEeccccc
Confidence 99998742 12345667899999998654
No 215
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.2e-15 Score=149.99 Aligned_cols=88 Identities=25% Similarity=0.440 Sum_probs=73.7
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC---ccC--CcceEE
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI---TPV--TGGDAL 479 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~---~~p--t~G~i~ 479 (510)
+.+++++++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.
T Consensus 2 ~~l~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 66 (250)
T PRK14245 2 VKIDARDVNFWYGDF---------------HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66 (250)
T ss_pred cEEEEEEEEEEECCE---------------eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEE
Confidence 358899999999542 599999999999999999999999999999999997 455 589999
Q ss_pred EcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 480 IYGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 480 i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
++|.++... .+....|+.+||+||...+
T Consensus 67 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 67 IDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred ECCEecccccccHHHHhhheEEEecCCcc
Confidence 999998421 1245678899999998643
No 216
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=8.1e-16 Score=149.93 Aligned_cols=82 Identities=22% Similarity=0.473 Sum_probs=71.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++ ++++++||++++||+++|+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus 1 l~~~~l~~~~~~----------------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDWKE----------------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEeCC----------------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcC
Confidence 367899999953 3899999999999999999999999999999999999999999999999884
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ...++.+|||||.+.+
T Consensus 65 ~~---~~~~~~i~~~~q~~~~ 82 (235)
T cd03299 65 NL---PPEKRDISYVPQNYAL 82 (235)
T ss_pred cC---ChhHcCEEEEeecCcc
Confidence 31 2236789999998643
No 217
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.63 E-value=7.7e-16 Score=173.19 Aligned_cols=88 Identities=19% Similarity=0.355 Sum_probs=80.0
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++ ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|+++|.|
T Consensus 472 ~~I~~~~vsf~y~~~--------------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGYG--------------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCCC--------------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEE
Confidence 469999999999632 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+++|||||++.|
T Consensus 538 i~~-~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 538 LKD-IDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred HHH-cCHHHHHHheEEEecCcee
Confidence 963 5678899999999999765
No 218
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.1e-15 Score=165.31 Aligned_cols=87 Identities=28% Similarity=0.433 Sum_probs=75.5
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
+.++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus 3 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 67 (501)
T PRK11288 3 PYLSFDGIGKTFPGV---------------KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE 67 (501)
T ss_pred ceEEEeeeEEEECCE---------------EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 368999999999542 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+......+..|+.+||+||+..
T Consensus 68 i~~~~~~~~~~~~i~~v~q~~~ 89 (501)
T PRK11288 68 MRFASTTAALAAGVAIIYQELH 89 (501)
T ss_pred CCCCCHHHHHhCCEEEEEechh
Confidence 8532223456788999999753
No 219
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.2e-15 Score=153.06 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=74.7
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
++.++++++++.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|
T Consensus 37 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I 101 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF---------------EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL 101 (286)
T ss_pred ceEEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE
Confidence 4568999999999542 59999999999999999999999999999999999864 499999
Q ss_pred EEcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++... .+....|+.+||+||++.+
T Consensus 102 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 102 MFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 9999987421 1233568899999998643
No 220
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.62 E-value=6.1e-16 Score=173.78 Aligned_cols=90 Identities=20% Similarity=0.429 Sum_probs=80.8
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++. ++.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.+||.|
T Consensus 477 ~~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP------------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 4699999999997531 1258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+..|+++|||||++.|
T Consensus 545 i~~-~~~~~lr~~i~~v~Q~~~l 566 (711)
T TIGR00958 545 LVQ-YDHHYLHRQVALVGQEPVL 566 (711)
T ss_pred HHh-cCHHHHHhhceEEecCccc
Confidence 963 5678899999999998865
No 221
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.62 E-value=9.7e-16 Score=147.60 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=71.7
Q ss_pred EEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (510)
Q Consensus 408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~ 487 (510)
.+.++.+.|++. ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 2 ~~~~~~~~~~~~--------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 67 (218)
T cd03290 2 QVTNGYFSWGSG--------------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESE 67 (218)
T ss_pred eeeeeEEecCCC--------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccc
Confidence 577888999643 159999999999999999999999999999999999999999999999988742
Q ss_pred cc---cHHHhhccEEEEccCCCc
Q 010435 488 SV---SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 488 ~~---~~~~~r~~iG~cpQ~~~L 507 (510)
.. .....|+.+||+||+..+
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~ 90 (218)
T cd03290 68 PSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred ccccccchhhcceEEEEcCCCcc
Confidence 11 122356789999998643
No 222
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.5e-15 Score=150.31 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=75.7
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i 478 (510)
+..+.++++++.|++. .+++++||++++||+++|+|+||||||||+++|+|+++| ++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i 70 (261)
T PRK14263 6 PIVMDCKLDKIFYGNF---------------MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV 70 (261)
T ss_pred CceEEEEeEEEEeCCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE
Confidence 4578999999999532 599999999999999999999999999999999999986 79999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++.. ......+|+.+||+||...+
T Consensus 71 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 71 HFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EECCEeccccccchHhhhhceEEEecCCcc
Confidence 999999842 11234567889999998654
No 223
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=5.3e-16 Score=154.29 Aligned_cols=85 Identities=21% Similarity=0.419 Sum_probs=70.3
Q ss_pred EEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (510)
Q Consensus 408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~ 487 (510)
.+++++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 26 ~~~~~~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~ 90 (269)
T cd03294 26 SKEEILKKTGQT---------------VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAA 90 (269)
T ss_pred hhhhhhhhcCCc---------------eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccc
Confidence 456788888542 58999999999999999999999999999999999999999999999998743
Q ss_pred cc--cHHHh-hccEEEEccCCCc
Q 010435 488 SV--SMTNI-QKSIGVCPQVTLF 507 (510)
Q Consensus 488 ~~--~~~~~-r~~iG~cpQ~~~L 507 (510)
.. +..+. ++.+||+||++.+
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 91 MSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred cChhhhhhhhcCcEEEEecCccc
Confidence 11 11122 4689999998644
No 224
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.62 E-value=8.9e-16 Score=147.36 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=69.6
Q ss_pred EEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (510)
Q Consensus 408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~ 487 (510)
+++|++|.|++ .++++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus 2 ~~~~l~~~~~~-----------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYEH-----------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeCC-----------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc
Confidence 67899999942 3579999999999999999999999999999999999999999999999843
Q ss_pred cccHHHhhccEEEEccCCCc
Q 010435 488 SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 488 ~~~~~~~r~~iG~cpQ~~~L 507 (510)
....++.+||+||...+
T Consensus 65 ---~~~~~~~i~~v~q~~~~ 81 (213)
T TIGR01277 65 ---LAPYQRPVSMLFQENNL 81 (213)
T ss_pred ---CChhccceEEEeccCcc
Confidence 22457889999998643
No 225
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.62 E-value=1.4e-15 Score=164.72 Aligned_cols=86 Identities=29% Similarity=0.431 Sum_probs=74.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++|.|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 74 (510)
T PRK15439 10 PLLCARSISKQYSGV---------------EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP 74 (510)
T ss_pred ceEEEEeEEEEeCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 469999999999642 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHH-hhccEEEEccCCC
Q 010435 485 IRSSVSMTN-IQKSIGVCPQVTL 506 (510)
Q Consensus 485 i~~~~~~~~-~r~~iG~cpQ~~~ 506 (510)
+... ...+ .++.+||+||+..
T Consensus 75 ~~~~-~~~~~~~~~i~~v~q~~~ 96 (510)
T PRK15439 75 CARL-TPAKAHQLGIYLVPQEPL 96 (510)
T ss_pred CCCC-CHHHHHhCCEEEEeccCc
Confidence 8532 2233 3457999999864
No 226
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.6e-15 Score=151.20 Aligned_cols=89 Identities=18% Similarity=0.412 Sum_probs=75.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i 478 (510)
...++++++++.|++. .+++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|
T Consensus 18 ~~~l~~~nl~~~~~~~---------------~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (274)
T PRK14265 18 HSVFEVEGVKVFYGGF---------------LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL 82 (274)
T ss_pred CceEEEeeEEEEeCCe---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence 3479999999999642 599999999999999999999999999999999999863 68999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++.. .......|+.+||+||+..+
T Consensus 83 ~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 83 LYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred EECCEecccccchhHHHhhcEEEEccCCcc
Confidence 999998742 11234568899999998643
No 227
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.6e-15 Score=149.30 Aligned_cols=88 Identities=20% Similarity=0.368 Sum_probs=73.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cC---CcceEE
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PV---TGGDAL 479 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~p---t~G~i~ 479 (510)
..+++++++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+. +| ++|+|.
T Consensus 4 ~~l~~~~l~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~ 68 (252)
T PRK14239 4 PILQVSDLSVYYNKK---------------KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV 68 (252)
T ss_pred ceEEEEeeEEEECCe---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE
Confidence 358999999999642 5999999999999999999999999999999999985 46 589999
Q ss_pred EcCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 480 IYGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 480 i~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
++|.++... .+....|+.+||+||+..+
T Consensus 69 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 69 YNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred ECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 999988421 1234567889999998643
No 228
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.1e-15 Score=165.41 Aligned_cols=87 Identities=24% Similarity=0.431 Sum_probs=74.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcC
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYG 482 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g 482 (510)
..++++|++|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|+++|
T Consensus 4 ~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g 68 (506)
T PRK13549 4 YLLEMKNITKTFGGV---------------KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEG 68 (506)
T ss_pred ceEEEeeeEEEeCCe---------------EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 358999999999532 599999999999999999999999999999999999996 899999999
Q ss_pred eecCCcccHHHhhccEEEEccCCC
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
.++......+..|+.+||+||...
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~ 92 (506)
T PRK13549 69 EELQASNIRDTERAGIAIIHQELA 92 (506)
T ss_pred EECCCCCHHHHHHCCeEEEEeccc
Confidence 998532212234678999999753
No 229
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=8e-16 Score=142.42 Aligned_cols=87 Identities=28% Similarity=0.553 Sum_probs=78.2
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc-----ceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-----GDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~-----G~i 478 (510)
...+++++|++.|+.. .||+|||++++++++++|+||+||||||+++++.++....+ |+|
T Consensus 5 ~~~~~~~~l~~yYg~~---------------~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v 69 (253)
T COG1117 5 IPAIEVRDLNLYYGDK---------------HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV 69 (253)
T ss_pred cceeEecceeEEECch---------------hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE
Confidence 4578999999999643 69999999999999999999999999999999999988775 999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCC
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~ 505 (510)
.++|.+|.+ ..+.-++|+++|+|+|.+
T Consensus 70 ~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 70 LLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred EECCeeccCCCCCHHHHHHHheeeccCC
Confidence 999999964 346889999999999965
No 230
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.5e-15 Score=154.93 Aligned_cols=89 Identities=15% Similarity=0.303 Sum_probs=73.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc----CCcceEEEc
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIY 481 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~----pt~G~i~i~ 481 (510)
.++++||++.|+.+. +.+.||+|+||++++||++||+|+||||||||+++|+|+++ |++|+|.++
T Consensus 3 ~L~v~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~ 71 (326)
T PRK11022 3 LLNVDKLSVHFGDES-----------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFN 71 (326)
T ss_pred eEEEeCeEEEECCCC-----------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEEC
Confidence 478999999996531 12469999999999999999999999999999999999997 489999999
Q ss_pred CeecCCcc--cHHHhh-ccEEEEccCC
Q 010435 482 GFSIRSSV--SMTNIQ-KSIGVCPQVT 505 (510)
Q Consensus 482 g~~i~~~~--~~~~~r-~~iG~cpQ~~ 505 (510)
|.++.... +..+.| +.+||+||..
T Consensus 72 G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 98 (326)
T PRK11022 72 GQDLQRISEKERRNLVGAEVAMIFQDP 98 (326)
T ss_pred CEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 99985321 222333 4799999976
No 231
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2e-15 Score=152.74 Aligned_cols=88 Identities=25% Similarity=0.491 Sum_probs=76.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
+..++++|+++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|
T Consensus 43 ~~~l~i~nl~~~~~~~---------------~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I 107 (305)
T PRK14264 43 DAKLSVEDLDVYYGDD---------------HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV 107 (305)
T ss_pred CceEEEEEEEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 4579999999999642 59999999999999999999999999999999999986 689999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCC
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~ 506 (510)
+++|.++.. ..+...+|+.+|||||...
T Consensus 108 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 108 ELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred EECCEEcccccccHHHHhhceEEEccCCc
Confidence 999998742 1234567889999999864
No 232
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.62 E-value=1.1e-15 Score=166.44 Aligned_cols=89 Identities=25% Similarity=0.477 Sum_probs=80.0
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++++ +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 319 ~~i~~~~v~f~y~~~~-------------~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~ 385 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRR-------------APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVP 385 (529)
T ss_pred CeEEEEEEEEECCCCC-------------cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 3699999999997531 258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+++|||||++.|
T Consensus 386 i~~-~~~~~lr~~i~~v~Q~~~l 407 (529)
T TIGR02857 386 LAD-ADADSWRDQIAWVPQHPFL 407 (529)
T ss_pred hhh-CCHHHHHhheEEEcCCCcc
Confidence 964 5678899999999998754
No 233
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.62 E-value=1.3e-15 Score=151.54 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=75.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|++.... +++.++.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~~~nl~~~~~~~~~~------~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~ 76 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLS------GKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76 (268)
T ss_pred eEEEeceEEEecCCccc------cccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 47899999999631000 000012699999999999999999999999999999999999999999999999987
Q ss_pred CCcc--cHHHhhccEEEEccCC
Q 010435 486 RSSV--SMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~--~~~~~r~~iG~cpQ~~ 505 (510)
.... +....++.+||+||..
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~ 98 (268)
T PRK10419 77 AKLNRAQRKAFRRDIQMVFQDS 98 (268)
T ss_pred cccChhHHHHHHhcEEEEEcCh
Confidence 4311 2245678999999985
No 234
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.6e-15 Score=149.11 Aligned_cols=87 Identities=25% Similarity=0.452 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i~i 480 (510)
.++++++++.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.+
T Consensus 3 ~l~~~~v~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 67 (250)
T PRK14266 3 RIEVENLNTYFDDA---------------HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL 67 (250)
T ss_pred EEEEEeEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEE
Confidence 47899999999532 59999999999999999999999999999999999864 48999999
Q ss_pred cCeecCCc-ccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRSS-VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~~-~~~~~~r~~iG~cpQ~~~L 507 (510)
+|.++... .+..+.++.+|||||+..+
T Consensus 68 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 68 DGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred CCEEcccccccHHHHhhheEEEecCCcc
Confidence 99988421 2355678899999998643
No 235
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.62 E-value=1.1e-15 Score=158.11 Aligned_cols=101 Identities=14% Similarity=0.312 Sum_probs=76.1
Q ss_pred EEEeeeEEEcCCCCCcc------cccc---cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435 407 VQIRGLVKTFPGTRKIG------CCCK---CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~------~~~~---~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~ 477 (510)
++++||+|.|+.+.... +..+ .++.+.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 46788888887643200 0000 13445667999999999999999999999999999999999999999999
Q ss_pred EEEcCe----ecCCc--ccHHHhh-ccEEEEccCCCc
Q 010435 478 ALIYGF----SIRSS--VSMTNIQ-KSIGVCPQVTLF 507 (510)
Q Consensus 478 i~i~g~----~i~~~--~~~~~~r-~~iG~cpQ~~~L 507 (510)
|+++|. ++... .+..+.| +.+||+||+..|
T Consensus 81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 999996 44211 1233344 589999998765
No 236
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.61 E-value=1.3e-15 Score=147.53 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=73.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc---CCcceEEEcC
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG 482 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i~i~g 482 (510)
.+.+++++++|++.. ..+.+++++||++++||+++|+|||||||||++++|+|+++ |++|++.++|
T Consensus 3 ~~~~~~~~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g 71 (226)
T cd03234 3 VLPWWDVGLKAKNWN-----------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG 71 (226)
T ss_pred cceeecceeeeecCc-----------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECC
Confidence 356889999996531 02369999999999999999999999999999999999999 9999999999
Q ss_pred eecCCcccHHHhhccEEEEccCCC
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
.++. ....|+.+||+||.+.
T Consensus 72 ~~~~----~~~~~~~i~~~~q~~~ 91 (226)
T cd03234 72 QPRK----PDQFQKCVAYVRQDDI 91 (226)
T ss_pred EECC----hHHhcccEEEeCCCCc
Confidence 9873 2356889999999864
No 237
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.61 E-value=1.4e-15 Score=150.07 Aligned_cols=81 Identities=21% Similarity=0.397 Sum_probs=71.4
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC----CcceEEEc
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIY 481 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p----t~G~i~i~ 481 (510)
.++++|++|.| +. .+++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|+++
T Consensus 4 ~l~~~~l~~~~-~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~ 67 (254)
T PRK10418 4 QIELRNIALQA-AQ---------------PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLD 67 (254)
T ss_pred EEEEeCeEEEe-cc---------------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEEC
Confidence 58999999999 22 489999999999999999999999999999999999999 99999999
Q ss_pred CeecCCcccHHHhhccEEEEccCC
Q 010435 482 GFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 482 g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
|.++.. .+..++.+||+||..
T Consensus 68 g~~i~~---~~~~~~~i~~v~q~~ 88 (254)
T PRK10418 68 GKPVAP---CALRGRKIATIMQNP 88 (254)
T ss_pred Ceeccc---cccccceEEEEecCC
Confidence 998842 223346799999985
No 238
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.61 E-value=1.4e-15 Score=170.69 Aligned_cols=89 Identities=25% Similarity=0.482 Sum_probs=80.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++.. ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.|
T Consensus 462 ~~I~~~~vsf~Y~~~~-------------~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQE-------------TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCCCC-------------ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 4699999999996531 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+++|||||++.|
T Consensus 529 l~~-~~~~~lr~~i~~v~Q~~~l 550 (694)
T TIGR03375 529 IRQ-IDPADLRRNIGYVPQDPRL 550 (694)
T ss_pred hhh-CCHHHHHhccEEECCChhh
Confidence 963 5678899999999998754
No 239
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.61 E-value=1.7e-15 Score=139.71 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=66.1
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++. +.+++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.
T Consensus 1 i~~~~~~~~~~~~--------------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATPDG--------------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcCCC--------------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---
Confidence 3678999999532 15999999999999999999999999999999999999999999999762
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.+||+||+..+
T Consensus 64 ---------~~i~~~~q~~~~ 75 (166)
T cd03223 64 ---------EDLLFLPQRPYL 75 (166)
T ss_pred ---------ceEEEECCCCcc
Confidence 579999998654
No 240
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.61 E-value=1.3e-15 Score=167.83 Aligned_cols=89 Identities=21% Similarity=0.455 Sum_probs=79.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++.. ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 340 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPGKE-------------VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCCCC-------------CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 3599999999996531 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.+ .+.++.|+.+|||||++.|
T Consensus 407 i~~-~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 407 LRD-YTLASLRNQVALVSQNVHL 428 (582)
T ss_pred hhh-cCHHHHHhhceEEccCcee
Confidence 863 5677889999999998754
No 241
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.6e-15 Score=153.58 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=73.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc----CCcceEEEc
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIY 481 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~----pt~G~i~i~ 481 (510)
.++++||+|.|+.+. +.+.|++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++
T Consensus 3 ~L~v~~l~~~y~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~ 71 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-----------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFD 71 (330)
T ss_pred eEEEeeeEEEEeCCC-----------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEEC
Confidence 588999999996421 12369999999999999999999999999999999999997 589999999
Q ss_pred CeecCCcc--cHHHh-hccEEEEccCCC
Q 010435 482 GFSIRSSV--SMTNI-QKSIGVCPQVTL 506 (510)
Q Consensus 482 g~~i~~~~--~~~~~-r~~iG~cpQ~~~ 506 (510)
|.++.... +.... ++.+||+||+..
T Consensus 72 g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 72 DIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred CEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 99985311 12222 357999999763
No 242
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.6e-15 Score=148.72 Aligned_cols=88 Identities=17% Similarity=0.435 Sum_probs=75.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-----cceEE
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDAL 479 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-----~G~i~ 479 (510)
..++++|++|.|++. .+++|+||++++||+++|+|+||||||||+++|+|+.+|+ +|++.
T Consensus 6 ~~l~~~nl~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~ 70 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---------------KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVE 70 (261)
T ss_pred ceEEEeeEEEEeCCe---------------eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEE
Confidence 368999999999542 5999999999999999999999999999999999999986 89999
Q ss_pred EcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 480 IYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 480 i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
++|.++.. ..+...+|+.+||+||+..+
T Consensus 71 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 71 FFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred ECCEEhhccccchHHhhccEEEEecCCcc
Confidence 99998731 12345678899999997643
No 243
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.61 E-value=3e-15 Score=152.87 Aligned_cols=91 Identities=21% Similarity=0.358 Sum_probs=75.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALI 480 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i 480 (510)
...++++||+|.|+.+. +.+.||+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+
T Consensus 10 ~~~L~i~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~ 78 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD-----------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF 78 (330)
T ss_pred CceEEEeCeEEEEecCC-----------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE
Confidence 34689999999996421 1346999999999999999999999999999999999999996 999999
Q ss_pred cCeecCCc--ccHHHhh-ccEEEEccCC
Q 010435 481 YGFSIRSS--VSMTNIQ-KSIGVCPQVT 505 (510)
Q Consensus 481 ~g~~i~~~--~~~~~~r-~~iG~cpQ~~ 505 (510)
+|.++... .+..+.| +.+||+||+.
