Query 010435
Match_columns 510
No_of_seqs 285 out of 2982
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 99.8 1.7E-19 5.8E-24 184.0 11.0 93 404-507 22-116 (366)
2 3gfo_A Cobalt import ATP-bindi 99.8 2.7E-19 9.3E-24 176.7 11.4 87 405-505 6-93 (275)
3 1ji0_A ABC transporter; ATP bi 99.8 4.4E-19 1.5E-23 172.0 12.1 88 405-507 5-92 (240)
4 1g6h_A High-affinity branched- 99.8 3E-19 1E-23 175.0 10.6 88 405-507 6-93 (257)
5 1vpl_A ABC transporter, ATP-bi 99.8 4.4E-19 1.5E-23 173.6 11.3 87 404-507 13-99 (256)
6 2olj_A Amino acid ABC transpor 99.8 4.3E-19 1.5E-23 174.2 11.1 87 406-507 24-111 (263)
7 4g1u_C Hemin import ATP-bindin 99.8 9.2E-19 3.1E-23 172.3 12.1 87 405-507 10-96 (266)
8 2ff7_A Alpha-hemolysin translo 99.8 9.4E-19 3.2E-23 170.4 11.7 89 405-507 6-94 (247)
9 3nh6_A ATP-binding cassette SU 99.8 1.1E-18 3.7E-23 174.7 12.4 88 405-507 52-139 (306)
10 2pcj_A ABC transporter, lipopr 99.8 8.9E-19 3.1E-23 168.1 11.2 87 406-507 4-93 (224)
11 3tif_A Uncharacterized ABC tra 99.8 7.2E-19 2.5E-23 170.0 10.3 90 407-507 2-94 (235)
12 1b0u_A Histidine permease; ABC 99.8 8.1E-19 2.8E-23 172.4 10.5 87 406-507 6-104 (262)
13 2ixe_A Antigen peptide transpo 99.8 2E-18 6.7E-23 170.4 11.7 90 405-507 15-104 (271)
14 3fvq_A Fe(3+) IONS import ATP- 99.8 8.5E-19 2.9E-23 178.7 9.0 87 406-507 4-91 (359)
15 2ihy_A ABC transporter, ATP-bi 99.8 1.9E-18 6.5E-23 171.1 10.7 85 405-505 20-106 (279)
16 3rlf_A Maltose/maltodextrin im 99.8 1.4E-18 4.9E-23 178.2 10.0 84 406-507 3-86 (381)
17 1mv5_A LMRA, multidrug resista 99.7 1.2E-18 4.2E-23 169.2 8.7 86 407-507 2-87 (243)
18 1sgw_A Putative ABC transporte 99.7 4.5E-18 1.5E-22 161.9 10.8 82 404-507 8-89 (214)
19 1z47_A CYSA, putative ABC-tran 99.7 3E-18 1E-22 174.6 10.0 86 404-507 12-98 (355)
20 2yyz_A Sugar ABC transporter, 99.7 3.1E-18 1.1E-22 174.9 10.1 84 406-507 3-86 (359)
21 2it1_A 362AA long hypothetical 99.7 4.8E-18 1.7E-22 173.7 10.5 84 406-507 3-86 (362)
22 2yz2_A Putative ABC transporte 99.7 7E-18 2.4E-22 166.1 10.8 86 406-505 2-87 (266)
23 2zu0_C Probable ATP-dependent 99.7 5.2E-18 1.8E-22 167.0 9.4 88 405-507 19-108 (267)
24 1g29_1 MALK, maltose transport 99.7 5.9E-18 2E-22 173.9 10.1 87 406-507 3-92 (372)
25 1v43_A Sugar-binding transport 99.7 5.4E-18 1.8E-22 173.9 9.6 84 406-507 11-94 (372)
26 2d2e_A SUFC protein; ABC-ATPas 99.7 4.9E-18 1.7E-22 165.7 8.9 87 406-507 3-91 (250)
27 1oxx_K GLCV, glucose, ABC tran 99.7 3.7E-18 1.3E-22 174.3 8.2 87 406-507 3-93 (353)
28 2ghi_A Transport protein; mult 99.7 1.5E-17 5E-22 163.2 11.3 88 406-507 17-104 (260)
29 3gd7_A Fusion complex of cysti 99.7 1.4E-17 4.7E-22 171.9 11.2 89 404-507 17-105 (390)
30 3d31_A Sulfate/molybdate ABC t 99.7 8.5E-18 2.9E-22 171.1 9.4 82 407-507 2-83 (348)
31 2onk_A Molybdate/tungstate ABC 99.7 1.4E-17 4.6E-22 161.4 7.7 80 407-507 2-81 (240)
32 4a82_A Cystic fibrosis transme 99.7 4.7E-17 1.6E-21 177.3 11.2 90 404-507 337-426 (578)
33 2pze_A Cystic fibrosis transme 99.7 7.9E-17 2.7E-21 155.0 10.8 76 405-507 5-80 (229)
34 2qi9_C Vitamin B12 import ATP- 99.7 6.3E-17 2.2E-21 157.5 9.8 81 406-507 4-84 (249)
35 3qf4_A ABC transporter, ATP-bi 99.7 7.1E-17 2.4E-21 176.1 10.8 90 404-507 339-428 (587)
36 3qf4_B Uncharacterized ABC tra 99.7 2.8E-17 9.5E-22 179.7 7.5 88 405-507 353-440 (598)
37 2cbz_A Multidrug resistance-as 99.7 7.5E-17 2.6E-21 156.0 9.6 75 406-507 3-77 (237)
38 2pjz_A Hypothetical protein ST 99.7 4.4E-17 1.5E-21 159.9 7.9 84 407-507 2-86 (263)
39 3b60_A Lipid A export ATP-bind 99.7 1.4E-16 4.8E-21 173.7 12.2 89 405-507 340-428 (582)
40 2yl4_A ATP-binding cassette SU 99.7 1.5E-16 5.1E-21 173.9 11.7 90 405-507 339-429 (595)
41 3b5x_A Lipid A export ATP-bind 99.7 1.4E-16 4.8E-21 173.7 11.3 89 405-507 340-428 (582)
42 2nq2_C Hypothetical ABC transp 99.7 1.9E-16 6.6E-21 154.6 10.1 73 406-507 4-77 (253)
43 4f4c_A Multidrug resistance pr 99.6 7.4E-16 2.5E-20 182.0 12.4 91 404-507 1074-1164(1321)
44 3g5u_A MCG1178, multidrug resi 99.6 1.9E-15 6.6E-20 178.0 11.5 91 404-507 385-475 (1284)
45 4f4c_A Multidrug resistance pr 99.6 4.6E-15 1.6E-19 175.2 12.0 91 404-507 413-503 (1321)
46 2bbs_A Cystic fibrosis transme 99.6 2.3E-15 8E-20 149.6 6.8 72 405-507 39-110 (290)
47 3g5u_A MCG1178, multidrug resi 99.5 4.2E-15 1.4E-19 175.1 8.8 90 405-507 1029-1118(1284)
48 2iw3_A Elongation factor 3A; a 99.4 2.7E-13 9.4E-18 153.3 8.7 76 405-505 670-745 (986)
49 1htw_A HI0065; nucleotide-bind 99.4 2.1E-15 7.2E-20 136.6 -7.7 65 435-506 21-85 (158)
50 3bk7_A ABC transporter ATP-bin 99.3 2E-12 7E-17 140.9 8.1 73 404-506 355-427 (607)
51 1yqt_A RNAse L inhibitor; ATP- 99.3 2.7E-12 9.1E-17 138.3 8.0 73 404-506 285-357 (538)
52 3ozx_A RNAse L inhibitor; ATP 99.3 5.2E-12 1.8E-16 135.8 8.5 73 404-505 267-339 (538)
53 1z6g_A Guanylate kinase; struc 99.2 6.8E-13 2.3E-17 126.4 0.5 67 435-505 11-77 (218)
54 1yqt_A RNAse L inhibitor; ATP- 99.2 1.8E-12 6.1E-17 139.7 1.9 84 407-505 21-115 (538)
55 3bk7_A ABC transporter ATP-bin 99.2 2E-12 7E-17 140.9 2.4 84 406-504 83-184 (607)
56 2dpy_A FLII, flagellum-specifi 99.2 1.3E-12 4.6E-17 137.0 0.2 86 405-505 130-222 (438)
57 3b85_A Phosphate starvation-in 99.2 5.9E-13 2E-17 125.9 -3.8 62 435-505 14-75 (208)
58 3b9q_A Chloroplast SRP recepto 99.2 7.8E-12 2.7E-16 125.0 2.7 71 436-506 89-164 (302)
59 2obl_A ESCN; ATPase, hydrolase 99.1 7.8E-12 2.7E-16 127.3 2.2 86 405-505 44-135 (347)
60 1tf7_A KAIC; homohexamer, hexa 99.1 5.7E-12 1.9E-16 135.6 -1.1 69 435-505 26-97 (525)
61 2qm8_A GTPase/ATPase; G protei 99.1 8.9E-13 3E-17 134.0 -8.8 85 407-506 30-117 (337)
62 1tq4_A IIGP1, interferon-induc 99.1 1.3E-11 4.4E-16 128.2 -0.9 62 435-506 37-118 (413)
63 2og2_A Putative signal recogni 99.1 4.4E-11 1.5E-15 122.0 3.0 69 438-506 148-221 (359)
64 3euj_A Chromosome partition pr 99.0 5.1E-11 1.8E-15 125.7 1.9 51 435-486 18-68 (483)
65 2jeo_A Uridine-cytidine kinase 99.0 6.2E-11 2.1E-15 114.7 1.5 59 434-507 12-70 (245)
66 2yhs_A FTSY, cell division pro 99.0 9E-11 3.1E-15 123.5 2.6 70 437-506 283-357 (503)
67 2gza_A Type IV secretion syste 99.0 5.6E-11 1.9E-15 121.8 0.9 69 436-507 164-233 (361)
68 2npi_A Protein CLP1; CLP1-PCF1 99.0 2.1E-11 7.1E-16 128.6 -2.5 57 439-505 130-188 (460)
69 3ux8_A Excinuclease ABC, A sub 99.0 1.1E-10 3.9E-15 129.1 3.1 51 435-485 32-110 (670)
70 1znw_A Guanylate kinase, GMP k 99.0 8.5E-11 2.9E-15 110.7 1.4 64 435-505 10-73 (207)
71 2iw3_A Elongation factor 3A; a 99.0 6.7E-10 2.3E-14 125.7 7.9 70 405-504 434-503 (986)
72 2pt7_A CAG-ALFA; ATPase, prote 98.9 8.2E-11 2.8E-15 119.1 -0.3 65 436-503 160-224 (330)
73 1sq5_A Pantothenate kinase; P- 98.9 1.2E-11 4E-16 124.1 -6.8 76 406-504 37-136 (308)
74 3j16_B RLI1P; ribosome recycli 98.9 4E-10 1.4E-14 122.6 4.3 42 436-478 93-134 (608)
75 3sop_A Neuronal-specific septi 98.9 1.6E-10 5.4E-15 113.7 0.9 55 449-507 4-58 (270)
76 2v9p_A Replication protein E1; 98.9 2.7E-11 9.4E-16 120.8 -5.1 77 407-503 102-179 (305)
77 3j16_B RLI1P; ribosome recycli 98.9 6.2E-10 2.1E-14 121.1 5.0 57 435-505 361-422 (608)
78 4aby_A DNA repair protein RECN 98.9 5E-10 1.7E-14 116.5 4.1 71 435-507 49-158 (415)
79 3aez_A Pantothenate kinase; tr 98.9 4E-11 1.4E-15 120.3 -4.1 56 404-476 41-119 (312)
80 1rj9_A FTSY, signal recognitio 98.9 7.6E-10 2.6E-14 110.6 4.2 62 446-507 101-167 (304)
81 1qhl_A Protein (cell division 98.9 8.6E-11 2.9E-15 112.4 -3.4 63 441-504 22-91 (227)
82 1s96_A Guanylate kinase, GMP k 98.8 4.3E-10 1.5E-14 107.1 1.0 60 441-505 10-71 (219)
83 1u0l_A Probable GTPase ENGC; p 98.8 6.5E-10 2.2E-14 111.0 2.2 64 442-507 164-231 (301)
84 3tr0_A Guanylate kinase, GMP k 98.8 6.6E-10 2.3E-14 103.7 2.0 60 441-505 1-60 (205)
85 2qag_B Septin-6, protein NEDD5 98.8 2.9E-10 9.9E-15 118.0 -1.2 62 437-507 30-93 (427)
86 2eyu_A Twitching motility prot 98.8 4.3E-10 1.5E-14 110.0 -0.0 62 435-503 15-77 (261)
87 4gp7_A Metallophosphoesterase; 98.8 7.2E-10 2.4E-14 101.2 1.0 45 439-483 1-57 (171)
88 3ozx_A RNAse L inhibitor; ATP 98.8 1.8E-09 6.2E-14 116.1 3.0 44 442-485 19-74 (538)
89 3e70_C DPA, signal recognition 98.7 4.1E-09 1.4E-13 106.3 4.3 65 443-507 125-194 (328)
90 2ehv_A Hypothetical protein PH 98.7 1.6E-09 5.6E-14 104.1 1.1 60 443-504 26-87 (251)
91 3szr_A Interferon-induced GTP- 98.7 2.5E-10 8.6E-15 124.7 -5.2 86 406-507 10-108 (608)
92 2qnr_A Septin-2, protein NEDD5 98.7 3.4E-09 1.2E-13 105.8 3.4 71 410-506 2-73 (301)
93 3lnc_A Guanylate kinase, GMP k 98.7 3E-09 1E-13 101.7 2.4 37 435-471 15-52 (231)
94 1zp6_A Hypothetical protein AT 98.7 2E-09 6.7E-14 99.4 1.0 41 443-485 5-45 (191)
95 2yv5_A YJEQ protein; hydrolase 98.7 5.4E-09 1.9E-13 104.3 3.4 62 443-507 161-226 (302)
96 1t9h_A YLOQ, probable GTPase E 98.7 1.8E-09 6E-14 107.8 -0.3 65 442-508 168-235 (307)
97 2rcn_A Probable GTPase ENGC; Y 98.6 1.4E-08 4.6E-13 103.4 4.5 65 436-506 205-271 (358)
98 4a74_A DNA repair and recombin 98.6 7E-09 2.4E-13 98.3 2.0 60 443-502 21-87 (231)
99 1pui_A ENGB, probable GTP-bind 98.6 5.4E-09 1.8E-13 97.7 -0.2 57 406-480 3-64 (210)
100 2oap_1 GSPE-2, type II secreti 98.6 6.3E-09 2.1E-13 111.1 0.3 50 435-484 248-297 (511)
101 2qag_C Septin-7; cell cycle, c 98.6 1.2E-08 4.1E-13 106.1 2.4 76 405-506 10-85 (418)
102 4e22_A Cytidylate kinase; P-lo 98.6 7.9E-09 2.7E-13 100.4 0.5 61 445-505 25-96 (252)
103 1lvg_A Guanylate kinase, GMP k 98.5 7.6E-09 2.6E-13 96.7 -0.3 40 444-485 1-53 (198)
104 2ewv_A Twitching motility prot 98.5 6.8E-09 2.3E-13 106.7 -0.9 62 436-504 127-189 (372)
105 1cr0_A DNA primase/helicase; R 98.5 6.9E-09 2.3E-13 103.0 -1.6 51 435-485 23-74 (296)
106 3ux8_A Excinuclease ABC, A sub 98.5 4.4E-08 1.5E-12 108.4 4.3 51 435-486 336-408 (670)
107 1lw7_A Transcriptional regulat 98.5 2.3E-09 7.9E-14 109.9 -5.6 46 436-481 157-208 (365)
108 2f1r_A Molybdopterin-guanine d 98.5 9.1E-09 3.1E-13 94.0 -1.3 59 448-506 3-71 (171)
109 2i3b_A HCR-ntpase, human cance 98.4 2.2E-08 7.5E-13 93.0 -0.0 37 447-485 1-37 (189)
110 2o8b_B DNA mismatch repair pro 98.4 5.6E-08 1.9E-12 111.6 2.8 54 405-473 749-814 (1022)
111 1p9r_A General secretion pathw 98.4 8.1E-09 2.8E-13 107.5 -3.9 49 435-485 157-205 (418)
112 4eun_A Thermoresistant glucoki 98.4 4.9E-08 1.7E-12 91.1 1.4 63 436-504 18-80 (200)
113 3a00_A Guanylate kinase, GMP k 98.4 5.3E-08 1.8E-12 89.8 1.5 37 447-485 1-50 (186)
114 3c8u_A Fructokinase; YP_612366 98.4 6.8E-08 2.3E-12 90.7 1.8 43 444-486 19-64 (208)
115 3uie_A Adenylyl-sulfate kinase 98.4 1.1E-08 3.8E-13 95.5 -4.0 52 434-486 12-65 (200)
116 2w0m_A SSO2452; RECA, SSPF, un 98.4 2.6E-08 9.1E-13 94.2 -1.8 51 435-485 10-61 (235)
117 2vf7_A UVRA2, excinuclease ABC 98.3 1.7E-07 5.8E-12 105.1 4.0 36 436-471 512-548 (842)
118 1n0w_A DNA repair protein RAD5 98.3 1.8E-07 6.3E-12 89.2 2.7 61 443-503 20-87 (243)
119 2x8a_A Nuclear valosin-contain 98.3 4.1E-08 1.4E-12 96.6 -2.1 65 435-504 34-98 (274)
120 1e69_A Chromosome segregation 98.3 3E-07 1E-11 92.4 3.7 65 438-504 16-130 (322)
121 1zu4_A FTSY; GTPase, signal re 98.3 2.7E-07 9.3E-12 92.7 2.9 69 437-505 95-172 (320)
122 1in4_A RUVB, holliday junction 98.3 6.5E-09 2.2E-13 105.2 -9.4 71 435-507 32-114 (334)
123 3jvv_A Twitching mobility prot 98.2 1.4E-07 4.7E-12 96.2 -0.1 66 435-505 104-177 (356)
124 2bdt_A BH3686; alpha-beta prot 98.2 3E-07 1E-11 84.6 1.5 36 447-485 2-37 (189)
125 3nwj_A ATSK2; P loop, shikimat 98.2 1.2E-07 4E-12 92.0 -1.7 53 405-471 16-72 (250)
126 1pzn_A RAD51, DNA repair and r 98.2 2.8E-07 9.6E-12 93.8 0.2 51 435-485 118-176 (349)
127 2j41_A Guanylate kinase; GMP, 98.1 7.7E-07 2.6E-11 82.7 3.0 35 442-476 1-35 (207)
128 3kta_A Chromosome segregation 98.1 8.2E-07 2.8E-11 81.1 3.1 42 436-478 14-57 (182)
129 2bbw_A Adenylate kinase 4, AK4 98.1 4.3E-07 1.5E-11 87.5 -0.4 39 446-484 26-67 (246)
130 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 7E-07 2.4E-11 91.9 1.0 42 443-484 16-69 (392)
131 2r6f_A Excinuclease ABC subuni 98.1 1.1E-06 3.8E-11 99.0 2.7 33 436-468 639-671 (972)
132 1nij_A Hypothetical protein YJ 98.1 9.7E-07 3.3E-11 88.6 1.9 39 448-486 5-51 (318)
133 1udx_A The GTP-binding protein 98.0 1.9E-06 6.5E-11 89.5 3.7 35 437-471 147-181 (416)
134 2ygr_A Uvrabc system protein A 98.0 1.9E-06 6.3E-11 97.5 3.7 33 436-468 657-689 (993)
135 3cr8_A Sulfate adenylyltranfer 98.0 3.7E-07 1.3E-11 98.1 -2.0 43 443-485 365-409 (552)
136 3asz_A Uridine kinase; cytidin 98.0 1.2E-06 4.2E-11 81.8 1.7 30 444-473 3-32 (211)
137 2kjq_A DNAA-related protein; s 98.0 1.2E-06 4.3E-11 77.8 1.6 46 435-486 29-76 (149)
138 1cke_A CK, MSSA, protein (cyti 98.0 4.5E-07 1.5E-11 85.8 -1.5 58 447-504 5-73 (227)
139 3thx_A DNA mismatch repair pro 98.0 2.8E-06 9.6E-11 96.4 4.3 42 435-476 650-699 (934)
140 1kgd_A CASK, peripheral plasma 98.0 1.7E-06 5.8E-11 79.2 1.7 35 445-479 3-38 (180)
141 1ewq_A DNA mismatch repair pro 98.0 1.7E-06 5.7E-11 96.4 1.9 41 435-478 567-608 (765)
142 2vp4_A Deoxynucleoside kinase; 98.0 2.7E-06 9.4E-11 81.0 3.0 59 443-505 16-83 (230)
143 3lda_A DNA repair protein RAD5 98.0 2.6E-06 9E-11 88.0 3.0 68 436-503 166-241 (400)
144 3thx_B DNA mismatch repair pro 98.0 2E-06 6.8E-11 97.4 2.2 35 435-469 661-695 (918)
145 1rz3_A Hypothetical protein rb 98.0 1.6E-06 5.4E-11 80.8 1.2 42 444-485 19-60 (201)
146 1knq_A Gluconate kinase; ALFA/ 98.0 1.6E-06 5.3E-11 78.6 1.1 38 445-486 6-43 (175)
147 1svm_A Large T antigen; AAA+ f 97.9 4.8E-07 1.6E-11 92.8 -2.7 62 435-505 157-218 (377)
148 3pih_A Uvrabc system protein A 97.9 5.6E-06 1.9E-10 93.7 5.2 30 435-464 598-627 (916)
149 2o5v_A DNA replication and rep 97.9 4.6E-06 1.6E-10 85.0 4.1 47 435-482 15-74 (359)
150 1wb9_A DNA mismatch repair pro 97.9 4.1E-06 1.4E-10 93.8 3.6 37 435-472 596-632 (800)
151 1vma_A Cell division protein F 97.9 2.5E-06 8.6E-11 85.0 1.4 48 439-486 96-143 (306)
152 4ad8_A DNA repair protein RECN 97.9 3E-06 1E-10 90.8 2.0 72 435-508 49-159 (517)
153 1ixz_A ATP-dependent metallopr 97.9 4.8E-07 1.6E-11 87.4 -4.3 47 435-485 39-85 (254)
154 3ec2_A DNA replication protein 97.9 1.8E-06 6E-11 78.8 -0.4 36 442-477 33-68 (180)
155 1iy2_A ATP-dependent metallopr 97.8 5.3E-07 1.8E-11 88.5 -4.3 47 435-485 63-109 (278)
156 3ney_A 55 kDa erythrocyte memb 97.8 4.9E-06 1.7E-10 77.4 2.4 42 442-485 14-68 (197)
157 3vaa_A Shikimate kinase, SK; s 97.8 6.6E-06 2.3E-10 76.4 3.2 37 435-471 13-49 (199)
158 1ls1_A Signal recognition part 97.8 4.1E-06 1.4E-10 83.1 1.7 48 438-487 91-138 (295)
159 1oix_A RAS-related protein RAB 97.8 8.6E-06 2.9E-10 74.9 3.5 37 449-485 31-78 (191)
160 1ye8_A Protein THEP1, hypothet 97.8 4.8E-06 1.6E-10 76.3 1.7 26 449-474 2-27 (178)
161 3tau_A Guanylate kinase, GMP k 97.8 7.7E-06 2.6E-10 76.6 3.1 29 445-473 6-34 (208)
162 3tqc_A Pantothenate kinase; bi 97.8 1.9E-06 6.7E-11 86.3 -1.1 48 435-482 74-129 (321)
163 2p67_A LAO/AO transport system 97.7 3.2E-06 1.1E-10 85.6 -0.7 51 435-485 44-94 (341)
164 2cvh_A DNA repair and recombin 97.7 3.6E-06 1.2E-10 78.8 -0.8 48 435-484 7-55 (220)
165 2px0_A Flagellar biosynthesis 97.7 1.1E-05 3.7E-10 80.1 2.6 42 445-486 103-145 (296)
166 3k1j_A LON protease, ATP-depen 97.7 6.8E-06 2.3E-10 89.6 1.0 64 435-504 48-112 (604)
167 3qf7_A RAD50; ABC-ATPase, ATPa 97.7 1.7E-05 6E-10 81.0 3.9 33 435-468 12-44 (365)
168 2dr3_A UPF0273 protein PH0284; 97.7 5.2E-06 1.8E-10 79.1 -0.5 67 435-503 10-78 (247)
169 1w1w_A Structural maintenance 97.7 1.5E-05 5E-10 83.3 2.8 35 442-476 21-55 (430)
170 1sxj_E Activator 1 40 kDa subu 97.7 1.1E-05 3.9E-10 81.3 1.9 55 450-507 39-94 (354)
171 2f9l_A RAB11B, member RAS onco 97.6 2.2E-05 7.5E-10 72.5 3.1 37 449-485 7-54 (199)
172 2www_A Methylmalonic aciduria 97.5 2.1E-05 7.2E-10 79.9 2.0 41 445-485 72-112 (349)
173 3m6a_A ATP-dependent protease 97.5 1.2E-05 4.2E-10 86.5 -0.4 67 435-503 97-163 (543)
174 2qt1_A Nicotinamide riboside k 97.5 5.4E-05 1.8E-09 70.4 3.9 31 442-472 16-46 (207)
175 1tf7_A KAIC; homohexamer, hexa 97.5 2.5E-05 8.5E-10 83.7 1.6 43 441-484 275-319 (525)
176 2dy1_A Elongation factor G; tr 97.4 3E-05 1E-09 85.5 0.6 62 441-504 3-66 (665)
177 2pez_A Bifunctional 3'-phospho 97.3 4.4E-05 1.5E-09 69.3 1.2 40 445-485 3-44 (179)
178 2ffh_A Protein (FFH); SRP54, s 97.3 6.6E-05 2.2E-09 78.0 2.5 48 438-487 91-138 (425)
179 1kag_A SKI, shikimate kinase I 97.3 6.2E-05 2.1E-09 67.6 2.0 34 446-483 3-36 (173)
180 1j8m_F SRP54, signal recogniti 97.3 5.1E-05 1.7E-09 75.2 1.1 48 438-486 89-137 (297)
181 1nlf_A Regulatory protein REPA 97.2 0.00013 4.4E-09 71.3 2.9 31 443-473 26-56 (279)
182 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00017 5.7E-09 63.9 3.2 29 439-468 16-44 (149)
183 1m7g_A Adenylylsulfate kinase; 97.2 6.1E-05 2.1E-09 70.4 -0.0 44 442-485 20-65 (211)
184 1sxj_C Activator 1 40 kDa subu 97.1 1.1E-05 3.9E-10 81.2 -5.6 65 435-499 32-98 (340)
185 1m2o_B GTP-binding protein SAR 97.1 0.00024 8.3E-09 64.9 3.6 49 435-484 12-68 (190)
186 4eaq_A DTMP kinase, thymidylat 97.0 0.00025 8.5E-09 67.4 2.8 46 435-481 11-59 (229)
187 1mky_A Probable GTP-binding pr 97.0 0.00028 9.7E-09 73.7 3.4 37 449-485 182-230 (439)
188 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00042 1.4E-08 70.6 4.5 37 449-485 181-228 (364)
189 1jjv_A Dephospho-COA kinase; P 97.0 0.00027 9.4E-09 65.4 2.9 29 449-482 4-32 (206)
190 1f6b_A SAR1; gtpases, N-termin 97.0 0.00017 5.7E-09 66.5 1.3 49 435-484 14-70 (198)
191 3ice_A Transcription terminati 97.0 0.00011 3.8E-09 74.7 0.0 53 406-472 133-199 (422)
192 2gj8_A MNME, tRNA modification 97.0 0.00054 1.8E-08 61.5 4.4 40 445-484 2-53 (172)
193 3t34_A Dynamin-related protein 96.9 0.00027 9.3E-09 71.8 2.4 42 435-479 25-68 (360)
194 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00011 3.6E-09 78.1 -0.9 48 435-486 54-101 (499)
195 3hr8_A Protein RECA; alpha and 96.9 0.00019 6.5E-09 72.8 0.9 65 436-504 48-115 (356)
196 2yvu_A Probable adenylyl-sulfa 96.8 0.00031 1.1E-08 64.0 1.5 42 443-484 9-51 (186)
197 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00052 1.8E-08 70.4 3.0 41 443-483 18-69 (396)
198 2qag_A Septin-2, protein NEDD5 96.8 0.00016 5.5E-09 73.6 -0.9 51 406-477 17-67 (361)
199 2wjg_A FEOB, ferrous iron tran 96.7 0.00083 2.8E-08 60.6 3.8 36 449-484 9-55 (188)
200 2wji_A Ferrous iron transport 96.7 0.0013 4.6E-08 58.2 4.8 23 449-471 5-27 (165)
201 3qkt_A DNA double-strand break 96.7 0.00091 3.1E-08 67.3 3.7 29 438-467 15-43 (339)
202 3qks_A DNA double-strand break 96.6 0.001 3.4E-08 61.9 3.5 29 439-468 16-44 (203)
203 1ega_A Protein (GTP-binding pr 96.6 0.00071 2.4E-08 67.0 2.1 27 445-471 6-32 (301)
204 1y63_A LMAJ004144AAA protein; 96.5 0.001 3.4E-08 60.6 2.9 32 439-470 2-33 (184)
205 3t61_A Gluconokinase; PSI-biol 96.5 0.0004 1.4E-08 64.1 0.1 35 447-485 18-52 (202)
206 1odf_A YGR205W, hypothetical 3 96.5 0.00061 2.1E-08 67.2 1.2 29 446-474 30-58 (290)
207 3kl4_A SRP54, signal recogniti 96.4 0.001 3.6E-08 69.1 2.4 41 446-486 96-136 (433)
208 2qor_A Guanylate kinase; phosp 96.3 0.0014 4.8E-08 60.6 2.5 29 444-472 9-37 (204)
209 2if2_A Dephospho-COA kinase; a 96.3 0.0013 4.3E-08 60.7 2.1 21 449-469 3-23 (204)
210 1np6_A Molybdopterin-guanine d 96.2 0.0016 5.4E-08 59.1 2.3 37 448-484 7-46 (174)
211 3r20_A Cytidylate kinase; stru 96.2 0.00081 2.8E-08 64.0 0.1 58 446-503 8-76 (233)
212 3cm0_A Adenylate kinase; ATP-b 96.1 0.0012 4.1E-08 59.8 0.9 24 445-468 2-25 (186)
213 2ga8_A Hypothetical 39.9 kDa p 96.1 0.00046 1.6E-08 69.6 -2.0 38 435-472 10-49 (359)
214 1q3t_A Cytidylate kinase; nucl 96.1 0.0014 4.9E-08 62.1 1.2 36 444-479 13-51 (236)
215 2zej_A Dardarin, leucine-rich 96.1 0.0028 9.6E-08 57.2 3.0 23 449-471 4-26 (184)
216 3lxx_A GTPase IMAP family memb 96.0 0.0039 1.3E-07 59.0 3.7 28 449-476 31-58 (239)
217 2p5t_B PEZT; postsegregational 96.0 0.0023 7.9E-08 61.4 2.0 40 444-485 29-68 (253)
218 2ius_A DNA translocase FTSK; n 95.9 0.0031 1.1E-07 66.8 2.8 48 439-486 159-208 (512)
219 1jal_A YCHF protein; nucleotid 95.8 0.0053 1.8E-07 62.3 3.8 35 448-482 3-48 (363)
220 1fzq_A ADP-ribosylation factor 95.8 0.0055 1.9E-07 55.1 3.6 36 449-484 18-61 (181)
221 3auy_A DNA double-strand break 95.6 0.0065 2.2E-07 61.8 4.0 32 436-468 15-46 (371)
222 1lv7_A FTSH; alpha/beta domain 95.6 0.0045 1.6E-07 59.2 2.4 44 438-485 38-81 (257)
223 1ypw_A Transitional endoplasmi 95.6 0.0013 4.6E-08 73.9 -1.7 43 441-485 232-274 (806)
224 4ag6_A VIRB4 ATPase, type IV s 95.5 0.0045 1.6E-07 63.3 2.3 36 446-481 34-69 (392)
225 2zr9_A Protein RECA, recombina 95.5 0.005 1.7E-07 62.2 2.3 48 436-483 48-98 (349)
226 3ihw_A Centg3; RAS, centaurin, 95.5 0.012 4.2E-07 53.0 4.8 37 449-485 22-67 (184)
227 2vf7_A UVRA2, excinuclease ABC 95.4 0.0081 2.8E-07 67.4 4.0 30 435-464 24-53 (842)
228 3k53_A Ferrous iron transport 95.4 0.0064 2.2E-07 58.9 2.8 24 449-472 5-28 (271)
229 2r6a_A DNAB helicase, replicat 95.4 0.0019 6.6E-08 67.6 -1.1 51 435-485 191-242 (454)
230 3kb2_A SPBC2 prophage-derived 95.1 0.01 3.5E-07 52.5 2.9 23 449-471 3-25 (173)
231 1gvn_B Zeta; postsegregational 95.0 0.011 3.9E-07 57.8 3.2 36 446-483 32-67 (287)
232 2rhm_A Putative kinase; P-loop 95.0 0.01 3.4E-07 53.7 2.5 26 445-470 3-28 (193)
233 1gtv_A TMK, thymidylate kinase 94.9 0.0041 1.4E-07 57.4 -0.2 26 449-474 2-27 (214)
