BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010439
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G + ++ L S+GA + D +G+TPL A ++G V K LI GA++NA GR
Sbjct: 48 GHKEVVKLLISKGADVNAKDSDGRTPLHHAA-ENGHKEVVKLLISKGADVNAKDSDGR-- 104
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
TPLHHAA+ G + V+LL+S GA+ + D T L +AR G+ VV+ +E G
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ----GG 160
Query: 148 WL 149
WL
Sbjct: 161 WL 162
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 55 IVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALV 114
++ ++G + K LIE GA++NA GR TPLHHAA+ G + V+LL+S GA+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGR--TPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 115 RNDDCHTALGVARIKGHINVVRAIES 140
++ D T L A GH VV+ + S
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLIS 91
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ ++ L GA + DK G+TPL +A + G + V K L+E GA++NA GR
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA+ G V+LLL GA+ ++ + T L +A GH+ VV+ +
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
G+TPL +A + G + V K L+E GA++NA GR TPLH AA+ G V+LLL G
Sbjct: 2 GRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58
Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAI 138
A+ ++ + T L +A GH+ VV+ +
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ ++ L GA + DK G+TPL +A + G + V K L+E GA++NA GR
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 102
Query: 88 TPLHHAAKRGLEPTVRLLLSCGA 110
TPLH AA+ G V+LLL GA
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAGA 125
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G + ++ L S+GA + D +G+TPL A + G + K LI GA++NA GR
Sbjct: 48 GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE-GHKEIVKLLISKGADVNAKDSDGR-- 104
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
TPLH+AAK G + V+LL+S GA+ + D T L +AR G+ +V+ +E G
Sbjct: 105 TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ----GG 160
Query: 148 WL 149
WL
Sbjct: 161 WL 162
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 55 IVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALV 114
++ ++G + K LIE GA++NA GR TPLH+AAK G + V+LL+S GA+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGR--TPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 115 RNDDCHTALGVARIKGHINVVRAIES 140
++ D T L A +GH +V+ + S
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLIS 91
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.6 bits (166), Expect = 9e-12, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + DK+G TPL +A + G + + + L++ GA++NA G
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 69
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA+ G V +LL GA+ ++ D +T L +A +GH+ +V +
Sbjct: 70 -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + DK+G TPL +A + G + + + L++ GA++NA G
Sbjct: 46 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY-- 102
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA+ G V +LL GA+ ++ T +A +GH ++ ++
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154
Score = 35.8 bits (81), Expect = 0.064, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G L AA+ G + VR+L++ GA+ ++ D +T L +A +GH+ +V +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 68.6 bits (166), Expect = 9e-12, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + DK+G TPL +A + G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 81
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA+ G V +LL GA+ ++ D +T L +A +GH+ +V +
Sbjct: 82 -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + DK+G TPL +A + G + + + L++ GA++NA G
Sbjct: 58 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY-- 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA+ G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + DK+G TPL +A + G + + + L++ GA++NA G
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 69
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA+ G V +LL GA+ ++ D +T L +A +GH+ +V +
Sbjct: 70 -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + DK+G TPL +A + G + + + L++ GA++NA G
Sbjct: 46 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY-- 102
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA+ G V +LL GA+ ++ T +A G+ ++ ++
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQ 154
Score = 35.4 bits (80), Expect = 0.067, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G L AA+ G + VR+L++ GA+ ++ D +T L +A +GH+ +V +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 65.5 bits (158), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G + ++ L SQGA D +GKTPL +A ++G V K L+ GA+ NA G+
Sbjct: 48 GHKEVVKLLLSQGADPNAKDSDGKTPLHLAA-ENGHKEVVKLLLSQGADPNAKDSDGK-- 104
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
TPLH AA+ G + V+LLLS GA+ + D T L +AR G+ VV+ +E G
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ----GG 160
Query: 148 WL 149
WL
Sbjct: 161 WL 162
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G+ D ++ L GA + D +GKTPL +A ++G V K L+ GA+ NA G+
Sbjct: 15 GNKDRVKDLLENGADVNASDSDGKTPLHLAA-ENGHKEVVKLLLSQGADPNAKDSDGK-- 71
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
TPLH AA+ G + V+LLLS GA+ ++ D T L +A GH VV+ + S
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 55 IVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALV 114
++ ++G + K L+E GA++NA G+ TPLH AA+ G + V+LLLS GA+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGK--TPLHLAAENGHKEVVKLLLSQGADPNA 65
Query: 115 RNDDCHTALGVARIKGHINVVRAIESH 141
++ D T L +A GH VV+ + S
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQ 92
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D +G TPL +A +G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNATDNDGYTPLHLAA-SNGHLEIVEVLLKNGADVNA--SDLTG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
TPLH AA G V +LL GA+ ++D HT L +A GH+ +V + H
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + D G TPL +A +G + + + L++ GA++NAY G
Sbjct: 58 GHLEIVEVLLKNGADVNASDLTGITPLHLAAA-TGHLEIVEVLLKHGADVNAYDNDGH-- 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AAK G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G + ++ L S+GA D +G+TPL A ++G + K L+ GA+ NA GR
Sbjct: 48 GHKEIVKLLLSKGADPNAKDSDGRTPLHYAA-ENGHKEIVKLLLSKGADPNAKDSDGR-- 104
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
TPLH+AA+ G + V+LLLS GA+ + D T L +AR G+ +V+ +E G
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ----GG 160
Query: 148 WL 149
WL
Sbjct: 161 WL 162
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 55 IVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALV 114
++ ++G + K L+E GA+ NA GR TPLH+AA+ G + V+LLLS GA+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGR--TPLHYAAENGHKEIVKLLLSKGADPNA 65
Query: 115 RNDDCHTALGVARIKGHINVVRAIES 140
++ D T L A GH +V+ + S
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLS 91
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A +G + + + L++ GA++NA+ G
Sbjct: 24 AGQDDEVRILMANGADVNATDWLGHTPLHLAA-KTGHLEIVEVLLKYGADVNAW--DNYG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA G V +LL GA+ ++ + T L +A GH+ +V +
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + D G TPL +A D+G + + + L++ GA++NA G
Sbjct: 58 GHLEIVEVLLKYGADVNAWDNYGATPLHLAA-DNGHLEIVEVLLKHGADVNA--KDYEGF 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L+ GA++NA G TPLH AAK G V +LL GA+ ++
Sbjct: 24 AGQDDEVRILMANGADVNA--TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA 81
Query: 121 TALGVARIKGHINVVRAIESH 141
T L +A GH+ +V + H
Sbjct: 82 TPLHLAADNGHLEIVEVLLKH 102
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
G+TPL +A + G + V K L+E GA++NA GR TPLH AA+ G V+LLL G
Sbjct: 2 GRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58
Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAI 138
A+ ++ + T L +A GH+ VV+ +
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ ++ L GA + DK G+TPL +A + G + V K L+E GA++NA GR
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69
Query: 88 TPLHHAAKRGLEPTVRLLLSCGA 110
TPLH AA+ G V+LLL GA
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGA 92
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A G + + + L++ GA++NAY G
Sbjct: 24 AGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAYDT--LG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA G V +LL GA+ ++D+ T L +A +GH+ +V +
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + D G TPL +A G + + + L++ GA++NA G