T Consensus 79 ~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 79 NGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred CCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 99998532 1233344 4899999986
No 244
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.60 E-value=2.4e-15 Score=148.04 Aligned_cols=86 Identities=27% Similarity=0.400 Sum_probs=72.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--ccCCcceEEEcC
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYG 482 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--~~pt~G~i~i~g 482 (510)
..++++++++.|++. .+++++||++++||++||+|+||||||||+++|+|+ ++|++|+++++|
T Consensus 6 ~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g 70 (252)
T CHL00131 6 PILEIKNLHASVNEN---------------EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG 70 (252)
T ss_pred ceEEEEeEEEEeCCE---------------EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECC
Confidence 469999999999532 599999999999999999999999999999999998 589999999999
Q ss_pred eecCCcccHHHhhc-cEEEEccCCC
Q 010435 483 FSIRSSVSMTNIQK-SIGVCPQVTL 506 (510)
Q Consensus 483 ~~i~~~~~~~~~r~-~iG~cpQ~~~ 506 (510)
.++... +.+..++ .++++||...
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~q~~~ 94 (252)
T CHL00131 71 ESILDL-EPEERAHLGIFLAFQYPI 94 (252)
T ss_pred EEcccC-ChhhhheeeEEEEecccc
Confidence 988532 2223333 5889999753
No 245
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.60 E-value=2e-15 Score=143.94 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=65.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++||+|.|+++.. ..+.+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~----------~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQ----------ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---- 66 (204)
T ss_pred CEEeEEEEecCCCCc----------cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----
Confidence 468999999964310 002599999999999999999999999999999999999999999999988
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++|||||...+
T Consensus 67 ----------~i~~~~q~~~l 77 (204)
T cd03250 67 ----------SIAYVSQEPWI 77 (204)
T ss_pred ----------EEEEEecCchh
Confidence 58999998643
No 246
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.60 E-value=2.3e-15 Score=135.48 Aligned_cols=70 Identities=27% Similarity=0.370 Sum_probs=63.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++. .+++++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--- 62 (144)
T cd03221 1 IELENLSKTYGGK---------------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--- 62 (144)
T ss_pred CEEEEEEEEECCc---------------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---
Confidence 3678999999542 5999999999999999999999999999999999999999999999883
Q ss_pred CcccHHHhhccEEEEcc
Q 010435 487 SSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ 503 (510)
+.++|+||
T Consensus 63 ---------~~i~~~~~ 70 (144)
T cd03221 63 ---------VKIGYFEQ 70 (144)
T ss_pred ---------EEEEEEcc
Confidence 36888888
No 247
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.60 E-value=2.3e-15 Score=166.14 Aligned_cols=88 Identities=19% Similarity=0.362 Sum_probs=79.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++++++.|+++ ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.|
T Consensus 339 ~~i~~~~v~f~y~~~--------------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRDD--------------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCCC--------------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEE
Confidence 359999999999642 148999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+..|+++|||||++.|
T Consensus 405 i~~-~~~~~l~~~i~~v~Q~~~l 426 (592)
T PRK10790 405 LSS-LSHSVLRQGVAMVQQDPVV 426 (592)
T ss_pred hhh-CCHHHHHhheEEEccCCcc
Confidence 963 5788999999999998765
No 248
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.60 E-value=2.4e-15 Score=164.27 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=79.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++ ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 321 ~~i~~~~v~f~y~~~--------------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 321 QTLELRNVTFAYQDN--------------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred ceEEEEEEEEEeCCC--------------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 369999999999642 148999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+++||+||++.|
T Consensus 387 ~~~-~~~~~~~~~i~~v~q~~~l 408 (547)
T PRK10522 387 VTA-EQPEDYRKLFSAVFTDFHL 408 (547)
T ss_pred CCC-CCHHHHhhheEEEecChhH
Confidence 863 5677899999999998754
No 249
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.60 E-value=6.9e-16 Score=139.27 Aligned_cols=93 Identities=25% Similarity=0.343 Sum_probs=77.4
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
-++++||+|.|..+... .++..+.||+.+||++++||..+++|.||+||||+.+||+|+++||+|++.+||+.+
T Consensus 4 LLeV~nLsKtF~~~~~l------f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L 77 (267)
T COG4167 4 LLEVRNLSKTFRYRTGL------FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL 77 (267)
T ss_pred hhhhhhhhhhhhhhhhh------hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc
Confidence 46789999999765321 234466899999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.- .+-....++|-+++|++
T Consensus 78 ~~-~Dy~~R~k~IRMiFQDp 96 (267)
T COG4167 78 HF-GDYSFRSKRIRMIFQDP 96 (267)
T ss_pred cc-cchHhhhhheeeeecCC
Confidence 42 34444457899999975
No 250
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=2.5e-15 Score=146.15 Aligned_cols=81 Identities=15% Similarity=0.309 Sum_probs=69.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|++. . .++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHHL---------------P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECCc---------------c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecC
Confidence 6799999999531 1 2899999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ...++.+||+||...+
T Consensus 65 ~~---~~~~~~i~~~~q~~~~ 82 (232)
T PRK10771 65 TT---PPSRRPVSMLFQENNL 82 (232)
T ss_pred cC---ChhhccEEEEeccccc
Confidence 21 1235789999998643
No 251
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.3e-15 Score=148.19 Aligned_cols=85 Identities=19% Similarity=0.374 Sum_probs=71.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceEEEc
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALIY 481 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i~i~ 481 (510)
-+++++++.|++. .+++++||++.+||+++|+|+||||||||+++|+|+.+ |++|+|.++
T Consensus 6 ~~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 70 (251)
T PRK14244 6 ASVKNLNLWYGSK---------------QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDID 70 (251)
T ss_pred EEeeeEEEEECCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEEC
Confidence 4688999999532 59999999999999999999999999999999999986 479999999
Q ss_pred CeecCCc-ccHHHhhccEEEEccCCC
Q 010435 482 GFSIRSS-VSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 482 g~~i~~~-~~~~~~r~~iG~cpQ~~~ 506 (510)
|.++... .+...+|+.+||+||+..
T Consensus 71 g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 71 GIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred CEehHhcccchHHHhhhEEEEecCcc
Confidence 9987321 122356889999999864
No 252
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.3e-15 Score=151.65 Aligned_cols=91 Identities=22% Similarity=0.379 Sum_probs=77.1
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-----CCcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-----pt~G~i 478 (510)
...++++|+++.|.+. ...+++|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|
T Consensus 78 ~~~i~~~nls~~y~~~-------------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I 144 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-------------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144 (329)
T ss_pred CceEEEEeeEEEecCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 4579999999999642 1259999999999999999999999999999999999986 579999
Q ss_pred EEcCeecCC-cccHHHhhccEEEEccCCCc
Q 010435 479 LIYGFSIRS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 479 ~i~g~~i~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|.++.. .....++|+.+|||||...+
T Consensus 145 ~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 145 YFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred EECCEEccccccchHhhhccEEEEecCCcc
Confidence 999999852 12345678999999998654
No 253
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.60 E-value=1.8e-15 Score=169.76 Aligned_cols=89 Identities=18% Similarity=0.345 Sum_probs=80.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++.. +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 454 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAPDS-------------PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 4699999999996431 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+.+|||||++.|
T Consensus 521 i~~-~~~~~~r~~i~~v~q~~~l 542 (694)
T TIGR01846 521 LAI-ADPAWLRRQMGVVLQENVL 542 (694)
T ss_pred hhh-CCHHHHHHhCeEEccCCee
Confidence 963 5678899999999998755
No 254
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.59 E-value=2.8e-15 Score=145.00 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=71.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc--Ce-
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY--GF- 483 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~--g~- 483 (510)
++++|++|.|++..+ .+..+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~--------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ--------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC--------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCc
Confidence 678999999964210 0001369999999999999999999999999999999999999999999998 42
Q ss_pred -ecCCc--ccHHHh-hccEEEEccCCCc
Q 010435 484 -SIRSS--VSMTNI-QKSIGVCPQVTLF 507 (510)
Q Consensus 484 -~i~~~--~~~~~~-r~~iG~cpQ~~~L 507 (510)
++... .+..+. ++.+||+||...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEeccccc
Confidence 44211 111223 4579999998643
No 255
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.59 E-value=3.3e-15 Score=147.01 Aligned_cols=75 Identities=25% Similarity=0.459 Sum_probs=67.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--- 65 (251)
T PRK09544 4 LVSLENVSVSFGQR---------------RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--- 65 (251)
T ss_pred EEEEeceEEEECCc---------------eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---
Confidence 58999999999642 599999999999999999999999999999999999999999999976
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+||+||+..+
T Consensus 66 ---------~~~i~~v~q~~~~ 78 (251)
T PRK09544 66 ---------KLRIGYVPQKLYL 78 (251)
T ss_pred ---------ccCEEEecccccc
Confidence 2369999998643
No 256
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.59 E-value=3.2e-15 Score=161.61 Aligned_cols=85 Identities=28% Similarity=0.451 Sum_probs=72.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcCee
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFS 484 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g~~ 484 (510)
++++|++|.|++. .+++++||++++||++||+|+||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 2 l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~ 66 (500)
T TIGR02633 2 LEMKGIVKTFGGV---------------KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP 66 (500)
T ss_pred EEEEeEEEEeCCe---------------EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 6899999999532 599999999999999999999999999999999999987 79999999999
Q ss_pred cCCcccHHHhhccEEEEccCCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+......+..++.+||+||...
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~ 88 (500)
T TIGR02633 67 LKASNIRDTERAGIVIIHQELT 88 (500)
T ss_pred CCCCCHHHHHhCCEEEEeeccc
Confidence 8532222234678999999753
No 257
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.59 E-value=3.8e-15 Score=162.67 Aligned_cols=89 Identities=22% Similarity=0.431 Sum_probs=79.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++.. +.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 315 ~~i~~~~v~~~y~~~~-------------~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPGGK-------------KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCCCC-------------ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 4699999999996431 258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+..|+.+|||||++.+
T Consensus 382 i~~-~~~~~~~~~i~~v~q~~~l 403 (544)
T TIGR01842 382 LKQ-WDRETFGKHIGYLPQDVEL 403 (544)
T ss_pred hhh-CCHHHHhhheEEecCCccc
Confidence 863 4567889999999998754
No 258
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.59 E-value=4e-15 Score=140.85 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=66.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++++|.|+++ .++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+++++|.++.
T Consensus 2 l~~~~l~~~~~~~---------------~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIEQK---------------NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEECCc---------------EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccC
Confidence 6789999999531 345 499999999999999999999999999999999999999999999874
Q ss_pred CcccHHHhhccEEEEccCC
Q 010435 487 SSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~ 505 (510)
. .. ++.++|+||..
T Consensus 66 ~---~~--~~~~~~~~~~~ 79 (195)
T PRK13541 66 N---IA--KPYCTYIGHNL 79 (195)
T ss_pred h---hh--hhhEEeccCCc
Confidence 2 11 45699999965
No 259
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.7e-15 Score=161.84 Aligned_cols=81 Identities=30% Similarity=0.521 Sum_probs=70.4
Q ss_pred eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc
Q 010435 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV 489 (510)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~ 489 (510)
+|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus 2 ~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 66 (491)
T PRK10982 2 SNISKSFPGV---------------KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66 (491)
T ss_pred CceEEEeCCE---------------EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC
Confidence 6788999532 5999999999999999999999999999999999999999999999999985322
Q ss_pred cHHHhhccEEEEccCC
Q 010435 490 SMTNIQKSIGVCPQVT 505 (510)
Q Consensus 490 ~~~~~r~~iG~cpQ~~ 505 (510)
..+..|+.+||+||..
T Consensus 67 ~~~~~~~~i~~v~q~~ 82 (491)
T PRK10982 67 SKEALENGISMVHQEL 82 (491)
T ss_pred HHHHHhCCEEEEeccc
Confidence 3345578899999975
No 260
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=5.2e-15 Score=135.09 Aligned_cols=79 Identities=29% Similarity=0.593 Sum_probs=69.8
Q ss_pred EeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc
Q 010435 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488 (510)
Q Consensus 409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~ 488 (510)
++++++.|++. .++++++|++++||+++|+|+|||||||++++|+|+++|++|+++++|.++..
T Consensus 2 ~~~~~~~~~~~---------------~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~- 65 (157)
T cd00267 2 IENLSFRYGGR---------------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK- 65 (157)
T ss_pred eEEEEEEeCCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc-
Confidence 57888888542 59999999999999999999999999999999999999999999999998742
Q ss_pred ccHHHhhccEEEEcc
Q 010435 489 VSMTNIQKSIGVCPQ 503 (510)
Q Consensus 489 ~~~~~~r~~iG~cpQ 503 (510)
...++.++.++|+||
T Consensus 66 ~~~~~~~~~i~~~~q 80 (157)
T cd00267 66 LPLEELRRRIGYVPQ 80 (157)
T ss_pred CCHHHHHhceEEEee
Confidence 235567889999998
No 261
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.58 E-value=4.5e-15 Score=163.62 Aligned_cols=87 Identities=24% Similarity=0.331 Sum_probs=77.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|.++ +.+++|+||++++||.++|+|+|||||||++++|+|++ |++|+|.++|.|
T Consensus 348 ~~i~~~~vsf~~~~~--------------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSPDG--------------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEeccCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEe
Confidence 359999999766432 15899999999999999999999999999999999999 999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+++|||||++.|
T Consensus 413 i~~-~~~~~lr~~i~~v~Q~~~L 434 (588)
T PRK11174 413 LRE-LDPESWRKHLSWVGQNPQL 434 (588)
T ss_pred ccc-CCHHHHHhheEEecCCCcC
Confidence 974 5678899999999998765
No 262
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.58 E-value=2.6e-15 Score=133.49 Aligned_cols=70 Identities=30% Similarity=0.634 Sum_probs=64.5
Q ss_pred eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+|+||++++||+++|+|+|||||||++++|+|..+|++|+|.++|.++.. .+....++.++++||.+.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~ 70 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD-IDIEELRRRIGYVPQDPQL 70 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT-SHHHHHHHTEEEEESSHCH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc-ccccccccccccccccccc
Confidence 689999999999999999999999999999999999999999999999964 4567789999999998544
No 263
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.9e-15 Score=156.46 Aligned_cols=87 Identities=28% Similarity=0.444 Sum_probs=78.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++.+|+++.|++.+ ++++|+||++++||.++|+|+|||||||++++|.|+.+|++|++.+||.+.
T Consensus 320 ei~~~~l~~~y~~g~--------------~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 320 EISLENLSFRYPDGK--------------PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred eeeecceEEecCCCC--------------cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 455669999997641 699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++ .+.+.+|++++++||++.|
T Consensus 386 ~~-l~~~~~~k~i~~v~Q~p~l 406 (559)
T COG4988 386 RD-LSPEAWRKQISWVSQNPYL 406 (559)
T ss_pred cc-cCHHHHHhHeeeeCCCCcc
Confidence 74 5678999999999999865
No 264
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.58 E-value=3.5e-15 Score=164.11 Aligned_cols=90 Identities=21% Similarity=0.415 Sum_probs=80.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++. .+.+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 336 ~~i~~~~v~f~y~~~~------------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP------------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred ceEEEEEEEEECCCCC------------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 4699999999997531 1258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+.+|||||++.+
T Consensus 404 i~~-~~~~~~~~~i~~~~Q~~~l 425 (576)
T TIGR02204 404 LRQ-LDPAELRARMALVPQDPVL 425 (576)
T ss_pred HHh-cCHHHHHHhceEEccCCcc
Confidence 963 5677889999999998765
No 265
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.6e-15 Score=142.35 Aligned_cols=84 Identities=26% Similarity=0.479 Sum_probs=75.6
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++|++..|+++ ++|+|+|++|.+||..+|+|+||||||||+++++|..+|++|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r~gk---------------~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRRNGK---------------KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEECCE---------------eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeee
Confidence 4579999999999764 6999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEc
Q 010435 484 SIRSSVSMTNIQKSIGVCP 502 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cp 502 (510)
...+..-..++|++||+|.
T Consensus 94 ~~G~~~~~~elrk~IG~vS 112 (257)
T COG1119 94 RFGKGETIFELRKRIGLVS 112 (257)
T ss_pred eccCCcchHHHHHHhCccC
Confidence 8864222389999999985
No 266
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.58 E-value=2.3e-15 Score=169.78 Aligned_cols=91 Identities=27% Similarity=0.507 Sum_probs=84.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++|++++|+.+ +++.+++|+||+|++||+++|+|||||||||++++|.|++.|++|+|+|+|.
T Consensus 348 ~g~ief~nV~FsYPsR------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~ 415 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGE 415 (1228)
T ss_pred ccceEEEEEEecCCCC------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCc
Confidence 4579999999999865 3568999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+++ .+.+.+|++||+|.|+++|
T Consensus 416 di~~-~~~~~lr~~iglV~QePvl 438 (1228)
T KOG0055|consen 416 DIRN-LNLKWLRSQIGLVSQEPVL 438 (1228)
T ss_pred cchh-cchHHHHhhcCeeeechhh
Confidence 9984 6788999999999999887
No 267
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.58 E-value=4.7e-15 Score=162.74 Aligned_cols=89 Identities=19% Similarity=0.332 Sum_probs=79.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++++++.|+... ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 312 ~~I~~~~v~~~y~~~~-------------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~ 378 (569)
T PRK10789 312 GELDVNIRQFTYPQTD-------------HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378 (569)
T ss_pred CcEEEEEEEEECCCCC-------------CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEE
Confidence 3589999999996431 258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+.+|+.+|||||++.|
T Consensus 379 ~~~-~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 379 LTK-LQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred Hhh-CCHHHHHhheEEEccCCee
Confidence 863 4677889999999998754
No 268
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=4.8e-15 Score=142.37 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=67.2
Q ss_pred eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc
Q 010435 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV 489 (510)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~ 489 (510)
-+|+|.|++. . + |+||++++ |+++|+|+||||||||+++|+|+++|++|++.++|.++.+..
T Consensus 4 ~~l~~~~~~~---------------~-~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 65 (214)
T cd03297 4 VDIEKRLPDF---------------T-L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR 65 (214)
T ss_pred eeeeEecCCe---------------e-e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence 4899999642 2 3 99999999 999999999999999999999999999999999999874211
Q ss_pred ---cHHHhhccEEEEccCCCc
Q 010435 490 ---SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 490 ---~~~~~r~~iG~cpQ~~~L 507 (510)
+....++.+||+||...+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~ 86 (214)
T cd03297 66 KKINLPPQQRKIGLVFQQYAL 86 (214)
T ss_pred chhhhhhHhhcEEEEecCCcc
Confidence 234567899999998644
No 269
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.9e-15 Score=160.59 Aligned_cols=83 Identities=16% Similarity=0.415 Sum_probs=72.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++|.|+ .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.+
T Consensus 264 ~~l~~~~l~~~~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 326 (510)
T PRK09700 264 TVFEVRNVTSRDR-----------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD 326 (510)
T ss_pred cEEEEeCccccCC-----------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE
Confidence 4699999998651 38999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhccEEEEccC
Q 010435 485 IRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~ 504 (510)
+......+..|+.+||+||.
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK09700 327 ISPRSPLDAVKKGMAYITES 346 (510)
T ss_pred CCCCCHHHHHHCCcEEccCc
Confidence 84322234567789999996
No 270
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=4.8e-15 Score=140.61 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=62.0
Q ss_pred eEEEeeeEEEcCCCCC---------cccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435 406 AVQIRGLVKTFPGTRK---------IGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~---------~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G 476 (510)
.|+++||+|.|+-... .+.+...++...+.||+|+||++++||.+||+|+||||||||+++|+|.++||+|
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 5777888888754310 0000001234567899999999999999999999999999999999999999999
Q ss_pred eEEEcCee
Q 010435 477 DALIYGFS 484 (510)
Q Consensus 477 ~i~i~g~~ 484 (510)
+|.++|.-
T Consensus 83 ~v~v~G~v 90 (249)
T COG1134 83 KVKVTGKV 90 (249)
T ss_pred eEEEcceE
Confidence 99999963
No 271
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.57 E-value=6.8e-15 Score=162.17 Aligned_cols=88 Identities=26% Similarity=0.408 Sum_probs=79.7
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++. .+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 333 ~~I~~~~vsf~y~~~~--------------~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDNSR--------------QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCCCC--------------ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence 3699999999996421 48999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|++++|+||.+.|
T Consensus 399 i~~-~~~~~~r~~i~~v~Q~~~l 420 (588)
T PRK13657 399 IRT-VTRASLRRNIAVVFQDAGL 420 (588)
T ss_pred hhh-CCHHHHHhheEEEecCccc
Confidence 974 5678899999999998754
No 272
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.57 E-value=6.9e-15 Score=161.80 Aligned_cols=88 Identities=30% Similarity=0.391 Sum_probs=78.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++++ .+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 333 ~~i~~~~v~~~y~~~~--------------~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFANSS--------------QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECCCCC--------------ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEE
Confidence 3599999999996421 48999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+..|+.+|||||+..|
T Consensus 399 ~~~-~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 399 INT-VTRESLRKSIATVFQDAGL 420 (585)
T ss_pred hhh-CCHHHHHhheEEEccCCcc
Confidence 863 4567889999999998754
No 273
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.57 E-value=5.6e-15 Score=162.14 Aligned_cols=88 Identities=28% Similarity=0.542 Sum_probs=80.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++ +++++|+||++++||.+||+|||||||||+++.|.|+++|++|+|.+||.|
T Consensus 327 ~~I~f~~vsf~y~~~--------------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPGK--------------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCCC--------------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence 459999999999742 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+.+|+++|++||+..|
T Consensus 393 I~~-i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 393 IRD-ISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred hhh-cCHHHHHHhccEEccccee
Confidence 974 6788999999999998865
No 274
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.57 E-value=4.3e-15 Score=160.24 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=73.0
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|+++ .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRLSDT---------------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEcCCe---------------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccc
Confidence 48899999999642 499999999999999999999999999999999999999999999999876
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.. .+..+.++.+|++||..
T Consensus 68 ~~-~~~~~~~~~i~~~~q~~ 86 (490)
T PRK10938 68 TR-LSFEQLQKLVSDEWQRN 86 (490)
T ss_pred cc-CCHHHHHHHhceeccCc
Confidence 42 23344567799999974
No 275
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.57 E-value=2.9e-15 Score=136.73 Aligned_cols=86 Identities=29% Similarity=0.424 Sum_probs=77.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC-e
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-F 483 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g-~ 483 (510)
..+.+++++..|++- +|++++||.+.+||.-+|+|||||||||+|..|+|-.+|+.|+++++| .
