Query 010437
Match_columns 510
No_of_seqs 306 out of 963
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 00:31:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1.6E-55 3.4E-60 440.7 25.2 278 183-501 33-342 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 2.7E-51 5.9E-56 392.4 13.8 189 230-426 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1.2E-47 2.6E-52 364.9 21.0 171 242-429 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.9 2.8E-07 6.2E-12 94.7 22.1 237 218-472 1-286 (314)
5 PF14592 Chondroitinas_B: Chon 98.2 1.8E-05 4E-10 84.7 14.3 183 217-405 6-234 (425)
6 PF13229 Beta_helix: Right han 98.0 6.5E-05 1.4E-09 66.0 10.7 133 266-430 2-138 (158)
7 PLN02218 polygalacturonase ADP 98.0 0.00022 4.8E-09 76.8 16.4 138 264-426 215-356 (431)
8 PLN02155 polygalacturonase 97.8 0.00058 1.2E-08 72.9 16.0 138 264-426 168-310 (394)
9 PLN02188 polygalacturonase/gly 97.8 0.00077 1.7E-08 72.1 16.6 124 264-408 178-307 (404)
10 PLN02793 Probable polygalactur 97.7 0.00083 1.8E-08 72.7 15.8 108 264-392 200-308 (443)
11 PF00295 Glyco_hydro_28: Glyco 97.6 0.00068 1.5E-08 70.1 13.2 152 224-410 89-244 (326)
12 PLN03003 Probable polygalactur 97.6 0.0012 2.7E-08 71.7 15.4 122 266-408 163-288 (456)
13 PLN02218 polygalacturonase ADP 97.5 0.0045 9.7E-08 66.9 17.8 119 227-381 147-284 (431)
14 PLN03010 polygalacturonase 97.5 0.0057 1.2E-07 65.8 18.3 114 306-427 205-322 (409)
15 PF01696 Adeno_E1B_55K: Adenov 97.5 0.0067 1.4E-07 64.8 18.3 175 218-431 57-242 (386)
16 TIGR03805 beta_helix_1 paralle 97.5 0.0032 6.9E-08 65.1 15.6 160 247-411 62-247 (314)
17 PF12708 Pectate_lyase_3: Pect 97.4 0.0048 1E-07 57.9 14.5 41 217-258 20-63 (225)
18 PF05048 NosD: Periplasmic cop 97.4 0.0086 1.9E-07 58.1 16.7 107 266-405 59-167 (236)
19 TIGR03808 RR_plus_rpt_1 twin-a 97.4 0.0061 1.3E-07 66.2 16.8 100 217-333 56-161 (455)
20 PF13229 Beta_helix: Right han 97.3 0.0023 4.9E-08 56.2 10.6 131 264-426 23-158 (158)
21 PLN03003 Probable polygalactur 97.2 0.0057 1.2E-07 66.6 13.8 118 228-381 105-230 (456)
22 PF05048 NosD: Periplasmic cop 97.0 0.021 4.6E-07 55.4 14.8 131 265-429 36-168 (236)
23 PLN02155 polygalacturonase 97.0 0.012 2.7E-07 62.9 13.7 117 228-381 107-237 (394)
24 PF00295 Glyco_hydro_28: Glyco 96.8 0.011 2.5E-07 61.1 11.7 108 244-381 62-184 (326)
25 PLN03010 polygalacturonase 96.8 0.023 5E-07 61.2 14.2 157 244-432 141-313 (409)
26 PLN02793 Probable polygalactur 96.8 0.026 5.6E-07 61.3 14.5 118 228-381 135-269 (443)
27 TIGR03808 RR_plus_rpt_1 twin-a 96.7 0.048 1E-06 59.4 15.9 159 249-428 121-332 (455)
28 PLN02480 Probable pectinestera 96.7 0.034 7.4E-07 58.7 14.4 119 217-353 62-198 (343)
29 PF04431 Pec_lyase_N: Pectate 96.5 0.0011 2.4E-08 53.0 1.3 29 119-147 15-43 (56)
30 PLN02188 polygalacturonase/gly 96.4 0.043 9.3E-07 59.0 13.0 118 228-381 114-247 (404)
31 PF07602 DUF1565: Protein of u 96.2 0.14 3.1E-06 51.9 14.7 186 217-427 17-240 (246)
32 COG5434 PGU1 Endopygalactoruna 96.0 0.11 2.3E-06 58.1 13.7 104 265-392 262-376 (542)
33 PLN02197 pectinesterase 95.9 0.34 7.3E-06 54.7 17.2 152 170-350 244-442 (588)
34 smart00656 Amb_all Amb_all dom 95.3 0.52 1.1E-05 45.6 14.1 137 246-405 43-188 (190)
35 PLN02176 putative pectinestera 94.4 0.71 1.5E-05 48.9 13.3 120 217-353 53-189 (340)
36 PLN02432 putative pectinestera 94.3 0.61 1.3E-05 48.5 12.3 113 217-353 25-154 (293)
37 PLN02416 probable pectinestera 94.2 0.46 1E-05 53.1 12.0 98 217-334 244-362 (541)
38 COG3420 NosD Nitrous oxidase a 94.2 1.2 2.6E-05 47.5 14.1 93 244-352 100-192 (408)
39 PLN02304 probable pectinestera 93.9 1.1 2.3E-05 48.3 13.4 120 217-353 89-228 (379)
40 PLN02773 pectinesterase 93.7 1.1 2.3E-05 47.2 12.9 99 217-335 19-148 (317)
41 PLN02170 probable pectinestera 93.7 0.67 1.4E-05 51.8 12.0 99 217-334 239-358 (529)
42 PLN02916 pectinesterase family 93.4 1.1 2.3E-05 50.0 12.9 99 217-334 201-322 (502)
43 PLN02665 pectinesterase family 93.4 2.6 5.7E-05 45.2 15.3 118 217-352 82-219 (366)
44 PLN02506 putative pectinestera 93.3 0.77 1.7E-05 51.4 11.6 99 217-334 246-364 (537)
45 PLN02682 pectinesterase family 93.2 1.5 3.3E-05 47.0 13.2 119 217-353 84-229 (369)
46 PLN02933 Probable pectinestera 93.2 1.2 2.5E-05 49.9 12.8 98 217-334 232-350 (530)
47 PLN03043 Probable pectinestera 93.1 2.3 5E-05 47.7 15.0 115 217-351 237-392 (538)
48 PLN02708 Probable pectinestera 93.0 1 2.2E-05 50.6 12.2 115 217-351 255-409 (553)
49 PLN02745 Putative pectinestera 92.9 1.4 2.9E-05 50.1 13.0 98 217-334 299-417 (596)
50 PLN02201 probable pectinestera 92.7 1.3 2.9E-05 49.4 12.4 100 217-335 220-339 (520)
51 PLN02484 probable pectinestera 92.6 1.4 3.1E-05 49.8 12.7 117 217-351 286-439 (587)
52 PLN02313 Pectinesterase/pectin 92.6 2.6 5.7E-05 47.7 14.7 115 217-351 289-441 (587)
53 PLN02995 Probable pectinestera 92.5 1.5 3.3E-05 49.1 12.7 99 217-335 237-358 (539)
54 PLN02488 probable pectinestera 92.4 1.5 3.1E-05 49.0 12.1 116 217-351 211-363 (509)
55 PLN02497 probable pectinestera 92.3 2.2 4.8E-05 45.2 12.8 120 217-352 46-182 (331)
56 PLN02217 probable pectinestera 92.1 3.5 7.7E-05 47.4 15.1 144 217-381 264-450 (670)
57 PLN02990 Probable pectinestera 92.1 4.7 0.0001 45.6 15.8 116 217-351 273-426 (572)
58 PLN02671 pectinesterase 91.8 2.9 6.3E-05 44.8 13.2 119 217-353 73-219 (359)
59 PF01095 Pectinesterase: Pecti 91.7 1.4 3.1E-05 45.6 10.5 123 217-362 14-156 (298)
60 PLN02314 pectinesterase 91.7 3.8 8.3E-05 46.4 14.6 115 217-351 292-444 (586)
61 PLN02301 pectinesterase/pectin 91.5 1.7 3.7E-05 48.8 11.6 99 217-334 250-368 (548)
62 PLN02634 probable pectinestera 91.4 3.7 7.9E-05 44.0 13.4 119 217-353 70-215 (359)
63 PF14592 Chondroitinas_B: Chon 91.1 1.4 3.1E-05 48.0 10.1 115 307-432 183-325 (425)
64 PLN02713 Probable pectinestera 90.9 2.3 5.1E-05 47.9 11.9 114 217-350 264-418 (566)
65 PLN02468 putative pectinestera 90.7 2.5 5.3E-05 47.7 11.8 114 217-350 272-423 (565)
66 PF00544 Pec_lyase_C: Pectate 89.6 3.6 7.7E-05 40.1 10.7 117 263-403 74-200 (200)
67 PRK10531 acyl-CoA thioesterase 88.0 13 0.00029 40.7 14.6 104 217-335 96-256 (422)
68 COG3420 NosD Nitrous oxidase a 87.7 8.1 0.00018 41.5 12.3 132 242-395 45-197 (408)
69 PF08480 Disaggr_assoc: Disagg 86.4 6.7 0.00014 38.8 10.1 88 341-430 2-110 (198)
70 COG5434 PGU1 Endopygalactoruna 84.4 3.7 8E-05 46.2 8.3 130 225-380 236-395 (542)
71 PF12708 Pectate_lyase_3: Pect 81.2 29 0.00063 32.4 12.0 48 275-337 94-141 (225)
72 PF03211 Pectate_lyase: Pectat 68.4 42 0.00091 33.8 9.8 50 305-355 93-143 (215)
73 COG3866 PelB Pectate lyase [Ca 66.8 22 0.00047 37.8 7.7 120 307-429 115-251 (345)
74 PF07172 GRP: Glycine rich pro 58.6 7.3 0.00016 34.3 2.2 18 66-84 1-18 (95)
75 TIGR03804 para_beta_helix para 53.0 21 0.00046 26.0 3.6 41 310-352 1-41 (44)
76 PF11770 GAPT: GRB2-binding ad 46.0 15 0.00033 35.2 2.3 29 29-57 8-36 (158)
77 PF07602 DUF1565: Protein of u 41.9 1.1E+02 0.0023 31.5 7.7 89 247-358 96-193 (246)
78 PF12541 DUF3737: Protein of u 37.0 1.6E+02 0.0035 30.8 8.2 17 269-285 15-31 (277)
79 PF07822 Toxin_13: Neurotoxin 36.6 5.7 0.00012 31.2 -1.7 22 163-184 20-42 (55)
80 PF08480 Disaggr_assoc: Disagg 35.5 4.7E+02 0.01 26.2 11.9 71 316-387 33-112 (198)
81 PF12541 DUF3737: Protein of u 32.3 5.5E+02 0.012 27.1 11.1 31 371-405 194-224 (277)
82 PRK10123 wcaM putative colanic 31.6 86 0.0019 33.5 5.3 49 271-330 266-314 (464)
83 PF07803 GSG-1: GSG1-like prot 25.6 59 0.0013 30.0 2.6 34 29-62 8-41 (118)
84 PF15183 MRAP: Melanocortin-2 25.6 83 0.0018 27.6 3.3 32 57-88 28-59 (90)
85 PF03908 Sec20: Sec20; InterP 23.7 45 0.00098 28.5 1.5 20 38-57 72-91 (92)
86 TIGR03804 para_beta_helix para 23.7 1.6E+02 0.0036 21.3 4.2 42 266-329 1-42 (44)
87 PF06196 DUF997: Protein of un 23.1 2.1E+02 0.0045 24.6 5.3 48 35-83 9-56 (80)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=440.67 Aligned_cols=278 Identities=31% Similarity=0.352 Sum_probs=226.6
Q ss_pred ccccccc-------ccccCCCCeEEEEcCCCCCCCCCCCCchhhhhhcCCCCeEEEEeeeeEEEeC------ceEEecCC
Q 010437 183 CGIGFGR-------NAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLK------QELIVNSF 249 (510)
Q Consensus 183 ~A~GFG~-------~ttGGrgG~vy~VTnl~Ddd~vnp~pGTLR~Av~q~~Pr~IVF~~sg~I~L~------~~L~I~Sn 249 (510)
..+||+. +||||.+|.+++|++.+| |..+++..+|.++|.-+.|+|.+. .+|.+.||
T Consensus 33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sN 102 (345)
T COG3866 33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSN 102 (345)
T ss_pred cccccccccCCCCCCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccc
Confidence 3566665 689999999999999999 899999999995566667889887 56788999
Q ss_pred eEEEeeCcceEEecCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEe-eCCceEEEEeeeeeC
Q 010437 250 KTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISI-FGSSHIWIDHNSLSH 328 (510)
Q Consensus 250 kTI~GqGA~~~I~~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI-~gs~nVWIDHCSfS~ 328 (510)
|||.|.|++++|. |++|+|+.+.|||||||+|++...++ | ..|+|+| .+++|||||||+|+.
T Consensus 103 kTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~~~d------------~----~~D~Isi~~~~~nIWIDH~tf~~ 165 (345)
T COG3866 103 KTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFYQGD------------P----NYDAISIYDDGHNIWIDHNTFSG 165 (345)
T ss_pred cEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeeccCC------------C----CCCcEEeccCCeEEEEEeeEecc
Confidence 9999999999997 88999999999999999999864221 1 2699999 679999999999999
Q ss_pred --------CCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCc-cCCCcceEEEEEeeecCCCcCCCceeecceEEEE
Q 010437 329 --------CADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSY-TRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVV 399 (510)
Q Consensus 329 --------~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~-~~D~~~~VTihhN~F~~~~~qR~PRvR~G~~HVv 399 (510)
..||++|+++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +|+.||+||+|||.+||+
T Consensus 166 ~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvy 244 (345)
T COG3866 166 GSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVY 244 (345)
T ss_pred ccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEe
Confidence 7899999999999999999999999999999999984 457899999999999 799999999999999999
Q ss_pred cceecCCc--ceeeecCCCceeEEeccEEeCCCCcccccccccccccccccCCCeeeccCceEeeCeEEecCCCC-----
Q 010437 400 NNDYTHWE--MYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPSGAG----- 472 (510)
Q Consensus 400 NN~y~nw~--~YAIGgs~~~tI~seGNyF~a~~~~~~kevTkr~~~~~~~w~~w~w~s~GD~~lNGa~f~~Sg~~----- 472 (510)
||||.... .||++.+..++|++|+|||+....+...-=|++. .++|. . -+|++|..++..
T Consensus 245 NNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~---~GY~~---~-------d~gsy~~~s~~~~~~~~ 311 (345)
T COG3866 245 NNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFLDTKGT---SGYAN---Q-------DSGSYLNSSKSMSVRAG 311 (345)
T ss_pred ccccccCcccceEEeeccceEEEEecceeccCCCCceeeecCCc---cceEE---e-------ccCceecccCCcccccC
Confidence 99999665 4566655559999999999997544321112221 12211 1 335555555532
Q ss_pred -CCCCCCCCcccccCCCCccccc-ccccccC
Q 010437 473 -ASASYARASSLGAKSSSMVGSI-TSGAGAL 501 (510)
Q Consensus 473 -~~~~y~~~~~~~~~~~s~v~~l-t~~AG~l 501 (510)
....+...|+|.++|.+.|++. |++||+-
T Consensus 312 G~~w~ps~~Y~Ytvd~~~dVks~Vt~yAGaG 342 (345)
T COG3866 312 GVTWNPSSYYSYTVDPPEDVKSFVTNYAGAG 342 (345)
T ss_pred CccCCCCCCcccccCChHHhhhhhhccccce
Confidence 2345677889999999988865 9999964
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=2.7e-51 Score=392.39 Aligned_cols=189 Identities=42% Similarity=0.625 Sum_probs=159.6
Q ss_pred EEEeeeeEEEeCceEEecCCeEEEeeCcceEEecCceEEEE-ccccEEEEeeEEeecccCCCCccccCCCccCCccccCC
Q 010437 230 IVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQ-FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADG 308 (510)
Q Consensus 230 IVF~~sg~I~L~~~L~I~SnkTI~GqGA~~~I~~G~gI~i~-~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdg 308 (510)
+||+++|+|+++.+|.|.|||||+|+|++++|. |.|+.+. +++|||||||+|++.. ++..+...+.....++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~~~~ 75 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDSSDG 75 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEEECS-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCccccCC
Confidence 345668999999999999999999999999998 7788887 9999999999999840 1111111111234689
Q ss_pred CeEEeeCCceEEEEeeeeeCC--------CCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEeee
Q 010437 309 DAISIFGSSHIWIDHNSLSHC--------ADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHF 380 (510)
Q Consensus 309 DaIsI~gs~nVWIDHCSfS~~--------~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F 380 (510)
|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|++|+|+||+|++|+...|..++||||||||
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 999999999999999999999 999999999999999999999999999999999888777779999999999
Q ss_pred cCCCcCCCceeecceEEEEcceecCCcceeeecCCCceeEEeccEE
Q 010437 381 GEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRY 426 (510)
Q Consensus 381 ~~~~~qR~PRvR~G~~HVvNN~y~nw~~YAIGgs~~~tI~seGNyF 426 (510)
.++.+||||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 156 -~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 -ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp -EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred -CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 599999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.2e-47 Score=364.92 Aligned_cols=171 Identities=61% Similarity=0.924 Sum_probs=159.2
Q ss_pred ceEEecCCeEEEeeCcceEEecCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEE
Q 010437 242 QELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWI 321 (510)
Q Consensus 242 ~~L~I~SnkTI~GqGA~~~I~~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWI 321 (510)
.+|.|.|||||+|+|+++.|. |.+|+++.++|||||||+|+++.+. ++ .++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~~----~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------YG----SDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------CC----CCCCEEEEeCCCeEEE
Confidence 578899999999999999997 8899999999999999999986442 22 3789999999999999
Q ss_pred EeeeeeCC---------CCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCCceee
Q 010437 322 DHNSLSHC---------ADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCR 392 (510)
Q Consensus 322 DHCSfS~~---------~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR 392 (510)
|||+|+|. .|+++|++.++++||||||+|.+|+|++|+|++|++..+..++||+|||||+ ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999999887667899999999995 8999999999
Q ss_pred cceEEEEcceecCCcceeeecCCCceeEEeccEEeCC
Q 010437 393 HGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAP 429 (510)
Q Consensus 393 ~G~~HVvNN~y~nw~~YAIGgs~~~tI~seGNyF~a~ 429 (510)
+|++|++||||++|..|+++.+.++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.89 E-value=2.8e-07 Score=94.70 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=135.9
Q ss_pred hhhhhcCCCCe-EEEEeeeeEEEeCceEEec-CCeEEEeeCcc-eEEe------cCceEEEEccccEEEEeeEEeecccC
Q 010437 218 LRHAVIQDKPL-WIVFKRDMVIQLKQELIVN-SFKTIDGRGAN-VHIA------NGGCITIQFVTNVIIHGLHVHDCKPT 288 (510)
Q Consensus 218 LR~Av~q~~Pr-~IVF~~sg~I~L~~~L~I~-SnkTI~GqGA~-~~I~------~G~gI~i~~asNVIIRnLrI~~~~pg 288 (510)
|++|+.+.+|- +|++ ..|+.++++.|.|. +++||.|.|.. +.|. .+-+|.+ .++||.|++|+|++...