234 3cf0_A Transitional endoplasmi 94.9 0.0064 2.2E-07 59.9 1.0 41 443-485 45-85 (301)
235 1vht_A Dephospho-COA kinase; s 94.9 0.013 4.6E-07 54.3 3.2 24 446-469 3-26 (218)
236 1uf9_A TT1252 protein; P-loop, 94.8 0.011 3.8E-07 53.9 2.5 32 448-484 9-40 (203)
237 1kht_A Adenylate kinase; phosp 94.8 0.014 4.8E-07 52.6 3.1 25 447-471 3-27 (192)
238 2ygr_A Uvrabc system protein A 94.8 0.015 5E-07 66.0 3.8 30 435-464 34-63 (993)
239 2r6f_A Excinuclease ABC subuni 94.8 0.015 5.1E-07 65.8 3.8 30 435-464 32-61 (972)
240 1qhx_A CPT, protein (chloramph 94.8 0.016 5.3E-07 51.8 3.2 25 447-471 3-27 (178)
241 3lw7_A Adenylate kinase relate 94.8 0.015 5E-07 51.3 3.0 19 449-467 3-21 (179)
242 1v5w_A DMC1, meiotic recombina 94.7 0.012 4E-07 59.3 2.4 42 443-484 118-166 (343)
243 2v54_A DTMP kinase, thymidylat 94.6 0.017 5.9E-07 52.7 3.1 26 446-471 3-28 (204)
244 3pih_A Uvrabc system protein A 94.5 0.014 4.6E-07 66.2 2.7 30 435-464 12-41 (916)
245 1xjc_A MOBB protein homolog; s 94.5 0.013 4.4E-07 52.8 1.9 26 448-473 5-30 (169)
246 2erx_A GTP-binding protein DI- 94.5 0.029 1E-06 49.0 4.2 22 449-470 5-26 (172)
247 3llm_A ATP-dependent RNA helic 94.4 0.013 4.5E-07 55.3 2.0 27 443-469 72-98 (235)
248 3b1v_A Ferrous iron uptake tra 94.4 0.019 6.4E-07 55.8 3.1 23 449-471 5-27 (272)
249 1ex7_A Guanylate kinase; subst 94.4 0.018 6.1E-07 52.7 2.7 21 450-470 4-24 (186)
250 1ko7_A HPR kinase/phosphatase; 94.4 0.031 1E-06 55.4 4.5 34 435-469 133-166 (314)
251 1sky_E F1-ATPase, F1-ATP synth 94.3 0.0064 2.2E-07 63.5 -0.5 46 435-481 140-185 (473)
252 2z43_A DNA repair and recombin 94.3 0.015 5.3E-07 57.8 2.2 42 443-484 103-151 (324)
253 2jaq_A Deoxyguanosine kinase; 94.3 0.021 7.1E-07 52.0 2.9 21 449-469 2-22 (205)
254 3trf_A Shikimate kinase, SK; a 94.3 0.023 7.7E-07 51.1 3.1 24 447-470 5-28 (185)
255 3iij_A Coilin-interacting nucl 94.2 0.02 6.8E-07 51.4 2.7 24 445-468 9-32 (180)
256 2ze6_A Isopentenyl transferase 94.1 0.022 7.6E-07 54.6 2.9 23 449-471 3-25 (253)
257 4fcw_A Chaperone protein CLPB; 94.1 0.018 6.2E-07 56.3 2.3 36 448-483 48-84 (311)
258 2e87_A Hypothetical protein PH 94.1 0.025 8.5E-07 57.1 3.3 24 448-471 168-191 (357)
259 3lxw_A GTPase IMAP family memb 94.1 0.023 7.8E-07 54.2 2.8 23 449-471 23-45 (247)
260 2wwf_A Thymidilate kinase, put 94.1 0.024 8.3E-07 52.0 2.9 26 445-470 8-33 (212)
261 2plr_A DTMP kinase, probable t 94.1 0.026 9.1E-07 51.6 3.2 28 446-473 3-30 (213)
262 2c95_A Adenylate kinase 1; tra 94.1 0.023 7.9E-07 51.4 2.7 26 445-470 7-32 (196)
263 1via_A Shikimate kinase; struc 94.0 0.021 7.1E-07 51.1 2.3 23 449-471 6-28 (175)
264 1z0j_A RAB-22, RAS-related pro 94.0 0.027 9.3E-07 49.1 3.0 22 450-471 9-30 (170)
265 1nn5_A Similar to deoxythymidy 94.0 0.026 8.9E-07 51.9 3.0 26 444-469 6-31 (215)
266 3q72_A GTP-binding protein RAD 94.0 0.025 8.5E-07 49.4 2.7 23 450-472 5-27 (166)
267 3iby_A Ferrous iron transport 94.0 0.031 1.1E-06 53.7 3.6 23 449-471 3-25 (256)
268 1tev_A UMP-CMP kinase; ploop, 94.0 0.028 9.5E-07 50.7 3.1 23 447-469 3-25 (196)
269 1ly1_A Polynucleotide kinase; 94.0 0.027 9.2E-07 50.1 2.9 22 448-469 3-24 (181)
270 2dby_A GTP-binding protein; GD 93.8 0.023 7.9E-07 57.7 2.5 21 450-470 4-24 (368)
271 2ged_A SR-beta, signal recogni 93.8 0.024 8.2E-07 51.0 2.3 23 449-471 50-72 (193)
272 3cbq_A GTP-binding protein REM 93.8 0.035 1.2E-06 50.5 3.5 22 449-470 25-46 (195)
273 1moz_A ARL1, ADP-ribosylation 93.8 0.022 7.5E-07 50.7 2.0 21 449-469 20-40 (183)
274 2nzj_A GTP-binding protein REM 93.7 0.03 1E-06 49.2 2.8 23 449-471 6-28 (175)
275 2vli_A Antibiotic resistance p 93.7 0.026 9E-07 50.5 2.4 24 446-469 4-27 (183)
276 3tw8_B RAS-related protein RAB 93.7 0.032 1.1E-06 49.2 2.9 23 449-471 11-33 (181)
277 2fn4_A P23, RAS-related protei 93.6 0.038 1.3E-06 48.7 3.3 22 449-470 11-32 (181)
278 2lkc_A Translation initiation 93.6 0.04 1.4E-06 48.6 3.3 23 448-470 9-31 (178)
279 1svi_A GTP-binding protein YSX 93.5 0.03 1E-06 50.3 2.5 23 449-471 25-47 (195)
280 3q85_A GTP-binding protein REM 93.5 0.036 1.2E-06 48.4 2.8 22 450-471 5-26 (169)
281 2xtp_A GTPase IMAP family memb 93.5 0.033 1.1E-06 53.1 2.8 23 449-471 24-46 (260)
282 3pqc_A Probable GTP-binding pr 93.4 0.032 1.1E-06 50.0 2.5 23 449-471 25-47 (195)
283 1zuh_A Shikimate kinase; alpha 93.4 0.039 1.3E-06 48.8 3.0 22 448-469 8-29 (168)
284 2bwj_A Adenylate kinase 5; pho 93.4 0.025 8.7E-07 51.3 1.7 27 445-471 10-36 (199)
285 1fnn_A CDC6P, cell division co 93.4 0.037 1.3E-06 55.7 3.1 36 449-484 46-83 (389)
286 2ce2_X GTPase HRAS; signaling 93.4 0.028 9.5E-07 48.6 1.9 22 449-470 5-26 (166)
287 2oil_A CATX-8, RAS-related pro 93.4 0.041 1.4E-06 49.5 3.1 22 449-470 27-48 (193)
288 3t5g_A GTP-binding protein RHE 93.3 0.058 2E-06 47.8 4.0 29 449-477 8-41 (181)
289 1z2a_A RAS-related protein RAB 93.3 0.039 1.3E-06 48.0 2.8 22 449-470 7-28 (168)
290 1aky_A Adenylate kinase; ATP:A 93.3 0.043 1.5E-06 50.9 3.2 25 446-470 3-27 (220)
291 2qby_A CDC6 homolog 1, cell di 93.3 0.022 7.5E-07 57.1 1.2 39 445-483 43-85 (386)
292 1kao_A RAP2A; GTP-binding prot 93.3 0.031 1.1E-06 48.4 2.1 22 449-470 5-26 (167)
293 3ake_A Cytidylate kinase; CMP 93.3 0.041 1.4E-06 50.2 2.9 22 449-470 4-25 (208)
294 2cxx_A Probable GTP-binding pr 93.3 0.045 1.5E-06 48.8 3.2 22 450-471 4-25 (190)
295 3clv_A RAB5 protein, putative; 93.2 0.04 1.4E-06 49.5 2.8 21 450-470 10-30 (208)
296 2dyk_A GTP-binding protein; GT 93.2 0.032 1.1E-06 48.2 2.1 23 449-471 3-25 (161)
297 2z0h_A DTMP kinase, thymidylat 93.2 0.042 1.4E-06 49.7 2.9 23 449-471 2-24 (197)
298 1u8z_A RAS-related protein RAL 93.2 0.033 1.1E-06 48.3 2.1 22 449-470 6-27 (168)
299 1zd8_A GTP:AMP phosphotransfer 93.2 0.041 1.4E-06 51.4 2.9 25 445-469 5-29 (227)
300 1wf3_A GTP-binding protein; GT 93.2 0.042 1.4E-06 54.1 3.1 22 449-470 9-30 (301)
301 1nks_A Adenylate kinase; therm 93.1 0.041 1.4E-06 49.4 2.7 24 449-472 3-26 (194)
302 3t1o_A Gliding protein MGLA; G 93.1 0.036 1.2E-06 49.7 2.3 25 449-473 16-40 (198)
303 2ew1_A RAS-related protein RAB 93.1 0.062 2.1E-06 49.2 3.9 21 449-469 28-48 (201)
304 3t5d_A Septin-7; GTP-binding p 93.1 0.038 1.3E-06 53.4 2.6 21 450-470 11-31 (274)
305 1m7b_A RND3/RHOE small GTP-bin 93.1 0.05 1.7E-06 48.6 3.2 21 450-470 10-30 (184)
306 1ky3_A GTP-binding protein YPT 93.0 0.036 1.2E-06 48.9 2.1 23 449-471 10-32 (182)
307 3a1s_A Iron(II) transport prot 93.0 0.047 1.6E-06 52.4 3.0 23 449-471 7-29 (258)
308 1z08_A RAS-related protein RAB 93.0 0.037 1.3E-06 48.3 2.1 22 449-470 8-29 (170)
309 1g16_A RAS-related protein SEC 93.0 0.035 1.2E-06 48.5 1.9 22 450-471 6-27 (170)
310 1c1y_A RAS-related protein RAP 93.0 0.048 1.6E-06 47.4 2.8 21 449-469 5-25 (167)
311 1ek0_A Protein (GTP-binding pr 92.9 0.048 1.6E-06 47.4 2.8 22 450-471 6-27 (170)
312 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.038 1.3E-06 48.7 2.1 21 450-470 10-30 (177)
313 3i8s_A Ferrous iron transport 92.9 0.046 1.6E-06 52.9 2.8 23 449-471 5-27 (274)
314 1r2q_A RAS-related protein RAB 92.9 0.04 1.4E-06 48.0 2.1 20 450-469 9-28 (170)
315 3fb4_A Adenylate kinase; psych 92.9 0.05 1.7E-06 50.2 2.9 20 449-468 2-21 (216)
316 2ce7_A Cell division protein F 92.8 0.019 6.6E-07 60.3 0.0 45 436-484 40-84 (476)
317 4bas_A ADP-ribosylation factor 92.8 0.066 2.3E-06 48.2 3.6 22 449-470 19-40 (199)
318 3a4m_A L-seryl-tRNA(SEC) kinas 92.8 0.054 1.9E-06 52.0 3.2 25 446-470 3-27 (260)
319 2w58_A DNAI, primosome compone 92.7 0.052 1.8E-06 49.5 2.8 31 448-478 55-85 (202)
320 2bov_A RAla, RAS-related prote 92.7 0.067 2.3E-06 48.4 3.5 21 450-470 17-37 (206)
321 4dsu_A GTPase KRAS, isoform 2B 92.7 0.042 1.4E-06 48.9 2.1 22 449-470 6-27 (189)
322 3cnl_A YLQF, putative uncharac 92.7 0.057 1.9E-06 52.1 3.1 29 448-476 100-128 (262)
323 1ksh_A ARF-like protein 2; sma 92.7 0.056 1.9E-06 48.2 2.9 23 449-471 20-42 (186)
324 2cdn_A Adenylate kinase; phosp 92.7 0.062 2.1E-06 49.0 3.2 24 447-470 20-43 (201)
325 1ukz_A Uridylate kinase; trans 92.6 0.057 2E-06 49.2 3.0 23 447-469 15-37 (203)
326 3bc1_A RAS-related protein RAB 92.6 0.044 1.5E-06 48.9 2.1 22 449-470 13-34 (195)
327 2hxs_A RAB-26, RAS-related pro 92.6 0.051 1.7E-06 47.9 2.5 22 450-471 9-30 (178)
328 3dm5_A SRP54, signal recogniti 92.6 0.057 2E-06 56.0 3.2 40 446-485 99-138 (443)
329 3def_A T7I23.11 protein; chlor 92.6 0.054 1.9E-06 51.9 2.8 23 449-471 38-60 (262)
330 2pbr_A DTMP kinase, thymidylat 92.6 0.06 2E-06 48.4 2.9 23 449-471 2-24 (195)
331 4dhe_A Probable GTP-binding pr 92.6 0.038 1.3E-06 51.0 1.6 23 449-471 31-53 (223)
332 1upt_A ARL1, ADP-ribosylation 92.5 0.046 1.6E-06 47.7 2.1 21 449-469 9-29 (171)
333 1r8s_A ADP-ribosylation factor 92.5 0.047 1.6E-06 47.4 2.1 20 450-469 3-22 (164)
334 3dl0_A Adenylate kinase; phosp 92.5 0.06 2.1E-06 49.7 2.9 21 449-469 2-22 (216)
335 2g6b_A RAS-related protein RAB 92.5 0.047 1.6E-06 48.2 2.1 22 449-470 12-33 (180)
336 1qf9_A UMP/CMP kinase, protein 92.5 0.061 2.1E-06 48.3 2.9 22 448-469 7-28 (194)
337 2h57_A ADP-ribosylation factor 92.4 0.052 1.8E-06 48.7 2.4 23 449-471 23-45 (190)
338 1z0f_A RAB14, member RAS oncog 92.4 0.049 1.7E-06 47.9 2.1 23 449-471 17-39 (179)
339 2il1_A RAB12; G-protein, GDP, 92.4 0.065 2.2E-06 48.3 2.9 22 450-471 29-50 (192)
340 1zak_A Adenylate kinase; ATP:A 92.4 0.053 1.8E-06 50.4 2.4 23 447-469 5-27 (222)
341 3con_A GTPase NRAS; structural 92.3 0.05 1.7E-06 48.7 2.1 22 449-470 23-44 (190)
342 3reg_A RHO-like small GTPase; 92.3 0.079 2.7E-06 47.7 3.5 23 449-471 25-47 (194)
343 2pt5_A Shikimate kinase, SK; a 92.3 0.068 2.3E-06 47.0 2.9 22 449-470 2-23 (168)
344 1e6c_A Shikimate kinase; phosp 92.2 0.057 2E-06 47.7 2.3 22 449-470 4-25 (173)
345 2a9k_A RAS-related protein RAL 92.2 0.053 1.8E-06 48.1 2.1 22 449-470 20-41 (187)
346 2y8e_A RAB-protein 6, GH09086P 92.2 0.063 2.2E-06 47.2 2.6 22 449-470 16-37 (179)
347 1a7j_A Phosphoribulokinase; tr 92.2 0.046 1.6E-06 53.5 1.8 25 447-471 5-29 (290)
348 1vg8_A RAS-related protein RAB 92.2 0.052 1.8E-06 49.3 2.1 23 449-471 10-32 (207)
349 2wsm_A Hydrogenase expression/ 92.2 0.052 1.8E-06 50.1 2.1 23 449-471 32-54 (221)
350 1zbd_A Rabphilin-3A; G protein 92.2 0.068 2.3E-06 48.5 2.8 23 449-471 10-32 (203)
351 1nrj_B SR-beta, signal recogni 92.2 0.058 2E-06 49.6 2.4 23 449-471 14-36 (218)
352 2iyv_A Shikimate kinase, SK; t 92.1 0.059 2E-06 48.3 2.3 22 448-469 3-24 (184)
353 2efe_B Small GTP-binding prote 92.0 0.058 2E-06 47.7 2.1 22 449-470 14-35 (181)
354 3v9p_A DTMP kinase, thymidylat 92.0 0.068 2.3E-06 50.4 2.6 29 444-472 22-50 (227)
355 3kkq_A RAS-related protein M-R 92.0 0.075 2.6E-06 47.1 2.8 21 450-470 21-41 (183)
356 3llu_A RAS-related GTP-binding 92.0 0.073 2.5E-06 48.2 2.8 24 449-472 22-45 (196)
357 1mh1_A RAC1; GTP-binding, GTPa 92.0 0.059 2E-06 47.8 2.1 21 449-469 7-27 (186)
358 2gf0_A GTP-binding protein DI- 92.0 0.054 1.9E-06 48.7 1.9 21 449-469 10-30 (199)
359 2o52_A RAS-related protein RAB 92.0 0.07 2.4E-06 48.5 2.6 22 449-470 27-48 (200)
360 1jwy_B Dynamin A GTPase domain 91.9 0.064 2.2E-06 52.6 2.5 23 449-471 26-48 (315)
361 3tkl_A RAS-related protein RAB 91.9 0.075 2.6E-06 47.6 2.8 23 449-471 18-40 (196)
362 1gwn_A RHO-related GTP-binding 91.9 0.086 2.9E-06 48.4 3.2 22 449-470 30-51 (205)
363 2bme_A RAB4A, RAS-related prot 91.9 0.07 2.4E-06 47.4 2.6 22 449-470 12-33 (186)
364 1zj6_A ADP-ribosylation factor 91.9 0.07 2.4E-06 47.7 2.6 21 449-469 18-38 (187)
365 3iev_A GTP-binding protein ERA 91.9 0.077 2.6E-06 52.3 3.1 23 449-471 12-34 (308)
366 2qmh_A HPR kinase/phosphorylas 91.9 0.14 4.8E-06 47.2 4.5 35 435-470 23-57 (205)
367 2gf9_A RAS-related protein RAB 91.9 0.061 2.1E-06 48.2 2.1 23 449-471 24-46 (189)
368 2grj_A Dephospho-COA kinase; T 91.9 0.08 2.7E-06 48.5 2.9 23 448-470 13-35 (192)
369 3bos_A Putative DNA replicatio 91.9 0.087 3E-06 48.8 3.3 28 446-473 51-78 (242)
370 2qu8_A Putative nucleolar GTP- 91.8 0.086 2.9E-06 49.1 3.2 23 449-471 31-53 (228)
371 3tlx_A Adenylate kinase 2; str 91.8 0.085 2.9E-06 50.0 3.1 23 447-469 29-51 (243)
372 2xb4_A Adenylate kinase; ATP-b 91.7 0.083 2.8E-06 49.3 2.9 21 449-469 2-22 (223)
373 3c5c_A RAS-like protein 12; GD 91.7 0.11 3.6E-06 46.7 3.5 29 449-477 23-56 (187)
374 4edh_A DTMP kinase, thymidylat 91.7 0.093 3.2E-06 48.9 3.2 29 445-473 4-32 (213)
375 2fg5_A RAB-22B, RAS-related pr 91.7 0.061 2.1E-06 48.5 1.9 22 449-470 25-46 (192)
376 2h17_A ADP-ribosylation factor 91.7 0.069 2.4E-06 47.5 2.2 22 449-470 23-44 (181)
377 4djt_A GTP-binding nuclear pro 91.6 0.085 2.9E-06 48.4 2.9 23 449-471 13-35 (218)
378 2a5j_A RAS-related protein RAB 91.6 0.068 2.3E-06 48.1 2.1 22 449-470 23-44 (191)
379 3oes_A GTPase rhebl1; small GT 91.6 0.063 2.2E-06 48.8 1.9 23 449-471 26-48 (201)
380 1h65_A Chloroplast outer envel 91.6 0.084 2.9E-06 50.8 2.8 23 449-471 41-63 (270)
381 1uj2_A Uridine-cytidine kinase 91.6 0.088 3E-06 50.1 2.9 23 448-470 23-45 (252)
382 2cjw_A GTP-binding protein GEM 91.5 0.07 2.4E-06 48.3 2.1 21 449-469 8-28 (192)
383 2v3c_C SRP54, signal recogniti 91.5 0.041 1.4E-06 57.1 0.5 38 448-485 100-137 (432)
384 2bcg_Y Protein YP2, GTP-bindin 91.5 0.066 2.3E-06 48.7 1.9 22 449-470 10-31 (206)
385 2q3h_A RAS homolog gene family 91.5 0.092 3.1E-06 47.5 2.8 22 449-470 22-43 (201)
386 1ypw_A Transitional endoplasmi 91.4 0.021 7.2E-07 64.1 -1.9 45 439-485 503-547 (806)
387 1z06_A RAS-related protein RAB 91.4 0.072 2.5E-06 47.7 2.1 21 449-469 22-42 (189)
388 3dz8_A RAS-related protein RAB 91.4 0.068 2.3E-06 48.1 1.9 23 449-471 25-47 (191)
389 1zd9_A ADP-ribosylation factor 91.4 0.073 2.5E-06 47.7 2.1 21 449-469 24-44 (188)
390 3bwd_D RAC-like GTP-binding pr 91.4 0.088 3E-06 46.5 2.6 22 449-470 10-31 (182)
391 2f7s_A C25KG, RAS-related prot 91.4 0.093 3.2E-06 48.1 2.8 23 449-471 27-49 (217)
392 1x3s_A RAS-related protein RAB 91.4 0.075 2.6E-06 47.5 2.1 22 449-470 17-38 (195)
393 2atv_A RERG, RAS-like estrogen 91.3 0.075 2.6E-06 48.0 2.1 22 449-470 30-51 (196)
394 2p5s_A RAS and EF-hand domain 91.3 0.076 2.6E-06 48.1 2.1 23 449-471 30-52 (199)
395 2j1l_A RHO-related GTP-binding 91.3 0.088 3E-06 48.4 2.6 22 449-470 36-57 (214)
396 2fu5_C RAS-related protein RAB 91.2 0.067 2.3E-06 47.5 1.6 23 449-471 10-32 (183)
397 2b6h_A ADP-ribosylation factor 91.2 0.096 3.3E-06 47.3 2.7 22 449-470 31-52 (192)
398 3umf_A Adenylate kinase; rossm 91.2 0.086 3E-06 49.3 2.4 25 445-469 27-51 (217)
399 3be4_A Adenylate kinase; malar 91.1 0.1 3.4E-06 48.4 2.8 24 447-470 5-28 (217)
400 4gzl_A RAS-related C3 botulinu 91.1 0.094 3.2E-06 47.9 2.5 30 449-478 32-66 (204)
401 3lv8_A DTMP kinase, thymidylat 91.1 0.11 3.8E-06 49.3 3.0 28 446-473 26-53 (236)
402 2fh5_B SR-beta, signal recogni 91.1 0.11 3.9E-06 47.4 3.1 22 449-470 9-30 (214)
403 3a8t_A Adenylate isopentenyltr 91.0 0.13 4.5E-06 51.4 3.6 27 446-472 39-65 (339)
404 1e4v_A Adenylate kinase; trans 91.0 0.1 3.5E-06 48.2 2.7 21 449-469 2-22 (214)
405 3cph_A RAS-related protein SEC 91.0 0.084 2.9E-06 48.1 2.1 22 449-470 22-43 (213)
406 2f6r_A COA synthase, bifunctio 91.0 0.099 3.4E-06 50.8 2.7 21 448-468 76-96 (281)
407 2iwr_A Centaurin gamma 1; ANK 90.9 0.067 2.3E-06 47.2 1.3 22 449-470 9-30 (178)
408 2aka_B Dynamin-1; fusion prote 90.9 0.095 3.3E-06 50.8 2.5 23 449-471 28-50 (299)
409 3tqf_A HPR(Ser) kinase; transf 90.9 0.16 5.3E-06 45.8 3.6 34 435-469 5-38 (181)
410 3b9p_A CG5977-PA, isoform A; A 90.9 0.1 3.4E-06 50.7 2.6 26 446-471 53-78 (297)
411 4tmk_A Protein (thymidylate ki 90.8 0.12 4.1E-06 48.1 3.0 28 446-473 2-29 (213)
412 2fv8_A H6, RHO-related GTP-bin 90.8 0.084 2.9E-06 48.2 1.9 23 449-471 27-49 (207)
413 2xau_A PRE-mRNA-splicing facto 90.8 0.066 2.2E-06 59.8 1.3 32 444-475 106-137 (773)
414 1ak2_A Adenylate kinase isoenz 90.7 0.13 4.5E-06 48.2 3.2 26 446-471 15-40 (233)
415 3tmk_A Thymidylate kinase; pho 90.7 0.12 4.2E-06 48.2 2.9 29 445-473 3-31 (216)
416 2x77_A ADP-ribosylation factor 90.7 0.092 3.1E-06 46.9 2.0 22 449-470 24-45 (189)
417 2yc2_C IFT27, small RAB-relate 90.3 0.065 2.2E-06 48.5 0.7 22 449-470 22-43 (208)
418 2g3y_A GTP-binding protein GEM 90.3 0.13 4.6E-06 47.6 2.8 22 449-470 39-60 (211)
419 2h92_A Cytidylate kinase; ross 90.3 0.12 4.2E-06 47.6 2.5 24 447-470 3-26 (219)
420 4dcu_A GTP-binding protein ENG 90.3 0.12 3.9E-06 54.0 2.6 22 449-470 25-46 (456)
421 3p32_A Probable GTPase RV1496/ 90.2 0.12 4.2E-06 51.9 2.6 25 448-472 80-104 (355)
422 2gco_A H9, RHO-related GTP-bin 90.2 0.13 4.5E-06 46.7 2.6 22 449-470 27-48 (201)
423 2atx_A Small GTP binding prote 90.2 0.1 3.5E-06 46.8 1.9 22 449-470 20-41 (194)
424 1l8q_A Chromosomal replication 90.1 0.081 2.8E-06 52.2 1.2 35 448-482 38-73 (324)
425 3ld9_A DTMP kinase, thymidylat 90.0 0.17 5.7E-06 47.6 3.2 28 445-472 19-46 (223)
426 2hf9_A Probable hydrogenase ni 90.0 0.14 4.9E-06 47.2 2.7 23 449-471 40-62 (226)
427 1ltq_A Polynucleotide kinase; 89.9 0.15 5.1E-06 49.6 2.9 22 448-469 3-24 (301)
428 3q3j_B RHO-related GTP-binding 89.8 0.19 6.5E-06 46.2 3.5 30 449-478 29-63 (214)
429 3exa_A TRNA delta(2)-isopenten 89.8 0.17 5.8E-06 50.0 3.2 25 447-471 3-27 (322)
430 2orw_A Thymidine kinase; TMTK, 89.7 0.15 5.3E-06 46.1 2.6 22 446-467 2-24 (184)
431 3d3q_A TRNA delta(2)-isopenten 89.7 0.16 5.5E-06 50.8 2.9 25 448-472 8-32 (340)
432 1jbk_A CLPB protein; beta barr 89.6 0.19 6.3E-06 44.4 3.1 25 447-471 43-67 (195)
433 1puj_A YLQF, conserved hypothe 89.6 0.2 6.8E-06 48.7 3.5 24 449-472 122-145 (282)
434 4a1f_A DNAB helicase, replicat 89.6 0.071 2.4E-06 53.4 0.3 50 435-484 34-83 (338)
435 3zvl_A Bifunctional polynucleo 89.6 0.18 6E-06 52.0 3.3 36 445-484 256-291 (416)
436 3cpj_B GTP-binding protein YPT 89.5 0.13 4.5E-06 47.5 2.1 22 449-470 15-36 (223)
437 1u94_A RECA protein, recombina 89.5 0.15 5E-06 51.5 2.6 50 435-484 49-101 (356)
438 2hup_A RAS-related protein RAB 89.5 0.12 4.2E-06 46.9 1.9 22 449-470 31-52 (201)
439 2ocp_A DGK, deoxyguanosine kin 89.5 0.17 5.9E-06 47.6 2.9 26 446-471 1-26 (241)
440 1p5z_B DCK, deoxycytidine kina 89.4 0.15 5.2E-06 48.7 2.5 27 445-471 22-48 (263)
441 3sr0_A Adenylate kinase; phosp 89.3 0.19 6.4E-06 46.6 2.9 21 449-469 2-22 (206)
442 2j0v_A RAC-like GTP-binding pr 89.2 0.17 5.9E-06 46.1 2.6 21 449-469 11-31 (212)
443 2i1q_A DNA repair and recombin 89.1 0.21 7.1E-06 49.3 3.3 34 436-469 86-120 (322)
444 3l0i_B RAS-related protein RAB 89.1 0.077 2.6E-06 48.1 0.1 23 449-471 35-57 (199)
445 1wxq_A GTP-binding protein; st 89.0 0.18 6.1E-06 51.6 2.8 22 450-471 3-24 (397)
446 3bh0_A DNAB-like replicative h 89.0 0.11 3.7E-06 51.4 1.1 36 435-470 56-91 (315)
447 3sjy_A Translation initiation 88.9 0.19 6.6E-06 51.4 3.0 23 449-471 10-32 (403)
448 1lnz_A SPO0B-associated GTP-bi 88.8 0.23 8E-06 49.7 3.4 33 438-470 149-181 (342)
449 3crm_A TRNA delta(2)-isopenten 88.8 0.2 6.9E-06 49.7 2.9 24 448-471 6-29 (323)
450 3h4m_A Proteasome-activating n 88.8 0.17 5.7E-06 48.7 2.3 28 445-472 49-76 (285)
451 1sxj_D Activator 1 41 kDa subu 88.7 0.064 2.2E-06 53.2 -0.8 37 436-472 45-83 (353)
452 1njg_A DNA polymerase III subu 88.3 0.26 8.8E-06 45.2 3.1 24 449-472 47-70 (250)
453 3foz_A TRNA delta(2)-isopenten 88.0 0.27 9.2E-06 48.5 3.2 24 448-471 11-34 (316)
454 2qz4_A Paraplegin; AAA+, SPG7, 87.8 0.28 9.5E-06 46.3 3.1 25 447-471 39-63 (262)
455 1knx_A Probable HPR(Ser) kinas 87.7 0.5 1.7E-05 46.6 5.0 42 435-482 136-177 (312)
456 2p65_A Hypothetical protein PF 87.7 0.23 7.9E-06 43.8 2.3 27 447-473 43-69 (187)
457 3th5_A RAS-related C3 botulinu 87.6 0.1 3.5E-06 47.4 0.0 21 449-469 32-52 (204)
458 2hjg_A GTP-binding protein ENG 87.6 0.23 7.9E-06 51.3 2.6 23 449-471 5-27 (436)
459 2j37_W Signal recognition part 87.5 0.26 8.9E-06 52.0 3.0 25 446-470 100-124 (504)
460 2z4s_A Chromosomal replication 87.5 0.19 6.5E-06 52.1 1.9 37 447-483 130-169 (440)
461 2ck3_D ATP synthase subunit be 87.4 0.28 9.5E-06 51.2 3.0 39 442-480 148-186 (482)
462 1kk1_A EIF2gamma; initiation o 87.3 0.29 9.8E-06 50.2 3.1 23 449-471 12-34 (410)
463 3gj0_A GTP-binding nuclear pro 87.3 0.18 6E-06 46.5 1.3 27 450-476 18-49 (221)
464 2zts_A Putative uncharacterize 87.3 0.37 1.2E-05 44.9 3.6 32 436-467 18-50 (251)
465 2x2e_A Dynamin-1; nitration, h 87.2 0.23 7.9E-06 49.8 2.3 23 449-471 33-55 (353)
466 3gmt_A Adenylate kinase; ssgci 87.2 0.28 9.6E-06 46.2 2.7 21 449-469 10-30 (230)
467 3ec1_A YQEH GTPase; atnos1, at 87.1 0.22 7.6E-06 50.4 2.0 25 446-470 161-185 (369)
468 3l0o_A Transcription terminati 86.7 0.32 1.1E-05 49.5 2.9 33 439-471 167-199 (427)
469 3r7w_A Gtpase1, GTP-binding pr 86.6 0.35 1.2E-05 47.4 3.2 22 449-470 5-26 (307)
470 3geh_A MNME, tRNA modification 86.6 0.21 7.2E-06 52.2 1.6 39 447-485 224-274 (462)
471 3n70_A Transport activator; si 86.4 0.33 1.1E-05 41.8 2.5 27 447-473 24-50 (145)
472 2qpt_A EH domain-containing pr 86.2 0.31 1.1E-05 52.1 2.7 23 449-471 67-89 (550)
473 3h2y_A GTPase family protein; 86.1 0.24 8.3E-06 50.1 1.7 25 446-470 159-183 (368)
474 1s0u_A EIF-2-gamma, translatio 85.9 0.37 1.3E-05 49.3 3.0 23 449-471 10-32 (408)
475 2hjg_A GTP-binding protein ENG 85.8 0.35 1.2E-05 49.9 2.8 23 449-471 177-199 (436)
476 1yrb_A ATP(GTP)binding protein 85.6 0.41 1.4E-05 45.2 3.0 25 448-472 15-39 (262)