T Consensus 4 ~iL~~~~vsVsF~GF---------------~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~ 68 (249)
T COG4674 4 IILYLDGVSVSFGGF---------------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT 68 (249)
T ss_pred ceEEEeceEEEEcce---------------eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCch
Confidence 468999999999763 699999999999999999999999999999999999999999999999 8
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
|+....+.+..|..||--+|.+
T Consensus 69 dl~~~~e~~IAr~GIGRKFQ~P 90 (249)
T COG4674 69 DLTKLPEHRIARAGIGRKFQKP 90 (249)
T ss_pred hhccCCHHHHHHhccCccccCC
Confidence 8876556666788888888965
No 276
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9.2e-15 Score=150.80 Aligned_cols=83 Identities=17% Similarity=0.341 Sum_probs=68.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++ ||+|.|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~-~l~k~~~~~----------------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~ 63 (352)
T PRK11144 2 LEL-NFKQQLGDL----------------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF 63 (352)
T ss_pred eEE-EEEEEeCCE----------------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 455 899999531 23 899999999999999999999999999999999999999999999874
Q ss_pred Ccc---cHHHhhccEEEEccCCCc
Q 010435 487 SSV---SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~---~~~~~r~~iG~cpQ~~~L 507 (510)
+.. +....++.+|||||...+
T Consensus 64 ~~~~~~~~~~~~~~i~~v~q~~~l 87 (352)
T PRK11144 64 DAEKGICLPPEKRRIGYVFQDARL 87 (352)
T ss_pred ccccccccchhhCCEEEEcCCccc
Confidence 211 133457899999998654
No 277
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.56 E-value=6.5e-15 Score=161.84 Aligned_cols=89 Identities=18% Similarity=0.403 Sum_probs=80.0
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++. ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus 329 ~~i~~~~v~f~y~~~~-------------~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRD-------------RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCCCC-------------CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence 3599999999996531 158999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.++.|++++||||++.|
T Consensus 396 i~~-~~~~~~~~~i~~v~Q~~~l 417 (571)
T TIGR02203 396 LAD-YTLASLRRQVALVSQDVVL 417 (571)
T ss_pred HHh-cCHHHHHhhceEEccCccc
Confidence 863 5678889999999998865
No 278
>PLN03130 ABC transporter C family member; Provisional
Probab=99.56 E-value=7.8e-15 Score=176.37 Aligned_cols=89 Identities=22% Similarity=0.438 Sum_probs=81.2
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..|+++|++++|++.. .++|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus 1236 g~I~f~nVsf~Y~~~~-------------~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPEL-------------PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCCCC-------------CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEe
Confidence 4699999999996431 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+++|++||++.|
T Consensus 1303 I~~-i~l~~LR~~IsiVpQdp~L 1324 (1622)
T PLN03130 1303 ISK-FGLMDLRKVLGIIPQAPVL 1324 (1622)
T ss_pred ccc-CCHHHHHhccEEECCCCcc
Confidence 974 5788999999999999876
No 279
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.56 E-value=7.8e-15 Score=151.47 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=67.3
Q ss_pred eeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc-
Q 010435 411 GLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV- 489 (510)
Q Consensus 411 ~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~- 489 (510)
||+|.|++. .+ ++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++....
T Consensus 4 ~l~~~~~~~----------------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~ 66 (354)
T TIGR02142 4 RFSKRLGDF----------------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK 66 (354)
T ss_pred EEEEEECCE----------------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcc
Confidence 788999531 35 899999999999999999999999999999999999999999999884211
Q ss_pred --cHHHhhccEEEEccCCCc
Q 010435 490 --SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 490 --~~~~~r~~iG~cpQ~~~L 507 (510)
.....++.+||+||+..+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l 86 (354)
T TIGR02142 67 GIFLPPEKRRIGYVFQEARL 86 (354)
T ss_pred ccccchhhCCeEEEecCCcc
Confidence 123457889999998654
No 280
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.56 E-value=9.7e-15 Score=154.05 Aligned_cols=98 Identities=17% Similarity=0.345 Sum_probs=80.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
.+.++++||+|.|..+.. .+ .+++++++||+|+||++++||++||+|++||||||+.++|+|+.+|++|++.++|.
T Consensus 278 ~~ll~V~~l~k~y~~~~~---~~-~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~ 353 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKG---LF-VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353 (539)
T ss_pred CceeEeeeeeeeeccccc---cc-cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCc
Confidence 567999999999975421 11 12245678999999999999999999999999999999999999999999999998
Q ss_pred ecCC-cccHHHhhccEEEEccCC
Q 010435 484 SIRS-SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~-~~~~~~~r~~iG~cpQ~~ 505 (510)
+..- ..+..+.|+++-+++|+.
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp 376 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDP 376 (539)
T ss_pred ccccccchhhhhhhheEEEEeCc
Confidence 7311 234566788999999976
No 281
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.2e-14 Score=160.92 Aligned_cols=97 Identities=24% Similarity=0.369 Sum_probs=76.5
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||+|.|+.+... . .++++.+.+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus 312 ~~L~~~~l~~~y~~~~~~--~--~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 387 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGL--L--NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR 387 (623)
T ss_pred ceEEEeeeEEEEcCCCcc--c--cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 469999999999632100 0 000112369999999999999999999999999999999999999999999999998
Q ss_pred cCCcc--cHHHhhccEEEEccCC
Q 010435 485 IRSSV--SMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~~~--~~~~~r~~iG~cpQ~~ 505 (510)
+.... +....|+.+||+||+.
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCc
Confidence 85321 2334678899999975
No 282
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.56 E-value=6.9e-15 Score=159.06 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=74.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-CcceEEEcCe
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGF 483 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-t~G~i~i~g~ 483 (510)
..++++|+++.|++.. ...+++++||++++||++||+|+||||||||+++|+|+.+| ++|+|.++|.
T Consensus 256 ~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~ 323 (500)
T TIGR02633 256 VILEARNLTCWDVINP------------HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGK 323 (500)
T ss_pred ceEEEeCCcccccccc------------cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCE
Confidence 3689999999984210 11589999999999999999999999999999999999985 8999999999
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++......+..|+++||+||..
T Consensus 324 ~~~~~~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 324 PVDIRNPAQAIRAGIAMVPEDR 345 (500)
T ss_pred ECCCCCHHHHHhCCCEEcCcch
Confidence 8843223355678999999983
No 283
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.55 E-value=8e-15 Score=158.13 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=73.9
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-CcceEEEcC
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYG 482 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-t~G~i~i~g 482 (510)
.+.++++|++|.|++. .+++|+||++++||++||+||||||||||+++|+|+.+| ++|+|+++|
T Consensus 258 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g 322 (490)
T PRK10938 258 EPRIVLNNGVVSYNDR---------------PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFG 322 (490)
T ss_pred CceEEEeceEEEECCe---------------eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEec
Confidence 4579999999999542 599999999999999999999999999999999999876 799999999
Q ss_pred eecCCcccHHHhhccEEEEccCC
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.++.+.......|+.+||+||..
T Consensus 323 ~~~~~~~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 323 RRRGSGETIWDIKKHIGYVSSSL 345 (490)
T ss_pred ccCCCCCCHHHHHhhceEECHHH
Confidence 87632223345678899999964
No 284
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=8.3e-15 Score=158.58 Aligned_cols=89 Identities=21% Similarity=0.390 Sum_probs=74.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-CCcceEEEcCe
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIYGF 483 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-pt~G~i~i~g~ 483 (510)
..++++|++|.|+... .+.+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.
T Consensus 258 ~~l~~~~l~~~~~~~~------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~ 325 (506)
T PRK13549 258 VILEVRNLTAWDPVNP------------HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGK 325 (506)
T ss_pred ceEEEecCcccccccc------------ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCE
Confidence 3689999999994310 1258999999999999999999999999999999999998 59999999999
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++......+..++.+||+||..
T Consensus 326 ~~~~~~~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 326 PVKIRNPQQAIAQGIAMVPEDR 347 (506)
T ss_pred ECCCCCHHHHHHCCCEEeCcch
Confidence 8843222345677899999973
No 285
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.55 E-value=1.2e-14 Score=159.14 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=79.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++... .+..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus 336 ~~i~~~~v~f~y~~~~~----------~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG----------SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCCC----------CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 46999999999965310 01258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.++.|+.+|+++|++.|
T Consensus 406 i~~-~~~~~~~~~i~~v~q~~~l 427 (555)
T TIGR01194 406 VSA-DSRDDYRDLFSAIFADFHL 427 (555)
T ss_pred CCC-CCHHHHHhhCcEEccChhh
Confidence 974 4567889999999998743
No 286
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.55 E-value=8.4e-15 Score=131.08 Aligned_cols=94 Identities=20% Similarity=0.410 Sum_probs=77.8
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.|++++++|+-+... .+.+++++++|.|++||.++|+||+|+||||++-+|+|+..|++|+|.+.|+++
T Consensus 6 ii~~~~l~ktvg~~~-----------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQGE-----------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcCCC-----------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcch
Confidence 688999999987643 256899999999999999999999999999999999999999999999999998
Q ss_pred CCcc--cHHHh-hccEEEEccCC-CccCC
Q 010435 486 RSSV--SMTNI-QKSIGVCPQVT-LFSYL 510 (510)
Q Consensus 486 ~~~~--~~~~~-r~~iG~cpQ~~-~L~~~ 510 (510)
.... ..... .+++|+|+|.- .+++|
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 5422 23334 46899999954 34443
No 287
>PLN03232 ABC transporter C family member; Provisional
Probab=99.55 E-value=9.8e-15 Score=175.18 Aligned_cols=89 Identities=16% Similarity=0.340 Sum_probs=80.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..|+++|++++|++.. ..+++|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus 1233 g~I~f~nVsf~Y~~~~-------------~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGL-------------PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECCCC-------------CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEE
Confidence 3599999999995431 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+++|++||++.|
T Consensus 1300 i~~-i~~~~lR~~i~iVpQdp~L 1321 (1495)
T PLN03232 1300 VAK-FGLTDLRRVLSIIPQSPVL 1321 (1495)
T ss_pred hhh-CCHHHHHhhcEEECCCCee
Confidence 974 5678999999999999865
No 288
>PTZ00243 ABC transporter; Provisional
Probab=99.54 E-value=1.6e-14 Score=173.48 Aligned_cols=89 Identities=18% Similarity=0.362 Sum_probs=81.0
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..|+++||+++|++.. ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus 1307 G~I~f~nVsf~Y~~~~-------------~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGL-------------PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCCCC-------------CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 3599999999996531 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+++|+++|++||++.|
T Consensus 1374 i~~-i~l~~LR~~I~iVpQdp~L 1395 (1560)
T PTZ00243 1374 IGA-YGLRELRRQFSMIPQDPVL 1395 (1560)
T ss_pred ccc-CCHHHHHhcceEECCCCcc
Confidence 974 5788999999999999866
No 289
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=1.3e-14 Score=134.80 Aligned_cols=68 Identities=25% Similarity=0.308 Sum_probs=58.9
Q ss_pred eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc
Q 010435 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV 489 (510)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~ 489 (510)
.|++|.|++. .+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~~~~---------------~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----- 62 (177)
T cd03222 4 PDCVKRYGVF---------------FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT----- 62 (177)
T ss_pred CCeEEEECCE---------------EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----
Confidence 4788888542 578885 9999999999999999999999999999999999999999853
Q ss_pred cHHHhhccEEEEccCCC
Q 010435 490 SMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 490 ~~~~~r~~iG~cpQ~~~ 506 (510)
+||+||...
T Consensus 63 --------i~~~~q~~~ 71 (177)
T cd03222 63 --------PVYKPQYID 71 (177)
T ss_pred --------EEEEcccCC
Confidence 688888653
No 290
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.53 E-value=1.7e-14 Score=173.34 Aligned_cols=89 Identities=20% Similarity=0.338 Sum_probs=81.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++.+|+++. ..+++|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus 1283 g~I~f~nVsf~Y~~~~-------------~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDL-------------DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCCC-------------cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 4699999999996531 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+.+|+++|++||++.|
T Consensus 1350 I~~-i~~~~LR~~i~iVpQdp~L 1371 (1522)
T TIGR00957 1350 IAK-IGLHDLRFKITIIPQDPVL 1371 (1522)
T ss_pred ccc-cCHHHHHhcCeEECCCCcc
Confidence 974 5788999999999999865
No 291
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.7e-14 Score=158.04 Aligned_cols=91 Identities=16% Similarity=0.293 Sum_probs=73.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
++.++++||++.|+... +..++++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~~l~v~~l~~~y~~~~-----------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~ 78 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ-----------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM 78 (623)
T ss_pred CceEEEeceEEEecCCC-----------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCE
Confidence 45799999999996421 1236999999999999999999999999999999999999999999999987
Q ss_pred ecCC------------cccHHHhh-ccEEEEccCC
Q 010435 484 SIRS------------SVSMTNIQ-KSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~------------~~~~~~~r-~~iG~cpQ~~ 505 (510)
++.+ ..+..+.| +.+||++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 113 (623)
T PRK10261 79 LLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEP 113 (623)
T ss_pred EeccccccccccccCCHHHHHHHhCCCEEEEEeCc
Confidence 5411 01122343 5799999975
No 292
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.53 E-value=1.4e-14 Score=142.40 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=60.9
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+++++||++++||+++|+|+||||||||+++|+|+.++ +|+|.++|.++.. .+..+.++.+||+||.+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~-~~~~~~~~~i~~v~q~~~ 79 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEA-WSAAELARHRAYLSQQQT 79 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCc-CCHHHHhhheEEecccCc
Confidence 79999999999999999999999999999999999865 8999999999853 334566778999999763
No 293
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.53 E-value=1.8e-14 Score=139.31 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=65.7
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||+|.|+.+.. . ++...++||+||||+|++||++||+|.|||||||+-++|+|+++||+|+|+++|.+
T Consensus 3 ~ll~v~~l~k~f~~~~~---~---~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~ 76 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG---F---GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD 76 (268)
T ss_pred ceEEEeccEEEEecccc---c---CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence 35899999999976421 0 12224689999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 010435 485 IR 486 (510)
Q Consensus 485 i~ 486 (510)
+.
T Consensus 77 i~ 78 (268)
T COG4608 77 IT 78 (268)
T ss_pred hh
Confidence 74
No 294
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.53 E-value=2.4e-14 Score=155.77 Aligned_cols=89 Identities=19% Similarity=0.332 Sum_probs=73.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i~i 480 (510)
.+++++++|.|++.. +.+.+++++||++++||++||+|+||||||||+++|+|+++| ++|+|.+
T Consensus 5 ~l~~~~l~~~~~~~~-----------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 73 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-----------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRF 73 (529)
T ss_pred eEEEeceEEEecCCC-----------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEE
Confidence 589999999996310 012699999999999999999999999999999999999987 7999999
Q ss_pred cCeecCCcc--cHHHhh-ccEEEEccCC
Q 010435 481 YGFSIRSSV--SMTNIQ-KSIGVCPQVT 505 (510)
Q Consensus 481 ~g~~i~~~~--~~~~~r-~~iG~cpQ~~ 505 (510)
+|.++.... +....| +.+||+||+.
T Consensus 74 ~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 74 HGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred CCEecccCCHHHHHHHhcCceEEEecCc
Confidence 999985311 122334 5899999975
No 295
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.52 E-value=1.6e-14 Score=140.42 Aligned_cols=67 Identities=22% Similarity=0.428 Sum_probs=59.6
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC----CcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p----t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|+++|.++.. .+..++.+||+||+.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~---~~~~~~~i~~~~q~~ 71 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP---LSIRGRHIATIMQNP 71 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechh---hhhhhheeEEEecCc
Confidence 57899999999999999999999999999999999999 89999999998842 223346899999986
No 296
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=7e-15 Score=131.18 Aligned_cols=72 Identities=17% Similarity=0.430 Sum_probs=67.7
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.|+++||.+.+||..+|.||+||||||++|+++-+.+||+|++++.|.++.+ ...+..|+++.||-|.+.|
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~-~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST-LKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccc-cChHHHHHHHHHHHcCccc
Confidence 59999999999999999999999999999999999999999999999999974 5688999999999997755
No 297
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.52 E-value=1.7e-14 Score=171.87 Aligned_cols=89 Identities=19% Similarity=0.387 Sum_probs=78.4
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE-cCee
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI-YGFS 484 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i-~g~~ 484 (510)
.++++||++.|+++. ++++++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.+ +|.+
T Consensus 382 ~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK------------DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCCC------------CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcc
Confidence 699999999997531 236999999999999999999999999999999999999999999999 5688
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+.+|+++|||||++.|
T Consensus 450 i~~-~~~~~lr~~Ig~V~Q~~~L 471 (1466)
T PTZ00265 450 LKD-INLKWWRSKIGVVSQDPLL 471 (1466)
T ss_pred hhh-CCHHHHHHhccEecccccc
Confidence 853 4567789999999998765
No 298
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.52 E-value=1.9e-14 Score=162.44 Aligned_cols=91 Identities=25% Similarity=0.450 Sum_probs=84.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..|+++||++.|+.+ |++.+++|+||+|++||.++|+||+||||||.+.+|-+++.|++|.|.|||+
T Consensus 985 ~G~I~~~~V~F~YPsR------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~ 1052 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTR------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV 1052 (1228)
T ss_pred eeEEEEeeeEeeCCCC------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc
Confidence 3469999999999864 4568999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+++ .+.+.+|++||.|.|+++|
T Consensus 1053 dik~-lnl~~LR~~i~lVsQEP~L 1075 (1228)
T KOG0055|consen 1053 DIKD-LNLKWLRKQIGLVSQEPVL 1075 (1228)
T ss_pred cccc-CCHHHHHHhcceeccCchh
Confidence 9984 7899999999999999987
No 299
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.51 E-value=2.7e-14 Score=170.23 Aligned_cols=90 Identities=17% Similarity=0.287 Sum_probs=81.0
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----------
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----------- 473 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p----------- 473 (510)
..|+++||++.|+++. ++++++|+||++++||++||+|++||||||++++|.|+++|
T Consensus 1164 g~I~f~nVsF~Y~~~~------------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~ 1231 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRP------------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNE 1231 (1466)
T ss_pred ceEEEEEEEEECCCCC------------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccc
Confidence 4699999999997531 22599999999999999999999999999999999999998
Q ss_pred -------------------------------------------CcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 474 -------------------------------------------TGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 474 -------------------------------------------t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++|+|.++|.|+++ .+.+.+|+++|||||++.|
T Consensus 1232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~-~~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1232 HTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD-YNLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh-CCHHHHHhhccEeCCCCcc
Confidence 69999999999974 5788999999999999866
No 300
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.51 E-value=3.3e-14 Score=155.51 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=68.3
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
++.++++||+|.|++. +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~~l~i~~l~~~y~~~--------------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~- 68 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK--------------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP- 68 (556)
T ss_pred cEEEEEeeEEEEeCCC--------------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-
Confidence 3479999999999621 1599999999999999999999999999999999999999999999964
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+..+|||||+..+
T Consensus 69 -----------~~~i~~v~Q~~~~ 81 (556)
T PRK11819 69 -----------GIKVGYLPQEPQL 81 (556)
T ss_pred -----------CCEEEEEecCCCC
Confidence 1369999998644
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.51 E-value=4.5e-14 Score=153.44 Aligned_cols=93 Identities=19% Similarity=0.344 Sum_probs=72.9
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc-C
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY-G 482 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~-g 482 (510)
...++++|++|.|++.. .+.+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++ |
T Consensus 277 ~~~l~~~~l~~~~~~~~----------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g 346 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD----------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVG 346 (520)
T ss_pred CceEEEeccEEEeccCC----------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecC
Confidence 34699999999995310 001259999999999999999999999999999999999999999999996 6
Q ss_pred ee---cCCcc--cHHHhhccEEEEccCCC
Q 010435 483 FS---IRSSV--SMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 483 ~~---i~~~~--~~~~~r~~iG~cpQ~~~ 506 (510)
.+ +.... +....|+++||+||+..
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 347 DEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred CccccccccchhhHHHHhhhEEEEccCcc
Confidence 42 22110 12345678999999854
No 302
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.4e-14 Score=132.54 Aligned_cols=87 Identities=24% Similarity=0.378 Sum_probs=76.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEcCe
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF 483 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~g~ 483 (510)
.++++||+..-.++ +.+|+++||+|++||+.+|+||||||||||.+.|+|.. .+|+|+|.++|.
T Consensus 3 ~L~I~dLhv~v~~~--------------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ge 68 (251)
T COG0396 3 MLEIKDLHVEVEGK--------------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE 68 (251)
T ss_pred eeEEeeeEEEecCc--------------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCc
Confidence 47889998777542 25999999999999999999999999999999999975 889999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
||.+...-+++|..|.+-+|.+.
T Consensus 69 dI~~l~~~ERAr~GifLafQ~P~ 91 (251)
T COG0396 69 DILELSPDERARAGIFLAFQYPV 91 (251)
T ss_pred ccccCCHhHHHhcCCEEeecCCc
Confidence 99765556778999999999874
No 303
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.6e-14 Score=130.52 Aligned_cols=82 Identities=27% Similarity=0.468 Sum_probs=71.0
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+.+++++-.|++. +..|++|+|+++.+||.+++|||+||||||++|+++|+.+|+.|+|.++|..|.