T Consensus 1 iQ~Ai~~A~~GDtI~l-~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~- 77 (314)
T TIGR03805 1 LQEALIAAQPGDTIVL-PEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG- 77 (314)
T ss_pred CHhHHhhCCCCCEEEE-CCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-
Confidence 56788877776 5555 46788888888886 89999998764 3332 0334544 47888888888876421
Q ss_pred CCCc-cccCCC------ccCCcc----ccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccCCeee
Q 010437 289 GNAM-VRSSPT------HYGWRT----VADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVM 357 (510)
Q Consensus 289 ~~g~-ir~s~~------h~gwr~----~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H~k~m 357 (510)
.|. ++.+.. ...|.. ....+||.+..++++-|.+|.++...|--|-+ ..+++++|++|.+.+-..+.
T Consensus 78 -~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 78 -DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred -CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceE
Confidence 111 111100 011111 13567888888899999999998887744455 46788999999887655555
Q ss_pred eecCCCCccCCCcceEEEEEeeecCCCcCCC-----cee--ec-ceEEEEcceecCCcc----------------eeeec
Q 010437 358 LLGHSDSYTRDKQMQVTIAYNHFGEGLIQRM-----PRC--RH-GYFHVVNNDYTHWEM----------------YAIGG 413 (510)
Q Consensus 358 LiG~sDs~~~D~~~~VTihhN~F~~~~~qR~-----PRv--R~-G~~HVvNN~y~nw~~----------------YAIGg 413 (510)
.+-.+. ++.+.+|.+- ++..-. |.. .+ ..+.|.||.+.+... .+|-.
T Consensus 156 ~i~~S~--------~~~v~~N~~~-~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i 226 (314)
T TIGR03805 156 EIENSQ--------NADVYNNIAT-NNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVV 226 (314)
T ss_pred EEEecC--------CcEEECCEEe-ccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEE
Confidence 554432 4666677663 322111 111 11 246677777653210 11111
Q ss_pred CCCceeEEeccEEeCCCCccccccccccc-----ccccccCCCeeeccCceEeeCeEEecCCCC
Q 010437 414 SANPTINSQGNRYNAPLNAFAKEVTKRVD-----TAASQWKGWNWRSEGDLLLNGAYFTPSGAG 472 (510)
Q Consensus 414 s~~~tI~seGNyF~a~~~~~~kevTkr~~-----~~~~~w~~w~w~s~GD~~lNGa~f~~Sg~~ 472 (510)
.....+.+++|.|..-.....--+..... +.+..|..+ ..++.+-+|.|...|..
T Consensus 227 ~~~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~v~i~~N~~~~~g~~ 286 (314)
T TIGR03805 227 MANRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPY----PRNISIHDNTFSDGGTN 286 (314)
T ss_pred EcccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCC----CcceEEEccEeecCCCC
Confidence 22346788889888766442211111100 111123222 26777888888887764
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.23 E-value=1.8e-05 Score=84.73 Aligned_cols=183 Identities=19% Similarity=0.214 Sum_probs=83.7
Q ss_pred hhhhhhcCCCCe-EEEEeeeeEEEeCceEEe------cCCeEEEeeCc-ceEEecCceEEEEccccEEEEeeEEeecccC
Q 010437 217 TLRHAVIQDKPL-WIVFKRDMVIQLKQELIV------NSFKTIDGRGA-NVHIANGGCITIQFVTNVIIHGLHVHDCKPT 288 (510)
Q Consensus 217 TLR~Av~q~~Pr-~IVF~~sg~I~L~~~L~I------~SnkTI~GqGA-~~~I~~G~gI~i~~asNVIIRnLrI~~~~pg 288 (510)
+|+.||.+..|- +|++ .+|+-+ ..+|.+ ...+||..+.+ .|.|.+..+|+|. .+.++|.+|.|+++.+.
T Consensus 6 ~lq~Ai~~a~pGD~I~L-~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~ 82 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVL-ADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTP 82 (425)
T ss_dssp HHHHHHHH--TT-EEEE--SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---
T ss_pred HHHHHHHhCCCCCEEEE-CCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCC
Confidence 399999887775 4444 467776 345655 35799999854 5777655677776 79999999999986533
Q ss_pred CCCcccc--CCC-----cc--------CCcc-ccCCCeEEe----eCCceEEEEeeeeeCC-CCC-cEEEe-------eC
Q 010437 289 GNAMVRS--SPT-----HY--------GWRT-VADGDAISI----FGSSHIWIDHNSLSHC-ADG-LVDAV-------MG 339 (510)
Q Consensus 289 ~~g~ir~--s~~-----h~--------gwr~-~sdgDaIsI----~gs~nVWIDHCSfS~~-~DG-lIDv~-------~g 339 (510)
....|.- ... |- .+.. ..+.+...+ -.++|--||||+|..- ..| .|-+. .-
T Consensus 83 ~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~ 162 (425)
T PF14592_consen 83 TGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSI 162 (425)
T ss_dssp TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS---
T ss_pred CCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcccc
Confidence 2121111 000 10 0110 111222333 1345555899999973 222 33332 13
Q ss_pred CceEEEEcccccc-------CCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCCcee--ecceEEEEcceecC
Q 010437 340 STAITISNNHMTH-------HNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRC--RHGYFHVVNNDYTH 405 (510)
Q Consensus 340 StnITISnn~F~~-------H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRv--R~G~~HVvNN~y~n 405 (510)
..+-+|.+|+|.+ ..+++-||.|.....+ -+.+|.+|+| ++|.+-.=-+ +-+.--+.||.|++
T Consensus 163 ~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~e 234 (425)
T PF14592_consen 163 ANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFRE 234 (425)
T ss_dssp ----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSSEEEEEESBT-EEES-EEES
T ss_pred ccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCceeEEEeecCCceEeccEEEe
Confidence 4577999999984 4577888887543222 3789999999 6777653322 33445555555554
No 6
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.99 E-value=6.5e-05 Score=65.97 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=83.8
Q ss_pred eEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEEE
Q 010437 266 CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITI 345 (510)
Q Consensus 266 gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnITI 345 (510)
||.+....++.|++.+|++. .++||.+.+...+.|+.|+|.+...| |.+ .+..+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~g-i~~-~~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYG-IYV-SGGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTS-EEE-ECCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcE-EEE-ecCCCeEE
Confidence 57788889999999999863 46899999999999999999994444 466 45689999
Q ss_pred EccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCCceee--cceEEEEcceecCCcceeeec--CCCceeEE
Q 010437 346 SNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCR--HGYFHVVNNDYTHWEMYAIGG--SANPTINS 421 (510)
Q Consensus 346 Snn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR--~G~~HVvNN~y~nw~~YAIGg--s~~~tI~s 421 (510)
++|.|.+......+-.+ -.+++.+|.|. ++..-.=.++ ...+.+.||.+.+-..+++-. ...+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~--------~~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGS--------SNITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS---------CS-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEec--------CCceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 99999987744333322 26888899884 4433232232 235788899888766554432 23458888
Q ss_pred eccEEeCCC
Q 010437 422 QGNRYNAPL 430 (510)
Q Consensus 422 eGNyF~a~~ 430 (510)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999998755
No 7
>PLN02218 polygalacturonase ADPG
Probab=97.97 E-value=0.00022 Score=76.84 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=96.2
Q ss_pred CceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceE
Q 010437 264 GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 343 (510)
Q Consensus 264 G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnI 343 (510)
-..+.+..++||+|+||+|.. |.+ ....|||.+.+++||.|.+|.++.+ |.+|.++.++++|
T Consensus 215 ~w~i~~~~~~nV~i~~v~I~a--~~~---------------spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI 276 (431)
T PLN02218 215 QIQISIEKCSNVQVSNVVVTA--PAD---------------SPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNV 276 (431)
T ss_pred CEEEEEEceeeEEEEEEEEeC--CCC---------------CCCCCcEeecccceEEEEccEEecC-CceEEecCCCceE
Confidence 345677899999999999974 211 1357999999999999999999988 5578999999999
Q ss_pred EEEccccccCCeeeeecCCCCcc-CCCcceEEEEEeeecCCCcCCCceee---cceEEEEcceecCCcceeeecCCCcee
Q 010437 344 TISNNHMTHHNEVMLLGHSDSYT-RDKQMQVTIAYNHFGEGLIQRMPRCR---HGYFHVVNNDYTHWEMYAIGGSANPTI 419 (510)
Q Consensus 344 TISnn~F~~H~k~mLiG~sDs~~-~D~~~~VTihhN~F~~~~~qR~PRvR---~G~~HVvNN~y~nw~~YAIGgs~~~tI 419 (510)
+|+||.+. +..++-||+--.+. .+..-+|++.++.| .+ ..+.=|++ .|.-.+-|=.|.|..|-.+. .| |
T Consensus 277 ~I~n~~c~-~GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~-t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~---~p-I 349 (431)
T PLN02218 277 QINDITCG-PGHGISIGSLGDDNSKAFVSGVTVDGAKL-SG-TDNGVRIKTYQGGSGTASNIIFQNIQMENVK---NP-I 349 (431)
T ss_pred EEEeEEEE-CCCCEEECcCCCCCCCceEEEEEEEccEE-ec-CCcceEEeecCCCCeEEEEEEEEeEEEEccc---cc-E
Confidence 99999985 33456688743322 33456899999998 33 45666665 23345555555665554432 23 5
Q ss_pred EEeccEE
Q 010437 420 NSQGNRY 426 (510)
Q Consensus 420 ~seGNyF 426 (510)
.+..+|.
T Consensus 350 ~Idq~Y~ 356 (431)
T PLN02218 350 IIDQDYC 356 (431)
T ss_pred EEEeecc
Confidence 5555554
No 8
>PLN02155 polygalacturonase
Probab=97.81 E-value=0.00058 Score=72.92 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=94.9
Q ss_pred CceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceE
Q 010437 264 GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 343 (510)
Q Consensus 264 G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnI 343 (510)
-..+.+.+++||.|+||+|.. |+. ....|||.+..++||+|.+|.+..+.| .|.++.++++|
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~--p~~---------------~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI 229 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVA--PGN---------------SPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNF 229 (394)
T ss_pred CeEEEEECeeeEEEEEEEEEC--CCC---------------CCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceE
Confidence 345667789999999999985 211 135699999999999999999998877 66898899999
Q ss_pred EEEccccccCCeeeeecCCCCc-cCCCcceEEEEEeeecCCCcCCCceeec----ceEEEEcceecCCcceeeecCCCce
Q 010437 344 TISNNHMTHHNEVMLLGHSDSY-TRDKQMQVTIAYNHFGEGLIQRMPRCRH----GYFHVVNNDYTHWEMYAIGGSANPT 418 (510)
Q Consensus 344 TISnn~F~~H~k~mLiG~sDs~-~~D~~~~VTihhN~F~~~~~qR~PRvR~----G~~HVvNN~y~nw~~YAIGgs~~~t 418 (510)
+|++|.+.. ..++-||+--.+ +.....+|++.++.|. + ..+.=|++- +.-.|-|=.|.|..|-.+. .|
T Consensus 230 ~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~---~p- 302 (394)
T PLN02155 230 LITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-G-SQNGVRIKSWARPSTGFVRNVFFQDLVMKNVE---NP- 302 (394)
T ss_pred EEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-C-CCcEEEEEEecCCCCEEEEEEEEEeEEEcCcc---cc-
Confidence 999998874 335678874322 2345668999999993 4 345566632 2234555555555443322 12
Q ss_pred eEEeccEE
Q 010437 419 INSQGNRY 426 (510)
Q Consensus 419 I~seGNyF 426 (510)
|.+..+|+
T Consensus 303 I~i~q~Y~ 310 (394)
T PLN02155 303 IIIDQNYC 310 (394)
T ss_pred EEEEeccc
Confidence 45555554
No 9
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.79 E-value=0.00077 Score=72.15 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=88.2
Q ss_pred CceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceE
Q 010437 264 GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 343 (510)
Q Consensus 264 G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnI 343 (510)
-..|.+..++||.|+||+|.. |.+ ....|||-+..++||+|.+|.+..+.| .|.++.++++|
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~--~~~---------------spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI 239 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISA--PSD---------------SPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQV 239 (404)
T ss_pred CeEEEEEccccEEEEEEEEeC--CCC---------------CCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccE
Confidence 456777889999999999974 211 135699999999999999999998877 77898899999
Q ss_pred EEEccccccCCeeeeecCCCCc-cCCCcceEEEEEeeecCCCcCCCceeec-----ceEEEEcceecCCcc
Q 010437 344 TISNNHMTHHNEVMLLGHSDSY-TRDKQMQVTIAYNHFGEGLIQRMPRCRH-----GYFHVVNNDYTHWEM 408 (510)
Q Consensus 344 TISnn~F~~H~k~mLiG~sDs~-~~D~~~~VTihhN~F~~~~~qR~PRvR~-----G~~HVvNN~y~nw~~ 408 (510)
+|+|+.... ..++-+|+--++ .....-+|++.++.|. + ..+.=|++. |...+-|=.|.|..|
T Consensus 240 ~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~GiriKt~~g~~~~G~v~nI~f~ni~m 307 (404)
T PLN02188 240 TITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRIKTWANSPGKSAATNMTFENIVM 307 (404)
T ss_pred EEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEEEEecCCCCceEEEEEEEEeEEe
Confidence 999998853 345678873222 1234678999999993 3 355556641 223444444555444
No 10
>PLN02793 Probable polygalacturonase
Probab=97.73 E-value=0.00083 Score=72.71 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=80.1
Q ss_pred CceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceE
Q 010437 264 GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 343 (510)
Q Consensus 264 G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnI 343 (510)
...|.+..++||.|+||+|... .. ....|||.+..++||.|.+|.+..+ |..|.++.++++|
T Consensus 200 ~~~i~~~~~~nv~i~~l~I~~p--~~---------------spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI 261 (443)
T PLN02793 200 QMHIAFTNCRRVTISGLKVIAP--AT---------------SPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRI 261 (443)
T ss_pred CeEEEEEccCcEEEEEEEEECC--CC---------------CCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCE
Confidence 3456677899999999999852 10 1357999999999999999999865 5577898899999
Q ss_pred EEEccccccCCeeeeecCCCCc-cCCCcceEEEEEeeecCCCcCCCceee
Q 010437 344 TISNNHMTHHNEVMLLGHSDSY-TRDKQMQVTIAYNHFGEGLIQRMPRCR 392 (510)
Q Consensus 344 TISnn~F~~H~k~mLiG~sDs~-~~D~~~~VTihhN~F~~~~~qR~PRvR 392 (510)
+|+||.+.. ..+.-||+--.+ ......+|++.++.|. + ..+.=|++
T Consensus 262 ~I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~-~-t~~GirIK 308 (443)
T PLN02793 262 KIRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS-N-TDNGVRIK 308 (443)
T ss_pred EEEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe-C-CCceEEEE
Confidence 999999853 234668863222 2234568999999983 3 45666664
No 11
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.65 E-value=0.00068 Score=70.05 Aligned_cols=152 Identities=20% Similarity=0.166 Sum_probs=98.3
Q ss_pred CCCCeEEEEeeeeEEEeCceEEecCCeEEEeeCcceEEecCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCc
Q 010437 224 QDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWR 303 (510)
Q Consensus 224 q~~Pr~IVF~~sg~I~L~~~L~I~SnkTI~GqGA~~~I~~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr 303 (510)
...|+.|.|...-.+.++ ++||. -+| ...+.+..++||.|+||+|+....
