Query 010439
Match_columns 510
No_of_seqs 440 out of 4377
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 06:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 3.5E-36 1.2E-40 269.4 20.4 159 19-183 6-164 (169)
2 3b7b_A Euchromatic histone-lys 100.0 6.3E-36 2.1E-40 282.7 20.6 220 8-243 2-222 (237)
3 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-36 5.3E-41 290.3 15.3 219 8-242 1-234 (253)
4 1oy3_D Transcription factor in 100.0 4.2E-36 1.4E-40 291.1 18.5 214 11-240 3-267 (282)
5 2xai_A ASB-9, ankyrin repeat a 100.0 1.7E-35 6E-40 284.4 21.4 217 16-251 2-218 (261)
6 3d9h_A CDNA FLJ77766, highly s 100.0 2.2E-35 7.6E-40 287.5 22.4 224 10-252 52-275 (285)
7 2xai_A ASB-9, ankyrin repeat a 100.0 3E-35 1E-39 282.8 20.8 224 7-242 26-249 (261)
8 1k1a_A B-cell lymphoma 3-encod 100.0 7.5E-35 2.6E-39 275.7 20.2 214 11-240 3-225 (241)
9 3ljn_A Hypothetical protein; a 100.0 5.3E-35 1.8E-39 294.8 16.9 220 4-241 7-254 (364)
10 4b93_B Ankyrin repeat domain-c 100.0 8.5E-35 2.9E-39 280.8 15.4 216 11-241 5-228 (269)
11 2dzn_A Probable 26S proteasome 100.0 7.6E-34 2.6E-38 266.6 20.5 211 17-240 2-217 (228)
12 1yyh_A HN1;, notch 1, ankyrin 100.0 5.8E-34 2E-38 272.4 19.8 190 13-208 53-243 (253)
13 2f8y_A Notch homolog 1, transl 100.0 2E-33 6.8E-38 262.9 22.5 200 7-212 14-215 (223)
14 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-33 5.1E-38 273.0 21.5 220 8-242 29-264 (285)
15 3utm_A Tankyrase-1; tankyrase, 100.0 8.8E-34 3E-38 283.3 20.4 217 7-239 48-321 (351)
16 3aji_A 26S proteasome non-ATPa 100.0 1.7E-33 5.9E-38 264.8 21.2 190 10-205 33-222 (231)
17 1ikn_D Protein (I-kappa-B-alph 100.0 4E-35 1.4E-39 277.3 9.8 215 11-239 2-227 (236)
18 3aji_A 26S proteasome non-ATPa 100.0 1.3E-33 4.5E-38 265.6 19.3 211 14-240 3-214 (231)
19 3b7b_A Euchromatic histone-lys 100.0 3.7E-33 1.3E-37 263.6 21.8 198 7-210 34-232 (237)
20 1oy3_D Transcription factor in 100.0 1.2E-33 4E-38 273.8 18.7 185 10-200 38-270 (282)
21 1k1a_A B-cell lymphoma 3-encod 100.0 2.8E-33 9.6E-38 264.8 20.2 194 6-205 35-233 (241)
22 4b93_B Ankyrin repeat domain-c 100.0 1E-33 3.5E-38 273.2 16.6 185 10-200 45-230 (269)
23 2rfa_A Transient receptor pote 100.0 5.6E-33 1.9E-37 261.6 19.7 190 16-211 2-220 (232)
24 1n11_A Ankyrin; clathrin, BAND 100.0 3.8E-33 1.3E-37 288.2 20.0 219 7-241 4-222 (437)
25 3d9h_A CDNA FLJ77766, highly s 100.0 1.6E-32 5.5E-37 267.3 22.8 184 7-198 82-265 (285)
26 2fo1_E LIN-12 protein; beta-ba 100.0 8.4E-34 2.9E-38 287.2 13.4 221 8-242 115-357 (373)
27 2dzn_A Probable 26S proteasome 100.0 2.3E-32 7.8E-37 256.5 21.6 183 12-200 31-220 (228)
28 4g8k_A 2-5A-dependent ribonucl 100.0 1E-32 3.5E-37 275.1 20.3 217 13-242 21-284 (337)
29 1n11_A Ankyrin; clathrin, BAND 100.0 1.1E-32 3.7E-37 284.9 20.6 220 7-242 169-388 (437)
30 1wdy_A 2-5A-dependent ribonucl 100.0 1.9E-32 6.6E-37 265.2 20.8 212 15-242 3-230 (285)
31 1s70_B 130 kDa myosin-binding 100.0 7.7E-32 2.6E-36 263.8 23.2 188 13-207 36-283 (299)
32 3ljn_A Hypothetical protein; a 100.0 1E-32 3.5E-37 278.1 17.4 230 7-246 43-304 (364)
33 2rfm_A Putative ankyrin repeat 100.0 1.3E-32 4.4E-37 251.6 16.0 163 10-178 28-190 (192)
34 2y1l_E Darpin-8.4; hydrolase-i 100.0 9.8E-32 3.4E-36 240.6 20.3 160 13-178 10-169 (169)
35 3hra_A Ankyrin repeat family p 100.0 8E-32 2.8E-36 247.7 20.3 189 14-208 2-198 (201)
36 3eu9_A Huntingtin-interacting 100.0 4.7E-32 1.6E-36 255.8 18.6 216 11-241 3-220 (240)
37 3utm_A Tankyrase-1; tankyrase, 100.0 2.7E-32 9.2E-37 272.5 17.3 219 7-241 14-290 (351)
38 1ikn_D Protein (I-kappa-B-alph 100.0 2.7E-32 9.2E-37 257.8 16.3 182 8-195 36-226 (236)
39 2fo1_E LIN-12 protein; beta-ba 100.0 2.7E-32 9.1E-37 276.1 17.1 198 6-209 155-367 (373)
40 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.8E-32 2.3E-36 239.5 17.0 159 15-180 3-162 (162)
41 3kea_A K1L; tropism, ANK repea 100.0 6.6E-33 2.2E-37 270.0 11.4 191 9-208 23-215 (285)
42 3v30_A DNA-binding protein rfx 100.0 3.7E-32 1.3E-36 243.8 15.3 168 17-190 2-170 (172)
43 3v31_A Ankyrin repeat family A 100.0 7E-32 2.4E-36 240.8 15.7 160 16-181 2-161 (167)
44 2rfa_A Transient receptor pote 100.0 1E-31 3.5E-36 252.9 16.8 176 7-184 27-226 (232)
45 3hra_A Ankyrin repeat family p 100.0 3.4E-31 1.2E-35 243.5 19.0 165 8-178 30-201 (201)
46 2etb_A Transient receptor pote 100.0 4.2E-32 1.4E-36 259.8 13.0 191 16-209 1-242 (256)
47 3f6q_A Integrin-linked protein 100.0 2.8E-31 9.4E-36 239.9 17.5 167 15-187 3-170 (179)
48 2f8y_A Notch homolog 1, transl 100.0 8.4E-31 2.9E-35 245.0 21.4 169 7-181 48-217 (223)
49 4gpm_A Engineered protein OR26 100.0 3.4E-31 1.2E-35 236.9 16.7 138 6-146 26-163 (169)
50 3twr_A Tankyrase-2; ankyrin re 100.0 4.7E-31 1.6E-35 235.0 17.1 160 13-179 4-164 (165)
51 1awc_B Protein (GA binding pro 100.0 1.3E-30 4.5E-35 229.2 19.0 152 16-174 1-152 (153)
52 2pnn_A Transient receptor pote 100.0 1.2E-31 4E-36 259.3 13.4 203 8-213 4-258 (273)
53 4g8k_A 2-5A-dependent ribonucl 100.0 1.2E-30 4.1E-35 260.1 21.1 226 7-251 48-322 (337)
54 2etb_A Transient receptor pote 100.0 1.6E-31 5.5E-36 255.7 13.8 169 7-181 29-247 (256)
55 3eu9_A Huntingtin-interacting 100.0 1.5E-30 5E-35 245.5 19.6 199 7-211 32-233 (240)
56 2pnn_A Transient receptor pote 100.0 4.2E-31 1.4E-35 255.4 14.0 170 12-185 49-264 (273)
57 4hbd_A KN motif and ankyrin re 100.0 1.1E-30 3.8E-35 253.1 16.5 163 10-178 104-273 (276)
58 3kea_A K1L; tropism, ANK repea 100.0 9.1E-31 3.1E-35 254.9 15.2 189 8-212 55-245 (285)
59 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5.3E-30 1.8E-34 225.8 18.1 154 16-177 1-155 (156)
60 1sw6_A Regulatory protein SWI6 100.0 7.8E-31 2.7E-35 260.5 13.6 178 7-198 120-326 (327)
61 3jxi_A Vanilloid receptor-rela 100.0 8E-31 2.7E-35 251.4 11.5 193 14-210 2-247 (260)
62 3jxi_A Vanilloid receptor-rela 100.0 1.8E-30 6.2E-35 248.9 13.7 163 15-181 44-251 (260)
63 2vge_A RELA-associated inhibit 100.0 3.6E-30 1.2E-34 242.3 13.9 192 33-241 1-198 (229)
64 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.4E-30 4.8E-35 246.8 11.1 172 14-192 2-176 (239)
65 2vge_A RELA-associated inhibit 100.0 1.1E-31 3.6E-36 252.8 1.8 186 11-205 15-205 (229)
66 1s70_B 130 kDa myosin-binding 100.0 1E-28 3.5E-33 241.5 17.7 165 7-175 63-285 (299)
67 4hbd_A KN motif and ankyrin re 100.0 1.3E-29 4.4E-34 245.6 10.1 189 15-209 74-271 (276)
68 1bi7_B P16INK4A, MTS1, multipl 100.0 4.2E-29 1.4E-33 220.4 10.4 143 11-159 6-149 (156)
69 1d9s_A Cyclin-dependent kinase 100.0 7.3E-29 2.5E-33 213.5 11.5 133 8-144 3-136 (136)
70 1sw6_A Regulatory protein SWI6 100.0 3.1E-29 1.1E-33 249.0 8.8 199 19-241 99-326 (327)
71 3v30_A DNA-binding protein rfx 100.0 4.7E-28 1.6E-32 217.0 15.0 143 10-157 29-171 (172)
72 2rfm_A Putative ankyrin repeat 100.0 5.5E-28 1.9E-32 220.7 15.0 160 43-208 28-187 (192)
73 1d9s_A Cyclin-dependent kinase 100.0 3.8E-28 1.3E-32 209.0 11.8 134 40-180 2-136 (136)
74 3t8k_A Uncharacterized protein 100.0 5.3E-29 1.8E-33 226.3 6.3 161 16-184 5-183 (186)
75 2jab_A H10-2-G3; HER2, darpin, 99.9 4.3E-27 1.5E-31 202.4 16.0 127 13-142 10-136 (136)
76 1ihb_A P18-INK4C(INK6), cyclin 99.9 4.3E-27 1.5E-31 208.4 14.0 135 6-144 27-162 (162)
77 3v31_A Ankyrin repeat family A 99.9 9.9E-27 3.4E-31 207.3 16.1 155 49-209 2-156 (167)
78 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-26 4E-31 196.0 15.7 126 16-144 1-126 (126)
79 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.6E-26 5.5E-31 206.6 16.4 155 47-207 11-165 (169)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 6.3E-27 2.1E-31 206.4 11.1 144 43-193 5-149 (156)
81 1awc_B Protein (GA binding pro 99.9 3.3E-26 1.1E-30 200.9 15.3 149 50-205 2-150 (153)
82 3f6q_A Integrin-linked protein 99.9 1.8E-25 6.1E-30 201.7 18.1 158 48-211 3-161 (179)
83 3twr_A Tankyrase-2; ankyrin re 99.9 1.2E-25 4E-30 199.9 16.5 153 46-205 4-157 (165)
84 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.5E-26 5E-31 219.1 10.3 148 14-167 34-193 (239)
85 3c5r_A BARD-1, BRCA1-associate 99.9 7E-27 2.4E-31 201.3 7.2 123 14-139 7-129 (137)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.5E-25 8.7E-30 187.8 15.8 126 49-180 1-126 (126)
87 3c5r_A BARD-1, BRCA1-associate 99.9 3.9E-26 1.3E-30 196.5 10.4 133 40-179 1-133 (137)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 1.7E-25 5.8E-30 192.4 14.4 126 47-178 11-136 (136)
89 3deo_A Signal recognition part 99.9 1.4E-25 4.7E-30 203.3 13.6 143 12-177 39-181 (183)
90 3ui2_A Signal recognition part 99.9 7.9E-26 2.7E-30 214.8 11.8 146 12-180 40-185 (244)
91 3t8k_A Uncharacterized protein 99.9 1.7E-26 5.9E-31 209.7 6.8 134 10-146 30-181 (186)
92 3ehr_A Osteoclast-stimulating 99.9 4.9E-26 1.7E-30 212.8 9.0 138 11-153 67-205 (222)
93 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5E-25 1.7E-29 193.8 14.5 151 50-208 2-153 (156)
94 3aaa_C Myotrophin, protein V-1 99.9 2.4E-25 8.1E-30 187.9 11.1 113 14-129 4-116 (123)
95 2b0o_E UPLC1; arfgap, structur 99.9 5.7E-25 1.9E-29 215.3 14.2 142 16-168 150-299 (301)
96 2aja_A Ankyrin repeat family p 99.9 1.8E-26 6.1E-31 232.2 -3.3 159 12-184 87-254 (376)
97 3jue_A Arfgap with coiled-coil 99.9 7.7E-24 2.6E-28 212.2 15.0 148 13-164 195-346 (368)
98 3aaa_C Myotrophin, protein V-1 99.9 5.4E-24 1.8E-28 179.5 11.3 113 47-165 4-116 (123)
99 3ehr_A Osteoclast-stimulating 99.9 1.5E-24 5.1E-29 202.7 8.6 134 46-185 69-203 (222)
100 3lvq_E ARF-GAP with SH3 domain 99.9 1.9E-23 6.7E-28 219.0 15.8 127 17-146 132-267 (497)
101 1dcq_A PYK2-associated protein 99.9 1.4E-22 4.7E-27 196.1 16.3 125 18-144 131-263 (278)
102 3deo_A Signal recognition part 99.9 3.1E-25 1E-29 201.0 -3.2 115 47-168 41-156 (183)
103 2b0o_E UPLC1; arfgap, structur 99.9 2.7E-22 9.2E-27 196.3 15.0 139 50-200 151-298 (301)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2.7E-22 9.4E-27 160.2 11.8 91 17-110 2-92 (93)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.8E-22 1.7E-26 158.7 12.4 93 49-144 1-93 (93)
106 1dcq_A PYK2-associated protein 99.9 1.1E-21 3.6E-26 189.9 17.2 166 12-181 61-264 (278)
107 2aja_A Ankyrin repeat family p 99.9 1.8E-23 6.1E-28 210.3 3.4 174 16-208 64-245 (376)
108 2l6b_A NR1C; ankyrin, consensu 99.9 1.7E-22 5.8E-27 168.1 6.7 106 14-122 6-111 (115)
109 3lvq_E ARF-GAP with SH3 domain 99.9 1.7E-21 5.9E-26 204.1 14.8 137 50-190 132-275 (497)
110 2l6b_A NR1C; ankyrin, consensu 99.9 6E-22 2.1E-26 164.7 8.3 109 45-158 4-112 (115)
111 3ui2_A Signal recognition part 99.9 4.8E-22 1.6E-26 188.6 8.1 167 16-209 14-181 (244)
112 3jue_A Arfgap with coiled-coil 99.8 3E-21 1E-25 193.4 12.8 132 46-180 195-326 (368)
113 2zgd_A 3 repeat synthetic anky 99.8 4.2E-19 1.4E-23 146.3 11.5 92 11-105 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 9.2E-19 3.1E-23 144.3 10.7 92 44-138 18-109 (110)
115 2vje_B MDM4 protein; proto-onc 99.5 8.9E-15 3E-19 106.6 3.7 56 455-510 6-63 (63)
116 2vje_A E3 ubiquitin-protein li 99.5 1E-14 3.5E-19 106.6 3.6 56 455-510 7-64 (64)
117 2ea5_A Cell growth regulator w 99.4 1E-13 3.6E-18 102.3 3.2 53 453-509 12-64 (68)
118 2yho_A E3 ubiquitin-protein li 99.3 1.5E-12 5.1E-17 99.3 2.4 51 455-509 17-67 (79)
119 4ic3_A E3 ubiquitin-protein li 99.2 4.3E-12 1.5E-16 95.7 2.3 52 455-510 23-74 (74)
120 2d8t_A Dactylidin, ring finger 99.2 2.5E-11 8.4E-16 90.8 4.7 49 454-503 13-61 (71)
121 2ecg_A Baculoviral IAP repeat- 99.2 5.7E-12 1.9E-16 95.3 1.2 52 455-510 24-75 (75)
122 2ecn_A Ring finger protein 141 99.1 2.9E-11 9.9E-16 90.2 3.8 53 454-508 13-65 (70)
123 2csy_A Zinc finger protein 183 99.1 5.9E-11 2E-15 91.3 5.5 50 453-503 12-61 (81)
124 2djb_A Polycomb group ring fin 99.1 6.8E-11 2.3E-15 88.7 4.8 52 452-504 11-63 (72)
125 3ng2_A RNF4, snurf, ring finge 99.1 3.2E-11 1.1E-15 90.3 2.5 53 455-508 9-70 (71)
126 2xeu_A Ring finger protein 4; 99.1 4.7E-11 1.6E-15 87.3 3.1 53 455-508 2-63 (64)
127 2ea6_A Ring finger protein 4; 99.1 6.9E-11 2.4E-15 87.9 3.7 49 454-503 13-68 (69)
128 2ysl_A Tripartite motif-contai 99.0 2.1E-10 7.3E-15 86.2 6.0 49 454-503 18-69 (73)
129 2kiz_A E3 ubiquitin-protein li 99.0 2.2E-10 7.5E-15 85.1 5.0 52 453-505 11-65 (69)
130 1chc_A Equine herpes virus-1 r 99.0 8.9E-11 3E-15 87.0 2.7 52 456-508 5-57 (68)
131 4ayc_A E3 ubiquitin-protein li 99.0 1.4E-10 4.8E-15 98.9 4.2 49 456-505 53-101 (138)
132 2l0b_A E3 ubiquitin-protein li 99.0 2.7E-10 9.3E-15 89.5 4.5 49 454-503 38-89 (91)
133 2ecy_A TNF receptor-associated 99.0 2.7E-10 9.1E-15 83.8 4.1 49 454-503 13-62 (66)
134 2yur_A Retinoblastoma-binding 99.0 2.5E-10 8.7E-15 86.0 4.0 49 453-502 12-63 (74)
135 2ep4_A Ring finger protein 24; 99.0 2E-10 6.7E-15 86.7 3.1 54 453-507 12-68 (74)
136 2ecm_A Ring finger and CHY zin 99.0 2.2E-10 7.5E-15 80.9 2.9 46 456-502 5-54 (55)
137 2ect_A Ring finger protein 126 99.0 2.8E-10 9.5E-15 86.8 3.7 49 454-503 13-64 (78)
138 3ztg_A E3 ubiquitin-protein li 98.9 4.8E-10 1.6E-14 88.5 4.5 50 452-502 9-61 (92)
139 1iym_A EL5; ring-H2 finger, ub 98.9 2.9E-10 1E-14 80.2 2.8 47 455-502 4-54 (55)
140 2ct2_A Tripartite motif protei 98.9 6.5E-10 2.2E-14 86.9 5.1 49 453-502 12-67 (88)
141 2ecw_A Tripartite motif-contai 98.9 7E-10 2.4E-14 86.1 5.0 49 454-503 17-71 (85)
142 1x4j_A Ring finger protein 38; 98.9 3.4E-10 1.2E-14 85.6 2.9 48 455-503 22-72 (75)
143 1e4u_A Transcriptional repress 98.9 4.1E-10 1.4E-14 85.2 3.1 55 453-508 8-67 (78)
144 2egp_A Tripartite motif-contai 98.9 2.5E-10 8.5E-15 87.3 1.8 50 453-503 9-65 (79)
145 1t1h_A Gspef-atpub14, armadill 98.9 9.6E-10 3.3E-14 83.8 4.6 48 455-503 7-55 (78)
146 2ysj_A Tripartite motif-contai 98.9 1.8E-09 6.1E-14 78.5 5.6 43 454-497 18-63 (63)
147 2ecv_A Tripartite motif-contai 98.9 8.3E-10 2.8E-14 85.6 3.3 49 454-503 17-71 (85)
148 3lrq_A E3 ubiquitin-protein li 98.9 7.3E-10 2.5E-14 88.7 2.9 47 455-502 21-69 (100)
149 1g25_A CDK-activating kinase a 98.8 1.2E-09 4.2E-14 79.9 3.0 47 456-503 3-55 (65)
150 2ecj_A Tripartite motif-contai 98.8 2.1E-09 7.1E-14 76.7 4.1 43 454-497 13-58 (58)
151 3fl2_A E3 ubiquitin-protein li 98.8 1.5E-09 5.2E-14 90.7 3.3 48 455-503 51-99 (124)
152 2y43_A E3 ubiquitin-protein li 98.8 1.8E-09 6.1E-14 86.4 3.5 48 455-503 21-69 (99)
153 2ckl_A Polycomb group ring fin 98.8 2.6E-09 9.1E-14 86.8 4.2 49 454-503 13-62 (108)
154 1bor_A Transcription factor PM 98.8 4.8E-10 1.6E-14 79.3 -1.1 45 454-502 4-48 (56)
155 2y1n_A E3 ubiquitin-protein li 98.8 3.9E-09 1.3E-13 103.6 4.8 50 457-507 333-383 (389)
156 2kr4_A Ubiquitin conjugation f 98.8 6.5E-09 2.2E-13 80.3 4.9 49 454-503 12-60 (85)
157 3l11_A E3 ubiquitin-protein li 98.7 1.7E-09 5.9E-14 89.0 1.5 49 454-503 13-62 (115)
158 3t6p_A Baculoviral IAP repeat- 98.7 1.6E-09 5.6E-14 105.8 1.4 51 455-509 294-344 (345)
159 1z6u_A NP95-like ring finger p 98.7 3.7E-09 1.3E-13 91.1 3.3 49 455-504 77-126 (150)
160 3hct_A TNF receptor-associated 98.7 6.4E-09 2.2E-13 86.0 4.3 50 453-503 15-65 (118)
161 1wgm_A Ubiquitin conjugation f 98.7 1.5E-08 5.2E-13 80.3 6.2 49 454-503 20-69 (98)
162 2kre_A Ubiquitin conjugation f 98.7 9.4E-09 3.2E-13 81.8 4.8 49 454-503 27-75 (100)
163 2ecl_A Ring-box protein 2; RNF 98.7 8.1E-09 2.8E-13 79.0 4.0 46 456-502 15-75 (81)
164 1v87_A Deltex protein 2; ring- 98.7 6.3E-09 2.1E-13 85.5 3.6 46 457-503 26-94 (114)
165 2ckl_B Ubiquitin ligase protei 98.7 5.6E-09 1.9E-13 91.9 3.1 48 454-502 52-101 (165)
166 1jm7_A BRCA1, breast cancer ty 98.7 4.2E-09 1.4E-13 86.3 1.4 47 456-503 21-70 (112)
167 3knv_A TNF receptor-associated 98.7 1E-08 3.5E-13 87.3 3.6 47 454-501 29-76 (141)
168 1rmd_A RAG1; V(D)J recombinati 98.6 1.2E-08 4E-13 84.1 3.1 48 455-503 22-70 (116)
169 4ap4_A E3 ubiquitin ligase RNF 98.6 1.5E-08 5E-13 85.7 3.7 48 455-503 6-60 (133)
170 4ap4_A E3 ubiquitin ligase RNF 98.6 2.1E-08 7.3E-13 84.7 3.3 53 455-508 71-132 (133)
171 3dpl_R Ring-box protein 1; ubi 98.5 6.4E-08 2.2E-12 77.7 4.2 46 456-502 37-100 (106)
172 1jm7_B BARD1, BRCA1-associated 98.5 1.7E-08 5.7E-13 83.3 -0.1 45 455-502 21-66 (117)
173 3hcs_A TNF receptor-associated 98.4 1.4E-07 4.7E-12 83.3 3.5 50 453-503 15-65 (170)
174 2c2l_A CHIP, carboxy terminus 98.4 1.6E-07 5.3E-12 90.2 4.1 48 455-503 207-255 (281)
175 2yu4_A E3 SUMO-protein ligase 98.4 1.6E-07 5.4E-12 74.0 3.3 45 455-500 6-59 (94)
176 2f42_A STIP1 homology and U-bo 98.3 2.8E-07 9.4E-12 80.9 4.2 48 455-503 105-153 (179)
177 4a0k_B E3 ubiquitin-protein li 98.3 1.1E-07 3.8E-12 77.4 0.4 45 457-502 49-111 (117)
178 2d8s_A Cellular modulator of i 98.2 7.9E-07 2.7E-11 67.3 2.7 48 455-503 14-70 (80)
179 3htk_C E3 SUMO-protein ligase 98.0 2.8E-06 9.5E-11 78.2 4.3 47 455-502 180-231 (267)
180 2bay_A PRE-mRNA splicing facto 98.0 2.5E-06 8.5E-11 60.9 2.5 50 457-507 4-56 (61)
181 1wim_A KIAA0161 protein; ring 97.8 4.6E-06 1.6E-10 65.5 1.9 44 456-500 5-61 (94)
182 3vk6_A E3 ubiquitin-protein li 97.7 3.4E-05 1.2E-09 59.2 4.3 49 458-507 3-53 (101)
183 2ct0_A Non-SMC element 1 homol 97.7 5.7E-05 1.9E-09 55.8 5.3 48 455-503 14-64 (74)
184 1vyx_A ORF K3, K3RING; zinc-bi 97.4 6.6E-05 2.3E-09 53.2 2.7 49 454-502 4-58 (60)
185 3k1l_B Fancl; UBC, ring, RWD, 97.2 8.3E-05 2.8E-09 70.7 1.4 49 454-503 306-373 (381)
186 2ko5_A Ring finger protein Z; 96.0 0.0027 9.2E-08 47.7 2.1 48 457-507 29-77 (99)
187 2cs3_A Protein C14ORF4, MY039 93.2 0.056 1.9E-06 39.2 2.9 33 456-489 15-51 (93)
188 3nw0_A Non-structural maintena 93.1 0.07 2.4E-06 49.0 4.2 46 456-502 180-228 (238)
189 2jun_A Midline-1; B-BOX, TRIM, 90.2 0.1 3.6E-06 40.8 1.6 31 456-487 3-36 (101)
190 3ql9_A Transcriptional regulat 75.2 2.2 7.6E-05 34.6 3.4 51 450-501 51-112 (129)
191 2fiy_A Protein FDHE homolog; F 70.0 0.75 2.6E-05 43.7 -0.6 44 457-500 183-231 (309)
192 2lbm_A Transcriptional regulat 64.6 5.3 0.00018 33.0 3.5 49 451-500 58-117 (142)
193 2lri_C Autoimmune regulator; Z 63.2 3.7 0.00013 29.0 2.1 43 457-500 13-59 (66)
194 1weo_A Cellulose synthase, cat 57.6 13 0.00046 27.6 4.2 45 457-502 17-69 (93)
195 1wil_A KIAA1045 protein; ring 54.8 12 0.00041 27.5 3.5 31 455-487 14-47 (89)
196 2d8v_A Zinc finger FYVE domain 54.3 6 0.0002 27.6 1.8 35 453-488 5-39 (67)
197 2l5u_A Chromodomain-helicase-D 49.1 7.9 0.00027 26.8 1.8 45 454-499 9-57 (61)
198 1z60_A TFIIH basal transcripti 47.6 8.5 0.00029 26.4 1.7 40 457-497 16-58 (59)
199 1zbd_B Rabphilin-3A; G protein 46.0 1.3 4.5E-05 36.4 -3.1 45 455-500 54-107 (134)
200 3m62_A Ubiquitin conjugation f 45.9 17 0.00058 39.8 4.6 51 453-503 888-938 (968)
201 1mm2_A MI2-beta; PHD, zinc fin 45.5 3.5 0.00012 28.6 -0.5 47 454-501 7-57 (61)
202 3i2d_A E3 SUMO-protein ligase 44.7 9 0.00031 37.0 2.0 45 457-502 250-299 (371)
203 3a1b_A DNA (cytosine-5)-methyl 44.2 15 0.00053 30.7 3.1 52 449-501 72-135 (159)
204 2pv0_B DNA (cytosine-5)-methyl 43.1 19 0.00064 35.1 3.9 52 449-501 86-149 (386)
205 2yql_A PHD finger protein 21A; 42.7 3.4 0.00012 28.1 -1.0 45 454-499 7-55 (56)
206 2zet_C Melanophilin; complex, 41.3 3.3 0.00011 34.8 -1.4 45 455-500 67-117 (153)
207 4fo9_A E3 SUMO-protein ligase 39.8 12 0.0004 36.1 2.0 45 457-502 216-265 (360)
208 3u5n_A E3 ubiquitin-protein li 37.0 5.5 0.00019 35.4 -0.8 46 454-500 5-54 (207)
209 2l43_A N-teminal domain from h 33.9 18 0.00063 27.0 1.8 48 454-502 23-77 (88)
210 2csz_A Synaptotagmin-like prot 33.8 4.9 0.00017 29.1 -1.3 46 454-500 23-73 (76)
211 1wev_A Riken cDNA 1110020M19; 32.1 4.7 0.00016 30.3 -1.7 47 455-502 15-74 (88)
212 1xwh_A Autoimmune regulator; P 31.1 9.1 0.00031 26.9 -0.3 47 455-502 7-57 (66)
213 2e6r_A Jumonji/ARID domain-con 30.5 8.7 0.0003 29.1 -0.5 47 453-500 13-66 (92)
214 3zrh_A Ubiquitin thioesterase 30.4 1E+02 0.0035 30.1 6.7 49 23-72 28-90 (454)
215 3pwf_A Rubrerythrin; non heme 28.4 27 0.00092 29.7 2.2 29 471-507 141-169 (170)
216 1fp0_A KAP-1 corepressor; PHD 28.3 14 0.00049 27.6 0.4 47 453-500 22-72 (88)
217 3mkq_B Coatomer subunit alpha; 26.0 3E+02 0.01 23.3 9.4 133 15-176 6-139 (177)
218 4g26_A Pentatricopeptide repea 25.0 1.1E+02 0.0037 30.9 6.4 141 21-175 33-198 (501)
219 2puy_A PHD finger protein 21A; 24.2 11 0.00037 25.8 -0.9 46 455-501 4-53 (60)
220 1gp8_A Protein (scaffolding pr 23.7 48 0.0016 20.3 2.0 19 20-38 16-34 (40)
221 1y02_A CARP2, FYVE-ring finger 22.8 9.3 0.00032 30.6 -1.7 43 457-500 20-66 (120)
222 4rxn_A Rubredoxin; electron tr 22.1 35 0.0012 22.9 1.3 16 492-507 37-52 (54)
223 3c5k_A HD6, histone deacetylas 21.7 31 0.0011 27.0 1.2 23 457-480 25-47 (109)
224 1m3v_A FLIN4, fusion of the LI 21.5 50 0.0017 26.1 2.5 46 457-503 33-81 (122)
225 2ku3_A Bromodomain-containing 21.2 27 0.00093 24.9 0.7 45 455-500 15-66 (71)
226 2yt5_A Metal-response element- 21.1 17 0.00059 25.3 -0.4 46 455-501 5-62 (66)
227 1yk4_A Rubredoxin, RD; electro 20.6 46 0.0016 22.0 1.7 15 493-507 37-51 (52)
228 2kdx_A HYPA, hydrogenase/ureas 20.6 27 0.00092 27.7 0.6 32 466-504 71-103 (119)
229 1joc_A EEA1, early endosomal a 20.5 28 0.00096 27.9 0.7 29 457-486 70-102 (125)
230 2gmg_A Hypothetical protein PF 20.5 17 0.00058 28.1 -0.6 26 471-502 70-95 (105)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.5e-36 Score=269.35 Aligned_cols=159 Identities=31% Similarity=0.392 Sum_probs=150.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCC
Q 010439 19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL 98 (510)
Q Consensus 19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~ 98 (510)
+.|+.||+.|+.++|+.||++|+|+|.+|.+|+||||+|+.. ++.+++++|+++|++++.+ |..|+||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~-~~~~~~~~ll~~gad~~~~--d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhhh--ccCCCCHHHHHHHcCC
Confidence 579999999999999999999999999999999999999997 9999999999999999998 8999999999999999
Q ss_pred HHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCC
Q 010439 99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG 178 (510)
Q Consensus 99 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~g 178 (510)
.++|++|+++|+|++.+|..|+||||+|+..|+.++|++|+++|++++ .+|.+|+|||| +|+..++.+++++|+++|
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLD-LAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999 89999999999 999999999999999999
Q ss_pred CCCCC
Q 010439 179 TANPS 183 (510)
Q Consensus 179 a~~~~ 183 (510)
|+++-
T Consensus 160 A~ie~ 164 (169)
T 4gpm_A 160 GWLEH 164 (169)
T ss_dssp -----
T ss_pred CCcCC
Confidence 99853
No 2
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.3e-36 Score=282.68 Aligned_cols=220 Identities=23% Similarity=0.244 Sum_probs=205.8
Q ss_pred cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCC
Q 010439 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (510)
Q Consensus 8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (510)
+|.+.++.+|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|+++|++++.. +..|.