T Consensus 4 l~~~~~sl~y~g~-------------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 4 LNVSHLSLSYEGK-------------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70 (259)
T ss_pred eehhheEEecCCc-------------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence 5678899999764 236999999999999999999999999999999999999999999999999985
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. -..=|+|+|.+.|
T Consensus 71 gP------gaergvVFQ~~~L 85 (259)
T COG4525 71 GP------GAERGVVFQNEAL 85 (259)
T ss_pred CC------CccceeEeccCcc
Confidence 31 1223999999875
No 304
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.6e-14 Score=153.05 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=71.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.+ + .+++++||++++||++||+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus 249 ~~i~~~~l~~~~--~---------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 311 (491)
T PRK10982 249 VILEVRNLTSLR--Q---------------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKK 311 (491)
T ss_pred cEEEEeCccccc--C---------------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEE
Confidence 468999998864 1 48999999999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhccEEEEccC
Q 010435 485 IRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~ 504 (510)
+......+..++.+||+||.
T Consensus 312 i~~~~~~~~~~~~i~~~~q~ 331 (491)
T PRK10982 312 INNHNANEAINHGFALVTEE 331 (491)
T ss_pred CCCCCHHHHHHCCCEEcCCc
Confidence 85322234457789999996
No 305
>PLN03211 ABC transporter G-25; Provisional
Probab=99.49 E-value=3.2e-14 Score=157.72 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=62.1
Q ss_pred cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC--cceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--GGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt--~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.+++|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|.++. ++.++++|||+|++.+
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~-----~~~~~~i~yv~Q~~~l 151 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT-----KQILKRTGFVTQDDIL 151 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc-----hhhccceEEECccccc
Confidence 46999999999999999999999999999999999999886 899999999873 1346779999999865
No 306
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=5.3e-14 Score=153.19 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=65.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|+++ ++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~i~~ls~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFGAK---------------PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeCCc---------------EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---
Confidence 6899999999542 5999999999999999999999999999999999999999999999862
Q ss_pred CcccHHHhhccEEEEccCCC
Q 010435 487 SSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+.+||+||+..
T Consensus 64 ---------~~i~~~~q~~~ 74 (530)
T PRK15064 64 ---------ERLGKLRQDQF 74 (530)
T ss_pred ---------CEEEEEeccCC
Confidence 35899999753
No 307
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.49 E-value=5.4e-14 Score=153.08 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=73.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++.... ..++.+.+.+++++||++++||++||+|+||||||||+++|+|+.+ ++|+|+++|.+
T Consensus 274 ~~l~~~~l~~~~~~~~~~----~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~ 348 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGI----LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQP 348 (529)
T ss_pred CcccccCcEEEeecCccc----cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEE
Confidence 468999999999531000 0000012369999999999999999999999999999999999985 89999999998
Q ss_pred cCCcc--cHHHhhccEEEEccCC
Q 010435 485 IRSSV--SMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~~~--~~~~~r~~iG~cpQ~~ 505 (510)
+.... +....|+.+||+||+.
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCc
Confidence 84211 2233477899999985
No 308
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.49 E-value=9.5e-14 Score=138.78 Aligned_cols=73 Identities=21% Similarity=0.359 Sum_probs=64.7
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++++++. +. .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 37 ~~~l~i~nls~~--~~---------------~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g- 98 (282)
T cd03291 37 DNNLFFSNLCLV--GA---------------PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG- 98 (282)
T ss_pred CCeEEEEEEEEe--cc---------------cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-
Confidence 457999999984 11 499999999999999999999999999999999999999999999987
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+||+||...+
T Consensus 99 -------------~i~yv~q~~~l 109 (282)
T cd03291 99 -------------RISFSSQFSWI 109 (282)
T ss_pred -------------EEEEEeCcccc
Confidence 28889887643
No 309
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.49 E-value=5.5e-14 Score=152.71 Aligned_cols=60 Identities=27% Similarity=0.560 Sum_probs=55.1
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCcceEEEc
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIY 481 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~G~i~i~ 481 (510)
++++|++|.|+++ .+++++||++++||+++|+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 1 IEVKNLTKKFDGK---------------EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred CEEEEEEEEECCe---------------EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 4689999999532 5999999999999999999999999999999999997 7999999997
No 310
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.49 E-value=1.7e-14 Score=133.74 Aligned_cols=88 Identities=26% Similarity=0.375 Sum_probs=70.1
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+.+.++.|.|.+... .+++|++++||+|++||.+.++|+|||||||+++.|+|.++||+|+|.|+|.||.
T Consensus 2 i~~~~~~~~f~~g~~----------~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVt 71 (263)
T COG1101 2 ISLSNATKTFFKGTP----------LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT 71 (263)
T ss_pred cccccceeeecCCCh----------hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecc
Confidence 356677788855421 2457999999999999999999999999999999999999999999999999996
Q ss_pred CcccHHHhhccEEEEccCC
Q 010435 487 SSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~ 505 (510)
. ....+--..++-|+|++
T Consensus 72 k-~~~~~RA~~larVfQdp 89 (263)
T COG1101 72 K-KSVAKRANLLARVFQDP 89 (263)
T ss_pred c-CCHHHHhhHHHHHhcch
Confidence 4 33333334456667764
No 311
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.48 E-value=2.1e-14 Score=145.59 Aligned_cols=271 Identities=22% Similarity=0.295 Sum_probs=37.6
Q ss_pred eeecCCHHHHHHHHHcCCCccceEEEEeCCCCC-------eeEEEEEEcccccCCCCCCCCCccchhhHHHHHHHHHHHH
Q 010435 14 VMSFRTAAEVDDWLYSNPMRCPGALHFVDRNAT-------TISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIAR 86 (510)
Q Consensus 14 ~~~f~s~~~l~~~~~~~~~~~~~av~F~~~~~~-------~~~Y~i~~n~~~~~~~~~~~~~~~~~~~~lQ~~id~ai~~ 86 (510)
...++|++++++.+.++ +..+++++++.... ..++++..|..... ....+|..+++ +.+
T Consensus 60 ~~~~~~~~~~~~~~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~-l~~ 125 (344)
T PF12698_consen 60 VVEYDSEEEAKDALKNG--KIDAIIVIPKNFSQDLLSSGESPNITVYINSSNPH-----------SSQIIQNALSS-LLQ 125 (344)
T ss_dssp EEECS-HHHHHHHHHHH--T-SEEEEE-TTCCCHCH-TT--ECCEEEESSSSHH-----------HHHHHHHHHHH-HHH
T ss_pred eeeeCCHHHHHHHHHhC--CCcEEEEcCccccccccccCCcceEEEEeecccch-----------hhhhhhccccc-cch
Confidence 56899999999988654 34467777655432 23344444432211 12345555665 555
Q ss_pred HHhCCC-------ccceeeeeeccCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhCCChhHH
Q 010435 87 SLVGDP-------NFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAY 159 (510)
Q Consensus 87 ~~~~~~-------~~~~~v~~~~~p~p~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~iV~EKe~~lke~m~~mGl~~~~y 159 (510)
...... ....++..+..|..... .+....+.+.+.++..++++......+++|||+|+++.|++||++...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~ 204 (344)
T PF12698_consen 126 QLNASSEGKSAIQSSNSPIPVESIPLSNPS-SSFASYLIPFILFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSY 204 (344)
T ss_dssp HHHHCCCGCCCCHHHT--EEEEEEEECCCH-HHCHTT-------------------------------------------
T ss_pred hhhhhhhhhhhhcccccccccccccccccc-ccccccccccchhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHH
Confidence 433211 01122333333322111 2222223332332223333444456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010435 160 WLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFL 239 (510)
Q Consensus 160 Wls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~~S~fF~~~~~a~~~~~~~~~~~~~ 239 (510)
|+++++.+++..++.+++++++ +++...+...+...+++++++|+++.+++++++|.+|++++.+..++.++.+....
T Consensus 205 ~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 282 (344)
T PF12698_consen 205 WLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSF 282 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988887655543 34321233336667788899999999999999999999998876544333321111
Q ss_pred HHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCccccccCCCcCCCCCCcccchHHHHHHHHHHHH
Q 010435 240 TQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATF 319 (510)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (510)
.... .++ .+..+..++.+.+++|++.+..++..+.... |. .....+.++++.+
T Consensus 283 ~~~~---~~~-~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~---------~~--------------~~~~~~~~l~~~~ 335 (344)
T PF12698_consen 283 LSGG---FFP-LSSLPSFLQWISSFLPFYWFIQGLRNIIYGD---------WS--------------EIWISLIILLLFA 335 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH---HHh-HHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---------HH--------------HHHHHHHHHHHHH
Confidence 1000 011 1123345667788999999888877664210 10 1112345677788
Q ss_pred HHHHHHHHH
Q 010435 320 FVWFILAIY 328 (510)
Q Consensus 320 ~ly~lL~~y 328 (510)
++|+++++|
T Consensus 336 ~v~~~l~~~ 344 (344)
T PF12698_consen 336 VVYLLLAIL 344 (344)
T ss_dssp ---------
T ss_pred HHHHHHHhC
Confidence 889888876
No 312
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.48 E-value=6.7e-14 Score=153.07 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=67.7
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++|.|++. +++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.+++
T Consensus 3 ~~i~~~nls~~~~~~--------------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-- 66 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK--------------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-- 66 (552)
T ss_pred EEEEEeeEEEecCCC--------------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--
Confidence 468999999999622 1599999999999999999999999999999999999999999999864
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+||+||+..+
T Consensus 67 ----------~~~i~~v~Q~~~~ 79 (552)
T TIGR03719 67 ----------GIKVGYLPQEPQL 79 (552)
T ss_pred ----------CCEEEEEeccCCC
Confidence 2469999998644
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.48 E-value=6.8e-14 Score=151.28 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=62.0
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++......+..|+.+||+||..
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 6999999999999999999999999999999999999999999999999853222234677899999983
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=8.7e-14 Score=151.49 Aligned_cols=74 Identities=26% Similarity=0.335 Sum_probs=67.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++|.|+++ .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~- 381 (530)
T PRK15064 318 NALEVENLTKGFDNG---------------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN- 381 (530)
T ss_pred ceEEEEeeEEeeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-
Confidence 479999999999542 5899999999999999999999999999999999999999999999762
Q ss_pred cCCcccHHHhhccEEEEccCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+.+||+||+.
T Consensus 382 -----------~~i~~~~q~~ 391 (530)
T PRK15064 382 -----------ANIGYYAQDH 391 (530)
T ss_pred -----------eEEEEEcccc
Confidence 4699999974
No 315
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3e-14 Score=147.82 Aligned_cols=86 Identities=27% Similarity=0.471 Sum_probs=77.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++++|+++. .+|++|+||++++||.++|+|++||||||++..|+|.++|++|+|..+|.++
T Consensus 336 ~l~~~~vsF~y~~~~-------------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQQ-------------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCCc-------------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcCh
Confidence 799999999998753 2699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.. .+-+++|+.+++.+|..
T Consensus 403 ~~-l~~~~~~e~i~vl~Qr~ 421 (573)
T COG4987 403 AS-LDEQALRETISVLTQRV 421 (573)
T ss_pred hh-CChhhHHHHHhhhccch
Confidence 64 34456899999999965
No 316
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.47 E-value=1.9e-13 Score=151.96 Aligned_cols=90 Identities=17% Similarity=0.395 Sum_probs=75.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|++.+ +.+.+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|.++
T Consensus 4 ~l~~~nl~~~y~~~~-----------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSGE-----------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCCC-----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 589999999996421 112599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHH---h-hccEEEEccCCCc
Q 010435 486 RSSVSMTN---I-QKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~---~-r~~iG~cpQ~~~L 507 (510)
.. ...++ . |+.+||+||...+
T Consensus 73 ~~-~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 73 AT-LDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred Cc-CCHHHHHHHHhccEEEEeCCccc
Confidence 53 22222 2 5789999997643
No 317
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.47 E-value=1.4e-13 Score=165.13 Aligned_cols=88 Identities=28% Similarity=0.451 Sum_probs=79.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..|+++||+++|++.. ..+|+|+||+|++||.+||+|++||||||++++|.|+++ ++|+|.|+|.|
T Consensus 1216 g~I~f~nVs~~Y~~~~-------------~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAG-------------RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCCCC-------------cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEE
Confidence 4699999999996531 269999999999999999999999999999999999997 89999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+.+|++++++||++.|
T Consensus 1282 i~~-i~~~~lR~~is~IpQdp~L 1303 (1490)
T TIGR01271 1282 WNS-VTLQTWRKAFGVIPQKVFI 1303 (1490)
T ss_pred ccc-CCHHHHHhceEEEeCCCcc
Confidence 973 5688999999999999865
No 318
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.47 E-value=9.5e-14 Score=150.19 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=62.8
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|+++|.++......+..++.+||+||..
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 337 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDR 337 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCH
Confidence 38999999999999999999999999999999999999999999999998853223345678999999974
No 319
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.46 E-value=1e-13 Score=142.82 Aligned_cols=89 Identities=28% Similarity=0.483 Sum_probs=79.9
Q ss_pred CCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
.+..+.++++...=++. +++.|+|+||++.+||.+|++||+|||||||.++|.|..+|++|.|.+||
T Consensus 331 P~g~L~Ve~l~~~PPg~-------------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDg 397 (580)
T COG4618 331 PQGALSVERLTAAPPGQ-------------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG 397 (580)
T ss_pred CCceeeEeeeeecCCCC-------------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecc
Confidence 35679999998865543 23799999999999999999999999999999999999999999999999
Q ss_pred eecCCcccHHHhhccEEEEccCC
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.|++ .++.++.-++|||.||+-
T Consensus 398 a~l~-qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 398 ADLR-QWDREQLGRHIGYLPQDV 419 (580)
T ss_pred hhhh-cCCHHHhccccCcCcccc
Confidence 9997 588999999999999964
No 320
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.46 E-value=4.9e-14 Score=136.37 Aligned_cols=64 Identities=28% Similarity=0.403 Sum_probs=58.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
+.++++++.|++. ++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++
T Consensus 23 l~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 86 (224)
T cd03220 23 LGILGRKGEVGEF---------------WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS 86 (224)
T ss_pred hhhhhhhhhcCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 5677888888542 699999999999999999999999999999999999999999999999876
No 321
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=1.5e-11 Score=139.43 Aligned_cols=315 Identities=20% Similarity=0.229 Sum_probs=165.4
Q ss_pred HHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccCChHHHHHHHHHHHHHHHHHHHH
Q 010435 137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMM-FQFDFFLNNSFAVLFLLFFLFELNMTGFAFM 215 (510)
Q Consensus 137 iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~-~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~ 215 (510)
.|.+|++.. .=-.+|++=++..+.++..-++.+.+++++.+. .++. -....+...++++++...++..+-=+
T Consensus 519 pv~~Khr~~------~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~-~~A~rFF~~fL~lf~~~~~~s~lFr~ 591 (1391)
T KOG0065|consen 519 PVFYKHRDL------SFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLK-RNAGRFFIQFLFLFLCQFCMSGLFRF 591 (1391)
T ss_pred chHHHhhcc------cccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466665433 124569999999999999888876666554432 2211 11234556666667777777777677
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHhhcCc-cCcccchhhhhhheecCh-HHHHHHHHHHHHhcCCCCCccccccC
Q 010435 216 FSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFP-YSDQFSNTYRTIWSLFPP-NLLAEALQLLSDATETPQDIGISWSR 293 (510)
Q Consensus 216 ~S~fF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~P~-~~~~~~~~~i~~~~~~~~~~g~~w~~ 293 (510)
++...++-..|...+.+..++.++ .. ++. ...++....+|+..+.|. +++...+ +.+... -+|..
T Consensus 592 ia~l~~t~~~An~~g~~~~L~i~m---~~--Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~--~NEF~~------~~~~c 658 (1391)
T KOG0065|consen 592 IASLSRTLSIANLIGGILLLVLFM---YG--GFVIPKKDMPPWFRWIAYINPLMYAFESLM--SNEFHG------RRWPC 658 (1391)
T ss_pred HHHhcchHHHHhhHhHHHHHHHHH---Hc--ceeeeccccchHHHHHHHHCHHHHHHHHHH--Hhhhhc------ccCCC
Confidence 777777777777665443332111 00 111 224456677888777774 2232221 222211 11211
Q ss_pred C---------C----cCC------C---------------CCCcc-cchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 010435 294 R---------A----ECA------P---------------NDTEC-VITINDIYIWLVATFFVWFILAIYLDNIIPNAAG 338 (510)
Q Consensus 294 ~---------~----~~~------~---------------~~~~~-~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g 338 (510)
. . .|. . ....+ =..++-++.+.++=.+++.+++-|++-...+
T Consensus 659 ~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~--- 735 (1391)
T KOG0065|consen 659 SPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKS--- 735 (1391)
T ss_pred CCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccc---
Confidence 1 0 010 0 00000 0234445566666667777777776522111
Q ss_pred CCcceeecccccCcCCCCCCCcccCccccccCCCCCCCCCCCCChhhHH--HHHHHHhhhhcCCCCCCceEEEeeeEEEc
Q 010435 339 VRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLE--EENMVKQQIRESIPDPNVAVQIRGLVKTF 416 (510)
Q Consensus 339 ~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~--e~~~~~~~~~~~~~~~~~~i~~~~l~k~y 416 (510)
+.-.- ++ +++.+.+.+..+ .....+ ..+|+.+ ++..+. ...+.....+....++|+.+.-
T Consensus 736 --~~~l~-~~----~~~~~~~~~~~~------~~~~~~----~~~~s~~~~~~~~~~-~~~~~~~~~~~V~~w~dl~~~~ 797 (1391)
T KOG0065|consen 736 --GAILV-FK----KGKEKKKVKSAG------SSSEIE----KLDDSSHQEKNKMVL-PFTPLSLTFKDVFYWVDLPYEM 797 (1391)
T ss_pred --cceee-ec----cchhhhcchhcc------cccccc----ccccccccccccccC-CCccccccccceEEEEeCCccc
Confidence 11000 00 000000000000 000000 0000000 000000 0000111123455666666555
Q ss_pred CCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcCeecCCcccHHHh
Q 010435 417 PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNI 494 (510)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g~~i~~~~~~~~~ 494 (510)
+.+ .+.+..|+||+=-++||-.++|+|+|||||||||++|+|-..- .+|+|.|+|++.. .+..
T Consensus 798 ~~q-----------G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~----q~tF 862 (1391)
T KOG0065|consen 798 PIQ-----------GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD----QETF 862 (1391)
T ss_pred ccc-----------ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc----hhhh
Confidence 332 1233699999999999999999999999999999999996532 4699999999862 2577
Q ss_pred hccEEEEccCCCc
Q 010435 495 QKSIGVCPQVTLF 507 (510)
Q Consensus 495 r~~iG~cpQ~~~L 507 (510)
+|.+|||-|.|+-
T Consensus 863 ~R~~GYvqQ~DiH 875 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIH 875 (1391)
T ss_pred ccccceeeccccc
Confidence 8999999999974
No 322
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.46 E-value=1.6e-13 Score=135.48 Aligned_cols=88 Identities=24% Similarity=0.476 Sum_probs=73.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-C----CcceEEEc
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-V----TGGDALIY 481 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-p----t~G~i~i~ 481 (510)
++++||+..|.... +.++||+||||++++||++||+|.+|||||||.+.|.|+++ | ++|+|.++
T Consensus 2 L~v~nL~v~f~~~~-----------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~ 70 (316)
T COG0444 2 LEVKNLSVSFPTDA-----------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD 70 (316)
T ss_pred ceEeeeEEEEecCC-----------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEEC
Confidence 57899999996542 24579999999999999999999999999999999999998 4 57999999
Q ss_pred CeecCCccc--HHHhh-ccEEEEccCC
Q 010435 482 GFSIRSSVS--MTNIQ-KSIGVCPQVT 505 (510)
Q Consensus 482 g~~i~~~~~--~~~~r-~~iG~cpQ~~ 505 (510)
|.|+.+..+ ++++| +.|+++||..
T Consensus 71 g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 71 GKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred CcccccCCHHHHHhhcCceEEEEEcCc
Confidence 998854222 33444 5899999975
No 323
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.45 E-value=1.7e-13 Score=158.11 Aligned_cols=92 Identities=20% Similarity=0.381 Sum_probs=84.3
Q ss_pred CCCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435 402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (510)
Q Consensus 402 ~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~ 481 (510)
+.+..|+++|++.+|+.... .+|+||||+|++||.+||+|.+||||||+++.|-++.+|++|+|.||
T Consensus 1134 P~~G~I~f~~~~~RYrp~lp-------------~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ID 1200 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLP-------------LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILID 1200 (1381)
T ss_pred CCCCeEEEEEeEEEeCCCCc-------------chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEc
Confidence 34567999999999976422 69999999999999999999999999999999999999999999999
Q ss_pred CeecCCcccHHHhhccEEEEccCCCc
Q 010435 482 GFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 482 g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|.||.+ -.+.+.|++++++||+++|
T Consensus 1201 gvdI~~-igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1201 GVDISK-IGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred Ceeccc-ccHHHHHhcCeeeCCCCce
Confidence 999974 6799999999999999987
No 324
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.45 E-value=8.8e-14 Score=125.82 Aligned_cols=81 Identities=17% Similarity=0.347 Sum_probs=69.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+.+++++..|+. .-=..+++|+.||+++|+||+||||||++|+++|+..|.+|+++|+|.|+.
T Consensus 2 l~L~~V~~~y~~-----------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGH-----------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCc-----------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC
Confidence 467788888964 334578999999999999999999999999999999999999999999984
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.....+|=+.+++|+|-|
T Consensus 65 ---~~~P~~RPVSmlFQEnNL 82 (231)
T COG3840 65 ---ASPPAERPVSMLFQENNL 82 (231)
T ss_pred ---cCCcccCChhhhhhcccc
Confidence 334567889999997754
No 325
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.5e-13 Score=152.46 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=58.1
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
++++||+|.|+++ .+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 i~i~nls~~~g~~---------------~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~ 63 (638)
T PRK10636 2 IVFSSLQIRRGVR---------------VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEEEeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 6899999999643 5999999999999999999999999999999999999999999999874
No 326
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.44 E-value=1.6e-13 Score=133.40 Aligned_cols=65 Identities=25% Similarity=0.430 Sum_probs=56.6
Q ss_pred eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++++||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++... . ...||+||...+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~-----~~~~~v~q~~~l 65 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP-G-----PDRMVVFQNYSL 65 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-C-----hhheEEecCccc
Confidence 5789999999999999999999999999999999999999999999988421 1 124899998654
No 327
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.44 E-value=2.2e-13 Score=135.05 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=63.2
Q ss_pred ceEEEeeeEEEcCCCCC-cccccc----cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE
Q 010435 405 VAVQIRGLVKTFPGTRK-IGCCCK----CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~-~~~~~~----~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~ 479 (510)
..+.++||+|+|...+. .+.-.. .++...+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 46899999999976321 000000 0122455799999999999999999999999999999999999999999999
Q ss_pred EcCe
Q 010435 480 IYGF 483 (510)
Q Consensus 480 i~g~ 483 (510)
++|.