T Consensus 89 ~~rp~~i~~~~~~~~~i~-------~i~~~--nsp-----~w~~~~~~~~nv~i~~i~I~~~~~---------------- 138 (326)
T PF00295_consen 89 QRRPRLIRFNNCKNVTIE-------GITIR--NSP-----FWHIHINDCDNVTISNITINNPAN---------------- 138 (326)
T ss_dssp SSSSESEEEEEEEEEEEE-------SEEEE--S-S-----SESEEEESEEEEEEESEEEEEGGG----------------
T ss_pred ccccceeeeeeecceEEE-------eeEec--CCC-----eeEEEEEccCCeEEcceEEEecCC----------------
Confidence 356888888654222222 23333 122 456778899999999999986321
Q ss_pred cccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCcc-CCCcceEEEEEeeecC
Q 010437 304 TVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYT-RDKQMQVTIAYNHFGE 382 (510)
Q Consensus 304 ~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~-~D~~~~VTihhN~F~~ 382 (510)
....|||.+.+++||.|++|.+... |..|.++.++.+|+|+||.|.. ..++-+|+--... ....-+|++.++.|-
T Consensus 139 -~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~- 214 (326)
T PF00295_consen 139 -SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII- 214 (326)
T ss_dssp -CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-
T ss_pred -CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee-
Confidence 1367999999999999999999877 6677998888899999999964 3346677532221 122458999999993
Q ss_pred CCcCCCceeec---ceEEEEcceecCCccee
Q 010437 383 GLIQRMPRCRH---GYFHVVNNDYTHWEMYA 410 (510)
Q Consensus 383 ~~~qR~PRvR~---G~~HVvNN~y~nw~~YA 410 (510)
+ ..|.-|++- +...|-|=.|++..+..
T Consensus 215 ~-t~~gi~iKt~~~~~G~v~nI~f~ni~~~~ 244 (326)
T PF00295_consen 215 N-TDNGIRIKTWPGGGGYVSNITFENITMEN 244 (326)
T ss_dssp S-ESEEEEEEEETTTSEEEEEEEEEEEEEEE
T ss_pred c-cceEEEEEEecccceEEeceEEEEEEecC
Confidence 4 456666642 33344444455544433
No 12
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.63 E-value=0.0012 Score=71.66 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=83.2
Q ss_pred eEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEEE
Q 010437 266 CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITI 345 (510)
Q Consensus 266 gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnITI 345 (510)
.+.+..++||.|+||+|... . .....|||.+..++||+|.+|.++.+.| +|.++.++++|+|
T Consensus 163 ~i~i~~c~nV~i~~l~I~ap--~---------------~spNTDGIDi~~S~nV~I~n~~I~tGDD-CIaiksgs~NI~I 224 (456)
T PLN03003 163 HIHISECNYVTISSLRINAP--E---------------SSPNTDGIDVGASSNVVIQDCIIATGDD-CIAINSGTSNIHI 224 (456)
T ss_pred EEEEeccccEEEEEEEEeCC--C---------------CCCCCCcEeecCcceEEEEecEEecCCC-eEEeCCCCccEEE
Confidence 34455667777777777642 1 1136799999999999999999987755 6699999999999
Q ss_pred EccccccCCeeeeecCCCCcc-CCCcceEEEEEeeecCCCcCCCceeec---ceEEEEcceecCCcc
Q 010437 346 SNNHMTHHNEVMLLGHSDSYT-RDKQMQVTIAYNHFGEGLIQRMPRCRH---GYFHVVNNDYTHWEM 408 (510)
Q Consensus 346 Snn~F~~H~k~mLiG~sDs~~-~D~~~~VTihhN~F~~~~~qR~PRvR~---G~~HVvNN~y~nw~~ 408 (510)
+||.+.. ..++-||+--++. .+..-+|++.++.|. + ..+.=|++- |.-.+-|=.|.|..|
T Consensus 225 ~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~-~-T~nGvRIKT~~Gg~G~v~nItf~nI~m 288 (456)
T PLN03003 225 SGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFR-G-TMNGARIKTWQGGSGYARMITFNGITL 288 (456)
T ss_pred EeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEE-C-CCcEEEEEEeCCCCeEEEEEEEEeEEe
Confidence 9999863 3356788653332 245679999999993 4 455567752 333344444455433
No 13
>PLN02218 polygalacturonase ADPG
Probab=97.52 E-value=0.0045 Score=66.93 Aligned_cols=119 Identities=20% Similarity=0.325 Sum_probs=84.4
Q ss_pred CeEEEEeeeeEEEeCceEEecC--CeEEEeeCcceE-----Eec------C-ceEEEEccccEEEEeeEEeecccCCCCc
Q 010437 227 PLWIVFKRDMVIQLKQELIVNS--FKTIDGRGANVH-----IAN------G-GCITIQFVTNVIIHGLHVHDCKPTGNAM 292 (510)
Q Consensus 227 Pr~IVF~~sg~I~L~~~L~I~S--nkTI~GqGA~~~-----I~~------G-~gI~i~~asNVIIRnLrI~~~~pg~~g~ 292 (510)
..||.|... +.|.|.. .=||+|+|..-. ... . .-|++.+++||.|++|+|++.
T Consensus 147 ~~wi~~~~~------~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nS------- 213 (431)
T PLN02218 147 SKWIMFDGV------NNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNA------- 213 (431)
T ss_pred ccCEEEecC------cEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcC-------
Confidence 357766431 2455533 378888884210 000 0 136788999999999999973
Q ss_pred cccCCCccCCccccCCCeEEeeCCceEEEEeeeeeC-----CCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccC
Q 010437 293 VRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSH-----CADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTR 367 (510)
Q Consensus 293 ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~-----~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~ 367 (510)
..=.|.+.+++||.|++.++.. -.||. |+ ..+++|+|++|.|..-+.+.-|.+.
T Consensus 214 --------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di-~ss~nV~I~n~~I~tGDDcIaIksg----- 272 (431)
T PLN02218 214 --------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDGI-HI-TNTQNIRVSNSIIGTGDDCISIESG----- 272 (431)
T ss_pred --------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-ee-cccceEEEEccEEecCCceEEecCC-----
Confidence 1235788899999999999875 46776 88 6789999999999988877777653
Q ss_pred CCcceEEEEEeeec
Q 010437 368 DKQMQVTIAYNHFG 381 (510)
Q Consensus 368 D~~~~VTihhN~F~ 381 (510)
..+|++.++.++
T Consensus 273 --s~nI~I~n~~c~ 284 (431)
T PLN02218 273 --SQNVQINDITCG 284 (431)
T ss_pred --CceEEEEeEEEE
Confidence 237888888874
No 14
>PLN03010 polygalacturonase
Probab=97.51 E-value=0.0057 Score=65.75 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=74.4
Q ss_pred cCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCc-cCCCcceEEEEEeeecCCC
Q 010437 306 ADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSY-TRDKQMQVTIAYNHFGEGL 384 (510)
Q Consensus 306 sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~-~~D~~~~VTihhN~F~~~~ 384 (510)
...|||-+..++||+|.+|.+..+ |..|.++.++++++|.++.... ..++-||+--+. ..+..-+|++.++.|. +
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~- 280 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-Q- 280 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-C-
Confidence 357999999999999999998887 6677998888888887766642 224557764322 2234678999999994 3
Q ss_pred cCCCceee---cceEEEEcceecCCcceeeecCCCceeEEeccEEe
Q 010437 385 IQRMPRCR---HGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYN 427 (510)
Q Consensus 385 ~qR~PRvR---~G~~HVvNN~y~nw~~YAIGgs~~~tI~seGNyF~ 427 (510)
..+.=|++ .|.-.|-|=.|.|..+... ..| |.+..+|..
T Consensus 281 t~~GirIKt~~G~~G~v~nItf~nI~m~~v---~~p-I~I~q~Y~~ 322 (409)
T PLN03010 281 TTNGARIKTWQGGQGYARNISFENITLINT---KNP-IIIDQQYID 322 (409)
T ss_pred CCcceEEEEecCCCEEEEEeEEEeEEEecC---Ccc-EEEEeeccC
Confidence 34556664 2334455555666544332 233 555555543
No 15
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.50 E-value=0.0067 Score=64.75 Aligned_cols=175 Identities=11% Similarity=0.110 Sum_probs=131.0
Q ss_pred hhhhhcCCCCeEEEEeeeeEEEeCceEEecCCeEEEeeCcceEEe--cCceEEE---------EccccEEEEeeEEeecc
Q 010437 218 LRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIA--NGGCITI---------QFVTNVIIHGLHVHDCK 286 (510)
Q Consensus 218 LR~Av~q~~Pr~IVF~~sg~I~L~~~L~I~SnkTI~GqGA~~~I~--~G~gI~i---------~~asNVIIRnLrI~~~~ 286 (510)
|-.|+.+-. -|..+-+-+.++++.+.|.+..+|+|+||-+.|. ++.+|.+ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 788877754 4666667778888999999999999999999884 4445654 3668999999999741
Q ss_pred cCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCcc
Q 010437 287 PTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYT 366 (510)
Q Consensus 287 pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~ 366 (510)
..--|+-+...+++.|.-|+|....-=.++.. ....|..|+|..-+|++ .+.
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi-~~~----- 185 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGI-VSR----- 185 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEe-ecC-----
Confidence 12467778889999999999999888888874 57889999999888875 333
Q ss_pred CCCcceEEEEEeeecCCCcCCCceeecceEEEEcceecCCcceeeecCCCceeEEeccEEeCCCC
Q 010437 367 RDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLN 431 (510)
Q Consensus 367 ~D~~~~VTihhN~F~~~~~qR~PRvR~G~~HVvNN~y~nw~~YAIGgs~~~tI~seGNyF~a~~~ 431 (510)
++.++++.+|.| +.+.-=. +-.|..++.+|...+-.-..+-+ .+..+.+|.|..+..
T Consensus 186 --~~~~lsVk~C~F-ekC~igi--~s~G~~~i~hn~~~ec~Cf~l~~---g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 186 --GKSKLSVKKCVF-EKCVIGI--VSEGPARIRHNCASECGCFVLMK---GTGSIKHNMVCGPND 242 (386)
T ss_pred --CcceEEeeheee-eheEEEE--EecCCeEEecceecccceEEEEc---ccEEEeccEEeCCCC
Confidence 245789999999 5443222 23588999999998865444322 234577899987765
No 16
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.49 E-value=0.0032 Score=65.12 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=95.6
Q ss_pred cCCeEEEeeCcceEEecCceEEEEccccEEEEeeEEeeccc-----CCCCc-cccCCCcc--CCcc-ccCCCeEEeeCCc
Q 010437 247 NSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP-----TGNAM-VRSSPTHY--GWRT-VADGDAISIFGSS 317 (510)
Q Consensus 247 ~SnkTI~GqGA~~~I~~G~gI~i~~asNVIIRnLrI~~~~p-----g~~g~-ir~s~~h~--gwr~-~sdgDaIsI~gs~ 317 (510)
.+++||.|.+-.- ..+.||.++.++|++|+++++..... +.-|. ...+..-. +-.. ...++||.+..++
T Consensus 62 a~~VtI~~ltI~~--~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~ 139 (314)
T TIGR03805 62 SDDVTLSDLAVEN--TKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQ 139 (314)
T ss_pred eCCeEEEeeEEEc--CCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCC
Confidence 5667776653210 12457788888888888888862100 00011 00010000 0000 1234589999999
Q ss_pred eEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCC---------
Q 010437 318 HIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRM--------- 388 (510)
Q Consensus 318 nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~--------- 388 (510)
++.|-+|.+.....|. -+ +.|.+++|.+|.+.+-.-+.++-..++-..-...++++++|.|. ++...+
T Consensus 140 ~~~v~nN~~~~n~~GI-~i-~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~-~n~~~n~~~~gn~v~ 216 (314)
T TIGR03805 140 NIVVRNNVAEENVAGI-EI-ENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF-DNNTPNFAPAGSIVA 216 (314)
T ss_pred CeEEECCEEccCcceE-EE-EecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE-CCCCCCCcccCCcee
Confidence 9999999999888775 44 45889999999999866666663322211112348999999995 443321
Q ss_pred --ceeec------ceEEEEcceecCCcceee
Q 010437 389 --PRCRH------GYFHVVNNDYTHWEMYAI 411 (510)
Q Consensus 389 --PRvR~------G~~HVvNN~y~nw~~YAI 411 (510)
|.-+. -.+.++||.+.+....++
T Consensus 217 ~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 217 SVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred cCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 11110 146899999988655444
No 17
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.42 E-value=0.0048 Score=57.86 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=28.8
Q ss_pred hhhhhh--cC-CCCeEEEEeeeeEEEeCceEEecCCeEEEeeCcc
Q 010437 217 TLRHAV--IQ-DKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGAN 258 (510)
Q Consensus 217 TLR~Av--~q-~~Pr~IVF~~sg~I~L~~~L~I~SnkTI~GqGA~ 258 (510)
.|+.|+ .+ .+..+|.| ..|+..+++.|.+.+++||.|.|..
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~~ 63 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGGN 63 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTT
T ss_pred HHHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCCC
Confidence 388888 23 34456666 5679999999999999999998763
No 18
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.42 E-value=0.0086 Score=58.14 Aligned_cols=107 Identities=24% Similarity=0.238 Sum_probs=69.4
Q ss_pred eEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEEE
Q 010437 266 CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITI 345 (510)
Q Consensus 266 gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnITI 345 (510)
||.+..+++++|++-.|++. ..||.+..+.+..|..+.|+...+|. -+ .++.+.||
T Consensus 59 GI~~~~s~~~~i~~n~i~~n----------------------~~Gi~l~~s~~~~I~~N~i~~n~~GI-~l-~~s~~~~I 114 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISNN----------------------GYGIYLMGSSNNTISNNTISNNGYGI-YL-YGSSNNTI 114 (236)
T ss_pred EEEEEccCCCEEEeEEEEcc----------------------CCCEEEEcCCCcEEECCEecCCCceE-EE-eeCCceEE
Confidence 55555666666666666531 27788887776788888888887754 44 45777888
Q ss_pred EccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCCce-eec-ceEEEEcceecC
Q 010437 346 SNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPR-CRH-GYFHVVNNDYTH 405 (510)
Q Consensus 346 Snn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PR-vR~-G~~HVvNN~y~n 405 (510)
++|.|.+...++.+-.+. +.+|.+|.|. ++..---. +.. ....+++|.|.+
T Consensus 115 ~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~-~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 115 SNNTISNNGYGIYLSSSS--------NNTITGNTIS-NNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred ECcEEeCCCEEEEEEeCC--------CCEEECeEEe-CCCccceEEeccCCCCEEECCCccC
Confidence 888888766666665442 5778888884 44233333 222 357778888833
No 19
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.41 E-value=0.0061 Score=66.17 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=66.3
Q ss_pred hhhhhhcCCC-C-eEEEEeeeeEEEeCceEEecCCeEEEeeCcce--EEecCceEE-EEccccEEEEeeEEeecccCCCC
Q 010437 217 TLRHAVIQDK-P-LWIVFKRDMVIQLKQELIVNSFKTIDGRGANV--HIANGGCIT-IQFVTNVIIHGLHVHDCKPTGNA 291 (510)
Q Consensus 217 TLR~Av~q~~-P-r~IVF~~sg~I~L~~~L~I~SnkTI~GqGA~~--~I~~G~gI~-i~~asNVIIRnLrI~~~~pg~~g 291 (510)
.|+.|+.+.. | -.|++.. |+. +...|.+.+++||.|+.... .|.++.++. -..++||-|++|+|++. |
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs-----G 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG-----G 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC-----C
Confidence 4888886633 2 2455543 333 34678899999999995432 244333443 34799999999999862 1
Q ss_pred ccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCC-CCc
Q 010437 292 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCA-DGL 333 (510)
Q Consensus 292 ~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~-DGl 333 (510)
. .+ ....-+|.+.+++++-|.+|.+.... .|.
T Consensus 129 ~------dl----~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI 161 (455)
T TIGR03808 129 I------PL----PQRRGLIHCQGGRDVRITDCEITGSGGNGI 161 (455)
T ss_pred C------cc----cCCCCEEEEccCCceEEEeeEEEcCCcceE
Confidence 1 01 12445888888999999999998873 554
No 20
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.33 E-value=0.0023 Score=56.20 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=75.1
Q ss_pred CceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceE
Q 010437 264 GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 343 (510)
Q Consensus 264 G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnI 343 (510)
+.+|.+...+++.|++-+|++ .+.+|.+.+..++.|+.|.|+... ..+.+ ..+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~-~~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYV-SGSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEEC-CS-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEE-EecCCc
Confidence 456788777787888888874 346777777788888888888887 44455 477888
Q ss_pred EEEccccccCCe-eeeecCCCCccCCCcceEEEEEeeecCCCcCCCceeec-c--eEEEEcceecCCcceeeecCCCce-
Q 010437 344 TISNNHMTHHNE-VMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRH-G--YFHVVNNDYTHWEMYAIGGSANPT- 418 (510)
Q Consensus 344 TISnn~F~~H~k-~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR~-G--~~HVvNN~y~nw~~YAIGgs~~~t- 418 (510)
+|++|.|.+... ++.+.. ....+++.+|.|. ++.+..=.+.. . .+-+.||.+++...+++.-..+..