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~ 78 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKAGALVDPK--DAEGS 78 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCCCCC--CTTSC
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHh-CCHHHHHHHHhCCCCCCCC--CCCCC
Confidence 57788999999999999999999999999999999999999999999999998 9999999999999999988 88999
Q ss_pred hHHHHHHHcCCHHHHHHHHHCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439 88 TPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 166 (510)
Q Consensus 88 TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~ 166 (510)
||||+|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|+++|++++ .++..|.|||| +|+..+
T Consensus 79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~ 155 (237)
T 3b7b_A 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLH-WAAFSG 155 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHC
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHCC
Confidence 9999999999999999999998 8999999999999999999999999999999999999 89999999999 999999
Q ss_pred CHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCCC
Q 010439 167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG 243 (510)
Q Consensus 167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~~ 243 (510)
+.+++++|+++|++++.++..+.++++.++..+....+..++. .+.+ ++..|+.|+||+++|+.+..
T Consensus 156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------~gad--~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS--------RDSD--VTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT--------TTCC--TTCCCTTSCCHHHHSCTTCH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH--------cCCC--CCccCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998777765443 3456 67789999999999996553
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-36 Score=290.31 Aligned_cols=219 Identities=21% Similarity=0.181 Sum_probs=168.2
Q ss_pred cChhhhcCCchHHHHHHHHcC-------------CHHHHHHHHHcCCCCcc-cCCCCChHHHHHHHhCCcHHHHHHHHHc
Q 010439 8 MNQHQQRQSKDELLYQWVIAG-------------DVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIEL 73 (510)
Q Consensus 8 ~~~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ 73 (510)
+++|.+|.+|.||||+|+..| +.++|++|+++|++++. .|..|.||||+|+.. |+.+++++|+++
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY-SRSDAAKRLLEA 79 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHc
Confidence 467889999999999999977 99999999999999865 489999999999998 999999999999
Q ss_pred CCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccccccccc
Q 010439 74 GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA-NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF 152 (510)
Q Consensus 74 ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~ 152 (510)
|++++.. |..|+||||+|+..|+.+++++|++++. +++.++..|.||||+|+..|+.+++++|+++|++++ .+|.
T Consensus 80 g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~ 155 (253)
T 1yyh_A 80 SADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDD 155 (253)
T ss_dssp TCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCT
T ss_pred CCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCC
Confidence 9999998 8999999999999999999999999987 999999999999999999999999999999999999 8999
Q ss_pred CCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCc
Q 010439 153 YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK 232 (510)
Q Consensus 153 ~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 232 (510)
.|.|||| +|+..++.+++++|+++|++++.++..+.++++.++..++...+..|+.. +++ +++.|..|+
T Consensus 156 ~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--------ga~--~~~~d~~g~ 224 (253)
T 1yyh_A 156 LGKSALH-WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH--------FAN--RDITDHMDR 224 (253)
T ss_dssp TSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--------TCC--TTCCCTTCC
T ss_pred CCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--------CCC--ccccccCCC
Confidence 9999999 99999999999999999999999999999999999999987777665544 445 667899999
Q ss_pred ceeeehhcCC
Q 010439 233 IRYKFASANE 242 (510)
Q Consensus 233 t~l~~a~~~~ 242 (510)
||+++|....
T Consensus 225 tpl~~A~~~g 234 (253)
T 1yyh_A 225 LPRDIAQERM 234 (253)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHcC
Confidence 9999999543
No 4
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.2e-36 Score=291.11 Aligned_cols=214 Identities=19% Similarity=0.128 Sum_probs=187.0
Q ss_pred hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCC
Q 010439 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (510)
Q Consensus 11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (510)
+.+|.+|.||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+.. |+.+++++|+++|++++.+ |..|+
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~ 79 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGH 79 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSC
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCC
Confidence 56789999999999999999999999999998 888999999999999998 9999999999999999998 89999
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCC-----------------------------------------------CccCCCCCC
Q 010439 88 TPLHHAAKRGLEPTVRLLLSCGAN-----------------------------------------------ALVRNDDCH 120 (510)
Q Consensus 88 TpLh~A~~~g~~~~v~~Ll~~gad-----------------------------------------------~~~~d~~g~ 120 (510)
||||+|+..|+.+++++|+++|++ ++.+|..|.
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 159 (282)
T 1oy3_D 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159 (282)
T ss_dssp CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence 999999999999999999998765 677899999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcccccccccccc-CCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccccccccccccc
Q 010439 121 TALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV 199 (510)
Q Consensus 121 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 199 (510)
||||+|+..|+.+++++|+++|++++ .++. .|.|||| +|+..++.+++++|+++|++++.++..+.+|++.+...+
T Consensus 160 t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 160 TPLHVAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHH-HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence 99999999999999999999999999 7775 4999999 999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439 200 QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240 (510)
Q Consensus 200 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~ 240 (510)
+...+..|+.. +++ ++..+..|.||++++..
T Consensus 237 ~~~~v~~Ll~~--------ga~--~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 237 NPILARLLRAH--------GAP--EPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp CHHHHHHHHHT--------TCC--CCCCC------------
T ss_pred CcHHHHHHHHc--------CCC--cCcCCCcccccccccCC
Confidence 87776655443 556 77899999999999883
No 5
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=284.42 Aligned_cols=217 Identities=20% Similarity=0.173 Sum_probs=193.2
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~ 95 (510)
+|+||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHH
Confidence 689999999999999999999999999999999999999999998 9999999999999999998 8999999999999
Q ss_pred cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 175 (510)
Q Consensus 96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll 175 (510)
.|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll 154 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRACVKKLL 154 (261)
T ss_dssp HTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--cCCCCCCCHHH-HHHHhCCHHHHHHHH
Confidence 9999999999999999985 4569999999999999999999999999999 89999999999 999999999999999
Q ss_pred hCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCCCChHHHHHH
Q 010439 176 PCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWL 251 (510)
Q Consensus 176 ~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~~~~~ql~~~ 251 (510)
++|++++. +..+.++++.++..++...+..++.. +.+ ++..|..|+||+++|+.. .+..+++..
T Consensus 155 ~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~--------gad--~~~~d~~g~tpl~~A~~~-~~~~~~ll~ 218 (261)
T 2xai_A 155 ESGADVNQ-GKGQDSPLHAVARTASEELACLLMDF--------GAD--TQAKNAEGKRPVELVPPE-SPLAQLFLE 218 (261)
T ss_dssp HHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHT--------TCC--TTCCCTTSCCGGGGSCTT-CTHHHHHHH
T ss_pred HcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHc--------CCC--CCCcCCCCCChhhhcccc-ccHHHHHHh
Confidence 99999986 67889999999998887777665443 456 677899999999999943 445554444
No 6
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=287.53 Aligned_cols=224 Identities=20% Similarity=0.168 Sum_probs=203.8
Q ss_pred hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (510)
Q Consensus 10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp 89 (510)
.+.++.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~t~ 128 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWHTP 128 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHT-TCHHHHHHHHHTTCCSSCC--CTTCCCH
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCC--CCCCCCH
Confidence 456789999999999999999999999999999999999999999999997 9999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHH
Q 010439 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 169 (510)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~ 169 (510)
||+|+..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+
T Consensus 129 L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~ 204 (285)
T 3d9h_A 129 LFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRA 204 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHH
T ss_pred HHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcHH
Confidence 999999999999999999999998654 59999999999999999999999999999 89999999999 999999999
Q ss_pred HHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCCCChHHHH
Q 010439 170 IWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQ 249 (510)
Q Consensus 170 ~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~~~~~ql~ 249 (510)
++++|+++|++++. +..+.++++.++..++...+..|+.. +.+ ++..|..|+|||++|+. ..+..+++
T Consensus 205 ~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--------gad--~~~~d~~g~t~l~~A~~-~~~~~~~L 272 (285)
T 3d9h_A 205 CVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF--------GAD--TQAKNAEGKRPVELVPP-ESPLAQLF 272 (285)
T ss_dssp HHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT--------TCC--TTCCCTTSCCGGGGSCT-TSHHHHHH
T ss_pred HHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--------CCC--CCCcCCCCCCHHHHhcC-ccHHHHHH
Confidence 99999999999985 77899999999999998777665543 445 67889999999999994 35555555
Q ss_pred HHH
Q 010439 250 WLD 252 (510)
Q Consensus 250 ~~~ 252 (510)
..+
T Consensus 273 l~~ 275 (285)
T 3d9h_A 273 LER 275 (285)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 7
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=282.79 Aligned_cols=224 Identities=16% Similarity=0.136 Sum_probs=197.1
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g 86 (510)
+.+++.+|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++. +..|
T Consensus 26 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~---~~~g 101 (261)
T 2xai_A 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQP---ESDL 101 (261)
T ss_dssp TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSC---SCTT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCC---CCCC
Confidence 567888999999999999999999999999999999999999999999999998 999999999999999986 4569
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 166 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~ 166 (510)
+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+..|.|||| +|+..+
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~g~t~Lh-~A~~~~ 177 (261)
T 2xai_A 102 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLH-AVARTA 177 (261)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT---CCBTTBCHHH-HHHHHT
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC---CCCCCCChHH-HHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999998 4889999999 999999
Q ss_pred CHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCC
Q 010439 167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE 242 (510)
Q Consensus 167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~ 242 (510)
+.+++++|+++|++++.++..+++|++.+........+ ++............+ +.+.+..|+|+++++....
T Consensus 178 ~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~~--ll~~~~~~~l~~~~~--~~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 178 SEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL--FLEREGPPSLMQLCR--LRIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTCTHHHH--HHHC-CCCCHHHHHH--HHHHTTSCTTCGGGGGGSS
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCChhhhccccccHHHH--HHhccCCccHHHHHH--HHHHHHhchhccccCcccC
Confidence 99999999999999999999999999999976553222 222221111111122 5678889999999988443
No 8
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=7.5e-35 Score=275.69 Aligned_cols=214 Identities=21% Similarity=0.164 Sum_probs=196.8
Q ss_pred hhhcCCchHHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439 11 HQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (510)
Q Consensus 11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g 86 (510)
+.+|.+|.||||+|+..|+.++|++|++ .|.+++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g 79 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHG 79 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCC
Confidence 5679999999999999999999999997 7899999999999999999998 9999999999999999998 8899
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCC----CCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccc-cCCCCHHHHH
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGA----NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEAL 161 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~t~L~~~ 161 (510)
+||||+|+..|+.+++++|++++. +++..|..|.||||+|+..|+.+++++|+++|++++ .++ ..|.|||| +
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~-~ 156 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLI-H 156 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHH-H
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHH-H
Confidence 999999999999999999999987 899999999999999999999999999999999999 777 78999999 9
Q ss_pred hhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439 162 APQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240 (510)
Q Consensus 162 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~ 240 (510)
|+..++.+++++|+++|++++.++..+.++++.+...++...+..|+.. +.+ ++..|..|+||+++|..
T Consensus 157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------ga~--~~~~~~~g~tpl~~A~~ 225 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS--------GAD--SSLKNCHNDTPLMVARS 225 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--------TCC--TTCCCTTSCCTTTTCSS
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--------CCC--CCCcCCCCCCHHHHHHh
Confidence 9999999999999999999999999999999999999987777765543 445 66789999999999984
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.3e-35 Score=294.83 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=197.1
Q ss_pred cccccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCC
Q 010439 4 SLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83 (510)
Q Consensus 4 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d 83 (510)
++++++.+.+|.+|.||||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++|++++ +
T Consensus 7 ~~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~----~ 81 (364)
T 3ljn_A 7 DFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF-GCVDTAKYLASVGEVHS----L 81 (364)
T ss_dssp ---------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-CCHHHHHHHHHHCCCCC----C
T ss_pred hccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCcc----c
Confidence 456788899999999999999999999999999999999999999999999999998 99999999999999776 4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHC----CCCCcc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHh
Q 010439 84 GRGGTPLHHAAKRGLEPTVRLLLSC----GANALV-----------------RNDDCHTALGVARIKG--HINVVRAIES 140 (510)
Q Consensus 84 ~~g~TpLh~A~~~g~~~~v~~Ll~~----gad~~~-----------------~d~~g~TpL~~A~~~g--~~~~v~~Ll~ 140 (510)
..|+||||+|+..|+.+++++|+++ |++++. +|..|.||||+|+..| +.++|++|++
T Consensus 82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~ 161 (364)
T 3ljn_A 82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161 (364)
T ss_dssp BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence 5899999999999999999999999 888877 8899999999999999 9999999999
Q ss_pred ccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCC-----CCCCCccccccccccccccChHHHHHHHHhhcCCC
Q 010439 141 HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA-----NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEP 215 (510)
Q Consensus 141 ~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~-----~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~ 215 (510)
+|++++ .+|..|.|||| +|+..++.+++++|+++|++ ++..+..+.++++.++..++...+..|+.
T Consensus 162 ~ga~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------ 232 (364)
T 3ljn_A 162 LGASPT--AKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE------ 232 (364)
T ss_dssp HTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT------
T ss_pred cCCCCc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH------
Confidence 999999 89999999999 99999999999999999999 99999999999999999999877776544
Q ss_pred CCCCCCCceEEecCCCcceeeehhcC
Q 010439 216 KFHQPDPSLTIYDQATKIRYKFASAN 241 (510)
Q Consensus 216 ~~~~~~~~~~~~d~~~~t~l~~a~~~ 241 (510)
.+.+ ++..|..|.|||++|+..
T Consensus 233 --~gad--~~~~d~~g~tpL~~A~~~ 254 (364)
T 3ljn_A 233 --MGID--VNMEDNEHTVPLYLSVRA 254 (364)
T ss_dssp --TTCC--TTCCCTTSCCHHHHHHHT
T ss_pred --cCCC--CCCCCCCCCCHHHHHHHh
Confidence 3456 678899999999999954
No 10
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-35 Score=280.77 Aligned_cols=216 Identities=21% Similarity=0.203 Sum_probs=170.0
Q ss_pred hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCC--------CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCC
Q 010439 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS--------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82 (510)
Q Consensus 11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~ 82 (510)
..+|..+.++||.||..|++++|++||+.|++ ++..|..|.||||+|+..++...++++|++.|+++|..
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~-- 82 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT-- 82 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC--
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc--
Confidence 34577889999999999999999999998875 46677889999999998744456899999999999998
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHh
Q 010439 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA 162 (510)
Q Consensus 83 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A 162 (510)
|..|+||||+|+..|+.++|++|++.|++++.++..|.||||+|+..++.+++++|+++|++++ .+|..|.|||| +|
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~-~A 159 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLI-YA 159 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHH-HH
Confidence 8999999999999999999999999999999999999999999999999999999999999999 89999999999 99
Q ss_pred hhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439 163 PQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (510)
Q Consensus 163 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~ 241 (510)
+..|+.+++++|+++|++++.++..+.++++.++..++...+..|+. .+++ ++++|+.|+|||++|+.+
T Consensus 160 ~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~--------~Gad--~~~~d~~G~TpL~~A~~~ 228 (269)
T 4b93_B 160 CSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL--------HGAS--VQVLNKRQRTAVDCAEQN 228 (269)
T ss_dssp HHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCTTSCCSGGGSCTT
T ss_pred HHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH--------CCCC--CCCcCCCCCCHHHHHHhC
Confidence 99999999999999999999999999999999999999877776554 3556 778999999999999754
No 11
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.6e-34 Score=266.57 Aligned_cols=211 Identities=18% Similarity=0.125 Sum_probs=190.3
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC-CCCCCChHHHHHH
Q 010439 17 KDELLYQWVIAGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-PGGRGGTPLHHAA 94 (510)
Q Consensus 17 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~-~d~~g~TpLh~A~ 94 (510)
|+||||+|+..|+.++|+.|++++.++.. .|..|.||||+|+.. |+.+++++|+++|++++... ++..|+||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 78999999999999999999999987654 889999999999997 99999999999995444432 3889999999999
Q ss_pred HcCCHHHHHHHHHCC--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439 95 KRGLEPTVRLLLSCG--ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 172 (510)
Q Consensus 95 ~~g~~~~v~~Ll~~g--ad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~ 172 (510)
..|+.+++++|+++| ++++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 157 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIE 157 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHH
Confidence 999999999999998 8999999999999999999999999999999999999 89999999999 999999999999
Q ss_pred HHhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439 173 VVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240 (510)
Q Consensus 173 ~Ll~~g-a~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~ 240 (510)
+|+++| ++++.++..+.++++.++..++...+..++... +.+ ++..|..|+||+++|..
T Consensus 158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~-------ga~--~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY-------GAE--YDLVDNKGAKAEDVALN 217 (228)
T ss_dssp HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-------CCC--SCCBCTTSCBGGGGCSS
T ss_pred HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-------CCC--CCccCCCCCcHHHHHHH
Confidence 999999 999999999999999999999988877666222 345 77889999999999974
No 12
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.8e-34 Score=272.41 Aligned_cols=190 Identities=19% Similarity=0.084 Sum_probs=182.6
Q ss_pred hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CccccCCCCCCChHHH
Q 010439 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPLH 91 (510)
Q Consensus 13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga-~~n~~~~d~~g~TpLh 91 (510)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|+ +++.. +..|+||||
T Consensus 53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~ 129 (253)
T 1yyh_A 53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPLI 129 (253)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCC--CTTCCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccc--CCCCCcHHH
Confidence 488999999999999999999999999999999999999999999998 99999999999997 89988 899999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHH
Q 010439 92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171 (510)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~ 171 (510)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~-~A~~~~~~~~v 206 (253)
T 1yyh_A 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETA 206 (253)
T ss_dssp HHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999 99999999999
Q ss_pred HHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439 172 VVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 208 (510)
Q Consensus 172 ~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~ 208 (510)
++|+++|++++.++..+.++++.+.+.++...+..+.
T Consensus 207 ~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 207 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243 (253)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999877776543
No 13
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2e-33 Score=262.89 Aligned_cols=200 Identities=20% Similarity=0.098 Sum_probs=187.0
Q ss_pred ccChhhh-cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CccccCCCC
Q 010439 7 SMNQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGG 84 (510)
Q Consensus 7 ~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga-~~n~~~~d~ 84 (510)
+.+.+.. |.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++++ +++.. +.
T Consensus 14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~ 90 (223)
T 2f8y_A 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MH 90 (223)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHBTTSCTTCC--CT
T ss_pred CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CC
Confidence 3444443 78999999999999999999999999999999999999999999998 99999999999987 88887 88
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhh
Q 010439 85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ 164 (510)
Q Consensus 85 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~ 164 (510)
.|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+.
T Consensus 91 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~ 167 (223)
T 2f8y_A 91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAR 167 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHH
T ss_pred CCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHH-HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999 9999
Q ss_pred cCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhc
Q 010439 165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI 212 (510)
Q Consensus 165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~ 212 (510)
.++.+++++|+++|++++.++..+.++++.+...++...+..|+....
T Consensus 168 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 999999999999999999999999999999999998887776655443
No 14
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-33 Score=273.02 Aligned_cols=220 Identities=21% Similarity=0.188 Sum_probs=192.6
Q ss_pred cChhhh-cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439 8 MNQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (510)
Q Consensus 8 ~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g 86 (510)
.+.+.+ +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g 105 (285)
T 1wdy_A 29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVNEC--DFYG 105 (285)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTTC
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--Cccc
Confidence 445555 67789999999999999999999999999999999999999999998 8999999999999999988 8899
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCccC----------CCCCCcHHHHHHHcCCHHHHHHHHhc-cccccccccccCCC
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGP 155 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~----------d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~ 155 (510)
+||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++ |++++ .+|..|.
T Consensus 106 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~ 183 (285)
T 1wdy_A 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGR 183 (285)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSC
T ss_pred CCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCC
Confidence 99999999999999999999999998877 77899999999999999999999987 89998 8899999
Q ss_pred CHHHHHhhhcCC----HHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCC
Q 010439 156 SFLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT 231 (510)
Q Consensus 156 t~L~~~A~~~~~----~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~ 231 (510)
|||| +|+..++ .+++++|+++|++++.++..+.++++.++..++...+..++.. .+.+ ++..|..|
T Consensus 184 t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------~g~~--~~~~~~~g 253 (285)
T 1wdy_A 184 NALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-------EHIE--INDTDSDG 253 (285)
T ss_dssp CHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS-------SSCC--TTCCCTTS
T ss_pred CHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-------cCCC--ccccCCCC
Confidence 9999 8888888 8999999999999999998999999999998887777765542 2334 66778889
Q ss_pred cceeeehhcCC
Q 010439 232 KIRYKFASANE 242 (510)
Q Consensus 232 ~t~l~~a~~~~ 242 (510)
+|||++|+...
T Consensus 254 ~t~l~~A~~~~ 264 (285)
T 1wdy_A 254 KTALLLAVELK 264 (285)
T ss_dssp CCHHHHHHHTT
T ss_pred CcHHHHHHHcC
Confidence 99999998543
No 15
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.8e-34 Score=283.35 Aligned_cols=217 Identities=22% Similarity=0.152 Sum_probs=199.3
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g 86 (510)
+.+.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~--~~~g 124 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY-GHYEVTELLLKHGACVNAM--DLWQ 124 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCC
Confidence 466778899999999999999999999999999999999999999999999997 9999999999999999998 8999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCccCC--------------------------------------------------
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRN-------------------------------------------------- 116 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-------------------------------------------------- 116 (510)
+||||+|+..|+.+++++|+++|++++..+
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence 999999999999999999999999987654
Q ss_pred ----CCCCcHHHHHHHc---CCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccc
Q 010439 117 ----DDCHTALGVARIK---GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE 189 (510)
Q Consensus 117 ----~~g~TpL~~A~~~---g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~ 189 (510)
..|.||||+|+.. +..+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.
T Consensus 205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~ 281 (351)
T 3utm_A 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLH-VAAERAHNDVMEVLHKHGAKMNALDSLGQ 281 (351)
T ss_dssp CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 4567999999999 55899999999999999 89999999999 99999999999999999999999999999
Q ss_pred ccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehh
Q 010439 190 LVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS 239 (510)
Q Consensus 190 ~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~ 239 (510)
++++.++..++...+..|+.. +++ +++.|..|+||++++.
T Consensus 282 t~L~~A~~~~~~~~v~~Ll~~--------gad--~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 282 TALHRAALAGHLQTCRLLLSY--------GSD--PSIISLQGFTAAQMGN 321 (351)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT--------TCC--TTCCCTTSCCHHHHSC
T ss_pred CHHHHHHHcCcHHHHHHHHHc--------CCC--CCCcCCCCCChhhhhh
Confidence 999999999997777765543 446 6678999999999984
No 16
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.7e-33 Score=264.79 Aligned_cols=190 Identities=22% Similarity=0.188 Sum_probs=179.9
Q ss_pred hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (510)
Q Consensus 10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp 89 (510)
.+.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~ 109 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GXDEIVKALLVKGAHVNAV--NQNGCTP 109 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc-CHHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence 456788999999999999999999999999999999999999999999998 9999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHH
Q 010439 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 169 (510)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~ 169 (510)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+
T Consensus 110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~ 186 (231)
T 3aji_A 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLH-LACDEERVE 186 (231)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHH-HHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999 89999999999 999999999
Q ss_pred HHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439 170 IWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI 205 (510)
Q Consensus 170 ~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~ 205 (510)
++++|+++|++++.++..+.+|++.+....+...+.