Sbjct: 58 GHLEIVEVLLKNGADVNAYDTLGSTPLHLAA-HFGHLEIVEVLLKNGADVNA--KDDNGI 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA RG V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQ 166
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNAEDTYGDTPLHLAAR-VGHLEIVEVLLKNGADVNAL--DFSG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AAKRG V +LL GA+ + T L +A GH+ +V +
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + +D G TPL +A G + + + L++ GA++NA G
Sbjct: 58 GHLEIVEVLLKNGADVNALDFSGSTPLHLAA-KRGHLEIVEVLLKYGADVNA--DDTIGS 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNARDFTGWTPLHLAA-HFGHLEIVEVLLKNGADVNA--KDSLG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA+RG V +LL GA+ + T L +A +GH+ +V +
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + D G TPL +A G + + + L++ GA++NA G
Sbjct: 58 GHLEIVEVLLKNGADVNAKDSLGVTPLHLAAR-RGHLEIVEVLLKNGADVNA--SDSHGF 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AAKRG V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNASDHVGWTPLHLAAY-FGHLEIVEVLLKNGADVNA--DDSLG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
TPLH AA RG V +LL GA+ + + T L +A GH+ +V + H
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + D G TPL +A D G + V + L++ GA++NA G
Sbjct: 58 GHLEIVEVLLKNGADVNADDSLGVTPLHLAA-DRGHLEVVEVLLKNGADVNA--NDHNGF 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D GKTPL +A + G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNAEDDSGKTPLHLAAI-KGHLEIVEVLLKHGADVNA--ADKMG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA G V +LL GA+ + T L +A GH+ +V +
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
N + + + S L+ I G ++ + L GA + DK G TPL +A + G +
Sbjct: 36 NGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAAL-YGHLE 94
Query: 66 VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
+ + L++ GA++NA G TPLH AA G V +LL GA+ ++ TA +
Sbjct: 95 IVEVLLKNGADVNA--TDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 126 ARIKGHINVVRAIE 139
+ G+ ++ ++
Sbjct: 153 SIDNGNEDLAEILQ 166
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
G G L AA+ G + VR+L++ GA+ +D T L +A IKGH+ +V + H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 8/109 (7%)
Query: 31 DAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
+ ++ L +GA ++ +D K G++PLI A ++ L ++ + L++ GAN+NA G +
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMVQLLLQHGANVNAQMYSG--SSA 186
Query: 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCH--TALGVARIKGHINVVR 136
LH A+ RGL P VR L+ GA++ ++N CH T L VAR + I+++R
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKN--CHNDTPLMVARSRRVIDILR 233
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR--------GGTPLHHAAKRGL 98
D++G TPL +A + L V + +N ++ GGR TPLH A L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRL-------VNLFQQGGRELDIYNNLRQTPLHLAVITTL 58
Query: 99 EPTVRLLLSCGANALVRNDDCHTALGVA 126
VRLL++ GA+ + + TA +A
Sbjct: 59 PSVVRLLVTAGASPMALDRHGQTAAHLA 86
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 33 IRALRSQGA----SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
+RAL A LE + +G T L VA +++ + L+E GA+I+A G +
Sbjct: 95 LRALLDSAAPGTLDLEARNYDGLTALHVA-VNTECQETVQLLLERGADIDAVDIKS-GRS 152
Query: 89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
PL HA + V+LLL GAN + +AL A +G + +VR +
Sbjct: 153 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA D G+TPL +A G + + + L+ GA++NA G
Sbjct: 12 AGQDDEVRILMANGADANAYDHYGRTPLHMAAA-VGHLEIVEVLLRNGADVNAVDTNGT- 69
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
TPLH AA G V +LL GA+ ++ T L +A GH+ +V + H
Sbjct: 70 -TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L+ G ++ + L GA + +D G TPL +A G + + + L++ GA++NA
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAA-SLGHLEIVEVLLKYGADVNA- 96
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
G TPL+ AA G V +LL GA+ ++ TA ++
Sbjct: 97 -KDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 141
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G L AA+ G + VR+L++ GA+A + T L +A GH+ +V +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVL 54
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAIDIXG-- 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
TPLH AA G V +LL GA+ + T L +A I GH+ +V + H
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + +D G TPL +A + G + + + L++ GA++NA G
Sbjct: 58 GHLEIVEVLLKHGADVNAIDIXGSTPLHLAAL-IGHLEIVEVLLKHGADVNAVDTWG--D 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAIDI--MG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
TPLH AA G V +LL GA+ + T L +A I GH+ +V + H
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + +D G TPL +A + G + + + L++ GA++NA G
Sbjct: 58 GHLEIVEVLLKHGADVNAIDIMGSTPLHLAAL-IGHLEIVEVLLKHGADVNAVDTWG--D 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A + G + + + L++ GA++NA G
Sbjct: 24 AGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAVDHAGM- 81
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPL AA G V +LL GA+ + + HT L +A + GH+ +V +
Sbjct: 82 -TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + +D G TPL +A + G + + + L++ GA++NA G
Sbjct: 58 GHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL-FGHLEIVEVLLKNGADVNA--NDMEGH 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D +G TPL +A G + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNAHDDQGSTPLHLAAW-IGHPEIVEVLLKHGADVNARDTDG-- 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
TPLH AA G V +LL GA+ ++ T L +A +GH+ +V + H
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
+N H + S L W+ G + + L GA + D +G TPL +A D+G + +
Sbjct: 40 VNAHDDQGSTPLHLAAWI--GHPEIVEVLLKHGADVNARDTDGWTPLHLAA-DNGHLEIV 96
Query: 68 KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
+ L++ GA++NA G TPLH AA RG V +LL GA+ ++ TA ++
Sbjct: 97 EVLLKYGADVNA--QDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 128 IKGHINVVRAIE 139
G+ ++ ++
Sbjct: 155 DNGNEDLAEILQ 166
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A SG + + + L++ GA+++A G
Sbjct: 24 AGQDDEVRILMANGADVNAADNTGTTPLHLAAY-SGHLEIVEVLLKHGADVDASDVFGY- 81
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
TPLH AA G V +LL GA+ + D T L +A G++ +V + H
Sbjct: 82 -TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
+G ++ + L GA ++ D G TPL +A G + + + L++ GA++NA G
Sbjct: 57 SGHLEIVEVLLKHGADVDASDVFGYTPLHLAAY-WGHLEIVEVLLKNGADVNAMDSDGM- 114
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AAK G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 -TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
G G L AA+ G + VR+L++ GA+ ++ T L +A GH+ +V + H
Sbjct: 11 GSDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L + AG D +R L + GA + D G TPL +A + G + + + L++ GA++NA
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAAN-GQLEIVEVLLKNGADVNAS 68
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
G TPLH AA G V +LL GA+ + T L +A + G + +V +
Sbjct: 69 DSAGI--TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 141 H 141
H
Sbjct: 127 H 127
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ + L GA + D G TPL +A D G + + + L++ GA++NAY G
Sbjct: 50 GQLEIVEVLLKNGADVNASDSAGITPLHLAAYD-GHLEIVEVLLKHGADVNAYDRAG--W 106
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
TPLH AA G V +LL GA+ + ALG+ IN
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGADV-----NAQDALGLTAFDISIN 147
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L+ GA++NA G TPLH AA G V +LL GA+ +
Sbjct: 16 AGQDDEVRILMANGADVNATDDNGL--TPLHLAAANGQLEIVEVLLKNGADVNASDSAGI 73
Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165
T L +A GH+ +V + H + R + P L AL+ QL
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQL 118
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + +D G TPL +A + SG + + + L++ GA+++A G
Sbjct: 24 AGQDDEVRILIANGADVNAVDNTGLTPLHLAAV-SGHLEIVEVLLKHGADVDA--ADVYG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA G V +LL GA+ + T L +A +GH+ +V +
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L+ ++G ++ + L GA ++ D G TPL +A M +G + + + L++ GA++NA+
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVNAF 109
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 137
G TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 110 --DMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
G G L AA+ G + VR+L++ GA+ ++ T L +A + GH+ +V + H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL + +++G + + + L++ A++NA G
Sbjct: 24 AGQDDEVRILMANGADVNANDWFGITPLHLV-VNNGHLEIIEVLLKYAADVNA--SDKSG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AA RG V +LL GA+ + +T L +A GH+ +V +