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 888888887654 444432 1225788888883 44423222222 2 466688888877777775433333
Q ss_pred eEEeccEE
Q 010437 419 INSQGNRY 426 (510)
Q Consensus 419 I~seGNyF 426 (510)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 77778876
No 21
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.18 E-value=0.0057 Score=66.64 Aligned_cols=118 Identities=18% Similarity=0.303 Sum_probs=86.0
Q ss_pred eEEEEeeeeEEEeCceEEecCCeEEEeeCcceEE---ecCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCcc
Q 010437 228 LWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHI---ANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRT 304 (510)
Q Consensus 228 r~IVF~~sg~I~L~~~L~I~SnkTI~GqGA~~~I---~~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~ 304 (510)
.||.|..- +.|.|...=||+|||..-.- ..-..|.+.+++||.|++|++++.
T Consensus 105 ~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS------------------- 159 (456)
T PLN03003 105 QWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDS------------------- 159 (456)
T ss_pred ceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecC-------------------
Confidence 48888542 23556444589999854210 001257788999999999999864
Q ss_pred ccCCCeEEeeCCceEEEEeeeeeC-----CCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEee
Q 010437 305 VADGDAISIFGSSHIWIDHNSLSH-----CADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNH 379 (510)
Q Consensus 305 ~sdgDaIsI~gs~nVWIDHCSfS~-----~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~ 379 (510)
..=.|.+.+++||.|++.++.. -.||. |+ ..+++|+|.+|.+..-+.+.-+++.. .+|++.++.
T Consensus 160 --p~w~i~i~~c~nV~i~~l~I~ap~~spNTDGI-Di-~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~~ 228 (456)
T PLN03003 160 --PMAHIHISECNYVTISSLRINAPESSPNTDGI-DV-GASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGID 228 (456)
T ss_pred --CcEEEEEeccccEEEEEEEEeCCCCCCCCCcE-ee-cCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEeeE
Confidence 2235788899999999999975 46776 88 67999999999999888877776542 267777777
Q ss_pred ec
Q 010437 380 FG 381 (510)
Q Consensus 380 F~ 381 (510)
++
T Consensus 229 c~ 230 (456)
T PLN03003 229 CG 230 (456)
T ss_pred EE
Confidence 64
No 22
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.02 E-value=0.021 Score=55.42 Aligned_cols=131 Identities=23% Similarity=0.189 Sum_probs=96.6
Q ss_pred ceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEE
Q 010437 265 GCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAIT 344 (510)
Q Consensus 265 ~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnIT 344 (510)
.++.+..++++.|++.+|++. ..||.+.+++++-|..|.++.+.+|. .+ ..+.+.|
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi-~l-~~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGI-YL-MGSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCE-EE-EcCCCcE
Confidence 456778899999999998742 47889999999999999999999775 55 4455559
Q ss_pred EEccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCCceeec-ceEEEEcceecCCcceeee-cCCCceeEEe
Q 010437 345 ISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRH-GYFHVVNNDYTHWEMYAIG-GSANPTINSQ 422 (510)
Q Consensus 345 ISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR~-G~~HVvNN~y~nw~~YAIG-gs~~~tI~se 422 (510)
|++|.|.+...+.++-.++ ..+|..|.|. .....-.+.. ....+.+|.+.+...|+|- ........+.
T Consensus 92 I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~--~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLYGSS--------NNTISNNTIS--NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EECCEecCCCceEEEeeCC--------ceEEECcEEe--CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 9999999877776665443 4788899883 3333344443 5688899999887677776 4444456777
Q ss_pred ccEEeCC
Q 010437 423 GNRYNAP 429 (510)
Q Consensus 423 GNyF~a~ 429 (510)
+|+|.+.
T Consensus 162 ~N~f~N~ 168 (236)
T PF05048_consen 162 NNNFNNS 168 (236)
T ss_pred CCCccCE
Confidence 8999433
No 23
>PLN02155 polygalacturonase
Probab=96.97 E-value=0.012 Score=62.92 Aligned_cols=117 Identities=19% Similarity=0.358 Sum_probs=83.8
Q ss_pred eEEEEeeeeEEEeCceEEecCCeEEEeeCcceEEe--cC-------ceEEEEccccEEEEeeEEeecccCCCCccccCCC
Q 010437 228 LWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIA--NG-------GCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPT 298 (510)
Q Consensus 228 r~IVF~~sg~I~L~~~L~I~SnkTI~GqGA~~~I~--~G-------~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~ 298 (510)
.||.|..- +.+.|.. =||+|||..---. .+ ..|.+..++||.|++|++++.
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS------------- 166 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS------------- 166 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-------------
Confidence 47766432 3455544 6889998531100 01 247788999999999999864
Q ss_pred ccCCccccCCCeEEeeCCceEEEEeeeeeC-----CCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceE
Q 010437 299 HYGWRTVADGDAISIFGSSHIWIDHNSLSH-----CADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQV 373 (510)
Q Consensus 299 h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~-----~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~V 373 (510)
..=.|.+.+++||.|+|.++.. -.||. |+ ..+++|+|.+|.|..-+...-+++.. -+|
T Consensus 167 --------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-di-~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 167 --------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-HV-QFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred --------CCeEEEEECeeeEEEEEEEEECCCCCCCCCcc-cc-ccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 1235677899999999999965 35776 88 67999999999999888887777642 267
Q ss_pred EEEEeeec
Q 010437 374 TIAYNHFG 381 (510)
Q Consensus 374 TihhN~F~ 381 (510)
++.++.+.
T Consensus 230 ~I~n~~c~ 237 (394)
T PLN02155 230 LITKLACG 237 (394)
T ss_pred EEEEEEEE
Confidence 88777764
No 24
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.82 E-value=0.011 Score=61.05 Aligned_cols=108 Identities=20% Similarity=0.362 Sum_probs=75.7
Q ss_pred EEecCCeEEEeeCcceEEec----------CceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEe
Q 010437 244 LIVNSFKTIDGRGANVHIAN----------GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISI 313 (510)
Q Consensus 244 L~I~SnkTI~GqGA~~~I~~----------G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI 313 (510)
+.+.-.=||+|+|..=.-.. -..|.+..++|+.|++|+|++. | .| .+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns-p-------------~w-------~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS-P-------------FW-------HIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES--S-------------SE-------SEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCC-C-------------ee-------EEEE
Confidence 44544569999986200000 1247788999999999999964 1 12 4788
Q ss_pred eCCceEEEEeeeeeC-----CCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEeeec
Q 010437 314 FGSSHIWIDHNSLSH-----CADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFG 381 (510)
Q Consensus 314 ~gs~nVWIDHCSfS~-----~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~ 381 (510)
..++||.|+|.++.. -.||. |+ .++++|+|.+|.|...+.+.-+.+... .|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d~-~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-DI-DSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-EE-ESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-EE-EeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 899999999999864 36776 88 678999999999998887776665421 7888888884
No 25
>PLN03010 polygalacturonase
Probab=96.81 E-value=0.023 Score=61.23 Aligned_cols=157 Identities=21% Similarity=0.275 Sum_probs=94.5
Q ss_pred EEecCCeEEEeeCcceEEecCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEe
Q 010437 244 LIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDH 323 (510)
Q Consensus 244 L~I~SnkTI~GqGA~~~I~~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDH 323 (510)
+.|.-.=||+|+|..- . .-|.+.+++||.|++|++++. ..=.|.+.++++|.|++
T Consensus 141 v~I~G~G~IDG~G~~w-w---~~l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~ 195 (409)
T PLN03010 141 LMIDGSGTIDGRGSSF-W---EALHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISK 195 (409)
T ss_pred cEEeeceEEeCCCccc-c---ceEEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEE
Confidence 3333334556655331 0 137788999999999999974 12347788999999999
Q ss_pred eeeeC-----CCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCC----cCCCce-eec
Q 010437 324 NSLSH-----CADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGL----IQRMPR-CRH 393 (510)
Q Consensus 324 CSfS~-----~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~----~qR~PR-vR~ 393 (510)
..+.. -.||. |+ ..+++|+|++|.+..-+.+.-+.+..+ ...|+..++..+++. ...... --.
T Consensus 196 i~I~a~~~s~NTDGi-Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V 268 (409)
T PLN03010 196 INILAPETSPNTDGI-DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKV 268 (409)
T ss_pred EEEeCCCCCCCCCce-ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCee
Confidence 98864 46776 88 679999999999999888887865421 235555555433210 011000 001
Q ss_pred ceEEEEcceecCCc-ceee---ecC--CCceeEEeccEEeCCCCc
Q 010437 394 GYFHVVNNDYTHWE-MYAI---GGS--ANPTINSQGNRYNAPLNA 432 (510)
Q Consensus 394 G~~HVvNN~y~nw~-~YAI---Ggs--~~~tI~seGNyF~a~~~~ 432 (510)
-.+++.|+.+++-. .-.| .++ .-..|.+++-.++....|
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~p 313 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNP 313 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCcc
Confidence 24667777776531 1111 111 112456666666665554
No 26
>PLN02793 Probable polygalacturonase
Probab=96.78 E-value=0.026 Score=61.33 Aligned_cols=118 Identities=18% Similarity=0.271 Sum_probs=83.5
Q ss_pred eEEEEeeeeEEEeCceEEecCCeEEEeeCcceE-----Eec-------CceEEEEccccEEEEeeEEeecccCCCCcccc
Q 010437 228 LWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH-----IAN-------GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRS 295 (510)
Q Consensus 228 r~IVF~~sg~I~L~~~L~I~SnkTI~GqGA~~~-----I~~-------G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~ 295 (510)
.||.|... +.|.|.-.=||+|+|..-. +.. -.-|.+.+++||.|++|++++.
T Consensus 135 ~~i~~~~~------~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---------- 198 (443)
T PLN02793 135 KWLYFHGV------NHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---------- 198 (443)
T ss_pred eEEEEecC------ceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC----------
Confidence 37766431 2355544468888885321 000 1246778999999999999964
Q ss_pred CCCccCCccccCCCeEEeeCCceEEEEeeeeeC-----CCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCc
Q 010437 296 SPTHYGWRTVADGDAISIFGSSHIWIDHNSLSH-----CADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQ 370 (510)
Q Consensus 296 s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~-----~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~ 370 (510)
..=.+.+.+++||.|++.++.. -.||. |+ ..+++|+|++|.|...+.+..+....
T Consensus 199 -----------p~~~i~~~~~~nv~i~~l~I~~p~~spNTDGI-di-~~s~nV~I~n~~I~~gDDcIaik~~s------- 258 (443)
T PLN02793 199 -----------QQMHIAFTNCRRVTISGLKVIAPATSPNTDGI-HI-SASRGVVIKDSIVRTGDDCISIVGNS------- 258 (443)
T ss_pred -----------CCeEEEEEccCcEEEEEEEEECCCCCCCCCcE-ee-eccceEEEEeCEEeCCCCeEEecCCc-------
Confidence 1224677889999999999965 46776 88 67999999999999888877775432
Q ss_pred ceEEEEEeeec
Q 010437 371 MQVTIAYNHFG 381 (510)
Q Consensus 371 ~~VTihhN~F~ 381 (510)
.+|+|.++.+.
T Consensus 259 ~nI~I~n~~c~ 269 (443)
T PLN02793 259 SRIKIRNIACG 269 (443)
T ss_pred CCEEEEEeEEe
Confidence 26888887774
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.74 E-value=0.048 Score=59.40 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=91.2
Q ss_pred CeEEEeeCcceEEecCceEEEEccccEEEEeeEEeecc-cC-----CCCccccCCCccCCccccCCCeEEeeCCceEEEE
Q 010437 249 FKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK-PT-----GNAMVRSSPTHYGWRTVADGDAISIFGSSHIWID 322 (510)
Q Consensus 249 nkTI~GqGA~~~I~~G~gI~i~~asNVIIRnLrI~~~~-pg-----~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWID 322 (510)
++||+|.|.+-.=. -.+|.++.++++.|++.+|++.- -+ ..+.|.+.. . ......+|.++.++++.|.
T Consensus 121 GLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~--I---~g~~~~~I~lw~S~g~~V~ 194 (455)
T TIGR03808 121 GLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNT--I---TQIAVTAIVSFDALGLIVA 194 (455)
T ss_pred eeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecce--E---eccccceEEEeccCCCEEE
Confidence 34677776543211 23678889999999999998751 10 011222111 0 0113345888889999999
Q ss_pred eeeeeCCCCCcEEEee-----------------------------------CCceEEEEccccccCCeeeeecCCCCccC
Q 010437 323 HNSLSHCADGLVDAVM-----------------------------------GSTAITISNNHMTHHNEVMLLGHSDSYTR 367 (510)
Q Consensus 323 HCSfS~~~DGlIDv~~-----------------------------------gStnITISnn~F~~H~k~mLiG~sDs~~~ 367 (510)
+++++.+.|+.|-+.+ .+.+++|++|.++++.+--+.+.+.+
T Consensus 195 ~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss--- 271 (455)
T TIGR03808 195 RNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS--- 271 (455)
T ss_pred CCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc---
Confidence 9999999886555532 25678888888888774334443322
Q ss_pred CCcceEEEEEeeecCCCcCCCceeec-c----e----EEEEcceecCC-cceeeec-CCCce-eEEeccEEeC
Q 010437 368 DKQMQVTIAYNHFGEGLIQRMPRCRH-G----Y----FHVVNNDYTHW-EMYAIGG-SANPT-INSQGNRYNA 428 (510)
Q Consensus 368 D~~~~VTihhN~F~~~~~qR~PRvR~-G----~----~HVvNN~y~nw-~~YAIGg-s~~~t-I~seGNyF~a 428 (510)
++.|..|.| + ++|+ | | .-+.||.+++. ..|++-- .++.. ..++||...+
T Consensus 272 ----~~~i~~N~~-~-------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 ----NIQITGNSV-S-------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred ----CcEEECcEe-e-------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 445555555 1 2343 2 1 23566666543 3566532 23333 3556776654
No 28
>PLN02480 Probable pectinesterase
Probab=96.72 E-value=0.034 Score=58.72 Aligned_cols=119 Identities=17% Similarity=0.264 Sum_probs=76.3
Q ss_pred hhhhhhcCC----CCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcce-EEec---------CceEEEEccccEEEEe
Q 010437 217 TLRHAVIQD----KPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANV-HIAN---------GGCITIQFVTNVIIHG 279 (510)
Q Consensus 217 TLR~Av~q~----~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~-~I~~---------G~gI~i~~asNVIIRn 279 (510)
|+.+||..- ..++|||=+.|+.+ +.|.| .+|+||.|.+... .|.. +..+++ .++|++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 788888552 23566666667665 66777 4679999988543 3431 223444 589999999
Q ss_pred eEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccC
Q 010437 280 LHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHH 353 (510)
Q Consensus 280 LrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H 353 (510)
|+|++..+.+.. ...++-|+-+. .++++-+.+|.|.-..|=|.+- ...--..+|++..+
T Consensus 139 LTf~Nta~~g~~------------~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG~ 198 (343)
T PLN02480 139 ISIRNDAPTGMA------------FTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQGS 198 (343)
T ss_pred eEEEecCCCCCC------------CCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEee
Confidence 999986432110 11244566664 6889999999998887777643 22344455555543
No 29
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=96.51 E-value=0.0011 Score=52.99 Aligned_cols=29 Identities=10% Similarity=0.160 Sum_probs=24.0
Q ss_pred chHHhhcccCCCChhHHHHHhhhhccccc
Q 010437 119 VVAEALSKHAVDNPDEIASMVEMSTRNST 147 (510)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (510)
.-...++++|+|||++|+++||+.|+.++
T Consensus 15 eA~~~a~~aY~pdP~~Vt~~FN~~V~~~~ 43 (56)
T PF04431_consen 15 EARKAALAAYVPDPENVTNEFNRHVHRAM 43 (56)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33446788999999999999999998665
No 30
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.41 E-value=0.043 Score=59.04 Aligned_cols=118 Identities=21% Similarity=0.315 Sum_probs=84.7
Q ss_pred eEEEEeeeeEEEeCceEEecCCeEEEeeCcceE------Ee-c----CceEEEEccccEEEEeeEEeecccCCCCccccC
Q 010437 228 LWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH------IA-N----GGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSS 296 (510)
Q Consensus 228 r~IVF~~sg~I~L~~~L~I~SnkTI~GqGA~~~------I~-~----G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s 296 (510)
.||.|.. -..|.|...=||+|+|..-- .. + -.-|.+..++||.|++|+|++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4787741 13466666678899986310 00 0 1246778899999999999974
Q ss_pred CCccCCccccCCCeEEeeCCceEEEEeeeeeC-----CCCCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcc
Q 010437 297 PTHYGWRTVADGDAISIFGSSHIWIDHNSLSH-----CADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQM 371 (510)
Q Consensus 297 ~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~-----~~DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~ 371 (510)
..=.|.+..++||.|++.++.. -.||. |+ ..+++|+|.+|.|..-+.+.-++... -
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-di-~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDGI-HI-ERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcE-ee-eCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 1235778899999999999875 46776 88 77999999999999888887775432 2
Q ss_pred eEEEEEeeec
Q 010437 372 QVTIAYNHFG 381 (510)
Q Consensus 372 ~VTihhN~F~ 381 (510)
+|++.++...