T Consensus 83 ~~g~ 86 (264)
T PRK13546 83 RNGE 86 (264)
T ss_pred ECCE
Confidence 9985
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.43 E-value=2.4e-13 Score=148.79 Aligned_cols=75 Identities=24% Similarity=0.394 Sum_probs=66.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++++++.|+++ .+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.+++
T Consensus 322 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~- 385 (556)
T PRK11819 322 DKVIEAENLSKSFGDR---------------LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE- 385 (556)
T ss_pred CeEEEEEeEEEEECCe---------------eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence 3479999999999542 599999999999999999999999999999999999999999999843
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++ .+||+||..
T Consensus 386 ~~-----------~i~~v~q~~ 396 (556)
T PRK11819 386 TV-----------KLAYVDQSR 396 (556)
T ss_pred ce-----------EEEEEeCch
Confidence 21 599999974
No 329
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=1.2e-13 Score=134.88 Aligned_cols=102 Identities=24% Similarity=0.405 Sum_probs=80.1
Q ss_pred ceEEEeeeEEEcCCCCC-------cccccc---cCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435 405 VAVQIRGLVKTFPGTRK-------IGCCCK---CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~-------~~~~~~---~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt 474 (510)
..++++|++|.|+.+.. .| ..+ .++++-+..|+|+||+|++|||+.|.|-+|||||||++++.++++||
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G-~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQG-KSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcC-CcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC
Confidence 46899999999976421 00 000 03445567899999999999999999999999999999999999999
Q ss_pred cceEEEcCeecCC--cccHHHh-hccEEEEccCCCc
Q 010435 475 GGDALIYGFSIRS--SVSMTNI-QKSIGVCPQVTLF 507 (510)
Q Consensus 475 ~G~i~i~g~~i~~--~~~~~~~-r~~iG~cpQ~~~L 507 (510)
+|+|.++|.|+.. ..++.+. |+++++|+|.-.|
T Consensus 82 ~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 82 RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 9999999999853 2344455 4679999996544
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.42 E-value=2.8e-13 Score=150.39 Aligned_cols=75 Identities=20% Similarity=0.397 Sum_probs=66.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++||+|.|+++ .+++++||+|++||++||+|+||||||||+++|+|+.+|++|+|.+ |.
T Consensus 317 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~ 380 (635)
T PRK11147 317 KIVFEMENVNYQIDGK---------------QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT 380 (635)
T ss_pred CceEEEeeeEEEECCe---------------EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC
Confidence 3469999999999542 5999999999999999999999999999999999999999999998 53
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++ .+||++|+.
T Consensus 381 ~~-----------~i~y~~q~~ 391 (635)
T PRK11147 381 KL-----------EVAYFDQHR 391 (635)
T ss_pred Cc-----------EEEEEeCcc
Confidence 32 599999963
No 331
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.42 E-value=3e-13 Score=147.98 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=66.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++|+++.|+++ .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|++++
T Consensus 320 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~- 383 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK---------------LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE- 383 (552)
T ss_pred CeEEEEeeEEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-
Confidence 3479999999999542 599999999999999999999999999999999999999999999843
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+ ..+||+||+.
T Consensus 384 ~-----------~~i~~v~q~~ 394 (552)
T TIGR03719 384 T-----------VKLAYVDQSR 394 (552)
T ss_pred c-----------eEEEEEeCCc
Confidence 2 1599999974
No 332
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=5.6e-14 Score=126.71 Aligned_cols=89 Identities=19% Similarity=0.394 Sum_probs=77.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
.++++++||.|+|+.- .+++++||+.++|+++.|+|.+|+||||.+++|.=+..|+.|.|.++|.
T Consensus 4 ~~~l~v~dlHK~~G~~---------------eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~ge 68 (256)
T COG4598 4 ENALEVEDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGE 68 (256)
T ss_pred ccceehhHHHhhcccc---------------hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCe
Confidence 3578999999999653 5999999999999999999999999999999999999999999999998
Q ss_pred ecCC------------cccHHHhhccEEEEccCCCc
Q 010435 484 SIRS------------SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~------------~~~~~~~r~~iG~cpQ~~~L 507 (510)
.|+- ..+++++|.++|+++|+--|
T Consensus 69 ei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNL 104 (256)
T COG4598 69 EIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNL 104 (256)
T ss_pred EEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcch
Confidence 7631 23467789999999996543
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=3.2e-13 Score=149.72 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=66.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++||+|.|+++ .+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~~---------------~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~ 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR---------------IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG 374 (638)
T ss_pred CceEEEEeeEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC
Confidence 3479999999999642 5999999999999999999999999999999999999999999999631
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
..+||+||+.
T Consensus 375 ------------~~igy~~Q~~ 384 (638)
T PRK10636 375 ------------IKLGYFAQHQ 384 (638)
T ss_pred ------------EEEEEecCcc
Confidence 2589999963
No 334
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.41 E-value=3e-13 Score=146.52 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=60.6
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++......+..|+.+||+||.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPED 346 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence 599999999999999999999999999999999999999999999999885322222346789999996
No 335
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.40 E-value=6.4e-13 Score=147.89 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=68.2
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++ ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|++.+++
T Consensus 450 ~~i~~~nv~~~~~~~--------------~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-- 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNG--------------DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-- 513 (659)
T ss_pred CeEEEEeeEEECCCC--------------CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--
Confidence 469999999999632 1599999999999999999999999999999999999999999998753
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+++|||||++.+
T Consensus 514 ----------~~~i~~v~Q~~~l 526 (659)
T TIGR00954 514 ----------KGKLFYVPQRPYM 526 (659)
T ss_pred ----------CCcEEEECCCCCC
Confidence 5679999998755
No 336
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.40 E-value=3.8e-13 Score=148.82 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=64.0
Q ss_pred CcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 433 ~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+++|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++. ..+.|+.+|||||+|.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~----~~~~~~~i~yv~Q~~~~ 110 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID----AKEMRAISAYVQQDDLF 110 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----HHHHhhhceeecccccc
Confidence 457999999999999999999999999999999999999885 799999999873 24678899999999865
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.40 E-value=2.5e-13 Score=133.86 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=62.4
Q ss_pred eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE----------
Q 010435 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL---------- 479 (510)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~---------- 479 (510)
.+|+|.|++. +.+++|+|+ +++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~~~~~~y~~~--------------~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~ 68 (255)
T cd03236 4 DEPVHRYGPN--------------SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILD 68 (255)
T ss_pred cCcceeecCc--------------chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhh
Confidence 3677888532 149999994 999999999999999999999999999999999996
Q ss_pred -EcCeecCCcccHHHhh---ccEEEEccCCC
Q 010435 480 -IYGFSIRSSVSMTNIQ---KSIGVCPQVTL 506 (510)
Q Consensus 480 -i~g~~i~~~~~~~~~r---~~iG~cpQ~~~ 506 (510)
++|.++.+. ..+.+ ..+++++|+..
T Consensus 69 ~~~g~~~~~~--~~~~~~~~~~i~~~~~~~~ 97 (255)
T cd03236 69 EFRGSELQNY--FTKLLEGDVKVIVKPQYVD 97 (255)
T ss_pred hccCchhhhh--hHHhhhcccceeeecchhc
Confidence 778877421 12222 24788888643
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=99.40 E-value=6.5e-13 Score=148.25 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=66.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++++++.|++. ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.+++
T Consensus 507 ~~L~~~~ls~~y~~~--------------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-- 570 (718)
T PLN03073 507 PIISFSDASFGYPGG--------------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-- 570 (718)
T ss_pred ceEEEEeeEEEeCCC--------------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC--
Confidence 569999999999542 1489999999999999999999999999999999999999999999864
Q ss_pred cCCcccHHHhhccEEEEccCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+..+||+||+.
T Consensus 571 ----------~~~igyv~Q~~ 581 (718)
T PLN03073 571 ----------KVRMAVFSQHH 581 (718)
T ss_pred ----------ceeEEEEeccc
Confidence 23699999974
No 339
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.38 E-value=1.1e-12 Score=138.74 Aligned_cols=89 Identities=19% Similarity=0.369 Sum_probs=76.0
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC----cceEEEc
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDALIY 481 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt----~G~i~i~ 481 (510)
.++++||++.|.... ..+.||+|+||++.+||++||+|.+||||||+...|.|+.++. +|+|.++
T Consensus 5 lL~V~nL~v~~~~~~-----------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~ 73 (539)
T COG1123 5 LLEVENLTVEFATDG-----------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILD 73 (539)
T ss_pred eEEEeceEEEEecCC-----------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEEC
Confidence 689999999997642 2357999999999999999999999999999999999999988 7999999
Q ss_pred CeecCCc--ccHHHhh-ccEEEEccCC
Q 010435 482 GFSIRSS--VSMTNIQ-KSIGVCPQVT 505 (510)
Q Consensus 482 g~~i~~~--~~~~~~r-~~iG~cpQ~~ 505 (510)
|.|+... .+++++| +.|+++||.+
T Consensus 74 g~dl~~l~~~~~r~~rg~~Ia~i~Q~p 100 (539)
T COG1123 74 GRDLLGLSEREMRKLRGKRIAMIFQDP 100 (539)
T ss_pred CcchhcCCHHHHHHhccccEEEEecCc
Confidence 9987532 2344444 6899999976
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.37 E-value=9.9e-13 Score=146.02 Aligned_cols=62 Identities=26% Similarity=0.452 Sum_probs=58.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
.+++++++|.|++. .+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~i~~ls~~~~~~---------------~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSFSDA---------------PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEeCCc---------------eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 48899999999642 599999999999999999999999999999999999999999999987
No 341
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.5e-12 Score=130.26 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=72.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|.... --|..||+++++||++-|+|.|||||||+++.|+|++.|++|+|++||.+
T Consensus 321 ~~lelrnvrfay~~~~--------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQDNA--------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCccc--------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc
Confidence 4799999999997642 25899999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEE
Q 010435 485 IRSSVSMTNIQKSIGVC 501 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~c 501 (510)
+.+ .+.++.|+...-+
T Consensus 387 V~~-e~ledYR~LfSav 402 (546)
T COG4615 387 VSA-EQLEDYRKLFSAV 402 (546)
T ss_pred CCC-CCHHHHHHHHHHH
Confidence 974 5688888765443
No 342
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.35 E-value=2.2e-12 Score=136.79 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=60.0
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||++.|++.. .+.+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus 20 ~mL~lknL~~~~~~~~------------~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~ 87 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE------------YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA 87 (549)
T ss_pred ceeEEEEEEEecCCCc------------cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence 4678888888885431 2359999999999999999999999999999999999999999999999975
No 343
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.34 E-value=1.1e-12 Score=126.88 Aligned_cols=60 Identities=38% Similarity=0.578 Sum_probs=53.5
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++. +.++.+||+||++.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~------~~~~~i~~v~q~~~~ 60 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG------KGWRHIGYVPQRHEF 60 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch------HhhCcEEEecccccc
Confidence 568899999999999999999999999999999999999998762 346789999998643
No 344
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.32 E-value=1.6e-12 Score=124.84 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=46.9
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE-EcCeec
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-IYGFSI 485 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~-i~g~~i 485 (510)
+++|+||++++||+++|+|||||||||++++|+|+.+|++|++. ++|..+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~ 52 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL 52 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee
Confidence 79999999999999999999999999999999999999999997 777543
No 345
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.3e-12 Score=119.00 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=55.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEE
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIG 499 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG 499 (510)
..+.++||++.+||.+-+.||||||||||+++|+|+.+|++|+|+++|..++ ...++.++.+-
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~--~~~~~~~~~l~ 78 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQ--NVRESYHQALL 78 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCc--cchhhHHHHHH
Confidence 6899999999999999999999999999999999999999999999999984 34444444433
No 346
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.30 E-value=2.9e-12 Score=125.71 Aligned_cols=59 Identities=29% Similarity=0.422 Sum_probs=51.4
Q ss_pred ceeeeeeEEEe-----CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435 435 HAIKGLWVNIA-----KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 435 ~av~~lsl~v~-----~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+.+++++|++. +||+++|+|+||||||||+++|+|+.+|++|+|.++|. .++|+||+..
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~ 71 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIK 71 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEeccccc
Confidence 36777777776 79999999999999999999999999999999999873 4788888653
No 347
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-12 Score=131.50 Aligned_cols=90 Identities=27% Similarity=0.412 Sum_probs=81.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...+...++++.|.+++ +.++++||+++.|+.++++|++|+||||++++|-+++.+++|.|.++|+
T Consensus 260 ~g~v~F~~V~F~y~~~r--------------~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~q 325 (497)
T COG5265 260 LGAVAFINVSFAYDPRR--------------PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ 325 (497)
T ss_pred cceEEEEEEEeeccccc--------------hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcch
Confidence 34689999999997642 6999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCcc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLFS 508 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L~ 508 (510)
|++. ...+.+|+.||++||+.+|-
T Consensus 326 dir~-vtq~slR~aIg~VPQDtvLF 349 (497)
T COG5265 326 DIRD-VTQQSLRRAIGIVPQDTVLF 349 (497)
T ss_pred hHHH-hHHHHHHHHhCcCcccceeh
Confidence 9974 45678999999999999884
No 348
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.30 E-value=6.6e-12 Score=110.28 Aligned_cols=83 Identities=24% Similarity=0.447 Sum_probs=70.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCe
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGF 483 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~ 483 (510)
+.++|++..-+++ ..+.++|++|.+|||+.|.||+||||||+++-+.|.+.+. +|++++++.
T Consensus 3 l~l~nvsl~l~g~---------------cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~ 67 (213)
T COG4136 3 LCLKNVSLRLPGS---------------CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ 67 (213)
T ss_pred eeeeeeeecCCCc---------------eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCe
Confidence 4567777655443 3899999999999999999999999999999999999875 699999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++. ..-..||++|+.+|++.|
T Consensus 68 ~l~---~lPa~qRq~GiLFQD~lL 88 (213)
T COG4136 68 RLD---MLPAAQRQIGILFQDALL 88 (213)
T ss_pred ecc---ccchhhhheeeeeccccc
Confidence 884 234568899999999865
No 349
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.7e-12 Score=116.29 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=69.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee-
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS- 484 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~- 484 (510)
.+.+++++|+|---.. ..-..++++++||+|+.|||++|=||+||||||++++|-|-+.|++|+|.+.-.+
T Consensus 4 ~l~v~~~~KtFtlH~q--------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ--------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeec--------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcc
Confidence 5788999998832110 0112368999999999999999999999999999999999999999999996322
Q ss_pred ---cC--CcccHHHh-hccEEEEccC
Q 010435 485 ---IR--SSVSMTNI-QKSIGVCPQV 504 (510)
Q Consensus 485 ---i~--~~~~~~~~-r~~iG~cpQ~ 504 (510)
+- ...+.-++ |+.+||+.|+
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQF 101 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHH
Confidence 11 11223333 5679999997
No 350
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.29 E-value=5.4e-12 Score=135.38 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=67.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++++++.|+++ +.++++||++.+|+++||+|+|||||||++++|+|...|++|+|...+.
T Consensus 3 ~i~~~~ls~~~g~~---------------~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAYGDR---------------PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEeeCCc---------------eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--
Confidence 58899999999653 6999999999999999999999999999999999999999999998652
Q ss_pred CCcccHHHhhccEEEEccCCCcc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLFS 508 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L~ 508 (510)
-++||.+|+..+.
T Consensus 66 ----------~~v~~l~Q~~~~~ 78 (530)
T COG0488 66 ----------LRVGYLSQEPPLD 78 (530)
T ss_pred ----------ceEEEeCCCCCcC
Confidence 2589999977553
No 351
>PRK13409 putative ATPase RIL; Provisional
Probab=99.29 E-value=6.1e-12 Score=137.94 Aligned_cols=73 Identities=25% Similarity=0.311 Sum_probs=64.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...+++++++|.|++ ..++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++
T Consensus 338 ~~~l~~~~ls~~~~~----------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLGD----------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-- 399 (590)
T ss_pred ceEEEEcceEEEECC----------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--
Confidence 346999999999953 25899999999999999999999999999999999999999999884
Q ss_pred ecCCcccHHHhhccEEEEccCCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+ .+||+||+..
T Consensus 400 -~-----------~i~y~~Q~~~ 410 (590)
T PRK13409 400 -L-----------KISYKPQYIK 410 (590)
T ss_pred -e-----------eEEEeccccc
Confidence 1 4899999754
No 352
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.29 E-value=2.9e-12 Score=113.76 Aligned_cols=84 Identities=21% Similarity=0.405 Sum_probs=73.5
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
+|+++++++.|+.. .|+-|++|+.++||.+.||||+||||||+++.|.=+.-|.+|+..|.|..-
T Consensus 2 sirv~~in~~yg~~---------------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFYGAH---------------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred ceEEcccccccccc---------------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccc
Confidence 48899999999653 699999999999999999999999999999999999999999999988543
Q ss_pred C-----CcccHHHhhccEEEEccC
Q 010435 486 R-----SSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 486 ~-----~~~~~~~~r~~iG~cpQ~ 504 (510)
. ..+...+.|+.+|+++|.
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqq 90 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQ 90 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhh
Confidence 1 123567789999999984
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.28 E-value=3.7e-12 Score=151.59 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=64.5
Q ss_pred CCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 431 TSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 431 ~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+..+.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+ . ..|+.+|||+|+|.+
T Consensus 175 ~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~---~-~~~~~i~yv~Q~d~~ 250 (1470)
T PLN03140 175 KTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE---F-VPRKTSAYISQNDVH 250 (1470)
T ss_pred CccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh---h-cccceeEEecccccC
Confidence 34567999999999999999999999999999999999999998 9999999998742 2 237889999999864
No 354
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=3.5e-12 Score=114.56 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=69.6
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
++-+++++|+|.|++. ..-+++||++++||+.||+|.+|+||||++++|+|-+.|++|+|.+.-.
T Consensus 4 ~PLL~V~~lsk~Yg~~---------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r 68 (258)
T COG4107 4 KPLLSVSGLSKLYGPG---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR 68 (258)
T ss_pred CcceeehhhhhhhCCC---------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence 3468999999999764 3678999999999999999999999999999999999999999988653
Q ss_pred ecC--CcccH------HHhhccEEEEccCC
Q 010435 484 SIR--SSVSM------TNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~--~~~~~------~~~r~~iG~cpQ~~ 505 (510)
+-. +...+ .-.|..=|++.|++
T Consensus 69 ~~~~~dl~~msEaeRR~L~RTeWG~VhQnP 98 (258)
T COG4107 69 DGQPRDLYTMSEAERRRLLRTEWGFVHQNP 98 (258)
T ss_pred CCCchhHhhhchHHHHHHhhhccceeecCc
Confidence 311 01111 12356679999975
No 355
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.28 E-value=4.3e-12 Score=151.29 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=63.1
Q ss_pred CcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc----cCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT----PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 433 ~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~----~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+++|+|+.+++||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.+ ...+.|+.+||++|+|.+
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~--~~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE--IKKHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHH--HHhhcCceeEEecccccc
Confidence 457999999999999999999999999999999999986 5789999999998732 123457789999998854
No 356
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.28 E-value=5.4e-12 Score=106.51 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=54.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
.|+++++|++++||+++|+||||||||||++++. +|++.++|.|+.. .+.++.++..+++||.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~-~~~~~~~~~~~~~~q~ 65 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE-IREDSKDELIGRNPEL 65 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH-hhhhhcCCEEEEechh
Confidence 6999999999999999999999999999999986 8999999999852 3344556778888886
No 357
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.27 E-value=1.1e-11 Score=124.75 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=82.9
Q ss_pred CCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
.+..++.++++..|+-+.. + .++.-...+|||++||++++||.+||+|.+||||||+-..|.++++++ |+|..+|
T Consensus 273 ~~~ll~~~~v~v~f~i~~g---~-~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G 347 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGG---F-LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDG 347 (534)
T ss_pred CCceEEecceEEEEecCCc---c-ccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECC
Confidence 3567899999999976532 2 122334568999999999999999999999999999999999999987 9999999
Q ss_pred eecCC--cccHHHhhccEEEEccCC
Q 010435 483 FSIRS--SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 483 ~~i~~--~~~~~~~r~~iG~cpQ~~ 505 (510)
.++.. ..++..+|+++.+|+|++
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDP 372 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDP 372 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCC
Confidence 99953 356888999999999976
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=99.25 E-value=4.1e-12 Score=139.32 Aligned_cols=69 Identities=28% Similarity=0.320 Sum_probs=55.4
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE-----------EcCeecCCcc-cHHHhhccEEEEc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-----------IYGFSIRSSV-SMTNIQKSIGVCP 502 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~-----------i~g~~i~~~~-~~~~~r~~iG~cp 502 (510)
.+|++++ .+++||++||+|||||||||++++|+|+++|++|++. ++|.++.+.. ...+.+..+++.|
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~ 166 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKP 166 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecc
Confidence 4899999 9999999999999999999999999999999999997 8998873210 1111233467777
Q ss_pred cC
Q 010435 503 QV 504 (510)
Q Consensus 503 Q~ 504 (510)
|.