477 4hlc_A DTMP kinase, thymidylat 85.6 0.44 1.5E-05 43.9 3.1 25 448-472 3-27 (205)
478 2c78_A Elongation factor TU-A; 85.6 0.32 1.1E-05 49.7 2.4 22 449-470 13-34 (405)
479 3eph_A TRNA isopentenyltransfe 85.3 0.41 1.4E-05 48.9 2.9 24 448-471 3-26 (409)
480 1d2e_A Elongation factor TU (E 85.0 0.36 1.2E-05 49.3 2.4 22 449-470 5-26 (397)
481 2v1u_A Cell division control p 84.9 0.36 1.2E-05 48.1 2.4 39 446-484 43-88 (387)
482 2r62_A Cell division protease 84.8 0.15 5.1E-06 48.6 -0.6 22 450-471 47-68 (268)
483 1f5n_A Interferon-induced guan 84.7 0.42 1.4E-05 51.4 2.8 24 448-471 39-62 (592)
484 3dpu_A RAB family protein; roc 84.6 0.43 1.5E-05 50.7 2.8 22 450-471 44-65 (535)
485 3o47_A ADP-ribosylation factor 84.6 0.38 1.3E-05 47.7 2.3 23 449-471 167-189 (329)
486 3gee_A MNME, tRNA modification 84.5 0.35 1.2E-05 50.7 2.0 22 449-470 235-256 (476)
487 2h5e_A Peptide chain release f 84.3 0.36 1.2E-05 51.3 2.1 22 448-469 14-35 (529)
488 2q6t_A DNAB replication FORK h 84.3 0.27 9.2E-06 51.0 1.1 39 435-473 188-226 (444)
489 3e1s_A Exodeoxyribonuclease V, 84.0 0.39 1.3E-05 51.6 2.2 36 446-481 203-238 (574)
490 3tr5_A RF-3, peptide chain rel 83.8 0.47 1.6E-05 50.4 2.7 21 448-468 14-34 (528)
491 2xxa_A Signal recognition part 83.8 0.54 1.8E-05 48.7 3.1 27 447-473 100-126 (433)
492 1g7s_A Translation initiation 83.7 0.43 1.5E-05 51.5 2.4 22 449-470 7-28 (594)
493 3uk6_A RUVB-like 2; hexameric 83.7 0.57 2E-05 46.6 3.2 39 446-484 69-107 (368)
494 4a9a_A Ribosome-interacting GT 83.7 0.42 1.4E-05 48.4 2.2 37 449-485 74-121 (376)
495 2qgz_A Helicase loader, putati 83.4 0.63 2.1E-05 45.7 3.3 26 447-472 152-177 (308)
496 3pvs_A Replication-associated 83.3 0.32 1.1E-05 50.6 1.1 30 449-478 52-81 (447)
497 3syl_A Protein CBBX; photosynt 83.2 0.59 2E-05 45.3 3.0 25 447-471 67-91 (309)
498 2chg_A Replication factor C sm 83.2 0.56 1.9E-05 42.3 2.7 22 450-471 41-62 (226)
499 1xx6_A Thymidine kinase; NESG, 83.1 0.57 1.9E-05 42.7 2.6 24 445-468 6-29 (191)
500 2vhj_A Ntpase P4, P4; non- hyd 83.1 0.72 2.5E-05 45.7 3.5 34 436-469 112-145 (331)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.79 E-value=1.7e-19 Score=183.98 Aligned_cols=93 Identities=22% Similarity=0.415 Sum_probs=79.1
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++||+|.|+++. +.+.||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 22 ~~mi~v~~ls~~y~~~~-----------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~ 90 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT-----------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ 90 (366)
T ss_dssp -CCEEEEEEEEEEECSS-----------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CceEEEEeEEEEeCCCC-----------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCE
Confidence 45799999999996431 1346999999999999999999999999999999999999999999999999
Q ss_pred ecCCc--ccHHHhhccEEEEccCCCc
Q 010435 484 SIRSS--VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~--~~~~~~r~~iG~cpQ~~~L 507 (510)
++... .+..+.|+.+||+||+..|
T Consensus 91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 91 ELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp ECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred ECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 98532 2344568899999998654
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.79 E-value=2.7e-19 Score=176.71 Aligned_cols=87 Identities=26% Similarity=0.430 Sum_probs=76.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||+|.|++. ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~l~i~~ls~~y~~~--------------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~ 71 (275)
T 3gfo_A 6 YILKVEELNYNYSDG--------------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71 (275)
T ss_dssp EEEEEEEEEEECTTS--------------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred cEEEEEEEEEEECCC--------------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE
Confidence 469999999999643 149999999999999999999999999999999999999999999999999
Q ss_pred cCC-cccHHHhhccEEEEccCC
Q 010435 485 IRS-SVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~-~~~~~~~r~~iG~cpQ~~ 505 (510)
+.. ..+..+.|+.+||+||+.
T Consensus 72 i~~~~~~~~~~~~~ig~v~Q~~ 93 (275)
T 3gfo_A 72 IDYSRKGIMKLRESIGIVFQDP 93 (275)
T ss_dssp CCCSHHHHHHHHHSEEEECSSG
T ss_pred CCcccccHHHHhCcEEEEEcCc
Confidence 841 233556789999999974
No 3
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=4.4e-19 Score=172.03 Aligned_cols=88 Identities=27% Similarity=0.490 Sum_probs=75.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
+.++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred ceEEEEeEEEEECCe---------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 468999999999542 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+......+..|+.+||+||+..+
T Consensus 70 ~~~~~~~~~~~~~i~~v~q~~~l 92 (240)
T 1ji0_A 70 ITNKPAHVINRMGIALVPEGRRI 92 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCC
T ss_pred CCCCCHHHHHhCCEEEEecCCcc
Confidence 85322222345679999998644
No 4
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.78 E-value=3e-19 Score=174.97 Aligned_cols=88 Identities=23% Similarity=0.314 Sum_probs=76.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~ 70 (257)
T 1g6h_A 6 EILRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD 70 (257)
T ss_dssp EEEEEEEEEEEETTE---------------EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred cEEEEeeeEEEECCE---------------eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 469999999999542 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+......+..|+.+||+||+..+
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~l 93 (257)
T 1g6h_A 71 ITNKEPAELYHYGIVRTFQTPQP 93 (257)
T ss_dssp CTTCCHHHHHHHTEEECCCCCGG
T ss_pred CCCCCHHHHHhCCEEEEccCCcc
Confidence 85322234467789999998643
No 5
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=4.4e-19 Score=173.57 Aligned_cols=87 Identities=28% Similarity=0.444 Sum_probs=77.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
-..++++||+|.|++. .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 13 ~~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 77 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK 77 (256)
T ss_dssp -CCEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CCeEEEEEEEEEECCE---------------EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 3579999999999532 5999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. ...+.|+.+||+||...+
T Consensus 78 ~~~~--~~~~~~~~i~~v~q~~~l 99 (256)
T 1vpl_A 78 NVVE--EPHEVRKLISYLPEEAGA 99 (256)
T ss_dssp ETTT--CHHHHHTTEEEECTTCCC
T ss_pred ECCc--cHHHHhhcEEEEcCCCCC
Confidence 9853 345678899999998654
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.78 E-value=4.3e-19 Score=174.20 Aligned_cols=87 Identities=23% Similarity=0.538 Sum_probs=76.3
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~~~---------------~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFGSL---------------EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEES
T ss_pred eEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 59999999999532 599999999999999999999999999999999999999999999999998
Q ss_pred C-CcccHHHhhccEEEEccCCCc
Q 010435 486 R-SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~-~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. +..+..+.|+.+||+||+..+
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l 111 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNL 111 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCC
T ss_pred CCccccHHHHhCcEEEEeCCCcC
Confidence 4 112345668889999998644
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.77 E-value=9.2e-19 Score=172.27 Aligned_cols=87 Identities=23% Similarity=0.366 Sum_probs=78.0
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||+|.|++. .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~---------------~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 74 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQ---------------ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74 (266)
T ss_dssp CEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE
T ss_pred ceEEEEeEEEEeCCe---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 479999999999642 69999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.. ...++.++.+||+||+..+
T Consensus 75 ~~~-~~~~~~~~~i~~v~q~~~~ 96 (266)
T 4g1u_C 75 LNS-WQPKALARTRAVMRQYSEL 96 (266)
T ss_dssp TTT-SCHHHHHHHEEEECSCCCC
T ss_pred CCc-CCHHHHhheEEEEecCCcc
Confidence 864 3456677889999997654
No 8
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.77 E-value=9.4e-19 Score=170.42 Aligned_cols=89 Identities=16% Similarity=0.294 Sum_probs=77.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||+|.|++. ...+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~~-------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-------------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESSTT-------------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CceeEEEEEEEeCCC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 358999999999421 1159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.. .+..++|+.+||+||...+
T Consensus 73 ~~~-~~~~~~~~~i~~v~Q~~~l 94 (247)
T 2ff7_A 73 LAL-ADPNWLRRQVGVVLQDNVL 94 (247)
T ss_dssp TTT-SCHHHHHHHEEEECSSCCC
T ss_pred hhh-CCHHHHHhcEEEEeCCCcc
Confidence 853 3455678899999998754
No 9
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.77 E-value=1.1e-18 Score=174.72 Aligned_cols=88 Identities=24% Similarity=0.415 Sum_probs=79.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||++.|++. ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~~~--------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYADG--------------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESSTT--------------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCCC--------------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 469999999999642 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.. .+.+++|+.+||+||+..|
T Consensus 118 i~~-~~~~~~r~~i~~v~Q~~~l 139 (306)
T 3nh6_A 118 ISQ-VTQASLRSHIGVVPQDTVL 139 (306)
T ss_dssp TTS-BCHHHHHHTEEEECSSCCC
T ss_pred ccc-CCHHHHhcceEEEecCCcc
Confidence 974 5677889999999998765
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.77 E-value=8.9e-19 Score=168.12 Aligned_cols=87 Identities=18% Similarity=0.394 Sum_probs=74.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~~~---------------~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIRGY---------------EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEEeEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 58999999999542 599999999999999999999999999999999999999999999999998
Q ss_pred CCcc--cHHHhh-ccEEEEccCCCc
Q 010435 486 RSSV--SMTNIQ-KSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~--~~~~~r-~~iG~cpQ~~~L 507 (510)
.... +..+.| +.+||+||+..+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred CCCCHHHHHHHHhCcEEEEecCccc
Confidence 5321 122344 789999998644
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.77 E-value=7.2e-19 Score=169.98 Aligned_cols=90 Identities=23% Similarity=0.392 Sum_probs=74.7
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++||+|.|++.. +...+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~~-----------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCC-----------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence 78999999996431 1236999999999999999999999999999999999999999999999999985
Q ss_pred Cccc--HHHh-hccEEEEccCCCc
Q 010435 487 SSVS--MTNI-QKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~--~~~~-r~~iG~cpQ~~~L 507 (510)
.... ..+. |+.+||+||++.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCC
T ss_pred cCCHHHHHHHhhccEEEEecCCcc
Confidence 3221 2222 4579999998754
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.77 E-value=8.1e-19 Score=172.38 Aligned_cols=87 Identities=17% Similarity=0.371 Sum_probs=75.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred eEEEeeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 59999999999532 599999999999999999999999999999999999999999999999998
Q ss_pred CC------------cccHHHhhccEEEEccCCCc
Q 010435 486 RS------------SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~------------~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ..+..+.|+.+||+||+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 104 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred cccccccccccccChhhHHHHhcceEEEecCccc
Confidence 41 01224567889999998644
No 13
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.76 E-value=2e-18 Score=170.41 Aligned_cols=90 Identities=22% Similarity=0.399 Sum_probs=77.6
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||++.|++.. ...+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 15 ~~l~~~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 82 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP------------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82 (271)
T ss_dssp CCEEEEEEEECCTTCT------------TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred ceEEEEEEEEEeCCCC------------CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 4699999999996410 1259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.. .+....|+.+||+||...+
T Consensus 83 i~~-~~~~~~~~~i~~v~Q~~~l 104 (271)
T 2ixe_A 83 LVQ-YDHHYLHTQVAAVGQEPLL 104 (271)
T ss_dssp GGG-BCHHHHHHHEEEECSSCCC
T ss_pred ccc-CCHHHHhccEEEEecCCcc
Confidence 852 3345678889999998754
No 14
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.76 E-value=8.5e-19 Score=178.69 Aligned_cols=87 Identities=24% Similarity=0.474 Sum_probs=75.7
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT---------------PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 58999999999542 699999999999999999999999999999999999999999999999998
Q ss_pred CC-cccHHHhhccEEEEccCCCc
Q 010435 486 RS-SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~-~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+ ..+....++.+||+||+..|
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l 91 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVL 91 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCC
T ss_pred cccccccchhhCCEEEEeCCCcC
Confidence 31 12233457889999998755
No 15
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=1.9e-18 Score=171.12 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=75.3
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 20 ~~l~~~~l~~~y~~~---------------~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGK---------------TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBC
T ss_pred ceEEEEeEEEEECCE---------------EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 469999999999542 59999999999999999999999999999999999999999999999998
Q ss_pred cC--CcccHHHhhccEEEEccCC
Q 010435 485 IR--SSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~--~~~~~~~~r~~iG~cpQ~~ 505 (510)
+. . .+..+.|+.+||+||+.
T Consensus 85 ~~~~~-~~~~~~~~~i~~v~Q~~ 106 (279)
T 2ihy_A 85 PGKVG-YSAETVRQHIGFVSHSL 106 (279)
T ss_dssp CC----CCHHHHHTTEEEECHHH
T ss_pred ccccc-CCHHHHcCcEEEEEcCc
Confidence 84 2 23456788999999974
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.75 E-value=1.4e-18 Score=178.21 Aligned_cols=84 Identities=21% Similarity=0.440 Sum_probs=74.8
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .||+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~yg~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEeEEEEECCE---------------EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 48999999999542 699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. ....++.+||+||+..|
T Consensus 68 ~~---~~~~~r~ig~VfQ~~~l 86 (381)
T 3rlf_A 68 ND---TPPAERGVGMVFQSYAL 86 (381)
T ss_dssp TT---CCGGGSCEEEECTTCCC
T ss_pred CC---CCHHHCCEEEEecCCcC
Confidence 53 22345789999998765
No 17
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.75 E-value=1.2e-18 Score=169.23 Aligned_cols=86 Identities=22% Similarity=0.381 Sum_probs=74.8
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++. ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~--------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYDDS--------------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSSSS--------------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEEST
T ss_pred EEEEEEEEEeCCC--------------CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 6899999999422 15999999999999999999999999999999999999999999999999985
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. .+..+.|+.+||+||+..+
T Consensus 68 ~-~~~~~~~~~i~~v~q~~~l 87 (243)
T 1mv5_A 68 N-ISLENWRSQIGFVSQDSAI 87 (243)
T ss_dssp T-TSCSCCTTTCCEECCSSCC
T ss_pred h-CCHHHHHhhEEEEcCCCcc
Confidence 3 2234567889999998754
No 18
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.74 E-value=4.5e-18 Score=161.88 Aligned_cols=82 Identities=22% Similarity=0.384 Sum_probs=73.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++|++|.|++ .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 8 ~~~l~~~~ls~~y~~----------------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 71 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK----------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 71 (214)
T ss_dssp -CEEEEEEEEEESSS----------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CceEEEEEEEEEeCC----------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 457999999999942 4999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++. ..|+.+||+||...+
T Consensus 72 ~~~------~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 72 PIT------KVKGKIFFLPEEIIV 89 (214)
T ss_dssp EGG------GGGGGEEEECSSCCC
T ss_pred Ehh------hhcCcEEEEeCCCcC
Confidence 872 357889999997644
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.74 E-value=3e-18 Score=174.61 Aligned_cols=86 Identities=26% Similarity=0.522 Sum_probs=75.8
Q ss_pred CceEEEeeeEEEc-CCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 404 NVAVQIRGLVKTF-PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 404 ~~~i~~~~l~k~y-~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
...++++||+|.| ++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 12 ~~~l~~~~l~~~y~g~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 76 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGA---------------RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76 (355)
T ss_dssp CEEEEEEEEEECCTTST---------------TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred CceEEEEEEEEEEcCCC---------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 4579999999999 432 599999999999999999999999999999999999999999999999
Q ss_pred eecCCcccHHHhhccEEEEccCCCc
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++.. ....++.+||+||+..|
T Consensus 77 ~~i~~---~~~~~r~ig~v~Q~~~l 98 (355)
T 1z47_A 77 KRVTD---LPPQKRNVGLVFQNYAL 98 (355)
T ss_dssp EECTT---CCGGGSSEEEECGGGCC
T ss_pred EECCc---CChhhCcEEEEecCccc
Confidence 99853 22447889999997654
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.74 E-value=3.1e-18 Score=174.91 Aligned_cols=84 Identities=26% Similarity=0.432 Sum_probs=74.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (359)
T 2yyz_A 3 SIRVVNLKKYFGKV---------------KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV 67 (359)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC
Confidence 48999999999532 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
... ...++.+||+||+..|
T Consensus 68 ~~~---~~~~r~ig~v~Q~~~l 86 (359)
T 2yyz_A 68 NDI---PPKYREVGMVFQNYAL 86 (359)
T ss_dssp TTS---CGGGTTEEEECSSCCC
T ss_pred CCC---ChhhCcEEEEecCccc
Confidence 531 2336789999998754
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.73 E-value=4.8e-18 Score=173.69 Aligned_cols=84 Identities=23% Similarity=0.416 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (362)
T 2it1_A 3 EIKLENIVKKFGNF---------------TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV 67 (362)
T ss_dssp CEEEEEEEEESSSS---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEEeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 48999999999532 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+. ...++.+||+||+..|
T Consensus 68 ~~~---~~~~r~ig~v~Q~~~l 86 (362)
T 2it1_A 68 TEL---PPKDRNVGLVFQNWAL 86 (362)
T ss_dssp TTS---CGGGTTEEEECTTCCC
T ss_pred CcC---CHhHCcEEEEecCccc
Confidence 531 2335789999998754
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.73 E-value=7e-18 Score=166.08 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=73.4
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|+... ...+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT----------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK 71 (266)
T ss_dssp CEEEEEEEEEESTTS----------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEEEEEEEecCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 378999999996210 0002699999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCC
Q 010435 486 RSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.. . +.|+.+||+||+.