T Consensus 238 nI~I~n~~c~ 247 (404)
T PLN02188 238 QVTITRIRCG 247 (404)
T ss_pred cEEEEEEEEc
Confidence 6777777663
No 31
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.22 E-value=0.14 Score=51.88 Aligned_cols=186 Identities=22% Similarity=0.231 Sum_probs=107.4
Q ss_pred hhhhhhcCCCCeEEEEeeeeEEEeC----ceEEecCCeEEEeeCcc-----eEEe--------cCc-------eEEEEcc
Q 010437 217 TLRHAVIQDKPLWIVFKRDMVIQLK----QELIVNSFKTIDGRGAN-----VHIA--------NGG-------CITIQFV 272 (510)
Q Consensus 217 TLR~Av~q~~Pr~IVF~~sg~I~L~----~~L~I~SnkTI~GqGA~-----~~I~--------~G~-------gI~i~~a 272 (510)
||.+|+.+..|-.+|+=..|+.+-. -+|.+.+.+||.|.... +.+. .|. .++|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 7888888777654444355666543 25778888888885432 1111 121 1455568
Q ss_pred ccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCC-CCCcEEEe----eCCceEEEEc
Q 010437 273 TNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHC-ADGLVDAV----MGSTAITISN 347 (510)
Q Consensus 273 sNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~-~DGlIDv~----~gStnITISn 347 (510)
++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ .+|..... ....+++|+.
T Consensus 97 ~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~G 157 (246)
T PF07602_consen 97 NNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISG 157 (246)
T ss_pred CCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeec
Confidence 888899999986421 35678999877 777899999996 56643321 1345677888
Q ss_pred cccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcC------CCceeecc-eEEEEcceecCCcceeeecCC--Cce
Q 010437 348 NHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQ------RMPRCRHG-YFHVVNNDYTHWEMYAIGGSA--NPT 418 (510)
Q Consensus 348 n~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~q------R~PRvR~G-~~HVvNN~y~nw~~YAIGgs~--~~t 418 (510)
|.+.....+.-+- +.... ....+-+|++. ++.+ ..|-+..+ .-.+-||.+.+.+.|.+--.. .-+
T Consensus 158 N~~~~~~~Gi~i~--~~~~~---~~n~I~NN~I~-~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~ 231 (246)
T PF07602_consen 158 NSIYFNKTGISIS--DNAAP---VENKIENNIIE-NNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQT 231 (246)
T ss_pred ceEEecCcCeEEE--cccCC---ccceeeccEEE-eCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCcee
Confidence 8766543322221 11111 11234556663 2221 11333321 234667888777777776532 346
Q ss_pred eEEeccEEe
Q 010437 419 INSQGNRYN 427 (510)
Q Consensus 419 I~seGNyF~ 427 (510)
+++.||...
T Consensus 232 l~a~gN~ld 240 (246)
T PF07602_consen 232 LYAVGNQLD 240 (246)
T ss_pred EEEeCCccC
Confidence 777777664
No 32
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.00 E-value=0.11 Score=58.07 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=73.0
Q ss_pred ceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEee------
Q 010437 265 GCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVM------ 338 (510)
Q Consensus 265 ~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~------ 338 (510)
.++..+.++|+.|+||+|..-.+ ...|||-+..++||-|+-|.|+.+.| .|-++.
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~ 322 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDG 322 (542)
T ss_pred EEEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCcc
Confidence 35666799999999999974211 26799999999999999999998443 444432
Q ss_pred -----CCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCCceee
Q 010437 339 -----GSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCR 392 (510)
Q Consensus 339 -----gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR 392 (510)
.+.+|+|++|+|..-.-+..+|+. ...+...|++-.|.| .+ ..|.=|++
T Consensus 323 ~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~-~~-~d~GLRik 376 (542)
T COG5434 323 KKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVM-DN-TDRGLRIK 376 (542)
T ss_pred cccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeee-cc-Ccceeeee
Confidence 246899999999853333344432 122456789999999 33 66666663
No 33
>PLN02197 pectinesterase
Probab=95.90 E-value=0.34 Score=54.71 Aligned_cols=152 Identities=22% Similarity=0.294 Sum_probs=91.4
Q ss_pred cccccc--ccccccccccccccccccCCCCeE---EEEcCCCCCCCCCCCCc---hhhhhhcC----CCCeEEEEeeeeE
Q 010437 170 DGNWHK--NRKRLADCGIGFGRNAIGGRDGRF---YVVTDPRDDDPVNPKPG---TLRHAVIQ----DKPLWIVFKRDMV 237 (510)
Q Consensus 170 ~~~w~~--~rq~LA~~A~GFG~~ttGGrgG~v---y~VTnl~Ddd~vnp~pG---TLR~Av~q----~~Pr~IVF~~sg~ 237 (510)
.|.|-. +|+-|. +.+.|.++-||..+.+ ++|-- | +.| |+.+||.. ...++|||=+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 488854 455563 3555667767765542 33321 2 344 78888854 2346777767777
Q ss_pred EEeCceEEe---cCCeEEEeeCcceEEe---------cCce----EE-EEccccEEEEeeEEeecccCCCCccccCCCcc
Q 010437 238 IQLKQELIV---NSFKTIDGRGANVHIA---------NGGC----IT-IQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHY 300 (510)
Q Consensus 238 I~L~~~L~I---~SnkTI~GqGA~~~I~---------~G~g----I~-i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~ 300 (510)
.+ +.+.| .+|+||.|.|..-+|. +|.. =+ ...+++++.+||.|++-...
T Consensus 314 Y~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~------------ 379 (588)
T PLN02197 314 YN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGP------------ 379 (588)
T ss_pred EE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeCCCC------------
Confidence 54 55666 3689999998764432 2211 01 12689999999999984210
Q ss_pred CCccccCCCeEEee-CCceEEEEeeeeeCCCCC-----------------cEEEeeCCceEEEEcccc
Q 010437 301 GWRTVADGDAISIF-GSSHIWIDHNSLSHCADG-----------------LVDAVMGSTAITISNNHM 350 (510)
Q Consensus 301 gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DG-----------------lIDv~~gStnITISnn~F 350 (510)
.+.-|+-+. .++..-+.+|+|.-..|= .+|++-|.-..-+++|.|
T Consensus 380 -----~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i 442 (588)
T PLN02197 380 -----MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLI 442 (588)
T ss_pred -----CCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEecccccccceeeeeecCEE
Confidence 123455544 478888999998865554 445555555555556655
No 34
>smart00656 Amb_all Amb_all domain.
Probab=95.33 E-value=0.52 Score=45.58 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=79.8
Q ss_pred ecCCeEEEeeCcceEEecCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCe-EEee-CCceEEEEe
Q 010437 246 VNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDA-ISIF-GSSHIWIDH 323 (510)
Q Consensus 246 I~SnkTI~GqGA~~~I~~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDa-IsI~-gs~nVWIDH 323 (510)
|-.|++|.+-.... ..++-+|.+.+++||+|.+..|....+.+. + ....|+ +.+. ++.+|=|-.
T Consensus 43 Iirnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~~~----------~---~~~~D~~~di~~~s~~vTvs~ 108 (190)
T smart00656 43 IIRNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVTGF----------G---DDTYDGLIDIKNGSTYVTISN 108 (190)
T ss_pred EEeCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceeccC----------C---CCCCCccEEECcccccEEEEC
Confidence 34577777743321 013557888899999999999987422110 0 112344 3443 566666666
Q ss_pred eeeeCCCCCcEEEeeCC------ceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEeeecCCCcCCCceeec-ceE
Q 010437 324 NSLSHCADGLVDAVMGS------TAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRH-GYF 396 (510)
Q Consensus 324 CSfS~~~DGlIDv~~gS------tnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR~-G~~ 396 (510)
|.|....-+.+--..++ ..||+.+|+|.+.. +..+.- +.-++-+.+|+| .+..+-.--++. +.+
T Consensus 109 ~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~-----~R~P~~---r~g~~hv~NN~~-~n~~~~~~~~~~~~~v 179 (190)
T smart00656 109 NYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLR-----QRAPRV---RFGYVHVYNNYY-TGWTSYAIGGRMGATI 179 (190)
T ss_pred ceEecCCEEEEEccCCCccccccceEEEECcEEcCcc-----cCCCcc---cCCEEEEEeeEE-eCcccEeEecCCCcEE
Confidence 66654433332221111 27999999998642 221111 112788899999 455433333332 689
Q ss_pred EEEcceecC
Q 010437 397 HVVNNDYTH 405 (510)
Q Consensus 397 HVvNN~y~n 405 (510)
.+-||||.+
T Consensus 180 ~~E~N~F~~ 188 (190)
T smart00656 180 LSEGNYFEA 188 (190)
T ss_pred EEECeEEEC
Confidence 999999986
No 35
>PLN02176 putative pectinesterase
Probab=94.41 E-value=0.71 Score=48.93 Aligned_cols=120 Identities=13% Similarity=0.209 Sum_probs=73.4
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEEe---cCc------eEEEEccccEEEEee
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA---NGG------CITIQFVTNVIIHGL 280 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I~---~G~------gI~i~~asNVIIRnL 280 (510)
|+.+||.. +..+++||-+.|+-+ +.|.| .+|+||.|.|...+|. ++. .+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 67788744 223566776777765 55666 4689999998764432 111 2333 6899999999
Q ss_pred EEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccC
Q 010437 281 HVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHH 353 (510)
Q Consensus 281 rI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H 353 (510)
+|++..+..+ + .....+-|+-+. .++.+-+.+|.|.-..|=|.+- ...--..+|++..+
T Consensus 130 T~~Nt~~~~~------~-----~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG~ 189 (340)
T PLN02176 130 TFKNTYNIAS------N-----SSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISGG 189 (340)
T ss_pred EEEeCCCccC------C-----CCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEec
Confidence 9998643100 0 001233455444 4678889999998777766543 22344455555543
No 36
>PLN02432 putative pectinesterase
Probab=94.28 E-value=0.61 Score=48.47 Aligned_cols=113 Identities=15% Similarity=0.285 Sum_probs=70.1
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-e--cCc------eEEEEccccEEEEee
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A--NGG------CITIQFVTNVIIHGL 280 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~--~G~------gI~i~~asNVIIRnL 280 (510)
|+..||.. ...+++||=+.|+- ++.|.| .+|+||.|.+...+| . ++. .+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 67777743 22345555556655 455666 579999999865443 2 121 2223 6899999999
Q ss_pred EEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccC
Q 010437 281 HVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHH 353 (510)
Q Consensus 281 rI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H 353 (510)
.|++..+ ..+-|+-+. .++.+-+.+|.|.-..|=|++- ...--..+|++..+
T Consensus 102 t~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G~ 154 (293)
T PLN02432 102 TIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEGA 154 (293)
T ss_pred EEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEec
Confidence 9998532 123344443 4678889999999877777542 22344556666543
No 37
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.22 E-value=0.46 Score=53.13 Aligned_cols=98 Identities=12% Similarity=0.242 Sum_probs=63.8
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-e------cCc------eEEEEccccEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A------NGG------CITIQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~------~G~------gI~i~~asNVI 276 (510)
|+.+||.. ...++||+=+.|+.+ +.+.| .+|+||.|.|...+| . +|. .+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 67778754 345777777778764 55666 479999999976544 3 121 1233 589999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcE
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlI 334 (510)
.+||.|++-... ...-|+-+. .++.+-+-+|.|.-..|=|.
T Consensus 321 a~nitf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy 362 (541)
T PLN02416 321 ARDITIENTAGP-----------------EKHQAVALRVNADLVALYRCTINGYQDTLY 362 (541)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCccEEEEcceEecccchhc
Confidence 999999985211 122444443 46778888998887655443
No 38
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.16 E-value=1.2 Score=47.51 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=67.1
Q ss_pred EEecCCeEEEeeCcceEEecCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEe
Q 010437 244 LIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDH 323 (510)
Q Consensus 244 L~I~SnkTI~GqGA~~~I~~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDH 323 (510)
|.+....|-++.-.+-.|+...||.+.++.++.|..-+|.+... + +...-|+||++..+..+-|--
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~-----~---------r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD-----L---------RVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc-----c---------chhhccCceEEEcCCCcEEEc
Confidence 33444555555433333445678999999999999999986421 1 223578999999999999999
Q ss_pred eeeeCCCCCcEEEeeCCceEEEEcccccc
Q 010437 324 NSLSHCADGLVDAVMGSTAITISNNHMTH 352 (510)
Q Consensus 324 CSfS~~~DGlIDv~~gStnITISnn~F~~ 352 (510)
+.++...||... .-|+.-+++.|.|++
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEEE--cccccceecccchhh
Confidence 999999999854 346677777777764
No 39
>PLN02304 probable pectinesterase
Probab=93.86 E-value=1.1 Score=48.32 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=75.4
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-e--cCc---------eEEEEccccEEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A--NGG---------CITIQFVTNVII 277 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~--~G~---------gI~i~~asNVII 277 (510)
|+.+||.. +..+++||=+.|+-+ +.|.| .+|+||.|+|...+| . +.. .-....++|++.
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~a 166 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIA 166 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeEE
Confidence 67888744 223566666667654 66777 579999999876443 2 110 111125899999
Q ss_pred EeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccC
Q 010437 278 HGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHH 353 (510)
Q Consensus 278 RnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H 353 (510)
+||.|++..+.+ .+ +..+.-|+-+. .+..+-+.+|.|.-..|=|.+- ...--..+|++..+
T Consensus 167 ~nITf~Nta~~~------~~------g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~ 228 (379)
T PLN02304 167 KNISFMNVAPIP------KP------GDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGS 228 (379)
T ss_pred EeeEEEecCCCC------CC------CCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEccc
Confidence 999999864321 00 11233455554 5788889999999988887653 23344567766654
No 40
>PLN02773 pectinesterase
Probab=93.72 E-value=1.1 Score=47.21 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=61.2
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-Ee-c---------------C------ce
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA-N---------------G------GC 266 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~-~---------------G------~g 266 (510)
|+..||.. ...+++||=+.|+-+ +.|.| .+|+||.|++...+ |. + | ..
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777743 223556665667654 56667 45899999886533 32 1 1 11
Q ss_pred EEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEE
Q 010437 267 ITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVD 335 (510)
Q Consensus 267 I~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlID 335 (510)
+. ..++|++.+||+|++..+. ..+-|+-+. .++.+-+.+|.|--..|=|.+
T Consensus 97 v~-v~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~ 148 (317)
T PLN02773 97 VI-VEGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYL 148 (317)
T ss_pred EE-EECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEe
Confidence 22 2589999999999985321 123344443 467788899988776665543
No 41
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=93.71 E-value=0.67 Score=51.79 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=63.4
Q ss_pred hhhhhhcC-----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-e------cCce-----EEEEccccEE
Q 010437 217 TLRHAVIQ-----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A------NGGC-----ITIQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q-----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~------~G~g-----I~i~~asNVI 276 (510)
|+.+||.. ...+++|+=+.|+.+ +.+.| .+|+||.|.|...+| . +|.+ -....++|++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F~ 316 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGFI 316 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCeE
Confidence 78888853 223677777778764 55666 479999999876444 2 1211 1123689999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcE
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlI 334 (510)
.+||.|++-.+. ..+-|+-+. .++.+.+.+|.|.-..|=|.
T Consensus 317 a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy 358 (529)
T PLN02170 317 ARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLY 358 (529)
T ss_pred EEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCcce
Confidence 999999985210 122344443 46778889999987655443
No 42
>PLN02916 pectinesterase family protein
Probab=93.43 E-value=1.1 Score=49.96 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=62.3
Q ss_pred hhhhhhcC-------CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEEe-------cCce-----EEEEcccc
Q 010437 217 TLRHAVIQ-------DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NGGC-----ITIQFVTN 274 (510)
Q Consensus 217 TLR~Av~q-------~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I~-------~G~g-----I~i~~asN 274 (510)
|+.+||.. ...+++|+=+.|+.+ +.+.| .+|+||.|.|..-+|. +|.. -....+++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 278 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDG 278 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECCC
Confidence 67777743 234677776777665 55666 4689999998764432 2211 11135899
Q ss_pred EEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcE
Q 010437 275 VIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (510)
Q Consensus 275 VIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlI 334 (510)
++.+||.|++-.+. ...-|+-+. .++..-+.+|.|.-..|=|.
T Consensus 279 F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy 322 (502)
T PLN02916 279 FWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLF 322 (502)
T ss_pred EEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeE
Confidence 99999999985311 122444443 46777899999877655444
No 43
>PLN02665 pectinesterase family protein
Probab=93.38 E-value=2.6 Score=45.18 Aligned_cols=118 Identities=10% Similarity=0.141 Sum_probs=72.5
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-Ee-cC----------ceEEEEccccEEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA-NG----------GCITIQFVTNVII 277 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~-~G----------~gI~i~~asNVII 277 (510)
|+.+||.. +..++|||=+.|+.+ +.+.| .+++||.|++...+ |. ++ ..+. ..+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~-v~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLI-VESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEE-EECCCeEE
Confidence 67888744 223667776777765 56666 46899999976533 43 11 1122 36899999
Q ss_pred EeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEEEeeCCceEEEEcccccc
Q 010437 278 HGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTH 352 (510)
Q Consensus 278 RnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~ 352 (510)
+||.|++-.|.+.+ ...+.-|+-+. .++.+-+.+|.|.-..|=|.+- ...--..+|++..