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ I L A + DK G TPL +A G + + + L++ GA++NA +G
Sbjct: 58 GHLEIIEVLLKYAADVNASDKSGWTPLHLAAY-RGHLEIVEVLLKYGADVNAM--DYQGY 114
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA+ G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 24 WVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
W A G + + L GA + + K ++ L +AC G ++ K L++ G ++N Y
Sbjct: 58 WAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD- 115
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
GGTPL +A V++LL GA+ + D + ++ +A G+ +V + IESH+
Sbjct: 116 -WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 174
Query: 143 CYFCGWLRE 151
++E
Sbjct: 175 LKLLQNIKE 183
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G TPL AA G V LL GA+ + +AL +A KG+ ++V+ +
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G + + L GA + + K ++ L +AC G ++ K L++ G ++N Y GG
Sbjct: 47 GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 103
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
TPL +A V++LL GA+ + D + ++ +A G+ +V + IESH+
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Query: 148 WLRE 151
++E
Sbjct: 164 NIKE 167
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G TPL AA G V LL GA+ + +AL +A KG+ ++V+ +
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + MD G TPL +A G + + + L++ GA++NA GR
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNASDSWGR- 81
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 82 -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
G G L A + G + VR+L++ GA+ +D T L +A +GH+ +V + H
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + MD G TPL +A G + + + L++ GA++NA GR
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNARDIWGR- 81
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 82 -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
G G L A + G + VR+L++ GA+ +D T L +A +GH+ +V + H
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + MD G TPL +A G + + + L++ GA++NA GR
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNASDIWGR- 81
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 82 -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
G G L A + G + VR+L++ GA+ +D T L +A +GH+ +V + H
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + +D++G TPL +A G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNALDEDGLTPLHLAA-QLGHLEIVEVLLKYGADVNA--EDNFG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA RG V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L+ GA++NA G TPLH AA+ G V +LL GA+ ++
Sbjct: 24 AGQDDEVRILMANGADVNALDEDGL--TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI 81
Query: 121 TALGVARIKGHINVVRAIESH 141
T L +A I+GH+ +V + H
Sbjct: 82 TPLHLAAIRGHLEIVEVLLKH 102
Score = 32.0 bits (71), Expect = 0.93, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G G L AA+ G + VR+L++ GA+ ++D T L +A GH+ +V +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL 66
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
W K+G TPL A + G K L+ GA++NA G TPLH AAK G V+L
Sbjct: 4 WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHAEIVKL 60
Query: 105 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
LL+ GA+ R+ D +T +A+ GH +V+ +++
Sbjct: 61 LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G + ++ L S+GA + K+G TPL +A +G + K L+ GA++NA G
Sbjct: 20 GHAEEVKKLLSKGADVNARSKDGNTPLHLAA-KNGHAEIVKLLLAKGADVNARSKD--GN 76
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRN 116
TP H A K G V+LL + GA+ R+
Sbjct: 77 TPEHLAKKNGHHEIVKLLDAKGADVNARS 105
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G + + L GA + + K ++ L +AC G ++ K L++ G ++N Y GG
Sbjct: 45 GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 101
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
TPL +A V++LL GA+ + D + ++ +A G+ +V + IESH+
Sbjct: 102 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 156
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G TPL AA G V LL GA+ + +AL +A KG+ ++V+ +
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
+GD + + L +GA + + + +G T L AC+D +++ K L+E GANIN +P G
Sbjct: 50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENGANIN--QPDNEG 106
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
PLH AA G L+S GA+ N + T L +
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L+Q I +VD ++ L GA++ D EG PL A G +++A+ LI GA++ A
Sbjct: 77 LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA-SCGYLDIAEYLISQGAHVGAV 135
Query: 81 RPGGRGGTPL 90
G TPL
Sbjct: 136 NS--EGDTPL 143
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL------INVAKTLIELG------- 74
G +D L SQGA + ++ EG TPL +A ++ +N IE
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176
Query: 75 -----------ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
+IN R GGT LH AA +G ++LL+ + +++ D T L
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236
Query: 124 GVARIKGHINVVRAIESHIC 143
A G R + ++C
Sbjct: 237 HAAAHWGKEEACRILVENLC 256
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 23 QWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
QW+ +G ++ +R +S G +L +G T ++ K LI+ ++N
Sbjct: 183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL------------KLLIQARYDVNI--K 228
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
G TPLH AA G E R+L+ + N TA VA
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D++G TPL +A D + + + L++ GA++NA+ G
Sbjct: 24 AGQDDEVRILMANGADVNANDRKGNTPLHLAA-DYDHLEIVEVLLKHGADVNAH--DNDG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L+ GA++NA +G TPLH AA V +LL GA+ ++D
Sbjct: 24 AGQDDEVRILMANGADVNA--NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
Query: 121 TALGVARIKGHINVVRAIESH 141
T L +A + GH+ +V + H
Sbjct: 82 TPLHLAALFGHLEIVEVLLKH 102
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
G G L AA+ G + VR+L++ GA+ + +T L +A H+ +V + H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH 69
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + DK G TPL +A M+ L + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHL-EIVEVLLKNGADVNAIDAIGE- 81
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH A G V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 82 -TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L+ GA++NA G TPLH AA V +LL GA+ +
Sbjct: 24 AGQDDEVRILMANGADVNAEDKVGL--TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE 81
Query: 121 TALGVARIKGHINVVRAIESH 141
T L + + GH+ +V + H
Sbjct: 82 TPLHLVAMYGHLEIVEVLLKH 102
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L+ V ++D ++ L +G S G TPL +A + + VA++L++ G + NA
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ-VEVARSLLQYGGSANA- 240
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
+G TPLH AA+ G V LLLS AN + N T L + +GH+ V +
Sbjct: 241 -ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Query: 141 HICYFCGWLREFYGP 155
H R Y P
Sbjct: 300 HGVMVDATTRMGYTP 314
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L+ G + ++ L +GAS + + +TPL +A +G VAK L++ A +NA
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA-RAGHTEVAKYLLQNKAKVNAK 76
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
+ TPLH AA+ G V+LLL AN + HT L +A +GH+ V A+
Sbjct: 77 AKDDQ--TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G V L G ++ + G TPL VA G I + K L++ A++NA G
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVAS-HYGNIKLVKFLLQHQADVNAKTK--LGY 345
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
+PLH AA++G V LLL GA+ + D T L +A+ G+I+V ++
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH A+ G P V+ LL GA+ V N T L +A GH V + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 66
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G + ++ L A+ G TPL +A + G + L+E A+ +G
Sbjct: 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAARE-GHVETVLALLEKEASQACMTK--KGF 147
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH AAK G LLL A+ + T L VA ++++V+ +
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D G TPL +A M G + + + L++ GA++NA G G
Sbjct: 24 AGQDDEVRILTANGADVNANDYWGHTPLHLAAM-LGHLEIVEVLLKNGADVNA--TGNTG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
TPLH AA V +LL GA+ ++ TA ++ G+ ++ ++
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 32.3 bits (72), Expect = 0.62, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L GA++NA G TPLH AA G V +LL GA+ +
Sbjct: 24 AGQDDEVRILTANGADVNANDYWGH--TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR 81