T Consensus 167 q~ 168 (590)
T PRK13409 167 QY 168 (590)
T ss_pred cc
Confidence 74
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.23 E-value=2e-11 Score=147.07 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=67.5
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|+++.|++.. ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~~-------------~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWARDL-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCCCC-------------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---
Confidence 699999999996431 2589999999999999999999999999999999999999999999976
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++|||||.+.+
T Consensus 700 -----------~i~yv~Q~~~l 710 (1522)
T TIGR00957 700 -----------SVAYVPQQAWI 710 (1522)
T ss_pred -----------EEEEEcCCccc
Confidence 48999998654
No 360
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.22 E-value=3.3e-11 Score=132.54 Aligned_cols=90 Identities=23% Similarity=0.356 Sum_probs=75.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC---CcceEEE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALI 480 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p---t~G~i~i 480 (510)
...+.+++++..-+++. ++.++.++|||..+++||++|++||+|||||||+++|+|-.+. .+|+|.+
T Consensus 23 ~~~~~~~~~~~~~~~~~----------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilv 92 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS----------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL 92 (613)
T ss_pred cceeEEEEEEEEecCCC----------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEE
Confidence 34577888887775431 1245799999999999999999999999999999999999975 7899999
Q ss_pred cCeecCCcccHHHhhccEEEEccCCCc
Q 010435 481 YGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 481 ~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
||+.. +.+..++..||++|+|++
T Consensus 93 NG~~~----~~~~~~~~s~yV~QdD~l 115 (613)
T KOG0061|consen 93 NGRPR----DSRSFRKISGYVQQDDVL 115 (613)
T ss_pred CCccC----chhhhhheeEEEcccccc
Confidence 99654 456889999999999985
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.17 E-value=4.6e-11 Score=128.29 Aligned_cols=76 Identities=25% Similarity=0.378 Sum_probs=67.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++|++|.|++. +..++++||.|.+|+.+||+||||+|||||+|+|+|...|.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~~~--------------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYDGG--------------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccCCC--------------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc
Confidence 5679999999999653 16899999999999999999999999999999999999999999998531
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
-++||.+|+.
T Consensus 385 ------------v~igyf~Q~~ 394 (530)
T COG0488 385 ------------VKIGYFDQHR 394 (530)
T ss_pred ------------eEEEEEEehh
Confidence 2589999975
No 362
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.16 E-value=3.5e-11 Score=111.78 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=50.9
Q ss_pred cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+.|++|+||++++||+++|+||||||||||++++. +++|++.++|..-. ..++.++|++|..
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~------~~~~~~~~~~q~~ 69 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPK------FSRNKLIFIDQLQ 69 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccc------cccccEEEEhHHH
Confidence 47999999999999999999999999999999985 37999999876321 1144688888843
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.11 E-value=1.3e-10 Score=129.91 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=56.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc---cCCcceEEEc
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDALIY 481 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~---~pt~G~i~i~ 481 (510)
..|+++|++|.|+++ .+++|+||+|.+||++||+|+||||||||+++|+|.. .|++|+|...
T Consensus 176 ~~I~i~nls~~y~~~---------------~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~ 240 (718)
T PLN03073 176 KDIHMENFSISVGGR---------------DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHV 240 (718)
T ss_pred eeEEEceEEEEeCCC---------------EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEE
Confidence 459999999999642 5999999999999999999999999999999999964 5889999765
Q ss_pred Cee
Q 010435 482 GFS 484 (510)
Q Consensus 482 g~~ 484 (510)
+++
T Consensus 241 ~Q~ 243 (718)
T PLN03073 241 EQE 243 (718)
T ss_pred ecc
Confidence 443
No 364
>PLN03232 ABC transporter C family member; Provisional
Probab=99.09 E-value=1.5e-10 Score=139.46 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=67.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++. ++.+++|+||++++||.++|+|++||||||+++.|.|+++|++|.+.
T Consensus 613 ~~I~~~~vsF~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----- 675 (1495)
T PLN03232 613 PAISIKNGYFSWDSKT------------SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----- 675 (1495)
T ss_pred CcEEEEeeEEEcCCCC------------CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----
Confidence 3699999999997531 12589999999999999999999999999999999999999998763
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+|+++|||||++.|
T Consensus 676 --------~~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 676 --------VIRGSVAYVPQVSWI 690 (1495)
T ss_pred --------EecCcEEEEcCcccc
Confidence 246789999998755
No 365
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.1e-10 Score=112.61 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=57.8
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc---ccHHHhhccEEEEccCCCc
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS---VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~---~~~~~~r~~iG~cpQ~~~L 507 (510)
+++|+.+...+++|-|++||||||++|||+|+.+|+.|.|.++|.-+.+. -....-++++|||+|+--|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL 87 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccc
Confidence 57888888899999999999999999999999999999999999866321 1233457899999997643
No 366
>PLN03130 ABC transporter C family member; Provisional
Probab=99.08 E-value=1.8e-10 Score=139.22 Aligned_cols=77 Identities=21% Similarity=0.398 Sum_probs=67.5
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc-ceEEEcCe
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGF 483 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~-G~i~i~g~ 483 (510)
..++++|+++.|+.+. ++.+++|+||++++||.++|+|++||||||+++.|.|+++|++ |+|.+
T Consensus 613 ~~I~~~nvsf~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--- 677 (1622)
T PLN03130 613 PAISIKNGYFSWDSKA------------ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--- 677 (1622)
T ss_pred CceEEEeeEEEccCCC------------CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---
Confidence 3699999999996431 1258999999999999999999999999999999999999999 89874
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|++++||||.+.|
T Consensus 678 -----------~~~Iayv~Q~p~L 690 (1622)
T PLN03130 678 -----------RGTVAYVPQVSWI 690 (1622)
T ss_pred -----------cCeEEEEcCcccc
Confidence 4579999998755
No 367
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.04 E-value=2.6e-10 Score=137.20 Aligned_cols=59 Identities=24% Similarity=0.427 Sum_probs=55.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| ++|||||+..|
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------~iayv~Q~~~l 498 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------RISFSPQTSWI 498 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------------EEEEEeCCCcc
Confidence 589999999999999999999999999999999999999999999987 38999998654
No 368
>PTZ00243 ABC transporter; Provisional
Probab=98.99 E-value=5.7e-10 Score=134.57 Aligned_cols=60 Identities=23% Similarity=0.399 Sum_probs=54.8
Q ss_pred cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++ +++|||||++.+
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------------~~i~yv~Q~~~l 732 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------------RSIAYVPQQAWI 732 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------------CeEEEEeCCCcc
Confidence 369999999999999999999999999999999999999999999762 469999998654
No 369
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.97 E-value=1.2e-09 Score=110.19 Aligned_cols=92 Identities=24% Similarity=0.409 Sum_probs=76.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-----CcceE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA 478 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-----t~G~i 478 (510)
.+.+.++||+..|.... ..+.||+++||++++||.++|+|.+|||||-|...+.|+++- -+|+|
T Consensus 4 ~~lL~v~nLsV~f~~~~-----------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i 72 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG-----------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72 (534)
T ss_pred CcceeeeccEEEEecCC-----------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee
Confidence 35689999999996532 245799999999999999999999999999999999999876 25899
Q ss_pred EEcCeecCC--cccHHHhhc-cEEEEccCCC
Q 010435 479 LIYGFSIRS--SVSMTNIQK-SIGVCPQVTL 506 (510)
Q Consensus 479 ~i~g~~i~~--~~~~~~~r~-~iG~cpQ~~~ 506 (510)
.++|.|+-. ..++..+|. +||+++|.+.
T Consensus 73 ~f~G~dll~~se~~lr~iRG~~I~MIFQEPM 103 (534)
T COG4172 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPM 103 (534)
T ss_pred EEcChhhhcCCHHHHhhhcccceEEEecccc
Confidence 999999842 234566664 7999999874
No 370
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.95 E-value=4.6e-10 Score=117.07 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=53.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCeecCC--cccHHHhhccEEEEcc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSIRS--SVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~i~~--~~~~~~~r~~iG~cpQ 503 (510)
.||+++|+++++||+++|+|||||||||+++ .|+..|++| +|.++|.++.. ...++.+| +++|
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR----~VFQ 85 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD----EIFD 85 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH----HHHH
Confidence 5899999999999999999999999999999 788888888 79999999853 23344555 6666
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.86 E-value=9.8e-10 Score=104.20 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=52.2
Q ss_pred eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc---------ceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---------GDALIYGFSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~---------G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+++++++++| +++|+|||||||||++++|+|+.+|.. |++.++|.++.. ...++++|++||+.-
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~vfq~~~ 86 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK----PANFAEVTLTFDNSD 86 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC----CCceEEEEEEEEcCC
Confidence 6789999999 999999999999999999999987663 467777776532 123578999999764
No 372
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.82 E-value=1.1e-08 Score=118.93 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=68.2
Q ss_pred CCceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
.+.++++++.+....+.. +...++|+||+|++||.+|++|+.|||||+|++.|.|..+..+|++.++|
T Consensus 515 ~~~~i~i~~~sfsW~~~~------------~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g 582 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSES------------PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG 582 (1381)
T ss_pred CCceEEEeeeeEecCCCC------------CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence 356799999998886521 22499999999999999999999999999999999999999999999987
Q ss_pred eecCCcccHHHhhccEEEEccCCC
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
. ++||||..-
T Consensus 583 s--------------iaYv~Q~pW 592 (1381)
T KOG0054|consen 583 S--------------VAYVPQQPW 592 (1381)
T ss_pred e--------------EEEeccccH
Confidence 3 899999763
No 373
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.78 E-value=1.4e-08 Score=93.97 Aligned_cols=69 Identities=28% Similarity=0.394 Sum_probs=62.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+.+|+++++++.|+... +.+-|+|++++.|...-|+|.|||||||++++|+|-.-...|.|.+.|.
T Consensus 11 ~~aievsgl~f~y~~~d--------------P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgr 76 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--------------PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGR 76 (291)
T ss_pred cceEEEeccEEecccCC--------------ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCc
Confidence 45899999999997652 6899999999999999999999999999999999988888899999998
Q ss_pred ecC
Q 010435 484 SIR 486 (510)
Q Consensus 484 ~i~ 486 (510)
+-.
T Consensus 77 saF 79 (291)
T KOG2355|consen 77 SAF 79 (291)
T ss_pred Ccc
Confidence 753
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.77 E-value=3.9e-09 Score=95.32 Aligned_cols=66 Identities=26% Similarity=0.431 Sum_probs=54.4
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
-+-.+|.++..||+.-++|||||||||++--++|+++ .+|+|.++|.++.. ....+..++-.|..|
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~-~~~~eLArhRAYLsQ 79 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEA-WSATELARHRAYLSQ 79 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhH-HhHhHHHHHHHHHhh
Confidence 4778999999999999999999999999999999976 68999999999853 344454444455555
No 375
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.73 E-value=2.9e-08 Score=104.01 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=70.1
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC-
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG- 482 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g- 482 (510)
...++.+++++.|... ..+++.++ .+.+||+++|+|++|+||||++++|+|+.+|+.|.+.+.|
T Consensus 137 p~~~~r~~v~~~l~TG--------------i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGe 201 (450)
T PRK06002 137 PPAMTRARVETGLRTG--------------VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGE 201 (450)
T ss_pred CCCeEeecceEEcCCC--------------cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeeccc
Confidence 4568999999999643 25899996 9999999999999999999999999999999999998864
Q ss_pred --eecCC--cccHHHh-hccEEEEccCCC
Q 010435 483 --FSIRS--SVSMTNI-QKSIGVCPQVTL 506 (510)
Q Consensus 483 --~~i~~--~~~~~~~-r~~iG~cpQ~~~ 506 (510)
.++.. ...+... ++.+++++|.|-
T Consensus 202 rgrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 202 RGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 55421 0122223 468999999773
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.69 E-value=6.2e-09 Score=101.86 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=47.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc----------------CCccCCcc--------eEEEcCeecCC--c
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT----------------GITPVTGG--------DALIYGFSIRS--S 488 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~----------------G~~~pt~G--------~i~i~g~~i~~--~ 488 (510)
.++++++ |++++|+|||||||||++++|+ +++.+++| ++.+++.+-.. .
T Consensus 16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~ 90 (243)
T cd03272 16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID 90 (243)
T ss_pred cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence 5788876 8999999999999999999997 55666666 55555532110 0
Q ss_pred ccHHHhhccEEEEccCCC
Q 010435 489 VSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 489 ~~~~~~r~~iG~cpQ~~~ 506 (510)
.+...+++.+|++||.-.
T Consensus 91 ~~~~~i~r~ig~~~~~~~ 108 (243)
T cd03272 91 KEEVRLRRTIGLKKDEYF 108 (243)
T ss_pred CCEEEEEEEEECCCCEEE
Confidence 122245778999988643
No 377
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.68 E-value=2e-08 Score=99.53 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=51.9
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.++++|+|||||||++++|+|+++|++|++.++|.++....+..++.+.++++||+++-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccc
Confidence 678999999999999999999999999999999999985322356777788999998753
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.65 E-value=1.5e-08 Score=105.85 Aligned_cols=68 Identities=25% Similarity=0.280 Sum_probs=60.6
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
.+.+.+.|+++.|.+.. ...++++|.+..++.++++|||||||||++|+++|++.|+.|.+.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~~~--------------~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--------------MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCCcc--------------hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence 56789999999997642 4899999999999999999999999999999999999999999987665
Q ss_pred ec
Q 010435 484 SI 485 (510)
Q Consensus 484 ~i 485 (510)
.+
T Consensus 453 ~~ 454 (614)
T KOG0927|consen 453 NK 454 (614)
T ss_pred cc
Confidence 43
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.60 E-value=1e-08 Score=98.37 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=39.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhh-ccEEEEccCCCc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ-KSIGVCPQVTLF 507 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r-~~iG~cpQ~~~L 507 (510)
.+++++++ +++||+|||||||||++++|+ ++.|.+. ...| +++|+++|...+
T Consensus 18 ~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~------~~~~~~~i~~~~~~~~~ 70 (212)
T cd03274 18 QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA------SKMRQKKLSDLIHNSAG 70 (212)
T ss_pred eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH------HHhhhhhHHHHhcCCCC
Confidence 58999987 899999999999999999997 4455443 1222 467888876543
No 380
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.55 E-value=1.9e-07 Score=98.32 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=67.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..+++++++..-+.+. ...++++||+|++|+.+-|.||||+|||+|+++|.|+-|.++|++.--..
T Consensus 431 Dn~i~~e~v~l~tPt~g-------------~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~ 497 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNG-------------DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD 497 (659)
T ss_pred cceEEeeeeeecCCCCC-------------ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc
Confidence 47899999999887641 16899999999999999999999999999999999999999999976542
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.- -+.+=|+||.+
T Consensus 498 ~~---------~~~lfflPQrP 510 (659)
T KOG0060|consen 498 GG---------PKDLFFLPQRP 510 (659)
T ss_pred CC---------CCceEEecCCC
Confidence 21 14588899976
No 381
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.53 E-value=5.5e-08 Score=94.29 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.9
Q ss_pred cceeeeeeEEEeCCcEEEEecCCCCchhHHH-HHH
Q 010435 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI-SCL 467 (510)
Q Consensus 434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~-~~l 467 (510)
++||+++||++++||++||+|+||||||||+ ..+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999995 444
No 382
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.52 E-value=1.1e-07 Score=99.73 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=53.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce---EEEcCeecCCc-----ccHHHhhccEEEEccCCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD---ALIYGFSIRSS-----VSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~---i~i~g~~i~~~-----~~~~~~r~~iG~cpQ~~~ 506 (510)
.|++++ +.+.+||+++|+|+||+|||||+++|+|..+++.+. +-.+|.+++.- .+....|..++++||++.
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 699999 999999999999999999999999999999988643 33334333210 001123567999999863
No 383
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.48 E-value=5.9e-07 Score=93.43 Aligned_cols=87 Identities=14% Similarity=0.276 Sum_probs=72.3
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...+++++|+..=+. ...+|+++||+|++|||+||.|..|-|-+-|+..|+|+.+|.+|+|.++|.
T Consensus 255 ~~vL~V~~L~v~~~~--------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~ 320 (501)
T COG3845 255 EVVLEVEDLSVKDRR--------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGK 320 (501)
T ss_pred CeEEEEeeeEeecCC--------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCE
Confidence 567899999865432 236999999999999999999999999999999999999998999999999
Q ss_pred ec-CCcccHHHhhccEEEEccC
Q 010435 484 SI-RSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 484 ~i-~~~~~~~~~r~~iG~cpQ~ 504 (510)
++ ......+..+..+||+|.+
T Consensus 321 ~v~~~~~~~~~r~~G~~~VPed 342 (501)
T COG3845 321 DVLGRLSPRERRRLGLAYVPED 342 (501)
T ss_pred eccccCCHHHHHhcCCccCChh
Confidence 97 3223344456689999864
No 384
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.44 E-value=2.7e-07 Score=97.30 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=58.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCc-------ccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-------VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~-------~~~~~~r~~iG~cpQ~~ 505 (510)
+++|++ +.+.+||+++|+|+||+||||++++|+|..+|+.|.+.+.|.+-++. .+.+.+++.++++.+.|
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 589999 99999999999999999999999999999999999999965443211 12234678899998755
No 385
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.42 E-value=1.3e-07 Score=90.71 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=44.3
Q ss_pred eeeeEEEe-CCcEEEEecCCCCchhHHHHHHcC-CccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 438 KGLWVNIA-KDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 438 ~~lsl~v~-~gei~~llG~nGaGKsTl~~~l~G-~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++++|... +|++++|+|+|||||||++++|++ ++.+..+....+. .. +.....+.+..+++.+|.+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-~~-~~~~~~~~~~~v~~~f~~~ 85 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-LR-SVFAPGEDTAEVSFTFQLG 85 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchh-HH-HHhcCCCccEEEEEEEEEC
Confidence 56667654 599999999999999999999996 4445555554431 10 0111223466789888865
No 386
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.41 E-value=6.6e-07 Score=94.56 Aligned_cols=69 Identities=22% Similarity=0.415 Sum_probs=63.2
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
.++|+||++++|||+||-|--|||+|-+++.|-|..++++|+|.++|.+++-....+.++..+||||-+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ED 342 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPED 342 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcc
Confidence 589999999999999999999999999999999999999999999999886545677888999999963
No 387
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.39 E-value=1.7e-07 Score=88.01 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=49.9
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
..+=+.+.+++|+.++++|+||||||||++.|+|+++|+.|.+.+.+..-. .. ..+..++++.|.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~---~~-~~~~~~~~~~~~ 78 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAEL---QL-PHPNWVRLVTRP 78 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCcccc---CC-CCCCEEEEEEec
Confidence 445566778999999999999999999999999999999999999764321 11 123446666554
No 388
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.35 E-value=9e-07 Score=92.32 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=62.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
.+|.++|+-..-+... ..|..++|+|++|-..-|+||||||||+++++|.|+-|.-.|..++-
T Consensus 480 ~gI~lenIpvItP~~~--------------vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P--- 542 (728)
T KOG0064|consen 480 NGIILENIPVITPAGD--------------VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP--- 542 (728)
T ss_pred cceEEecCceeccCcc--------------eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC---
Confidence 3577888777765431 58999999999999999999999999999999999999866666552
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. +.+|-|.||.+-.
T Consensus 543 ----~-----~~~mFYIPQRPYm 556 (728)
T KOG0064|consen 543 ----R-----PNNIFYIPQRPYM 556 (728)
T ss_pred ----C-----CcceEeccCCCcc
Confidence 1 3459999997643
No 389
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.35 E-value=2.6e-07 Score=88.09 Aligned_cols=59 Identities=27% Similarity=0.333 Sum_probs=44.3
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHH----cCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCL----TGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l----~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+++.+| +++|+|||||||||+++.| .|..+|++|.+.-+...+. ....+..+++++|++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~----~~~~~~~v~~~f~~~ 80 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR----EGEVRAQVKLAFENA 80 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh----CCCCcEEEEEEEEeC
Confidence 445566 9999999999999999999 5999999887762222221 123466899999976
No 390
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=4.9e-07 Score=92.14 Aligned_cols=63 Identities=25% Similarity=0.421 Sum_probs=56.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i 480 (510)
++.+-++++++.|++.. +..+.++|.|.=...++|+||||.||||++++|+|-+.|+.|+..-
T Consensus 584 PPvLGlH~VtFgy~gqk--------------pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK 646 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQK--------------PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK 646 (807)
T ss_pred CCeeecccccccCCCCC--------------chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc
Confidence 56789999999997652 5889999999999999999999999999999999999999987643
No 391
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.32 E-value=1.5e-06 Score=93.68 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=65.3
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++|++..-++.. .-|+++++++++||-+-|.|+|||||||+++.|+|+-|--+|++..-.
T Consensus 390 ~~~i~~~nl~l~~p~~~--------------~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~- 454 (604)
T COG4178 390 DHGITLENLSLRTPDGQ--------------TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA- 454 (604)
T ss_pred cceeEEeeeeEECCCCC--------------eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-
Confidence 46799999999887641 589999999999999999999999999999999999999999887751
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
...+=|.||.+-+
T Consensus 455 -----------~~~~lflpQ~PY~ 467 (604)
T COG4178 455 -----------DSALLFLPQRPYL 467 (604)
T ss_pred -----------CCceEEecCCCCC
Confidence 1235677776644
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.27 E-value=9.6e-07 Score=90.79 Aligned_cols=57 Identities=30% Similarity=0.411 Sum_probs=44.5
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~ 477 (510)
..+...+++|.|++- .|.-=.=+++.||++|++||||-||||..++|+|.++|++|.