T Consensus 159 ~nitf~Nta~~~~~------------~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~---~gr~yf~~CyIeG 219 (366)
T PLN02665 159 ANIIIKNSAPRPDG------------KRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDD---KGRHFFKDCYIEG 219 (366)
T ss_pred EeeEEEeCCCCcCC------------CCCCcceEEEEEcCCcEEEEcceeccccceeEeC---CCCEEEEeeEEee
Confidence 99999986442110 01122344443 4677889999999887777653 2233445666654
No 44
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=93.27 E-value=0.77 Score=51.39 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=62.9
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-e------cCce-----EEEEccccEEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A------NGGC-----ITIQFVTNVII 277 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~------~G~g-----I~i~~asNVII 277 (510)
|+.+||.. ...++|||=+.|+.+ +.+.| .+|+||.|.|...+| . +|.+ .....+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 67778744 234677776777654 44555 479999999866443 2 1211 11236899999
Q ss_pred EeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcE
Q 010437 278 HGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (510)
Q Consensus 278 RnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlI 334 (510)
+||.|++-... .+.-|+-+. .++++-+.+|.|.-..|=|.
T Consensus 324 ~nit~~Ntag~-----------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy 364 (537)
T PLN02506 324 RDITFRNTAGP-----------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLY 364 (537)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeecccccce
Confidence 99999985210 123444443 47888899999987666554
No 45
>PLN02682 pectinesterase family protein
Probab=93.21 E-value=1.5 Score=47.02 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=71.4
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-Ee----------cC--------ceEEEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA----------NG--------GCITIQ 270 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~----------~G--------~gI~i~ 270 (510)
|+.+||.. +..+++|+=+.|+.+ +.+.| .+|+||.|.|..-+ |. +| ..+. .
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~-v 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTYR--EKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFA-V 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCceee--EEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEE-E
Confidence 67777744 223455555566654 55666 57999999986543 32 11 0122 3
Q ss_pred ccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccc
Q 010437 271 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNH 349 (510)
Q Consensus 271 ~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~ 349 (510)
.+++++.+||.|++..+.+ .+ + ..+.-|+-+. .++++-+.+|.|.-..|=|.+- ...--..+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccC------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 5899999999999854311 00 0 1233445443 4788889999998877766552 2334455666
Q ss_pred cccC
Q 010437 350 MTHH 353 (510)
Q Consensus 350 F~~H 353 (510)
+..+
T Consensus 226 IeG~ 229 (369)
T PLN02682 226 IEGS 229 (369)
T ss_pred Eccc
Confidence 5543
No 46
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.19 E-value=1.2 Score=49.94 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=63.0
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-Ee------cCc------eEEEEccccEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA------NGG------CITIQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~------~G~------gI~i~~asNVI 276 (510)
|+.+||.. ...+++|+=+.|+.+ +.+.| .+|+||.|.|..-+ |. +|. .+. ..+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~-v~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVG-VKGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEE-EECCCEE
Confidence 67778744 223566666677776 55666 46899999986543 32 121 112 2589999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcE
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlI 334 (510)
.+||.|++-.+. ...-|+-+. .++.+-+.+|.|.-..|=|.
T Consensus 309 a~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy 350 (530)
T PLN02933 309 AKDISFVNYAGP-----------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLY 350 (530)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEEeEEEecccccc
Confidence 999999984210 123455554 57888899999987655544
No 47
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=93.10 E-value=2.3 Score=47.69 Aligned_cols=115 Identities=15% Similarity=0.212 Sum_probs=76.5
Q ss_pred hhhhhhcC---CC----CeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-e------cCc------eEEEEccc
Q 010437 217 TLRHAVIQ---DK----PLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A------NGG------CITIQFVT 273 (510)
Q Consensus 217 TLR~Av~q---~~----Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~------~G~------gI~i~~as 273 (510)
|+.+||.. .. -++||+=+.|+.+ +.+.| ..|+||.|.|..-+| . +|. .+. ..++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~-v~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFA-VSGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEE-EECC
Confidence 67778743 11 2677777778765 55666 479999999876443 2 221 122 2689
Q ss_pred cEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCC-----------------CCcEE
Q 010437 274 NVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCA-----------------DGLVD 335 (510)
Q Consensus 274 NVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~-----------------DGlID 335 (510)
++|.+||.|++-.. . ...-|+-+. .+...-+.+|+|.-.. .|.+|
T Consensus 314 ~F~a~~it~~Ntag--------------~---~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVD 376 (538)
T PLN03043 314 RFVAVDVTFRNTAG--------------P---EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVD 376 (538)
T ss_pred CEEEEeeEEEECCC--------------C---CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccc
Confidence 99999999998421 0 123455554 4677888999887533 56677
Q ss_pred EeeCCceEEEEccccc
Q 010437 336 AVMGSTAITISNNHMT 351 (510)
Q Consensus 336 v~~gStnITISnn~F~ 351 (510)
++-|.-.+-+++|.|.
T Consensus 377 FIFG~a~avfq~c~i~ 392 (538)
T PLN03043 377 FIFGNAAAIFQNCNLY 392 (538)
T ss_pred eEeecceeeeeccEEE
Confidence 7777777788888775
No 48
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=93.02 E-value=1 Score=50.56 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=73.2
Q ss_pred hhhhhhcC-----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEEe--------cCc------eEEEEcccc
Q 010437 217 TLRHAVIQ-----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA--------NGG------CITIQFVTN 274 (510)
Q Consensus 217 TLR~Av~q-----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I~--------~G~------gI~i~~asN 274 (510)
|+.+||.. ...+.|||=+.|+.+ +.+.| ..|+||.|.|..-+|. +|. .+. ..+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~-v~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVG-VLGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEE-EEcCC
Confidence 67777743 123567776778765 44555 5699999998664432 121 122 25899
Q ss_pred EEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCC-----------------CCcEEE
Q 010437 275 VIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCA-----------------DGLVDA 336 (510)
Q Consensus 275 VIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~-----------------DGlIDv 336 (510)
++.+||+|++-.. ....-|+-+. .++.+-+.+|.|.-.. .|.+|+
T Consensus 332 f~a~~it~~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 332 FMARDLTIQNTAG-----------------PDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDF 394 (553)
T ss_pred eEEEeeEEEcCCC-----------------CCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCE
Confidence 9999999997421 0123555554 5788889999997644 455555
Q ss_pred eeCCceEEEEccccc
Q 010437 337 VMGSTAITISNNHMT 351 (510)
Q Consensus 337 ~~gStnITISnn~F~ 351 (510)
+-|.-.+-+++|.|.
T Consensus 395 IFG~a~avfq~c~i~ 409 (553)
T PLN02708 395 IFGNSAAVFQDCAIL 409 (553)
T ss_pred EecCceEEEEccEEE
Confidence 555555666666554
No 49
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=92.89 E-value=1.4 Score=50.08 Aligned_cols=98 Identities=13% Similarity=0.187 Sum_probs=63.2
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEEe-------cCce------EEEEccccEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NGGC------ITIQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I~-------~G~g------I~i~~asNVI 276 (510)
|+.+||.. ...++||+=+.|+.+ +.+.| .+|+||.|.|...+|. +|.+ +. ..+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~-v~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFV-ALGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEE-EEcCCEE
Confidence 67788754 223566776677665 45666 3589999999765432 1211 12 2689999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcE
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlI 334 (510)
.+||.|++..+. ...-|+-+. .++.+-+.+|.|.-..|=|.
T Consensus 376 a~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy 417 (596)
T PLN02745 376 AKSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLY 417 (596)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeecccccc
Confidence 999999985210 123444443 46888899999987655554
No 50
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=92.69 E-value=1.3 Score=49.41 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=63.1
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-Ee------cCce----EE-EEccccEEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA------NGGC----IT-IQFVTNVII 277 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~------~G~g----I~-i~~asNVII 277 (510)
|+.+||.. ...+++||=+.|+.+ +.+.| .+|+||.|.|...+ |. +|.+ =+ ...+++++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 67778744 223566666677664 55666 46899999986544 32 2221 01 136899999
Q ss_pred EeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEE
Q 010437 278 HGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVD 335 (510)
Q Consensus 278 RnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlID 335 (510)
+||.|++-.+. ..+-|+-+. .++..-+.+|.|.-..|=|.+
T Consensus 298 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~ 339 (520)
T PLN02201 298 RDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYT 339 (520)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEe
Confidence 99999985321 123444444 467888999999876665543
No 51
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=92.64 E-value=1.4 Score=49.80 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=72.6
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-EecCce----E------E-EEccccEEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IANGGC----I------T-IQFVTNVII 277 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~~G~g----I------~-i~~asNVII 277 (510)
|+.+||.. ...++||+=+.|+.+-+ .+.| .+|+||.|.|..-+ |..+.. . + ...+++++.
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a 364 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIA 364 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEE
Confidence 67778854 23467777777876532 3666 46999999987644 332111 1 1 126899999
Q ss_pred EeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCC-----------------CcEEEeeC
Q 010437 278 HGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAVMG 339 (510)
Q Consensus 278 RnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~D-----------------GlIDv~~g 339 (510)
|||.|++-.+. ...-|+-+. .++..-+.+|.|.-..| |.+|++-|
T Consensus 365 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 427 (587)
T PLN02484 365 RDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFG 427 (587)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecc
Confidence 99999985210 123455444 46778889998876544 44555555
Q ss_pred CceEEEEccccc
Q 010437 340 STAITISNNHMT 351 (510)
Q Consensus 340 StnITISnn~F~ 351 (510)
.-..-+++|.|.
T Consensus 428 ~a~avfq~C~i~ 439 (587)
T PLN02484 428 NAAVVLQNCSIY 439 (587)
T ss_pred cceeEEeccEEE
Confidence 555555555553
No 52
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=92.62 E-value=2.6 Score=47.75 Aligned_cols=115 Identities=15% Similarity=0.228 Sum_probs=76.4
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEEe-------cCc------eEEEEccccEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NGG------CITIQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I~-------~G~------gI~i~~asNVI 276 (510)
|+.+||.. ...++|||=+.|+.+ +.+.| ..|+||.|.|..-+|. +|. .+. ..+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~-v~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA-AVGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE-EECCCeE
Confidence 67778754 233667776777654 55666 3689999998765432 221 112 2589999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCC-----------------CCCcEEEee
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHC-----------------ADGLVDAVM 338 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~-----------------~DGlIDv~~ 338 (510)
.+||.|++-.. . ...-|+-+. +++..-+.+|+|.-. ..|.+|++-
T Consensus 366 a~~itf~Ntag--------------~---~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIF 428 (587)
T PLN02313 366 ARDITFQNTAG--------------P---SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIF 428 (587)
T ss_pred EEeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceec
Confidence 99999998521 0 123444443 567788999988753 367778877
Q ss_pred CCceEEEEccccc
Q 010437 339 GSTAITISNNHMT 351 (510)
Q Consensus 339 gStnITISnn~F~ 351 (510)
|.-.+-+++|.|.
T Consensus 429 G~a~avfq~c~i~ 441 (587)
T PLN02313 429 GNAAAVLQDCDIN 441 (587)
T ss_pred cceeEEEEccEEE
Confidence 8888888888886
No 53
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=92.53 E-value=1.5 Score=49.09 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=64.6
Q ss_pred hhhhhhcC------CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-Eec------Cce------EEEEcccc
Q 010437 217 TLRHAVIQ------DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IAN------GGC------ITIQFVTN 274 (510)
Q Consensus 217 TLR~Av~q------~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~~------G~g------I~i~~asN 274 (510)
|..+||.. ...+++|+=+.|+.+ +.+.| .+|+|+.|.|...+ |.. |.+ +. ..+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~-v~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAG-IEGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEE-EECCC
Confidence 78888854 123566666667764 44556 46999999987644 431 111 12 26899
Q ss_pred EEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEE
Q 010437 275 VIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVD 335 (510)
Q Consensus 275 VIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlID 335 (510)
++.+||.|++..+ . ..+-|+-+. .++...+.+|.|.-..|=|.+
T Consensus 314 F~a~nitf~Ntag--------------~---~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~ 358 (539)
T PLN02995 314 FIAKGITFRNTAG--------------P---AKGQAVALRSSSDLSIFYKCSIEGYQDTLMV 358 (539)
T ss_pred eEEEeeEEEeCCC--------------C---CCCceEEEEEcCCceeEEcceEecccchhcc
Confidence 9999999998421 0 133555554 578888999999877665543
No 54
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=92.42 E-value=1.5 Score=48.95 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=71.8
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-ec------Cce----EE-EEccccEEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-AN------GGC----IT-IQFVTNVII 277 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~~------G~g----I~-i~~asNVII 277 (510)
|+.+||.. ...+++|+=+.|+.+ +.+.| .+|+||.|.|...+| .. |.. -+ ...++++|.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 67778744 223566666667654 55666 469999999976543 21 211 01 125899999
Q ss_pred EeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCC-----------------CcEEEeeC
Q 010437 278 HGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAVMG 339 (510)
Q Consensus 278 RnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~D-----------------GlIDv~~g 339 (510)
+||.|++-.. ...+-|+-+. .++..-+.+|+|.-..| |.+|++-|
T Consensus 289 ~nitf~Ntag-----------------~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG 351 (509)
T PLN02488 289 IDMCFRNTAG-----------------PAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICG 351 (509)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEec
Confidence 9999998421 0134556554 57888899999886554 44444445
Q ss_pred CceEEEEccccc
Q 010437 340 STAITISNNHMT 351 (510)
Q Consensus 340 StnITISnn~F~ 351 (510)
.-.+-+++|.|.
T Consensus 352 ~a~avFq~C~I~ 363 (509)
T PLN02488 352 NAAAVFQFCQIV 363 (509)
T ss_pred ceEEEEEccEEE
Confidence 555555555553
No 55
>PLN02497 probable pectinesterase
Probab=92.26 E-value=2.2 Score=45.18 Aligned_cols=120 Identities=12% Similarity=0.189 Sum_probs=71.6
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-Ee--cCc------eEEEEccccEEEEee
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA--NGG------CITIQFVTNVIIHGL 280 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~--~G~------gI~i~~asNVIIRnL 280 (510)
|+.+||.. ...+++|+=+.|+-+ +.+.| .+++||.|+|...+ |. ++. .+. ..++|++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y~--EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~-v~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLYR--EKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFS-TLADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEEE--EEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEE-EecCCeEEEcc
Confidence 67777743 223555665666653 55666 57999999986533 32 111 222 36899999999
Q ss_pred EEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEEEeeCCceEEEEcccccc
Q 010437 281 HVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTH 352 (510)
Q Consensus 281 rI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~ 352 (510)
.|++..+... .+ ....+.-|+-+. .++.+-+.+|.|.-..|=|.+- ...--..+|++..
T Consensus 123 T~~Nt~~~~~---------~~-~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG 182 (331)
T PLN02497 123 TFANSYNFPS---------KG-NKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQG 182 (331)
T ss_pred EEEeCCCCcc---------cc-CCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEe
Confidence 9998542100 00 001123455544 5788889999999888877653 2234445565554
No 56
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.14 E-value=3.5 Score=47.43 Aligned_cols=144 Identities=12% Similarity=0.143 Sum_probs=89.7
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEEe-------cCce------EEEEccccEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-------NGGC------ITIQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I~-------~G~g------I~i~~asNVI 276 (510)
|+.+||.. ...++||+=+.|+.+ +.+.| ..|+||.|.|...+|. +|.+ +. ..+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~-v~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGIYK--EYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVA-IVGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCceE--EEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEE-EECCCeE
Confidence 67788854 233666666667653 55666 3588999998765442 2221 22 2689999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCC-----------------CCCcEEEee
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHC-----------------ADGLVDAVM 338 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~-----------------~DGlIDv~~ 338 (510)
.|||.|++-.. ..+.-|+-+. .++..-+.+|.|.-. ..|.+|++-
T Consensus 341 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 99999998531 0223455554 467778888888642 367788888
Q ss_pred CCceEEEEccccccC-----CeeeeecCCCCccCCCcceEEEEEeeec
Q 010437 339 GSTAITISNNHMTHH-----NEVMLLGHSDSYTRDKQMQVTIAYNHFG 381 (510)
Q Consensus 339 gStnITISnn~F~~H-----~k~mLiG~sDs~~~D~~~~VTihhN~F~ 381 (510)
|.-..-+++|.|.-- .+.++--++- ...+...-+.|+++.+.
T Consensus 404 G~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i~ 450 (670)
T PLN02217 404 GDAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTIV 450 (670)
T ss_pred cCceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEEe
Confidence 888899999998631 1222222211 11123456788888873
No 57
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=92.08 E-value=4.7 Score=45.63 Aligned_cols=116 Identities=14% Similarity=0.212 Sum_probs=74.7
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-Eec------C-ceE----E-EEccccEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IAN------G-GCI----T-IQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~~------G-~gI----~-i~~asNVI 276 (510)
|+.+||.. ...++||+=+.|+.+ +.+.| .+|+||.|.|..-+ |.. | .+- + ...+++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~~F~ 350 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGDHFT 350 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcCCEE
Confidence 77888854 223566666677665 55666 46999999986543 421 2 110 1 12589999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCC-----------------CCcEEEee
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCA-----------------DGLVDAVM 338 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~-----------------DGlIDv~~ 338 (510)
.|||.|++-.+ ....-|+-+. .++..-+.+|.|.-.. .|.+|++-
T Consensus 351 a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 413 (572)
T PLN02990 351 AKNIGFENTAG-----------------PEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIF 413 (572)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEc
Confidence 99999998521 0133555554 5677889999887543 56667666
Q ss_pred CCceEEEEccccc
Q 010437 339 GSTAITISNNHMT 351 (510)
Q Consensus 339 gStnITISnn~F~ 351 (510)
|.-..-+++|.|.