T Consensus 187 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~ 222 (231)
T 3aji_A 187 EAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKR 222 (231)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHH
Confidence 999999999999999999999999997655544333
No 17
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4e-35 Score=277.28 Aligned_cols=215 Identities=20% Similarity=0.208 Sum_probs=189.2
Q ss_pred hhhcCCchHHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGA----SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (510)
Q Consensus 11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g 86 (510)
+.+|.+|.||||+|+..|+.++|++|++.+. ++|.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g 78 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRG 78 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCC
Confidence 5678999999999999999999999998765 7999999999999999998 9999999999999999998 8999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCC------CccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccccccccc-CCCCHHH
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGAN------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLE 159 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~g~t~L~ 159 (510)
+||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++ .++. .|.||||
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~ 156 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALH 156 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCCHHH
Confidence 9999999999999999999999876 57788899999999999999999999999999999 8887 9999999
Q ss_pred HHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehh
Q 010439 160 ALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS 239 (510)
Q Consensus 160 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~ 239 (510)
+|+..++.+++++|+++|++++.++..+.++++.+...++...+..|+. .++++.....+..+.|+++...
T Consensus 157 -~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~--------~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 157 -LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ--------LTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp -HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT--------TSCGGGSSCCCCCTTTCCCCC-
T ss_pred -HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHH--------cchhhhhcCCccchHHHHhhhc
Confidence 9999999999999999999999999999999999999998776665443 3455555667788888888766
No 18
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.3e-33 Score=265.62 Aligned_cols=211 Identities=17% Similarity=0.190 Sum_probs=195.7
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439 14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (510)
Q Consensus 14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~ 92 (510)
+..+.++||.|+..|+++.|+.|++.+. .++..|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||||+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 79 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHI 79 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHc-CcHHHHHHHHHhCCCCCCc--CCCCCCHHHH
Confidence 4567899999999999999999999775 4677899999999999998 9999999999999999988 8999999999
Q ss_pred HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439 93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 172 (510)
Q Consensus 93 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~ 172 (510)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.|||| +|+..++.++++
T Consensus 80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 156 (231)
T 3aji_A 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMH-RAAAKGNLKMVH 156 (231)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHH
T ss_pred HHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 89999999999 999999999999
Q ss_pred HHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439 173 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240 (510)
Q Consensus 173 ~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~ 240 (510)
+|+++|++++.++..+.++++.+...++...+..|+.. +.+ ++..|..|+||+++|..
T Consensus 157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------ga~--~~~~~~~g~t~l~~A~~ 214 (231)
T 3aji_A 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--------GAS--IYIENKEEKTPLQVAKG 214 (231)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--------TCC--SCCCCTTSCCHHHHSCH
T ss_pred HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC--------CCC--CCCCCCCCCCHHHHHHh
Confidence 99999999999999999999999999987777665543 446 67789999999999974
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.7e-33 Score=263.58 Aligned_cols=198 Identities=21% Similarity=0.231 Sum_probs=188.3
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcC-CCccccCCCCC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGR 85 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g-a~~n~~~~d~~ 85 (510)
+.+++..+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++| ++++.. +..
T Consensus 34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~ 110 (237)
T 3b7b_A 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNCQ--DDG 110 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT-TCHHHHHHHHTTTCCCTTCC--CTT
T ss_pred CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCC
Confidence 567788899999999999999999999999999999999999999999999998 9999999999999 899988 889
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165 (510)
Q Consensus 86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~ 165 (510)
|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..
T Consensus 111 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~ 187 (237)
T 3b7b_A 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLH-IAARE 187 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999 89999999999 99999
Q ss_pred CCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010439 166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA 210 (510)
Q Consensus 166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~ 210 (510)
++.+++++|+++|++++.++..+.++++.+...++...+..+.+.
T Consensus 188 ~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~ 232 (237)
T 3b7b_A 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232 (237)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHH
T ss_pred CCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887776665543
No 20
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.2e-33 Score=273.84 Aligned_cols=185 Identities=21% Similarity=0.139 Sum_probs=162.7
Q ss_pred hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC-------------
Q 010439 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN------------- 76 (510)
Q Consensus 10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~------------- 76 (510)
.+.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQS 116 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC--------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcc
Confidence 677889999999999999999999999999999999999999999999997 999999999998866
Q ss_pred ----------------------------------ccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCC-CCc
Q 010439 77 ----------------------------------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-CHT 121 (510)
Q Consensus 77 ----------------------------------~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~T 121 (510)
++.. +..|+||||+|+..|+.+++++|+++|++++.++.. |+|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t 194 (282)
T 1oy3_D 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE--NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194 (282)
T ss_dssp ---------------------------CCCGGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc--CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 5655 789999999999999999999999999999999865 999
Q ss_pred HHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccC
Q 010439 122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ 200 (510)
Q Consensus 122 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~ 200 (510)
|||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.+|+..+..+..
T Consensus 195 pL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 195 PLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCc--ccccCCCCHHH-HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 9999999999999999999999999 89999999999 9999999999999999999999999999999998876553
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.8e-33 Score=264.85 Aligned_cols=194 Identities=20% Similarity=0.163 Sum_probs=183.5
Q ss_pred cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC----CccccC
Q 010439 6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYR 81 (510)
Q Consensus 6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga----~~n~~~ 81 (510)
.+.+.+.+|..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. ++.+++++|+++++ +++..
T Consensus 35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~- 112 (241)
T 1k1a_A 35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEAR- 112 (241)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCC-
T ss_pred cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccccc-
Confidence 3567788899999999999999999999999999999999999999999999997 99999999999998 78877
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHH
Q 010439 82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEA 160 (510)
Q Consensus 82 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~ 160 (510)
|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus 113 -~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~- 188 (241)
T 1k1a_A 113 -NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALH- 188 (241)
T ss_dssp -CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-
T ss_pred -CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-
Confidence 8899999999999999999999999999999999 889999999999999999999999999999 89999999999
Q ss_pred HhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439 161 LAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI 205 (510)
Q Consensus 161 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~ 205 (510)
+|+..++.+++++|+++|++++.++..+.++++.+...+....+.
T Consensus 189 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~ 233 (241)
T 1k1a_A 189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233 (241)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHh
Confidence 999999999999999999999999999999999999877654443
No 22
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=273.18 Aligned_cols=185 Identities=19% Similarity=0.178 Sum_probs=151.9
Q ss_pred hhhhcCCchHHHHHHHHcCCHH-HHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCCh
Q 010439 10 QHQQRQSKDELLYQWVIAGDVD-AIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88 (510)
Q Consensus 10 ~~~~~~~g~t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~T 88 (510)
.+..+..|.||||+|+..++.+ ++++|++.|+++|.+|.+|+||||+|+.. |+.+++++|++.|++++.. +..|.|
T Consensus 45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~~a~~~~~--~~~g~t 121 (269)
T 4b93_B 45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALH-GRADLIPLLLKHGANAGAR--NADQAV 121 (269)
T ss_dssp ------------------------------CCCCTTCCCTTSCCHHHHHHHT-TCTTHHHHHHHTTCCTTCC--CTTCCC
T ss_pred ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHhcCCCcCcc--CCCCCC
Confidence 4567788999999999988764 88999999999999999999999999998 9999999999999999998 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCH
Q 010439 89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 168 (510)
Q Consensus 89 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~ 168 (510)
|||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++ .++..|.|||| +|+..|+.
T Consensus 122 ~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh-~A~~~g~~ 198 (269)
T 4b93_B 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALH-EAVIEKHV 198 (269)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCH
T ss_pred ccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHH-HHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999 89999999999 99999999
Q ss_pred HHHHHHhhCCCCCCCCCccccccccccccccC
Q 010439 169 KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ 200 (510)
Q Consensus 169 ~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~ 200 (510)
+++++|+++|+|++.++..+++|++.+.+.++
T Consensus 199 ~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 99999999999999999999999999987654
No 23
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.6e-33 Score=261.60 Aligned_cols=190 Identities=18% Similarity=0.117 Sum_probs=177.3
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCc-----cccCCCCCCChH
Q 010439 16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI-----NAYRPGGRGGTP 89 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~-----n~~~~d~~g~Tp 89 (510)
.|+||||+|+..|+.++|++||++ |++++.+|..|+||||+|+.. |+.+++++|+++|+++ +.. |..|+||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAPELVFEPMTSE--LYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGCCCCST--TTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCchhcccccccc--CCCCcCH
Confidence 589999999999999999999998 999999999999999999998 9999999999999987 444 7799999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCC-------------CCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCC
Q 010439 90 LHHAAKRGLEPTVRLLLSCGANALVRND-------------DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPS 156 (510)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~-------------~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t 156 (510)
||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++ .+|..|.|
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t 156 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNT 156 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCC
Confidence 9999999999999999999999998876 79999999999999999999999999999 89999999
Q ss_pred HHHHHhhhcCCHHHH----HHHhhCCCCC------CCCCccccccccccccccChHHHHHHHHhh
Q 010439 157 FLEALAPQLMSRKIW----VVVIPCGTAN------PSKPLRFELVIYPSLQDVQPRAVIALWKAK 211 (510)
Q Consensus 157 ~L~~~A~~~~~~~~~----~~Ll~~ga~~------~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~ 211 (510)
||| +|+..++.+++ ++|+++|++. +.++..+.++++.+...++...+..|+...
T Consensus 157 ~L~-~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 157 VLH-ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHH-HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH-HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999 99999999988 9999999988 478889999999999999988887776544
No 24
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-33 Score=288.23 Aligned_cols=219 Identities=21% Similarity=0.158 Sum_probs=185.7
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g 86 (510)
+++++..+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. |+.+++++|+++|+++|.+ +..|
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g 80 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDD 80 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTS
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCC--CCCC
Confidence 567788899999999999999999999999999999999999999999999998 9999999999999999988 8899
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 166 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~ 166 (510)
+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+ ..+..|.|||| +|+..+
T Consensus 81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~-~A~~~g 157 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLH-VAAKYG 157 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTT
T ss_pred CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHH-HHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999888 78889999999 999999
Q ss_pred CHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439 167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (510)
Q Consensus 167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~ 241 (510)
+.+++++|+++|++++..+..+.++++.++..++...+..++.. +.+ ++..+..|.|||++|+..
T Consensus 158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------g~~--~~~~~~~g~t~L~~A~~~ 222 (437)
T 1n11_A 158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR--------GGS--PHSPAWNGYTPLHIAAKQ 222 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG--------TCC--SCCCCTTCCCHHHHHHHT
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--------CCC--CCCcCCCCCCHHHHHHHc
Confidence 99999999999999999998999999999988887776654433 223 344566677888877743
No 25
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=267.29 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=176.2
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g 86 (510)
+.+++.+|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. ..|
T Consensus 82 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~---~~g 157 (285)
T 3d9h_A 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQPE---SDL 157 (285)
T ss_dssp TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSSCS---CTT
T ss_pred CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCCCCC---CCC
Confidence 467788899999999999999999999999999999999999999999999998 9999999999999999864 469
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 166 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~ 166 (510)
+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+..|.|||| +|+..+
T Consensus 158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~~~g~t~L~-~A~~~~ 233 (285)
T 3d9h_A 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLH-AVVRTA 233 (285)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---CCBTTBCHHH-HHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC---CCCCCCCHHH-HHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999998 4889999999 999999
Q ss_pred CHHHHHHHhhCCCCCCCCCccccccccccccc
Q 010439 167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQD 198 (510)
Q Consensus 167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~ 198 (510)
+.+++++|+++|++++.++..+.++++.+...
T Consensus 234 ~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 234 SEELACLLMDFGADTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence 99999999999999999999999999999854
No 26
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8.4e-34 Score=287.16 Aligned_cols=221 Identities=16% Similarity=0.132 Sum_probs=199.9
Q ss_pred cChhhhc-CCchHHHHHHHHcCCHHHHHHHH--------HcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCcc
Q 010439 8 MNQHQQR-QSKDELLYQWVIAGDVDAIRALR--------SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78 (510)
Q Consensus 8 ~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n 78 (510)
.+++.+| ..|.||||+|+..|+.++|++|+ ++|+++|.+|..|.||||+|+.. |+.+++++|+++|++++
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~~~ 193 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGADPT 193 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSC
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHc-ChHHHHHHHHHCCCCCc
Confidence 4566777 78999999999999998888776 79999999999999999999998 99999999999999999
Q ss_pred ccCCCCCCChHHHHHHHcCCHHHHHHHHHCC---CCCccCCCCCCcHHHHHHHcC---CHHHHHHHHhccccccc-----
Q 010439 79 AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKG---HINVVRAIESHICYFCG----- 147 (510)
Q Consensus 79 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~g~TpL~~A~~~g---~~~~v~~Ll~~ga~~~~----- 147 (510)
.. |..|+||||+|+..|+.+++++|++++ ++++..|..|.||||+|+..+ +.+++++|+++|++++.
T Consensus 194 ~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~ 271 (373)
T 2fo1_E 194 IY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 271 (373)
T ss_dssp CC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred cc--CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccc
Confidence 98 899999999999999999999999998 899999999999999999998 89999999999999871
Q ss_pred -cccccCCCCHHHHHhhhcCCHHHHHHHhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceE
Q 010439 148 -WLREFYGPSFLEALAPQLMSRKIWVVVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLT 225 (510)
Q Consensus 148 -~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 225 (510)
..+|..|.|||| +|+..++.+++++|++++ ++++.++..+.++++.++..++...+..|+.. +++ ++
T Consensus 272 ~~~~d~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--------gad--~~ 340 (373)
T 2fo1_E 272 KDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ--------GAS--VE 340 (373)
T ss_dssp TSSSSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--------TCC--SS
T ss_pred cCcccccCCCHHH-HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc--------CCC--cc
Confidence 125778999999 999999999999999876 99999999999999999999998777765543 456 77
Q ss_pred EecCCCcceeeehhcCC
Q 010439 226 IYDQATKIRYKFASANE 242 (510)
Q Consensus 226 ~~d~~~~t~l~~a~~~~ 242 (510)
..|..|+|||++|+...
T Consensus 341 ~~d~~g~t~l~~A~~~g 357 (373)
T 2fo1_E 341 AVDATDHTARQLAQANN 357 (373)
T ss_dssp CCCSSSCCHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHcC
Confidence 78999999999999543
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.3e-32 Score=256.48 Aligned_cols=183 Identities=19% Similarity=0.123 Sum_probs=173.3
Q ss_pred hhcCCchHHHHHHHHcCCHHHHHHHHHcC--CCCcc-cCCCCChHHHHHHHhCCcHHHHHHHHHcC--CCccccCCCCCC
Q 010439 12 QQRQSKDELLYQWVIAGDVDAIRALRSQG--ASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELG--ANINAYRPGGRG 86 (510)
Q Consensus 12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g--a~~n~~~~d~~g 86 (510)
.++.+|.||||+|+..|+.++|++|+++| .+++. .|..|.||||+|+.. |+.+++++|+++| ++++.. +..|
T Consensus 31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~--~~~g 107 (228)
T 2dzn_A 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKI--TNQG 107 (228)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH-CCHHHHHHHHSSSSCCCTTCC--CTTC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccccC--CcCC
Confidence 46889999999999999999999999999 56666 788999999999998 9999999999999 888887 8899
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcc-ccccccccccCCCCHHHHHhhhc
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQL 165 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~t~L~~~A~~~ 165 (510)
+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++| ++++ .+|..|.|||| +|+..
T Consensus 108 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~-~A~~~ 184 (228)
T 2dzn_A 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAE 184 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHT
T ss_pred CCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHH-HHHHc
Confidence 99999999999999999999999999999999999999999999999999999999 9999 89999999999 99999
Q ss_pred CCHHHHHHHh-hCCCCCCCCCccccccccccccccC
Q 010439 166 MSRKIWVVVI-PCGTANPSKPLRFELVIYPSLQDVQ 200 (510)
Q Consensus 166 ~~~~~~~~Ll-~~ga~~~~~~~~~~~~l~~a~~~~~ 200 (510)
++.+++++|+ ++|++++.++..+.++++.+.+...
T Consensus 185 ~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~ 220 (228)
T 2dzn_A 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 220 (228)
T ss_dssp TCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTH
T ss_pred CCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHH
Confidence 9999999999 9999999999999999999976543
No 28
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1e-32 Score=275.09 Aligned_cols=217 Identities=21% Similarity=0.175 Sum_probs=186.7
Q ss_pred hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCccccC----------
Q 010439 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYR---------- 81 (510)
Q Consensus 13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~---------- 81 (510)
.+.+|.|+||.||++|++++|++||++|+++|.++. .|+||||+||.. |+.++|++||++|++++..+
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 345689999999999999999999999999999875 599999999998 99999999999998776532
Q ss_pred ---------------------CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC----------CCCCCcHHHHHHHcC
Q 010439 82 ---------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKG 130 (510)
Q Consensus 82 ---------------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~----------d~~g~TpL~~A~~~g 130 (510)
.|..|+||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 2567999999999999999999999999988754 456899999999999
Q ss_pred CHHHHHHHHh-ccccccccccccCCCCHHHHHhhhcCC----HHHHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439 131 HINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI 205 (510)
Q Consensus 131 ~~~~v~~Ll~-~ga~~~~~~~d~~g~t~L~~~A~~~~~----~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~ 205 (510)
+.++|++|++ .|++++ .+|..|.|+|| .++..+. .+++++|+++|++++.++..+.++++.++..+....+.
T Consensus 180 ~~~~v~~LL~~~gad~n--~~d~~g~t~l~-~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~ 256 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVN--ACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 256 (337)
T ss_dssp CHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhccCCCcC--ccCCCCCcHHH-HHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence 9999999996 589999 89999999999 5544332 46889999999999999999999999999999888777
Q ss_pred HHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCC
Q 010439 206 ALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE 242 (510)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~ 242 (510)
.++.. .+.+ ++..|..|+||||+|+...
T Consensus 257 ~Ll~~-------~~~~--vn~~d~~G~TpL~~A~~~g 284 (337)
T 4g8k_A 257 RLLEQ-------EHIE--INDTDSDGKTALLLAVELK 284 (337)
T ss_dssp HHHTS-------TTCC--TTCBCTTSCBHHHHHHHTT
T ss_pred HHHHh-------cCCc--ccCcCCCCCCHHHHHHHcC
Confidence 65432 2345 7788999999999999543
No 29
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-32 Score=284.86 Aligned_cols=220 Identities=22% Similarity=0.189 Sum_probs=186.2
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g 86 (510)
+.+.+..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|+++|++++.. +..|
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g 245 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLLQYGGSANAE--SVQG 245 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCC
Confidence 345666777888888888888888888888888888888888888888888886 8888888888888888877 7788
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 166 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~ 166 (510)
.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..+
T Consensus 246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g 322 (437)
T 1n11_A 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--ATTRMGYTPLH-VASHYG 322 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCSSCCCHHH-HHHHSS
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC--CCCCCCCCHHH-HHHHcC
Confidence 899999988889999999998888888888889999999999999999999999999888 88889999999 899999
Q ss_pred CHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCC
Q 010439 167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE 242 (510)
Q Consensus 167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~ 242 (510)
+.+++++|+++|++++.++..+.++++.++..++...+..|+.. +++ ++..|..|+||+++|....
T Consensus 323 ~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~--------ga~--~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN--------GAS--PNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--------TCC--SCCCCSSSCCHHHHHHHTT
T ss_pred cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC--------cCC--CCCCCCCCCCHHHHHHHcC
Confidence 99999999999999999988899999999988887776655443 445 6678889999999988544
No 30
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-32 Score=265.18 Aligned_cols=212 Identities=21% Similarity=0.193 Sum_probs=192.3
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (510)
Q Consensus 15 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A 93 (510)
.+|.|+||+|+..|+.++|++|+++|++++.. +..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+|
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A 79 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLR--KKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHH
Confidence 46899999999999999999999999999988 78899999999998 9999999999999999998 89999999999
Q ss_pred HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccccccc----------ccCCCCHHHHHhh
Q 010439 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR----------EFYGPSFLEALAP 163 (510)
Q Consensus 94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------d~~g~t~L~~~A~ 163 (510)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+ +..|.|||| +|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~~~~~~~~~g~t~L~-~A~ 156 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALM-DAA 156 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCCCCHHHHHTTCCCCCHHH-HHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc--cccccHHHHHhhccCCCcHHH-HHH
Confidence 99999999999999999999999999999999999999999999999999988 55 788999999 999
Q ss_pred hcCCHHHHHHHhhC-CCCCCCCCccccccccccccccCh----HHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeeh
Q 010439 164 QLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDVQP----RAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFA 238 (510)
Q Consensus 164 ~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~l~~a~~~~~~----~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a 238 (510)
..++.+++++|++. |++++..+..+.++++.++..... ..+..++. .+.+ ++..|..|.||||+|
T Consensus 157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~--------~g~~--~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD--------HGAD--VNVRGERGKTPLILA 226 (285)
T ss_dssp HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH--------TTCC--SSCCCTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH--------cCCC--CCCcCCCCCcHHHHH
Confidence 99999999999987 999999999999999999877763 33332222 2445 677888999999999
Q ss_pred hcCC
Q 010439 239 SANE 242 (510)
Q Consensus 239 ~~~~ 242 (510)
+...
T Consensus 227 ~~~~ 230 (285)
T 1wdy_A 227 VEKK 230 (285)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9543
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=7.7e-32 Score=263.75 Aligned_cols=188 Identities=23% Similarity=0.259 Sum_probs=171.7
Q ss_pred hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (510)
Q Consensus 13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~ 92 (510)
.+.+|.|+||+|+..|+.++|++||++|+++|..|..|.||||+||.. |+.+++++|+++|++++.. |..|+||||+
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~ 112 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHA 112 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcHHHH
Confidence 356789999999999999999999999999999999999999999997 9999999999999999998 8899999999
Q ss_pred HHHcCCHHHHHHHHHCCCCCccCCC-------------------------------------------------------
Q 010439 93 AAKRGLEPTVRLLLSCGANALVRND------------------------------------------------------- 117 (510)
Q Consensus 93 A~~~g~~~~v~~Ll~~gad~~~~d~------------------------------------------------------- 117 (510)
|+..|+.+++++|+++|++++.+|.
T Consensus 113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 9999999999999999999876654
Q ss_pred -----CCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccc
Q 010439 118 -----DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192 (510)
Q Consensus 118 -----~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l 192 (510)
.|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.+|+
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l 269 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 46788899999999999999999999999 89999999999 99999999999999999999999999999999
Q ss_pred cccccccChHHHHHH
Q 010439 193 YPSLQDVQPRAVIAL 207 (510)
Q Consensus 193 ~~a~~~~~~~~i~~l 207 (510)
+.+.++ ....+..+
T Consensus 270 ~~A~~~-~~~~l~~l 283 (299)
T 1s70_B 270 DVADED-ILGYLEEL 283 (299)
T ss_dssp TSCCSG-GGHHHHHH
T ss_pred HHHHHH-HHHHHHHH
Confidence 999754 33444443
No 32
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1e-32 Score=278.06 Aligned_cols=230 Identities=17% Similarity=0.144 Sum_probs=202.2
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHc----CCCccc---
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA--- 79 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~----ga~~n~--- 79 (510)
+++++.+|..|.||||+|+..|+.++|++|+++|++++. .+|.||||+|+.. |+.+++++|+++ |++++.
T Consensus 43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~ 119 (364)
T 3ljn_A 43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLLN 119 (364)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT-TCHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc-CCHHHHHHHHHhccccCCCHHHHHh
Confidence 567888999999999999999999999999999997644 5799999999997 999999999999 888887
Q ss_pred --------------cCCCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccc
Q 010439 80 --------------YRPGGRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143 (510)
Q Consensus 80 --------------~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga 143 (510)
. |..|+||||+|+..| +.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|+
T Consensus 120 ~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 120 ECDEREVNEIGSHVK--HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197 (364)
T ss_dssp CCCCCCEEEETTEEE--EESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred hcchHhhhhhccccC--CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 6 789999999999999 9999999999999999999999999999999999999999999999
Q ss_pred c-----ccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcC----C
Q 010439 144 Y-----FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKID----E 214 (510)
Q Consensus 144 ~-----~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~----~ 214 (510)
+ ++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+..|+..... .
T Consensus 198 ~~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 274 (364)
T 3ljn_A 198 SKSSLRLD--YANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274 (364)
T ss_dssp CSSSCCTT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred cccccccc--ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhc
Confidence 9 88 89999999999 99999999999999999999999999999999999999998888877754211 1
Q ss_pred CCCCCCCCceEEecCCCcceeeehhcCCCChH
Q 010439 215 PKFHQPDPSLTIYDQATKIRYKFASANEGDKH 246 (510)
Q Consensus 215 ~~~~~~~~~~~~~d~~~~t~l~~a~~~~~~~~ 246 (510)
...+... ....+..+.++++.++.......
T Consensus 275 ~~~~~~~--~~~~~~~~~~~l~~aa~~~~~~~ 304 (364)
T 3ljn_A 275 CPYHNGT--TVLPDRVVWLDFVPAAADPSKQE 304 (364)
T ss_dssp CTTBSSS--SBCGGGCCCCTTSCSSCCHHHHH
T ss_pred CcccCcc--cccccccccccchhhhhccCHHH
Confidence 1112222 34567778999988885543333
No 33
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=1.3e-32 Score=251.55 Aligned_cols=163 Identities=25% Similarity=0.227 Sum_probs=158.0
Q ss_pred hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (510)
Q Consensus 10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp 89 (510)
.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~ 104 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKGSNVNTK--DFSGKTP 104 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTSCCH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcH
Confidence 466899999999999999999999999999999999999999999999998 9999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHH
Q 010439 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 169 (510)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~ 169 (510)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~ 181 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEA-SARIFGRQE 181 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCcHH
Confidence 999999999999999999999999999999999999999999999999999999999 89999999999 999999999
Q ss_pred HHHHHhhCC
Q 010439 170 IWVVVIPCG 178 (510)
Q Consensus 170 ~~~~Ll~~g 178 (510)
++++|+++|
T Consensus 182 ~v~~Ll~~~ 190 (192)
T 2rfm_A 182 VIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999999865
No 34
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=9.8e-32 Score=240.57 Aligned_cols=160 Identities=25% Similarity=0.350 Sum_probs=152.7
Q ss_pred hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (510)
Q Consensus 13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~ 92 (510)
....+.++||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||||+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 86 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAV--DHAGMTPLRL 86 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHH
Confidence 356789999999999999999999999999999999999999999998 9999999999999999998 8899999999
Q ss_pred HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439 93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 172 (510)
Q Consensus 93 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~ 172 (510)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.++++
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~ 163 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFD-ISIDNGNEDLAE 163 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 89999999999 999999999999
Q ss_pred HHhhCC
Q 010439 173 VVIPCG 178 (510)
Q Consensus 173 ~Ll~~g 178 (510)
+|++.|
T Consensus 164 ~L~~~G 169 (169)
T 2y1l_E 164 ILQKLN 169 (169)
T ss_dssp HHHTC-
T ss_pred HHHHcC
Confidence 999876
No 35
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=8e-32 Score=247.74 Aligned_cols=189 Identities=21% Similarity=0.188 Sum_probs=176.9
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439 14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (510)
Q Consensus 14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~ 92 (510)
+..+.|+||+|+..|+.+.|+.||.++. +++..|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||||+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~ 78 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDRGADINLQ--NSISDSPYLY 78 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence 3568899999999999999999999886 9999999999999999998 9999999999999999998 8999999999
Q ss_pred HHHcCCHHHHHHHH-HCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcc-ccccccccccCCCCHHHHHhhhcCC---
Q 010439 93 AAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMS--- 167 (510)
Q Consensus 93 A~~~g~~~~v~~Ll-~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~t~L~~~A~~~~~--- 167 (510)
|+..|+.+++++|+ ..+++++.+|..|.||||+|+..|+.+++++|+++| ++++ .+|..|.|||| +|+..+.
T Consensus 79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~-~A~~~~~~~~ 155 (201)
T 3hra_A 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALI-EAVGLREGNQ 155 (201)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHH-HHHHSSCCSH
T ss_pred HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHH-HHHHhccchh
Confidence 99999999999999 678899999999999999999999999999999999 8998 89999999999 8998887
Q ss_pred --HHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439 168 --RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 208 (510)
Q Consensus 168 --~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~ 208 (510)
.+++++|+++|++++.++..+.++++.+...++...+..++
T Consensus 156 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp HHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 99999999999999999999999999999988877766543
No 36
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=255.81 Aligned_cols=216 Identities=17% Similarity=0.129 Sum_probs=197.1
Q ss_pred hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHH
Q 010439 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90 (510)
Q Consensus 11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpL 90 (510)
+..|..|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++... +..|+|||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~-~~~~~t~L 80 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYISKGAIVDQLG-GDLNSTPL 80 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCB-TTTTBCHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHh-CCHHHHHHHHHcCCcchhhc-CCcCCChh
Confidence 44688999999999999999999999999999999999999999999997 99999999999999998763 56699999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCC-HH
Q 010439 91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS-RK 169 (510)
Q Consensus 91 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~-~~ 169 (510)
|+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++ .++..|.|||| +|+..++ .+
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~ 157 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLM-WAAYRTHSVD 157 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCSST
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHH-HHHHhCChHH
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999 7875555 89
Q ss_pred HHHHHhhCCCCCCCCCc-cccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439 170 IWVVVIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (510)
Q Consensus 170 ~~~~Ll~~ga~~~~~~~-~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~ 241 (510)
++++|++.|++++..+. .+.++++.++..++...+..++.. +.+ ++..|..|+||+++|+..