T Consensus 72 ~~---~-~~~~~i~~v~q~~ 87 (266)
T 2yz2_A 72 KG---Y-EIRRNIGIAFQYP 87 (266)
T ss_dssp CH---H-HHGGGEEEECSSG
T ss_pred ch---H-HhhhhEEEEeccc
Confidence 42 2 6688999999974
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.73 E-value=5.2e-18 Score=167.04 Aligned_cols=88 Identities=23% Similarity=0.344 Sum_probs=73.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--ccCCcceEEEcC
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYG 482 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--~~pt~G~i~i~g 482 (510)
..++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+ .+|++|+|.++|
T Consensus 19 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDK---------------AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp -CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred ceEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 469999999999532 599999999999999999999999999999999999 579999999999
Q ss_pred eecCCcccHHHhhccEEEEccCCCc
Q 010435 483 FSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 483 ~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++.........++.+||+||+..+
T Consensus 84 ~~i~~~~~~~~~~~~i~~v~Q~~~l 108 (267)
T 2zu0_C 84 KDLLALSPEDRAGEGIFMAFQYPVE 108 (267)
T ss_dssp EEGGGSCHHHHHHHTEEEECSSCCC
T ss_pred EECCcCCHHHHhhCCEEEEccCccc
Confidence 9984211122235569999998643
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.73 E-value=5.9e-18 Score=173.88 Aligned_cols=87 Identities=22% Similarity=0.369 Sum_probs=74.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEEC
Confidence 48999999999532 599999999999999999999999999999999999999999999999997
Q ss_pred CCcc---cHHHhhccEEEEccCCCc
Q 010435 486 RSSV---SMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~---~~~~~r~~iG~cpQ~~~L 507 (510)
.+.. .....++++||+||+..|
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCC
T ss_pred ccccccccCCHhHCCEEEEeCCCcc
Confidence 3200 022346789999998754
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.73 E-value=5.4e-18 Score=173.94 Aligned_cols=84 Identities=26% Similarity=0.414 Sum_probs=71.7
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 11 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred eEEEEEEEEEECCE---------------EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 48999999999532 599999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+ ....++.+||+||+..|
T Consensus 76 ~~---~~~~~r~ig~v~Q~~~l 94 (372)
T 1v43_A 76 TY---LPPKDRNISMVFQSYAV 94 (372)
T ss_dssp TT---SCGGGGTEEEEEC----
T ss_pred CC---CChhhCcEEEEecCccc
Confidence 53 12336789999998654
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.73 E-value=4.9e-18 Score=165.70 Aligned_cols=87 Identities=29% Similarity=0.394 Sum_probs=73.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--ccCCcceEEEcCe
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGF 483 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--~~pt~G~i~i~g~ 483 (510)
.++++||+|.|++. .+++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~ 67 (250)
T 2d2e_A 3 QLEIRDLWASIDGE---------------TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE 67 (250)
T ss_dssp EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTE
T ss_pred eEEEEeEEEEECCE---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE
Confidence 48999999999532 599999999999999999999999999999999998 8999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++......+..|+.+||+||...+
T Consensus 68 ~~~~~~~~~~~~~~i~~v~q~~~~ 91 (250)
T 2d2e_A 68 NILELSPDERARKGLFLAFQYPVE 91 (250)
T ss_dssp ECTTSCHHHHHHTTBCCCCCCCC-
T ss_pred ECCCCCHHHHHhCcEEEeccCCcc
Confidence 985322222335679999998654
No 27
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.72 E-value=3.7e-18 Score=174.26 Aligned_cols=87 Identities=24% Similarity=0.413 Sum_probs=74.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcc--eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYH--AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~--av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
.++++||+|.|++. . +++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 3 ~l~i~~l~~~y~~~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 67 (353)
T 1oxx_K 3 RIIVKNVSKVFKKG---------------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67 (353)
T ss_dssp CEEEEEEEEEEGGG---------------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEeEEEEECCE---------------eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 48899999999532 5 999999999999999999999999999999999999999999999999
Q ss_pred ecCCc--ccHHHhhccEEEEccCCCc
Q 010435 484 SIRSS--VSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~--~~~~~~r~~iG~cpQ~~~L 507 (510)
++.+. .+....++++||+||+..|
T Consensus 68 ~i~~~~~~~~~~~~r~ig~v~Q~~~l 93 (353)
T 1oxx_K 68 LVASNGKLIVPPEDRKIGMVFQTWAL 93 (353)
T ss_dssp EEEETTEESSCGGGSCEEEEETTSCC
T ss_pred ECcccccccCChhhCCEEEEeCCCcc
Confidence 98320 0133457889999998754
No 28
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.72 E-value=1.5e-17 Score=163.22 Aligned_cols=88 Identities=23% Similarity=0.362 Sum_probs=76.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||++.|++.. .+.+++|+||++++||+++|+||||||||||+++|+|+++| +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQT------------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTCC------------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCCC------------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEh
Confidence 599999999996421 12599999999999999999999999999999999999987 89999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+..++|+.+||+||...+
T Consensus 84 ~~-~~~~~~~~~i~~v~Q~~~l 104 (260)
T 2ghi_A 84 NK-YNRNSIRSIIGIVPQDTIL 104 (260)
T ss_dssp GG-BCHHHHHTTEEEECSSCCC
T ss_pred hh-cCHHHHhccEEEEcCCCcc
Confidence 52 3455678899999998754
No 29
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=171.95 Aligned_cols=89 Identities=25% Similarity=0.403 Sum_probs=78.1
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++||+|.|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.
T Consensus 17 ~~~i~~~~l~~~y~~~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~ 82 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-------------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGV 82 (390)
T ss_dssp SCCEEEEEEEEESSSS-------------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSC
T ss_pred CCeEEEEEEEEEecCC-------------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCE
Confidence 3469999999999532 1269999999999999999999999999999999999998 9999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++.. ...++.|+.+||+||+..|
T Consensus 83 ~i~~-~~~~~~rr~ig~v~Q~~~l 105 (390)
T 3gd7_A 83 SWDS-ITLEQWRKAFGVIPQKVFI 105 (390)
T ss_dssp BTTS-SCHHHHHHTEEEESCCCCC
T ss_pred ECCc-CChHHHhCCEEEEcCCccc
Confidence 9863 4556778999999998765
No 30
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.72 E-value=8.5e-18 Score=171.11 Aligned_cols=82 Identities=22% Similarity=0.457 Sum_probs=73.1
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++||+|.|++ + +++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~---------------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWKN---------------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECSS---------------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEECC---------------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 689999999942 2 899999999999999999999999999999999999999999999999985
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+ ....++.+||+||+..|
T Consensus 66 ~---~~~~~r~ig~v~Q~~~l 83 (348)
T 3d31_A 66 D---LSPEKHDIAFVYQNYSL 83 (348)
T ss_dssp T---SCHHHHTCEEECTTCCC
T ss_pred C---CchhhCcEEEEecCccc
Confidence 3 23457789999998754
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.70 E-value=1.4e-17 Score=161.45 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=70.6
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++||+|.|++ +++|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~-----------------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLGN-----------------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEETT-----------------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEeCC-----------------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 578999999931 59999999999 999999999999999999999999999999999999984
Q ss_pred CcccHHHhhccEEEEccCCCc
Q 010435 487 SSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG~cpQ~~~L 507 (510)
. ....|+.+||+||+..+
T Consensus 64 ~---~~~~~~~i~~v~q~~~l 81 (240)
T 2onk_A 64 P---LPPERRGIGFVPQDYAL 81 (240)
T ss_dssp T---SCTTTSCCBCCCSSCCC
T ss_pred c---CchhhCcEEEEcCCCcc
Confidence 3 22457789999998644
No 32
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.69 E-value=4.7e-17 Score=177.32 Aligned_cols=90 Identities=22% Similarity=0.382 Sum_probs=80.4
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...++++|+++.|++.. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.
T Consensus 337 ~~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNE-------------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCSSS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence 34699999999996531 25999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+++ .+.++.|+++|||||++.|
T Consensus 404 ~~~~-~~~~~~r~~i~~v~Q~~~l 426 (578)
T 4a82_A 404 NIKD-FLTGSLRNQIGLVQQDNIL 426 (578)
T ss_dssp EGGG-SCHHHHHHTEEEECSSCCC
T ss_pred Ehhh-CCHHHHhhheEEEeCCCcc
Confidence 9963 4677889999999998765
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.68 E-value=7.9e-17 Score=155.05 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=67.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|++|.|++. .+.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-- 69 (229)
T ss_dssp EEEEEEEEEECSSTT-------------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--
T ss_pred ceEEEEEEEEEeCCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--
Confidence 469999999999632 12599999999999999999999999999999999999999999999987
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+||+||...+
T Consensus 70 ------------~i~~v~q~~~~ 80 (229)
T 2pze_A 70 ------------RISFCSQFSWI 80 (229)
T ss_dssp ------------CEEEECSSCCC
T ss_pred ------------EEEEEecCCcc
Confidence 38999998654
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.68 E-value=6.3e-17 Score=157.54 Aligned_cols=81 Identities=22% Similarity=0.348 Sum_probs=71.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++||+|. .+++|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++
T Consensus 4 ~l~~~~l~~~-------------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAES-------------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEET-------------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEG
T ss_pred EEEEEceEEE-------------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEEC
Confidence 5788898865 1899999999999999999999999999999999999999 9999999998
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.. .+..+.|+.+||+||+..+
T Consensus 64 ~~-~~~~~~~~~i~~v~q~~~~ 84 (249)
T 2qi9_C 64 EA-WSATKLALHRAYLSQQQTP 84 (249)
T ss_dssp GG-SCHHHHHHHEEEECSCCCC
T ss_pred Cc-CCHHHHhceEEEECCCCcc
Confidence 42 3455678889999998654
No 35
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=7.1e-17 Score=176.08 Aligned_cols=90 Identities=18% Similarity=0.349 Sum_probs=80.6
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++|+++.|++.. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENT-------------DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS
T ss_pred CCcEEEEEEEEEcCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE
Confidence 34699999999996431 25999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+++ .+.++.|+++||+||++.|
T Consensus 406 ~i~~-~~~~~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 406 DVRT-VKLKDLRGHISAVPQETVL 428 (587)
T ss_dssp BGGG-BCHHHHHHHEEEECSSCCC
T ss_pred Eccc-CCHHHHHhheEEECCCCcC
Confidence 9963 5677889999999998765
No 36
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=2.8e-17 Score=179.74 Aligned_cols=88 Identities=26% Similarity=0.453 Sum_probs=79.7
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++ ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus 353 ~~i~~~~v~~~y~~~--------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK--------------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSSSS--------------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CeEEEEEEEEECCCC--------------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE
Confidence 469999999999642 159999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.++.|+++||+||++.|
T Consensus 419 i~~-~~~~~~r~~i~~v~Q~~~l 440 (598)
T 3qf4_B 419 IRK-IKRSSLRSSIGIVLQDTIL 440 (598)
T ss_dssp GGG-SCHHHHHHHEEEECTTCCC
T ss_pred hhh-CCHHHHHhceEEEeCCCcc
Confidence 963 4677889999999998765
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.67 E-value=7.5e-17 Score=156.00 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=67.2
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++++|++|.|++.. ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~-------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSD-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--- 66 (237)
T ss_dssp CEEEEEEEEESCTTS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---
T ss_pred eEEEEEEEEEeCCCC-------------CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---
Confidence 489999999996321 1599999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhccEEEEccCCCc
Q 010435 486 RSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 486 ~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.+||+||...+
T Consensus 67 -----------~i~~v~Q~~~~ 77 (237)
T 2cbz_A 67 -----------SVAYVPQQAWI 77 (237)
T ss_dssp -----------CEEEECSSCCC
T ss_pred -----------EEEEEcCCCcC
Confidence 38999998754
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.67 E-value=4.4e-17 Score=159.87 Aligned_cols=84 Identities=23% Similarity=0.437 Sum_probs=71.5
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++|++|.|++.. .++.+++++||+++ ||+++|+||||||||||+++|+|+. |++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~~-----------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-----------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEET-----------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCC-----------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECc
Confidence 68999999995310 01269999999999 9999999999999999999999999 99999999999984
Q ss_pred CcccHHHhhccEE-EEccCCCc
Q 010435 487 SSVSMTNIQKSIG-VCPQVTLF 507 (510)
Q Consensus 487 ~~~~~~~~r~~iG-~cpQ~~~L 507 (510)
. . .. |+.+| |+||+..+
T Consensus 69 ~--~-~~-~~~i~~~v~Q~~~l 86 (263)
T 2pjz_A 69 K--I-RN-YIRYSTNLPEAYEI 86 (263)
T ss_dssp G--C-SC-CTTEEECCGGGSCT
T ss_pred c--h-HH-hhheEEEeCCCCcc
Confidence 2 2 23 77899 99998755
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.67 E-value=1.4e-16 Score=173.69 Aligned_cols=89 Identities=21% Similarity=0.444 Sum_probs=79.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++. +.+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~~~-------------~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPGRE-------------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCCCC-------------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence 4699999999996421 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.++.|+++||+||++.|
T Consensus 407 ~~~-~~~~~~~~~i~~v~Q~~~l 428 (582)
T 3b60_A 407 LRE-YTLASLRNQVALVSQNVHL 428 (582)
T ss_dssp TTT-BCHHHHHHTEEEECSSCCC
T ss_pred ccc-cCHHHHHhhCeEEccCCcC
Confidence 964 4567789999999998755
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.66 E-value=1.5e-16 Score=173.95 Aligned_cols=90 Identities=20% Similarity=0.392 Sum_probs=79.5
Q ss_pred ce-EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 405 VA-VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 405 ~~-i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
.. ++++|+++.|+++. +..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~~~------------~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 406 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARP------------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGH 406 (595)
T ss_dssp CCCEEEEEEEEECSSCT------------TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTE
T ss_pred CCeEEEEEEEEEeCCCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCE
Confidence 35 99999999996431 125999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++++ .+.+++|+++||+||+..|
T Consensus 407 ~i~~-~~~~~~~~~i~~v~Q~~~l 429 (595)
T 2yl4_A 407 DIRQ-LNPVWLRSKIGTVSQEPIL 429 (595)
T ss_dssp ETTT-BCHHHHHHSEEEECSSCCC
T ss_pred Ehhh-CCHHHHHhceEEEccCCcc
Confidence 9964 4567789999999998755
No 41
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.66 E-value=1.4e-16 Score=173.73 Aligned_cols=89 Identities=21% Similarity=0.390 Sum_probs=79.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus 340 ~~i~~~~v~~~y~~~~-------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKE-------------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 4699999999996421 259999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.++.|+++||+||++.|
T Consensus 407 ~~~-~~~~~~~~~i~~v~Q~~~l 428 (582)
T 3b5x_A 407 VRD-YKLTNLRRHFALVSQNVHL 428 (582)
T ss_pred hhh-CCHHHHhcCeEEEcCCCcc
Confidence 863 4567789999999998754
No 42
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.66 E-value=1.9e-16 Score=154.55 Aligned_cols=73 Identities=27% Similarity=0.421 Sum_probs=65.9
Q ss_pred eEEEeeeEEEcC-CCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 406 AVQIRGLVKTFP-GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 406 ~i~~~~l~k~y~-~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
.++++||+|.|+ +. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~i~~l~~~y~~~~---------------~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQAEN---------------FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----- 63 (253)
T ss_dssp EEEEEEEEEEETTTT---------------EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----
T ss_pred eEEEeeEEEEeCCCC---------------eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----
Confidence 589999999996 32 599999999999999999999999999999999999999999998
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++.+||+||+..+
T Consensus 64 ---------~~~~i~~v~q~~~~ 77 (253)
T 2nq2_C 64 ---------VYQSIGFVPQFFSS 77 (253)
T ss_dssp ---------ECSCEEEECSCCCC
T ss_pred ---------EeccEEEEcCCCcc
Confidence 24579999998654
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.62 E-value=7.4e-16 Score=181.99 Aligned_cols=91 Identities=23% Similarity=0.422 Sum_probs=82.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
...|+++||++.|+++. +.++|+|+||+|++||.+||+|+|||||||++++|.|+++|++|+|.|||.
T Consensus 1074 ~g~I~f~nVsf~Y~~~~------------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERP------------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS 1141 (1321)
T ss_dssp CCCEEEEEEEECCTTSC------------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTE
T ss_pred CCeEEEEEEEEeCCCCC------------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCE
Confidence 34699999999997542 336999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+++ .+.+.+|+++|+|||++.|
T Consensus 1142 di~~-i~~~~lR~~i~~V~Qdp~L 1164 (1321)
T 4f4c_A 1142 EIKT-LNPEHTRSQIAIVSQEPTL 1164 (1321)
T ss_dssp ETTT-BCHHHHHTTEEEECSSCCC
T ss_pred Ehhh-CCHHHHHhheEEECCCCEe
Confidence 9974 6789999999999999876
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.59 E-value=1.9e-15 Score=177.98 Aligned_cols=91 Identities=23% Similarity=0.439 Sum_probs=81.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++|+++.|+++. +.++++|+||++++||++||+|||||||||++++|.|+++|++|+|.++|.
T Consensus 385 ~g~i~~~~v~~~y~~~~------------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~ 452 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRK------------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452 (1284)
T ss_dssp CCCEEEEEEEECCSSTT------------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCCC------------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 34699999999997531 236999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+++ .+.+.+|+++|||||++.|
T Consensus 453 ~i~~-~~~~~~r~~i~~v~Q~~~l 475 (1284)
T 3g5u_A 453 DIRT-INVRYLREIIGVVSQEPVL 475 (1284)
T ss_dssp EGGG-SCHHHHHHHEEEECSSCCC
T ss_pred EHHh-CCHHHHHhheEEEcCCCcc
Confidence 9963 5678899999999999865
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.57 E-value=4.6e-15 Score=175.23 Aligned_cols=91 Identities=23% Similarity=0.405 Sum_probs=82.8
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..|+++|+++.|+++. ++.+++|+||++++||.++|+||+||||||++++|.|+++|++|+|.++|.
T Consensus 413 ~g~I~~~nvsF~Y~~~~------------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRP------------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSST------------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CCcEEEEEeeeeCCCCC------------CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 34699999999997542 336999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHhhccEEEEccCCCc
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
|+++ .+.+.+|+++|||||++.|
T Consensus 481 ~i~~-~~~~~lr~~i~~v~Q~~~L 503 (1321)
T 4f4c_A 481 DVRD-INLEFLRKNVAVVSQEPAL 503 (1321)
T ss_dssp ETTT-SCHHHHHHHEEEECSSCCC
T ss_pred cchh-ccHHHHhhcccccCCccee
Confidence 9984 6788999999999999876
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.56 E-value=2.3e-15 Score=149.61 Aligned_cols=72 Identities=24% Similarity=0.353 Sum_probs=55.9
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.+ . .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 39 ~~l~~~~l~~~~--~---------------~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG--T---------------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-- 99 (290)
T ss_dssp -----------C--C---------------CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--
T ss_pred ceEEEEEEEEcC--c---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--
Confidence 458999998753 1 489999999999999999999999999999999999999999999987
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++||+||...+
T Consensus 100 ------------~i~~v~Q~~~l 110 (290)
T 2bbs_A 100 ------------RISFCSQNSWI 110 (290)
T ss_dssp ------------CEEEECSSCCC
T ss_pred ------------EEEEEeCCCcc
Confidence 38999998654
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.55 E-value=4.2e-15 Score=175.11 Aligned_cols=90 Identities=23% Similarity=0.462 Sum_probs=80.8
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|+++. +.++++|+||++++||++||+|+|||||||++++|.|+++|++|+|.++|.|
T Consensus 1029 g~i~~~~v~~~y~~~~------------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP------------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCGG------------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSC
T ss_pred CcEEEEEEEEECCCCC------------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence 4699999999996531 2258999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHhhccEEEEccCCCc
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+++ .+.+.+|+++||+||+..|
T Consensus 1097 i~~-~~~~~~r~~i~~v~Q~~~l 1118 (1284)
T 3g5u_A 1097 IKQ-LNVQWLRAQLGIVSQEPIL 1118 (1284)
T ss_dssp TTS-SCHHHHTTSCEEEESSCCC
T ss_pred ccc-CCHHHHHhceEEECCCCcc
Confidence 974 5678899999999998865
No 48
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.40 E-value=2.7e-13 Score=153.27 Aligned_cols=76 Identities=28% Similarity=0.374 Sum_probs=66.0
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++++|+++.|++.. +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.
T Consensus 670 ~mL~v~nLs~~Y~g~~-------------~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTS-------------KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN- 735 (986)
T ss_dssp EEEEEEEEEECCTTCS-------------SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-
T ss_pred ceEEEEeeEEEeCCCC-------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-
Confidence 4699999999996421 15899999999999999999999999999999999999999999999752
Q ss_pred cCCcccHHHhhccEEEEccCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.++||++|+.
T Consensus 736 -----------~~I~yv~Q~~ 745 (986)
T 2iw3_A 736 -----------CRIAYIKQHA 745 (986)
T ss_dssp -----------CCEEEECHHH
T ss_pred -----------cceEeeccch
Confidence 1478888863
No 49
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.39 E-value=2.1e-15 Score=136.56 Aligned_cols=65 Identities=23% Similarity=0.103 Sum_probs=55.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
.|++++||++++||+++|+|||||||||++++|+|++ |++|+|.++|.++.. . .+.+ ++++||..
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~--~-~~~~---~~~~q~~~ 85 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE--E-YNIA---GKMIYHFD 85 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE--E-EEET---TEEEEEEE
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee--e-ccCC---Ccceeccc
Confidence 6999999999999999999999999999999999999 999999999988731 1 1112 27888753
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.31 E-value=2e-12 Score=140.85 Aligned_cols=73 Identities=27% Similarity=0.375 Sum_probs=64.6
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..+++++++|.|++ ..+++++|++++||++||+||||||||||+++|+|+.+|++|+|.+
T Consensus 355 ~~~l~~~~l~~~~~~----------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--- 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS----------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--- 415 (607)
T ss_dssp CEEEEECCEEEECSS----------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---
T ss_pred ceEEEEeceEEEecc----------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---
Confidence 357999999999953 3689999999999999999999999999999999999999999876
Q ss_pred ecCCcccHHHhhccEEEEccCCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
++.+||+||+..
T Consensus 416 -----------~~~i~~v~Q~~~ 427 (607)
T 3bk7_A 416 -----------DLTVAYKPQYIK 427 (607)
T ss_dssp -----------CCCEEEECSSCC
T ss_pred -----------eeEEEEEecCcc
Confidence 136999999754
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.29 E-value=2.7e-12 Score=138.32 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=64.5
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..++++++++.|++ ..+++++|++++||++||+|+||||||||+++|+|+.+|++|+|.+
T Consensus 285 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--- 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS----------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--- 345 (538)
T ss_dssp CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---
T ss_pred CeEEEEeeEEEEECC----------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---
Confidence 457999999999943 3689999999999999999999999999999999999999999875
Q ss_pred ecCCcccHHHhhccEEEEccCCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+..+||+||+..
T Consensus 346 -----------~~~i~~v~Q~~~ 357 (538)
T 1yqt_A 346 -----------DLTVAYKPQYIK 357 (538)
T ss_dssp -----------CCCEEEECSSCC
T ss_pred -----------CceEEEEecCCc
Confidence 135999999754
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.27 E-value=5.2e-12 Score=135.82 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=63.7
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+..+++++++|.|++ ..++..||++++||++||+||||||||||+++|+|+.+|++|+|.++|
T Consensus 267 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~- 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD----------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK- 329 (538)
T ss_dssp CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-
T ss_pred cceEEEcceEEEECC----------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-
Confidence 457899999999953 367888999999999999999999999999999999999999998754
Q ss_pred ecCCcccHHHhhccEEEEccCC
Q 010435 484 SIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 ~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
+.+|++||..
T Consensus 330 ------------~~i~~~~q~~ 339 (538)
T 3ozx_A 330 ------------QILSYKPQRI 339 (538)
T ss_dssp ------------CCEEEECSSC
T ss_pred ------------eeeEeechhc
Confidence 2478888864
No 53
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.25 E-value=6.8e-13 Score=126.43 Aligned_cols=67 Identities=13% Similarity=0.015 Sum_probs=45.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
..++|+||++++|++++|+||||||||||+++|+|++ | |++.+ |.++.+.......++.+||++|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~ 77 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDK 77 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCH
Confidence 4799999999999999999999999999999999999 5 99999 877632111123467899999864
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.22 E-value=1.8e-12 Score=139.70 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=61.5
Q ss_pred EEE-eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE-------
Q 010435 407 VQI-RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA------- 478 (510)
Q Consensus 407 i~~-~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i------- 478 (510)
.++ +||+|.|++. ..+++++| ++++||++||+|+||||||||+++|+|+++|++|++
T Consensus 21 ~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~ 85 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--------------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV 85 (538)
T ss_dssp ---CCCEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHH
T ss_pred hhHhcCcEEEECCc--------------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 454 5899999542 14899999 999999999999999999999999999999999995
Q ss_pred --EEcCeecCCc-ccHHHhhccEEEEccCC
Q 010435 479 --LIYGFSIRSS-VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 479 --~i~g~~i~~~-~~~~~~r~~iG~cpQ~~ 505 (510)
.++|.++... ......+..+|+++|..
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~ 115 (538)
T 1yqt_A 86 IRAFRGNELQNYFEKLKNGEIRPVVKPQYV 115 (538)
T ss_dssp HHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred HHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence 3456544210 00111234688999863
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.22 E-value=2e-12 Score=140.86 Aligned_cols=84 Identities=23% Similarity=0.259 Sum_probs=64.2
Q ss_pred eEEE--------eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435 406 AVQI--------RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (510)
Q Consensus 406 ~i~~--------~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~ 477 (510)
++++ +||+|.|++. ..+++++| .+++||++||+||||||||||+++|+|+++|++|+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--------------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred eEEEecCCccccCCeEEEECCC--------------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 4778 8889999542 13899999 99999999999999999999999999999999999
Q ss_pred E---------EEcCeecCCc-ccHHHhhccEEEEccC
Q 010435 478 A---------LIYGFSIRSS-VSMTNIQKSIGVCPQV 504 (510)
Q Consensus 478 i---------~i~g~~i~~~-~~~~~~r~~iG~cpQ~ 504 (510)
+ .++|.++... ......+..+++++|.
T Consensus 148 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 148 DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp TCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred cccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 5 3456554210 0011123568899986
No 56
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.21 E-value=1.3e-12 Score=136.98 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=71.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe-
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF- 483 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~- 483 (510)
..++++++++.|+.. .+|++++ |.+.+||+++|+|+||||||||+++|+|+.+|+.|.+.++|.