T Consensus 414 G~a~avf~~C~i~ 426 (572)
T PLN02990 414 GDAKVVLQNCNIV 426 (572)
T ss_pred cCceEEEEccEEE
Confidence 6667777777775
No 58
>PLN02671 pectinesterase
Probab=91.82 E-value=2.9 Score=44.78 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=70.1
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCc---ceEEe----------cCceE-------EE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGA---NVHIA----------NGGCI-------TI 269 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA---~~~I~----------~G~gI-------~i 269 (510)
|+..||.. ...+++|+=+.|+.+ +.|.| .+++||.|.|. +..|. +|..+ ..
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY~--EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIYR--EKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceEE--EEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 56667643 222455555666654 56666 57999999874 34453 11101 11
Q ss_pred EccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEEEeeCCceEEEEcc
Q 010437 270 QFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITISNN 348 (510)
Q Consensus 270 ~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn 348 (510)
..++|++.+||.|++..+...+ ...+-|+-+. .++++-+.+|.|.-..|=|++- ...--..+|
T Consensus 151 v~a~~F~a~nitfeNt~~~~~g-------------~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C 214 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEPG-------------GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQC 214 (359)
T ss_pred EECCceEEEeeEEEcCCCCCCC-------------CCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEec
Confidence 2589999999999986321110 1123344443 4688889999999888877653 223445566
Q ss_pred ccccC
Q 010437 349 HMTHH 353 (510)
Q Consensus 349 ~F~~H 353 (510)
++..+
T Consensus 215 yIeG~ 219 (359)
T PLN02671 215 YIQGS 219 (359)
T ss_pred EEEEe
Confidence 66543
No 59
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=91.69 E-value=1.4 Score=45.61 Aligned_cols=123 Identities=11% Similarity=0.191 Sum_probs=69.0
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEec---CCeEEEeeCcceEEecCc-------------eEEEEccccEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIVN---SFKTIDGRGANVHIANGG-------------CITIQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I~---SnkTI~GqGA~~~I~~G~-------------gI~i~~asNVI 276 (510)
|+..||.. ...+++||=..|+-+ +.|.|. +++||.|.|...+|.-+. .+.+ .++|++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 67777754 234677777778776 556773 699999998764432121 1223 589999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccCCee
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEV 356 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H~k~ 356 (510)
.+||.|++.... .....-|+.+ .++++.+.+|.|.-..|=|..- ....-+.+|++..+-.
T Consensus 91 ~~nit~~Nt~g~---------------~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG~vD- 150 (298)
T PF01095_consen 91 AENITFENTAGP---------------SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEGNVD- 150 (298)
T ss_dssp EEEEEEEEHCSG---------------SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE-
T ss_pred eeeeEEecCCCC---------------cccceeeeee-cCCcEEEEEeEEccccceeeec---cceeEEEeeEEEecCc-
Confidence 999999984210 0123456666 4578889999999988877542 3355667777775422
Q ss_pred eeecCC
Q 010437 357 MLLGHS 362 (510)
Q Consensus 357 mLiG~s 362 (510)
+++|..
T Consensus 151 FIfG~~ 156 (298)
T PF01095_consen 151 FIFGNG 156 (298)
T ss_dssp EEEESS
T ss_pred EEECCe
Confidence 245644
No 60
>PLN02314 pectinesterase
Probab=91.66 E-value=3.8 Score=46.44 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=75.4
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-e------cCc------eEEEEccccEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A------NGG------CITIQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~------~G~------gI~i~~asNVI 276 (510)
|+.+||.. ...++||+=+.|+.+ +.+.| ..|+|+.|.|..-+| . +|. .+. ..+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~-v~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFA-AAGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEE-EEcCCeE
Confidence 67788754 234677776777765 45556 468999999866443 2 121 112 2689999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCC-----------------CCcEEEee
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCA-----------------DGLVDAVM 338 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~-----------------DGlIDv~~ 338 (510)
.|||.|++-.+. ...-|+-+. ++...-+.+|.|.-.. .|.+|++-
T Consensus 369 a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 431 (586)
T PLN02314 369 AKDMGFINTAGA-----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIF 431 (586)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceec
Confidence 999999985210 123455554 5677889999887543 46666666
Q ss_pred CCceEEEEccccc
Q 010437 339 GSTAITISNNHMT 351 (510)
Q Consensus 339 gStnITISnn~F~ 351 (510)
|.-..-+++|.|.
T Consensus 432 G~a~avf~~c~i~ 444 (586)
T PLN02314 432 GNAAVVFQNCNIQ 444 (586)
T ss_pred cCceeeeeccEEE
Confidence 7777777777774
No 61
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=91.52 E-value=1.7 Score=48.84 Aligned_cols=99 Identities=13% Similarity=0.244 Sum_probs=63.1
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-e------cCce-----EEEEccccEEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A------NGGC-----ITIQFVTNVII 277 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~------~G~g-----I~i~~asNVII 277 (510)
|+.+||.. ...++|||=+.|+.+ +.+.| .+|+||.|.|...+| . +|.+ -....+++++.
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~~~~F~a 327 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAVGDGFIA 327 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEECCceEE
Confidence 67778754 234677777778754 55666 469999999876544 2 2221 01125899999
Q ss_pred EeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcE
Q 010437 278 HGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLV 334 (510)
Q Consensus 278 RnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlI 334 (510)
+||.|++-.. . ...-|+-+. .++.+-+.+|.|.-..|=|.
T Consensus 328 ~nitf~Ntag--------------~---~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy 368 (548)
T PLN02301 328 QDIWFQNTAG--------------P---EKHQAVALRVSADQAVINRCRIDAYQDTLY 368 (548)
T ss_pred EeeEEEECCC--------------C---CCCceEEEEecCCcEEEEeeeeeeccccce
Confidence 9999998421 0 122444443 46788899999887555443
No 62
>PLN02634 probable pectinesterase
Probab=91.39 E-value=3.7 Score=44.03 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=70.4
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEEe-----------cCc--------eEEEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHIA-----------NGG--------CITIQ 270 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I~-----------~G~--------gI~i~ 270 (510)
|+.+||.. +..+++|+=+.|+-+ +.|.| .+|+||.|.|...+|. +|. .++ .
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~-V 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFYR--EKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVT-V 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceEE--EEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEE-E
Confidence 56666643 223455555667654 55666 5799999998765542 110 122 2
Q ss_pred ccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCCcEEEeeCCceEEEEccc
Q 010437 271 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNH 349 (510)
Q Consensus 271 ~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~ 349 (510)
.+++++.+||+|++..+.. . .+ ..++-|+-+. .++.+-+.+|.|.-..|=|.+- ...--..+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~------~---~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAP------M---PG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccC------C---CC---CCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeE
Confidence 5899999999999864311 0 01 1233444443 4677889999998877766542 2234444555
Q ss_pred cccC
Q 010437 350 MTHH 353 (510)
Q Consensus 350 F~~H 353 (510)
+..+
T Consensus 212 IeG~ 215 (359)
T PLN02634 212 IEGS 215 (359)
T ss_pred Eccc
Confidence 5543
No 63
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=91.08 E-value=1.4 Score=48.03 Aligned_cols=115 Identities=21% Similarity=0.218 Sum_probs=56.0
Q ss_pred CCCeEEeeC------CceEEEEeeeeeCCC--CCcEEEeeCCceEEEEccccccCCeeeeecCCCCccCCCcceEEEEEe
Q 010437 307 DGDAISIFG------SSHIWIDHNSLSHCA--DGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYN 378 (510)
Q Consensus 307 dgDaIsI~g------s~nVWIDHCSfS~~~--DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~~D~~~~VTihhN 378 (510)
++.+|.|-. .++.-|.|+-|..|. -|.|+++ |..-||.+|.|.+..=.+-+=|.. .-|+..|
T Consensus 183 ggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~gN 252 (425)
T PF14592_consen 183 GGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEGN 252 (425)
T ss_dssp ---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES-
T ss_pred CceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEecc
Confidence 455566532 356667777777653 4566663 567788888888765554444433 5788899
Q ss_pred eecCCCcC--CCceeec-ceEE-EEcceecCCcc----------eeeecC------CCceeEEeccEEeCCCCc
Q 010437 379 HFGEGLIQ--RMPRCRH-GYFH-VVNNDYTHWEM----------YAIGGS------ANPTINSQGNRYNAPLNA 432 (510)
Q Consensus 379 ~F~~~~~q--R~PRvR~-G~~H-VvNN~y~nw~~----------YAIGgs------~~~tI~seGNyF~a~~~~ 432 (510)
+|- +... ..+-+|. |.-| |+|||+++-.. +++-.+ .-..+.+.+|-|++...+
T Consensus 253 ~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~ 325 (425)
T PF14592_consen 253 VFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSP 325 (425)
T ss_dssp EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SEE
T ss_pred EEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCCc
Confidence 984 3333 3567774 7766 78999987532 222111 112367889999988743
No 64
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=90.87 E-value=2.3 Score=47.93 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=70.4
Q ss_pred hhhhhhcC-------CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceE-Ee------cCc------eEEEEccc
Q 010437 217 TLRHAVIQ-------DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVH-IA------NGG------CITIQFVT 273 (510)
Q Consensus 217 TLR~Av~q-------~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~-I~------~G~------gI~i~~as 273 (510)
|..+||.. ...++||+-+.|+.+ +.+.| ..|+||.|.|..-+ |. +|. .+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 67777744 112567776777765 55666 56899999986544 32 232 1223 689
Q ss_pred cEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCCC-----------------cEE
Q 010437 274 NVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCADG-----------------LVD 335 (510)
Q Consensus 274 NVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~DG-----------------lID 335 (510)
+++.+||.|++-.+. ...-|+-+. +++..-+.+|.|.-..|= .+|
T Consensus 341 ~F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVD 403 (566)
T PLN02713 341 NFVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVD 403 (566)
T ss_pred CeEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccc
Confidence 999999999985210 123455444 567777888988765554 445
Q ss_pred EeeCCceEEEEcccc
Q 010437 336 AVMGSTAITISNNHM 350 (510)
Q Consensus 336 v~~gStnITISnn~F 350 (510)
++-|.-.+-+++|.|
T Consensus 404 FIFG~a~avfq~C~i 418 (566)
T PLN02713 404 FIFGNAAVVFQNCNL 418 (566)
T ss_pred eecccceEEEeccEE
Confidence 545555555555555
No 65
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=90.65 E-value=2.5 Score=47.74 Aligned_cols=114 Identities=16% Similarity=0.265 Sum_probs=70.6
Q ss_pred hhhhhhcC----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCcceEE-e------cCc------eEEEEccccEE
Q 010437 217 TLRHAVIQ----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGANVHI-A------NGG------CITIQFVTNVI 276 (510)
Q Consensus 217 TLR~Av~q----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA~~~I-~------~G~------gI~i~~asNVI 276 (510)
|..+||.. +..++|||=+.|+.+ +.+.| ..|+||.|.|..-+| . +|. .+. ..+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~-v~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFA-VFGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeee-EECCCeE
Confidence 67777744 223566666677764 55666 458999999876443 2 121 112 2589999
Q ss_pred EEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceEEEEeeeeeCCCC-----------------CcEEEee
Q 010437 277 IHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHIWIDHNSLSHCAD-----------------GLVDAVM 338 (510)
Q Consensus 277 IRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nVWIDHCSfS~~~D-----------------GlIDv~~ 338 (510)
.|||.|++-.. ..+.-|+-+. .+..+-+.+|.|--..| |.+|++-
T Consensus 349 a~~itf~Ntag-----------------~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 411 (565)
T PLN02468 349 ARDMGFRNTAG-----------------PIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIF 411 (565)
T ss_pred EEEEEEEeCCC-----------------CCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceee
Confidence 99999997521 0123455544 57888899999976554 4445555
Q ss_pred CCceEEEEcccc
Q 010437 339 GSTAITISNNHM 350 (510)
Q Consensus 339 gStnITISnn~F 350 (510)
|.-.+-+++|.|
T Consensus 412 G~a~avfq~c~i 423 (565)
T PLN02468 412 GNSAVVFQNCNI 423 (565)
T ss_pred ccceEEEeccEE
Confidence 555555555555
No 66
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=89.65 E-value=3.6 Score=40.11 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=68.3
Q ss_pred cCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCe-EEee-CCceEEEEeeeeeCCCCCcEE-----
Q 010437 263 NGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDA-ISIF-GSSHIWIDHNSLSHCADGLVD----- 335 (510)
Q Consensus 263 ~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDa-IsI~-gs~nVWIDHCSfS~~~DGlID----- 335 (510)
++-+|.+.+++||+|.|..|....... .....|+ +.+. ++++|=|-+|-|.......+-
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~--------------~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~ 139 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFEC--------------NSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDS 139 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-G--------------GGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTT
T ss_pred CCCeEEEEecccEEEeccEEecccccc--------------ccccCCceEEEEeCCceEEEEchhccccccccccCCCCC
Confidence 455788899999999999999762210 0112343 5554 567777777777764332221
Q ss_pred -EeeCCceEEEEccccccCCe-eeeecCCCCccCCCcceEEEEEeeecCCCcCCCceeec-ceEEEEccee
Q 010437 336 -AVMGSTAITISNNHMTHHNE-VMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRH-GYFHVVNNDY 403 (510)
Q Consensus 336 -v~~gStnITISnn~F~~H~k-~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR~-G~~HVvNN~y 403 (510)
.......||+-+|+|.++.. .=++ +.-++-+.+|+| .+..+..=.+|. +.+-+-||||
T Consensus 140 ~~~~~~~~vT~hhN~f~~~~~R~P~~---------r~G~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 140 NSTDRGLRVTFHHNYFANTNSRNPRV---------RFGYVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp CGGGTTEEEEEES-EEEEEEE-TTEE---------CSCEEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred ccccCCceEEEEeEEECchhhCCCcc---------cccEEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 11223699999999976421 1011 122688999999 466666666665 5788888886
No 67
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=88.04 E-value=13 Score=40.73 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=63.9
Q ss_pred hhhhhhcC-----CCCeEEEEeeeeEEEeCceEEe---cCCeEEEeeCc---ceEEecC---------------------
Q 010437 217 TLRHAVIQ-----DKPLWIVFKRDMVIQLKQELIV---NSFKTIDGRGA---NVHIANG--------------------- 264 (510)
Q Consensus 217 TLR~Av~q-----~~Pr~IVF~~sg~I~L~~~L~I---~SnkTI~GqGA---~~~I~~G--------------------- 264 (510)
|+.+||.. ...+++||=+.|+-+ +.|.| .+|+||.|.|. ...|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 67777753 223566666667654 55666 57999999763 2445421
Q ss_pred -----------------ceE-------EEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCceE
Q 010437 265 -----------------GCI-------TIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSSHI 319 (510)
Q Consensus 265 -----------------~gI-------~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~nV 319 (510)
..+ ....++|++.+||.|++..+.+ . ....+-|+-+. .++.+
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v~ad~F~a~NLTf~Ntag~~--~-----------~~~~~QAVALrv~GDra 240 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWSQNNGLQLQNLTIENTLGDS--V-----------DAGNHPAVALRTDGDKV 240 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEEECCCEEEEeeEEEeCCCCC--C-----------CCCcceeEEEEEcCCcE
Confidence 000 1126899999999999854211 0 01123444443 46788
Q ss_pred EEEeeeeeCCCCCcEE
Q 010437 320 WIDHNSLSHCADGLVD 335 (510)
Q Consensus 320 WIDHCSfS~~~DGlID 335 (510)
-+.+|.|--..|=|..
T Consensus 241 ~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 241 QIENVNILGRQDTFFV 256 (422)
T ss_pred EEEeeEEecccceeee
Confidence 8999999887777765
No 68
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=87.72 E-value=8.1 Score=41.47 Aligned_cols=132 Identities=25% Similarity=0.352 Sum_probs=67.4
Q ss_pred ceEEecCCeEEEeeCcceEEe-cCc--eEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEee-CCc
Q 010437 242 QELIVNSFKTIDGRGANVHIA-NGG--CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIF-GSS 317 (510)
Q Consensus 242 ~~L~I~SnkTI~GqGA~~~I~-~G~--gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~-gs~ 317 (510)
..++|+.-+|+-|.-.. .+. .|. -+++ .+-++||++|++|+. |+ +. ..-+-+|-+. .++
T Consensus 45 g~~vInr~l~l~ge~ga-~l~g~g~G~~vtv-~aP~~~v~Gl~vr~s-----g~--~l--------p~m~agI~v~~~at 107 (408)
T COG3420 45 GNFVINRALTLRGENGA-VLDGGGKGSYVTV-AAPDVIVEGLTVRGS-----GR--SL--------PAMDAGIFVGRTAT 107 (408)
T ss_pred ccEEEccceeecccccc-EEecCCcccEEEE-eCCCceeeeEEEecC-----CC--Cc--------ccccceEEeccCcc
Confidence 45677777777776322 222 223 3444 589999999999953 11 00 1122333332 344
Q ss_pred eEEEEeeeeeCCCCCcEEEeeCCceEEEEccccc-----------------cCCeeeeecCCCCccCCCcceEEEEEeee
Q 010437 318 HIWIDHNSLSHCADGLVDAVMGSTAITISNNHMT-----------------HHNEVMLLGHSDSYTRDKQMQVTIAYNHF 380 (510)
Q Consensus 318 nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~-----------------~H~k~mLiG~sDs~~~D~~~~VTihhN~F 380 (510)
.--|.||.+-.+.-|.. + +++..+-|--|.+. +...+.+.|..-+|..|+..-=|=+||.|
T Consensus 108 ~A~Vr~N~l~~n~~Gi~-l-~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~ 185 (408)
T COG3420 108 GAVVRHNDLIGNSFGIY-L-HGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVF 185 (408)
T ss_pred cceEEcccccccceEEE-E-eccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccccccee
Confidence 45555555555444431 1 23333333333322 22334445555556666655556677777
Q ss_pred cCCCcCCCceeecce
Q 010437 381 GEGLIQRMPRCRHGY 395 (510)
Q Consensus 381 ~~~~~qR~PRvR~G~ 395 (510)
++ .|+--||||.