Query: 121 TALGVARIKGHINVVRAIESH 141
T L +A H+ +V + H
Sbjct: 82 TPLHLAAWADHLEIVEVLLKH 102
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G G L AA+ G + VR+L + GA+ + HT L +A + GH+ +V +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVL 66
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G+++ +R L GA + KE ++ L +A G ++ L+E +IN Y GG
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIY--DWNGG 103
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
TPL +A + V LL+ GA+ D +T + +A G+ V + IE+HI
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
+P RG TPL A+ G TVR LL GA+ + + +AL +A G+ ++V
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIV 85
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
+ LL+ I GD+ ++ L G+ D G TPL AC + G + V + L++ A +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC-NHGHLKVVELLLQHKALV 69
Query: 78 NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
N G + +PLH AAK G V+LLLS GA+
Sbjct: 70 NT--TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
RG T LH A+ +G P+V LL G++ V++ T L A GH+ VV + H
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G+++ +R L GA + KE ++ L +A G ++ L+E +IN Y GG
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIYD--WNGG 103
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
TPL +A V LL+ GA+ D +T + +A G+ V + IE+HI
Sbjct: 104 TPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
+P RG TPL A+ G TVR LL GA+ + + +AL +A G+ ++V
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIV 85
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
C++C E + PCGH C SC +++++ CPVCR+++ V +Y
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVY 66
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 22 YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
+ W + GD+D ++ ++G + + G+ PL A D G + + + L+ GA+INA
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 63
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
P TPL A G V+LLLS GA+ V+ D TAL
Sbjct: 64 -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 59 MDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
+ +G ++ K + G ++N GGR PLH+AA G + LL GA+ +
Sbjct: 10 LKNGDLDEVKDYVAKGEDVNRTLEGGR--KPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 119 CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL 161
T L A +GH++ V+ + S G + GP L AL
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSK-----GADKTVKGPDGLTAL 105
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
L S+G+++ D GKTPL+ + + G ++ L+E GAN+N G TPL A+K
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVNDRNLEGE--TPLIVASK 143
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
G V+ LL GA+ R+ TA ARI G V++
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 1 MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
+ Q+L+ + ++ ++ L+ ++ G +AI L LE D EG T LI A +
Sbjct: 20 INQNLDFLRNYRDSYNRTPLMVACML-GMENAIDKLVENFDKLEDKDIEGSTALIWAVKN 78
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+ L +A+ L+ G+N+N G+ TPL + G LL GAN RN +
Sbjct: 79 NRL-GIAEKLLSKGSNVNTKDFSGK--TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
Query: 121 TALGVARIKGHINVVRAI 138
T L VA G +V+ +
Sbjct: 136 TPLIVASKYGRSEIVKKL 153
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
L++ + + +++ + L+E GAN+N G G TPLH+A + E V LLL GA+ +
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 114 VRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 160
+R + T +A I G + +++ S + C F G+ +F+EA
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 132
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 21 LYQWVIAGDVDAIRALRSQGASL----------EWMDKEGKTPLIVACMDSGLINVAKTL 70
+ + G V A++ L +GA++ E + K G T L+ A + G + V K L
Sbjct: 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA-EKGHVEVLKIL 187
Query: 71 I-ELGANINAYRPGGRGGT--PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
+ E+GA++NA GR L + +E LLL GA+ VR + T L +A
Sbjct: 188 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247
Query: 128 IKGHINVVRAI--ESHI 142
K H+ +V+ + + HI
Sbjct: 248 EKKHLGLVQRLLEQEHI 264
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 29 DVDAI-RALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
DV+AI L GA + + GKTPLI+A L V + L + IN G+
Sbjct: 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK-- 274
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
T L A + L+ LL GA+ DC + AR ++V+ + SH G
Sbjct: 275 TALLLAVELKLKKIAELLCKRGAST-----DCGDLVMTARRNYDHSLVKVLLSH-----G 324
Query: 148 WLREFYGPS 156
+F+ P+
Sbjct: 325 AKEDFHPPA 333
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
MN + Q+K L+ AG VD L GA+++ ++ +TPL+ A ++ L
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL-EAV 60
Query: 68 KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
K LI+ GA ++ G T LH AAK+G V+ LLS G + DD
Sbjct: 61 KYLIKAGALVDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG D +R L + GA + D+ G TPL +A G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADVNAV--DAIG 80
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
TPLH AA G +LL GA+ ++ TA ++
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G G L AA+ G + VR+L++ GA+ +++ T L +A GH+ +V +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L+ GA++NA G TPL+ A G V +LL GA+ +
Sbjct: 24 AGQDDEVRILMANGADVNAKDEYGL--TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81
Query: 121 TALGVARIKGHINVVRAIESH 141
T L +A GH+ + + H
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKH 102
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 22 YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
+ W + GD+D ++ ++G + + G+ PL A D G + + + L+ GA+INA
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 68
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
P TPL A G V+LLLS GA+ V+ D TA
Sbjct: 69 -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 59 MDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
+ +G ++ K + G ++N GGR PLH+AA G + LL GA+ +
Sbjct: 15 LKNGDLDEVKDYVAKGEDVNRTLEGGR--KPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 119 CHTALGVARIKGHINVVRAIES 140
T L A +GH++ V+ + S
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLS 94
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG + + L G + D G +PL +A +G + K L+ GA++NA G
Sbjct: 50 AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGXDEIVKALLVKGAHVNAVNQ--NG 106
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
TPLH+AA + +LL GAN ++ TA+ A KG++ +V HI F
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV-----HILLF 160
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
+++ G++ + L AS D EG TPL +AC D + AK L+ GA+I Y
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DEERVEEAKFLVTQGASI--Y 199
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLL 105
TPL AK GL ++ L
Sbjct: 200 IENKEEKTPL-QVAKGGLGLILKRL 223
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
L++ + + +++ + L+E GAN+N G G TPLH+A + E V LLL GA+ +
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 114 VRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 160
+R + T +A I G + +++ S + C F G+ +F+EA
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 112
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 21 LYQWVIAGDVDAIRALRSQGASL----------EWMDKEGKTPLIVACMDSGLINVAKTL 70
+ + G V A++ L +GA++ E + K G T L+ A + G + V K L
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA-EKGHVEVLKIL 167
Query: 71 I-ELGANINAYRPGGRGGT--PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
+ E+GA++NA GR L + +E LLL GA+ VR + T L +A
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227
Query: 128 IKGHINVVRAI--ESHI 142
K H+ +V+ + + HI
Sbjct: 228 EKKHLGLVQRLLEQEHI 244
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
V + L GA + DK G PL AC G VA+ L++ GA +N TP
Sbjct: 55 VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 111
Query: 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
LH AA +G +LLL GA+ +N D +T L + +
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGK--TPLIVACMDSGLINVAKTLIELGA 75
D L + AGDV+ ++ L + S+ D EG+ TPL A ++V + L++ GA
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAA-GYNRVSVVEYLLQHGA 66
Query: 76 NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
+++A GG PLH+A G LL+ GA V + T L A KG +
Sbjct: 67 DVHAKDKGGL--VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 136 RAIESH 141
+ + H
Sbjct: 125 KLLLQH 130
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