T Consensus 130 ~~l~~~~v~~~~~tg--------------~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r 194 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--------------VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGER 194 (438)
T ss_dssp CTTTSCCCCSBCCCS--------------CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CceEEeccceecCCC--------------ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEecee
Confidence 457888999999532 2599999 999999999999999999999999999999999999999998
Q ss_pred --ecCCc----ccHHHhhccEEEEccCC
Q 010435 484 --SIRSS----VSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 484 --~i~~~----~~~~~~r~~iG~cpQ~~ 505 (510)
++... .+....++.+++++|.+
T Consensus 195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~ 222 (438)
T 2dpy_A 195 GREVKDFIENILGPDGRARSVVIAAPAD 222 (438)
T ss_dssp HHHHHHHHHTTTHHHHHHTEEEEEECTT
T ss_pred cHHHHHHHHhhccccccCceEEEEECCC
Confidence 44210 01234678899999964
No 57
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.18 E-value=5.9e-13 Score=125.95 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=49.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.+++++ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++. ....+.++.+||+||..
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~--~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT--RPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE--ECSCCTTCCCCSSCC--
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec--CCchhhhcceEEecCCH
Confidence 689996 89999999999999999999999999 99999994 33331 11124578899999964
No 58
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.15 E-value=7.8e-12 Score=124.96 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=58.5
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHHh--hccEEEEccCCC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQVTL 506 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~~--r~~iG~cpQ~~~ 506 (510)
++++++|++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... +...+ |+.+++++|...
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~ 164 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 164 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence 457889999999999999999999999999999999999999999999874311 12233 457999999764
No 59
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.14 E-value=7.8e-12 Score=127.32 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=69.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..++.++++|.|+.. ++|++++ |.+.+||++||+|+||||||||+++|+|+.+|+.|.+.+.|.+
T Consensus 44 ~~i~~~~l~~~~~tg--------------~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--------------VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEECCS--------------CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CCeeecccceecCCC--------------CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 457889999999632 2599999 9999999999999999999999999999999999999999865
Q ss_pred cCCcc------cHHHhhccEEEEccCC
Q 010435 485 IRSSV------SMTNIQKSIGVCPQVT 505 (510)
Q Consensus 485 i~~~~------~~~~~r~~iG~cpQ~~ 505 (510)
.+... .....++.+++++|.+
T Consensus 109 ~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 109 GREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp HHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred HHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 21000 1123456789999875
No 60
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.10 E-value=5.7e-12 Score=135.65 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=61.4
Q ss_pred ceeeeeeE-EEeCCcEEEEecCCCCchhHHHHH--HcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISC--LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl-~v~~gei~~llG~nGaGKsTl~~~--l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.+|+++++ ++++||+++|+|+||||||||+++ ++|+.+|++|.++++|.+. ..+..+.++.+|+++|+.
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~--~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET--PQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--HHHHHHHHGGGTCCHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCCChHHh
Confidence 69999999 999999999999999999999999 7899999999999999874 334556677899999963
No 61
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.07 E-value=8.9e-13 Score=133.96 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=70.2
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++++++++.|++ ..+++++++++++|++++|+|+||||||||+++|+|+++|++|++.+.|.++.
T Consensus 30 ie~~~~~~~~~~---------------~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 30 AESRRADHRAAV---------------RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp HTCSSHHHHHHH---------------HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred HeeCCcccccCh---------------HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 566778888842 15899999999999999999999999999999999999999999999999873
Q ss_pred Ccc---cHHHhhccEEEEccCCC
Q 010435 487 SSV---SMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 487 ~~~---~~~~~r~~iG~cpQ~~~ 506 (510)
... .....|+++|+++|...
T Consensus 95 ~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 95 STRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp GGSSCCCSSCCGGGSTTGGGCTT
T ss_pred ccccccchHHHhhhheeeccCcc
Confidence 211 12345778999999754
No 62
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.05 E-value=1.3e-11 Score=128.19 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=53.5
Q ss_pred ceeeeeeEEEeCCc--------------------EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHh
Q 010435 435 HAIKGLWVNIAKDQ--------------------LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494 (510)
Q Consensus 435 ~av~~lsl~v~~ge--------------------i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~ 494 (510)
.+++++||++++|| ++||+|+||||||||+|+|+|+.+|++|+|.++|.++.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------- 108 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------- 108 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------------
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc--------
Confidence 69999999999999 99999999999999999999999999999999987641
Q ss_pred hccEEEEccCCC
Q 010435 495 QKSIGVCPQVTL 506 (510)
Q Consensus 495 r~~iG~cpQ~~~ 506 (510)
|+ |+++|++.
T Consensus 109 ~~--~~v~q~~~ 118 (413)
T 1tq4_A 109 ME--RHPYKHPN 118 (413)
T ss_dssp CC--CEEEECSS
T ss_pred ee--EEeccccc
Confidence 22 78888754
No 63
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.05 E-value=4.4e-11 Score=121.98 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=58.2
Q ss_pred eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHHh--hccEEEEccCCC
Q 010435 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQVTL 506 (510)
Q Consensus 438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~~--r~~iG~cpQ~~~ 506 (510)
++++|++++|++++|+|+||||||||++.|+|+++|++|+|.+.|.|+.... +...+ |+.+++++|...
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~ 221 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 221 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc
Confidence 5788999999999999999999999999999999999999999999984311 12222 567999999764
No 64
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.02 E-value=5.1e-11 Score=125.67 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=49.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
.+++++||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 589999999999 999999999999999999999999999999999998874
No 65
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.00 E-value=6.2e-11 Score=114.70 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=38.5
Q ss_pred cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.+++|+||++++|+++||+|+|||||||++++|+|++ |.+.++ ..++.+++++|.+..
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~~~~~i~~v~~d~~~ 70 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------QRQRKVVILSQDRFY 70 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------GGGCSEEEEEGGGGB
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------ccCCceEEEeCCcCc
Confidence 36999999999999999999999999999999999976 433332 346678888887543
No 66
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.99 E-value=9e-11 Score=123.53 Aligned_cols=70 Identities=24% Similarity=0.182 Sum_probs=58.7
Q ss_pred eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHH--hhccEEEEccCCC
Q 010435 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTN--IQKSIGVCPQVTL 506 (510)
Q Consensus 437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~--~r~~iG~cpQ~~~ 506 (510)
.+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+.... ++.. .|+.+|+++|...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence 46889999999999999999999999999999999999999999988874211 1222 3678999999764
No 67
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.99 E-value=5.6e-11 Score=121.78 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=55.3
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEc-cCCCc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCP-QVTLF 507 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cp-Q~~~L 507 (510)
++++++|.+++|++++|+|+||||||||+++|+|+++|++|.|.++|..- ......++.+++++ |.+.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e---~~~~~~~~~v~~v~~q~~~~ 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE---LFLPDHPNHVHLFYPSEAKE 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC---CCCTTCSSEEEEECC-----
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc---cCccccCCEEEEeecCcccc
Confidence 34999999999999999999999999999999999999999999998531 12223577899999 76543
No 68
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.1e-11 Score=128.64 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=52.2
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-e-EEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-D-ALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~-i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++||++++||+++|+||||||||||+++|+|+.+|++| + |+++| + .|+.+|++||..
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~---------~~~~i~~vpq~~ 188 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D---------PQQPIFTVPGCI 188 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C---------TTSCSSSCSSCC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C---------ccCCeeeeccch
Confidence 68999999999999999999999999999999999999 9 99998 2 267799999975
No 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.98 E-value=1.1e-10 Score=129.08 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=37.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHH---------------------HHHcCCccCC-------cceEEEcCeec
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI---------------------SCLTGITPVT-------GGDALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~---------------------~~l~G~~~pt-------~G~i~i~g~~i 485 (510)
+||+|+||+|++||++||+||||||||||+ +++.|+..|+ .|.+.++|.++
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 699999999999999999999999999998 8999999998 45566666554
No 70
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.98 E-value=8.5e-11 Score=110.72 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=39.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
..++| .++++||+++|+||||||||||+++|+|+++. +.+++.... .......++.+||+||..
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~-~~~~~~~~~~i~~~~q~~ 73 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATT-RAPRPGEVDGVDYHFIDP 73 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEES-SCCCTTCCBTTTBEECCH
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccc-cCCcccccCCCeeEecCH
Confidence 57888 79999999999999999999999999999863 444432211 011112367899999964
No 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.95 E-value=6.7e-10 Score=125.74 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=55.4
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..+...+++|.|+++ .+++|+||++++||++||+|+||||||||+++|+| |++ +|.+
T Consensus 434 ~~L~~~~ls~~yg~~---------------~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~ 490 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAK---------------ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFP 490 (986)
T ss_dssp CEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCC
T ss_pred ceeEEeeEEEEECCE---------------EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCc
Confidence 357777999999542 59999999999999999999999999999999995 443 4544
Q ss_pred cCCcccHHHhhccEEEEccC
Q 010435 485 IRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~ 504 (510)
... +.+++|++|.
T Consensus 491 ~~~-------~~~~~~v~q~ 503 (986)
T 2iw3_A 491 TQE-------ECRTVYVEHD 503 (986)
T ss_dssp CTT-------TSCEEETTCC
T ss_pred ccc-------ceeEEEEccc
Confidence 311 1247888885
No 72
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.94 E-value=8.2e-11 Score=119.06 Aligned_cols=65 Identities=20% Similarity=0.127 Sum_probs=55.7
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
+++++++.+++|++++|+|+||||||||+++|+|+++|++|.|.++|.+.. .....++.+++++|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~---~~~~~~~~i~~~~g 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI---VFKHHKNYTQLFFG 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC---CCSSCSSEEEEECB
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc---ccccchhEEEEEeC
Confidence 789999999999999999999999999999999999999999999997531 12234667888753
No 73
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.93 E-value=1.2e-11 Score=124.11 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=64.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEE-------------------eCCcEEEEecCCCCchhHHHHH
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNI-------------------AKDQLFCLLGPNGAGKTTTISC 466 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v-------------------~~gei~~llG~nGaGKsTl~~~ 466 (510)
.+++++|+|.|. ++++++++.+ ++|+++||+|+|||||||++++
T Consensus 37 ~i~~~~v~~~y~-----------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp TCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHH
T ss_pred ccchHhHHHHHH-----------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHH
Confidence 488899999992 4889999988 9999999999999999999999
Q ss_pred HcCCcc--CCcceEEE---cCeecCCcccHHHhhccEEEEccC
Q 010435 467 LTGITP--VTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 467 l~G~~~--pt~G~i~i---~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
|+|++. |++|+|.+ +|.... ...++.+|++ |.
T Consensus 100 L~~~l~~~~~~G~i~vi~~d~~~~~-----~~~~~~~~~v-q~ 136 (308)
T 1sq5_A 100 LQALLSRWPEHRRVELITTDGFLHP-----NQVLKERGLM-KK 136 (308)
T ss_dssp HHHHHTTSTTCCCEEEEEGGGGBCC-----HHHHHHHTCT-TC
T ss_pred HHHHHhhCCCCCeEEEEecCCccCc-----HHHHHhCCEe-ec
Confidence 999998 99999999 887752 1235567887 63
No 74
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.92 E-value=4e-10 Score=122.64 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=39.5
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i 478 (510)
.+++++ .+++||++||+||||||||||+++|+|+++|++|++
T Consensus 93 ~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 93 KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 677777 689999999999999999999999999999999998
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.92 E-value=1.6e-10 Score=113.67 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=33.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
.++|+||||||||||+++|+|+..|++|++.++|.++.. ...++.+|++||.+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~----~~~~~~i~~v~q~~~~ 58 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK----TVEIKAIGHVIEEGGV 58 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC----CCSCCEEEESCC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc----ceeeeeeEEEeecCCC
Confidence 579999999999999999999999999999999998742 1346789999997654
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.91 E-value=2.7e-11 Score=120.75 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=59.9
Q ss_pred EEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
+++++|++.|+ . .+++++||++++||+++|+|||||||||++++|+|++ +|+|...+....
T Consensus 102 i~~~~vs~~y~-~---------------~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~ 162 (305)
T 2v9p_A 102 FNYQNIELITF-I---------------NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKS 162 (305)
T ss_dssp HHHTTCCHHHH-H---------------HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTS
T ss_pred EEEEEEEEEcC-h---------------hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCcc
Confidence 67788888884 1 5999999999999999999999999999999999999 899987653321
Q ss_pred CcccHHHhhc-cEEEEcc
Q 010435 487 SSVSMTNIQK-SIGVCPQ 503 (510)
Q Consensus 487 ~~~~~~~~r~-~iG~cpQ 503 (510)
..-...++. ++++.++
T Consensus 163 -~lf~~ti~~~ni~~~~~ 179 (305)
T 2v9p_A 163 -HFWLASLADTRAALVDD 179 (305)
T ss_dssp -GGGGGGGTTCSCEEEEE
T ss_pred -ccccccHHHHhhccCcc
Confidence 111224554 7777653
No 77
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.90 E-value=6.2e-10 Score=121.14 Aligned_cols=57 Identities=26% Similarity=0.468 Sum_probs=49.5
Q ss_pred ceeeeeeEEEeCC-----cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl~v~~g-----ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.++++++|++++| |++||+||||||||||+++|+|+.+|++|+. +. +..++|+||..
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~--------~~~i~~~~q~~ 422 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP--------KLNVSMKPQKI 422 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC--------SCCEEEECSSC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc--------CCcEEEecccc
Confidence 4789999999999 8899999999999999999999999999962 21 34689999974
No 78
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.90 E-value=5e-10 Score=116.55 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=59.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc--------------------------------------CCcc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--------------------------------------VTGG 476 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~--------------------------------------pt~G 476 (510)
.++++++|++.+| +++|+|+|||||||++++|.++.. +++|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999966654 5578
Q ss_pred eEEEcCeecCCcccHHHhhcc-EEEEccCCCc
Q 010435 477 DALIYGFSIRSSVSMTNIQKS-IGVCPQVTLF 507 (510)
Q Consensus 477 ~i~i~g~~i~~~~~~~~~r~~-iG~cpQ~~~L 507 (510)
+++++|.++. ..+..++.+. +++++|++.+
T Consensus 128 ~i~ing~~~~-~~~~~~~~~~~i~~~~q~~~l 158 (415)
T 4aby_A 128 AARLSGEVVS-VRELQEWAQGRLTIHWQHSAV 158 (415)
T ss_dssp EEEETTEEEC-HHHHHHHHTTTEEEETTTCTT
T ss_pred EEEECCEECC-HHHHHHHHhhceEEecCcccc
Confidence 9999999985 2345666555 8999998754
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.90 E-value=4e-11 Score=120.32 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=47.0
Q ss_pred CceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEE-----------------------EeCCcEEEEecCCCCch
Q 010435 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVN-----------------------IAKDQLFCLLGPNGAGK 460 (510)
Q Consensus 404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~-----------------------v~~gei~~llG~nGaGK 460 (510)
...|++++|+|.|. ++++++++. +++|+++||+|+|||||
T Consensus 41 ~~~i~~~~v~~~y~-----------------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGK 103 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----------------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGK 103 (312)
T ss_dssp TCCCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCH
T ss_pred CCeEEeeehhhhhh-----------------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchH
Confidence 34688999999993 245555543 89999999999999999
Q ss_pred hHHHHHHcCCccCCcc
Q 010435 461 TTTISCLTGITPVTGG 476 (510)
Q Consensus 461 sTl~~~l~G~~~pt~G 476 (510)
|||+++|+|+++|+.|
T Consensus 104 STL~~~L~gll~~~~G 119 (312)
T 3aez_A 104 STTARVLQALLARWDH 119 (312)
T ss_dssp HHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhhccccCC
Confidence 9999999999999866
No 80
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.88 E-value=7.6e-10 Score=110.59 Aligned_cols=62 Identities=24% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHHh--hccEEEEccCCCc
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQVTLF 507 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~~--r~~iG~cpQ~~~L 507 (510)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... +...+ |+.+|+++|...+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 167 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGT 167 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCC
Confidence 68999999999999999999999999999999999999974321 22333 4679999997643
No 81
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.86 E-value=8.6e-11 Score=112.37 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=44.0
Q ss_pred eEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc-------cHHHhhccEEEEccC
Q 010435 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV-------SMTNIQKSIGVCPQV 504 (510)
Q Consensus 441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~-------~~~~~r~~iG~cpQ~ 504 (510)
++++.+ ++++|+|||||||||++++|+|++.|++|+|.++|.++.... ....+++.+|+++|.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 899999999999999999999999999999999998873211 112246789999984
No 82
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.84 E-value=4.3e-10 Score=107.08 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=47.0
Q ss_pred eEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.-.+++|++++|+||||||||||+++|+|+.+| ..|.+.+.+.+.+. ..++.++|+||..
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-----~e~~gi~y~fq~~ 71 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-----GEVHGEHYFFVNH 71 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-----TCCBTTTBEECCH
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-----ccccCceEEECCH
Confidence 346789999999999999999999999999986 68999998876532 2356799999964
No 83
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.84 E-value=6.5e-10 Score=111.01 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=43.1
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE---cCeecCCcccHHHh-hccEEEEccCCCc
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNI-QKSIGVCPQVTLF 507 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i---~g~~i~~~~~~~~~-r~~iG~cpQ~~~L 507 (510)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++..... .. .+.+|+++|.+.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEECTTSCEEESSCSS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEEcCCCCEEEECcCC
Confidence 456689999999999999999999999999999999999 8988743221 12 2368999998754
No 84
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.84 E-value=6.6e-10 Score=103.75 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=44.4
Q ss_pred eEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
|+++.+|++++|+|||||||||++++|+|+.+ .+.+.|.++.. ......++.+||++|..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 60 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTR-PKRPGDQEGVDYFFIDE 60 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECS-CCCTTCCBTTTBEECCH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccC-CCchhHhcCceEEeccH
Confidence 56788999999999999999999999999964 58888877642 12223366788998864
No 85
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.82 E-value=2.9e-10 Score=118.05 Aligned_cols=62 Identities=15% Similarity=0.036 Sum_probs=43.6
Q ss_pred eeeeeEEEeCCcE--EEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 437 IKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 437 v~~lsl~v~~gei--~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
++++||++++|++ ++|+|+||||||||+++|+|+. ++|.++... .....++.+|+++|.+.+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~-~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHT-QPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------C-CSSCEEEEEEEEEEC--C
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCC-CccceEeeEEEEeecCcc
Confidence 9999999999999 9999999999999999999984 344443210 111235689999997643
No 86
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.82 E-value=4.3e-10 Score=109.97 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=52.0
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
.++++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.-. .+...++++|
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~-----~~~~~~~v~q 77 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-----FKHKKSIVNQ 77 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-----CCCSSSEEEE
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee-----cCCcceeeeH
Confidence 3899999 9999999999999999999999999999998 99999999877321 1333456666
No 87
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.80 E-value=7.2e-10 Score=101.20 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=40.2
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHH------------HHcCCccCCcceEEEcCe
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTIS------------CLTGITPVTGGDALIYGF 483 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~------------~l~G~~~pt~G~i~i~g~ 483 (510)
|+||++++||+++|+|||||||||+++ .+.|+..++.|+..+.|.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~ 57 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGA 57 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHH
Confidence 689999999999999999999999999 788888888887766653
No 88
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.77 E-value=1.8e-09 Score=116.07 Aligned_cols=44 Identities=32% Similarity=0.452 Sum_probs=38.9
Q ss_pred EEE-eCCcEEEEecCCCCchhHHHHHHcCCccCCcceE-----------EEcCeec
Q 010435 442 VNI-AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-----------LIYGFSI 485 (510)
Q Consensus 442 l~v-~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-----------~i~g~~i 485 (510)
|.+ ++||++||+||||||||||+|+|+|+++|++|++ .++|.++
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeH
Confidence 444 5999999999999999999999999999999998 5667655
No 89
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.74 E-value=4.1e-09 Score=106.33 Aligned_cols=65 Identities=23% Similarity=0.194 Sum_probs=51.7
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCccc---HHHhhcc--EEEEccCCCc
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVS---MTNIQKS--IGVCPQVTLF 507 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~---~~~~r~~--iG~cpQ~~~L 507 (510)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+..... ...++++ +.+++|...+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~ 194 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA 194 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccC
Confidence 347899999999999999999999999999999999999999853222 2333444 4488886544
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.74 E-value=1.6e-09 Score=104.09 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=49.2
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHc--CCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLT--GITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~--G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
.+++||+++|+||||||||||+++|+ |+.++++|.+++++.+. ..+..+.++.+|+.+|.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~ 87 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER--ARDLRREMASFGWDFEK 87 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--HHHHHHHHHTTTCCHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC--HHHHHHHHHHcCCChHH
Confidence 79999999999999999999999999 77677888899888654 23444555678888875
No 91
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.74 E-value=2.5e-10 Score=124.71 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=47.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeee----------eEEEeCCcEEEEecCCCCchhHHHHHHcCCccC-C
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGL----------WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-T 474 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~l----------sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-t 474 (510)
.+.+++|++.|++.. ...++.+ +++++. +||+|+|||||||++++|+|+..| +
T Consensus 10 ~i~~~~l~~~~~~~~-------------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~ 73 (608)
T 3szr_A 10 SVAENNLCSQYEEKV-------------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRG 73 (608)
T ss_dssp ----------CHHHH-------------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----
T ss_pred hhhhhhhhHHHHHHH-------------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCC
Confidence 578889999996421 0123222 355554 999999999999999999999988 7
Q ss_pred cceEEEcCeecCC--cccHHHhhccEEEEccCCCc
Q 010435 475 GGDALIYGFSIRS--SVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 475 ~G~i~i~g~~i~~--~~~~~~~r~~iG~cpQ~~~L 507 (510)
+|+|.++|.++.. ..+..++|+.+||+||...+
T Consensus 74 sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l 108 (608)
T 3szr_A 74 SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEI 108 (608)
T ss_dssp ---CCCSCEEEEEEECSSSSCCEEEESCC---CCC
T ss_pred CCeEEEcCEEEEEecCCccccceeEEeeecccccC
Confidence 9999999998621 11234678899999997644
No 92
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.73 E-value=3.4e-09 Score=105.80 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=28.0
Q ss_pred eeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC-ccCCcceEEEcCeecCCc
Q 010435 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI-TPVTGGDALIYGFSIRSS 488 (510)
Q Consensus 410 ~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~-~~pt~G~i~i~g~~i~~~ 488 (510)
++|+|.|++. .++++++|+| +|+|+||||||||+++|.|. ..|++| +.++|.++..
T Consensus 2 ~~l~~~~~~~---------------~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~- 58 (301)
T 2qnr_A 2 SNLPNQVHRK---------------SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER- 58 (301)
T ss_dssp -------------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------
T ss_pred CCCcceECCE---------------EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-
Confidence 4677888532 5999999998 99999999999999999998 899999 8888887632
Q ss_pred ccHHHhhccEEEEccCCC
Q 010435 489 VSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 489 ~~~~~~r~~iG~cpQ~~~ 506 (510)
.. . ++.+++++|.+.
T Consensus 59 -t~-~-~~~~~~~~q~~~ 73 (301)
T 2qnr_A 59 -TV-Q-IEASTVEIEERG 73 (301)
T ss_dssp ---------CEEEEC---
T ss_pred -cc-e-EeeEEEEecCCC
Confidence 11 1 456899998654
No 93
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.72 E-value=3e-09 Score=101.71 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=22.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc-CCc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT-GIT 471 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~-G~~ 471 (510)
.-.+++||++++|++++|+|||||||||++++|+ |++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 998
No 94
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.72 E-value=2e-09 Score=99.41 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=37.3
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++|++++|+|+|||||||++++|+|. ++.|.+.++|.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 4789999999999999999999999998 7899999998765
No 95
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.69 E-value=5.4e-09 Score=104.34 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=45.3
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE---cCeecCCcccHHHhh-ccEEEEccCCCc
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQ-KSIGVCPQVTLF 507 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i---~g~~i~~~~~~~~~r-~~iG~cpQ~~~L 507 (510)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|.++.... ...+ +.+|+++|.+.+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~~g~v~d~pg~ 226 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGKGSFVGDTPGF 226 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETTTEEEESSCCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCCCcEEEECcCc
Confidence 45679999999999999999999999 99999999999 998874321 1222 368999998754
No 96
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.69 E-value=1.8e-09 Score=107.81 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=37.7
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE---cCeecCCcccHHHhhccEEEEccCCCcc
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQVTLFS 508 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i---~g~~i~~~~~~~~~r~~iG~cpQ~~~L~ 508 (510)
+++.+|++++|+|+||+|||||+|+|+|+.+|+.|+|.+ +|.++.... ...+..+|+++|.+.+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~ 235 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFS 235 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSCSCS
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCcc
Confidence 556789999999999999999999999999999999999 887764211 12222379999987553
No 97
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.64 E-value=1.4e-08 Score=103.38 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=46.0
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-CCcceEEEc-CeecCCcccHHHhhccEEEEccCCC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIY-GFSIRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-pt~G~i~i~-g~~i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
-++++++. .+|++++|+|+||||||||+++|+|+.+ |+.|+|.++ |.+.. + ..++.++++||...
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~--t---t~~~~i~~v~q~~~ 271 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH--T---TTAARLYHFPHGGD 271 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC------------------CCCEEEECTTSCE
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc--c---eEEEEEEEECCCCE
Confidence 46677764 4899999999999999999999999999 999999997 76642 1 34568999999753
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.63 E-value=7e-09 Score=98.28 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=43.2
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCccC-------CcceEEEcCeecCCcccHHHhhccEEEEc
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPV-------TGGDALIYGFSIRSSVSMTNIQKSIGVCP 502 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-------t~G~i~i~g~~i~~~~~~~~~r~~iG~cp 502 (510)
.+++||+++|+|||||||||++++|+|...+ ..|.+++++.+......+..+.+..|+.|
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~ 87 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP 87 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCH
Confidence 7999999999999999999999999996554 44588998876422223333444444433
No 99
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.58 E-value=5.4e-09 Score=97.68 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=36.6
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc-----cCCcceEEE
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----PVTGGDALI 480 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~-----~pt~G~i~i 480 (510)
.+++++++|.|+. .++++ |.+++|+.++|+|+||||||||++.|+|.. .|+.|++..
T Consensus 3 ~l~~~~~~~~~~~----------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA----------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE----------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec----------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 3678999999942 36777 889999999999999999999999999998 888898765
No 100
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.58 E-value=6.3e-09 Score=111.11 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=48.0
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
.+++++++.+++|++++|+||||||||||+++|+|+++|++|.+.+.|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 58999999999999999999999999999999999999999999999865
No 101
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.58 E-value=1.2e-08 Score=106.10 Aligned_cols=76 Identities=20% Similarity=0.077 Sum_probs=47.1
Q ss_pred ceEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..+.+++|++.|++. .+++|++|+| +|+|+||||||||+++|+|...++.|. +|.+
T Consensus 10 ~~l~~~~l~~~y~~~---------------~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~ 65 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---------------SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPS 65 (418)
T ss_dssp -----CCCCCCTTTT---------------TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC
T ss_pred CcEEEEecceeECCE---------------EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcc
Confidence 358899999999542 5999999998 999999999999999999998866652 3332
Q ss_pred cCCcccHHHhhccEEEEccCCC
Q 010435 485 IRSSVSMTNIQKSIGVCPQVTL 506 (510)
Q Consensus 485 i~~~~~~~~~r~~iG~cpQ~~~ 506 (510)
+.... ...++.+|+++|.+.