T Consensus 158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------g~~--~~~~~~~g~t~l~~A~~~ 220 (240)
T 3eu9_A 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--------GAN--VDAQNIKGESALDLAKQR 220 (240)
T ss_dssp THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--------TCC--TTCBCTTSCBHHHHHHHT
T ss_pred HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--------CCC--CCCcCCCCCCHHHHHHHc
Confidence 99999999999998886 889999999999988877765544 345 567888999999999954
No 37
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.98 E-value=2.7e-32 Score=272.54 Aligned_cols=219 Identities=20% Similarity=0.161 Sum_probs=197.4
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~ 85 (510)
..+.+..+..|.|+||.|+..|+.+.|+.||.. +.+++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..
T Consensus 14 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~ 90 (351)
T 3utm_A 14 SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY-NRVRIVQLLLQHGADVHAK--DKG 90 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred ceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCC
Confidence 344566778899999999999999999988885 889999999999999999998 9999999999999999998 899
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccccccc---------------
Q 010439 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR--------------- 150 (510)
Q Consensus 86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~--------------- 150 (510)
|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus 91 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~~~l~~a~~~~ 168 (351)
T 3utm_A 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT--LVNCHGKSAVDMAPTPE 168 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCSSHH
T ss_pred CCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCcchHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999876 33
Q ss_pred ---------------------------------------ccCCCCHHHHHhhhc---CCHHHHHHHhhCCCCCCCCCccc
Q 010439 151 ---------------------------------------EFYGPSFLEALAPQL---MSRKIWVVVIPCGTANPSKPLRF 188 (510)
Q Consensus 151 ---------------------------------------d~~g~t~L~~~A~~~---~~~~~~~~Ll~~ga~~~~~~~~~ 188 (510)
+..|.|||| +|+.. +..+++++|+++|++++.++..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~-~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g 247 (351)
T 3utm_A 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAVASLHPKRKQVAELLLRKGANVNEKNKDF 247 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH-HHHHCCSTTHHHHHHHHHHTTCCTTCCCTTC
T ss_pred hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH-HHHHHhCccHHHHHHHHHHcCCCcCCcCCCC
Confidence 355778999 88887 55899999999999999999999
Q ss_pred cccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439 189 ELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (510)
Q Consensus 189 ~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~ 241 (510)
.++++.++..++...+..|+.. +.+ ++..|..|+|||++|+..
T Consensus 248 ~t~L~~A~~~g~~~~v~~Ll~~--------ga~--~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 248 MTPLHVAAERAHNDVMEVLHKH--------GAK--MNALDSLGQTALHRAALA 290 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHT--------TCC--TTCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHC--------CCC--CCCcCCCCCCHHHHHHHc
Confidence 9999999999998777765543 345 677899999999999944
No 38
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=2.7e-32 Score=257.81 Aligned_cols=182 Identities=23% Similarity=0.142 Sum_probs=166.9
Q ss_pred cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC------ccccC
Q 010439 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN------INAYR 81 (510)
Q Consensus 8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~------~n~~~ 81 (510)
.+++.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++ ++..
T Consensus 36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~- 113 (236)
T 1ikn_D 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKAT- 113 (236)
T ss_dssp CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCC-
T ss_pred HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhHHHHhhcc-
Confidence 35778899999999999999999999999999999999999999999999998 999999999999986 4555
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHH
Q 010439 82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEA 160 (510)
Q Consensus 82 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~ 160 (510)
+..|+||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.++|++|+++|++++ .+|..|.||||
T Consensus 114 -~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~- 189 (236)
T 1ikn_D 114 -NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ- 189 (236)
T ss_dssp -CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-
T ss_pred -CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH-
Confidence 78899999999999999999999999999999998 99999999999999999999999999999 89999999999
Q ss_pred HhhhcCCHHHHHHHhhCCCCCC--CCCcccccccccc
Q 010439 161 LAPQLMSRKIWVVVIPCGTANP--SKPLRFELVIYPS 195 (510)
Q Consensus 161 ~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~l~~a 195 (510)
+|+..++.+++++|+++|++.. ..+..++++....
T Consensus 190 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp GCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred HHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence 9999999999999999999765 4444455544433
No 39
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.98 E-value=2.7e-32 Score=276.13 Aligned_cols=198 Identities=15% Similarity=0.082 Sum_probs=186.5
Q ss_pred cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcC---CCccccCC
Q 010439 6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAYRP 82 (510)
Q Consensus 6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g---a~~n~~~~ 82 (510)
.+++++.+|..|.||||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++| ++++..
T Consensus 155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~-- 231 (373)
T 2fo1_E 155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEEL-- 231 (373)
T ss_dssp TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCC--
T ss_pred cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhc--
Confidence 4678889999999999999999999999999999999999999999999999998 9999999999998 899988
Q ss_pred CCCCChHHHHHHHcC---CHHHHHHHHHCCCCCcc--------CCCCCCcHHHHHHHcCCHHHHHHHHhcc-cccccccc
Q 010439 83 GGRGGTPLHHAAKRG---LEPTVRLLLSCGANALV--------RNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLR 150 (510)
Q Consensus 83 d~~g~TpLh~A~~~g---~~~~v~~Ll~~gad~~~--------~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~ 150 (510)
|..|+||||+|+..+ +.+++++|+++|++++. .|..|.||||+|+..|+.++|++|++++ ++++ .+
T Consensus 232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n--~~ 309 (373)
T 2fo1_E 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQ 309 (373)
T ss_dssp CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CC
T ss_pred CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc--Cc
Confidence 899999999999998 89999999999999986 6779999999999999999999999886 9999 89
Q ss_pred ccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHH
Q 010439 151 EFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK 209 (510)
Q Consensus 151 d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~ 209 (510)
|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+..|..
T Consensus 310 d~~g~TpL~-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 310 DEDGKTPIM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367 (373)
T ss_dssp CTTCCCHHH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999998777765543
No 40
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.98 E-value=6.8e-32 Score=239.45 Aligned_cols=159 Identities=22% Similarity=0.290 Sum_probs=150.5
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHH
Q 010439 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94 (510)
Q Consensus 15 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~ 94 (510)
....|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++.+ |..|+||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~ 78 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL--GNPEIARRLLLRGANPDLK--DRTGFAVIHDAA 78 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS--SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc--CcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH
Confidence 456799999999999999999999999999999999999999985 8899999999999999998 899999999999
Q ss_pred HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc-ccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010439 95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY-FCGWLREFYGPSFLEALAPQLMSRKIWVV 173 (510)
Q Consensus 95 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~d~~g~t~L~~~A~~~~~~~~~~~ 173 (510)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++ .+|..|.|||| +|+..++.+++++
T Consensus 79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSL 155 (162)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 57 89999999999 9999999999999
Q ss_pred HhhCCCC
Q 010439 174 VIPCGTA 180 (510)
Q Consensus 174 Ll~~ga~ 180 (510)
|+++|+|
T Consensus 156 Ll~~GAd 162 (162)
T 1ihb_A 156 MQANGAG 162 (162)
T ss_dssp HHHTC--
T ss_pred HHHhCCC
Confidence 9999985
No 41
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.98 E-value=6.6e-33 Score=270.03 Aligned_cols=191 Identities=15% Similarity=0.134 Sum_probs=177.6
Q ss_pred ChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCCh
Q 010439 9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88 (510)
Q Consensus 9 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~T 88 (510)
+.+.+|.+|.||||+|+..|+.++|++|+++|++++..| |.||||+|+.. |+.+++++|+++|++++.. |..|+|
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~t 97 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQF--DDKGNT 97 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTS-SSCHHHHHHHHTTCCTTCC--CTTSCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCc
Confidence 567889999999999999999999999999999998874 99999999997 9999999999999999998 889999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCccCCCCC-CcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCC
Q 010439 89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDC-HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 167 (510)
Q Consensus 89 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g-~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~ 167 (510)
|||+|+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|+++|++.. ....|.|||| +|+..++
T Consensus 98 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~g~t~L~-~A~~~g~ 173 (285)
T 3kea_A 98 ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIH-ITIKNGH 173 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC---CCSTHHHHHH-HHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc---cccCCccHHH-HHHHcCh
Confidence 9999999999999999999999999999999 799999999999999999999998875 1238999999 9999999
Q ss_pred HHHHHHHhhCCCCCCCCCcccccc-ccccccccChHHHHHHH
Q 010439 168 RKIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVIALW 208 (510)
Q Consensus 168 ~~~~~~Ll~~ga~~~~~~~~~~~~-l~~a~~~~~~~~i~~l~ 208 (510)
.+++++|+++|++++.++..+.++ ++.+...++...+..|+
T Consensus 174 ~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll 215 (285)
T 3kea_A 174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF 215 (285)
T ss_dssp HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999997 99999888866666543
No 42
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.98 E-value=3.7e-32 Score=243.84 Aligned_cols=168 Identities=23% Similarity=0.182 Sum_probs=155.2
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439 17 KDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (510)
Q Consensus 17 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~ 95 (510)
+.||||+|+..|+.++|+.|++++.+ ++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHIL--AKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCchhh--cccCCCHHHHHHH
Confidence 46899999999999999999999987 888999999999999998 9999999999999999998 8899999999999
Q ss_pred cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 175 (510)
Q Consensus 96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll 175 (510)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~ 155 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMD-LAVALGYRKVQQVIE 155 (172)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHhCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 89999999999 999999999999999
Q ss_pred hCCCCCCCCCccccc
Q 010439 176 PCGTANPSKPLRFEL 190 (510)
Q Consensus 176 ~~ga~~~~~~~~~~~ 190 (510)
++|++...++..+.+
T Consensus 156 ~~~~~~~~~~~~~~~ 170 (172)
T 3v30_A 156 NHILKLFQSNLVPAD 170 (172)
T ss_dssp HHHHHHSCC------
T ss_pred HHHHHHhcccCCCCC
Confidence 999988776655444
No 43
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.98 E-value=7e-32 Score=240.83 Aligned_cols=160 Identities=23% Similarity=0.231 Sum_probs=155.0
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~ 95 (510)
.|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. +..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLL--GKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHH
Confidence 578999999999999999999999999999999999999999998 9999999999999999998 8999999999999
Q ss_pred cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 175 (510)
Q Consensus 96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll 175 (510)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMD-LAVALGYRSVQQVIE 155 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 89999999999 999999999999999
Q ss_pred hCCCCC
Q 010439 176 PCGTAN 181 (510)
Q Consensus 176 ~~ga~~ 181 (510)
+++++.
T Consensus 156 ~~~~~~ 161 (167)
T 3v31_A 156 SHLLKL 161 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1e-31 Score=252.94 Aligned_cols=176 Identities=20% Similarity=0.155 Sum_probs=159.8
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCC-----cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASL-----EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR 81 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~ 81 (510)
+.+++.+|..|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+.. |+.+++++|+++|++++..+
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~ 105 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN-QNVNLVRALLARGASVSARA 105 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHc-CCHHHHHHHHhCCCCCCccc
Confidence 6788889999999999999999999999999999887 67788999999999998 99999999999999999873
Q ss_pred C-----------CCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHH----HHHHhcccccc
Q 010439 82 P-----------GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV----RAIESHICYFC 146 (510)
Q Consensus 82 ~-----------d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v----~~Ll~~ga~~~ 146 (510)
. |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++ ++|+++|++..
T Consensus 106 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp CSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred CCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence 1 22799999999999999999999999999999999999999999999999988 99999999872
Q ss_pred c----cccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCC
Q 010439 147 G----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSK 184 (510)
Q Consensus 147 ~----~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~ 184 (510)
. +.+|..|.|||| +|+..++.+++++|+++|++....
T Consensus 186 ~~~~~~~~~~~g~tpl~-~A~~~g~~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 186 LKSLELVPNNQGLTPFK-LAGVEGNIVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp SCCGGGCCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHHC---
T ss_pred hhhhhccCCCCCCCHHH-HHHHcCCHHHHHHHHhcCccchhh
Confidence 0 178999999999 999999999999999999766443
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.4e-31 Score=243.52 Aligned_cols=165 Identities=20% Similarity=0.217 Sum_probs=158.2
Q ss_pred cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHH-HcCCCccccCCCCCC
Q 010439 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRG 86 (510)
Q Consensus 8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll-~~ga~~n~~~~d~~g 86 (510)
.+++.++.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+ ..+++++.. |..|
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~g 106 (201)
T 3hra_A 30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKH--NRYG 106 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCC--CTTS
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhccCcccccc--cCCC
Confidence 46788899999999999999999999999999999999999999999999998 9999999999 667799988 8899
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCC-CCCccCCCCCCcHHHHHHHcCC-----HHHHHHHHhccccccccccccCCCCHHHH
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGH-----INVVRAIESHICYFCGWLREFYGPSFLEA 160 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~ 160 (510)
.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++ .+++++|+++|++++ .+|..|.||||
T Consensus 107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~- 183 (201)
T 3hra_A 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRTAMD- 183 (201)
T ss_dssp CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCCHHH-
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCCHHH-
Confidence 99999999999999999999999 9999999999999999999998 999999999999999 89999999999
Q ss_pred HhhhcCCHHHHHHHhhCC
Q 010439 161 LAPQLMSRKIWVVVIPCG 178 (510)
Q Consensus 161 ~A~~~~~~~~~~~Ll~~g 178 (510)
+|+..++.+++++|+++|
T Consensus 184 ~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 184 YANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHTCHHHHHHHHTCC
T ss_pred HHHHcCCHhHHHHHHhcC
Confidence 999999999999999887
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=4.2e-32 Score=259.78 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=156.6
Q ss_pred CchHHHHHHHHcCCHH----HHHHHHHcCCCCcc----cCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCcccc-----
Q 010439 16 SKDELLYQWVIAGDVD----AIRALRSQGASLEW----MDKEGKTPLIVACMD--SGLINVAKTLIELGANINAY----- 80 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~d~~g~TpL~~A~~~--~~~~~~v~~Ll~~ga~~n~~----- 80 (510)
.|+||||+|+..|+.+ ++++|+++|++++. +|..|+||||+|+.. .|+.+++++|+++|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3788888888888886 55667778888887 788888888888873 17788888888888777633
Q ss_pred ----CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCC-------------CCcHHHHHHHcCCHHHHHHHHh---
Q 010439 81 ----RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-------------CHTALGVARIKGHINVVRAIES--- 140 (510)
Q Consensus 81 ----~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-------------g~TpL~~A~~~g~~~~v~~Ll~--- 140 (510)
+.|..|+||||+|+..|+.+++++|+++|++++.+|.. |.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 12467888888888888888888888888888888876 8888888888888888888888
Q ss_pred ccccccccccccCCCCHHHHHhhh--cCCHH-------HHHHHhhCCCCC-------CCCCccccccccccccccChHHH
Q 010439 141 HICYFCGWLREFYGPSFLEALAPQ--LMSRK-------IWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAV 204 (510)
Q Consensus 141 ~ga~~~~~~~d~~g~t~L~~~A~~--~~~~~-------~~~~Ll~~ga~~-------~~~~~~~~~~l~~a~~~~~~~~i 204 (510)
+|++++ .+|..|.|||| +|+. .++.+ ++++|+++|+++ +.++..+.++++.+...++...+
T Consensus 161 ~ga~~n--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v 237 (256)
T 2etb_A 161 QPASLE--ATDSLGNTVLH-ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237 (256)
T ss_dssp CCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cCCCcC--ccCCCCCCHHH-HHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence 888888 88888888888 7877 77777 888888888888 77888888888888888887777
Q ss_pred HHHHH
Q 010439 205 IALWK 209 (510)
Q Consensus 205 ~~l~~ 209 (510)
..|+.
T Consensus 238 ~~Ll~ 242 (256)
T 2etb_A 238 RHILQ 242 (256)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66553
No 47
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=2.8e-31 Score=239.93 Aligned_cols=167 Identities=23% Similarity=0.255 Sum_probs=157.1
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439 15 QSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (510)
Q Consensus 15 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A 93 (510)
..+.++||.|+..|+.++|++||++ +.+++..|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-GRSAVVEMLIMRGARINVM--NRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence 4678999999999999999999998 678999999999999999998 9999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010439 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 173 (510)
Q Consensus 94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~ 173 (510)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||+ +|+..++.+++++
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~~~~ 156 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVD-KAKAPLRELLRER 156 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGG-GSCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999 9999999999999
Q ss_pred HhhCCCCCCCCCcc
Q 010439 174 VIPCGTANPSKPLR 187 (510)
Q Consensus 174 Ll~~ga~~~~~~~~ 187 (510)
|+++|++++..+..
T Consensus 157 L~~~g~~~~~~~~~ 170 (179)
T 3f6q_A 157 AEKMGQNLNRIPYK 170 (179)
T ss_dssp HHHTTCCCSCBCCC
T ss_pred HHHhhcCcccCCcc
Confidence 99999999876643
No 48
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=8.4e-31 Score=245.00 Aligned_cols=169 Identities=22% Similarity=0.209 Sum_probs=163.0
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~ 85 (510)
+.+++.++..|.||||+|+..|+.++|++|++++. +++..+..|.||||+|+.. ++.+++++|+++|++++.. |..
T Consensus 48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~ 124 (223)
T 2f8y_A 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAV--DDL 124 (223)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh-CcHHHHHHHHHcCCCCcCc--CCC
Confidence 56778889999999999999999999999999987 8999999999999999998 9999999999999999998 899
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165 (510)
Q Consensus 86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~ 165 (510)
|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..
T Consensus 125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~ 201 (223)
T 2f8y_A 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRD-IAQER 201 (223)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHH-HHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999 89999999999 99999
Q ss_pred CCHHHHHHHhhCCCCC
Q 010439 166 MSRKIWVVVIPCGTAN 181 (510)
Q Consensus 166 ~~~~~~~~Ll~~ga~~ 181 (510)
++.+++++|+++|+..
T Consensus 202 ~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 202 MHHDIVRLLDEYNLVR 217 (223)
T ss_dssp TCHHHHHHHHHTTCSS
T ss_pred cchHHHHHHHHcCCCc
Confidence 9999999999999865
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.4e-31 Score=236.87 Aligned_cols=138 Identities=33% Similarity=0.468 Sum_probs=130.0
Q ss_pred cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439 6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85 (510)
Q Consensus 6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~ 85 (510)
.++++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.. |+.+++++|+++|+++|.+ |..
T Consensus 26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gadvn~~--d~~ 102 (169)
T 4gpm_A 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSD 102 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCC
Confidence 3678899999999999999999999999999999999999999999999999998 9999999999999999998 899
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146 (510)
Q Consensus 86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 146 (510)
|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 103 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 103 GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999987
No 50
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=4.7e-31 Score=234.98 Aligned_cols=160 Identities=24% Similarity=0.241 Sum_probs=149.5
Q ss_pred hcCCchHHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHH
Q 010439 13 QRQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91 (510)
Q Consensus 13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh 91 (510)
.+.+|.|+||.|+..|+.++|+.|++ .+.+++..+..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY-NRVSVVEYLLQHGADVHAK--DKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCcc--CCCCCCHHH
Confidence 37789999999999999999999999 4567888889999999999998 9999999999999999998 889999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHH
Q 010439 92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171 (510)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~ 171 (510)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|.. ++.+++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~a~~-~~~~i~ 156 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLD-LVKD-GDTDIQ 156 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGG-GSCT-TCHHHH
T ss_pred HHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhH-hHhc-CChHHH
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999 7766 899999
Q ss_pred HHHhhCCC
Q 010439 172 VVVIPCGT 179 (510)
Q Consensus 172 ~~Ll~~ga 179 (510)
++|+++|+
T Consensus 157 ~~L~~~gA 164 (165)
T 3twr_A 157 DLLRGDAA 164 (165)
T ss_dssp HHHHTC--
T ss_pred HHHhhccc
Confidence 99999886
No 51
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.3e-30 Score=229.17 Aligned_cols=152 Identities=24% Similarity=0.257 Sum_probs=146.5
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~ 95 (510)
+..|+||.|+..|+.++|++|+++|++++ .|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||||+|+.
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 76 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAAS 76 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHH
T ss_pred CccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHH
Confidence 35799999999999999999999999887 588999999999998 9999999999999999998 8899999999999
Q ss_pred cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHH
Q 010439 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 174 (510)
Q Consensus 96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~L 174 (510)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|
T Consensus 77 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~~L 152 (153)
T 1awc_B 77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL 152 (153)
T ss_dssp HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 89999999999 99999999999987
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.2e-31 Score=259.30 Aligned_cols=203 Identities=16% Similarity=0.174 Sum_probs=171.6
Q ss_pred cChhhhcCCchHHHHHHHHcCCHHHHHHHHH----cCCCCc----ccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCc
Q 010439 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLE----WMDKEGKTPLIVACMD--SGLINVAKTLIELGANI 77 (510)
Q Consensus 8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~d~~g~TpL~~A~~~--~~~~~~v~~Ll~~ga~~ 77 (510)
...+..|..|.|+||+|+..|+.++|+.||+ .+++++ ..|..|+||||+|+.. .|+.+++++|+++|+++
T Consensus 4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 4456778999999999999999999988887 566665 4578999999999973 38899999999998653
Q ss_pred -------cc--cCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCC--------------CCCcHHHHHHHcCCHHH
Q 010439 78 -------NA--YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND--------------DCHTALGVARIKGHINV 134 (510)
Q Consensus 78 -------n~--~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~--------------~g~TpL~~A~~~g~~~~ 134 (510)
+. .+.|..|+||||+|+..|+.++|++|+++|++++.++. .|.||||+|+..|+.++
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 22 22367899999999999999999999999999999987 79999999999999999
Q ss_pred HHHHHh---ccccccccccccCCCCHHHHHhhhcCC---------HHHHHHHhhCCCCCC-------CCCcccccccccc
Q 010439 135 VRAIES---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTANP-------SKPLRFELVIYPS 195 (510)
Q Consensus 135 v~~Ll~---~ga~~~~~~~d~~g~t~L~~~A~~~~~---------~~~~~~Ll~~ga~~~-------~~~~~~~~~l~~a 195 (510)
|++|++ +|++++ .+|..|.|||| +|+..++ .+++++|+++|++++ .++..+.++++.+
T Consensus 164 v~~Ll~~~~~gad~~--~~d~~g~tpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 164 VKFLLQNSWQPADIS--ARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHHHHCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHhcccCCCCce--eeCCCCCcHHH-HHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence 999999 899999 89999999999 8998888 799999999999986 4788999999999
Q ss_pred ccccChHHHHHHHHhhcC
Q 010439 196 LQDVQPRAVIALWKAKID 213 (510)
Q Consensus 196 ~~~~~~~~i~~l~~~~~~ 213 (510)
...++...+..|+.....
T Consensus 241 ~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 241 ASSGKIGVLAYILQREIH 258 (273)
T ss_dssp HHTTCHHHHHHHHHHHTC
T ss_pred HHhChHHHHHHHHHCCCC
Confidence 999998888877766653
No 53
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=1.2e-30 Score=260.11 Aligned_cols=226 Identities=19% Similarity=0.096 Sum_probs=192.0
Q ss_pred ccChhhhcC-CchHHHHHHHHcCCHHHHHHHHHcCCCC---------------------------------cccCCCCCh
Q 010439 7 SMNQHQQRQ-SKDELLYQWVIAGDVDAIRALRSQGASL---------------------------------EWMDKEGKT 52 (510)
Q Consensus 7 ~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---------------------------------~~~d~~g~T 52 (510)
++++|.++. .|.||||+|+..|+.++|++||++|+++ +..|..|.|
T Consensus 48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t 127 (337)
T 4g8k_A 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT 127 (337)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence 567777765 5999999999999999999999998764 456778999
Q ss_pred HHHHHHHhCCcHHHHHHHHHcCCCccccC--------CCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCCCCCCcHH
Q 010439 53 PLIVACMDSGLINVAKTLIELGANINAYR--------PGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTAL 123 (510)
Q Consensus 53 pL~~A~~~~~~~~~v~~Ll~~ga~~n~~~--------~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL 123 (510)
|||+|+.. |+.+++++|+++|++++..+ .+..|.||||+|+..|+.++|++||+ .|++++.+|..|.|+|
T Consensus 128 ~l~~A~~~-~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l 206 (337)
T 4g8k_A 128 AFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206 (337)
T ss_dssp HHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred HHHHHHHc-CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHH
Confidence 99999998 99999999999999998652 14468999999999999999999995 6999999999999999
Q ss_pred HHHHHcCC----HHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhC-CCCCCCCCccccccccccccc
Q 010439 124 GVARIKGH----INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQD 198 (510)
Q Consensus 124 ~~A~~~g~----~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~l~~a~~~ 198 (510)
|+++..+. ..++++|+++|++++ .+|..|.|||| +|+..++.+++++|+.. |++++.++..|.+|++.++..
T Consensus 207 ~~~~~~~~~~~~~~i~~lLl~~gad~n--~~d~~g~t~L~-~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~ 283 (337)
T 4g8k_A 207 IHALLSSDDSDVEAITHLLLDHGADVN--VRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 283 (337)
T ss_dssp HHHHHHSCTTTHHHHHHHHHHTTCCTT--CCCGGGCCHHH-HHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred HHHHHHcCcccHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence 99887654 468999999999999 89999999999 99999999999999975 899999999999999999999
Q ss_pred cChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCC-CChHHHHHH
Q 010439 199 VQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE-GDKHQLQWL 251 (510)
Q Consensus 199 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~-~~~~ql~~~ 251 (510)
++...+..|+.. |+++ +.+++|++|+.+. .+.++++.-
T Consensus 284 g~~~iv~~Ll~~--------GAd~-------n~~~~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 284 KLKKIAELLCKR--------GAST-------DCGDLVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp TCHHHHHHHHTT--------SCSS-------TTCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHC--------CCCC-------CCCCHHHHHHHcCCHHHHHHHHH
Confidence 998777765543 4452 2367999998543 344444433
No 54
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.6e-31 Score=255.70 Aligned_cols=169 Identities=18% Similarity=0.111 Sum_probs=156.9
Q ss_pred ccChhh----hcCCchHHHHHHHHc---CCHHHHHHHHHcCCCCccc-----------CCCCChHHHHHHHhCCcHHHHH
Q 010439 7 SMNQHQ----QRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAK 68 (510)
Q Consensus 7 ~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~-----------d~~g~TpL~~A~~~~~~~~~v~ 68 (510)
+.+++. +|..|.||||+|+.. |+.++|++|+++|++++.. |..|.||||+|+.. |+.++++
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~ 107 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVK 107 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc-CCHHHHH
Confidence 566666 799999999999999 9999999999999877633 36899999999998 9999999
Q ss_pred HHHHcCCCccccCCCCC-------------CChHHHHHHHcCCHHHHHHHHH---CCCCCccCCCCCCcHHHHHHH--cC
Q 010439 69 TLIELGANINAYRPGGR-------------GGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARI--KG 130 (510)
Q Consensus 69 ~Ll~~ga~~n~~~~d~~-------------g~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~TpL~~A~~--~g 130 (510)
+|+++|++++.. +.. |+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+. .+
T Consensus 108 ~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~ 185 (256)
T 2etb_A 108 LLVENGADVHLR--ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185 (256)
T ss_dssp HHHHTTCCTTCC--CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred HHHHcCCCCCcc--cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccC
Confidence 999999999998 554 9999999999999999999999 999999999999999999999 88
Q ss_pred CHH-------HHHHHHhccccc-------cccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCC
Q 010439 131 HIN-------VVRAIESHICYF-------CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN 181 (510)
Q Consensus 131 ~~~-------~v~~Ll~~ga~~-------~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~ 181 (510)
+.+ ++++|+++|+++ + .+|..|.|||| +|+..++.+++++|+++|++.
T Consensus 186 ~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 186 SPENSALVIHMYDGLLQMGARLCPTVQLEE--ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTCCGGG--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHcCCCccccccccc--ccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCC
Confidence 888 999999999999 7 89999999999 999999999999999998654
No 55
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=245.52 Aligned_cols=199 Identities=19% Similarity=0.210 Sum_probs=185.1
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~ 85 (510)
+.+.+.++..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+.. |+.+++++|+++|++++.. +..