V + L GA + DK G PL AC G VA+ L++ GA +N TP
Sbjct: 57 VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 113
Query: 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
LH AA +G +LLL GA+ +N D +T L + +
Sbjct: 114 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 4 SLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGK--TPLIVACMDS 61
++ S N RQ L + AGDV+ ++ L + S+ D EG+ TPL A
Sbjct: 2 AMGSGNSEADRQ-----LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAA-GY 54
Query: 62 GLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
++V + L++ GA+++A GG PLH+A G LL+ GA V + T
Sbjct: 55 NRVSVVEYLLQHGADVHAKDKGGL--VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 112
Query: 122 ALGVARIKGHINVVRAIESH 141
L A KG + + + H
Sbjct: 113 PLHEAAAKGKYEICKLLLQH 132
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L+ + G D I L GA+ + + PL +AC G V K L++ A N
Sbjct: 90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ-QGHFQVVKCLLDSNAKPN-- 146
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
+ G TPL +A G V LLL GA+ N+ +TAL A I+ H+ VV +
Sbjct: 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL 206
Query: 141 H 141
H
Sbjct: 207 H 207
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G ++ L A D G TPLI AC G + L++ GA+INA +G
Sbjct: 130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC-SGGHHELVALLLQHGASINA--SNNKGN 186
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
T LH A V LLL GA+ V N TA+ A
Sbjct: 187 TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 73 LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
LG N+ + G +PLH AA G + LLL GANA RN D L +A +GH
Sbjct: 77 LGVNVTSQD----GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF 132
Query: 133 NVVRAI 138
VV+ +
Sbjct: 133 QVVKCL 138
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG + + L G + D G +PL +A +G + K L+ GA++NA G
Sbjct: 50 AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLVKGAHVNAVNQ--NG 106
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
TPLH+AA + +LL GAN ++ TA+ A KG++ +V HI F
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV-----HILLF 160
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
+++ G++ + L AS D EG TPL +AC D + AK L+ GA+I Y
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DEERVEEAKFLVTQGASI--Y 199
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLL 105
TPL AK GL ++ L
Sbjct: 200 IENKEEKTPL-QVAKGGLGLILKRL 223
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 459 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
CVIC P G V GH+ C +C ++K + CPVCR I ++ Y
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 459 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
CVIC P G V GH+ C +C ++K + CPVCR I ++ Y
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
V + L GA + DK G PL AC G VA+ L++ GA +N TP
Sbjct: 59 VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 115
Query: 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
LH AA +G +LLL GA+ +N D +T L + +
Sbjct: 116 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 1 MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGK--TPLIVAC 58
MG SL N RQ L + AGDV+ ++ L + S+ D EG+ TPL A
Sbjct: 3 MGISLG--NSEADRQ-----LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAA 54
Query: 59 MDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
++V + L++ GA+++A GG PLH+A G LL+ GA V +
Sbjct: 55 -GYNRVSVVEYLLQHGADVHAKDKGGL--VPLHNACSYGHYEVAELLVKHGAVVNVADLW 111
Query: 119 CHTALGVARIKGHINVVRAIESH 141
T L A KG + + + H
Sbjct: 112 KFTPLHEAAAKGKYEICKLLLQH 134
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 458 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
+C +C + V +PCGH+ C C ++ CP+CR+ I +R +
Sbjct: 26 TCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIKGTVRTF 72
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG + + L G + D G +PL +A +G + K L+ GA +NA G
Sbjct: 51 AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLGKGAQVNAVNQ--NG 107
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH+AA + +LL GAN ++ TA+ A KG++ ++ +
Sbjct: 108 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 32/132 (24%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
AG + ++AL +GA + +++ G TPL A +A L+E GAN +A
Sbjct: 84 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEAT 142
Query: 80 --YRPGGRGG----------------------TPLHHAAKRGLEPTVRLLLSCGANALVR 115
+R +G TPLH A +LL+S GA+ +
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 202
Query: 116 NDDCHTALGVAR 127
N + T L VA+
Sbjct: 203 NKEEKTPLQVAK 214
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI 64
V+ + L SQGAS+ +KE KTPL VA GLI
Sbjct: 186 VEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 220
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
AG D +R L + GA + DK G TPL +A + G + V K L+E GA++NA G+
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVNAQDKFGK 73
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G G L AA+ G + VR+L++ GA+ ++ + T L +A GH+ VV+ +
Sbjct: 3 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 58
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L+ GA++ A G TPLH AA+ G V+LLL GA+ ++
Sbjct: 16 AGQDDEVRILMANGADVAA--KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGK 73
Query: 121 TALGVARIKGHINVVRAIE 139
TA ++ G+ ++ ++
Sbjct: 74 TAFDISIDNGNEDLAEILQ 92
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
AG + + L G + D G +PL +A +G + K L+ GA +NA G
Sbjct: 50 AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLGKGAQVNAVNQ--NG 106
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPLH+AA + +LL GAN ++ TA+ A KG++ ++ +
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 32/132 (24%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
AG + ++AL +GA + +++ G TPL A +A L+E GAN +A
Sbjct: 83 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEAT 141
Query: 80 --YRPGGRGG----------------------TPLHHAAKRGLEPTVRLLLSCGANALVR 115
+R +G TPLH A +LL+S GA+ +
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 201
Query: 116 NDDCHTALGVAR 127
N + T L VA+
Sbjct: 202 NKEEKTPLQVAK 213
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI 64
V+ + L SQGAS+ +KE KTPL VA GLI
Sbjct: 185 VEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 219
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 38 SQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
+ GA + W++ ++ TPLI A + L+ + L++ GAN+N GRG PLHHA
Sbjct: 221 AHGADVNWVNGGQDNATPLIQATAANSLL-ACEFLLQNGANVNQADSAGRG--PLHHATI 277
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
G L L GA+ R+ + L +A + ++V
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 38 SQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
+ GA + W++ ++ TPLI A + L+ + L++ GAN+N GRG PLHHA
Sbjct: 221 AHGADVNWVNGGQDNATPLIQATAANSLL-ACEFLLQNGANVNQADSAGRG--PLHHATI 277
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
G L L GA+ R+ + L +A + ++V
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G + L ++G ++ MD+ G TPL+ A + ++ + L+ ++N +
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK-N 178
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
T LH A G + LLL GAN +N +AL +A+ + ++ ++ ++
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 34 RALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93
R L G + DKE T L A +++ I++ K I GA ++ G TPLH A
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHWAAINNR-IDLVKYYISKGAIVDQL-GGDLNSTPLHWA 83
Query: 94 AKRGLEPTVRLLLSCGAN-ALVRNDDCHTALGVARIKGHINVV 135
++G V L+ GA+ +L+ + C + + +A GH ++V
Sbjct: 84 TRQGHLSMVVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIV 125
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 38 SQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
+ GA + W++ ++ TPLI A + L+ + L++ GAN+N GRG PLHHA
Sbjct: 221 AHGADVNWVNGGQDNATPLIQATAANSLL-ACEFLLQNGANVNQADSAGRG--PLHHATI 277
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
G L L GA+ R+ + L +A + ++V
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 458 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
+C +C + V +PCGH+ C C ++ CP+CR I +R +
Sbjct: 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSLRK----CPICRGIIKGTVRTF 343
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L++ + G + ++ L GA + + + TPL AC+ SG + L++ GA++
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV-SGSWDCVNLLLQHGASV--- 95
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
+P +P+H AA+RG V L++ G N
Sbjct: 96 QPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