T Consensus 66 ~~~~~--t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 66 HRIKK--TVQVEQSKVLIKEGG 85 (418)
T ss_dssp -------CCEEEEEECC-----
T ss_pred cCCcc--ceeeeeEEEEEecCC
Confidence 21100 011356888888654
No 102
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.57 E-value=7.9e-09 Score=100.35 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=54.7
Q ss_pred eCCcEEEEecCCCCchhHHHHHHc---CCccCCcceEE--------EcCeecCCcccHHHhhccEEEEccCC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~--------i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
++|++++|+|+|||||||++++|+ |+..+++|.++ .+|.++.+.....++++.+|+++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999999 99998854456778899999999753
No 103
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.55 E-value=7.6e-09 Score=96.68 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=32.0
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCcc-------------CCcceEEEcCeec
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITP-------------VTGGDALIYGFSI 485 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~-------------pt~G~i~i~g~~i 485 (510)
+++|++++|+||||||||||+++|+|+++ |..|+ ++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~ 53 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDY 53 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTB
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceE
Confidence 35799999999999999999999999876 77887 577765
No 104
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.54 E-value=6.8e-09 Score=106.68 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=51.5
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
++++++ +++|++++|+||||||||||++.|+|+++|+ +|+|.+.|.++. . ..++.+++++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e--~---~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE--Y---VFKHKKSIVNQR 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC--S---CCCCSSSEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh--h---hhccCceEEEee
Confidence 455554 7899999999999999999999999999998 899988776652 1 346788999993
No 105
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.52 E-value=6.9e-09 Score=102.98 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=45.5
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCeec
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~i 485 (510)
.+|+++++++++||+++|+|+|||||||+++.|+|...|++| .+.+.+.+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 589999999999999999999999999999999999999988 776554443
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.51 E-value=4.4e-08 Score=108.36 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=43.7
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH----------------------cCCccCCcceEEEcCeecC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL----------------------TGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l----------------------~G~~~pt~G~i~i~g~~i~ 486 (510)
.+|+|+||+|++||+++|+||||||||||+++| .|+.++ +|.+.++|.++.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~ 408 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIG 408 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSC
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCC
Confidence 589999999999999999999999999999875 355554 468899988774
No 107
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.50 E-value=2.3e-09 Score=109.90 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=42.8
Q ss_pred eeeeeeEEEeC--CcEEEEecCCCCchhHHHHHHcCCccCCc----ceEEEc
Q 010435 436 AIKGLWVNIAK--DQLFCLLGPNGAGKTTTISCLTGITPVTG----GDALIY 481 (510)
Q Consensus 436 av~~lsl~v~~--gei~~llG~nGaGKsTl~~~l~G~~~pt~----G~i~i~ 481 (510)
..+.|+++|++ |+.++|+|+||||||||+++|+|+++|++ |+++++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 35679999999 99999999999999999999999999999 999874
No 108
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.49 E-value=9.1e-09 Score=94.00 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=42.2
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCeecCCcc--cHHHhh-ccEE----EEccCCC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSV--SMTNIQ-KSIG----VCPQVTL 506 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~i~~~~--~~~~~r-~~iG----~cpQ~~~ 506 (510)
++++|+|+|||||||+++.|.|+++|+ .|+|.++|.++.+.. ..+.+| +.+| +++|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~ 71 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL 71 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcE
Confidence 589999999999999999999999998 899999999864211 144666 4678 8888653
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.45 E-value=2.2e-08 Score=92.96 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=34.7
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
||+++|+|+||||||||+++|+|+++ ++| +.++|.++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 78999999999999999999999999 999 99988765
No 110
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.43 E-value=5.6e-08 Score=111.57 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=41.7
Q ss_pred ceEEEee-----eEEEcCCCCCcccccccCCCCCcceeeeeeEEEeC-------CcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 405 VAVQIRG-----LVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK-------DQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 405 ~~i~~~~-----l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~-------gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
..+++++ |.+.|.+. ..+++|++|++++ |++++|+|||||||||+++++ |+..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--------------~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--------------DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CC--------------CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCC--------------ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4589999 88888432 1589999999987 999999999999999999999 9876
Q ss_pred C
Q 010435 473 V 473 (510)
Q Consensus 473 p 473 (510)
+
T Consensus 814 ~ 814 (1022)
T 2o8b_B 814 V 814 (1022)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.43 E-value=8.1e-09 Score=107.47 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=44.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++ + .++|++++|+||||||||||+++|.|+++|++|+|.+.|.++
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 367777 4 389999999999999999999999999999999999999876
No 112
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.41 E-value=4.9e-08 Score=91.07 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=42.3
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
.+-+..+..++|++++|+|+|||||||++++|+|.+ |.+.++|.++.. .....+...|+.+|.
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTD 80 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCC
Confidence 444444667889999999999999999999999987 999999988742 212223346777774
No 113
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.41 E-value=5.3e-08 Score=89.80 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=31.5
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCcc-------------CCcceEEEcCeec
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITP-------------VTGGDALIYGFSI 485 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~-------------pt~G~i~i~g~~i 485 (510)
|++++|+|||||||||++++|+|+++ |.+|++ +|.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~ 50 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDY 50 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTB
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeee
Confidence 67899999999999999999999998 667764 66544
No 114
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.39 E-value=6.8e-08 Score=90.71 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=38.7
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCccC---CcceEEEcCeecC
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFSIR 486 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~p---t~G~i~i~g~~i~ 486 (510)
.++|++++|+|+||||||||+++|+|+++| +.|.+.++|..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 478999999999999999999999999986 5799999998763
No 115
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.38 E-value=1.1e-08 Score=95.51 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=46.6
Q ss_pred cceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE--EEcCeecC
Q 010435 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA--LIYGFSIR 486 (510)
Q Consensus 434 ~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i--~i~g~~i~ 486 (510)
+.+.++.++..++|++++|+|+|||||||+.++|++.+. .+|.+ +++|.+++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 357788888899999999999999999999999999998 78988 99988763
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.36 E-value=2.6e-08 Score=94.21 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=46.4
Q ss_pred ceeeeeeE-EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl-~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+||++.. .+++|++++|+|+|||||||+++.|++...+++|.+.+.+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 58999998 8999999999999999999999999999988889988877654
No 117
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.35 E-value=1.7e-07 Score=105.11 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=33.2
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHH-HcCCc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISC-LTGIT 471 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~-l~G~~ 471 (510)
+|+|+||+|++||++||+|+||||||||+++ |.|++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 6999999999999999999999999999997 77554
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.31 E-value=1.8e-07 Score=89.19 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=47.1
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcC--CccC-----CcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTG--ITPV-----TGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G--~~~p-----t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
.+++|++++|+|+|||||||+++.|++ ..+| +.|.+++++.+..+..++.+.++.+|+.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 87 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 87 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH
Confidence 589999999999999999999999999 5665 678999998763222234445556676664
No 119
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.30 E-value=4.1e-08 Score=96.57 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=52.7
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
.+++++++.+++| ++|.||||+||||++++|+|...+ |.+.++|.++.+ ....+.++.+++++|.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~-~~~~~~~~~i~~vf~~ 98 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLN-MYVGESERAVRQVFQR 98 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCS-STTHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHh-hhhhHHHHHHHHHHHH
Confidence 5899999999999 999999999999999999999877 799999988743 2233445556666663
No 120
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.28 E-value=3e-07 Score=92.41 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=50.6
Q ss_pred eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc----------------------------------------------
Q 010435 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT---------------------------------------------- 471 (510)
Q Consensus 438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~---------------------------------------------- 471 (510)
+++++++.+| +++|+|+|||||||+++.|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3567888888 99999999999999999998432
Q ss_pred ----cCCcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 472 ----PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 472 ----~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
.+.+|.++++|.+++ ..+.....+.+|++||.
T Consensus 95 r~~~~~~~~~~~ing~~~~-~~~~~~~~~~~g~~~~~ 130 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVR-LKDIRDRFAGTGLGVDF 130 (322)
T ss_dssp EEEETTSCEEEEETTEEEC-HHHHHHHTTTSSTTTTC
T ss_pred EEEEcCCceEEEECCcCcc-HHHHHHHHHHcCCChhh
Confidence 334578899998874 35566667778876664
No 121
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.27 E-value=2.7e-07 Score=92.68 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=56.4
Q ss_pred eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcc---cHHHh-----hccEEEE-ccCC
Q 010435 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI-----QKSIGVC-PQVT 505 (510)
Q Consensus 437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~---~~~~~-----r~~iG~c-pQ~~ 505 (510)
+++++|.+++|++++++|+||+|||||+..|++.+.+..|++.+.+.|+.... +...+ +..++++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 36888999999999999999999999999999999999999999998875321 12333 5679999 6653
No 122
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.25 E-value=6.5e-09 Score=105.19 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=56.3
Q ss_pred ceeeeeeEEEeCC-------cEEEEecCCCCchhHHHHHHcCCc----cCCcceEEEcCeecCCcccHHHh-hccEEEEc
Q 010435 435 HAIKGLWVNIAKD-------QLFCLLGPNGAGKTTTISCLTGIT----PVTGGDALIYGFSIRSSVSMTNI-QKSIGVCP 502 (510)
Q Consensus 435 ~av~~lsl~v~~g-------ei~~llG~nGaGKsTl~~~l~G~~----~pt~G~i~i~g~~i~~~~~~~~~-r~~iG~cp 502 (510)
.+++++++.+++| +.++|.||||+||||++++|+|.. .+++|.+..+|.++. .-.... ++.+++++
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~--~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA--AILTSLERGDVLFID 109 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH--HHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH--HHHHHccCCCEEEEc
Confidence 5889999999877 899999999999999999999998 778888877766552 111222 46799999
Q ss_pred cCCCc
Q 010435 503 QVTLF 507 (510)
Q Consensus 503 Q~~~L 507 (510)
|.+.|
T Consensus 110 E~~~l 114 (334)
T 1in4_A 110 EIHRL 114 (334)
T ss_dssp TGGGC
T ss_pred chhhc
Confidence 97655
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.23 E-value=1.4e-07 Score=96.19 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=47.2
Q ss_pred ceeeeeeE-------EEeCCcEEEEecCCCCchhHHHHHHcCCccCC-cceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWV-------NIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl-------~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt-~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
..++++.+ .+.+|++++|+||||||||||+++|+|+++|+ +|.+...+.++. . ..+...++++|..
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e--~---~~~~~~~~v~q~~ 177 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE--F---VHESKKCLVNQRE 177 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--S---CCCCSSSEEEEEE
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--h---hhhccccceeeee
Confidence 35556555 67899999999999999999999999999998 566655444431 1 1233445666643
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.20 E-value=3e-07 Score=84.62 Aligned_cols=36 Identities=36% Similarity=0.524 Sum_probs=32.5
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
|++++|+|+|||||||++++|++ |.+|.++++|.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 68999999999999999999987 6789999998664
No 125
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.19 E-value=1.2e-07 Score=91.97 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=35.3
Q ss_pred ceEEEeee-EEEcCCCCCcccccccCCCCCcceeeeeeEEEeC---CcEEEEecCCCCchhHHHHHHcCCc
Q 010435 405 VAVQIRGL-VKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK---DQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 405 ~~i~~~~l-~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~---gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
..++++|+ +|.|++. ..+++++||++++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~--------------~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE--------------QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc--------------chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 9999322 2699999999999 9999999999999999999998854
No 126
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.15 E-value=2.8e-07 Score=93.76 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=45.0
Q ss_pred ceeeee-eEEEeCCcEEEEecCCCCchhHHHHHHcCCc--cCCc----ce-EEEcCeec
Q 010435 435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTG----GD-ALIYGFSI 485 (510)
Q Consensus 435 ~av~~l-sl~v~~gei~~llG~nGaGKsTl~~~l~G~~--~pt~----G~-i~i~g~~i 485 (510)
..+|.+ ...+++|++++|.|+|||||||+++.++|.. +|++ |+ ++|++.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 467776 6899999999999999999999999999998 7776 68 89998764
No 127
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.15 E-value=7.7e-07 Score=82.72 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=29.8
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G 476 (510)
+++++|++++|+|+|||||||++++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36789999999999999999999999999977655
No 128
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.14 E-value=8.2e-07 Score=81.06 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=37.3
Q ss_pred ee--eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435 436 AI--KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (510)
Q Consensus 436 av--~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i 478 (510)
.+ +++++++.+| +++|+|+|||||||++++|.+++.++.|..
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 55 7889999999 999999999999999999999988877654
No 129
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.07 E-value=4.3e-07 Score=87.45 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=35.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHc---CCccCCcceEEEcCee
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALIYGFS 484 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~i~g~~ 484 (510)
++++++|+|+|||||||++++|+ |+..|+.|++.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 36899999999999999999999 9999999999887754
No 130
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.06 E-value=7e-07 Score=91.94 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=37.7
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcC------------CccCCcceEEEcCee
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTG------------ITPVTGGDALIYGFS 484 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G------------~~~pt~G~i~i~g~~ 484 (510)
++++|+.+||+|+||||||||+++|+| ...|+.|.+.+.|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence 457899999999999999999999999 667999999998743
No 131
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.06 E-value=1.1e-06 Score=99.04 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=31.5
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
+|+|+||+|++||++||+|+||||||||+++|.
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 799999999999999999999999999999864
No 132
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.06 E-value=9.7e-07 Score=88.56 Aligned_cols=39 Identities=26% Similarity=0.185 Sum_probs=36.6
Q ss_pred cEEEEecCCCCchhHHHHHHcCCc--------cCCcceEEEcCeecC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGIT--------PVTGGDALIYGFSIR 486 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~--------~pt~G~i~i~g~~i~ 486 (510)
++++|+|+|||||||++++|.|+. .|+.|++.|+|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 689999999999999999999997 789999999999875
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.04 E-value=1.9e-06 Score=89.47 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=33.4
Q ss_pred eeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 437 v~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
-++++|+++.|++++|+|+||||||||+++|+|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 57999999999999999999999999999999983
No 134
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.03 E-value=1.9e-06 Score=97.54 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=31.4
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
+|+|+||+|++||++||+|+||||||||+++|.
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 799999999999999999999999999999853
No 135
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.02 E-value=3.7e-07 Score=98.14 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=39.0
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEE-EcCeec
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DAL-IYGFSI 485 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~-i~g~~i 485 (510)
.+++|++++|+|+|||||||++++|+|.+.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999987 785 888765
No 136
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.02 E-value=1.2e-06 Score=81.85 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=26.8
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
.++|+++||+|+|||||||++++|+|++.|
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999999999875
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.02 E-value=1.2e-06 Score=77.79 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=39.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc--eEEEcCeecC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSIR 486 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G--~i~i~g~~i~ 486 (510)
.+++++ +|++++|.|+||+||||++++++|...+ +| .+++++.++.
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP 76 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence 466666 8999999999999999999999999987 58 8888887663
No 138
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.01 E-value=4.5e-07 Score=85.78 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=48.0
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCc---cCCcceEEE--------cCeecCCcccHHHhhccEEEEccC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDALI--------YGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~---~pt~G~i~i--------~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
+.+++|+|++||||||+.++|.+.+ .++.|+++. +|.++.+.....++++.+|+.+|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 5689999999999999999999766 788999988 787764333466788889999885
No 139
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.99 E-value=2.8e-06 Score=96.43 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=38.5
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHH--------cCCccCCcc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL--------TGITPVTGG 476 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l--------~G~~~pt~G 476 (510)
.+++|++|++.+|++++|+|||||||||+++++ .|.+-|.++
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 589999999999999999999999999999999 888777654
No 140
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.97 E-value=1.7e-06 Score=79.18 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.4
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccC-CcceEE
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDAL 479 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p-t~G~i~ 479 (510)
.+|++++|+|||||||||++++|.|..++ ..|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 46899999999999999999999998864 445543
No 141
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.97 E-value=1.7e-06 Score=96.44 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=37.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc-CCcceE
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDA 478 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~-pt~G~i 478 (510)
.+++|++|+ |++++|+|||||||||++++++|+.. +..|.+
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 689999999 99999999999999999999999874 667753
No 142
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.96 E-value=2.7e-06 Score=81.01 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=44.3
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC-----cccHHH----hhccEEEEccCC
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-----SVSMTN----IQKSIGVCPQVT 505 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~-----~~~~~~----~r~~iG~cpQ~~ 505 (510)
..++|++++|.|+|||||||++++|.|. .|++.+.|.+... .....+ .++.+++++|..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 83 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSY 83 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHH
Confidence 4478999999999999999999999998 7899999877521 012221 245678888753
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.96 E-value=2.6e-06 Score=88.00 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=49.8
Q ss_pred eeeee-eEEEeCCcEEEEecCCCCchhHHHH--HHcCCccCCcc-----eEEEcCeecCCcccHHHhhccEEEEcc
Q 010435 436 AIKGL-WVNIAKDQLFCLLGPNGAGKTTTIS--CLTGITPVTGG-----DALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 436 av~~l-sl~v~~gei~~llG~nGaGKsTl~~--~l~G~~~pt~G-----~i~i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
.+|.+ .=.+++|+++.|.|+||+||||+++ ++.+..+++.| .+++++.+..+...+.++++++|+.||
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 44443 1379999999999999999999999 45688887555 899999874322334455667777665
No 144
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.96 E-value=2e-06 Score=97.43 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=33.3
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
.+++|++|++++|++++|+|||||||||+++++++
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 58999999999999999999999999999999874
No 145
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.95 E-value=1.6e-06 Score=80.85 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=37.8
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.++|++++|.|+|||||||++++|.+.+++..|.+.+.+.|.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 567899999999999999999999999999999998876654
No 146
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.95 E-value=1.6e-06 Score=78.63 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=33.8
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
.+|++++|+|+|||||||+.++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88999987764
No 147
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.95 E-value=4.8e-07 Score=92.77 Aligned_cols=62 Identities=27% Similarity=0.418 Sum_probs=47.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEccCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVT 505 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~ 505 (510)
.+++++++++++|++++|.||||+||||++++|+|. .+|++.... .. .+..+..+|++||..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~----~~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LP----LDRLNFELGVAIDQF 218 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SC----TTTHHHHHGGGTTCS
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--cc----chhHHHHHHHhcchh
Confidence 589999999999999999999999999999999985 467766511 11 112233467777755
No 148
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.93 E-value=5.6e-06 Score=93.66 Aligned_cols=30 Identities=27% Similarity=0.580 Sum_probs=28.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHH
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~ 464 (510)
.+|+|+||++++||++||+|+||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 479999999999999999999999999997
No 149
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.93 E-value=4.6e-06 Score=84.95 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=39.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC-------------CccCCcceEEEcC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-------------ITPVTGGDALIYG 482 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G-------------~~~pt~G~i~i~g 482 (510)
+.++++++++.+| +++|+|||||||||++++|.+ ++...++.+.|.+
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~~g~~R~~~~~~lI~~g~~~~~V~~ 74 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRA 74 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHSCCCCSSGGGGBCTTCSCEEEEE
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhccCCCCCCCHHHHhccCCCcEEEEE
Confidence 3678999999999 999999999999999999997 5666666666655
No 150
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.91 E-value=4.1e-06 Score=93.80 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=34.7
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.+++|++|+ ++|++++|+|||||||||++++++|+..
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 589999999 9999999999999999999999999753
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.89 E-value=2.5e-06 Score=85.02 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=43.3
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
.+++..++|++++++|+||+|||||+..|+|.+.++.|++.+.+.|..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 345667889999999999999999999999999999999999998874
No 152
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.89 E-value=3e-06 Score=90.75 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=55.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC----------------------c----------------cCCcc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI----------------------T----------------PVTGG 476 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~----------------------~----------------~pt~G 476 (510)
..++++++++.+| +.+|+|+|||||||++..|.++ + ...++
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~ 127 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCC
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCc
Confidence 3678899999999 9999999999999999999544 3 23467
Q ss_pred eEEEcCeecCCcccHHHh-hccEEEEccCCCcc
Q 010435 477 DALIYGFSIRSSVSMTNI-QKSIGVCPQVTLFS 508 (510)
Q Consensus 477 ~i~i~g~~i~~~~~~~~~-r~~iG~cpQ~~~L~ 508 (510)
+++++|..+. ..+..++ ...+.+.+|++.+.
T Consensus 128 ~~~ing~~v~-~~~l~~~~~~li~i~~q~~~~~ 159 (517)
T 4ad8_A 128 AARLSGEVVS-VRELQEWAQGRLTIHWQHSAVS 159 (517)
T ss_dssp EEESSSSBCC-HHHHHHHHTTTEEEESGGGGGT
T ss_pred EEEECCEECC-HHHHHHHhhhheEEeCCchHHh
Confidence 8999998874 2234444 45679999987553
No 153
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.87 E-value=4.8e-07 Score=87.40 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=42.8
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++++++| +.|.||||+||||++++|+|... .|.+.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 4899999999999 88999999999999999999875 79999998765
No 154
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.86 E-value=1.8e-06 Score=78.79 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=32.0
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~ 477 (510)
+.+.+|++++|.||||+||||+++.++|...|++|.
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 455679999999999999999999999999877773
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.85 E-value=5.3e-07 Score=88.46 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=42.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++.+++| +.|+||||+||||++++|+|... .|.+.++|.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~ 109 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 109 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence 5899999999999 88999999999999999999885 79999998765
No 156
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.85 E-value=4.9e-06 Score=77.41 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=34.1
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCcc-------------CCcceEEEcCeec
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITP-------------VTGGDALIYGFSI 485 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~-------------pt~G~i~i~g~~i 485 (510)
+...+|++++|+|||||||||+++.|.+..+ |..|+ ++|.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y 68 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEY 68 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccc
Confidence 3445899999999999999999999999876 66776 677664
No 157
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=6.6e-06 Score=76.38 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=24.7
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6999999999999999999999999999999999765
No 158
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.83 E-value=4.1e-06 Score=83.10 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=44.3
Q ss_pred eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (510)
Q Consensus 438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~ 487 (510)
++++|+ +|++++++|+||+||||+...|+|.+.+..|++.+.+.|.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 677887 999999999999999999999999999999999999988753
No 159
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.81 E-value=8.6e-06 Score=74.90 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=32.5
Q ss_pred EEEEecCCCCchhHHHHHHcCCccC-----------CcceEEEcCeec
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPV-----------TGGDALIYGFSI 485 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~p-----------t~G~i~i~g~~i 485 (510)
.++|+|+||||||||++.++|...+ +.|++.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 5789999999999999999998765 578999999765
No 160
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.81 E-value=4.8e-06 Score=76.26 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.3
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVT 474 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt 474 (510)
+++|+||||||||||+++|+|++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57999999999999999999998643
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.81 E-value=7.7e-06 Score=76.62 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=27.5
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
++|++++|+|||||||||++++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999886
No 162
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.80 E-value=1.9e-06 Score=86.29 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=40.0
Q ss_pred ceeeeeeEEEeCCc------EEEEecCCCCchhHHHHHHcCCcc--CCcceEEEcC
Q 010435 435 HAIKGLWVNIAKDQ------LFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYG 482 (510)
Q Consensus 435 ~av~~lsl~v~~ge------i~~llG~nGaGKsTl~~~l~G~~~--pt~G~i~i~g 482 (510)
.++++++..+.+++ ++||.|+|||||||++++|.|++. |++|.+.+-+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 57788888887776 999999999999999999999987 5677755433
No 163
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.74 E-value=3.2e-06 Score=85.58 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=46.9
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++++.+.+|++++++|+|||||||+++.|+|.+.+..|++.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 588999999999999999999999999999999999998889988877665
No 164
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.72 E-value=3.6e-06 Score=78.85 Aligned_cols=48 Identities=21% Similarity=0.091 Sum_probs=41.2
Q ss_pred ceeeeeeE-EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl-~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
.++|++.. .+++|++++|.|+||+||||+++.+++ .+..+.+++++.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence 57888876 799999999999999999999999999 5556677887654
No 165
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.71 E-value=1.1e-05 Score=80.09 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=37.5
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCeecC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSIR 486 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~i~ 486 (510)
.+|++++++|+||+|||||+..|++.+.+++| +|.+-+.|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 47999999999999999999999999999888 7887776663
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.70 E-value=6.8e-06 Score=89.65 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=55.0
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCc-ceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~-G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
.+++++++.+.+|+.+.|.||||+||||+++.|+|+.+++. |.+.+.+.+.. .....+++|||-
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~------~~~p~i~~~p~g 112 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED------ENMPRIKTVPAC 112 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC------TTSCEEEEEETT
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc------ccCCcEEEEecc
Confidence 58999999999999999999999999999999999999988 88888876652 234568888764
No 167
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.70 E-value=1.7e-05 Score=80.95 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=30.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
.+++++++++.+| +++|+|||||||||++++|+
T Consensus 12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4688899999998 89999999999999999998
No 168
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.66 E-value=5.2e-06 Score=79.07 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=45.6
Q ss_pred ceeeee-eEEEeCCcEEEEecCCCCchhHHH-HHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435 435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTI-SCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 435 ~av~~l-sl~v~~gei~~llG~nGaGKsTl~-~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
..+|++ .-.+++|+++.|.|+||+||||++ +++.+..+...+.+++++..- ..++.+..+.+|+.+|
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~--~~~~~~~~~~~g~~~~ 78 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH--PVQVRQNMAQFGWDVK 78 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC--HHHHHHHHHTTTCCCH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC--HHHHHHHHHHcCCCHH
Confidence 467777 678999999999999999999994 555566565556677766432 2233333334566554
No 169
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.66 E-value=1.5e-05 Score=83.26 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=29.5
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G 476 (510)
+++.+|++++|+|||||||||++++|+++..++++
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 45677999999999999999999999999988763
No 170
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.66 E-value=1.1e-05 Score=81.34 Aligned_cols=55 Identities=24% Similarity=0.178 Sum_probs=33.5
Q ss_pred EEEecCCCCchhHHHHHHcC-CccCCcceEEEcCeecCCcccHHHhhccEEEEccCCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTG-ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQVTLF 507 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G-~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~~~L 507 (510)
+.|.||||+||||+++.|+| +..|+.|++.++|.+... ....+..+++++|.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~---~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT---ASNRKLELNVVSSPYHL 94 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------CCEECSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc---cccccceeeeecccceE
Confidence 78999999999999999999 889999999999987632 12236778888887644
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.63 E-value=2.2e-05 Score=72.45 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=30.7
Q ss_pred EEEEecCCCCchhHHHHHHcCCcc-----CC------cceEEEcCeec
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITP-----VT------GGDALIYGFSI 485 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~-----pt------~G~i~i~g~~i 485 (510)
.++|+|+||||||||++.|+|... || .|++.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 478999999999999999999743 43 57899999754
No 172
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.55 E-value=2.1e-05 Score=79.85 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=37.0
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
+++.+++|+|++|||||||++.|+|...+++|++.|.+.|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 35679999999999999999999999999999999988765
No 173
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.51 E-value=1.2e-05 Score=86.48 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=43.5
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEEEEcc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
.+++++++++ +|++++|+||||+||||+++.|++...++.|++.+.|..... ......++.+|..+|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~-~~~g~~~~~ig~~~~ 163 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES-EIRGHRRTYVGAMPG 163 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------------
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh-hhhhHHHHHhccCch
Confidence 5788888888 899999999999999999999999999999999888743211 111223455676665
No 174
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.49 E-value=5.4e-05 Score=70.41 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=27.8
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
=++++|++++|.|++||||||+.++|.+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567889999999999999999999999864
No 175
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.48 E-value=2.5e-05 Score=83.72 Aligned_cols=43 Identities=21% Similarity=0.153 Sum_probs=37.4
Q ss_pred eEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce--EEEcCee
Q 010435 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD--ALIYGFS 484 (510)
Q Consensus 441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~--i~i~g~~ 484 (510)
+.++++|++++|.|+|||||||+++.++|..+|+ |+ +++.+.+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee 319 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE 319 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence 4499999999999999999999999999999886 65 5776654
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.38 E-value=3e-05 Score=85.45 Aligned_cols=62 Identities=23% Similarity=0.110 Sum_probs=46.2
Q ss_pred eEEEeCCcEEEEecCCCCchhHHHHHHcCCccC--CcceEEEcCeecCCcccHHHhhccEEEEccC
Q 010435 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p--t~G~i~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
++.+++++.++|+||+|+|||||++.|++...+ +.|+| .+|..+.+ ....+.++.+++.+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d-~~~~e~~~giti~~~~ 66 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTD-YTPEAKLHRTTVRTGV 66 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSC-CSHHHHHTTSCCSCEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccccc-CCHHHHhcCCeEEecc
Confidence 456788999999999999999999999977655 67888 67776653 3445556677777664
No 177
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.34 E-value=4.4e-05 Score=69.27 Aligned_cols=40 Identities=30% Similarity=0.262 Sum_probs=33.4
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCCcc--eEEEcCeec
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSI 485 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G--~i~i~g~~i 485 (510)
++|++++|.|++||||||+.++|.+.+++ .| .+.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47899999999999999999999998876 56 667777554
No 178
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.33 E-value=6.6e-05 Score=77.98 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=43.7
Q ss_pred eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCC
Q 010435 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS 487 (510)
Q Consensus 438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~ 487 (510)
++++++ +|++++++|+||+||||+...|++.+.+..|++.+.+.|...