T Consensus 186 -~g--nr~~~~Rygv 197 (408)
T COG3420 186 -KG--NRFRDLRYGV 197 (408)
T ss_pred -cc--cchhheeeeE
Confidence 33 4555677663
No 69
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=86.44 E-value=6.7 Score=38.78 Aligned_cols=88 Identities=23% Similarity=0.209 Sum_probs=58.8
Q ss_pred ceEEEEccccccCC--eeeeecCCCCccCCCcceEEEEEeeecCCCcCCCceeec--c-----e--EEEEcceecCCcc-
Q 010437 341 TAITISNNHMTHHN--EVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRH--G-----Y--FHVVNNDYTHWEM- 408 (510)
Q Consensus 341 tnITISnn~F~~H~--k~mLiG~sDs~~~D~~~~VTihhN~F~~~~~qR~PRvR~--G-----~--~HVvNN~y~nw~~- 408 (510)
++|.|=||.+.+-. -.-|+|...+|..+....|.||||.|. ....+|...+ | + .-+.||+|+....
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY--~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFY--DTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEee--cCCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 46788888888753 244788877777777779999999995 3555566543 3 2 3689999987533
Q ss_pred -----eeee----cCCCceeEEeccEEeCCC
Q 010437 409 -----YAIG----GSANPTINSQGNRYNAPL 430 (510)
Q Consensus 409 -----YAIG----gs~~~tI~seGNyF~a~~ 430 (510)
|..+ .+.+-+..+.+|-+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 3332 123345667788877654
No 70
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=84.37 E-value=3.7 Score=46.21 Aligned_cols=130 Identities=21% Similarity=0.176 Sum_probs=83.2
Q ss_pred CCCeEEEEeeeeEEEeCc------e---EEe--cCCeEEEeeCcceEEecCc----eEEEEccccEEEEeeEEeecccCC
Q 010437 225 DKPLWIVFKRDMVIQLKQ------E---LIV--NSFKTIDGRGANVHIANGG----CITIQFVTNVIIHGLHVHDCKPTG 289 (510)
Q Consensus 225 ~~Pr~IVF~~sg~I~L~~------~---L~I--~SnkTI~GqGA~~~I~~G~----gI~i~~asNVIIRnLrI~~~~pg~ 289 (510)
..|+.|.|...-.+.+.. + +.+ -+|+||.+..-+ ..+. ||.+..++||.|.+.+|.-
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~---~~~~~NtDG~d~~sc~NvlI~~~~fdt----- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTID---ANRFDNTDGFDPGSCSNVLIEGCRFDT----- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEE---CCCCCCCCccccccceeEEEeccEEec-----
Confidence 478899998776665532 1 111 345555554322 1233 7888899999999999963
Q ss_pred CCccccCCCccCCccccCCCeEEee------------CCceEEEEeeeeeCCCCCcEEEe---eCCceEEEEccccccCC
Q 010437 290 NAMVRSSPTHYGWRTVADGDAISIF------------GSSHIWIDHNSLSHCADGLVDAV---MGSTAITISNNHMTHHN 354 (510)
Q Consensus 290 ~g~ir~s~~h~gwr~~sdgDaIsI~------------gs~nVWIDHCSfS~~~DGlIDv~---~gStnITISnn~F~~H~ 354 (510)
+.|+|.+. -+++|||-||-|+.++-+++.-. .+..+||+-+|.|.+-+
T Consensus 308 -----------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d 370 (542)
T COG5434 308 -----------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTD 370 (542)
T ss_pred -----------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCc
Confidence 22333332 25789999999999888886632 35689999999999977
Q ss_pred eeeeecCCCCccCCCcceEEEEEeee
Q 010437 355 EVMLLGHSDSYTRDKQMQVTIAYNHF 380 (510)
Q Consensus 355 k~mLiG~sDs~~~D~~~~VTihhN~F 380 (510)
.+.=|...+... .+.-+|+|+-|..
T Consensus 371 ~GLRikt~~~~g-G~v~nI~~~~~~~ 395 (542)
T COG5434 371 RGLRIKTNDGRG-GGVRNIVFEDNKM 395 (542)
T ss_pred ceeeeeeecccc-eeEEEEEEecccc
Confidence 666565443222 2233555555544
No 71
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=81.18 E-value=29 Score=32.44 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=32.4
Q ss_pred EEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCCCCcEEEe
Q 010437 275 VIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAV 337 (510)
Q Consensus 275 VIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~DGlIDv~ 337 (510)
+-|+||.|...... . ....++|.+..+++++|++|++..+..-.+.+.
T Consensus 94 ~~i~nl~i~~~~~~-------------~--~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 94 IQIRNLTIDGNGID-------------P--NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEETCGC-------------E---SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEEeeEEEccccc-------------C--CCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 44999999753210 0 012578888889999999999999766555653
No 72
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=68.39 E-value=42 Score=33.80 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=33.3
Q ss_pred ccCCCeEEeeCCc-eEEEEeeeeeCCCCCcEEEeeCCceEEEEccccccCCe
Q 010437 305 VADGDAISIFGSS-HIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNE 355 (510)
Q Consensus 305 ~sdgDaIsI~gs~-nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~H~k 355 (510)
.-..||+++.+.. .+.|.-.++....|..|-. .+...++|++-+..++.|
T Consensus 93 dVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~-Ng~Gtv~I~nF~a~d~GK 143 (215)
T PF03211_consen 93 DVCEDAATFKGDGGTVTIIGGGARNASDKVFQH-NGGGTVTIKNFYAEDFGK 143 (215)
T ss_dssp S-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEE
T ss_pred ccceeeeEEcCCCceEEEeCCcccCCCccEEEe-cCceeEEEEeEEEcCCCE
Confidence 3466888887766 7788888888888877776 555667777744444433
No 73
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=66.77 E-value=22 Score=37.82 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=74.7
Q ss_pred CCCeEEeeCCceEEEEeeeeeCCC-----CCcEEEeeCCceEEEEccccccCCeeeeecCCCCcc--CCCcceEEEEEee
Q 010437 307 DGDAISIFGSSHIWIDHNSLSHCA-----DGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYT--RDKQMQVTIAYNH 379 (510)
Q Consensus 307 dgDaIsI~gs~nVWIDHCSfS~~~-----DGlIDv~~gStnITISnn~F~~H~k~mLiG~sDs~~--~D~~~~VTihhN~ 379 (510)
-+-++.|..+.||+|-..+|.... +-.|.+..++.+|=|-+|-|..|....---|.|+-. ......|||-+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 456788989999999999998765 445677778899999999998864431111223211 1235689999999
Q ss_pred ecCCCcCC---Cceee---cce--EEEEcceecCCcce--eeecCCCceeEEeccEEeCC
Q 010437 380 FGEGLIQR---MPRCR---HGY--FHVVNNDYTHWEMY--AIGGSANPTINSQGNRYNAP 429 (510)
Q Consensus 380 F~~~~~qR---~PRvR---~G~--~HVvNN~y~nw~~Y--AIGgs~~~tI~seGNyF~a~ 429 (510)
|.+|-..- +|--. -|+ +-+-+|+|.|--.- .+.- ..+-+-+|||+.-
T Consensus 195 fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRf---G~vHvyNNYy~~~ 251 (345)
T COG3866 195 FHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRF---GMVHVYNNYYEGN 251 (345)
T ss_pred eecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEe---eEEEEeccccccC
Confidence 96443221 11110 243 44578888874221 1111 1356778999843
No 74
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=58.60 E-value=7.3 Score=34.29 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=8.9
Q ss_pred ceecchhHHHHHHHHHHHH
Q 010437 66 MAVTQRGICLCFAVVLMLF 84 (510)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~ 84 (510)
|| |+.+++|.++|++||+
T Consensus 1 Ma-SK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLL 18 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHH
Confidence 66 6666544444433333
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=52.98 E-value=21 Score=26.02 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=25.8
Q ss_pred eEEeeCCceEEEEeeeeeCCCCCcEEEeeCCceEEEEcccccc
Q 010437 310 AISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTH 352 (510)
Q Consensus 310 aIsI~gs~nVWIDHCSfS~~~DGlIDv~~gStnITISnn~F~~ 352 (510)
||.+..+++..|..+.++...||. .+ ..+.+-+|..|.+.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI-~~-~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGI-YL-TDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEE-EE-EeCCCCEeECCEEEc
Confidence 456666666667777777777743 44 345666666666543
No 76
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=45.97 E-value=15 Score=35.20 Aligned_cols=29 Identities=34% Similarity=0.690 Sum_probs=20.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccccccc
Q 010437 29 SSLSLSLSLLLFLSSFLFFLGCVWGVGKR 57 (510)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (510)
+|+.+++.+.|||...|--+||||---.|
T Consensus 8 ~sv~i~igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 8 TSVAISIGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred chHHHHHHHHHHHHHHHHhcceEEEeecc
Confidence 35556666677777777889999975443
No 77
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=41.94 E-value=1.1e+02 Score=31.53 Aligned_cols=89 Identities=21% Similarity=0.171 Sum_probs=52.9
Q ss_pred cCCeEEEeeCcceE-EecCceEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeC------CceE
Q 010437 247 NSFKTIDGRGANVH-IANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFG------SSHI 319 (510)
Q Consensus 247 ~SnkTI~GqGA~~~-I~~G~gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~g------s~nV 319 (510)
.++.+|.|.+-... +..|.|+.|..+ +..|+|-+|+++. .+||.+.+ ..++
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~~ 153 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGINGN 153 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccce
Confidence 56667777531110 123667888765 9999999999752 24454433 2345
Q ss_pred EEEeeeeeCCCCCcEEEee--CCceEEEEccccccCCeeee
Q 010437 320 WIDHNSLSHCADGLVDAVM--GSTAITISNNHMTHHNEVML 358 (510)
Q Consensus 320 WIDHCSfS~~~DGlIDv~~--gStnITISnn~F~~H~k~mL 358 (510)
.|.-+++.....|. ++.. .....+|.||+|++-..++.
T Consensus 154 vI~GN~~~~~~~Gi-~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 154 VISGNSIYFNKTGI-SISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred EeecceEEecCcCe-EEEcccCCccceeeccEEEeCCcCeE
Confidence 56666777666665 3311 12224789999997655443
No 78
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=36.95 E-value=1.6e+02 Score=30.85 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=13.2
Q ss_pred EEccccEEEEeeEEeec
Q 010437 269 IQFVTNVIIHGLHVHDC 285 (510)
Q Consensus 269 i~~asNVIIRnLrI~~~ 285 (510)
+.+++|..|.|.+|.++
T Consensus 15 Lf~~~d~~l~~~~f~dG 31 (277)
T PF12541_consen 15 LFGSHDLRLENCTFADG 31 (277)
T ss_pred ccccCCCEEEeeEEeCC
Confidence 45678899999998854
No 79
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=36.61 E-value=5.7 Score=31.19 Aligned_cols=22 Identities=45% Similarity=1.058 Sum_probs=14.7
Q ss_pred Cccccccccccccccccccc-cc
Q 010437 163 IDDCWRCDGNWHKNRKRLAD-CG 184 (510)
Q Consensus 163 id~cwrc~~~w~~~rq~LA~-~A 184 (510)
-|+|-||+..|+..|-.-|. |+
T Consensus 20 yd~ci~cqgkwagkrgkcaahc~ 42 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCAAHCI 42 (55)
T ss_dssp HHHH--TTGGGTT-HHHHHHHHH
T ss_pred hhHHheecceeccccCcchhhee
Confidence 48999999999998876544 44
No 80
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=35.53 E-value=4.7e+02 Score=26.25 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=44.3
Q ss_pred CceEEEEeeeeeCC-CCCcEEEe-----eCCceEEEEccccccCCeeeee--cCCCCccCC-CcceEEEEEeeecCCCcC
Q 010437 316 SSHIWIDHNSLSHC-ADGLVDAV-----MGSTAITISNNHMTHHNEVMLL--GHSDSYTRD-KQMQVTIAYNHFGEGLIQ 386 (510)
Q Consensus 316 s~nVWIDHCSfS~~-~DGlIDv~-----~gStnITISnn~F~~H~k~mLi--G~sDs~~~D-~~~~VTihhN~F~~~~~q 386 (510)
+++|+|.|+.|..+ ....++.. .|-.+..|-||.|+.-..+.+. -......+. .+...++..|.+ -++.+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eeeee
Confidence 57999999999985 33333322 4556789999999953332222 111112333 366677778888 47777
Q ss_pred C
Q 010437 387 R 387 (510)
Q Consensus 387 R 387 (510)
|
T Consensus 112 r 112 (198)
T PF08480_consen 112 R 112 (198)
T ss_pred c
Confidence 7
No 81
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=32.26 E-value=5.5e+02 Score=27.09 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=21.4
Q ss_pred ceEEEEEeeecCCCcCCCceeecceEEEEcceecC
Q 010437 371 MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTH 405 (510)
Q Consensus 371 ~~VTihhN~F~~~~~qR~PRvR~G~~HVvNN~y~n 405 (510)
-++|+.++.. + +-.|.|---.+.+.|.-+.+
T Consensus 194 kNltliNC~I-~---g~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 194 KNLTLINCTI-E---GTQPLCYCDNLVLENCTMID 224 (277)
T ss_pred CCeEEEEeEE-e---ccCccEeecceEEeCcEeec
Confidence 4789999988 3 34477765566777777664
No 82
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=31.63 E-value=86 Score=33.48 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=25.9
Q ss_pred ccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCCC
Q 010437 271 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCA 330 (510)
Q Consensus 271 ~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~~ 330 (510)
+.+..||||++-+++.|. +.....-|.-.+.|+|..|..||...+-++.
T Consensus 266 ngkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsa 314 (464)
T PRK10123 266 NGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSA 314 (464)
T ss_pred CCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEecccccccc
Confidence 445566666666655442 1111112334456677777777766555443
No 83
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=25.61 E-value=59 Score=30.02 Aligned_cols=34 Identities=32% Similarity=0.364 Sum_probs=28.9
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcccccccccccc
Q 010437 29 SSLSLSLSLLLFLSSFLFFLGCVWGVGKREKIKE 62 (510)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (510)
+.|++.|.+|.++.|...|+.--|-+|.|.--|-
T Consensus 8 a~Ls~~ln~LAL~~S~tA~~sSyWC~GTqKVpKP 41 (118)
T PF07803_consen 8 ALLSLILNLLALAFSTTALLSSYWCEGTQKVPKP 41 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccceecCCC
Confidence 4688888888888889999999999999976664
No 84
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=25.56 E-value=83 Score=27.65 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=24.7
Q ss_pred cccccccccceecchhHHHHHHHHHHHHHHhh
Q 010437 57 REKIKENNAMAVTQRGICLCFAVVLMLFVGVL 88 (510)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (510)
.||+|.|.--.+---|++|.+.+++||++...
T Consensus 28 ~~~Lka~kysIVI~FWv~LA~FV~~lF~iL~~ 59 (90)
T PF15183_consen 28 EEKLKANKYSIVIAFWVSLAAFVVFLFLILLY 59 (90)
T ss_pred HHHhcccceeeehhHHHHHHHHHHHHHHHHHH
Confidence 47888888888888899888777777665554
No 85
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=23.74 E-value=45 Score=28.53 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhccccccc
Q 010437 38 LLFLSSFLFFLGCVWGVGKR 57 (510)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~ 57 (510)
+++++.++|++-|.|-+-||
T Consensus 72 li~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 72 LIFFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 45555445555566766555
No 86
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=23.69 E-value=1.6e+02 Score=21.28 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=30.7
Q ss_pred eEEEEccccEEEEeeEEeecccCCCCccccCCCccCCccccCCCeEEeeCCceEEEEeeeeeCC
Q 010437 266 CITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHC 329 (510)
Q Consensus 266 gI~i~~asNVIIRnLrI~~~~pg~~g~ir~s~~h~gwr~~sdgDaIsI~gs~nVWIDHCSfS~~ 329 (510)
||.+..+++..|++=+|.+ ..|||.+..+++.-|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 4666667777777777764 34699999888888888877653
No 87
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=23.07 E-value=2.1e+02 Score=24.58 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccceecchhHHHHHHHHHHH
Q 010437 35 LSLLLFLSSFLFFLGCVWGVGKREKIKENNAMAVTQRGICLCFAVVLML 83 (510)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (510)
.++.|.+.-|+...++.+|.|.... ++-.-...-|-|..+.+++..++
T Consensus 9 ~tl~l~l~yf~~W~~~ay~~~~~~~-~~y~~i~GlPlWF~~SCi~~~il 56 (80)
T PF06196_consen 9 WTLGLTLIYFAWWYGFAYGLGNGDG-EEYKYIFGLPLWFFYSCIGGPIL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCc-cccccccCCcHHHHHHHHHHHHH
Confidence 4566667777778888888887654 44444555778877766654444
Done!