+++ I G ++R L SQG ++ + + +PL AC+ G ++ K L++ GA +N
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQVNGV 65
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPL +A G V LLL GA+ +D AR +GH+ V ++
Sbjct: 66 TADWH--TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSL 120
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG- 86
G V+ + +L + G +++ TPL +AC + V K L+E GA++N G+G
Sbjct: 112 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV-KKLLESGADVNQ----GKGQ 166
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
+PLH A+ E LL+ GA+ +N +
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAE 198
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
+P+H AA G + ++R L+S G + D + L A + GH++ V+ + H G
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 148 WLREFYGPSF 157
+++ P F
Sbjct: 65 VTADWHTPLF 74
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTV 102
LE + +G TPL VA + + + L + GA++N P G TPLH A + +
Sbjct: 151 LEAENYDGHTPLHVAVIHKD-AEMVRLLRDAGADLNKPEPTC-GRTPLHLAVEAQAASVL 208
Query: 103 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
LLL GA+ R T LG A ++ + + R + +H
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA-RIKGH 131
G T LH AA G TV L + GA LV HTAL +A R++ H
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAH 91
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTV 102
LE + +G TPL VA + + + L + GA++N P G TPLH A + +
Sbjct: 151 LEAENYDGHTPLHVAVIHKD-AEMVRLLRDAGADLNKPEPTC-GRTPLHLAVEAQAASVL 208
Query: 103 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
LLL GA+ R T LG A ++ + + R + +H
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA-RIKGH 131
G T LH AA G TV L + GA LV HTAL +A R++ H
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAH 91
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
C+IC E +E + C H + C C++E +K +CP+CR I
Sbjct: 56 CIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
C+IC E +E + C H + C C++E +K +CP+CR I
Sbjct: 56 CIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 97
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G V+ +RAL GA+ + G+ P+ V M S VA+ L+ GA N P
Sbjct: 23 GRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA--RVAELLLLHGAEPNCADPATL-T 79
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
P+H AA+ G T+ +L GA VR+ + +A GH +V R + +
Sbjct: 80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L++ + G + ++ L GA + + + TPL AC+ SG + L++ GA++
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV-SGSWDCVNLLLQHGASV--- 151
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
+P +P+H AA+RG V L++ G N
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
+++ I G ++R L SQG ++ + + +PL AC+ G ++ K L++ GA +N
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQVNGV 121
Query: 81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
TPL +A G V LLL GA+ +D AR +GH+ V ++
Sbjct: 122 TADWH--TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSL 176
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG- 86
G V+ + +L + G +++ TPL +AC + V K L+E GA++N G+G
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV-KKLLESGADVNQ----GKGQ 222
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRN 116
+PLH + E LL+ GA+ +N
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKN 252
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
+P+H AA G + ++R L+S G + D + L A + GH++ V+ + H G
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 148 WLREFYGPSF 157
+++ P F
Sbjct: 121 VTADWHTPLF 130
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
AG D +R L + GA + DK+G TPL +A + G + + + L++ GA++NA G+
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAQDKFGK 69
Score = 35.4 bits (80), Expect = 0.070, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G L AA+ G + VR+L++ GA+ ++ D +T L +A +GH+ +V +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L+ GA++NA G TPLH AA+ G V +LL GA+ ++
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 69
Query: 121 TALGVARIKGHINVVRAIE 139
TA ++ G+ ++ ++
Sbjct: 70 TAFDISIDNGNEDLAEILQ 88
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
C+IC E +E + C H + C C++E +K +CP+CR I
Sbjct: 67 CIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 108
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
AG D +R L + GA + DK G TPL +A + G + V K L+E GA++ A G+
Sbjct: 34 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQDKFGK 91
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
G G L AA+ G + VR+L++ GA+ ++ + T L +A GH+ VV+ +
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 61 SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
+G + + L+ GA++ A G TPLH AA+ G V+LLL GA+ ++
Sbjct: 34 AGQDDEVRILMANGADVAA--KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91
Query: 121 TALGVARIKGHINVVRAIE 139
TA ++ G+ ++ ++
Sbjct: 92 TAFDISIDNGNEDLAEILQ 110
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 459 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
C +C + P +G + GH+ C C +K CP+C+ +I VI+++
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
+Q +S D L++ G++ +R + +DK G T L AC G ++ + L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH-GGHKDIVEXLF 126
Query: 72 ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
NI + G T LH AA +G V+LLL+ GA +RN + A A
Sbjct: 127 T-QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXA 180
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 27 AGDVDAIRALRSQGA--SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
AG D +R L + GA + +W+ G +PL +A G + + L+ G + +A
Sbjct: 12 AGQDDEVRILMANGAPFTTDWL---GTSPLHLAA-QYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
R TPLH AA G V +LL GA+ ++ TAL A H VV
Sbjct: 68 R--TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G L G S + K +TPL +A + G N+ + L++ GA++NA
Sbjct: 45 GHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GHANIVEVLLKHGADVNA--KDMLKM 101
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
T LH A + + V LL+ GA+ ++ C TA ++ G+ ++ ++
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
G +PLH AA+ G T +LL G + R T L +A +GH N+V + H
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 28 GDVDAIRAL-RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
GDV +R L + + +++ GKT L V M G +A L++ GA+ N G
Sbjct: 19 GDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSTAIALELLKQGASPNVQDTSGT- 75
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
+P+H AA+ G T+++L+ GA+ V + + +A +GH VV
Sbjct: 76 -SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 123
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G +D ++ L GA + D G P+ +A + V+ L A + +R RG
Sbjct: 85 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF----LAAESDLHRRDARGL 140
Query: 88 TPLHHAAKRGLEPTVRLL 105
TPL A +RG + V +L
Sbjct: 141 TPLELALQRGAQDLVDIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 28 GDVDAIRAL-RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
GDV +R L + + +++ GKT L V M G +A L++ GA+ N G
Sbjct: 13 GDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSTAIALELLKQGASPNVQDTSGT- 69
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
+P+H AA+ G T+++L+ GA+ V + + +A +GH VV
Sbjct: 70 -SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
G +D ++ L GA + D G P+ +A + V+ L A + +R RG
Sbjct: 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF----LAAESDLHRRDARGL 134
Query: 88 TPLHHAAKRGLEPTVRLL 105
TPL A +RG + V +L
Sbjct: 135 TPLELALQRGAQDLVDIL 152
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 49 EGKTPLIVACMDSGLINVAKTLIELGANINA--------YRPGG---RGGTPLHHAAKRG 97
EG+T L +A ++ +N+ + L+ GA+++A YRP G PL AA G
Sbjct: 74 EGQTALHIAVINQN-VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132
Query: 98 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF 157
E VRLL+ GA+ ++ +T L HI +++ ++ C L + G
Sbjct: 133 SEEIVRLLIEHGADIRAQDSLGNTVL-------HILILQPNKTFACQMYNLLLSYDGGDH 185
Query: 158 LEAL 161
L++L
Sbjct: 186 LKSL 189
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
V ++ L GA + DK G PL AC G V + L++ GA +NA TP
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVTELLLKHGACVNAMDLWQF--TP 127
Query: 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
LH AA + LLLS GA+ + N CH
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVN--CH 156
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
L +GA++ +K+ TPL VA + +V + L + GA +NA G+ T LH AA
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAA-ERAHNDVMEVLHKHGAKMNALDSLGQ--TALHRAAL 289
Query: 96 RGLEPTVRLLLSCGAN 111