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 567777 899999999999999999999999999999999999888753
No 179
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.33 E-value=6.2e-05 Score=67.62 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=28.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
.|++++|+|+|||||||+.++|++.+.+ .++++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d 36 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSD 36 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEecc
Confidence 4688999999999999999999997654 566653
No 180
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.30 E-value=5.1e-05 Score=75.21 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=42.9
Q ss_pred ee-eeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 438 KG-LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 438 ~~-lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++ ++++.+ |++++++|+||+||||++..|++.+.+..|++.+.+.|.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 35 777766 9999999999999999999999999999999999888874
No 181
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.21 E-value=0.00013 Score=71.33 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=28.2
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
.+++|++++|+|+|||||||++..+++....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5889999999999999999999999986654
No 182
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.19 E-value=0.00017 Score=63.86 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=23.2
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
+.++++.+ .+++|+|||||||||++..|.
T Consensus 16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence 34445544 489999999999999999986
No 183
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.15 E-value=6.1e-05 Score=70.42 Aligned_cols=44 Identities=18% Similarity=0.093 Sum_probs=39.0
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc--eEEEcCeec
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSI 485 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G--~i~i~g~~i 485 (510)
+.+++|.++.|.|++||||||+.+.|.+.+.|+.| .+.++|.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 44678999999999999999999999999988888 888987655
No 184
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.14 E-value=1.1e-05 Score=81.24 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=48.8
Q ss_pred ceeeeeeEEEeCCcE--EEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecCCcccHHHhhccEE
Q 010435 435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIG 499 (510)
Q Consensus 435 ~av~~lsl~v~~gei--~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~~~~~~~~~r~~iG 499 (510)
.+++.++..+++|++ +.+.||+|+||||+++++++.+.+..+++.+.+.+..+....+.+|+.++
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~ 98 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIK 98 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHH
Confidence 588999999999998 99999999999999999999988777765554444322223445554443
No 185
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.12 E-value=0.00024 Score=64.89 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=28.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC----C----ccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG----I----TPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G----~----~~pt~G~i~i~g~~ 484 (510)
.+++++++..++. .++++|++|+||||+++.+++ . ..++.+++.++|..
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 4889999998887 457999999999999999997 2 23345667777754
No 186
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.02 E-value=0.00025 Score=67.42 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=32.8
Q ss_pred ceeeeeeEEEe---CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435 435 HAIKGLWVNIA---KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (510)
Q Consensus 435 ~av~~lsl~v~---~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~ 481 (510)
.-+.++++.+. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 34666677665 8999999999999999999999999988 6777654
No 187
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.01 E-value=0.00028 Score=73.70 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=32.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCcc------------CCcceEEEcCeec
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFSI 485 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~------------pt~G~i~i~g~~i 485 (510)
.++|+|+||+|||||++.|+|... +.+|.+.++|.++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 689999999999999999999854 6679999999864
No 188
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.01 E-value=0.00042 Score=70.59 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=31.3
Q ss_pred EEEEecCCCCchhHHHHHHcCCcc-----------CCcceEEEcCeec
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITP-----------VTGGDALIYGFSI 485 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~-----------pt~G~i~i~g~~i 485 (510)
+++|+|++||||||+++.|+|... |+.|++.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 488999999999999999999876 6779999998764
No 189
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.00 E-value=0.00027 Score=65.42 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=24.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
+++|+|+|||||||+.++|+++ |...+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6899999999999999999983 5555554
No 190
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.00 E-value=0.00017 Score=66.53 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=39.5
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC--------ccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~--------~~pt~G~i~i~g~~ 484 (510)
.+++++++..+++. ++++|++|+||||+++.+++- ..++.+++.++|..
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 48899999888875 579999999999999999972 33456777777754
No 191
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.99 E-value=0.00011 Score=74.75 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=45.8
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceee--------------eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK--------------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~--------------~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.+.++||+..|+..+ ..++ |+.+.+.+||..+|+|++|+||||++++|++..
T Consensus 133 ri~Fe~ltp~yP~er--------------~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSR--------------LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSB--------------CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc--------------cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 477889999997642 3566 899999999999999999999999999999876
Q ss_pred c
Q 010435 472 P 472 (510)
Q Consensus 472 ~ 472 (510)
.
T Consensus 199 ~ 199 (422)
T 3ice_A 199 A 199 (422)
T ss_dssp H
T ss_pred h
Confidence 4
No 192
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.97 E-value=0.00054 Score=61.54 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=30.1
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccC------------CcceEEEcCee
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV------------TGGDALIYGFS 484 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p------------t~G~i~i~g~~ 484 (510)
++|..++|+|++|+||||+++.|+|...+ ..+.+.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE
Confidence 35778999999999999999999986421 13667777754
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.94 E-value=0.00027 Score=71.75 Aligned_cols=42 Identities=21% Similarity=0.518 Sum_probs=33.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC--CccCCcceEE
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDAL 479 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G--~~~pt~G~i~ 479 (510)
.++++++++++ .++++|++||||||+++.|+| ++++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 58999999998 889999999999999999999 6677777664
No 194
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.91 E-value=0.00011 Score=78.07 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=42.4
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
.+++++++.+++| +.|.||||+||||+++.|+|... .|.+.++|.++.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~ 101 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 101 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHH
Confidence 3678888999998 88999999999999999999875 789999998763
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.90 E-value=0.00019 Score=72.77 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=47.7
Q ss_pred eeeeeeE--EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE-EEcCeecCCcccHHHhhccEEEEccC
Q 010435 436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFSIRSSVSMTNIQKSIGVCPQV 504 (510)
Q Consensus 436 av~~lsl--~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-~i~g~~i~~~~~~~~~r~~iG~cpQ~ 504 (510)
.||.+-= .+++|+++.|.||+|+||||++..+++...+..|.+ ++++....+ . ...+++|+.+|.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~-~ra~rlgv~~~~ 115 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---P-VYAKNLGVDLKS 115 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---H-HHHHHHTCCGGG
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---h-HHHHHcCCchhh
Confidence 4555433 589999999999999999999999999888877865 787765421 1 133456666553
No 196
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.00031 Score=63.99 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=34.6
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceE-EEcCee
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFS 484 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-~i~g~~ 484 (510)
...+|.++.|.|++||||||+.+.|++.+.+..|.+ .+++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 345789999999999999999999999988777776 455543
No 197
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.78 E-value=0.00052 Score=70.45 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=32.9
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCC-----------ccCCcceEEEcCe
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGI-----------TPVTGGDALIYGF 483 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~-----------~~pt~G~i~i~g~ 483 (510)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456778999999999999999999998 6777888887653
No 198
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.77 E-value=0.00016 Score=73.62 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=35.1
Q ss_pred eEEEeeeEEEcCCCCCcccccccCCCCCcceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce
Q 010435 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (510)
Q Consensus 406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~ 477 (510)
-+.+++|.+.|+++ .+.++.+|+| +++|++|+||||+++.|.|......|.
T Consensus 17 ~v~~~~l~~~~~~k---------------~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQVHRK---------------SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHHHTH---------------HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHhCCe---------------eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 47778888777432 4788888887 999999999999999998875554443
No 199
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.75 E-value=0.00083 Score=60.62 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=27.4
Q ss_pred EEEEecCCCCchhHHHHHHcCCc-----------cCCcceEEEcCee
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT-----------PVTGGDALIYGFS 484 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~-----------~pt~G~i~i~g~~ 484 (510)
.++++|++|+||||+++.|+|.. .+..|.+.++|..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 57899999999999999999942 2334666666644
No 200
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.70 E-value=0.0013 Score=58.24 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|++|+||||+++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999954
No 201
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.65 E-value=0.00091 Score=67.34 Aligned_cols=29 Identities=21% Similarity=0.475 Sum_probs=22.9
Q ss_pred eeeeEEEeCCcEEEEecCCCCchhHHHHHH
Q 010435 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (510)
Q Consensus 438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l 467 (510)
++..++..+ .+++|+|||||||||++..|
T Consensus 15 ~~~~i~f~~-~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEEEECCS-EEEEEECCTTSSHHHHHHHH
T ss_pred cCeEEcCCC-CeEEEECCCCCCHHHHHHHH
Confidence 344555544 58999999999999999976
No 202
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.62 E-value=0.001 Score=61.94 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=22.8
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
+.++++.+ .+++|.|+|||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 33445444 599999999999999999774
No 203
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.56 E-value=0.00071 Score=66.98 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.7
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++..++|+|++|+|||||++.|+|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 445589999999999999999999963
No 204
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.55 E-value=0.001 Score=60.63 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=26.1
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
++|+...+|.+++|.|+.||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999764
No 205
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.0004 Score=64.12 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=28.9
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
..+++|.|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 3578999999999999999998865 5667776555
No 206
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.51 E-value=0.00061 Score=67.17 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=26.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt 474 (510)
+++++||.|++||||||+.+.|.+++.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 56799999999999999999999999864
No 207
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.41 E-value=0.001 Score=69.06 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeecC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i~ 486 (510)
++.+++++|+||+|||||+..|++.+.+..+++.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 56899999999999999999999999999999998777764
No 208
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.33 E-value=0.0014 Score=60.64 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=25.8
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
+.+|.+++|.|++||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46788999999999999999999987664
No 209
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.32 E-value=0.0013 Score=60.71 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
+++|.|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 210
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.24 E-value=0.0016 Score=59.14 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=29.5
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCC---cceEEEcCee
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFS 484 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt---~G~i~i~g~~ 484 (510)
.++++.|++||||||+++.|.+.+++. -|.+..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 588999999999999999999987654 3677776644
No 211
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.19 E-value=0.00081 Score=64.04 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=39.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHc---CCccCCcceEE--------EcCeecCCcccHHHhhccEEEEcc
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQ 503 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~---G~~~pt~G~i~--------i~g~~i~~~~~~~~~r~~iG~cpQ 503 (510)
+.-+++|.||+||||||+.+.|+ |....+.|.++ -.|.+..+.....+..+.+.+.++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~ 76 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVG 76 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEe
Confidence 34589999999999999999998 66666667663 345555332234455555566553
No 212
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.15 E-value=0.0012 Score=59.79 Aligned_cols=24 Identities=46% Similarity=0.583 Sum_probs=21.7
Q ss_pred eCCcEEEEecCCCCchhHHHHHHc
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
.+|.+++|.|++||||||+.+.|+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999998
No 213
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.14 E-value=0.00046 Score=69.61 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=34.1
Q ss_pred ceeeeeeEEEeCCcE--EEEecCCCCchhHHHHHHcCCcc
Q 010435 435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 435 ~av~~lsl~v~~gei--~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478889999999998 99999999999999999998653
No 214
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.07 E-value=0.0014 Score=62.10 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=27.6
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcC---CccCCcceEE
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTG---ITPVTGGDAL 479 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G---~~~pt~G~i~ 479 (510)
-.+|.+++|.|++||||||+.++|++ ...++.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 45678999999999999999999985 4345555443
No 215
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.07 E-value=0.0028 Score=57.22 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|++|+||||+++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999963
No 216
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.98 E-value=0.0039 Score=59.00 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=23.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVTGG 476 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt~G 476 (510)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4689999999999999999997766554
No 217
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.96 E-value=0.0023 Score=61.44 Aligned_cols=40 Identities=30% Similarity=0.218 Sum_probs=32.7
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++.++.|.|++||||||+.+.|...+. .|.+.++|..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 34567899999999999999999998764 35678888665
No 218
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.88 E-value=0.0031 Score=66.84 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=40.9
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHHHHcC--CccCCcceEEEcCeecC
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDALIYGFSIR 486 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G--~~~pt~G~i~i~g~~i~ 486 (510)
.+++++.++..+.+.|.+||||||+++.|.. +..++.|++.+.+.|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4678889999999999999999999998876 66777888888777753
No 219
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.77 E-value=0.0053 Score=62.27 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=29.5
Q ss_pred cEEEEecCCCCchhHHHHHHcC-----------CccCCcceEEEcC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTG-----------ITPVTGGDALIYG 482 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G-----------~~~pt~G~i~i~g 482 (510)
..++|+|.+|+|||||++.|+| ...|+.|.+.+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 4679999999999999999998 4467778887765
No 220
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.76 E-value=0.0055 Score=55.14 Aligned_cols=36 Identities=36% Similarity=0.432 Sum_probs=28.4
Q ss_pred EEEEecCCCCchhHHHHHHcCCc----cCCcc----eEEEcCee
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT----PVTGG----DALIYGFS 484 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~----~pt~G----~i~i~g~~ 484 (510)
.++++|++|+||||+++.+++.. .||.| ++.+++..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 47899999999999999999873 66777 55555543
No 221
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.64 E-value=0.0065 Score=61.80 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=26.2
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHc
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
..++..++..+ .++.|.|+|||||||++..|.
T Consensus 15 ~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 34666777655 589999999999999999875
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.59 E-value=0.0045 Score=59.21 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=30.1
Q ss_pred eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
+++++..++| +.|.||+|+||||+.+.|++.... --+.+++.++
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~--~~~~i~~~~~ 81 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDF 81 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCSS
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC--CEEEEeHHHH
Confidence 3333444444 779999999999999999997643 2477777665
No 223
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.55 E-value=0.0013 Score=73.87 Aligned_cols=43 Identities=28% Similarity=0.296 Sum_probs=36.3
Q ss_pred eEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 441 sl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
+|.+++|+.+.|.||+|+||||+.+.|+|..... -+.++|.++
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l 274 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEI 274 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHh
Confidence 3468899999999999999999999999987643 477887665
No 224
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.51 E-value=0.0045 Score=63.33 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=31.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~ 481 (510)
.+..+.++|++||||||+++.|.+...+..+.+.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 566788999999999999999999888888888874
No 225
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.47 E-value=0.005 Score=62.23 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=35.1
Q ss_pred eeeeeeE--EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcce-EEEcCe
Q 010435 436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD-ALIYGF 483 (510)
Q Consensus 436 av~~lsl--~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~-i~i~g~ 483 (510)
.+|.+-= .+++|+++.|.|++|+||||+...++.......|. ++++..
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4555432 68899999999999999999988777655444444 566654
No 226
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.46 E-value=0.012 Score=53.03 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=27.6
Q ss_pred EEEEecCCCCchhHHHHHH-cCC----ccCCcc----eEEEcCeec
Q 010435 449 LFCLLGPNGAGKTTTISCL-TGI----TPVTGG----DALIYGFSI 485 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l-~G~----~~pt~G----~i~i~g~~i 485 (510)
.++++|..|+||||+++.+ .|. ..||.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 3679999999999999655 444 567767 667777543
No 227
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.42 E-value=0.0081 Score=67.41 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=28.4
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHH
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~ 464 (510)
+=|+||+++|++|+.+++.|.+|||||||.
T Consensus 24 hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 24 HNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 359999999999999999999999999997
No 228
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.39 E-value=0.0064 Score=58.86 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.7
Q ss_pred EEEEecCCCCchhHHHHHHcCCcc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.++|+|++|+||||+++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 578999999999999999999754
No 229
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.39 E-value=0.0019 Score=67.63 Aligned_cols=51 Identities=10% Similarity=0.197 Sum_probs=43.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcc-eEEEcCeec
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSI 485 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G-~i~i~g~~i 485 (510)
..||++...+++|+++.|.|++|+||||++..+++...+..| .+.+.+.+.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 579999989999999999999999999999999998877555 666655444
No 230
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.09 E-value=0.01 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+++|.|+.||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998653
No 231
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.98 E-value=0.011 Score=57.79 Aligned_cols=36 Identities=31% Similarity=0.288 Sum_probs=28.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCe
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~ 483 (510)
+|.++.|.|++||||||+.+.|...++ .|.+.|++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D 67 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDND 67 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEech
Confidence 346788999999999999999976543 367778763
No 232
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.97 E-value=0.01 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=22.6
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
+++.++.|.|+.||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999753
No 233
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.92 E-value=0.0041 Score=57.42 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.7
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVT 474 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt 474 (510)
+++|.|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 67899999999999999998876543
No 234
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.88 E-value=0.0064 Score=59.90 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=33.3
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+.++..+.|.||+|+||||+.+.+++... .+-+.+++.++
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l 85 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 85 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH
Confidence 456778899999999999999999999764 56777776543
No 235
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.86 E-value=0.013 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHcC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G 469 (510)
++-+++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999986
No 236
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.85 E-value=0.011 Score=53.88 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=26.2
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
.+++|.|+.||||||+.+.|+.. |-..++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 57899999999999999999875 666665543
No 237
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.83 E-value=0.014 Score=52.57 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
|.++.|.|+.||||||+.+.|.-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999997643
No 238
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.79 E-value=0.015 Score=66.03 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=28.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHH
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~ 464 (510)
+=|+|||++|++++.+++.|.+|||||||.
T Consensus 34 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 34 HNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 459999999999999999999999999985
No 239
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.79 E-value=0.015 Score=65.79 Aligned_cols=30 Identities=33% Similarity=0.590 Sum_probs=28.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHH
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~ 464 (510)
+=|+|||++|++++.+++.|.+|||||||.
T Consensus 32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 459999999999999999999999999985
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.77 E-value=0.016 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
|.++.|.|++||||||+.+.|...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5688999999999999999998754
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.75 E-value=0.015 Score=51.34 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhHHHHHH
Q 010435 449 LFCLLGPNGAGKTTTISCL 467 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l 467 (510)
+++|.|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
No 242
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.70 E-value=0.012 Score=59.29 Aligned_cols=42 Identities=21% Similarity=0.100 Sum_probs=34.0
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCC--ccC-----CcceEEEcCee
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGI--TPV-----TGGDALIYGFS 484 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~--~~p-----t~G~i~i~g~~ 484 (510)
.+++|+++.|.|++|+||||+...++.. .++ ..+.++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 6899999999999999999999988874 332 34567887765
No 243
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.58 E-value=0.017 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+|-+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998765
No 244
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.54 E-value=0.014 Score=66.17 Aligned_cols=30 Identities=33% Similarity=0.623 Sum_probs=28.5
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHH
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~ 464 (510)
+=|+|||++|++++++++.|++|||||||.
T Consensus 12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 469999999999999999999999999986
No 245
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.47 E-value=0.013 Score=52.82 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=23.0
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
.++++.|++||||||++..|.+.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987764
No 246
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.46 E-value=0.029 Score=48.95 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999873
No 247
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.44 E-value=0.013 Score=55.27 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=22.7
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
.+.+|+.+.+.|++||||||++..+..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 346899999999999999998876643
No 248
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.40 E-value=0.019 Score=55.81 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|++|+||||+++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57899999999999999999953
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.40 E-value=0.018 Score=52.69 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.4
Q ss_pred EEEecCCCCchhHHHHHHcCC
Q 010435 450 FCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~ 470 (510)
+.|.||+||||||+++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999998643
No 250
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.35 E-value=0.031 Score=55.40 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=30.4
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
..+++..+++ .|+-+.|.|++|+||||+...|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 5788888888 889999999999999999988876
No 251
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.32 E-value=0.0064 Score=63.51 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=37.1
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~ 481 (510)
+++|.+ ..+-+||..+|.|++|+|||||++.|.+......|.+.+.
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~ 185 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVF 185 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEE
Confidence 467777 7788999999999999999999999988766545555543
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.30 E-value=0.015 Score=57.84 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=33.8
Q ss_pred EEeCCcEEEEecCCCCchhHHHHHHcCCc-cC------CcceEEEcCee
Q 010435 443 NIAKDQLFCLLGPNGAGKTTTISCLTGIT-PV------TGGDALIYGFS 484 (510)
Q Consensus 443 ~v~~gei~~llG~nGaGKsTl~~~l~G~~-~p------t~G~i~i~g~~ 484 (510)
.+++|+++.|.|++|+||||+...++... .| ..+.++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 68999999999999999999998887643 33 34567887654
No 253
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.28 E-value=0.021 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
+++|.|+.||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 578999999999999999988
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.28 E-value=0.023 Score=51.13 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCchhHHHHHHcCC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
+.++.|.|+.||||||+.+.|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999999753
No 255
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.24 E-value=0.02 Score=51.36 Aligned_cols=24 Identities=33% Similarity=0.216 Sum_probs=21.6
Q ss_pred eCCcEEEEecCCCCchhHHHHHHc
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
.++.++.|.|+.||||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 356788999999999999999998
No 256
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.14 E-value=0.022 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++.|.|++||||||+.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 67899999999999999998643
No 257
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.13 E-value=0.018 Score=56.33 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=29.7
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCCcceE-EEcCe
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGF 483 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i-~i~g~ 483 (510)
..+.|.||+|+||||+.+.|++...++.|.+ .++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 5788999999999999999999988877754 44433
No 258
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.10 E-value=0.025 Score=57.09 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.9
Q ss_pred cEEEEecCCCCchhHHHHHHcCCc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
-.++++|++|+||||+++.|+|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999975
No 259
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.07 E-value=0.023 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|++|+|||||++.|+|--
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999999865
No 260
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.06 E-value=0.024 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.0
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
++|.+++|.|+.||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 261
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.06 E-value=0.026 Score=51.62 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
+|.+++|.|+.||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876544
No 262
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.06 E-value=0.023 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.7
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++.+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999753
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.04 E-value=0.021 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++.|.|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998654
No 264
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.02 E-value=0.027 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++++|+.|+||||+++.+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 6899999999999999998764
No 265
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.01 E-value=0.026 Score=51.90 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.9
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
.++|-+++|.|+.||||||+.+.|..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999999984
No 266
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.99 E-value=0.025 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEecCCCCchhHHHHHHcCCcc
Q 010435 450 FCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
++++|+.|+||||+++.++|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 68999999999999999998543
No 267
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.98 E-value=0.031 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|..|+||||+++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
No 268
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.96 E-value=0.028 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCchhHHHHHHcC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G 469 (510)
+.+++|.|+.||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999998864
No 269
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.95 E-value=0.027 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.9
Q ss_pred cEEEEecCCCCchhHHHHHHcC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G 469 (510)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3678999999999999999986
No 270
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.83 E-value=0.023 Score=57.70 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.7
Q ss_pred EEEecCCCCchhHHHHHHcCC
Q 010435 450 FCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~ 470 (510)
++|+|++|+||||+++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 271
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.024 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999865
No 272
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.80 E-value=0.035 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|..|+||||+++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999864
No 273
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.79 E-value=0.022 Score=50.68 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|++|+||||+++.+++
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999985
No 274
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.74 E-value=0.03 Score=49.17 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.++|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 36899999999999999998864
No 275
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.70 E-value=0.026 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=17.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHcC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G 469 (510)
++.++.|.|+.||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
No 276
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.66 E-value=0.032 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|++-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 277
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.64 E-value=0.038 Score=48.75 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999865
No 278
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.55 E-value=0.04 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.4
Q ss_pred cEEEEecCCCCchhHHHHHHcCC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~ 470 (510)
-.++++|+.|+||||+++.+++-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999873
No 279
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.53 E-value=0.03 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|+|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998863
No 280
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.48 E-value=0.036 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.2
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++++|+.|+||||+++.++|..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6799999999999999998643
No 281
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.48 E-value=0.033 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|+.|+|||||++.|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 282
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.43 E-value=0.032 Score=49.95 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.++|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 47899999999999999998864
No 283
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.42 E-value=0.039 Score=48.81 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.6
Q ss_pred cEEEEecCCCCchhHHHHHHcC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G 469 (510)
|+++|.|..||||||..+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999975
No 284
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.40 E-value=0.025 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.1
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999997543
No 285
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.39 E-value=0.037 Score=55.67 Aligned_cols=36 Identities=33% Similarity=0.338 Sum_probs=29.7
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCC--cceEEEcCee
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVT--GGDALIYGFS 484 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt--~G~i~i~g~~ 484 (510)
++.|.||+|+||||+++.+.+...+. ..-++++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 78899999999999999999988775 3566777543
No 286
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.37 E-value=0.028 Score=48.62 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999764
No 287
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.37 E-value=0.041 Score=49.51 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.|++-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3689999999999999999873
No 288
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.32 E-value=0.058 Score=47.80 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=22.5
Q ss_pred EEEEecCCCCchhHHHHHHcC-----CccCCcce
Q 010435 449 LFCLLGPNGAGKTTTISCLTG-----ITPVTGGD 477 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G-----~~~pt~G~ 477 (510)
.++++|+.|+||||+++.+++ .+.||.|.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 41 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN 41 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc
Confidence 468999999999999999983 33555554
No 289
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.32 E-value=0.039 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3689999999999999999764
No 290
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.31 E-value=0.043 Score=50.94 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
+|-.+.|.|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999754
No 291
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.28 E-value=0.022 Score=57.14 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=30.8
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCC----cceEEEcCe
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDALIYGF 483 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt----~G~i~i~g~ 483 (510)
.+++.+.|.|++|+||||+++.+.+...+. ...+++++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 345788999999999999999999987653 346677643
No 292
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.28 E-value=0.031 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.1
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999998753
No 293
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.26 E-value=0.041 Score=50.24 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
+++|.|++||||||+.+.|++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999774
No 294
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.26 E-value=0.045 Score=48.81 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++++|+.|+||||+++.++|-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6799999999999999998854
No 295
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.24 E-value=0.04 Score=49.47 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEecCCCCchhHHHHHHcCC
Q 010435 450 FCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~ 470 (510)
++++|+.|+||||+++.|+|-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999875
No 296
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.24 E-value=0.032 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998754
No 297
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.23 E-value=0.042 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 298
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.22 E-value=0.033 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999754
No 299
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.20 E-value=0.041 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.9
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
.++..+.|.|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999999974
No 300
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.20 E-value=0.042 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999985
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.15 E-value=0.041 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCcc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
++.|.|+.||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987543
No 302
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.14 E-value=0.036 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCccC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
.++++|+.|+||||+++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3589999999999999999987653
No 303
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.062 Score=49.22 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+++
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 368999999999999998865
No 304
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.11 E-value=0.038 Score=53.38 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEecCCCCchhHHHHHHcCC
Q 010435 450 FCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~ 470 (510)
++++|+.|+||||+++.|.|.