T Consensus 341 ~lv~y~~~~k~~g~F----------------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 341 TLVEYPDLKKTYGDF----------------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred eeeecchheeecCce----------------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 346777777877542 222222356788999999999999999999999999999996
No 393
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.24 E-value=1.6e-06 Score=91.00 Aligned_cols=62 Identities=26% Similarity=0.448 Sum_probs=55.2
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i 480 (510)
...+++.++++.|.+. ..++|.+|++.+||..||+|+|||||||++++|+|-..|..-++-+
T Consensus 73 s~dvk~~sls~s~~g~---------------~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~ 134 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV---------------ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF 134 (614)
T ss_pred cccceeeeeeeccCCc---------------eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence 4579999999999654 6899999999999999999999999999999999999887765544
No 394
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.23 E-value=6.7e-07 Score=88.06 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=43.4
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCe-ecCCcccH-HHhhccEEEEccCC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGF-SIRSSVSM-TNIQKSIGVCPQVT 505 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~-~i~~~~~~-~~~r~~iG~cpQ~~ 505 (510)
..+++|+|+|||||||++++|.+++.++ .|++...|. ++...... ...+..+++.+|.+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~ 86 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNS 86 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcC
Confidence 5799999999999999999999999887 468888776 43111111 12245899999974
No 395
>PRK08149 ATP synthase SpaL; Validated
Probab=98.21 E-value=1.9e-06 Score=90.29 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=54.8
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc---ceEEEcCeecCCccc--HH-HhhccEEEEcc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIYGFSIRSSVS--MT-NIQKSIGVCPQ 503 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~---G~i~i~g~~i~~~~~--~~-~~r~~iG~cpQ 503 (510)
+|++++ +.+.+||+++|+|+||+||||++++|++...++. |.|..+|.++..-.+ .+ ..+++++++..
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~ 213 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYA 213 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEE
Confidence 699999 9999999999999999999999999999999887 889999988742111 11 12356777754
No 396
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.16 E-value=1.2e-06 Score=88.97 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=44.1
Q ss_pred cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--------ccCCcceEEEcC
Q 010435 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIYG 482 (510)
Q Consensus 434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--------~~pt~G~i~i~g 482 (510)
..+++|+||++++|++.++.|++||||||+++||.|. +.|++|.+.+--
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 3699999999999999999999999999999999985 478999988743
No 397
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.15 E-value=1.6e-06 Score=80.62 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=39.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
+||+++++|+|||||||+++.|+|++.+ +.++|.++....+.++. ..|+.+|+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~--~~g~~~~~ 54 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKM--SQGIPLTD 54 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHH--hcCCCCCc
Confidence 5899999999999999999999999877 58999887432222222 34555554
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.14 E-value=2.4e-06 Score=79.58 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=64.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC----CcceEEEcC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIYG 482 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p----t~G~i~i~g 482 (510)
+.++||+..+..+. +.++|||++|+++.+|||-||+|.+|+|||-..+.|+|..+- |..+...+.
T Consensus 4 LDIrnL~IE~~Tsq-----------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~ 72 (330)
T COG4170 4 LDIRNLTIEFKTSQ-----------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD 72 (330)
T ss_pred ccccceEEEEecCC-----------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhccccc
Confidence 45778887776543 246799999999999999999999999999999999998753 445555665
Q ss_pred eecCCcc---cHHHhhccEEEEccCC
Q 010435 483 FSIRSSV---SMTNIQKSIGVCPQVT 505 (510)
Q Consensus 483 ~~i~~~~---~~~~~r~~iG~cpQ~~ 505 (510)
.|+-..+ ..+-+-+.+.+.+|.+
T Consensus 73 idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 73 IDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred chhhcCChHHhhhhhccchhhhhcCc
Confidence 5542211 1222345677888865
No 399
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.12 E-value=3.3e-06 Score=85.62 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=45.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
++++++ +.+.+||+++|+|+||+||||++++|+|...|+.|.+..-|.+
T Consensus 58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 599999 9999999999999999999999999999999998888776644
No 400
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.08 E-value=2.1e-06 Score=83.38 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=40.9
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccCCcce----EEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGD----ALIYGFSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~----i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
..++||.|+|||||||+++.|++.+++++|. +..++.... ...++..|++++.+.
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~-----~~~~~~~g~~~~~~~ 91 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD-----NAVLDAHGLRPRKGA 91 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC-----HHHHHhcccccccCC
Confidence 4699999999999999999999999999998 444544321 123345677776443
No 401
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.08 E-value=4.4e-06 Score=78.39 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=41.8
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
|++++|+|||||||||++++|++...+ .+.+.+..+... .....++.+++.+|.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRP-ASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCc-cchhHHhheeEcHHH
Confidence 789999999999999999999998876 577777766432 223345678888774
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.07 E-value=2.3e-06 Score=81.23 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=30.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.+.+|++++. |++++|+|||||||||++++|+|..
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4778888776 7999999999999999999998855
No 403
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.07 E-value=4.4e-06 Score=87.66 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=55.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
+.++.+.+++.+... ++|++++ +.+.+||.++|+|+||+||||++++|+|...++.|.+...|..
T Consensus 128 ~~~~r~~v~~~l~tG--------------i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG--------------IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC--------------ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 456777777777432 2699999 9999999999999999999999999999999999888776654
No 404
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.06 E-value=3.8e-06 Score=79.77 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=37.5
Q ss_pred eeeeeeEEEeCCc-EEEEecCCCCchhHHHHHHc--------CCccCCcceEE
Q 010435 436 AIKGLWVNIAKDQ-LFCLLGPNGAGKTTTISCLT--------GITPVTGGDAL 479 (510)
Q Consensus 436 av~~lsl~v~~ge-i~~llG~nGaGKsTl~~~l~--------G~~~pt~G~i~ 479 (510)
.+.++|+++.+|+ +++|.||||+||||++++|. |.+.|....+.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~ 68 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSS 68 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccccc
Confidence 5678999999995 89999999999999999999 87777654443
No 405
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=6.2e-06 Score=94.73 Aligned_cols=70 Identities=21% Similarity=0.371 Sum_probs=61.0
Q ss_pred cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
...++|+|.-+++||.+-+|||.||||||+++.|+|-.+-. .|+|..+|++.+ +... ++.++||+|+|+.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~---e~~~-~~~~aY~~e~DvH 200 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLK---EFVP-KKTVAYNSEQDVH 200 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccc---cccc-CceEEeccccccc
Confidence 46999999999999999999999999999999999977543 579999999974 2333 8899999999975
No 406
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.01 E-value=4.3e-06 Score=87.72 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=53.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc---ceEEEcCeecCCcc--cHHHhhccEEEEccC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIYGFSIRSSV--SMTNIQKSIGVCPQV 504 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~---G~i~i~g~~i~~~~--~~~~~r~~iG~cpQ~ 504 (510)
+|+|.+ +.+.+||+++|+|+||+||||++++|+|+.+|+. |.|..+|.++.... ....-.+..+++.|.
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~ 237 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAA 237 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEE
Confidence 478777 9999999999999999999999999999999986 89999998873210 011112356666664
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.99 E-value=5.6e-06 Score=84.14 Aligned_cols=60 Identities=25% Similarity=0.243 Sum_probs=48.0
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cH--HHhhccEEEEccC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SM--TNIQKSIGVCPQV 504 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~--~~~r~~iG~cpQ~ 504 (510)
++|++++++||||+|||||+..|++.+.+..|+|.+-+.|..... +. ...+..+++++|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~ 176 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK 176 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC
Confidence 568999999999999999999999999998899999888863211 11 1235678999884
No 408
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.98 E-value=5.8e-06 Score=88.63 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=54.5
Q ss_pred eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++.++.. .+++++++.+..|+.++++|+||+||||+++.|.|+++|.+|+..+++..|
T Consensus 188 ~d~~~v~Gq~---------------~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQE---------------QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECcH---------------HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 4777777542 589999999999999999999999999999999999999999999987665
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.96 E-value=6.4e-06 Score=78.47 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=32.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
.+.+|+++++++|++++|.||||+||||++++++
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999999999999999999998
No 410
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.95 E-value=9.1e-06 Score=85.61 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=46.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
++++++ +.+.+||+++|+|+||+||||++++++|...++.|.+...|..
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 699999 9999999999999999999999999999999999998888854
No 411
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.95 E-value=1.1e-05 Score=84.63 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=55.0
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccH-------HHhhccEEEEccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM-------TNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~-------~~~r~~iG~cpQ~~ 505 (510)
+++|++ +.+.+||+++|+|+||+||||++++|++..+++.|.+...|...+...+. +..++.+-+|.|.|
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd 202 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSD 202 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCC
Confidence 599999 99999999999999999999999999999999999888888654211110 11235566777655
No 412
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=9.2e-06 Score=84.87 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=46.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
..-|.+.+++..|+++ ..+++-+|++..|...||+|+||+||||||++|+.
T Consensus 78 ~~Di~~~~fdLa~G~k---------------~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK---------------ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeeecch---------------hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3458888999999754 58999999999999999999999999999999987
No 413
>PRK01889 GTPase RsgA; Reviewed
Probab=97.92 E-value=1.1e-05 Score=83.50 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=53.6
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
-++.+.-.+++|++++++|+||+||||+++.|+|...++.|++.+++...+. ...++.++++||..
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~----tt~~~~l~~l~~~~ 249 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH----TTTHRELHPLPSGG 249 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc----hhhhccEEEecCCC
Confidence 3555666678999999999999999999999999999999999998754321 12356899999864
No 414
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.91 E-value=1.5e-05 Score=83.67 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=54.9
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++.+.+++.|... .+++|++ +.+.+||..+|+|+||+||||++++|+|..+|+.|.+.+.|..-
T Consensus 130 ~~~r~~i~~~l~TG--------------iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg 194 (432)
T PRK06793 130 AFEREEITDVFETG--------------IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG 194 (432)
T ss_pred chheechhhccCCC--------------CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc
Confidence 45666777777532 2588885 99999999999999999999999999999999999998877654
No 415
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.90 E-value=7.8e-06 Score=86.06 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=37.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt 474 (510)
+|+|++ +.+.+||+++|+|+||+||||++++|+|...|+
T Consensus 157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 699999 999999999999999999999999999998776
No 416
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.88 E-value=1.1e-05 Score=85.00 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=45.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
++++++ +.+.+||.++|+|+||+||||++++|+|...|+.|.+...|.+
T Consensus 134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~ 182 (422)
T TIGR02546 134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER 182 (422)
T ss_pred eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence 599999 9999999999999999999999999999999999988876554
No 417
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.87 E-value=1.5e-05 Score=83.60 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=45.8
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.|++ .++.+.+||+++|+|+||+||||++++|+|..+|+.|.+...|..-
T Consensus 129 ~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 129 RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 4776 6999999999999999999999999999999999999998888754
No 418
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.87 E-value=4.5e-06 Score=88.78 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=36.8
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~ 477 (510)
++++.+..+.+|++++|+||||+|||||+..|++.+....|.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 566677777889999999999999999999999998877764
No 419
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.86 E-value=1.4e-05 Score=84.50 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=44.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
+++|++ +.+.+||.++|+|+||+||||++++|+|..+++.|.+...|..
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 699999 9999999999999999999999999999999998877766654
No 420
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.85 E-value=1.3e-05 Score=82.59 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=32.3
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i 478 (510)
.++|+++||||+||-||||.+++|+|.+.|.-|+-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~ 131 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY 131 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC
Confidence 47899999999999999999999999999987763
No 421
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.84 E-value=1.8e-05 Score=59.99 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=30.3
Q ss_pred eeeeeEEEeC-CcEEEEecCCCCchhHHHHHHcCCccCCc
Q 010435 437 IKGLWVNIAK-DQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (510)
Q Consensus 437 v~~lsl~v~~-gei~~llG~nGaGKsTl~~~l~G~~~pt~ 475 (510)
.++-++++.+ |.++.|.|+|||||||++..+.=.+-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4445667764 56999999999999999998877665543
No 422
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.84 E-value=1.1e-05 Score=85.01 Aligned_cols=47 Identities=17% Similarity=0.368 Sum_probs=40.7
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc-ceEEEcC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYG 482 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~-G~i~i~g 482 (510)
+|+|++ +.+.+||.++|+|+||+||||++++|+|..+++. |.+...|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 699998 9999999999999999999999999999985544 5565534
No 423
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.83 E-value=1.2e-05 Score=76.50 Aligned_cols=39 Identities=33% Similarity=0.577 Sum_probs=34.3
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCcc------------CCcceEEEcCeec
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFSI 485 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~------------pt~G~i~i~g~~i 485 (510)
++|++++|+|++||||||+++.|.+.++ |..|+ ++|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~ 53 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDY 53 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCee
Confidence 5899999999999999999999999985 77788 577665
No 424
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.82 E-value=8.1e-06 Score=77.93 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=27.3
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
++|+++||.|+|||||||+++.|+|++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57899999999999999999999999876
No 425
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.82 E-value=2.1e-05 Score=74.73 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.2
Q ss_pred eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
+-..++++.+|++++|+|||||||||++++|.+
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 445566666899999999999999999999993
No 426
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.81 E-value=1.1e-05 Score=80.79 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=32.7
Q ss_pred cEEEEecCCCCchhHHHHHHcCCcc--CCcceEEEcCee
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYGFS 484 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~--pt~G~i~i~g~~ 484 (510)
.++||.|+|||||||++++|.+++. |++|++.+-+.|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 5999999999999999999999998 788998775544
No 427
>PRK05922 type III secretion system ATPase; Validated
Probab=97.81 E-value=2.5e-05 Score=82.00 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=44.4
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
+++|.+ +.+.+||.++|.|+||+||||++++|+|..+++.|.+...|..
T Consensus 146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer 194 (434)
T PRK05922 146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER 194 (434)
T ss_pred eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence 588887 9999999999999999999999999999999999988766653
No 428
>PLN02796 D-glycerate 3-kinase
Probab=97.78 E-value=8.1e-06 Score=82.94 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=42.8
Q ss_pred eeeeeeEEE---eCCcE-----EEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecC
Q 010435 436 AIKGLWVNI---AKDQL-----FCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIR 486 (510)
Q Consensus 436 av~~lsl~v---~~gei-----~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~ 486 (510)
+++++++.+ ++|+. +||.|++||||||+++.|.+++.+. .|.+.++|..+.
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 666777766 55665 9999999999999999999999875 588999998874
No 429
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.77 E-value=2.9e-05 Score=81.36 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=44.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
.+++.+ +.+.+||+++|+|+||+||||++++|+|...|+.+.+...|..
T Consensus 126 ~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 126 RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 589999 9999999999999999999999999999999988776655554
No 430
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.77 E-value=1.5e-05 Score=80.13 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=47.6
Q ss_pred eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE---cCeecCCcccHHHhhc-cEEEEccCCCc
Q 010435 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQK-SIGVCPQVTLF 507 (510)
Q Consensus 437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i---~g~~i~~~~~~~~~r~-~iG~cpQ~~~L 507 (510)
++.+...++ +++++++|+||+|||||+|.|.|...++.|++.. .|.... ++...++. ..|++.+.+.+
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT--~~~~~~~~~~~~~liDtPG~ 223 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTT--THRELFPLPGGGLLIDTPGF 223 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCccc--ceEEEEEcCCCCEEEECCCC
Confidence 344444444 5899999999999999999999999999999876 344332 12222222 26778777665
No 431
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.74 E-value=2.6e-05 Score=75.26 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=39.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC-CccCCcceEE
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGDAL 479 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G-~~~pt~G~i~ 479 (510)
.+.+|+++++.+|++++|.||||+||||+++++++ .+.+..|...
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v 64 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV 64 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 47899999999999999999999999999999999 6666667543
No 432
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.73 E-value=2.5e-05 Score=82.08 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=46.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
.+++++ +.+.+||+++|+|+||+||||++++|++...++.+.+...|..-+
T Consensus 146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr 196 (434)
T PRK08472 146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR 196 (434)
T ss_pred HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence 589999 999999999999999999999999999999888898888887653
No 433
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.70 E-value=2.4e-05 Score=74.20 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=43.3
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++|+++++.|.+||||||+.+.|.+.+.+. .|.+.++|.+++. .....+||.+|..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~-----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH-----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh-----hhhhcCCcCcccH
Confidence 467899999999999999999999977654 4689999977632 2233577777753
No 434
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.67 E-value=2.9e-05 Score=72.56 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=42.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC--------CccCCcceEEEcCeec
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--------ITPVTGGDALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G--------~~~pt~G~i~i~g~~i 485 (510)
.+++++++..+++++ +++|++|+||||+++.+++ ...|+.+++.++|.++
T Consensus 8 ~~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~ 65 (190)
T cd00879 8 NVLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF 65 (190)
T ss_pred HHHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence 378889999888888 9999999999999999998 4566678888887653
No 435
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.66 E-value=2.5e-05 Score=79.32 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=39.6
Q ss_pred eeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (510)
Q Consensus 440 lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~ 481 (510)
+++.++.|+.+++.|++||||||+++.|+|++++..|.+.|.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 678899999999999999999999999999999999988885
No 436
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.66 E-value=0.0001 Score=76.23 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=49.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceee-----------eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK-----------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~-----------~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
...+.+++|+..|++.+ .+|+ |+.+.+.+||..+|+|+.|+||||+++.|...+.
T Consensus 128 ~~ri~Fe~LTf~YP~er--------------~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 128 KNRVLFENLTPLYPNER--------------LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCeEEEEeeecCCCcc--------------ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34699999999997642 3564 9999999999999999999999999999999876
Q ss_pred CC
Q 010435 473 VT 474 (510)
Q Consensus 473 pt 474 (510)
..
T Consensus 194 ~n 195 (415)
T TIGR00767 194 RN 195 (415)
T ss_pred cc
Confidence 54
No 437
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=2.2e-05 Score=87.35 Aligned_cols=49 Identities=24% Similarity=0.353 Sum_probs=41.1
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc--eEEEcCee
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFS 484 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G--~i~i~g~~ 484 (510)
++++.++.+++|++++++||||+|||||+..|++.+....| +|.+-..|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 56777777888999999999999999999999999877776 56665544
No 438
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.65 E-value=4.4e-05 Score=80.00 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=36.4
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt 474 (510)
.|+|.+ +.+.+||..+|+|+||+||||++++|+|...++
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 588888 999999999999999999999999999988774
No 439
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.64 E-value=8.3e-05 Score=69.07 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.6
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i 480 (510)
|++++|+|+|||||||+++.|++.+.+. |.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence 6789999999999999999999987654 54444
No 440
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.64 E-value=4.3e-05 Score=72.57 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=40.2
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|+|++||||||+++.+.+.+++..| +.+-..|... ..-.++.+..|++||.+++
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYT-QEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCC-hhHHHHHHHcCCCCcCcee
Confidence 5789999999999999999999888655 4444455532 2223344566887887653
No 441
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.61 E-value=4.1e-05 Score=79.12 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=42.9
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCC--c-ceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT--G-GDALIYGFSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt--~-G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
++|..+.+.||||||||||++.|.+.+.++ . +.+.....++ ....+..++..+.|+|..+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi--E~~~~~~~~~~~~v~Q~~v 194 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI--EFVYDEIETISASVCQSEI 194 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc--eEeccccccccceeeeeec
Confidence 578999999999999999999999988543 3 3555544444 2333444555688888643
No 442
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=4.8e-05 Score=79.62 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=66.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
.+.+++..+.+.|..+. . ....++++++.-....+.+|+||+||||+++++.|...|++|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p~~------------y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE------------Y-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCCcc------------h-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-
Confidence 56799999999996542 1 578899999999999999999999999999999999999999998864
Q ss_pred ecCCcccHHHhhccEEEEccCCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
|+++||-.||.+
T Consensus 426 -----------r~ri~~f~Qhhv 437 (582)
T KOG0062|consen 426 -----------RLRIKYFAQHHV 437 (582)
T ss_pred -----------cceecchhHhhh
Confidence 556788777653
No 443
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.56 E-value=8.9e-05 Score=73.29 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=31.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l 467 (510)
+.|+|++++++.|+.+++.|++|||||||++.+
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 689999999999999999999999999999855
No 444
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.56 E-value=7.9e-05 Score=89.10 Aligned_cols=48 Identities=19% Similarity=0.084 Sum_probs=41.9
Q ss_pred eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
+.+-.|++.+| +++|+|+|||||||++++|++++.|+.|.+.+++.+.
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~~ 65 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCccc
Confidence 45557888775 9999999999999999999999999999999987653
No 445
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.55 E-value=3.6e-05 Score=74.22 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=30.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCccC--CcceEEE---cCee
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPV--TGGDALI---YGFS 484 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i---~g~~ 484 (510)
++||.|+|||||||+++.|.+.+.+ .+|++.+ +|+-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 5799999999999999999999975 5566665 6653
No 446
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.54 E-value=9.7e-05 Score=88.93 Aligned_cols=54 Identities=37% Similarity=0.575 Sum_probs=41.9
Q ss_pred CcEEEEecCCCCchhHHHHHH----cCCccCC-cceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435 447 DQLFCLLGPNGAGKTTTISCL----TGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l----~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
..+++|+|||||||||++.+| +|..+|+ +|.+++.|.++.. ....+..+.+.++
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~---~~~~~a~V~l~F~ 86 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQ---ETDVRAQIRLQFR 86 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCc---cHhhhheeEEEEE
Confidence 359999999999999999999 6999996 7999998876632 1244555666653
No 447
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=4.1e-05 Score=80.33 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=32.9
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCc----cC-CcceEEEcCeec
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGIT----PV-TGGDALIYGFSI 485 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~----~p-t~G~i~i~g~~i 485 (510)
+.+|++++|+|+||+|||||++.|+|.. .+ .-|-+..+++.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri 234 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI 234 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence 4689999999999999999999999853 22 335566666655
No 448
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.51 E-value=6.9e-05 Score=72.10 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.4
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
.+.+|++++..+ ++++|.||||+||||+++++++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 488999999987 9999999999999999999965
No 449
>PRK06820 type III secretion system ATPase; Validated
Probab=97.51 E-value=0.00012 Score=77.16 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=41.4
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
+|+|.+ +.+.+||..+|+|+||+|||||+++|++...|+.+-+-.-|
T Consensus 152 ~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iG 198 (440)
T PRK06820 152 RAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIG 198 (440)
T ss_pred ceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEc
Confidence 699999 99999999999999999999999999999988875443333
No 450
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.49 E-value=0.00011 Score=77.33 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=37.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~ 475 (510)
++++++ +.+.+||.++|+|+||+||||++++|++...++-
T Consensus 151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 589999 9999999999999999999999999999998864
No 451
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.48 E-value=6.3e-05 Score=73.86 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=30.3
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
.+++|+|||||||||++.+|++...+..|+....+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~ 57 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKN 57 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccc
Confidence 48999999999999999999999988777775543
No 452
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.45 E-value=0.00015 Score=66.42 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=32.2
Q ss_pred EEEEecCCCCchhHHHHHHcCC----ccCCcc----eEEEcCeec
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI----TPVTGG----DALIYGFSI 485 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~----~~pt~G----~i~i~g~~i 485 (510)
.++++|++||||||+++.++|. ..||.| .+..+|.++
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL 60 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence 4789999999999999999997 668889 788877654
No 453
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=97.42 E-value=0.059 Score=52.18 Aligned_cols=144 Identities=13% Similarity=0.113 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHH
Q 010435 129 GFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELN 208 (510)
Q Consensus 129 ~~~~~~~~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s 208 (510)
+.......+++|||++.-+.++.+.++...|-++..+...+..++.+.+..+.+.+++.+. ..+....++..+++...