G T RLLLS G++
Sbjct: 290 AGHLQTCRLLLSYGSD 305
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 56 VACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR 115
VA + VA+ L+ GAN+N TPLH AA+R + +L GA
Sbjct: 219 VASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL 276
Query: 116 NDDCHTALGVARIKGHINVVRAIESH 141
+ TAL A + GH+ R + S+
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSY 302
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%)
Query: 76 NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
N+N + GR TPLH AA V+LLL GA+ ++ L A GH V
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 136 RAIESH 141
+ H
Sbjct: 108 ELLLKH 113
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 28 GDVDAIRAL-RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
GDV +R L + + +++ GKT L V M G VA L++ GA+ N G
Sbjct: 21 GDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSPAVALELLKQGASPNV--QDASG 76
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
+P+H AA+ G T+++L+ GA+ + + +A +GH +VV
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 125
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 28 GDVDAIRAL-RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
GDV +R L + + +++ GKT L V M G VA L++ GA+ N G
Sbjct: 19 GDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSPAVALELLKQGASPNV--QDASG 74
Query: 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
+P+H AA+ G T+++L+ GA+ + + +A +GH +VV
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 123
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTV 102
L+ + G T L +A + G + + + L+ LGA++NA P G T LH A V
Sbjct: 110 LKATNYNGHTCLHLASI-HGYLGIVELLVSLGADVNAQEP-CNGRTALHLAVDLQNPDLV 167
Query: 103 RLLLSCGANA 112
LLL CGA+
Sbjct: 168 SLLLKCGADV 177
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 35.8 bits (81), Expect = 0.051, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKI 501
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 27 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 69
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
C IC + + VPCGH+ C C + CP+C T I
Sbjct: 28 CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVI 66
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 458 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
+C +C + V VPCGH+ C C ++ CP+CR + +R +
Sbjct: 15 TCKVCLDRAVSIVFVPCGHLV-CAECAPGLQL----CPICRAPVRSRVRTF 60
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 35.4 bits (80), Expect = 0.070, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKI 501
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 30 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 72
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
C IC + + VPCGH+ C C + CP+C T I
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVI 65
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 35.4 bits (80), Expect = 0.075, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
C IC + + VPCGH+ C C + CP+C T I
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVI 65
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTV 102
L+ + G T L +A + G + + + L+ LGA++NA P G T LH A V
Sbjct: 107 LKATNYNGHTCLHLASI-HGYLGIVELLVSLGADVNAQEP-CNGRTALHLAVDLQNPDLV 164
Query: 103 RLLLSCGANA 112
LLL CGA+
Sbjct: 165 SLLLKCGADV 174
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 502
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 335 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 502
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 335 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 502
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 337 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 502
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 337 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 35.0 bits (79), Expect = 0.096, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKI 501
C IC E + PCGH+ C SCL+ + G CP CR +I
Sbjct: 29 CKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEI 71
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 502
C IC E + PCGH+ C SCL+ + G CP CR +I
Sbjct: 341 CKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
GD++ + +L ++ + G+T L V M G +A+ L+ GAN + G
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQV--MKLGNPEIARRLLLRGANPDL--KDRTGN 71
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
+H AA+ G T++ LL A+ + +++ + L +A +GH+ VV + H
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 64 INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
I L LG NINA + G T L A G V+ LL+C A+ V++DD TAL
Sbjct: 163 IETVLQLFRLG-NINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL 220
Query: 124 GVARIKGH 131
A GH
Sbjct: 221 MCACEHGH 228
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 34/121 (28%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN----------------- 78
L+ ++ +D EG TPL +A ++ I +AK LI+ GA+IN
Sbjct: 25 LQDTTYQVDEVDTEGNTPLNIAVHNND-IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83
Query: 79 -----AY----------RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL-VRNDDCHTA 122
AY + GG L AA++G V+LLL G + +ND +TA
Sbjct: 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143
Query: 123 L 123
L
Sbjct: 144 L 144
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
GD++ + +L ++ + G+T L V M G +A+ L+ GAN + G
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQV--MKLGNPEIARRLLLRGANPDL--KDRTGF 71
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
+H AA+ G T++ LL A+ + +++ + L +A +GH+ VV + H
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
GD++ + +L ++ + G+T L V M G +A+ L+ GAN + G
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQV--MKLGNPEIARRLLLRGANPDL--KDRTGF 71
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
+H AA+ G T++ LL A+ + +++ + L +A +GH+ VV + H
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLI-VACMDSGLINVAKTLIE 72
R++ ++ L Q + DVDA+ D+ G+T L+ VA + S + L E
Sbjct: 53 RKADEQALSQLLEDRDVDAV-------------DENGRTALLFVAGLGSD--KCVRLLAE 97
Query: 73 LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
GA+++ +R G T LH AA V L+ GA+ V ++ TAL +AR
Sbjct: 98 AGADLD-HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
GD++ + +L ++ + G+T L V M G +A+ L+ GAN + G
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQV--MKLGNPEIARRLLLRGANPDL--KDRTGF 71
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
+H AA+ G T++ LL A+ + +++ + L +A +GH+ VV + H
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLI-VACMDSGLINVAKTLIE 72
R++ ++ L Q + DVDA+ D+ G+T L+ VA + S + L E
Sbjct: 54 RKADEQALSQLLEDRDVDAV-------------DENGRTALLFVAGLGSD--KCVRLLAE 98
Query: 73 LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
GA+++ +R G T LH AA V L+ GA+ V ++ TAL +AR
Sbjct: 99 AGADLD-HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
LR++ L+ +G TPLI+A L + + LI A++NA G+ + LH AA
Sbjct: 1 LRNRATDLDARMHDGTTPLILAAR-LALEGMLEDLINSHADVNAVDDLGK--SALHWAAA 57
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
+LL GAN ++N+ T L +A +G + + H
Sbjct: 58 VNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 103
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.3 bits (72), Expect = 0.59, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 454 GSSSSCVICWEAPVEGA-------CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503
G+ SC IC + E CGH+ C CL + CP CR KIN
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 56
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
GD++ + +L ++ + G+T L V M G +A+ L+ GAN + G
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQV--MKLGNPEIARRLLLRGANPDL--KDRTGF 71
Query: 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
+H AA+ G T++ LL A+ + +++ + L +A +GH+ VV + H
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCL-SEIKAKKGDCPVCRTKINQVIRLYT 509
S C IC E VE +PC H C C S ++ CP CR +++ R +T
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSSWTRYHT 68
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
LR++ L+ +G TPLI+A L + + LI A++NA G+ + LH AA
Sbjct: 75 LRNRATDLDARMHDGTTPLILAAR-LALEGMLEDLINSHADVNAVDDLGK--SALHWAAA 131
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
+LL GAN ++N+ T L +A +G + + H
Sbjct: 132 VNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 179
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 449 NVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK----KGD--CPVCR 498
NVK++ +C IC E + + CGH + C +CL+ K KG+ CPVCR