T Consensus 11 I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998774
No 305
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.11 E-value=0.05 Score=48.62 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEecCCCCchhHHHHHHcCC
Q 010435 450 FCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~ 470 (510)
++++|+.|+||||+++.+++-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999864
No 306
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.01 E-value=0.036 Score=48.94 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 46899999999999999887643
No 307
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.99 E-value=0.047 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|+.|+||||+++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999954
No 308
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.98 E-value=0.037 Score=48.34 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3689999999999999999854
No 309
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.97 E-value=0.035 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++++|+.|+||||+++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999998643
No 310
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.95 E-value=0.048 Score=47.37 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999999975
No 311
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.94 E-value=0.048 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.1
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++++|+.|+||||+++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999987543
No 312
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.92 E-value=0.038 Score=48.70 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.0
Q ss_pred EEEecCCCCchhHHHHHHcCC
Q 010435 450 FCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~ 470 (510)
++++|+.|+||||+++.+.+-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999754
No 313
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.88 E-value=0.046 Score=52.94 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|+.|+||||+++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
No 314
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.86 E-value=0.04 Score=47.98 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=18.6
Q ss_pred EEEecCCCCchhHHHHHHcC
Q 010435 450 FCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G 469 (510)
++++|+.|+||||+++.+++
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999985
No 315
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.86 E-value=0.05 Score=50.17 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhHHHHHHc
Q 010435 449 LFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~ 468 (510)
.++|.|+.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999995
No 316
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.85 E-value=0.019 Score=60.32 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=32.6
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
.++++++.+++| +.|.||+|+||||+.+.+++.... --+.+++.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~--~f~~is~~~ 84 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV--PFFHISGSD 84 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHH
Confidence 456666667777 679999999999999999986532 234455444
No 317
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.84 E-value=0.066 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999983
No 318
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.81 E-value=0.054 Score=51.95 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
++.++.|.|+.||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999764
No 319
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.74 E-value=0.052 Score=49.51 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=25.0
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i 478 (510)
..+.|.|++|+||||+++.+........+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 5678999999999999999998776544443
No 320
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.74 E-value=0.067 Score=48.42 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.9
Q ss_pred EEEecCCCCchhHHHHHHcCC
Q 010435 450 FCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~ 470 (510)
++++|+.|+||||+++.+.+-
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999753
No 321
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.73 E-value=0.042 Score=48.94 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.|++-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
No 322
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.70 E-value=0.057 Score=52.07 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=22.8
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCCcc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G 476 (510)
..++++|.+|+||||+++.|+|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 47899999999999999999997654333
No 323
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.69 E-value=0.056 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998743
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.67 E-value=0.062 Score=49.04 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCchhHHHHHHcCC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
+-+++|.|+.||||||+.+.|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.65 E-value=0.057 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCchhHHHHHHcC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G 469 (510)
..+++|.|+.||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999874
No 326
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.62 E-value=0.044 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999863
No 327
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.60 E-value=0.051 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++++|+.|+||||+++.+++-.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCc
Confidence 6899999999999999998753
No 328
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.58 E-value=0.057 Score=56.04 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
++.++.++|++|+|||||..-|+..+....-++.+-..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4578999999999999999999987766545665543343
No 329
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.57 E-value=0.054 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|+|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999864
No 330
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.56 E-value=0.06 Score=48.42 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997543
No 331
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.56 E-value=0.038 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|+|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 56899999999999999999874
No 332
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.55 E-value=0.046 Score=47.74 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999965
No 333
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.52 E-value=0.047 Score=47.40 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=18.4
Q ss_pred EEEecCCCCchhHHHHHHcC
Q 010435 450 FCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G 469 (510)
++++|+.|+||||+++.+++
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999999975
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.50 E-value=0.06 Score=49.70 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=18.5
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999953
No 335
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.50 E-value=0.047 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3689999999999999999763
No 336
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.46 E-value=0.061 Score=48.25 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred cEEEEecCCCCchhHHHHHHcC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G 469 (510)
.+++|.|+.||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999974
No 337
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.42 E-value=0.052 Score=48.71 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.++|..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999999865
No 338
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.41 E-value=0.049 Score=47.90 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999998643
No 339
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.37 E-value=0.065 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=18.9
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++++|+.|+||||+++.|++..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999999754
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.36 E-value=0.053 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCchhHHHHHHcC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G 469 (510)
+..+.|.|+.||||||+.+.|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999974
No 341
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.34 E-value=0.05 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|..|+||||+++.|++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3679999999999999999764
No 342
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.34 E-value=0.079 Score=47.68 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36799999999999999998743
No 343
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.33 E-value=0.068 Score=47.02 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
+++|.|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.23 E-value=0.057 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
+++|.|+.||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 345
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.23 E-value=0.053 Score=48.05 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3689999999999999999853
No 346
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.22 E-value=0.063 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999753
No 347
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.21 E-value=0.046 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=18.9
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+-++||.|+.||||||+.+.|...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998744
No 348
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.21 E-value=0.052 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 46899999999999999998653
No 349
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.20 E-value=0.052 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|++..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998764
No 350
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.18 E-value=0.068 Score=48.45 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998754
No 351
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.15 E-value=0.058 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998754
No 352
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.13 E-value=0.059 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.4
Q ss_pred cEEEEecCCCCchhHHHHHHcC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G 469 (510)
.+++|.|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999864
No 353
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.02 E-value=0.058 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3689999999999999999865
No 354
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.98 E-value=0.068 Score=50.41 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=21.7
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
+.+|-.+.+.|+.||||||..+.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999986654
No 355
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.98 E-value=0.075 Score=47.14 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEecCCCCchhHHHHHHcCC
Q 010435 450 FCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~ 470 (510)
++++|+.|+||||+++.+++-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999998853
No 356
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.97 E-value=0.073 Score=48.19 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCcc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.++++|..|+||||+++.+.|-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 467999999999999999999543
No 357
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.97 E-value=0.059 Score=47.76 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.6
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+++
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999988874
No 358
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.96 E-value=0.054 Score=48.75 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+++
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 478999999999999999986
No 359
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.96 E-value=0.07 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.1
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
No 360
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.95 E-value=0.064 Score=52.59 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.||||||+++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999975
No 361
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.95 E-value=0.075 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998743
No 362
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.94 E-value=0.086 Score=48.37 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999875
No 363
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.94 E-value=0.07 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.3
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999754
No 364
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.94 E-value=0.07 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+++
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999985
No 365
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.91 E-value=0.077 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+|||||++.|+|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999853
No 366
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.91 E-value=0.14 Score=47.21 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=28.2
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
..+++..+.+ .|..+.|.|++|+||||+..-|..-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4667766665 5788999999999999999888753
No 367
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.91 E-value=0.061 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999998643
No 368
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.91 E-value=0.08 Score=48.51 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred cEEEEecCCCCchhHHHHHHcCC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~ 470 (510)
-++||.|..||||||..++|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999864
No 369
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.88 E-value=0.087 Score=48.83 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
++..+.|.||+|+||||+++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578889999999999999999876543
No 370
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.85 E-value=0.086 Score=49.07 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.++|-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999853
No 371
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.78 E-value=0.085 Score=50.04 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCchhHHHHHHcC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G 469 (510)
+-+++|.|+.||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999974
No 372
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.72 E-value=0.083 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.5
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.+.|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999863
No 373
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.72 E-value=0.11 Score=46.74 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=22.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC-----ccCCcce
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI-----TPVTGGD 477 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~-----~~pt~G~ 477 (510)
.++++|..|+||||+++.+++- +.||-|.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~ 56 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLED 56 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence 3689999999999999888653 3556554
No 374
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.69 E-value=0.093 Score=48.89 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=24.3
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
.+|..+.+.|+.||||||..+.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999765543
No 375
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.68 E-value=0.061 Score=48.49 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.3
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3689999999999999999753
No 376
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.66 E-value=0.069 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999999874
No 377
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.64 E-value=0.085 Score=48.44 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|+|-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999998643
No 378
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.63 E-value=0.068 Score=48.06 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3679999999999999999864
No 379
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.59 E-value=0.063 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 46799999999999999998754
No 380
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.57 E-value=0.084 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+|||||++.|+|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999864
No 381
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.56 E-value=0.088 Score=50.09 Aligned_cols=23 Identities=17% Similarity=0.318 Sum_probs=20.4
Q ss_pred cEEEEecCCCCchhHHHHHHcCC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~ 470 (510)
-+++|.|+.||||||+.+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999763
No 382
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.54 E-value=0.07 Score=48.35 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++|+|.+|+||||+++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999986
No 383
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.49 E-value=0.041 Score=57.12 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=30.2
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
.+++++|++|+|||||...|++.+.....++.+-..|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 58899999999999999999998775545666554443
No 384
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.46 E-value=0.066 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.|++-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999864
No 385
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.45 E-value=0.092 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.1
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999864
No 386
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.44 E-value=0.021 Score=64.11 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=36.8
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCeec
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~i 485 (510)
..++.+.+++.+.|.||+|+||||+.+.|++... .+-+.+++.++
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 3466788999999999999999999999999874 45666776665
No 387
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.44 E-value=0.072 Score=47.72 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999999974
No 388
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.068 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 36799999999999999998754
No 389
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.42 E-value=0.073 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+++
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999999985
No 390
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.37 E-value=0.088 Score=46.49 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999854
No 391
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.37 E-value=0.093 Score=48.12 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|++-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998754
No 392
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.35 E-value=0.075 Score=47.53 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999999864
No 393
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.31 E-value=0.075 Score=47.96 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
No 394
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.31 E-value=0.076 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 46899999999999999997643
No 395
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.31 E-value=0.088 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3689999999999999999874
No 396
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.17 E-value=0.067 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=8.8
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999998754
No 397
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.17 E-value=0.096 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999763
No 398
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.16 E-value=0.086 Score=49.33 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.2
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
++..++.|+||.||||+|..+.|+-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446888999999999999998874
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.11 E-value=0.1 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCchhHHHHHHcCC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
|-.+.|.|+.||||||..+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999653
No 400
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.09 E-value=0.094 Score=47.86 Aligned_cols=30 Identities=23% Similarity=0.113 Sum_probs=21.9
Q ss_pred EEEEecCCCCchhHHHHHHcC-----CccCCcceE
Q 010435 449 LFCLLGPNGAGKTTTISCLTG-----ITPVTGGDA 478 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G-----~~~pt~G~i 478 (510)
.++++|+.|+||||+++.+++ ...|+.|..
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~ 66 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN 66 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce
Confidence 467999999999999977663 445555543
No 401
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.07 E-value=0.11 Score=49.26 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
+|..+.+.|+.||||||..+.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999998776543
No 402
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.06 E-value=0.11 Score=47.40 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999854
No 403
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.03 E-value=0.13 Score=51.37 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
++.++.|+||+|+||||+...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998663
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.02 E-value=0.1 Score=48.17 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=18.4
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++|.|+.||||||..+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999864
No 405
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.01 E-value=0.084 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999854
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.97 E-value=0.099 Score=50.79 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.7
Q ss_pred cEEEEecCCCCchhHHHHHHc
Q 010435 448 QLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~ 468 (510)
-+++|.|+.||||||+.+.|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 407
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.94 E-value=0.067 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|..|+||||+++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999998864
No 408
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.90 E-value=0.095 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|..|+||||+++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999965
No 409
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.87 E-value=0.16 Score=45.82 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.8
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
..++...+.+ .|.-+.|.|++|+||||+...|..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3555555554 578889999999999999876653
No 410
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.87 E-value=0.1 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++..+.|.||+|+||||+.+.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34577899999999999999999865
No 411
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.82 E-value=0.12 Score=48.13 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
+|..+.+-|+.||||||.++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4778999999999999999999876643
No 412
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.79 E-value=0.084 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 413
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.77 E-value=0.066 Score=59.79 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=26.9
Q ss_pred EeCCcEEEEecCCCCchhHHHHHHcCCccCCc
Q 010435 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (510)
Q Consensus 444 v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~ 475 (510)
+..|+.+.+.|||||||||++.++.+...+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 56789999999999999999999877655544
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.70 E-value=0.13 Score=48.15 Aligned_cols=26 Identities=42% Similarity=0.438 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++..+.|.|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999997543
No 415
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.70 E-value=0.12 Score=48.22 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=25.8
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
.+|..+.+.|+.||||||..+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999887765
No 416
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.66 E-value=0.092 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 417
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.33 E-value=0.065 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=3.8
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999988876
No 418
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.31 E-value=0.13 Score=47.60 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++|+|..|+||||+++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 419
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.28 E-value=0.12 Score=47.60 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCchhHHHHHHcCC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
+.+++|.|+.||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999998764
No 420
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.27 E-value=0.12 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++|+|.+|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999999984
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.18 E-value=0.12 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.9
Q ss_pred cEEEEecCCCCchhHHHHHHcCCcc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
-+++|+|+.|+||||+++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999987653
No 422
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.17 E-value=0.13 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999874
No 423
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.16 E-value=0.1 Score=46.83 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999854
No 424
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.05 E-value=0.081 Score=52.20 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.0
Q ss_pred cEEEEecCCCCchhHHHHHHcCCccCCcce-EEEcC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGD-ALIYG 482 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~pt~G~-i~i~g 482 (510)
..+.|.||+|+||||+++.+.+........ ++++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 456799999999999999999877554332 34443
No 425
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.00 E-value=0.17 Score=47.58 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.0
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.+|..+.+-|+.||||||..+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3577899999999999999999987554
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.96 E-value=0.14 Score=47.24 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999888654
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.86 E-value=0.15 Score=49.57 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.7
Q ss_pred cEEEEecCCCCchhHHHHHHcC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G 469 (510)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999975
No 428
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.84 E-value=0.19 Score=46.24 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=23.0
Q ss_pred EEEEecCCCCchhHHHHHHcCC-----ccCCcceE
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI-----TPVTGGDA 478 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~-----~~pt~G~i 478 (510)
.++++|..|+||||+++.+++- +.||-|.-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~ 63 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN 63 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeee
Confidence 3679999999999999998764 34555543
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.80 E-value=0.17 Score=50.04 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+.+++|.||+|+||||+...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 430
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.68 E-value=0.15 Score=46.11 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.1
Q ss_pred CCcEEEEecCCCCchhHHH-HHH
Q 010435 446 KDQLFCLLGPNGAGKTTTI-SCL 467 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~-~~l 467 (510)
+|++..+.|+.|+||||++ +++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999997 555
No 431
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.67 E-value=0.16 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.8
Q ss_pred cEEEEecCCCCchhHHHHHHcCCcc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.+++|.||+||||||+.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3789999999999999999887654
No 432
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.63 E-value=0.19 Score=44.43 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.3
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+..+.|.|+.|+||||+++.+....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999888765
No 433
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.61 E-value=0.2 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCcc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.++++|.+|+||||++|.|+|...
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred eEEEEecCCCchHHHHHHHhcCce
Confidence 578999999999999999998653
No 434
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.60 E-value=0.071 Score=53.42 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=39.5
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
..||.+.-.+++|+.+.|.|++|+||||+..-++.......+.+.+-..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 57888877899999999999999999999888877655445566554333
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.56 E-value=0.18 Score=51.98 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=26.9
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
.+.+++.|.|++||||||+.+.|...+ |-..++..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D~ 291 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDT 291 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccch
Confidence 345789999999999999999987543 445554433
No 436
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.54 E-value=0.13 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3689999999999999999864
No 437
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.53 E-value=0.15 Score=51.50 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=35.9
Q ss_pred ceeeeee--EEEeCCcEEEEecCCCCchhHHHHHHcCCccC-CcceEEEcCee
Q 010435 435 HAIKGLW--VNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGFS 484 (510)
Q Consensus 435 ~av~~ls--l~v~~gei~~llG~nGaGKsTl~~~l~G~~~p-t~G~i~i~g~~ 484 (510)
..||.+- =.+++|+++.|.|++|+||||+...++..... ...-++++...
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3566652 14899999999999999999998777754432 23456777643
No 438
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.53 E-value=0.12 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.3
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++|+.|+||||+++.+++-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 3689999999999999999754
No 439
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.50 E-value=0.17 Score=47.56 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+|..+++-|..||||||+.+.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999998554
No 440
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.43 E-value=0.15 Score=48.68 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.3
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+++-.++|.|..||||||+.+.|...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 466789999999999999999998765
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.32 E-value=0.19 Score=46.56 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
++.|+||.||||+|..+.|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999988863
No 442
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.18 E-value=0.17 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+++
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999975
No 443
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.13 E-value=0.21 Score=49.31 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=27.4
Q ss_pred eeeeee-EEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 436 av~~ls-l~v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
.+|.+- =.+++|+++.|.|++|+||||+...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444442 2689999999999999999999987764
No 444
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.08 E-value=0.077 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+||||+++.|++..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998854
No 445
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=89.03 E-value=0.18 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++|+|..++||||+++.|+|--
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 6899999999999999999864
No 446
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.97 E-value=0.11 Score=51.42 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=31.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
..||++.-.+++|+++.|.|++|+||||+...++..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 578888878999999999999999999998777643
No 447
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=88.93 E-value=0.19 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+|||||++.|+|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 47899999999999999999954
No 448
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=88.79 E-value=0.23 Score=49.69 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=27.0
Q ss_pred eeeeEEEeCCcEEEEecCCCCchhHHHHHHcCC
Q 010435 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 438 ~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
+.+.++++.---++|+|..+||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 556666665556899999999999999999975
No 449
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.79 E-value=0.2 Score=49.71 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.2
Q ss_pred cEEEEecCCCCchhHHHHHHcCCc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++.|.||+|+||||+.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378899999999999999998755
No 450
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.78 E-value=0.17 Score=48.71 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=23.5
Q ss_pred eCCcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.++..+.|.||.|+||||+.+.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4455688999999999999999988653
No 451
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.67 E-value=0.064 Score=53.24 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=27.5
Q ss_pred eeeeeeEEEeCC--cEEEEecCCCCchhHHHHHHcCCcc
Q 010435 436 AIKGLWVNIAKD--QLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 436 av~~lsl~v~~g--ei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
+++.+.-.+..| ..+.|.||+|+||||+.+.+++.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 444444444455 3488999999999999999998764
No 452
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.27 E-value=0.26 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCcc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
.+.|.|+.|+||||+++.+.....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999976553
No 453
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.97 E-value=0.27 Score=48.48 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.0
Q ss_pred cEEEEecCCCCchhHHHHHHcCCc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++.|.||+|+||||+...|+..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 478899999999999999998654
No 454
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.77 E-value=0.28 Score=46.31 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.1
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
...+.|.||.|+||||+.+.++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999998754
No 455
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=87.75 E-value=0.5 Score=46.55 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=30.6
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g 482 (510)
..+++.-+++ .|.-+.|.|++|+||||+.-.|.. .|.-.+..
T Consensus 136 ~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~-----~G~~lv~D 177 (312)
T 1knx_A 136 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN-----KNHLFVGD 177 (312)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT-----TTCEEEEE
T ss_pred ceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH-----cCCEEEeC
Confidence 5677765555 577889999999999998766643 45555543
No 456
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.73 E-value=0.23 Score=43.76 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
+..+.|.|+.|+||||+++.+......
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999998876543
No 457
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.58 E-value=0.1 Score=47.38 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.5
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.++++|+.|+||||+++.+++
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 368999999999999988775
No 458
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=87.65 E-value=0.23 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|..|+|||||++.|+|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999953
No 459
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.54 E-value=0.26 Score=52.02 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=20.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
+..+++++|++|+|||||+.-|+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999943
No 460
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.51 E-value=0.19 Score=52.15 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=27.6
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccC---CcceEEEcCe
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGF 483 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~p---t~G~i~i~g~ 483 (510)
+..+.|.||+|+||||+++.+.+.... ..--++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 457889999999999999999987632 2334555543
No 461
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=87.38 E-value=0.28 Score=51.17 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=30.5
Q ss_pred EEEeCCcEEEEecCCCCchhHHHHHHcCCccCCcceEEE
Q 010435 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480 (510)
Q Consensus 442 l~v~~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i 480 (510)
+.+-+||..+|.|+.|+|||||+.+|+.-.....+.+.|
T Consensus 148 ~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V 186 (482)
T 2ck3_D 148 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 186 (482)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEE
T ss_pred cccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEE
Confidence 578999999999999999999999887754333333443
No 462
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=87.28 E-value=0.29 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++||.++|||||++.|+|..
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999753
No 463
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=87.26 E-value=0.18 Score=46.47 Aligned_cols=27 Identities=44% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEecCCCCchhHHHHH-HcCC----ccCCcc
Q 010435 450 FCLLGPNGAGKTTTISC-LTGI----TPVTGG 476 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~-l~G~----~~pt~G 476 (510)
++++|+.|+||||+++. +.|. +.|+.|
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~ 49 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHHHTCEEETTTT
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence 67999999999999998 5553 345555
No 464
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.26 E-value=0.37 Score=44.95 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=25.2
Q ss_pred eeeeeeE-EEeCCcEEEEecCCCCchhHHHHHH
Q 010435 436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCL 467 (510)
Q Consensus 436 av~~lsl-~v~~gei~~llG~nGaGKsTl~~~l 467 (510)
.||.+-= .+++|+++.|.|+.|+||||+.--+
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHH
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 3444432 5899999999999999999997544
No 465
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=87.24 E-value=0.23 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|..|+||||+++.|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
No 466
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.20 E-value=0.28 Score=46.22 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=18.6
Q ss_pred EEEEecCCCCchhHHHHHHcC
Q 010435 449 LFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G 469 (510)
.+||+|+.||||||..+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 479999999999999998854
No 467
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=87.07 E-value=0.22 Score=50.39 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
++..++++|..|+||||++|.|+|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667899999999999999999986
No 468
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=86.68 E-value=0.32 Score=49.47 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=28.6
Q ss_pred eeeEEEeCCcEEEEecCCCCchhHHHHHHcCCc
Q 010435 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 439 ~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
|.=+.+-+||..+|.|+.|+||||++.+|+...
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 344678999999999999999999999888754
No 469
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=86.65 E-value=0.35 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++|+|..|+||||+++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999997765
No 470
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=86.60 E-value=0.21 Score=52.17 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=28.4
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCcc-------CC-----cceEEEcCeec
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITP-------VT-----GGDALIYGFSI 485 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~-------pt-----~G~i~i~g~~i 485 (510)
|=.++|+|+.|+|||||++.|+|... .+ ...+.++|.++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v 274 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPV 274 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEE
Confidence 33489999999999999999987521 11 13567787654
No 471
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.40 E-value=0.33 Score=41.81 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
+.-+-|.|+.|+|||++.+.|......
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 345679999999999999999876544
No 472
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=86.23 E-value=0.31 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.2
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|..|+||||+++.|.|.-
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999964
No 473
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=86.13 E-value=0.24 Score=50.09 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCC
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~ 470 (510)
++..++++|..|+||||++|.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5677899999999999999999985
No 474
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=85.95 E-value=0.37 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++||.++|||||++.|+|..
T Consensus 10 ~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 10 NIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp EEEEESCTTSSHHHHHHHHHSCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999764
No 475
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=85.80 E-value=0.35 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.729 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++++|+.|+|||||++.|+|..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 476
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=85.64 E-value=0.41 Score=45.22 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEecCCCCchhHHHHHHcCCcc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
-++.+.|.-|+||||+++.|+..+.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4778999999999999999985544
No 477
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.56 E-value=0.44 Score=43.92 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.3
Q ss_pred cEEEEecCCCCchhHHHHHHcCCcc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
..+++=|.-||||||..+.|.-.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4577889999999999999987664
No 478
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=85.55 E-value=0.32 Score=49.69 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++||.|+|||||++.|++.
T Consensus 13 ~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 13 NVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHhh
Confidence 5789999999999999999874
No 479
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.25 E-value=0.41 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.7
Q ss_pred cEEEEecCCCCchhHHHHHHcCCc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.+++|.||+|+||||+...|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 368899999999999999887654
No 480
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=85.01 E-value=0.36 Score=49.27 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++++||.|+|||||++.|++.
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhCh
Confidence 4789999999999999999984
No 481
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.94 E-value=0.36 Score=48.10 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=29.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccC-------CcceEEEcCee
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPV-------TGGDALIYGFS 484 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~p-------t~G~i~i~g~~ 484 (510)
.+..+.|.||.|+||||+++.+...... ....++++..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 3457789999999999999999887643 23456676543
No 482
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.76 E-value=0.15 Score=48.61 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.2
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+.|.||.|+||||+.+.+++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5688999999999999998743
No 483
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=84.70 E-value=0.42 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.6
Q ss_pred cEEEEecCCCCchhHHHHHHcCCc
Q 010435 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
-+++++|+.|+|||||+|.|+|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 467899999999999999999964
No 484
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=84.65 E-value=0.43 Score=50.71 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
++|+|..|+||||+++.++|-.
T Consensus 44 V~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 44 VHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEESSSCSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999999864
No 485
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=84.64 E-value=0.38 Score=47.71 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhHHHHHHcCCc
Q 010435 449 LFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~ 471 (510)
.++|+|+.|+|||||++.+++-.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC
T ss_pred eEEEECCCCccHHHHHHHHhCCC
Confidence 47899999999999999998754
No 486
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=84.45 E-value=0.35 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
.++|+|+.|+|||||++.|+|.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 487
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=84.34 E-value=0.36 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.0
Q ss_pred cEEEEecCCCCchhHHHHHHcC
Q 010435 448 QLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~G 469 (510)
-.++++||.|+|||||++.|++
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 4689999999999999999985
No 488
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.30 E-value=0.27 Score=51.01 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=33.4
Q ss_pred ceeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 435 ~av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
..||.+.-.+++|+++.|.|++|+||||+..-++.....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468888777999999999999999999998888776543
No 489
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=84.05 E-value=0.39 Score=51.63 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=28.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEc
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~ 481 (510)
.+.++.|.|+.|+||||+++.|...+......|.+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 467999999999999999999987665544555543
No 490
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=83.81 E-value=0.47 Score=50.43 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=19.1
Q ss_pred cEEEEecCCCCchhHHHHHHc
Q 010435 448 QLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 448 ei~~llG~nGaGKsTl~~~l~ 468 (510)
..++|+||.|||||||++.|+
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999995
No 491
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.81 E-value=0.54 Score=48.65 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=22.5
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCccC
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITPV 473 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~p 473 (510)
..+++++|++|+||||+..-|+..+.-
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458889999999999999999865543
No 492
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=83.70 E-value=0.43 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHcCC
Q 010435 449 LFCLLGPNGAGKTTTISCLTGI 470 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~ 470 (510)
+++++||.|+|||||++.|.|.
T Consensus 7 ~V~IvGh~d~GKTTLl~~L~~~ 28 (594)
T 1g7s_A 7 IVSVLGHVDHGKTTLLDHIRGS 28 (594)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 6889999999999999999864
No 493
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.70 E-value=0.57 Score=46.63 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=30.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHcCCccCCcceEEEcCee
Q 010435 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS 484 (510)
Q Consensus 446 ~gei~~llG~nGaGKsTl~~~l~G~~~pt~G~i~i~g~~ 484 (510)
+|..+-|.||.|+||||+.+.++.........+.+++..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 356788999999999999999998876554556666543
No 494
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=83.66 E-value=0.42 Score=48.44 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=29.1
Q ss_pred EEEEecCCCCchhHHHHHHcCCcc-----------CCcceEEEcCeec
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITP-----------VTGGDALIYGFSI 485 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~-----------pt~G~i~i~g~~i 485 (510)
-+||+|..-+|||||+|.|||--. |..|.+.+.|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 479999999999999999999642 2347777777543
No 495
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.40 E-value=0.63 Score=45.71 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.8
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCcc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~~ 472 (510)
++.+-|.||.|+|||+++..|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57888999999999999999987655
No 496
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.29 E-value=0.32 Score=50.61 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.3
Q ss_pred EEEEecCCCCchhHHHHHHcCCccCCcceE
Q 010435 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDA 478 (510)
Q Consensus 449 i~~llG~nGaGKsTl~~~l~G~~~pt~G~i 478 (510)
.+.|.||.|+||||+.+.|+......-..+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 477999999999999999999876543333
No 497
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.23 E-value=0.59 Score=45.29 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCchhHHHHHHcCCc
Q 010435 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 447 gei~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+..+.|.||.|+||||+.+.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999998777655
No 498
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.22 E-value=0.56 Score=42.28 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEecCCCCchhHHHHHHcCCc
Q 010435 450 FCLLGPNGAGKTTTISCLTGIT 471 (510)
Q Consensus 450 ~~llG~nGaGKsTl~~~l~G~~ 471 (510)
+.|.|+.|+||||+.+.+....
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999988654
No 499
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=83.09 E-value=0.57 Score=42.72 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.6
Q ss_pred eCCcEEEEecCCCCchhHHHHHHc
Q 010435 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (510)
Q Consensus 445 ~~gei~~llG~nGaGKsTl~~~l~ 468 (510)
.+|++..+.|+-|+||||++--+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a 29 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRI 29 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHH
Confidence 457899999999999998765443
No 500
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=83.06 E-value=0.72 Score=45.73 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=27.5
Q ss_pred eeeeeeEEEeCCcEEEEecCCCCchhHHHHHHcC
Q 010435 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (510)
Q Consensus 436 av~~lsl~v~~gei~~llG~nGaGKsTl~~~l~G 469 (510)
.+|.+--.+.+|.++.|.|+.|+||||+...++.
T Consensus 112 ~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3444334788999999999999999999988864
Done!