T Consensus 32 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~ 108 (240)
T 3eu9_A 32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADPSLI--DGE 108 (240)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc-CCHHHHHHHHHcCCCCccc--CCC
Confidence 46778889999999999999999999999999999988655 4599999999998 9999999999999999998 899
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCC-HHHHHHHHhcccccccccccc-CCCCHHHHHhh
Q 010439 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESHICYFCGWLREF-YGPSFLEALAP 163 (510)
Q Consensus 86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~-~~~v~~Ll~~ga~~~~~~~d~-~g~t~L~~~A~ 163 (510)
|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++ .+++++|++.|++++ ..+. .|.|||| +|+
T Consensus 109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~--~~~~~~g~t~L~-~A~ 185 (240)
T 3eu9_A 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALH-WAV 185 (240)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT--CCCTTTCCCHHH-HHH
T ss_pred CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc--hhhccCCCcHHH-HHH
Confidence 9999999999999999999999999999999999999999997776 899999999999999 7776 8999999 999
Q ss_pred hcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhh
Q 010439 164 QLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK 211 (510)
Q Consensus 164 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~ 211 (510)
..++.+++++|+++|++++.++..+.++++.+.+.++...+..+....
T Consensus 186 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 186 LAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988887665443
No 56
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=4.2e-31 Score=255.39 Aligned_cols=170 Identities=18% Similarity=0.138 Sum_probs=151.3
Q ss_pred hhcCCchHHHHHHHHc---CCHHHHHHHHHcCCCC-------cc----cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCc
Q 010439 12 QQRQSKDELLYQWVIA---GDVDAIRALRSQGASL-------EW----MDKEGKTPLIVACMDSGLINVAKTLIELGANI 77 (510)
Q Consensus 12 ~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-------~~----~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~ 77 (510)
.++..|.||||+|+.. |+.++|++||++|+++ +. .|..|.||||+|+.. |+.+++++|+++|+++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~ga~~ 127 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RNMTLVTLLVENGADV 127 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCT
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc-CCHHHHHHHHHCCCCc
Confidence 3478999999999987 9999999999998653 22 567899999999998 9999999999999999
Q ss_pred cccCCCC--------------CCChHHHHHHHcCCHHHHHHHHH---CCCCCccCCCCCCcHHHHHHHcCC---------
Q 010439 78 NAYRPGG--------------RGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH--------- 131 (510)
Q Consensus 78 n~~~~d~--------------~g~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~TpL~~A~~~g~--------- 131 (510)
+.. +. .|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..|+
T Consensus 128 ~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 205 (273)
T 2pnn_A 128 QAA--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205 (273)
T ss_dssp TCC--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH
T ss_pred Ccc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH
Confidence 998 54 79999999999999999999999 999999999999999999999998
Q ss_pred HHHHHHHHhccccccc-----cccccCCCCHHHHHhhhcCCHHHHHHHhhCCC-CCCCCC
Q 010439 132 INVVRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGT-ANPSKP 185 (510)
Q Consensus 132 ~~~v~~Ll~~ga~~~~-----~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga-~~~~~~ 185 (510)
.+++++|+++|++++. ..+|..|.|||| +|+..++.+++++|+++|+ |+...+
T Consensus 206 ~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~dp~~~~ 264 (273)
T 2pnn_A 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLA-LAASSGKIGVLAYILQREIHEPECRH 264 (273)
T ss_dssp HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHhhhhcccccccccccCCCCCCHHH-HHHHhChHHHHHHHHHCCCCCchhhh
Confidence 8999999999999962 148999999999 9999999999999999999 554433
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=253.07 Aligned_cols=163 Identities=21% Similarity=0.262 Sum_probs=154.0
Q ss_pred hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHH-----HhCCcHHHHHHHHHcCCCccccCCC
Q 010439 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVAC-----MDSGLINVAKTLIELGANINAYRPG 83 (510)
Q Consensus 10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~-----~~~~~~~~v~~Ll~~ga~~n~~~~d 83 (510)
+|.+|.+|.||||+|+..|+.++|++||++|+ +++..|..|.||||+|+ .. ++.+++++|++.|++++.. +
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~--~ 180 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKA--S 180 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCC--T
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCcccc--C
Confidence 67789999999999999999999999999998 99999999999999999 55 7899999999999998887 8
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHh-ccccccccccccCCCCHHHHHh
Q 010439 84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALA 162 (510)
Q Consensus 84 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~g~t~L~~~A 162 (510)
..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|++ .|++++ .+|..|.|||| +|
T Consensus 181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~-~A 257 (276)
T 4hbd_A 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALM-VA 257 (276)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHH-HH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHH-HH
Confidence 899999999999999999999999999999999999999999999999999999999 899999 89999999999 99
Q ss_pred hhcCCHHHHHHHhhCC
Q 010439 163 PQLMSRKIWVVVIPCG 178 (510)
Q Consensus 163 ~~~~~~~~~~~Ll~~g 178 (510)
+..++.+++++|++++
T Consensus 258 ~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 258 LDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHTCHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHhcc
Confidence 9999999999999875
No 58
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=9.1e-31 Score=254.88 Aligned_cols=189 Identities=14% Similarity=0.079 Sum_probs=169.0
Q ss_pred cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC-
Q 010439 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG- 86 (510)
Q Consensus 8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g- 86 (510)
++++.+ +|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. +..|
T Consensus 55 ~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~ 129 (285)
T 3kea_A 55 ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGW 129 (285)
T ss_dssp GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGC--SSSGG
T ss_pred CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCcc--CCCCC
Confidence 344444 599999999999999999999999999999999999999999998 9999999999999999998 8888
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCH-HHHHhhhc
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQL 165 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~-L~~~A~~~ 165 (510)
.||||+|+..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|| || +|+..
T Consensus 130 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~-~A~~~ 205 (285)
T 3kea_A 130 KTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDN 205 (285)
T ss_dssp GSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHH-HHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHH-HHHHc
Confidence 79999999999999999999999887322 289999999999999999999999999999 899999998 99 99999
Q ss_pred CCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhc
Q 010439 166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI 212 (510)
Q Consensus 166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~ 212 (510)
++.+++++|+++|++++.++. .+...++...+..++....
T Consensus 206 ~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 206 KDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp TCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCC
Confidence 999999999999999998873 3345667777766665443
No 59
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=5.3e-30 Score=225.80 Aligned_cols=154 Identities=27% Similarity=0.322 Sum_probs=147.3
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHH
Q 010439 16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~ 94 (510)
.|.|+||+|+..|+.++|++|+++ +.+++..|..|.||||+ +.. |+.+++++|+++|++++.+ |..|+||||+|+
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~ 76 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMF-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAA 76 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHc-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHH
Confidence 367999999999999999999998 34999999999999999 877 9999999999999999998 899999999999
Q ss_pred HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHH
Q 010439 95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 174 (510)
Q Consensus 95 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~L 174 (510)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++ .+|..|.|||| +|+..++.+++++|
T Consensus 77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~-~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLE-LALQRGAQDLVDIL 152 (156)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHH-HHHHSCCHHHHHHH
T ss_pred HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHH-HHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 9998 89999999999 99999999999999
Q ss_pred hhC
Q 010439 175 IPC 177 (510)
Q Consensus 175 l~~ 177 (510)
+++
T Consensus 153 l~~ 155 (156)
T 1bd8_A 153 QGH 155 (156)
T ss_dssp HTT
T ss_pred Hhh
Confidence 875
No 60
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=7.8e-31 Score=260.48 Aligned_cols=178 Identities=13% Similarity=0.079 Sum_probs=152.3
Q ss_pred ccChhh-hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCc---HHHHHHHHHcC-CCccccC
Q 010439 7 SMNQHQ-QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL---INVAKTLIELG-ANINAYR 81 (510)
Q Consensus 7 ~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~---~~~v~~Ll~~g-a~~n~~~ 81 (510)
+++++. +|..|.||||+|+..|+.++|++||++|++++.+|..|+||||+|+.. |+ .++++.|++++ ++++.+
T Consensus 120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~- 197 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYPCLILE- 197 (327)
T ss_dssp CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEE-
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh-cccccHHHHHHHHHhhhccccCC-
Confidence 467788 899999999999999999999999999999999999999999999997 77 68888888887 789988
Q ss_pred CCCCCChHHHHHHH----cCCHHHHHHHHHC--------------------CCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 010439 82 PGGRGGTPLHHAAK----RGLEPTVRLLLSC--------------------GANALVRNDDCHTALGVARIKGHINVVRA 137 (510)
Q Consensus 82 ~d~~g~TpLh~A~~----~g~~~~v~~Ll~~--------------------gad~~~~d~~g~TpL~~A~~~g~~~~v~~ 137 (510)
|..|+||||+|+. .|+.+++++|++. |++++.++..|.||||+|+. +++
T Consensus 198 -d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~ 270 (327)
T 1sw6_A 198 -DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKW 270 (327)
T ss_dssp -CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHH
T ss_pred -CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHH
Confidence 8999999999999 8999999999987 89999999999999999985 889
Q ss_pred HHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccc
Q 010439 138 IESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD 198 (510)
Q Consensus 138 Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~ 198 (510)
|+++ +++ .+|..|+|||| +|+..++.+++++|+++|++++.++..+.+|++.+++.
T Consensus 271 Ll~~--~~n--~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 271 IIAN--MLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp HHHH--TTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred HHHh--CCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 9988 577 78999999999 99999999999999999999999999999999998764
No 61
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=8e-31 Score=251.37 Aligned_cols=193 Identities=16% Similarity=0.119 Sum_probs=151.9
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHH----HcCCCCcccC----CCCChHHHHHH---HhCCcHHHHHHHHHcCCCc-----
Q 010439 14 RQSKDELLYQWVIAGDVDAIRALR----SQGASLEWMD----KEGKTPLIVAC---MDSGLINVAKTLIELGANI----- 77 (510)
Q Consensus 14 ~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~d----~~g~TpL~~A~---~~~~~~~~v~~Ll~~ga~~----- 77 (510)
+..|+|+||.|++.|+.+.|+.|+ ++|++++..+ ..|.||||+|+ .. |+.+++++|++.|+++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchHh
Confidence 456788888888888888544444 4888887665 66888888888 44 8888888888887542
Q ss_pred ----cccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCC--------------CCCCcHHHHHHHcCCHHHHHHHH
Q 010439 78 ----NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIE 139 (510)
Q Consensus 78 ----n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d--------------~~g~TpL~~A~~~g~~~~v~~Ll 139 (510)
+..+.|..|+||||+|+..|+.++|++|+++|++++.++ ..|.||||+|+..|+.++|++|+
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 222225578888888888888888888888888888888 57888888888888888888888
Q ss_pred h---ccccccccccccCCCCHHHHHhhhcCC---------HHHHHHHhhCCCCC-------CCCCccccccccccccccC
Q 010439 140 S---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQ 200 (510)
Q Consensus 140 ~---~ga~~~~~~~d~~g~t~L~~~A~~~~~---------~~~~~~Ll~~ga~~-------~~~~~~~~~~l~~a~~~~~ 200 (510)
+ +|++++ .+|..|.|||| +|+..++ .+++++|+++|+++ +.++..+.+|++.++..++
T Consensus 161 ~~~~~ga~~~--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 161 ENGHKQADLR--RQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred hccccCCCCc--ccCCCCCcHHH-HHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 8 888888 78888888888 7887666 68888888888887 5678888888888888888
Q ss_pred hHHHHHHHHh
Q 010439 201 PRAVIALWKA 210 (510)
Q Consensus 201 ~~~i~~l~~~ 210 (510)
...+..|+..
T Consensus 238 ~~~v~~Ll~~ 247 (260)
T 3jxi_A 238 IGIFQHIIRR 247 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766543
No 62
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.8e-30 Score=248.89 Aligned_cols=163 Identities=20% Similarity=0.119 Sum_probs=149.8
Q ss_pred CCchHHHHHHH---HcCCHHHHHHHHHcCCC-----------CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCcccc
Q 010439 15 QSKDELLYQWV---IAGDVDAIRALRSQGAS-----------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80 (510)
Q Consensus 15 ~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~-----------~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~ 80 (510)
..|.||||+|+ ..|+.++|++|++.|++ ++..|..|+||||+|+.. |+.+++++|+++|++++..
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~ 122 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHAQ 122 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT-TCHHHHHHHHHTTCCTTCC
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc-CCHHHHHHHHhCCCCcCcc
Confidence 77999999999 67999999999998744 445566899999999998 9999999999999999998
Q ss_pred CCC--------------CCCChHHHHHHHcCCHHHHHHHHH---CCCCCccCCCCCCcHHHHHHHcCC---------HHH
Q 010439 81 RPG--------------GRGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------INV 134 (510)
Q Consensus 81 ~~d--------------~~g~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~TpL~~A~~~g~---------~~~ 134 (510)
+ ..|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..++ .++
T Consensus 123 --~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~ 200 (260)
T 3jxi_A 123 --ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200 (260)
T ss_dssp --CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred --ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence 5 689999999999999999999999 999999999999999999999888 799
Q ss_pred HHHHHhccccccc-----cccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCC
Q 010439 135 VRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN 181 (510)
Q Consensus 135 v~~Ll~~ga~~~~-----~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~ 181 (510)
+++|+++|++++. +.+|..|.|||| +|+..|+.+++++|+++|++.
T Consensus 201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccccccchhhcccCCCCCHHH-HHHHcCCHHHHHHHHHhCCCc
Confidence 9999999999931 179999999999 999999999999999998754
No 63
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.6e-30 Score=242.32 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=139.7
Q ss_pred HHHHHHcCCCCcccC---CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 010439 33 IRALRSQGASLEWMD---KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109 (510)
Q Consensus 33 v~~Ll~~g~~~~~~d---~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 109 (510)
|+.||++|++++..+ ..|.||||+|+.. |+.+++++|++.|++++.+ |..|+||||+|+..|+.+++++|+++|
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALT-GELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHH-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHc-CCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 466777777765543 4566778888887 7888888888888888877 778888888888888888888888888
Q ss_pred CCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccc-cCCCCHHHHHh--hhcCCHHHHHHHhhCCCCCCCCCc
Q 010439 110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCGTANPSKPL 186 (510)
Q Consensus 110 ad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~t~L~~~A--~~~~~~~~~~~Ll~~ga~~~~~~~ 186 (510)
++++.+|..|+||||+|+..|+.+++++|+++|++++ .++ ..|.|||| +| +..++.+++++|+++|++++.++.
T Consensus 78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~-~A~a~~~~~~~~v~~Ll~~ga~~~~~~~ 154 (229)
T 2vge_A 78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATAFE-KCDPYREGYADCATYLADVEQSMGLMNS 154 (229)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCSSTTCCTGG-GCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHhcChHHHHHHHHHcCCCcccccC
Confidence 8888888888888888888888888888888888887 554 57888888 77 778888888888888888887777
Q ss_pred cccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439 187 RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (510)
Q Consensus 187 ~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~ 241 (510)
.+.++++....... .+.+...+.+..++..|..|.|||++|+..
T Consensus 155 ~~~~~l~~~~~~~~-----------~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~ 198 (229)
T 2vge_A 155 GAVYALWDYSAEFG-----------DELSFREGESVTVLRRDGPEETDWWWAALH 198 (229)
T ss_dssp GEEEESSCBCCSST-----------TBCCBCTTCEEEEEESSCTTCSSEEEEEET
T ss_pred CchHHHHHHhhccc-----------cccCccccccccccccCCCcccHHHHHHHc
Confidence 77777765544332 134455566666788899999999999843
No 64
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=1.4e-30 Score=246.81 Aligned_cols=172 Identities=12% Similarity=0.031 Sum_probs=127.7
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (510)
Q Consensus 14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A 93 (510)
+..|.||||.|+..|+.++++.||++|++++.. ..|.||||+|+.. |+.+++++|+++|+++|.+ |..|+||||+|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A 77 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNA 77 (239)
T ss_dssp ------------------------------------CHHHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence 457999999999999999999999999999864 7899999999998 9999999999999999998 89999999999
Q ss_pred HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCC-CHHHHHh--hhcCCHHH
Q 010439 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP-SFLEALA--PQLMSRKI 170 (510)
Q Consensus 94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~-t~L~~~A--~~~~~~~~ 170 (510)
+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .++..|. |||| +| +..++.++
T Consensus 78 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~-~a~~~~~g~~~~ 154 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQC 154 (239)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHH-HHHHhhhccHHH
Confidence 99999999999999999999999999999999999999999999999999999 8888777 9999 88 78899999
Q ss_pred HHHHhhCCCCCCCCCccccccc
Q 010439 171 WVVVIPCGTANPSKPLRFELVI 192 (510)
Q Consensus 171 ~~~Ll~~ga~~~~~~~~~~~~l 192 (510)
+++|+++|++++..+..+..++
T Consensus 155 ~~~Ll~~~a~~~~~~~~~~~al 176 (239)
T 1ycs_B 155 SQFLYGVQEKMGIMNKGVIYAL 176 (239)
T ss_dssp HHHHHHHHHHTTTTGGGEEEES
T ss_pred HHHHHHhhhcccccccceEEEE
Confidence 9999999999987754443443
No 65
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.1e-31 Score=252.79 Aligned_cols=186 Identities=19% Similarity=0.079 Sum_probs=169.4
Q ss_pred hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHH
Q 010439 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90 (510)
Q Consensus 11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpL 90 (510)
+..+.+|.|+||+|+..|+.++|++|+++|+++|.+|..|+||||+|+.. |+.+++++|+++|+++|.+ |..|+|||
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~n~~--d~~g~tpL 91 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSP--DSHGWTPL 91 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCHH
Confidence 45577899999999999999999999999999999999999999999998 9999999999999999998 88999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCccCC-CCCCcHHHHH--HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCC
Q 010439 91 HHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVA--RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 167 (510)
Q Consensus 91 h~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A--~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~ 167 (510)
|+|+..|+.+++++|+++|++++.++ ..|+||||+| +..|+.+++++|+++|++++ .+|..|.|+++ .++...
T Consensus 92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~~l~-~~~~~~- 167 (229)
T 2vge_A 92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG--LMNSGAVYALW-DYSAEF- 167 (229)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT--TSGGGEEEESS-CBCCSS-
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc--cccCCchHHHH-HHhhcc-
Confidence 99999999999999999999999997 6999999999 99999999999999999999 89999999999 444433
Q ss_pred HHHHHHHhhCCCC--CCCCCccccccccccccccChHHHH
Q 010439 168 RKIWVVVIPCGTA--NPSKPLRFELVIYPSLQDVQPRAVI 205 (510)
Q Consensus 168 ~~~~~~Ll~~ga~--~~~~~~~~~~~l~~a~~~~~~~~i~ 205 (510)
..++|++.|++ ++.++..|.++++++...++...+.
T Consensus 168 --~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 168 --GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp --TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred --ccccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence 33688899998 6788889999999999888754443
No 66
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.96 E-value=1e-28 Score=241.53 Aligned_cols=165 Identities=24% Similarity=0.315 Sum_probs=149.5
Q ss_pred ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCC----
Q 010439 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---- 82 (510)
Q Consensus 7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~---- 82 (510)
+.+++.++.+|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. |+.+++++|+++|++++..+.
T Consensus 63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~g~t 141 (299)
T 1s70_B 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNSEGDT 141 (299)
T ss_dssp CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCcCCCCCC
Confidence 567788899999999999999999999999999999999999999999999998 999999999999999987621
Q ss_pred ------------------------------------------------------CCCCChHHHHHHHcCCHHHHHHHHHC
Q 010439 83 ------------------------------------------------------GGRGGTPLHHAAKRGLEPTVRLLLSC 108 (510)
Q Consensus 83 ------------------------------------------------------d~~g~TpLh~A~~~g~~~~v~~Ll~~ 108 (510)
+..|.||||+|+..|+.+++++|+++
T Consensus 142 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 221 (299)
T 1s70_B 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221 (299)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence 23578999999999999999999999
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439 109 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 175 (510)
Q Consensus 109 gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll 175 (510)
|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|.......+.+++-
T Consensus 222 g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~t~l~-~A~~~~~~~l~~l~~ 285 (299)
T 1s70_B 222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--AVNKVGQTAFD-VADEDILGYLEELQK 285 (299)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTTT-SCCSGGGHHHHHHHH
T ss_pred CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 89999999999 887654444444333
No 67
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=245.55 Aligned_cols=189 Identities=16% Similarity=0.134 Sum_probs=176.6
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CccccCCCCCCChHHH
Q 010439 15 QSKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPLH 91 (510)
Q Consensus 15 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga-~~n~~~~d~~g~TpLh 91 (510)
..+.+++|.|+..|+++.++.|++.+.+ +|.+|.+|+||||+|+.. |+.+++++|++.|+ +++.. |..|+||||
T Consensus 74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~~g~tpL~ 150 (276)
T 4hbd_A 74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH-ANFPVVQQLLDSGVCKVDKQ--NRAGYSPIM 150 (276)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTSCCCTTCC--CTTSCCHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC-CCHHHHHHHHHCCCCcCCCC--CCCCCCHHH
Confidence 3456788999999999999999998766 889999999999999998 99999999999998 99988 899999999
Q ss_pred HHH-----HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439 92 HAA-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 166 (510)
Q Consensus 92 ~A~-----~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~ 166 (510)
+|+ ..++.+++++|++.|.+++..+..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..+
T Consensus 151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh-~A~~~g 227 (276)
T 4hbd_A 151 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALM-CACEHG 227 (276)
T ss_dssp HGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHT
T ss_pred HHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHCC
Confidence 999 6689999999999999999999999999999999999999999999999999 89999999999 999999
Q ss_pred CHHHHHHHhh-CCCCCCCCCccccccccccccccChHHHHHHHH
Q 010439 167 SRKIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIALWK 209 (510)
Q Consensus 167 ~~~~~~~Ll~-~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~ 209 (510)
+.+++++|++ .|++++.++..+.+|++.+...++...+..|+.
T Consensus 228 ~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 271 (276)
T 4hbd_A 228 HKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271 (276)
T ss_dssp CHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 9999999999 899999999999999999999998887776553
No 68
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=4.2e-29 Score=220.37 Aligned_cols=143 Identities=25% Similarity=0.240 Sum_probs=120.4
Q ss_pred hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCCh-H
Q 010439 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT-P 89 (510)
Q Consensus 11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~T-p 89 (510)
...+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+ . |+.+++++|+++|++++.+ |..|+| |
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~--d~~g~ttp 81 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRP 81 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c-CCHHHHHHHHHcCCCCCCc--CCCCCcHH
Confidence 345788999999999999999999999999999999999999999985 5 9999999999999999998 889999 9
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHH
Q 010439 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE 159 (510)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~ 159 (510)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .++..|.||.+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~~~ 149 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--GSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC--ccCcCcCcccc
Confidence 999999999999999999999999999999999999999999999999999999999 89999999987
No 69
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=7.3e-29 Score=213.55 Aligned_cols=133 Identities=26% Similarity=0.309 Sum_probs=98.3
Q ss_pred cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC-C
Q 010439 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR-G 86 (510)
Q Consensus 8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~-g 86 (510)
.+++.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+. ++.+++++|+++|++++.+ |.. |
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~~g 78 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNCA--DPATL 78 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT--SCHHHHHHHHHHTCCSSCC--BTTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc--CCHHHHHHHHHCCCCCCCc--CCCCC
Confidence 4556667777777777777777777777777777777777777777777775 6677777777777777776 666 7
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc
Q 010439 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144 (510)
Q Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 144 (510)
+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7777777777777777777777777777777777777777777777777777777764
No 70
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=3.1e-29 Score=248.98 Aligned_cols=199 Identities=15% Similarity=-0.013 Sum_probs=164.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcC
Q 010439 19 ELLYQWVIAGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97 (510)
Q Consensus 19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g 97 (510)
+.+|+|+..+..+++++|++.|+++|. +|..|+||||+||.. |+.++|++||++|++++.+ |..|+||||+|+..|
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSV 175 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSS
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhc
Confidence 446888888889999999999999999 899999999999998 9999999999999999998 899999999999999
Q ss_pred C---HHHHHHHHHCC-CCCccCCCCCCcHHHHHHH----cCCHHHHHHHHhc--------------------cccccccc
Q 010439 98 L---EPTVRLLLSCG-ANALVRNDDCHTALGVARI----KGHINVVRAIESH--------------------ICYFCGWL 149 (510)
Q Consensus 98 ~---~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~~ 149 (510)
+ .++++.|++.+ ++++.+|..|+||||+|+. .|+.+++++|++. |++++ .
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~--~ 253 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN--D 253 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc--c
Confidence 8 78888888886 7899999999999999999 8999999999988 78888 8
Q ss_pred cccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecC
Q 010439 150 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ 229 (510)
Q Consensus 150 ~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~ 229 (510)
++..|.|||| +|+. +++|+++ +++.++..+.+|++.++..++...+..|+.. +++ +++.|.
T Consensus 254 ~~~~g~t~L~-~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--------Gad--~~~~d~ 314 (327)
T 1sw6_A 254 KNGERKDSIL-ENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDY--------GAD--PFIANK 314 (327)
T ss_dssp ------CHHH-HHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT--------TCC--TTCCCT
T ss_pred ccccCCChhH-HHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--------CCC--CcccCC
Confidence 9999999999 7775 8889988 5888899999999999999998777765543 456 778899
Q ss_pred CCcceeeehhcC
Q 010439 230 ATKIRYKFASAN 241 (510)
Q Consensus 230 ~~~t~l~~a~~~ 241 (510)
.|+|||++|+.+
T Consensus 315 ~G~TpL~~A~~~ 326 (327)
T 1sw6_A 315 SGLRPVDFGAGL 326 (327)
T ss_dssp TSCCGGGGTCC-
T ss_pred CCCCHHHHHHhc
Confidence 999999999753
No 71
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=4.7e-28 Score=217.02 Aligned_cols=143 Identities=25% Similarity=0.296 Sum_probs=132.2
Q ss_pred hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (510)
Q Consensus 10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp 89 (510)
.+.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.+ |..|+||
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~ 105 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIY--DWNGGTP 105 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence 567789999999999999999999999999999999999999999999998 9999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCH
Q 010439 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF 157 (510)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~ 157 (510)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++. .++..|.||
T Consensus 106 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~--~~~~~~~~p 171 (172)
T 3v30_A 106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF--QSNLVPADP 171 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS--CC-------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh--cccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999998 788888876
No 72
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=5.5e-28 Score=220.72 Aligned_cols=160 Identities=21% Similarity=0.151 Sum_probs=152.7
Q ss_pred CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcH
Q 010439 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTA 122 (510)
Q Consensus 43 ~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp 122 (510)
+|.+|..|+||||+|+.. |+.+++++|+++|++++.. |..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 28 ~n~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACML-GMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP 104 (192)
T ss_dssp HTCCCTTCCCHHHHHHHH-TCGGGHHHHHHHHCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HhCcCCCCCCHHHHHHHc-CCHHHHHHHHHhccccccc--cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 466899999999999998 9999999999999999988 8899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChH
Q 010439 123 LGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR 202 (510)
Q Consensus 123 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~ 202 (510)
||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.+|++.+...++..
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence 999999999999999999999999 89999999999 999999999999999999999999999999999999988877
Q ss_pred HHHHHH
Q 010439 203 AVIALW 208 (510)
Q Consensus 203 ~i~~l~ 208 (510)
.+..++
T Consensus 182 ~v~~Ll 187 (192)
T 2rfm_A 182 VIKIFT 187 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 73
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=3.8e-28 Score=209.01 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=129.9
Q ss_pred CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCC-
Q 010439 40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD- 118 (510)
Q Consensus 40 g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~- 118 (510)
+++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+. |+.+++++|+++|++++.+|..