T Consensus 51 ~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~ 128 (232)
T TIGR00025 51 AFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVIGFVLGFRF--AGGALTALTLGAVIIAL 128 (232)
T ss_pred HHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CCchHHHHHHHHHHHHH
Confidence 3334445689999999999999999999999999987776666555444444444444332 12233333333344444
Q ss_pred HHHHHHHHHHhcCchhHH---HHHHHHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHHH
Q 010435 209 MTGFAFMFSAFISKSSSS---TTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS 278 (510)
Q Consensus 209 ~i~~s~~~S~fF~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~ 278 (510)
...++.+++.+....+.+ .....++.+ ...++.-..+|. +..+...+.+..+.|......++....
T Consensus 129 ~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~---p~~~lSG~~~P~-~~mP~~lq~i~~~~P~t~~~~~~r~~~ 197 (232)
T TIGR00025 129 GTALFAALGLVAGGTLQAEIVLAVANLVWF---IFALLSAGLVPL-NLIPTWIKWFVRVQPSSYATEALRQAA 197 (232)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHH---HHHHHhheeeec-ccccHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455666677776544333 222111111 000111111222 234566788888999888877776654
No 454
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.41 E-value=0.00017 Score=69.70 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=31.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l 467 (510)
.+.+|++++..++++++|.||||+||||+++++
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i 50 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQI 50 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHH
Confidence 479999999999999999999999999999985
No 455
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.41 E-value=8.9e-05 Score=79.84 Aligned_cols=52 Identities=35% Similarity=0.428 Sum_probs=48.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
.+++++++.+..|+.+.|+|+||+||||+++.|.|+++|.+|++.+++..+.
T Consensus 199 ~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~ 250 (499)
T TIGR00368 199 HAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW 250 (499)
T ss_pred HHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence 5889999999999999999999999999999999999999999999877663
No 456
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.37 E-value=0.00016 Score=87.31 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=36.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~ 481 (510)
+.++|++|++++||+++|.|+||||||||+..+ +++ .|++.+.
T Consensus 949 ~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~ 991 (1809)
T PRK00635 949 HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYA 991 (1809)
T ss_pred ccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeee
Confidence 469999999999999999999999999977766 443 8888764
No 457
>PRK00098 GTPase RsgA; Reviewed
Probab=97.37 E-value=0.00016 Score=72.98 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=33.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i 480 (510)
+|++++++|+||+|||||+|.|.|...+..|++..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 58999999999999999999999999999999987
No 458
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.34 E-value=0.078 Score=51.35 Aligned_cols=137 Identities=9% Similarity=0.148 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHH
Q 010435 134 ISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFA 213 (510)
Q Consensus 134 ~~~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s 213 (510)
...++.|||++.-+-+.....+...|+++..+...+..++..+++.++...+. . .........+++.++++++...++
T Consensus 67 ~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~lg 144 (236)
T TIGR01247 67 GISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVA-I-LKPSGVIPTLVLAFIVGVALSGLG 144 (236)
T ss_pred hhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34567899988777777889999999999999988887776554444333221 1 111233344445566788889999
Q ss_pred HHHHHhcCchhHHHHHH-HHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHH
Q 010435 214 FMFSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL 277 (510)
Q Consensus 214 ~~~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i 277 (510)
++++.++++.+.+..+. .+.....++... .+|. +..+..++.+..+.|......++...
T Consensus 145 ~~l~~~~~~~~~~~~i~~~~~~~l~~lsG~----~~P~-~~~P~~~~~i~~~~P~~~~~~~~r~~ 204 (236)
T TIGR01247 145 VAIAARMDSMEGFQIIMSMLMLPMFFLSGA----FYPI-TTMPAWMQGLAKINPLTYAVDGARYY 204 (236)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHh----hcCH-HhCHHHHHHHHHHCcHHHHHHHHHHH
Confidence 99999888876544332 221111111111 0221 12344567777788877666666543
No 459
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.33 E-value=0.00019 Score=68.12 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=29.0
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++++++.+| +.+|+|+|||||||++..|...
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~ 44 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIG 44 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHH
Confidence 567788888776 8899999999999999998743
No 460
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.32 E-value=0.00016 Score=83.10 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=29.7
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHH
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~ 465 (510)
..++++|++|++||+++|.|+||||||||++
T Consensus 621 ~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 621 NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 3699999999999999999999999999998
No 461
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.31 E-value=0.0002 Score=82.47 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=31.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l 467 (510)
..++++|++|++||++||.|+||||||||++.+
T Consensus 623 ~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 623 NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 369999999999999999999999999999876
No 462
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.29 E-value=0.00013 Score=68.93 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=26.7
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
++||.|++||||||+.+.|.+++ ..|.+.+-+.|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 47999999999999999999988 34555444433
No 463
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.27 E-value=0.00023 Score=85.89 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=34.8
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHH---------HHcCCccC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS---------CLTGITPV 473 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~---------~l~G~~~p 473 (510)
..++++|+++++||++||.|+||||||||++ .|.|..++
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~ 656 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCS 656 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3799999999999999999999999999999 77776443
No 464
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.25 E-value=0.00023 Score=63.48 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=28.8
Q ss_pred EEEecCCCCchhHHHHHHcCC--------------ccCCcceEEEcCeecC
Q 010435 450 FCLLGPNGAGKTTTISCLTGI--------------TPVTGGDALIYGFSIR 486 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~--------------~~pt~G~i~i~g~~i~ 486 (510)
++|+|++||||||+++.|+|. ..++.|.+.+...|+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 52 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLG 52 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECC
Confidence 579999999999999999998 3344455666666663
No 465
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.23 E-value=0.00025 Score=73.61 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=35.1
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIR 486 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~ 486 (510)
=++||.|++||||||+.+.|.+++.++ .|.+.++|..+.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt 254 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT 254 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence 378999999999999999999999877 689999998874
No 466
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.21 E-value=0.00024 Score=65.88 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=24.1
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
|++++|+|||||||||+++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 467
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.00016 Score=74.76 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=35.0
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt 474 (510)
.++++.++.+.+|++++|+||||+|||||+..|++.....
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4677888889999999999999999999999999875433
No 468
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.18 E-value=0.00026 Score=70.57 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=28.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i 480 (510)
++||.|+|||||||+.++|++++++..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 47999999999999999999999988775444
No 469
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.17 E-value=0.00051 Score=65.75 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=31.9
Q ss_pred EEEEecCCCCchhHHH-HHHcCCccC-----------------CcceEEEcCeecC
Q 010435 449 LFCLLGPNGAGKTTTI-SCLTGITPV-----------------TGGDALIYGFSIR 486 (510)
Q Consensus 449 i~~llG~nGaGKsTl~-~~l~G~~~p-----------------t~G~i~i~g~~i~ 486 (510)
.++++|+||+||||++ +.++|..++ +.|.+.+++.|+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~ 66 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTA 66 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECC
Confidence 3689999999999999 689998765 4678888888874
No 470
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.17 E-value=0.00028 Score=66.75 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.6
Q ss_pred EEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
++++|++|+||||+++.|+|...+++|.+..+.
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~ 36 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGV 36 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccccCc
Confidence 689999999999999999998888777766653
No 471
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.16 E-value=0.00038 Score=69.37 Aligned_cols=41 Identities=24% Similarity=0.158 Sum_probs=35.5
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
-+.+.+++|+|++|||||||++.+.+.+....+.+.|.|.-
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~ 141 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ 141 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence 34578999999999999999999999988888888888753
No 472
>PLN02165 adenylate isopentenyltransferase
Probab=97.15 E-value=0.00034 Score=70.98 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=35.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCcc---CCcceE-EEcCeecCC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDA-LIYGFSIRS 487 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~---pt~G~i-~i~g~~i~~ 487 (510)
+|++++|+|||||||||+...|++.+. .+.+++ .+.|.||.+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgT 87 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITT 87 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCccccc
Confidence 467999999999999999999999976 567777 448899854
No 473
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.12 E-value=0.0004 Score=63.31 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=24.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i 480 (510)
++++.+|+|++|+|||||+|.|.+......|+|.-
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~ 68 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISE 68 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S----
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc
Confidence 45899999999999999999999986655566543
No 474
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.10 E-value=0.00035 Score=65.41 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=27.7
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
..+++++++.+| +++|.|+||+||||++..|.-.+
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 467888888775 99999999999999999876544
No 475
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.09 E-value=0.0003 Score=68.39 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=36.0
Q ss_pred EeCCcEEEEecCCCCchhHH-HHHHcCCccCCcceEEEcCee
Q 010435 444 IAKDQLFCLLGPNGAGKTTT-ISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl-~~~l~G~~~pt~G~i~i~g~~ 484 (510)
+++|+++.+.|+||+||||+ ++++.+..++....+++....
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 68899999999999999999 799999888877888887543
No 476
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.08 E-value=0.00055 Score=65.90 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=33.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
.+-+|++|+.++|++++|.||||+||||+++++++.
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 478999999999999999999999999999998765
No 477
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=97.04 E-value=0.23 Score=48.86 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=87.9
Q ss_pred HHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHH
Q 010435 136 SLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM 215 (510)
Q Consensus 136 ~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~~ 215 (510)
.+.+|||+|.-+.+..+-++...+-++..+...+..++..+++.++...++.. ...+...++.++++++++...++++
T Consensus 81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~--~~~~~l~~~~~~ll~~l~~~~lg~~ 158 (253)
T TIGR01291 81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYI--EWWSLIYILPVIALTGLAFASLSML 158 (253)
T ss_pred HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999988777766655444433333321 2233444455667788888899999
Q ss_pred HHHhcCchhHHHHHH-HHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHHH
Q 010435 216 FSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS 278 (510)
Q Consensus 216 ~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~ 278 (510)
+|...++.+.+..+. ++....-++...+ +|. +..+..++.+..+.|......++....
T Consensus 159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~~----~P~-~~mP~~lq~i~~~nPlt~~v~~~R~~~ 217 (253)
T TIGR01291 159 VAALAPSYAYFAFYQSLVITPMLFLSGVV----FPV-FQLNDVIQGMTHFLPLAHSIDDIRPVM 217 (253)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHh----cCH-HhChHHHHHHHHHCcHHHHHHHHHHHH
Confidence 999887776554332 2221111111111 121 123455677778899888888877664
No 478
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.02 E-value=0.00033 Score=67.44 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=39.5
Q ss_pred EEEEecCCCCchhHHHHHHc---CCccCCcceEE--------EcCeecCCcccHHHhhccEEEEcc
Q 010435 449 LFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~--------i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
+++|.||+||||||+.+.|+ |+..+++|.++ .+|.+..+.....+.++..|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFI 69 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEe
Confidence 68999999999999999999 66668899875 445555332334445566666554
No 479
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.00 E-value=0.00063 Score=73.56 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=32.7
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
-++||.|+|||||||+.+.|.|.+ |..|.|..+|+.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~ 101 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN 101 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence 489999999999999999999997 578999999975
No 480
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.99 E-value=0.00044 Score=63.98 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=34.5
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEE-EcCeec
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-IYGFSI 485 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~-i~g~~i 485 (510)
++|+++++.|.+|+||||+.+.|.+.+.+..+++. +++.++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 57999999999999999999999999987666665 676443
No 481
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.99 E-value=0.00028 Score=71.37 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=42.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
.++++++....++++++++|++||||||+++.+.+.......++.+-+.|
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 58999999999999999999999999999999999876655566554443
No 482
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.95 E-value=0.00036 Score=65.05 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=30.6
Q ss_pred CcEEEEecCCCCchhHHHHHHc---CCccCCcceEEEc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALIY 481 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~i~ 481 (510)
..+++++|++||||||+.+.|+ |+..++.|++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~ 40 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRA 40 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 4689999999999999999999 9998988876543
No 483
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.95 E-value=0.00035 Score=69.30 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=37.0
Q ss_pred eeeeeeEEEe-------CCcEEEEecCCCCchhHHHHHHcCCccC---CcceEEEcCee
Q 010435 436 AIKGLWVNIA-------KDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFS 484 (510)
Q Consensus 436 av~~lsl~v~-------~gei~~llG~nGaGKsTl~~~l~G~~~p---t~G~i~i~g~~ 484 (510)
+++++++.+. +|+.++++|+||+||||++++|++.+.. ..|-+..+++.
T Consensus 57 v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 57 ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4666666665 5599999999999999999999998643 34555555543
No 484
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.93 E-value=0.0005 Score=61.87 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.6
Q ss_pred EEEecCCCCchhHHHHHHc--CCccCCcce
Q 010435 450 FCLLGPNGAGKTTTISCLT--GITPVTGGD 477 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~--G~~~pt~G~ 477 (510)
++++|++|||||||++.|+ +..++.+|+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~ 31 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKT 31 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCC
Confidence 5799999999999999999 777777766
No 485
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=96.92 E-value=0.0011 Score=68.24 Aligned_cols=42 Identities=31% Similarity=0.494 Sum_probs=38.5
Q ss_pred ceeeeeeEEEeCC-----cEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435 435 HAIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (510)
Q Consensus 435 ~av~~lsl~v~~g-----ei~~llG~nGaGKsTl~~~l~G~~~pt~G 476 (510)
.-+.+..|.|+.| |++..||.||-||||+++|++|.++|+.|
T Consensus 350 k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~ 396 (592)
T KOG0063|consen 350 KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG 396 (592)
T ss_pred eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence 4688888999988 68999999999999999999999999987
No 486
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.90 E-value=0.00064 Score=64.87 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=25.5
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.++.+++|.|++||||||+.+.|.+.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999883
No 487
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.90 E-value=0.0009 Score=63.62 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=25.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCc-cCCcceEE
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT-PVTGGDAL 479 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~-~pt~G~i~ 479 (510)
.+|++||+|+|||||+++|+|.. ....+++.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~ 33 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELE 33 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEE
Confidence 47999999999999999999984 34445544
No 488
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.87 E-value=0.001 Score=71.52 Aligned_cols=45 Identities=22% Similarity=0.456 Sum_probs=40.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc---CCccCCcceEEE
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALI 480 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~i 480 (510)
+.+||+.+.. +|.+++|.|++||||||+.+.|+ |....+.|..|-
T Consensus 273 RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR 320 (512)
T PRK13477 273 RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR 320 (512)
T ss_pred EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence 6899999987 88999999999999999999999 777777887764
No 489
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.87 E-value=0.001 Score=70.17 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=35.8
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~ 475 (510)
.+=|.-+.+.+||.++|+|+||+||||++++|++...|+.
T Consensus 147 r~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~ 186 (442)
T PRK08927 147 RALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV 186 (442)
T ss_pred EEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence 3446678999999999999999999999999999998864
No 490
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.84 E-value=0.0012 Score=64.93 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=35.3
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i 478 (510)
|+|.+ +.+.+||..+|+|++|+||||+++.+.+......+++
T Consensus 6 ~id~~-~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv 47 (249)
T cd01128 6 VVDLF-APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEV 47 (249)
T ss_pred heeee-cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCe
Confidence 55544 5889999999999999999999999999988764433
No 491
>PTZ00035 Rad51 protein; Provisional
Probab=96.83 E-value=0.00057 Score=70.15 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=35.9
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCcc-C-----CcceE-EEcCeec
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP-V-----TGGDA-LIYGFSI 485 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~-p-----t~G~i-~i~g~~i 485 (510)
.+++|+++.|.|++|+||||+...++.... | ..|.+ +|++...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~ 163 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT 163 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence 699999999999999999999998886554 3 45766 8888764
No 492
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.77 E-value=0.0019 Score=55.84 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=33.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCc-ceEEEcCeec
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFSI 485 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~-G~i~i~g~~i 485 (510)
+++.+.|.||+|+||||+++.|++...... +-++++....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 367899999999999999999999988765 6777776543
No 493
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.77 E-value=0.00062 Score=77.20 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=32.4
Q ss_pred eeeEEEeCC-cEEEEecCCCCchhHHHHHHcCC-ccCCcc
Q 010435 439 GLWVNIAKD-QLFCLLGPNGAGKTTTISCLTGI-TPVTGG 476 (510)
Q Consensus 439 ~lsl~v~~g-ei~~llG~nGaGKsTl~~~l~G~-~~pt~G 476 (510)
.+|+.+.++ ++++|.||||+||||++++++|. +.+..|
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G 352 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG 352 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence 578888877 99999999999999999999998 444454
No 494
>PRK07429 phosphoribulokinase; Provisional
Probab=96.75 E-value=0.0013 Score=67.30 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=37.3
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCCcceE-EEcCeecCCcccHHHhhccEEEEccC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i-~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
++||.|++||||||+.+.|++++.++.+.+ ..++. .. .+ .+.|+..|+.+++
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~--~~-~~-~~~r~~~g~~~l~ 62 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY--HS-YD-RKQRKELGITALD 62 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc--cc-CC-HHHHHhcCCcccC
Confidence 889999999999999999999999887654 33333 11 12 2335667776654
No 495
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=96.75 E-value=0.14 Score=46.34 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=78.9
Q ss_pred HHHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHH
Q 010435 135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAF 214 (510)
Q Consensus 135 ~~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~~~s~i~~s~ 214 (510)
..++.|||++.-+.++.+-++.+.+.++..+.+.+..++.+.++++++..++.+.- .++...+..+.+..+..++++.
T Consensus 10 ~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~g~~~~--~~~~~~~~~~~~~~l~~~~f~~ 87 (152)
T TIGR01248 10 IDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIALALGFRFR--NGVAAALLFLLIPSIFGIAFAA 87 (152)
T ss_pred HHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999998888887766666655554432 2333233333333333334444
Q ss_pred HHHHh--cCchhHHHHHH-HHHHHHHHHHHHHHhhcCccCcccchhhhhhheecChHHHHHHHHHH
Q 010435 215 MFSAF--ISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL 277 (510)
Q Consensus 215 ~~S~f--F~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i 277 (510)
+.+.+ ..+...+.... .+.+...++.. ..+|. +..+..++.+..+.|-.....++..+
T Consensus 88 l~~~~a~~~~~~~~~~~~~~v~~pl~flsg----~~~P~-~~mP~wlq~ia~~~Plt~~~~~~R~~ 148 (152)
T TIGR01248 88 LVMAMALRKEGRFAMEALELAQAAAAFLNP----GATPI-KLFPDWAQPLIAHQPISPAIEACADL 148 (152)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhh----hhcCH-HhCcHHHHHHHhhCCccHHHHHHHHH
Confidence 33332 23333332221 11111111111 11221 23455667777788877777666554
No 496
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.74 E-value=0.0011 Score=63.59 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=25.6
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
+=+|++++=..+.+..|.||||+||||+++.+.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence 345555543223789999999999999999987
No 497
>PRK15494 era GTPase Era; Provisional
Probab=96.71 E-value=0.0012 Score=67.97 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=43.8
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCc-------EEEEecCCCCchhHHHHHHcCCc
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQ-------LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~ge-------i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++.++++.+|+... .+++.++++++.|+ .++++|..|+|||||++.|.|--
T Consensus 18 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 18 DTEALAAAVREDAST--------------GSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred ccccccccccCCCCc--------------ccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456677777887431 48999999999999 99999999999999999998864
No 498
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.70 E-value=0.0015 Score=67.14 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=36.4
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
..++.+..+.+.|++||||||+++.|.+.++++.+-+.|..
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 34677888999999999999999999999999888888764
No 499
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.65 E-value=0.09 Score=51.40 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhHHHHhHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccccccCCh---HHHHHHHHHHH
Q 010435 133 QISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG---MMFQFDFFLNNSF---AVLFLLFFLFE 206 (510)
Q Consensus 133 ~~~~iV~EKe~~lke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~---~~~~~~~f~~~~~---~~l~ll~~l~~ 206 (510)
.+..+++|||+|.-|.+....++.+.+.++-++...+..++..+..++.. ..+.... .+.+. ....+..++++
T Consensus 69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 147 (240)
T TIGR03518 69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPV-GNLDIGSTFGSYIGLLLLG 147 (240)
T ss_pred HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccccHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999987766554432111111 1121111 11122 22344456788
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010435 207 LNMTGFAFMFSAFISKSSSSTTIGFSV 233 (510)
Q Consensus 207 ~s~i~~s~~~S~fF~~~~~a~~~~~~~ 233 (510)
.+.++.+.++|++-++...|...++.+
T Consensus 148 ~~~~aig~~iSsl~~~q~~a~~~~~~~ 174 (240)
T TIGR03518 148 SVYTAIGLFASSLTENQIVAFIIAVFL 174 (240)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 889999999999866666565444433
No 500
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.58 E-value=0.0017 Score=61.49 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=29.5
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeec
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSI 485 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i 485 (510)
++.+.||+||||||+++.|.+..++. .|.+..-+.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 57899999999999999988888754 57776655554
Done!