Sbjct: 15 NVKEE---VTCPICLELLTQPLSLDCGH-SFCQACLTANHKKSMLDKGESSCPVCR 66
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 39 QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
+G++ + D++GKTP+ +A + G I V LI+ GA++ A
Sbjct: 302 KGSNKDKQDEDGKTPIXLAAQE-GRIEVVXYLIQQGASVEA 341
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
+G+T L A S V + E G+N + G+ TP+ AA+ G V L+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK--TPIXLAAQEGRIEVVXYLIQQ 335
Query: 109 GANALVRNDDCHTALGVARIKGHINVV 135
GA+ + HTA +A+ H N+V
Sbjct: 336 GASVEAVDATDHTARQLAQANNHHNIV 362
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 456 SSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 505
+ C IC E P +PC H A C C++ + CP+C+ + V+
Sbjct: 5 AERCPICLEDPSNYSMALPCLH-AFCYVCITRWIRQNPTCPLCKVPVESVV 54
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 20 LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
LL + G+ D ++ + + + EG T L A +G + K L++ G N+NA
Sbjct: 40 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC-AGHTEIVKFLVQFGVNVNA 98
Query: 80 YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA 110
G TPLH AA + L+ GA
Sbjct: 99 --ADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 20 LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
LL + G+ D ++ + + + EG T L A +G + K L++ G N+NA
Sbjct: 40 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC-AGHTEIVKFLVQFGVNVNA 98
Query: 80 YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA 110
G TPLH AA + L+ GA
Sbjct: 99 --ADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 458 SCVICWEAPVEGA-------CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503
SC IC + E CGH+ C CL + CP CR KIN
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 458 SCVICWEAPVEGA-------CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503
SC IC + E CGH+ C CL + CP CR KIN
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 125
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 458 SCVICWEAPVEGA-------CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503
SC IC + E CGH+ C CL + CP CR KIN
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 63
>pdb|3H2H|A Chain A, Crystal Structure Of G231f Mutant Of The Rice Cell Wall
Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 35 ALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
ALR+Q + E D +G PL+ G + V + LG + AY P
Sbjct: 90 ALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHP 137
>pdb|3H2I|A Chain A, Crystal Structure Of N228w Mutant Of The Rice Cell Wall
Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 35 ALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
ALR+Q + E D +G PL+ G + V + LG + AY P
Sbjct: 90 ALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHP 137
>pdb|3H2G|A Chain A, Crystal Structure Of A Rice Cell Wall Degrading Esterase
Lipa From Xanthomonas Oryzae
pdb|3H2J|A Chain A, Crystal Structure Of The Rice Cell Wall Degrading Esterase
Lipa From Xanthomonas Oryzae
pdb|3H2K|A Chain A, Crystal Structure Of A Ligand-Bound Form Of The Rice Cell
Wall Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 35 ALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
ALR+Q + E D +G PL+ G + V + LG + AY P
Sbjct: 90 ALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHP 137
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 474 CGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503
CGH+ C CL + CP CR KIN
Sbjct: 40 CGHVF-CSQCLRDSLKNANTCPTCRKKINH 68
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 145 FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV 204
F G L E GP + A P+LM + +V++ G K L+ YP + RAV
Sbjct: 332 FIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPG----KVRAV 387
Query: 205 IAL 207
+
Sbjct: 388 VKF 390
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSC-LSEIKAKKGDCPV 496
GS C IC A E PCGH C +C + I+ CPV
Sbjct: 4 GSKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 46
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG---DCPVCRTKINQ 503
C IC + + + CGH C+ C+++I CP+C+T + +
Sbjct: 23 CPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
L V + + + +I+ G +++A G T LH+AA ++LLL A
Sbjct: 177 LAVKVANQASLPLVDFIIQNGGHLDA--KAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 114 VRNDDCHTALGVARIKGH 131
N+ TAL +AR K H
Sbjct: 235 TVNEAGETALDIARKKHH 252
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
+R++ L+ +G TPLI+A + + + LI A++NA G+ + LH AA
Sbjct: 111 IRNRATDLDARMHDGTTPLILAAR-LAVEGMLEDLINSHADVNAVDDLGK--SALHWAAA 167
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
+LL GAN ++N+ T L +A +G + + H
Sbjct: 168 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 215
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
+R++ L+ +G TPLI+A + + + LI A++NA G+ + LH AA
Sbjct: 110 IRNRATDLDARMHDGTTPLILAAR-LAVEGMLEDLINSHADVNAVDDLGK--SALHWAAA 166
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
+LL GAN ++N+ T L +A +G + + H
Sbjct: 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 458 SCVICWEAPVEGACVPCGHMAGCMSCLS------EIKAKKGDCPVCR 498
+C IC E E C H + C +C++ KG+CPVCR
Sbjct: 21 TCPICLELLKEPVSADCNH-SFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|1GPC|A Chain A, Core Gp32, Dna-Binding Protein
Length = 218
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 237 FASANEGDKHQLQW---LDNACRGTSQFQFLPSANNHQSAEAINAN 279
F+S ++G +W LDNA G + +FLPS N+ Q+ AI N
Sbjct: 2 FSSEDKG-----EWKLKLDNAGNGQAVIRFLPSKNDEQAPFAILVN 42
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
+R++ L+ +G TPLI+A + + + LI A++NA G+ + LH AA
Sbjct: 110 IRNRATDLDARMHDGTTPLILAAR-LAVEGMLEDLINSHADVNAVDDLGK--SALHWAAA 166
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
+LL GAN ++N+ T L +A +G + + H
Sbjct: 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG--DCPVCRTKINQ 503
C IC E E C H+ L + KKG CP+C+ I +
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>pdb|4F13|A Chain A, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide
pdb|4F13|B Chain B, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide
Length = 353
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
SKD+ L++W + V A+ + G+ + M + ++ L +A+T G
Sbjct: 204 SKDDELFRWGLGRYVQAMGLINEDGSFVHEMTRHEQSLHFQNYAMLPLTMIAETASRQGI 263
Query: 76 NINAYRPGGRGGTPLHHAAK 95
++ AY+ GR +H A K
Sbjct: 264 DLYAYKENGRD---IHSARK 280
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
+R++ L+ +G TPLI+A + + + LI A++NA G+ + LH AA
Sbjct: 78 IRNRATDLDARMHDGTTPLILAAR-LAVEGMLEDLINSHADVNAVDDLGK--SALHWAAA 134
Query: 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
+LL GAN ++N+ T L +A +G + + H
Sbjct: 135 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182
>pdb|3KLL|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180-Maltose Complex
Length = 1039
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 60/163 (36%)
Query: 112 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA---PQLMSR 168
+ R+DD T V+ IK + + I G ++ YG FL+ L PQL S+
Sbjct: 781 TVTRSDDHGTTWEVSPIKNVVYITNTIGG------GEYQKKYGGEFLDTLQKEYPQLFSQ 834
Query: 169 KIWVVVIPCGTANPSKPLRFELVIYPSLQD-VQPRAVIALWKAKIDEPKFHQPDPSLTIY 227
+YP Q + P I W AK Y
Sbjct: 835 -----------------------VYPVTQTTIDPSVKIKEWSAK---------------Y 856
Query: 228 DQATKIRYKFAS----ANEGDKHQLQWLDNACRGTSQFQFLPS 266
T I ++ A +N+G + L GTS QFLPS
Sbjct: 857 FNGTNILHRGAGYVLRSNDGKYYNL--------GTSTQQFLPS 891
>pdb|3KLK|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180 In Triclinic Apo- Form
Length = 1039
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 58/165 (35%), Gaps = 60/165 (36%)
Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA---PQLM 166
A + R+DD T V+ IK + + I G ++ YG FL+ L PQL
Sbjct: 779 AVTVTRSDDHGTTWEVSPIKNVVYITNTIGG------GEYQKKYGGEFLDTLQKEYPQLF 832
Query: 167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQD-VQPRAVIALWKAKIDEPKFHQPDPSLT 225
S+ +YP Q + P I W AK
Sbjct: 833 SQ-----------------------VYPVTQTTIDPSVKIKEWSAK-------------- 855
Query: 226 IYDQATKIRYKFAS----ANEGDKHQLQWLDNACRGTSQFQFLPS 266
Y T I ++ A +N+G + L GTS QFLPS
Sbjct: 856 -YFNGTNILHRGAGYVLRSNDGKYYNL--------GTSTQQFLPS 891
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,682,379
Number of Sequences: 62578
Number of extensions: 657274
Number of successful extensions: 1739
Number of sequences better than 100.0: 157
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1274
Number of HSP's gapped (non-prelim): 322
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)