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~ 77 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAAR-GQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT 77 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred CCCccCCCCCCccHHHHHHHc-CCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence 578999999999999999998 9999999999999999998 8999999999999 9999999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCC
Q 010439 119 CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180 (510)
Q Consensus 119 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~ 180 (510)
|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|+|
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVD-LAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHH-HHHHHTCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999 89999999999 99999999999999999985
No 74
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=5.3e-29 Score=226.32 Aligned_cols=161 Identities=15% Similarity=0.059 Sum_probs=144.0
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHhCCcH----HHHHHHHHcCCCccccCCCCCCChHH
Q 010439 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRPGGRGGTPL 90 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A~~~~~~~----~~v~~Ll~~ga~~n~~~~d~~g~TpL 90 (510)
.+.++||.|++.|+++.++.++..+. +.++ ..|+||||+|+.+ ++. +++++||++|+++|.+ |..|+|||
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~-~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpL 79 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRN-NNDEARYKISMFLINKGADIKSR--TKEGTTLF 79 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTC-SCHHHHHHHHHHHHHTTCCSSCC--CTTCCCTH
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHc-CCcchHHHHHHHHHHCCCCCCCC--CCCCCcHH
Confidence 35689999999999999999999875 4455 7899999999987 654 5999999999999998 89999999
Q ss_pred HHHHHcCC------HHHHHHHHHCCCCCccCCCCCC-cHHHHHHHcC-----CHHHHHHHHh-ccccccccccccCCCCH
Q 010439 91 HHAAKRGL------EPTVRLLLSCGANALVRNDDCH-TALGVARIKG-----HINVVRAIES-HICYFCGWLREFYGPSF 157 (510)
Q Consensus 91 h~A~~~g~------~~~v~~Ll~~gad~~~~d~~g~-TpL~~A~~~g-----~~~~v~~Ll~-~ga~~~~~~~d~~g~t~ 157 (510)
|+|+..++ .+++++|+++|+|++.+|..|+ ||||+|+..+ +.+++++|++ +|++++ .+|..|.||
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~Tp 157 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTA 157 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCH
Confidence 99999987 6889999999999999999999 9999999944 4679999999 999999 999999999
Q ss_pred HHHHhhhcCCHHHHHHHhhCCCCCCCC
Q 010439 158 LEALAPQLMSRKIWVVVIPCGTANPSK 184 (510)
Q Consensus 158 L~~~A~~~~~~~~~~~Ll~~ga~~~~~ 184 (510)
|| +|+..++.+++++|+++..+.+.+
T Consensus 158 L~-~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 158 LE-FVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HH-HHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred HH-HHHHcCCHHHHHHHHHHHHHHhcc
Confidence 99 999999999999999776544443
No 75
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.95 E-value=4.3e-27 Score=202.44 Aligned_cols=127 Identities=28% Similarity=0.360 Sum_probs=119.6
Q ss_pred hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (510)
Q Consensus 13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~ 92 (510)
....|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.. |..|+||||+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~ 86 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAV--DAIGFTPLHL 86 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHH
Confidence 356789999999999999999999999999999999999999999998 9999999999999999998 8899999999
Q ss_pred HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcc
Q 010439 93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142 (510)
Q Consensus 93 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g 142 (510)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999876
No 76
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=4.3e-27 Score=208.39 Aligned_cols=135 Identities=28% Similarity=0.348 Sum_probs=127.9
Q ss_pred cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439 6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85 (510)
Q Consensus 6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~ 85 (510)
.+.+.+.++..|.||||+|+. |+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..
T Consensus 27 ~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~ 102 (162)
T 1ihb_A 27 NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIE--DNE 102 (162)
T ss_dssp SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCC
Confidence 356778889999999999999 999999999999999999999999999999998 9999999999999999998 899
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc
Q 010439 86 GGTPLHHAAKRGLEPTVRLLLSCGAN-ALVRNDDCHTALGVARIKGHINVVRAIESHICY 144 (510)
Q Consensus 86 g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 144 (510)
|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 103 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999998 699999999999999999999999999999985
No 77
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=9.9e-27 Score=207.30 Aligned_cols=155 Identities=19% Similarity=0.087 Sum_probs=148.2
Q ss_pred CCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128 (510)
Q Consensus 49 ~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~ 128 (510)
.|.||||+|+.. |+.+++++|++.|++++.. |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHT-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHC-CCHHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 589999999998 9999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439 129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 208 (510)
Q Consensus 129 ~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~ 208 (510)
.|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+..+.
T Consensus 79 ~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVN--EYDWNGGTPLL-YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp HTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999 89999999999 999999999999999999999999999999999999998887776655
Q ss_pred H
Q 010439 209 K 209 (510)
Q Consensus 209 ~ 209 (510)
.
T Consensus 156 ~ 156 (167)
T 3v31_A 156 S 156 (167)
T ss_dssp H
T ss_pred H
Confidence 3
No 78
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=1.2e-26 Score=196.05 Aligned_cols=126 Identities=34% Similarity=0.514 Sum_probs=116.1
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~ 95 (510)
+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.+ |..|+||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCcHHHHHHH
Confidence 588999999999999999999999999999999999999999998 8899999999999999988 8889999999999
Q ss_pred cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc
Q 010439 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144 (510)
Q Consensus 96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 144 (510)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999875
No 79
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.6e-26 Score=206.55 Aligned_cols=155 Identities=23% Similarity=0.227 Sum_probs=146.2
Q ss_pred CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q 010439 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126 (510)
Q Consensus 47 d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A 126 (510)
...+.|+||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARA-GRDDEVRILMANGADVNAE--DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCcccchHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 45678999999998 9999999999999999988 88999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHH
Q 010439 127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA 206 (510)
Q Consensus 127 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~ 206 (510)
+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+..
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVN--ANDMEGHTPLH-LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence 99999999999999999999 89999999999 9999999999999999999999999999999999998888766654
Q ss_pred H
Q 010439 207 L 207 (510)
Q Consensus 207 l 207 (510)
+
T Consensus 165 L 165 (169)
T 2y1l_E 165 L 165 (169)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=6.3e-27 Score=206.37 Aligned_cols=144 Identities=19% Similarity=0.160 Sum_probs=121.0
Q ss_pred CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCc-
Q 010439 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT- 121 (510)
Q Consensus 43 ~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~T- 121 (510)
.+..+..|.||||+|+.. |+.+++++|+++|++++.. |..|+||||+|+ .|+.+++++|+++|++++.+|..|+|
T Consensus 5 ~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~tt 80 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTR 80 (156)
T ss_dssp -----CCSTTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCC
T ss_pred ccCCCccchHHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 345678899999999998 9999999999999999998 889999999985 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccccccc
Q 010439 122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193 (510)
Q Consensus 122 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~ 193 (510)
|||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++..
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSSCC---------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 9999999999999999999999999 89999999999 999999999999999999999998877766554
No 81
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=3.3e-26 Score=200.90 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=141.5
Q ss_pred CChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHc
Q 010439 50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129 (510)
Q Consensus 50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~ 129 (510)
..|+||+|+.. |+.+++++|+++|++++. +..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 2 ~~~~L~~A~~~-g~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARA-GQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHTCCCCC---CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHc-CCHHHHHHHHHcCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 46899999998 999999999999998873 78999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439 130 GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI 205 (510)
Q Consensus 130 g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~ 205 (510)
|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+.
T Consensus 78 ~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~ 150 (153)
T 1awc_B 78 GHANIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150 (153)
T ss_dssp TCHHHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999 89999999999 999999999999999999999999999999999999888866554
No 82
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=1.8e-25 Score=201.66 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=143.7
Q ss_pred CCCChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q 010439 48 KEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126 (510)
Q Consensus 48 ~~g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A 126 (510)
..+.++||.||.. |+.+++++|++. +.+++.. |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 3 ~~~~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCRE-GNAVAVRLWLDNTENDLNQG--DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHH-TCHHHHHHHHHCTTSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHhcCccccccc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 4578999999998 999999999998 6788887 89999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHH
Q 010439 127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA 206 (510)
Q Consensus 127 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~ 206 (510)
+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+........+..
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~ 156 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADIN--AVNEHGNVPLH-YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999 89999999999 9999999999999999999999999999999999988777655555
Q ss_pred HHHhh
Q 010439 207 LWKAK 211 (510)
Q Consensus 207 l~~~~ 211 (510)
+....
T Consensus 157 L~~~g 161 (179)
T 3f6q_A 157 AEKMG 161 (179)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 44433
No 83
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=1.2e-25 Score=199.91 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=140.1
Q ss_pred cCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHH
Q 010439 46 MDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG 124 (510)
Q Consensus 46 ~d~~g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~ 124 (510)
.|.+|.|+||+|+.. |+.++++.|++. +.+++.. +..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus 4 ~~~~~~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKA-GDVETVKKLCTVQSVNCRDI--EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHH-TCHHHHHHHCCTTTTTCCCT--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CcchhhHHHHHHHHh-CCHHHHHHHHHcCCCCcccc--ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence 467899999999998 999999999984 5566665 888999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHH
Q 010439 125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV 204 (510)
Q Consensus 125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i 204 (510)
+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+.+ ++...+
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~ 156 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAVVN--VADLWKFTPLH-EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQ 156 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHH
T ss_pred HHHHcCcHHHHHHHHhCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHH
Confidence 9999999999999999999999 89999999999 9999999999999999999999999999999999776 554443
Q ss_pred H
Q 010439 205 I 205 (510)
Q Consensus 205 ~ 205 (510)
.
T Consensus 157 ~ 157 (165)
T 3twr_A 157 D 157 (165)
T ss_dssp H
T ss_pred H
Confidence 3
No 84
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=1.5e-26 Score=219.08 Aligned_cols=148 Identities=21% Similarity=0.196 Sum_probs=134.7
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (510)
Q Consensus 14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A 93 (510)
+..|.|+||+|+..|+.++|++||++|+++|.+|..|.||||+|+.. |+.+++++|+++|+++|.+ |..|+||||+|
T Consensus 34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~tpL~~A 110 (239)
T 1ycs_B 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCA 110 (239)
T ss_dssp ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHH
T ss_pred CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence 46789999999999999999999999999999999999999999998 9999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHCCCCCccCCCCCC-cHHHHH--HHcCCHHHHHHHHhcccccccccc---------ccCCCCHHHHH
Q 010439 94 AKRGLEPTVRLLLSCGANALVRNDDCH-TALGVA--RIKGHINVVRAIESHICYFCGWLR---------EFYGPSFLEAL 161 (510)
Q Consensus 94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~-TpL~~A--~~~g~~~~v~~Ll~~ga~~~~~~~---------d~~g~t~L~~~ 161 (510)
+..|+.+++++|+++|++++.++..|. ||||+| +..|+.+++++|+++|++++ .. +..+.++++ +
T Consensus 111 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~--~~~~~~~~al~d~~~~~~~e-L 187 (239)
T 1ycs_B 111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGVIYALWDYEPQNDDE-L 187 (239)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT--TTGGGEEEESSCBCCSSTTB-C
T ss_pred HHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc--ccccceEEEEeccCCCCCCc-c
Confidence 999999999999999999999998887 999999 78899999999999999887 44 556777777 6
Q ss_pred hhhcCC
Q 010439 162 APQLMS 167 (510)
Q Consensus 162 A~~~~~ 167 (510)
+...|.
T Consensus 188 a~~~G~ 193 (239)
T 1ycs_B 188 PMKEGD 193 (239)
T ss_dssp CBCSSC
T ss_pred cccCCC
Confidence 666554
No 85
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=7e-27 Score=201.25 Aligned_cols=123 Identities=29% Similarity=0.347 Sum_probs=59.6
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (510)
Q Consensus 14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A 93 (510)
|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A 83 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTT--GYQNDSPLHDA 83 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CGGGCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCcccCc--CCCCCCHHHHH
Confidence 44444555555554555555555544444444444444555554444 4444455444444444444 44444444444
Q ss_pred HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 010439 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139 (510)
Q Consensus 94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll 139 (510)
+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence 4444444444444444444444444444444444444444444443
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=2.5e-25 Score=187.76 Aligned_cols=126 Identities=32% Similarity=0.465 Sum_probs=122.6
Q ss_pred CCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128 (510)
Q Consensus 49 ~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~ 128 (510)
+|+||||+|+.. |+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence 589999999998 9999999999999999988 8899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCC
Q 010439 129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180 (510)
Q Consensus 129 ~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~ 180 (510)
.|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|+|
T Consensus 78 ~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999 89999999999 99999999999999999986
No 87
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=3.9e-26 Score=196.54 Aligned_cols=133 Identities=22% Similarity=0.263 Sum_probs=120.9
Q ss_pred CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCC
Q 010439 40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119 (510)
Q Consensus 40 g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 119 (510)
|+|+ .+|..|+||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 76 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIK-GDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred CCCC-CcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence 5677 7889999999999998 9999999999999999998 8999999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCC
Q 010439 120 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT 179 (510)
Q Consensus 120 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga 179 (510)
+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..+..+++++|.+.+.
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 77 DSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVD-YTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GCCCHHHHHHHSCC-----
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhhccHHHHHhhcccccc
Confidence 999999999999999999999999999 89999999999 9999999999887776654
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=1.7e-25 Score=192.38 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=120.6
Q ss_pred CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q 010439 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126 (510)
Q Consensus 47 d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A 126 (510)
...|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARA-GQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccccHHHHHHHHh-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 45689999999998 9999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCC
Q 010439 127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG 178 (510)
Q Consensus 127 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~g 178 (510)
+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVN--AQDKFGKTAFD-ISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999 89999999999 999999999999999876
No 89
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=1.4e-25 Score=203.29 Aligned_cols=143 Identities=21% Similarity=0.178 Sum_probs=131.8
Q ss_pred hhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHH
Q 010439 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91 (510)
Q Consensus 12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh 91 (510)
..+..|.||||+|+..|+.++|+.||+ |+++|.+|..|+||||+|+.. |+.+++++|+++|+++|.++ +..|+||||
T Consensus 39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~-~~~g~tpL~ 115 (183)
T 3deo_A 39 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSSCCHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHH
Confidence 446789999999999999999999999 999999999999999999998 99999999999999999882 388999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHH
Q 010439 92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171 (510)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~ 171 (510)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..+ ....+.++|+ +|+..++.+++
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~-------------------~~~~~~~~l~-~a~~~~~~~i~ 175 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-------------------KTTPKGNPMQ-FGRRIGLEKVI 175 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH-------------------HTCCCCSHHH-HHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc-------------------cCcccccHHH-HHHHcCHHHHH
Confidence 999999999999999999999999999999999998742 2245789999 99999999999
Q ss_pred HHHhhC
Q 010439 172 VVVIPC 177 (510)
Q Consensus 172 ~~Ll~~ 177 (510)
++|.++
T Consensus 176 ~~L~~~ 181 (183)
T 3deo_A 176 NVLEGQ 181 (183)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 999765
No 90
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.93 E-value=7.9e-26 Score=214.78 Aligned_cols=146 Identities=21% Similarity=0.181 Sum_probs=134.3
Q ss_pred hhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHH
Q 010439 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91 (510)
Q Consensus 12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh 91 (510)
..+.+|.||||+|+..|+.++|++||+ |+++|.+|..|+||||+|+.. |+.+++++|+++|+++|.++ +..|+||||
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~-~~~g~t~L~ 116 (244)
T 3ui2_A 40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSCCCHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHH
Confidence 345689999999999999999999999 999999999999999999998 99999999999999999982 388999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHH
Q 010439 92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171 (510)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~ 171 (510)
+|+..|+.+++++|+++|++++.+|..|.||||+|+.. .....+.|||| +|+..|+.+++
T Consensus 117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-------------------~~~~~~~~~l~-~a~~~g~~~iv 176 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-------------------LKTTPKGNPMQ-FGRRIGLEKVI 176 (244)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-------------------HTTCCCSSHHH-HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-------------------HhccCCCCHHH-HHHHcChHHHH
Confidence 99999999999999999999999999999999999862 23457899999 99999999999
Q ss_pred HHHhhCCCC
Q 010439 172 VVVIPCGTA 180 (510)
Q Consensus 172 ~~Ll~~ga~ 180 (510)
++|++++.+
T Consensus 177 ~~L~~~~~~ 185 (244)
T 3ui2_A 177 NVLEGQVFE 185 (244)
T ss_dssp HHHHHHHEE
T ss_pred HHHHHhccc
Confidence 999987654
No 91
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=1.7e-26 Score=209.72 Aligned_cols=134 Identities=20% Similarity=0.211 Sum_probs=121.9
Q ss_pred hhhhc-CCchHHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCChHHHHHHHhCCc------HHHHHHHHHcCCCcc
Q 010439 10 QHQQR-QSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGL------INVAKTLIELGANIN 78 (510)
Q Consensus 10 ~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~------~~~v~~Ll~~ga~~n 78 (510)
.+.++ ..|+||||+|+..|+. ++|++||++|+++|.+|..|+||||+|+.. ++ .+++++|+++|+++|
T Consensus 30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-GGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSS
T ss_pred cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCcchhhHHHHHHHHHHCCCCCC
Confidence 34445 7799999999999985 599999999999999999999999999998 65 689999999999999
Q ss_pred ccCCCCCCC-hHHHHHHHcC-----CHHHHHHHHH-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439 79 AYRPGGRGG-TPLHHAAKRG-----LEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146 (510)
Q Consensus 79 ~~~~d~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 146 (510)
.+ |..|+ ||||+|+..+ +.+++++|++ +|+|++.+|..|+||||+|+..|+.++|++|+++..+++
T Consensus 109 ~~--d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 109 AL--YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp SC--BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred cc--CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99 89999 9999999954 4579999999 999999999999999999999999999999999876665
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.92 E-value=4.9e-26 Score=212.79 Aligned_cols=138 Identities=25% Similarity=0.292 Sum_probs=107.3
Q ss_pred hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChH
Q 010439 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTP 89 (510)
Q Consensus 11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~Tp 89 (510)
+.++.+|.|+||+|+..|+.++|++||++|++++.+|..|+||||+||.. |+.+++++|+++ |++++.+ |..|+||
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~g~~~~~~--d~~g~tp 143 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GHKDIVEMLFTQPNIELNQQ--NKLGDTA 143 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHTTSTTCCCCCC--CTTSCCH
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHcCCCCCcccc--CCCCCCH
Confidence 45567788888888888888888888888888888888888888888887 888888888888 8888887 8888888
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccC
Q 010439 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFY 153 (510)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~ 153 (510)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|++.++... .++..
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~--~~~~~ 205 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT--LSNAE 205 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh--ccchh
Confidence 888888888888888888888888888888888888888888888888888888766 44443
No 93
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=5e-25 Score=193.78 Aligned_cols=151 Identities=17% Similarity=0.077 Sum_probs=141.9
Q ss_pred CChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439 50 GKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128 (510)
Q Consensus 50 g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~ 128 (510)
|.||||+|+.. |+.+++++|++. +.+++.. |..|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 2 AGDRLSGAAAR-GDVQEVRRLLHRELVHPDAL--NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHTTCCCTTCC--CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchHHHHHHHh-CCHHHHHHHHHhhCcCcccc--CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 56999999998 999999999998 4488887 8899999999 99999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439 129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 208 (510)
Q Consensus 129 ~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~ 208 (510)
.|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++ ++++.++..+.++++.+...++...+..++
T Consensus 78 ~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGADVN--VPDGTGALPIH-LAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp TTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999 89999999999 99999999999999999 999999999999999999988877766543
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=2.4e-25 Score=187.90 Aligned_cols=113 Identities=28% Similarity=0.335 Sum_probs=99.8
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (510)
Q Consensus 14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A 93 (510)
+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. ++.+++++|+++|++++.+ |..|+||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHH
Confidence 45788999999999999999999999999999999999999999987 8899999999999999988 88899999999
Q ss_pred HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHc
Q 010439 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129 (510)
Q Consensus 94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~ 129 (510)
+..|+.+++++|+++|++++.+|..|+||||+|...
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence 999999999999999999999999999999998443
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=5.7e-25 Score=215.30 Aligned_cols=142 Identities=20% Similarity=0.165 Sum_probs=122.6
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCcc------cCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCccccCCCCCCC
Q 010439 16 SKDELLYQWVIAGDVDAIRALRSQGASLEW------MDKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPGGRGG 87 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~d~~g~TpL~~A~~~~--~~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (510)
.+.++||.|+..|+++.|+.|++.|++++. .|..|.||||+|+..+ ++.+++++||++|+++|.+ |..|+
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~--d~~G~ 227 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--AADGN 227 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC--CTTCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC--CCCCC
Confidence 356889999999999999999999999988 6889999999999852 7899999999999999998 88999
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCC
Q 010439 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 167 (510)
Q Consensus 88 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~ 167 (510)
||||+|+..|+.+++++||++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.|||| +|+.+|+
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh-~A~~~g~ 298 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLH-VDYSWVI 298 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhH-HHHhcCC
Confidence 999999999999999999999999999999999999999999999999999998865 4789999 8888776
Q ss_pred H
Q 010439 168 R 168 (510)
Q Consensus 168 ~ 168 (510)
.
T Consensus 299 ~ 299 (301)
T 2b0o_E 299 S 299 (301)
T ss_dssp -
T ss_pred c
Confidence 3
No 96
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=1.8e-26 Score=232.17 Aligned_cols=159 Identities=14% Similarity=0.038 Sum_probs=136.3
Q ss_pred hhcCCchHHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCc---cccCCCCC
Q 010439 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIELGANI---NAYRPGGR 85 (510)
Q Consensus 12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~---n~~~~d~~ 85 (510)
.++.++.||||+|+..|+.++|++|+++|+.. +..|..|.||||+||.+ |+.++|++|+++|+++ +.. +..
T Consensus 87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~--~~~ 163 (376)
T 2aja_A 87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQ--AEN 163 (376)
T ss_dssp HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHS--HHH
T ss_pred HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc-CCHHHHHHHHhCCCCccccccC--CCC
Confidence 35667889999999999999999999999722 23455789999999998 9999999999999863 332 222
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCcc--CCCCCCcHHHHHH-HcCCHHHHHHHHhccccccccccccCCCCHHHHHh
Q 010439 86 GGTPLHHAAKRGLEPTVRLLLSCGANALV--RNDDCHTALGVAR-IKGHINVVRAIESHICYFCGWLREFYGPSFLEALA 162 (510)
Q Consensus 86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~--~d~~g~TpL~~A~-~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A 162 (510)
+||||+|+..|+.++|++|+++|++++. .|..|.||||+|+ ..|+.++|++|+++|++ |.|||| +|
T Consensus 164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---------~~taL~-~A 232 (376)
T 2aja_A 164 -YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---------LAYAEI-HE 232 (376)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---------HHHHHH-CT
T ss_pred -CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---------cchHHH-HH
Confidence 9999999999999999999999999887 8889999999999 99999999999997742 679999 99
Q ss_pred hhcCCHHHHHHHhhCCCCCCCC
Q 010439 163 PQLMSRKIWVVVIPCGTANPSK 184 (510)
Q Consensus 163 ~~~~~~~~~~~Ll~~ga~~~~~ 184 (510)
+..|+.+++++|+++|++++.+
T Consensus 233 a~~g~~evv~lL~~~ga~~~~~ 254 (376)
T 2aja_A 233 FEYGEKYVNPFIARHVNRLKEM 254 (376)
T ss_dssp TTTTTTTHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCcccccc
Confidence 9999999999999999877544
No 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.90 E-value=7.7e-24 Score=212.20 Aligned_cols=148 Identities=21% Similarity=0.297 Sum_probs=121.4
Q ss_pred hcCCchHHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439 13 QRQSKDELLYQWVIA-GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (510)
Q Consensus 13 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~d--~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp 89 (510)
.+..+.|+||+|+.. |++++|++||++|+++|..+ ..|.||||+|+.. |+.+++++||++|+++|.. |..|+||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~Gadvn~~--d~~G~Tp 271 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA-NSLLACEFLLQNGANVNQA--DSAGRGP 271 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence 345678999999999 99999999999999999998 8999999999997 9999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc-ccccccCCCCHHHHHhhh
Q 010439 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC-GWLREFYGPSFLEALAPQ 164 (510)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~d~~g~t~L~~~A~~ 164 (510)
||+|+..|+.+++++||++|++++.+|..|.||||+|+..|+.+++++|+..+.... ....+..+.|+++ ++..
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~-i~~~ 346 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD-IFRD 346 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999998874322 1145667888888 4443
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=5.4e-24 Score=179.53 Aligned_cols=113 Identities=22% Similarity=0.225 Sum_probs=105.8
Q ss_pred CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q 010439 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126 (510)
Q Consensus 47 d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A 126 (510)
+..|.||||+|+.. |+.+++++|++.|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 4 ~~~~~~~l~~A~~~-~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHc-CCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 46789999999998 9999999999999999998 88999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439 127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165 (510)
Q Consensus 127 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~ 165 (510)
+..|+.+++++|+++|++++ .+|..|.|||| +|...
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~ 116 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKT--VKGPDGLTAFE-ATDNQ 116 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HCCCH
T ss_pred HHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HhCCH
Confidence 99999999999999999999 89999999999 78443
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=1.5e-24 Score=202.66 Aligned_cols=134 Identities=17% Similarity=0.146 Sum_probs=117.2
Q ss_pred cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccCCCCCCcHHH
Q 010439 46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTALG 124 (510)
Q Consensus 46 ~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~TpL~ 124 (510)
.+..|.||||+||.. |+.+++++|++.|++++.+ |..|+||||+|+..|+.++|++|++. |++++.+|..|+||||
T Consensus 69 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 69 QAESIDNPLHEAAKR-GNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH 145 (222)
T ss_dssp HEEEESCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred ccccccccccccccc-CcHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence 456789999999998 9999999999999999998 88999999999999999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCC
Q 010439 125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP 185 (510)
Q Consensus 125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~ 185 (510)
+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..+..++++.|+..|++...++
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFD-MATNAACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHH-HCCSHHHHHHHC-------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHH-HhcchhHHHHHHHHhccchhhhccc
Confidence 9999999999999999999999 89999999999 9999999999999999999876555
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=1.9e-23 Score=218.98 Aligned_cols=127 Identities=21% Similarity=0.208 Sum_probs=118.6
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCccc------CCCCChHHHHHHH---hCCcHHHHHHHHHcCCCccccCCCCCCC
Q 010439 17 KDELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACM---DSGLINVAKTLIELGANINAYRPGGRGG 87 (510)
Q Consensus 17 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------d~~g~TpL~~A~~---~~~~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (510)
..+.||.|+..|+.+.|+.||++|+++|.. |..|.||||+||. . |+.+++++||++|+++|.+ |..|+
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~-g~~~~v~~Ll~~ga~vn~~--d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ-ASLPLVDFIIQNGGHLDAK--AADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCT-TTHHHHHHHHHHSCCTTCC--CSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhccc-ccHHHHHHHHHcCCCCCcc--CCCCC
Confidence 457899999999999999999999999987 8899999999976 6 8999999999999999998 89999
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146 (510)
Q Consensus 88 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 146 (510)
||||+|+..|+.++|++||++|+|++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=1.4e-22 Score=196.08 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=91.5
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439 18 DELLYQWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPGGRGGTP 89 (510)
Q Consensus 18 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~d~~g~TpL~~A~~~~--~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp 89 (510)
.++|+.|+..|+.+.++.+++.|++++ ..|..|.||||+|+..+ ++.+++++|+++|+++|.+ |..|+||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~--d~~g~Tp 208 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTA 208 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc--CCCCCCH
Confidence 467777777777777777777777633 33667777777777753 5677777777777777776 6777777
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc
Q 010439 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144 (510)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 144 (510)
||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7777777777777777777777777777777777777777777777777777664
No 102
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=3.1e-25 Score=201.00 Aligned_cols=115 Identities=27% Similarity=0.234 Sum_probs=108.4
Q ss_pred CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCC-CCCCcHHHH
Q 010439 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGV 125 (510)
Q Consensus 47 d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~ 125 (510)
+..|.||||+|+.. |+.+++++|++ |+++|.+ |..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+
T Consensus 41 ~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHTT-TSCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHc-CCHHHHHHHHh-cCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 56899999999998 99999999999 9999998 8999999999999999999999999999999998 899999999
Q ss_pred HHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCH
Q 010439 126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 168 (510)
Q Consensus 126 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~ 168 (510)
|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~ 156 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILKT 156 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHHHHT
T ss_pred HHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHH-HHHHhccC
Confidence 999999999999999999999 89999999999 88765433
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=196.28 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=124.5
Q ss_pred CChHHHHHHHhCCcHHHHHHHHHcCCCccc------cCCCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCccCCCCCC
Q 010439 50 GKTPLIVACMDSGLINVAKTLIELGANINA------YRPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCH 120 (510)
Q Consensus 50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~------~~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~ 120 (510)
+.++|+.|+.. |+.+.++.|++.|++++. . +..|+||||+|+.. |+.+++++||++|++++.+|..|+
T Consensus 151 ~~~~L~~A~~~-g~~~~v~~ll~~g~d~~~~~~~~~~--~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICN-RDLLSVLEAFANGQDFGQPLPGPDA--QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSCEECSSS--CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred hHHHHhhhhhc-cCHHHHHHHHhcCCcccccCCCccc--CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 34679999998 999999999999999997 4 78999999999997 899999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccC
Q 010439 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ 200 (510)
Q Consensus 121 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~ 200 (510)
||||+|+..|+.++|++|+++|++++ .+|.+|.|||| +|+..++.+++++|+++|++ .+.++++.++..++
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 99999999999999999999999999 99999999999 99999999999999999987 35788888876554
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=2.7e-22 Score=160.18 Aligned_cols=91 Identities=38% Similarity=0.558 Sum_probs=46.5
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHc
Q 010439 17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR 96 (510)
Q Consensus 17 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~ 96 (510)
|+||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARN 78 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHc
Confidence 44555555555555555555555555555555555555555544 4555555555555555544 44555555555555
Q ss_pred CCHHHHHHHHHCCC
Q 010439 97 GLEPTVRLLLSCGA 110 (510)
Q Consensus 97 g~~~~v~~Ll~~ga 110 (510)
|+.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 55555555555444
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=4.8e-22 Score=158.73 Aligned_cols=93 Identities=39% Similarity=0.608 Sum_probs=83.6
Q ss_pred CCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128 (510)
Q Consensus 49 ~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~ 128 (510)
+|+||||+|+.. |+.+++++|+++|+++|.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 1 ~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~n~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 488999999998 8899999999999999988 8899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcccc
Q 010439 129 KGHINVVRAIESHICY 144 (510)
Q Consensus 129 ~g~~~~v~~Ll~~ga~ 144 (510)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999998874
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=1.1e-21 Score=189.86 Aligned_cols=166 Identities=13% Similarity=-0.005 Sum_probs=140.7
Q ss_pred hhcCCchHHHHHHHHcCCHHHHHHHHHcCCC-----Ccc--------------------------cCCCCChHHHHHHHh
Q 010439 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGAS-----LEW--------------------------MDKEGKTPLIVACMD 60 (510)
Q Consensus 12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~--------------------------~d~~g~TpL~~A~~~ 60 (510)
..|.-+.+.|+++...|+..+.+++...-.. ++. .+....++|+.|+..
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 3477788999999999998776665432110 000 001124789999997
Q ss_pred CCcHHHHHHHHHcCCCcccc----CCCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHH
Q 010439 61 SGLINVAKTLIELGANINAY----RPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133 (510)
Q Consensus 61 ~~~~~~v~~Ll~~ga~~n~~----~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~ 133 (510)
++.+.++.|++.|++++.. ..|..|+||||+|+.. |+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 141 -~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~ 219 (278)
T 1dcq_A 141 -RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219 (278)
T ss_dssp -TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred -cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHH
Confidence 9999999999999995532 1267899999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCC
Q 010439 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN 181 (510)
Q Consensus 134 ~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~ 181 (510)
+|++|+++|++++ .+|.+|.|||| +|+..++.+++++|+++|++.
T Consensus 220 ~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 220 CLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCC--CccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999 99999999999 999999999999999999864
No 107
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.87 E-value=1.8e-23 Score=210.33 Aligned_cols=174 Identities=11% Similarity=0.034 Sum_probs=145.1
Q ss_pred CchHHHHHHHH-cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCcccc-CCCCCCChHHHHH
Q 010439 16 SKDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHA 93 (510)
Q Consensus 16 ~g~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~-~~d~~g~TpLh~A 93 (510)
.+.++|++|.. .++.++++.|+++|.+. .||||+|+.. |+.+++++|+++|+..... +.+..|.||||+|
T Consensus 64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~-G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A 135 (376)
T 2aja_A 64 RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAIT-GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 135 (376)
T ss_dssp HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHH-CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHc-CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH
Confidence 45678888887 58899999999988654 5999999998 9999999999999832111 1145688999999
Q ss_pred HHcCCHHHHHHHHHCCCCC---ccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccc--cccCCCCHHHHHhh-hcCC
Q 010439 94 AKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL--REFYGPSFLEALAP-QLMS 167 (510)
Q Consensus 94 ~~~g~~~~v~~Ll~~gad~---~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~--~d~~g~t~L~~~A~-~~~~ 167 (510)
+.+|+.++|++|+++|+|+ +..+.+ .||||+|+..|+.++|++|+++|++++ . +|..|.|||| +|+ ..|+
T Consensus 136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~--~~~~d~~g~TpL~-~Aa~~~G~ 211 (376)
T 2aja_A 136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFR-WAAVGRGH 211 (376)
T ss_dssp HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHH-HHHSTTCC
T ss_pred HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc--hhccCCCCCCHHH-HHHHHCCC
Confidence 9999999999999999862 333333 899999999999999999999999987 6 8889999999 999 9999
Q ss_pred HHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439 168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 208 (510)
Q Consensus 168 ~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~ 208 (510)
.+++++|+++|+ .+.++++.+...++...+..+.
T Consensus 212 ~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~ 245 (376)
T 2aja_A 212 HNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIA 245 (376)
T ss_dssp HHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHH
T ss_pred HHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHH
Confidence 999999999885 3789999999998887655544
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=1.7e-22 Score=168.07 Aligned_cols=106 Identities=30% Similarity=0.417 Sum_probs=55.5
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (510)
Q Consensus 14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A 93 (510)
|.+|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.+ |..|+||||+|
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~tpl~~A 82 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNAR--SKDGNTPEHLA 82 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTCC--CTTCCCTTHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCCHHHHH
Confidence 44555555555555555555555555555555555555555555544 5555555555555555544 44555555555
Q ss_pred HHcCCHHHHHHHHHCCCCCccCCCCCCcH
Q 010439 94 AKRGLEPTVRLLLSCGANALVRNDDCHTA 122 (510)
Q Consensus 94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp 122 (510)
+..|+.+++++|+++|++++.++..|.||
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 55555555555555555555555555444
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=1.7e-21 Score=204.15 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=119.2
Q ss_pred CChHHHHHHHhCCcHHHHHHHHHcCCCcccc----CCCCCCChHHHHHHH---cCCHHHHHHHHHCCCCCccCCCCCCcH
Q 010439 50 GKTPLIVACMDSGLINVAKTLIELGANINAY----RPGGRGGTPLHHAAK---RGLEPTVRLLLSCGANALVRNDDCHTA 122 (510)
Q Consensus 50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~----~~d~~g~TpLh~A~~---~g~~~~v~~Ll~~gad~~~~d~~g~Tp 122 (510)
..+.||.|+.. |+.++++.||+.|+++|.. +.|..|+||||+|+. .|+.++|++||++|+|++.+|..|+||
T Consensus 132 ~~~~L~~A~~~-g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICN-RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHH-TCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred cHHHHHHHHhc-cCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence 44789999998 9999999999999999865 226789999999976 899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccc
Q 010439 123 LGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFEL 190 (510)
Q Consensus 123 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~ 190 (510)
||+|+..|+.++|++|+++|++++ .+|.+|.|||| +|+..++.+++++|+++|++++..+.....
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~ga~~~~~~~h~~~ 275 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAGTFAFPLHVDY 275 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCS--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTCC-----------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhCCCCCCCcceeec
Confidence 999999999999999999999999 99999999999 999999999999999999999876654433
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=6e-22 Score=164.71 Aligned_cols=109 Identities=34% Similarity=0.499 Sum_probs=102.0
Q ss_pred ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHH
Q 010439 45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG 124 (510)
Q Consensus 45 ~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~ 124 (510)
.+|.+|+||||+|+.. |+.+++++|+++|++++.. |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus 4 ~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHH-TCHHHHHHHTTTTCCSSCC--CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 4788999999999998 9999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhccccccccccccCCCCHH
Q 010439 125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFL 158 (510)
Q Consensus 125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L 158 (510)
+|+..|+.+++++|+++|++++ .++..|.+|-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVN--ARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHH--HHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCCCCC--cCCccccccc
Confidence 9999999999999999999999 8888888874
No 111
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=4.8e-22 Score=188.60 Aligned_cols=167 Identities=20% Similarity=0.088 Sum_probs=138.4
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (510)
Q Consensus 16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~ 95 (510)
.+.+++++++..|+.+.++.+...+.++ +..|.||||+|+.. |+.+++++|++ |+++|.+ |..|+||||+|+.
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~ 86 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAG 86 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHHTT-TCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHH
T ss_pred CCccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHHHc-CCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHH
Confidence 4556666666666666655555444333 45799999999997 99999999999 9999998 8999999999999
Q ss_pred cCCHHHHHHHHHCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHH
Q 010439 96 RGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 174 (510)
Q Consensus 96 ~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~L 174 (510)
.|+.++|++|+++|++++.++ ..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..+.
T Consensus 87 ~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~-~A~~~~~------- 156 (244)
T 3ui2_A 87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILK------- 156 (244)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHHT-------
T ss_pred CCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHH-HHHHHHh-------
Confidence 999999999999999999999 889999999999999999999999999999 89999999999 7765222
Q ss_pred hhCCCCCCCCCccccccccccccccChHHHHHHHH
Q 010439 175 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK 209 (510)
Q Consensus 175 l~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~ 209 (510)
. ..+.++++.+...++...+..+..
T Consensus 157 --~--------~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 157 --T--------TPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp --T--------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred --c--------cCCCCHHHHHHHcChHHHHHHHHH
Confidence 1 245778888887777666655543
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=3e-21 Score=193.42 Aligned_cols=132 Identities=19% Similarity=0.131 Sum_probs=121.1
Q ss_pred cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHH
Q 010439 46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125 (510)
Q Consensus 46 ~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~ 125 (510)
.+..+.|+||+|+...++.+++++||++|+++|..+.+..|+||||+|+..|+.+++++||++|++++.+|..|+||||+
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 33456789999997548899999999999999998333899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCC
Q 010439 126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180 (510)
Q Consensus 126 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~ 180 (510)
|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+..+..
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~-~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLG--ARDSEGRDPLT-IAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHC-
T ss_pred HHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence 999999999999999999999 99999999999 99999999999999987743
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=4.2e-19 Score=146.34 Aligned_cols=92 Identities=30% Similarity=0.414 Sum_probs=63.0
Q ss_pred hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHH
Q 010439 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90 (510)
Q Consensus 11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpL 90 (510)
...+.+|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+|||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~tpl 94 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQ--DKFGKTAF 94 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccCCCcHH
Confidence 34466677777777777777777777777777777777777777777765 6777777777777777766 66677777
Q ss_pred HHHHHcCCHHHHHHH
Q 010439 91 HHAAKRGLEPTVRLL 105 (510)
Q Consensus 91 h~A~~~g~~~~v~~L 105 (510)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 777777777777665
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.78 E-value=9.2e-19 Score=144.30 Aligned_cols=92 Identities=27% Similarity=0.389 Sum_probs=80.2
Q ss_pred cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHH
Q 010439 44 EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123 (510)
Q Consensus 44 ~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL 123 (510)
...|.+|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus 18 ~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~i~~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl 94 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARA-GQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94 (110)
T ss_dssp ----CCHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred cccCCccchHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH
Confidence 44677899999999988 8899999999999999988 88899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHH
Q 010439 124 GVARIKGHINVVRAI 138 (510)
Q Consensus 124 ~~A~~~g~~~~v~~L 138 (510)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999998877
No 115
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.50 E-value=8.9e-15 Score=106.57 Aligned_cols=56 Identities=27% Similarity=0.790 Sum_probs=50.6
Q ss_pred cccccccccccccceEEe--CCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439 455 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 510 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~ 510 (510)
....|.||++.+++++++ ||||.++|..|+.+++..+++||+||++|.++++||.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 346899999999999888 99999669999999997777899999999999999974
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.49 E-value=1e-14 Score=106.62 Aligned_cols=56 Identities=34% Similarity=0.823 Sum_probs=51.2
Q ss_pred cccccccccccccceEEe--CCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439 455 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 510 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~ 510 (510)
++..|.||++.+++++++ ||||.++|..|+.+|+..++.||+||++|.+++++|..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 446899999999999998 99999779999999998778899999999999999963
No 117
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1e-13 Score=102.33 Aligned_cols=53 Identities=28% Similarity=0.734 Sum_probs=47.2
Q ss_pred CCcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeee
Q 010439 453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 509 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~ 509 (510)
..+...|.||++.+++++++||||.++|..|+.++. +||+||++|..+++||.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence 445579999999999999999999955999999765 59999999999999985
No 118
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.25 E-value=1.5e-12 Score=99.27 Aligned_cols=51 Identities=33% Similarity=0.974 Sum_probs=46.2
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeee
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 509 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~ 509 (510)
+...|.||++.+.+++++||||.++|..|+..++ .||+||.+|..++++|.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEe
Confidence 3468999999999999999999955999999886 49999999999999985
No 119
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.19 E-value=4.3e-12 Score=95.66 Aligned_cols=52 Identities=29% Similarity=0.750 Sum_probs=46.0
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 510 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~ 510 (510)
+...|.||++.+.+++++||||..+|..|+..|. .||+||++|.+.+++|.+
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS----BCTTTCCBCSEEEECBC-
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc----cCCCcCcCccCcEEEeeC
Confidence 4468999999999999999999944999999884 599999999999999863
No 120
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.5e-11 Score=90.85 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=44.1
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
.+...|.||++.+.+++.+||||.| |..|+..|......||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 3456899999999999999999999 999999998877899999999864
No 121
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=5.7e-12 Score=95.34 Aligned_cols=52 Identities=29% Similarity=0.783 Sum_probs=45.7
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 510 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~ 510 (510)
+...|.||++.+.+++++||||.++|..|+.++. .||+||.+|...++||.+
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCS----BCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCC----CCccCCceecCcEEEecC
Confidence 3468999999999999999999933999998764 599999999999999863
No 122
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.9e-11 Score=90.21 Aligned_cols=53 Identities=23% Similarity=0.729 Sum_probs=46.5
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEee
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~ 508 (510)
.+...|.||++.+.+ +.+||||.| |..|+.+|......||+||.++.....+|
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 345789999999998 889999998 99999999887779999999998766655
No 123
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.9e-11 Score=91.29 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=44.9
Q ss_pred CCcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
..+...|.||++.+.+++.+||||.| |..|+..|......||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence 34557899999999999999999999 999999998877899999999864
No 124
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.8e-11 Score=88.67 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=45.6
Q ss_pred CCCcccccccccccccceEEe-CCCCccchHHhHHHHhccCCccccccccccce
Q 010439 452 DDGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 504 (510)
Q Consensus 452 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~ 504 (510)
+..+...|.||++.+.+++.+ +|||.| |..|+..|...+..||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence 345567999999999999987 999999 9999999987777999999998754
No 125
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.08 E-value=3.2e-11 Score=90.30 Aligned_cols=53 Identities=36% Similarity=0.803 Sum_probs=45.6
Q ss_pred cccccccccccccce-------EEeCCCCccchHHhHHHHhccCCcccccccccc--ceeEee
Q 010439 455 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY 508 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~i~ 508 (510)
+...|.||++...++ +.++|||.| |..|+..|...+..||+||.++. ++.++|
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 446899999998776 889999999 99999999888889999999986 455665
No 126
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.07 E-value=4.7e-11 Score=87.31 Aligned_cols=53 Identities=36% Similarity=0.789 Sum_probs=45.8
Q ss_pred cccccccccccccce-------EEeCCCCccchHHhHHHHhccCCcccccccccc--ceeEee
Q 010439 455 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY 508 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~i~ 508 (510)
+...|.||++...+. +.++|||.| |..|+.+|...+..||+||+++. +.+++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 346899999987765 888999999 99999999888889999999997 567776
No 127
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=6.9e-11 Score=87.86 Aligned_cols=49 Identities=37% Similarity=0.826 Sum_probs=42.7
Q ss_pred Ccccccccccccccce-------EEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
.+...|.||++.+.+. +.++|||.| |..|+..|...+..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 3457899999987765 889999999 999999998877899999998864
No 128
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.1e-10 Score=86.21 Aligned_cols=49 Identities=27% Similarity=0.739 Sum_probs=42.7
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhc---cCCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~Cp~Cr~~i~~ 503 (510)
.+...|.||++.+.+++.++|||.| |..|+..|.. ....||+||+++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3457999999999999999999999 9999999986 24489999998864
No 129
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.02 E-value=2.2e-10 Score=85.12 Aligned_cols=52 Identities=23% Similarity=0.638 Sum_probs=43.8
Q ss_pred CCcccccccccccc---cceEEeCCCCccchHHhHHHHhccCCcccccccccccee
Q 010439 453 DGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 505 (510)
Q Consensus 453 ~~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~ 505 (510)
......|.||++.. ..++.+||||.| |..|+..|...+..||+||..+...+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34557899998875 457789999999 99999999888889999999987654
No 130
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.02 E-value=8.9e-11 Score=86.99 Aligned_cols=52 Identities=27% Similarity=0.758 Sum_probs=45.5
Q ss_pred ccccccccccccce-EEeCCCCccchHHhHHHHhccCCccccccccccceeEee
Q 010439 456 SSSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508 (510)
Q Consensus 456 ~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~ 508 (510)
...|.||++...+. +.+||||.| |..|+.+|...+..||+||.++...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 36899999999884 888999999 99999999887789999999998776553
No 131
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.02 E-value=1.4e-10 Score=98.88 Aligned_cols=49 Identities=33% Similarity=0.775 Sum_probs=44.4
Q ss_pred ccccccccccccceEEeCCCCccchHHhHHHHhccCCcccccccccccee
Q 010439 456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 505 (510)
Q Consensus 456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~ 505 (510)
+..|+||++.+.+++.+||||.| |..|+..|...+..||+||.+|....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 35799999999999999999999 99999999988889999999997543
No 132
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.99 E-value=2.7e-10 Score=89.53 Aligned_cols=49 Identities=35% Similarity=0.719 Sum_probs=42.9
Q ss_pred Ccccccccccccccc---eEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 454 GSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
++...|.||++.+.. ++.+||||.| |..|+..|...+..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 455789999998776 7788999999 999999999888899999998864
No 133
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.7e-10 Score=83.80 Aligned_cols=49 Identities=22% Similarity=0.563 Sum_probs=42.8
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhc-cCCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~ 503 (510)
.+...|+||++...+++.++|||.| |..|+.+|.. ....||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3457899999999999999999999 9999999984 34589999998864
No 134
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=85.97 Aligned_cols=49 Identities=22% Similarity=0.613 Sum_probs=43.0
Q ss_pred CCcccccccccccccceEEeC-CCCccchHHhHHHHhccC--Ccccccccccc
Q 010439 453 DGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKIN 502 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~ 502 (510)
..+...|.||++.+.+++.+| |||.| |..|+..|...+ ..||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345579999999999999999 99999 999999998754 58999999754
No 135
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2e-10 Score=86.67 Aligned_cols=54 Identities=26% Similarity=0.501 Sum_probs=43.9
Q ss_pred CCccccccccccccc---ceEEeCCCCccchHHhHHHHhccCCccccccccccceeEe
Q 010439 453 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL 507 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i 507 (510)
......|.||++.+. ..+.+||||.| |..|+..|...+..||+||.++....++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCccccccccc
Confidence 344578999999864 34456999999 9999999998878999999999765543
No 136
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.97 E-value=2.2e-10 Score=80.91 Aligned_cols=46 Identities=33% Similarity=0.738 Sum_probs=40.8
Q ss_pred ccccccccccccc----eEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439 456 SSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502 (510)
Q Consensus 456 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 502 (510)
...|.||++...+ ++.++|||.| |..|+.+|......||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 4689999998755 8889999999 99999999887789999999875
No 137
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.96 E-value=2.8e-10 Score=86.79 Aligned_cols=49 Identities=31% Similarity=0.686 Sum_probs=41.3
Q ss_pred Cccccccccccccc---ceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 454 GSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
.+...|.||++.+. ..+.+||||.| |..|+.+|...+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence 44579999988764 44667999999 999999999877899999999865
No 138
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.95 E-value=4.8e-10 Score=88.45 Aligned_cols=50 Identities=22% Similarity=0.597 Sum_probs=43.0
Q ss_pred CCCcccccccccccccceEEeC-CCCccchHHhHHHHhccC--Ccccccccccc
Q 010439 452 DDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKIN 502 (510)
Q Consensus 452 ~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~ 502 (510)
+..+...|+||++.+.+++.+| |||.| |..|+..|.... ..||+||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3445679999999999999999 99999 999999997643 48999999873
No 139
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.94 E-value=2.9e-10 Score=80.24 Aligned_cols=47 Identities=23% Similarity=0.677 Sum_probs=40.8
Q ss_pred cccccccccccccc---eEEeC-CCCccchHHhHHHHhccCCcccccccccc
Q 010439 455 SSSSCVICWEAPVE---GACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502 (510)
Q Consensus 455 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 502 (510)
+...|.||++...+ ++.+| |||.| |..|+..|...+..||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 34689999999776 77787 99999 99999999988889999998763
No 140
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=6.5e-10 Score=86.87 Aligned_cols=49 Identities=31% Similarity=0.651 Sum_probs=42.6
Q ss_pred CCcccccccccccccc----eEEeCCCCccchHHhHHHHhccC---Ccccccccccc
Q 010439 453 DGSSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN 502 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~---~~Cp~Cr~~i~ 502 (510)
..+...|.||++.+.+ ++.++|||.| |..|+.+|.... ..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3445789999999988 9999999999 999999998765 58999999875
No 141
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.93 E-value=7e-10 Score=86.06 Aligned_cols=49 Identities=33% Similarity=0.704 Sum_probs=43.1
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhcc------CCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~Cp~Cr~~i~~ 503 (510)
.+...|.||++.+.+++.+||||.| |..|+..|... ...||+||.++..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456899999999999999999999 99999998876 4589999999863
No 142
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=3.4e-10 Score=85.55 Aligned_cols=48 Identities=23% Similarity=0.605 Sum_probs=41.3
Q ss_pred cccccccccccccce---EEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 455 SSSSCVICWEAPVEG---ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
+...|.||++.+... +.+||||.| |..|+..|...+..||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 446899999886554 788999999 999999998888899999998864
No 143
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.92 E-value=4.1e-10 Score=85.24 Aligned_cols=55 Identities=27% Similarity=0.655 Sum_probs=43.1
Q ss_pred CCcccccccccccc--cceEEeC--CCCccchHHhHHHHhcc-CCccccccccccceeEee
Q 010439 453 DGSSSSCVICWEAP--VEGACVP--CGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRLY 508 (510)
Q Consensus 453 ~~~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~~i~ 508 (510)
..++..|+||++.. .+++++| |||.| |..|+.+++.. ...||.||+++.....+|
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 34557899999976 4556666 99999 99999999854 458999999998654444
No 144
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.92 E-value=2.5e-10 Score=87.31 Aligned_cols=50 Identities=30% Similarity=0.693 Sum_probs=43.1
Q ss_pred CCcccccccccccccceEEeCCCCccchHHhHHHHhcc-------CCccccccccccc
Q 010439 453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-------KGDCPVCRTKINQ 503 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~Cp~Cr~~i~~ 503 (510)
..+...|.||++.+.+++.+||||.| |..|+.+|... ...||+||.++..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34557999999999999999999999 99999998775 4589999999853
No 145
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.90 E-value=9.6e-10 Score=83.77 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=43.4
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~ 503 (510)
+...|+||++.+.+++.++|||.| |..|+.+|... ...||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 457999999999999999999999 99999999986 5689999999863
No 146
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.8e-09 Score=78.52 Aligned_cols=43 Identities=28% Similarity=0.773 Sum_probs=38.0
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhcc---CCccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVC 497 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~Cp~C 497 (510)
.+...|+||++.+.+++.++|||.| |..|+.+|... +..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 4457899999999999999999999 99999999873 4489998
No 147
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=8.3e-10 Score=85.63 Aligned_cols=49 Identities=33% Similarity=0.777 Sum_probs=42.9
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhcc------CCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~Cp~Cr~~i~~ 503 (510)
.+...|.||++.+.+++.+||||.| |..|+..|... ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3457899999999999999999999 99999998765 5689999999863
No 148
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.86 E-value=7.3e-10 Score=88.73 Aligned_cols=47 Identities=26% Similarity=0.728 Sum_probs=42.8
Q ss_pred cccccccccccccceEE-eCCCCccchHHhHHHHhccC-Ccccccccccc
Q 010439 455 SSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKK-GDCPVCRTKIN 502 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~ 502 (510)
+...|+||++.+.+++. ++|||.| |..|+..|.... ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence 44689999999999999 9999999 999999998876 58999999985
No 149
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.2e-09 Score=79.92 Aligned_cols=47 Identities=28% Similarity=0.676 Sum_probs=38.3
Q ss_pred ccccccccc-cccce----EEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439 456 SSSCVICWE-APVEG----ACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 503 (510)
Q Consensus 456 ~~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~ 503 (510)
+..|+||++ ...++ +.++|||.| |..|+.+|... ...||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 368999999 55554 568999999 99999999554 3579999999963
No 150
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.1e-09 Score=76.71 Aligned_cols=43 Identities=33% Similarity=0.774 Sum_probs=37.3
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhc---cCCccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVC 497 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~Cp~C 497 (510)
.+...|.||++.+.+++.++|||.| |..|+.+|.. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 3457899999999999999999999 9999999954 34589998
No 151
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.81 E-value=1.5e-09 Score=90.67 Aligned_cols=48 Identities=25% Similarity=0.629 Sum_probs=42.5
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccc
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~ 503 (510)
+...|+||++.+.+++.+||||.| |..|+..|..... .||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346899999999999999999999 9999999987544 89999999865
No 152
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.8e-09 Score=86.37 Aligned_cols=48 Identities=25% Similarity=0.620 Sum_probs=43.4
Q ss_pred cccccccccccccceEEe-CCCCccchHHhHHHHhccCCccccccccccc
Q 010439 455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
+...|.||++.+.+++.+ +|||.| |..|+..|...+..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 446899999999999988 899999 999999999877899999998864
No 153
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.80 E-value=2.6e-09 Score=86.84 Aligned_cols=49 Identities=20% Similarity=0.636 Sum_probs=44.2
Q ss_pred CcccccccccccccceEEe-CCCCccchHHhHHHHhccCCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
.+...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 3457899999999999998 999999 999999998877899999999874
No 154
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=4.8e-10 Score=79.30 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=38.8
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 502 (510)
.+...|.||++.+.+++.+||||.| |..|+..+ ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcc-cHHHHccC---CCCCCcCCcEee
Confidence 3456899999999999999999999 99998763 347999999886
No 155
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=3.9e-09 Score=103.60 Aligned_cols=50 Identities=34% Similarity=0.792 Sum_probs=45.1
Q ss_pred cccccccccccceEEeCCCCccchHHhHHHHhc-cCCccccccccccceeEe
Q 010439 457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL 507 (510)
Q Consensus 457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~i 507 (510)
..|+||++...+++.+||||.| |..|+..|.. ....||+||+++.....+
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 5899999999999999999999 9999999987 466899999999876655
No 156
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.76 E-value=6.5e-09 Score=80.26 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=44.5
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
.++..|+||++...++|.++|||.| |..|+.+|+.....||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3557999999999999999999999 999999999877799999998864
No 157
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.75 E-value=1.7e-09 Score=89.05 Aligned_cols=49 Identities=35% Similarity=0.761 Sum_probs=42.9
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~ 503 (510)
.++..|.||++.+.+++.++|||.| |..|+..|... ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3457899999999999999999999 99999999865 4589999998853
No 158
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.74 E-value=1.6e-09 Score=105.83 Aligned_cols=51 Identities=29% Similarity=0.900 Sum_probs=45.5
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeee
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 509 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~ 509 (510)
++..|+||++.+.+++++||||.++|..|+..+. .||+||.+|...++||.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFL 344 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC-
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeec
Confidence 3468999999999999999999944999999884 59999999999999985
No 159
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.74 E-value=3.7e-09 Score=91.11 Aligned_cols=49 Identities=31% Similarity=0.602 Sum_probs=43.3
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccce
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQV 504 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~~ 504 (510)
+...|.||++.+.+++.+||||.| |..|+..|..... .||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 446899999999999999999999 9999999987654 799999998753
No 160
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.73 E-value=6.4e-09 Score=85.99 Aligned_cols=50 Identities=32% Similarity=0.616 Sum_probs=44.0
Q ss_pred CCcccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccc
Q 010439 453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ 503 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~ 503 (510)
..+...|+||++...+++.++|||.| |..|+..|..... .||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34557999999999999999999999 9999999987654 89999999865
No 161
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.72 E-value=1.5e-08 Score=80.30 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=44.4
Q ss_pred CcccccccccccccceEEeCCC-CccchHHhHHHHhccCCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
.++..|+||++.+.++|.++|| |.| |..|+.+|+.....||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3457999999999999999999 999 999999999877789999998864
No 162
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.72 E-value=9.4e-09 Score=81.84 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=44.6
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
.+...|+||++...++|.+||||.| |..|+.+|+.....||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence 4557999999999999999999999 999999999877799999998864
No 163
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=8.1e-09 Score=79.04 Aligned_cols=46 Identities=22% Similarity=0.545 Sum_probs=37.7
Q ss_pred ccccccccccccc--------------eEEe-CCCCccchHHhHHHHhccCCcccccccccc
Q 010439 456 SSSCVICWEAPVE--------------GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502 (510)
Q Consensus 456 ~~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 502 (510)
+..|.||++.+.+ ++.+ +|||.| |..|+.+|...+..||+||+++.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcc
Confidence 3568888887654 4444 599999 99999999988889999999875
No 164
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.70 E-value=6.3e-09 Score=85.54 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=38.0
Q ss_pred cccccccccccce------------------EEeCCCCccchHHhHHHHhc-----cCCccccccccccc
Q 010439 457 SSCVICWEAPVEG------------------ACVPCGHMAGCMSCLSEIKA-----KKGDCPVCRTKINQ 503 (510)
Q Consensus 457 ~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~-----~~~~Cp~Cr~~i~~ 503 (510)
..|+||++.+... +.++|||.| |..|+..|.. ....||+||+.+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 5899999987543 378999999 9999999983 34589999998754
No 165
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.69 E-value=5.6e-09 Score=91.89 Aligned_cols=48 Identities=27% Similarity=0.619 Sum_probs=42.7
Q ss_pred CcccccccccccccceEEe-CCCCccchHHhHHHHhcc-CCcccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN 502 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~ 502 (510)
.+...|+||++.+.+++.+ +|||.| |..|+..|... ...||+||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3456999999999999988 999999 99999999876 568999999985
No 166
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=4.2e-09 Score=86.33 Aligned_cols=47 Identities=30% Similarity=0.752 Sum_probs=41.6
Q ss_pred ccccccccccccceEEeCCCCccchHHhHHHHhccCC---ccccccccccc
Q 010439 456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG---DCPVCRTKINQ 503 (510)
Q Consensus 456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~---~Cp~Cr~~i~~ 503 (510)
...|+||++.+.+++.+||||.| |..|+..|..... .||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45899999999999999999999 9999999987543 79999998863
No 167
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.66 E-value=1e-08 Score=87.26 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=42.0
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKI 501 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i 501 (510)
.+...|+||++.+.+++.++|||.| |..|+..|..... .||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 4557999999999999999999999 9999999987554 899999975
No 168
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.63 E-value=1.2e-08 Score=84.14 Aligned_cols=48 Identities=27% Similarity=0.529 Sum_probs=43.1
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~ 503 (510)
+...|+||++.+.+++.++|||.| |..|+.+|... ...||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 446899999999999999999999 99999999876 5689999999864
No 169
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.63 E-value=1.5e-08 Score=85.75 Aligned_cols=48 Identities=38% Similarity=0.840 Sum_probs=42.9
Q ss_pred cccccccccccccce-------EEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 455 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
+...|.||++.+.++ +.++|||.| |..|+.+|...+..||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence 346899999998877 899999999 999999999888899999999863
No 170
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.57 E-value=2.1e-08 Score=84.71 Aligned_cols=53 Identities=36% Similarity=0.803 Sum_probs=45.9
Q ss_pred cccccccccccccce-------EEeCCCCccchHHhHHHHhccCCcccccccccc--ceeEee
Q 010439 455 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY 508 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~i~ 508 (510)
+...|.||++...+. +.++|||.| |..|+.+|...++.||+||.++. +.+++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 346899999987765 888999999 99999999988889999999996 466776
No 171
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.51 E-value=6.4e-08 Score=77.65 Aligned_cols=46 Identities=22% Similarity=0.474 Sum_probs=38.6
Q ss_pred ccccccccccccc------------------eEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439 456 SSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502 (510)
Q Consensus 456 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 502 (510)
...|.||++.+.. .+.++|+|.| |..|+..|...+..||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 3579999887553 4668999999 99999999988889999999853
No 172
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.47 E-value=1.7e-08 Score=83.31 Aligned_cols=45 Identities=31% Similarity=0.693 Sum_probs=40.6
Q ss_pred cccccccccccccceEEe-CCCCccchHHhHHHHhccCCcccccccccc
Q 010439 455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 502 (510)
+...|+||++.+.+++.+ +|||.| |..|+..|.. ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc--CCCcCCCCcCc
Confidence 446899999999999999 999999 9999999876 57999999885
No 173
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.38 E-value=1.4e-07 Score=83.35 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=43.8
Q ss_pred CCcccccccccccccceEEeCCCCccchHHhHHHHhccC-Cccccccccccc
Q 010439 453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ 503 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~ 503 (510)
..+...|+||++.+.+++.++|||.| |..|+.+|...+ ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 34567999999999999999999999 999999997654 489999999865
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.38 E-value=1.6e-07 Score=90.23 Aligned_cols=48 Identities=23% Similarity=0.188 Sum_probs=42.7
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccc
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~ 503 (510)
....|+||++.+.++|.+||||.| |..|+.+|+...+ .||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence 346899999999999999999999 9999999987644 59999999863
No 175
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=1.6e-07 Score=73.99 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=39.4
Q ss_pred cccccccccccccceEEeC-CCCccchHHhHHHHhccC------Ccccc--cccc
Q 010439 455 SSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK------GDCPV--CRTK 500 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~------~~Cp~--Cr~~ 500 (510)
+...|+||++.+.++|.++ |||.| |..|+..|+... ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4478999999999999996 99999 999999998753 38999 9865
No 176
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.33 E-value=2.8e-07 Score=80.86 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=42.9
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccc
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~ 503 (510)
+...|+||++...++|.+||||.| |..|+..|+...+ .||+||.++..
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 457999999999999999999999 9999999997644 69999998864
No 177
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.28 E-value=1.1e-07 Score=77.35 Aligned_cols=45 Identities=22% Similarity=0.492 Sum_probs=0.0
Q ss_pred cccccccccccc------------------eEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439 457 SSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502 (510)
Q Consensus 457 ~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 502 (510)
..|.||++.+.+ ++..+|+|.| |..|+..|...+..||+||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 589999988654 2335999999 99999999888789999999853
No 178
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=7.9e-07 Score=67.30 Aligned_cols=48 Identities=23% Similarity=0.500 Sum_probs=39.0
Q ss_pred cccccccccccc--cceEEeCCC-----CccchHHhHHHHhccC--Cccccccccccc
Q 010439 455 SSSSCVICWEAP--VEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~ 503 (510)
+...|.||++.. .+.+.+||. |.| +..|+.+|...+ ..||+||..+.-
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 346899999764 456678996 999 999999998764 489999998854
No 179
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.04 E-value=2.8e-06 Score=78.19 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=41.1
Q ss_pred cccccccccccccceEEe-CCCCccchHHhHHHHhccC--Ccccc--cccccc
Q 010439 455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPV--CRTKIN 502 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~Cp~--Cr~~i~ 502 (510)
.+..|+||++.+.++|.. .|||.| |..|+.+++... ..||+ ||..+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 346899999999999985 999999 999999998754 47999 999875
No 180
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.99 E-value=2.5e-06 Score=60.88 Aligned_cols=50 Identities=14% Similarity=0.269 Sum_probs=44.2
Q ss_pred cccccccccccceEEe-CCCCccchHHhHHHHhccCCcccccccccc--ceeEe
Q 010439 457 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRL 507 (510)
Q Consensus 457 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~i 507 (510)
..|+||++...++|.. +|||.| |..|+.+|...++.||+++.++. +.+.+
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 6899999999999999 999999 99999999987778999999985 34444
No 181
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.84 E-value=4.6e-06 Score=65.53 Aligned_cols=44 Identities=25% Similarity=0.557 Sum_probs=34.3
Q ss_pred ccccccccccccceEEe---CCCCccchHHhHHHHhcc--------CCcccc--cccc
Q 010439 456 SSSCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAK--------KGDCPV--CRTK 500 (510)
Q Consensus 456 ~~~C~iC~~~~~~~~~~---pCgH~~~C~~C~~~~~~~--------~~~Cp~--Cr~~ 500 (510)
...|.||++.....+.+ +|||.| |..|+...+.. ..+||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 36899999986654333 799999 99999887652 137999 9987
No 182
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.68 E-value=3.4e-05 Score=59.25 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=36.3
Q ss_pred cccccccccc-ceEEeCCCCccchHHhHHHHhcc-CCccccccccccceeEe
Q 010439 458 SCVICWEAPV-EGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRL 507 (510)
Q Consensus 458 ~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~~i 507 (510)
.|.+|--... -...+||.|+| |++|+..+..+ .+.||.|+.+|..+-++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 4677754432 23467999999 99999998754 46899999999876543
No 183
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=5.7e-05 Score=55.78 Aligned_cols=48 Identities=23% Similarity=0.633 Sum_probs=38.8
Q ss_pred cccccccccccccceE-EeCCCCccchHHhHHHHhccC--Cccccccccccc
Q 010439 455 SSSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ 503 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~ 503 (510)
....|.||++...... ...|+|.| ...|+.+|.+.+ ..||+||.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4468999999865433 33799999 999999998876 689999988753
No 184
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.43 E-value=6.6e-05 Score=53.16 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=37.5
Q ss_pred CcccccccccccccceEEeCCCCc----cchHHhHHHHhcc--CCcccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHM----AGCMSCLSEIKAK--KGDCPVCRTKIN 502 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~Cp~Cr~~i~ 502 (510)
++...|.||++...+....||.+. ++...|+.+|... +..||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 345689999987666667897641 3499999999864 458999998764
No 185
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.20 E-value=8.3e-05 Score=70.70 Aligned_cols=49 Identities=27% Similarity=0.678 Sum_probs=37.2
Q ss_pred Ccccccccccccccc------eEE--eCCCCccchHHhHHHHhccC-----------Cccccccccccc
Q 010439 454 GSSSSCVICWEAPVE------GAC--VPCGHMAGCMSCLSEIKAKK-----------GDCPVCRTKINQ 503 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~------~~~--~pCgH~~~C~~C~~~~~~~~-----------~~Cp~Cr~~i~~ 503 (510)
+...+|.||++...+ .++ .+|||.| ...|..+|.+.. +.||+||++|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345699999986544 222 2799999 999999997531 469999999864
No 186
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.02 E-value=0.0027 Score=47.74 Aligned_cols=48 Identities=27% Similarity=0.757 Sum_probs=40.2
Q ss_pred cccccccccccceEEeCCC-CccchHHhHHHHhccCCccccccccccceeEe
Q 010439 457 SSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL 507 (510)
Q Consensus 457 ~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i 507 (510)
..|-.|+-..+.- +.|. |.+ |..|...|...+..||+|..++...+++
T Consensus 29 ~nCKsCWf~~k~L--V~C~dHYL-Cl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 29 QFCKSCWFENKGL--VECNNHYL-CLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCSSCSCCSSE--EECSSCEE-EHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccChhhccccCCe--eeecchhh-HHHHHHHHHhhccCCcccCCcCCcceec
Confidence 6899999887754 4576 777 9999999999888999999998877654
No 187
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.22 E-value=0.056 Score=39.15 Aligned_cols=33 Identities=30% Similarity=0.635 Sum_probs=27.7
Q ss_pred ccccccccccccceEEeCC----CCccchHHhHHHHhc
Q 010439 456 SSSCVICWEAPVEGACVPC----GHMAGCMSCLSEIKA 489 (510)
Q Consensus 456 ~~~C~iC~~~~~~~~~~pC----gH~~~C~~C~~~~~~ 489 (510)
...|.+|.++..+.-|+.| .|.| |+.|.....+
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sIk 51 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESIK 51 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCee-eccccHHHHH
Confidence 3689999999999988888 4999 9999866543
No 188
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.09 E-value=0.07 Score=48.98 Aligned_cols=46 Identities=22% Similarity=0.575 Sum_probs=36.4
Q ss_pred ccccccccccccceEEe-CCCCccchHHhHHHHhccC--Ccccccccccc
Q 010439 456 SSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPVCRTKIN 502 (510)
Q Consensus 456 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~ 502 (510)
...|.||.+.......- .|+|.| ...|+.++.+.. ..||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 36899999986554443 499999 999999997654 38999998764
No 189
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.15 E-value=0.1 Score=40.78 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=24.9
Q ss_pred cccccccccc-ccceEE--eCCCCccchHHhHHHH
Q 010439 456 SSSCVICWEA-PVEGAC--VPCGHMAGCMSCLSEI 487 (510)
Q Consensus 456 ~~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~~ 487 (510)
+..|.||.+. +..++. +.|+|.| |..|...+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHH-hHHHCHHH
Confidence 3689999975 455555 8999999 99999983
No 190
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=75.21 E-value=2.2 Score=34.64 Aligned_cols=51 Identities=22% Similarity=0.463 Sum_probs=35.5
Q ss_pred CCCCCcccccccccccccceEEeCCCCccchHHhHHHH-----------hccCCccccccccc
Q 010439 450 VKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEI-----------KAKKGDCPVCRTKI 501 (510)
Q Consensus 450 ~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----------~~~~~~Cp~Cr~~i 501 (510)
.++++.+..|.||-+.-.-...-.|-..| |..|+.+. ....+.|+.|+.+-
T Consensus 51 ~d~Dg~~~~C~vC~dGG~LlcCd~Cpr~F-c~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp BCTTSCBSSCTTTCCCSEEEECSSSSCEE-EHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred cCCCCCCCcCeecCCCCeeEecCCCchhh-hHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 34456667899999875544444677888 99999864 12346899997653
No 191
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=69.99 E-value=0.75 Score=43.70 Aligned_cols=44 Identities=23% Similarity=0.500 Sum_probs=33.9
Q ss_pred cccccccccccceEEe----CCCCcc-chHHhHHHHhccCCcccccccc
Q 010439 457 SSCVICWEAPVEGACV----PCGHMA-GCMSCLSEIKAKKGDCPVCRTK 500 (510)
Q Consensus 457 ~~C~iC~~~~~~~~~~----pCgH~~-~C~~C~~~~~~~~~~Cp~Cr~~ 500 (510)
..|+||-..+.-.++. .=|+.+ .|..|...|.....+||.|...
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 6899999998776654 245432 3999999998777799999875
No 192
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=64.63 E-value=5.3 Score=33.03 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=35.7
Q ss_pred CCCCcccccccccccccceEEeCCCCccchHHhHHHHh-----------ccCCcccccccc
Q 010439 451 KDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIK-----------AKKGDCPVCRTK 500 (510)
Q Consensus 451 ~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~Cp~Cr~~ 500 (510)
.+++.+..|.||.+.-.-...-.|-..| |..|+.... ...+.||.|+..
T Consensus 58 d~Dg~~d~C~vC~~GG~LlcCD~Cpr~F-h~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCCSSEEECSSSCCEE-EHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCCCcEEeCCCCCCee-eHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3455667999999887655555788888 999998532 234689999853
No 193
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=63.17 E-value=3.7 Score=29.02 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=29.8
Q ss_pred cccccccccccceEEeCCCCccchHHhHHHHhc----cCCcccccccc
Q 010439 457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA----KKGDCPVCRTK 500 (510)
Q Consensus 457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~Cp~Cr~~ 500 (510)
..|.||.+...-...--|...| ...|...-.. ..+.||.|+..
T Consensus 13 ~~C~vC~~~~~ll~Cd~C~~~~-H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDGTDVLRCTHCAAAF-HWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCCTTCEECSSSCCEE-CHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCCCeEEECCCCCCce-ecccCCCccCcCCCCCEECccccCC
Confidence 5799998876544445687777 9999753222 23589999754
No 194
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=57.59 E-value=13 Score=27.60 Aligned_cols=45 Identities=33% Similarity=0.743 Sum_probs=30.7
Q ss_pred cccccccccc---cc-eEEe---CCCCccchHHhHHHHhc-cCCcccccccccc
Q 010439 457 SSCVICWEAP---VE-GACV---PCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN 502 (510)
Q Consensus 457 ~~C~iC~~~~---~~-~~~~---pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 502 (510)
..|.||-|.. .+ -+|+ -|+--+ |..|.+--.+ .+..||.|+....
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPv-CrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPA-CRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCC-CHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChh-hHHHHHHHHhccCccccccCCccc
Confidence 6899999872 11 1344 455455 9999876654 3457999998875
No 195
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=54.85 E-value=12 Score=27.53 Aligned_cols=31 Identities=23% Similarity=0.523 Sum_probs=21.6
Q ss_pred cccccccccccccceEEeCC---CCccchHHhHHHH
Q 010439 455 SSSSCVICWEAPVEGACVPC---GHMAGCMSCLSEI 487 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pC---gH~~~C~~C~~~~ 487 (510)
.+..|.||-.-..+. ++|| +-+| ...|..++
T Consensus 14 ~D~~C~VC~~~t~~~-l~pCRvC~Rvf-H~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTAES-LFPCRVCTRVF-HDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCSSC-CSSCSSSSSCC-CHHHHHHH
T ss_pred CCcccCccccccccc-eeccccccccc-cHhhcccc
Confidence 457899998544333 3454 5666 99999998
No 196
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=54.31 E-value=6 Score=27.63 Aligned_cols=35 Identities=26% Similarity=0.511 Sum_probs=25.5
Q ss_pred CCcccccccccccccceEEeCCCCccchHHhHHHHh
Q 010439 453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIK 488 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~ 488 (510)
.++..-|+||.+. .....+.|.--.+|..|...+-
T Consensus 5 ~ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED-ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHc
Confidence 4455689999988 5577889943444999987765
No 197
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=49.14 E-value=7.9 Score=26.75 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=28.3
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHHHh----ccCCccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIK----AKKGDCPVCRT 499 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~~~~~Cp~Cr~ 499 (510)
.+...|.||.+...-...--|--.| ...|...-. ...+.||.|+.
T Consensus 9 ~~~~~C~vC~~~g~ll~CD~C~~~f-H~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEIILCDTCPRAY-HMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCSSEEECSSSSCEE-EHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCCcEEECCCCChhh-hhhccCCCCCCCCCCceECccccc
Confidence 3446899998754333333566655 888876521 22458999975
No 198
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=47.64 E-value=8.5 Score=26.44 Aligned_cols=40 Identities=23% Similarity=0.605 Sum_probs=29.4
Q ss_pred cccccccccccceE---EeCCCCccchHHhHHHHhccCCccccc
Q 010439 457 SSCVICWEAPVEGA---CVPCGHMAGCMSCLSEIKAKKGDCPVC 497 (510)
Q Consensus 457 ~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~~~~~~~Cp~C 497 (510)
..|-.|...+.+.. .-.|++.| |.+|-.-+-..-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~F-C~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVF-CVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCB-CHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCc-ccchhHHHHhhccCCcCC
Confidence 35888888775433 33688888 999977766655679988
No 199
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.96 E-value=1.3 Score=36.40 Aligned_cols=45 Identities=22% Similarity=0.569 Sum_probs=31.8
Q ss_pred cccccccccccc-----cceEEeCCCCccchHHhHHHHhcc----CCcccccccc
Q 010439 455 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKAK----KGDCPVCRTK 500 (510)
Q Consensus 455 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~----~~~Cp~Cr~~ 500 (510)
+...|.+|...+ ...++.-|.|.+ |..|....... .+.|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 346899999876 344666899999 99997655221 2469999764
No 200
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=45.90 E-value=17 Score=39.79 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=43.8
Q ss_pred CCcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
..+...|+|-++...++|.+|.||...=..++.+|......||+-|.++..
T Consensus 888 iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456679999999999999999996433999999998877799999998864
No 201
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=45.53 E-value=3.5 Score=28.59 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=27.4
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHH-Hh---ccCCccccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IK---AKKGDCPVCRTKI 501 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~---~~~~~Cp~Cr~~i 501 (510)
.+...|.||.+...-...--|...| ...|... +. ...+.||.|+...
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~f-H~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSY-HIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCB-CSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHH-cccccCCCcCcCCCCccCChhhcCch
Confidence 4456899998754333333455555 6666542 21 2245799997653
No 202
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=44.71 E-value=9 Score=37.01 Aligned_cols=45 Identities=24% Similarity=0.580 Sum_probs=31.8
Q ss_pred cccccccccccceE-EeCCCCccchHHhHHHHh----ccCCcccccccccc
Q 010439 457 SSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIK----AKKGDCPVCRTKIN 502 (510)
Q Consensus 457 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~----~~~~~Cp~Cr~~i~ 502 (510)
..|++-+.+...++ ...|.|.- |++-..-+. ...++||+|.+.+.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCcccC
Confidence 57999888877666 45799997 766643333 22468999988773
No 203
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=44.23 E-value=15 Score=30.72 Aligned_cols=52 Identities=27% Similarity=0.556 Sum_probs=34.9
Q ss_pred CCCCCCcccccccccccccceEEe--CCCCccchHHhHHHHhcc----------CCccccccccc
Q 010439 449 NVKDDGSSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAK----------KGDCPVCRTKI 501 (510)
Q Consensus 449 ~~~~~~~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~----------~~~Cp~Cr~~i 501 (510)
..++++.+.-|.||-+...-...- .|-..| |..|+.++... ++.|=+|....
T Consensus 72 ~~DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~F-C~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 72 QYDDDGYQSYCTICCGGREVLMCGNNNCCRCF-CVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp CBCTTSSBSSCTTTSCCSEEEECSSTTTCCEE-EHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred ccCCCCCcceeeEecCCCeEEeeCCCCCCCch-hHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 344566677999999865332222 466777 99999887542 35799996543
No 204
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=43.07 E-value=19 Score=35.05 Aligned_cols=52 Identities=25% Similarity=0.542 Sum_probs=38.2
Q ss_pred CCCCCCcccccccccccccceEEe--CCCCccchHHhHHHHhc----------cCCccccccccc
Q 010439 449 NVKDDGSSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKA----------KKGDCPVCRTKI 501 (510)
Q Consensus 449 ~~~~~~~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~----------~~~~Cp~Cr~~i 501 (510)
..++++.+.-|.+|-+...-..+- .|...| |..|+.++.. .++.|=+|...-
T Consensus 86 ~~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~F-C~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 86 LYDDDGYQSYCSICCSGETLLICGNPDCTRCY-CFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp CBCSSSSBCSCTTTCCCSSCEECCSTTCCCEE-CHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred ccCCCCCcccceEcCCCCeEEEeCCCCCCcch-HHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 444566677999999877655555 788888 9999988862 246899997653
No 205
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.69 E-value=3.4 Score=28.07 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=26.1
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHH-Hh---ccCCccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IK---AKKGDCPVCRT 499 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~---~~~~~Cp~Cr~ 499 (510)
+++..|.||.+...-...--|...| ...|... +. ...+.||.|+.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~-H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVY-HLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEE-CSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcce-ECccCCCCcCCCCCCceEChhhhC
Confidence 3456899998865433333565455 6666542 11 12347999864
No 206
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.29 E-value=3.3 Score=34.79 Aligned_cols=45 Identities=20% Similarity=0.552 Sum_probs=31.6
Q ss_pred cccccccccccc-----cceEEeCCCCccchHHhHHHHhc-cCCcccccccc
Q 010439 455 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTK 500 (510)
Q Consensus 455 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~ 500 (510)
++..|.+|...+ .-.++.-|.|.+ |..|...... ..+.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 457999999873 455677899999 9999733221 12469999764
No 207
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.78 E-value=12 Score=36.07 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=32.4
Q ss_pred cccccccccccceE-EeCCCCccchHHhHHHHhc----cCCcccccccccc
Q 010439 457 SSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKA----KKGDCPVCRTKIN 502 (510)
Q Consensus 457 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~----~~~~Cp~Cr~~i~ 502 (510)
..|++-+.+...++ ...|.|.- |++-..-+.. ..+.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~Hlq-CFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQ-CFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCC-CEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccCCcCCCCCCCc-cCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 47999888877666 45799997 7776544432 2468999998774
No 208
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=37.01 E-value=5.5 Score=35.37 Aligned_cols=46 Identities=17% Similarity=0.430 Sum_probs=28.1
Q ss_pred CcccccccccccccceEEeCCCCccchHHhHHH----HhccCCcccccccc
Q 010439 454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE----IKAKKGDCPVCRTK 500 (510)
Q Consensus 454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----~~~~~~~Cp~Cr~~ 500 (510)
.+...|.||.+...-..+-.|...| +..|... +-...+.||.|+..
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~-H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVF-HLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEE-CTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCcc-CCccCCCCCCCCCCCCEEeCceeCc
Confidence 4456899998765433333566565 7777532 11234579999864
No 209
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.93 E-value=18 Score=27.02 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=28.2
Q ss_pred Ccccccccccccc--cceEEe---CCCCccchHHhHHHH--hccCCcccccccccc
Q 010439 454 GSSSSCVICWEAP--VEGACV---PCGHMAGCMSCLSEI--KAKKGDCPVCRTKIN 502 (510)
Q Consensus 454 ~~~~~C~iC~~~~--~~~~~~---pCgH~~~C~~C~~~~--~~~~~~Cp~Cr~~i~ 502 (510)
++...|.||.+.. ..-.++ -|.-.| ...|...- -...+.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~f-H~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAV-HQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCC-CHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchh-hcccCCCCccCCCceECccccCccc
Confidence 4557899999754 111222 455554 77776432 223468999976543
No 210
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.85 E-value=4.9 Score=29.12 Aligned_cols=46 Identities=26% Similarity=0.605 Sum_probs=32.2
Q ss_pred Ccccccccccccc-----cceEEeCCCCccchHHhHHHHhccCCcccccccc
Q 010439 454 GSSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK 500 (510)
Q Consensus 454 ~~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~ 500 (510)
+.+..|..|.+.+ .-.+..-|.|.+ |..|-.......+.|-+|-+.
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rV-C~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLV-CRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEEC-CTTSEEECSTTCEEEHHHHSS
T ss_pred CCccchhhhCccccccccCCCcCcccChhh-cccccccCCCCCEEEeeCchh
Confidence 4457899999873 556677899999 999953332333468888554
No 211
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.13 E-value=4.7 Score=30.32 Aligned_cols=47 Identities=17% Similarity=0.399 Sum_probs=28.1
Q ss_pred ccccccccccccc---ceEEe--CCCCccchHHhHHH--------HhccCCcccccccccc
Q 010439 455 SSSSCVICWEAPV---EGACV--PCGHMAGCMSCLSE--------IKAKKGDCPVCRTKIN 502 (510)
Q Consensus 455 ~~~~C~iC~~~~~---~~~~~--pCgH~~~C~~C~~~--------~~~~~~~Cp~Cr~~i~ 502 (510)
+...|.||..... +.+++ -|...| ...|... +-...+.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~y-H~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLY-HQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEE-ETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeE-cCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4468999987632 22222 566555 6677532 2234568999976554
No 212
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=31.07 E-value=9.1 Score=26.89 Aligned_cols=47 Identities=19% Similarity=0.487 Sum_probs=28.1
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHH-H---hccCCcccccccccc
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-I---KAKKGDCPVCRTKIN 502 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~---~~~~~~Cp~Cr~~i~ 502 (510)
++..|.||.+...-...--|.-.| ...|... + -...+.||.|...-.
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~f-H~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAF-HLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEE-CTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCccCCCCCCEEEcCCCChhh-cccccCCCcCcCCCCCeECccccCccc
Confidence 446899999765433333566555 6667652 1 123457999976443
No 213
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.46 E-value=8.7 Score=29.12 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=26.2
Q ss_pred CCccccccccccccc---ceEEeCCCCccchHHhHHH-Hh---ccCCcccccccc
Q 010439 453 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSE-IK---AKKGDCPVCRTK 500 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~-~~---~~~~~Cp~Cr~~ 500 (510)
..+...|.||..... -+..--|...| ...|... +. ...+.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~-H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNY-HIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEE-CSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchh-ccccCCCCcccCCCCCcCCccCcCc
Confidence 344568999987642 22222566544 5566541 11 224579999764
No 214
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=30.39 E-value=1e+02 Score=30.05 Aligned_cols=49 Identities=24% Similarity=0.239 Sum_probs=32.2
Q ss_pred HHHHcCCHHHHHHHHHcCCCCcccC--------------CCCChHHHHHHHhCCcHHHHHHHHH
Q 010439 23 QWVIAGDVDAIRALRSQGASLEWMD--------------KEGKTPLIVACMDSGLINVAKTLIE 72 (510)
Q Consensus 23 ~A~~~g~~~~v~~Ll~~g~~~~~~d--------------~~g~TpL~~A~~~~~~~~~v~~Ll~ 72 (510)
..+..|+...|+..|..|.|++.+= ..|.|.+|+|++. .+.+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~-~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRF-QRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhh-hhhhHHHHhhh
Confidence 3446899999999999998874321 2355666666555 55555555554
No 215
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.43 E-value=27 Score=29.75 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=18.2
Q ss_pred EeCCCCccchHHhHHHHhccCCccccccccccceeEe
Q 010439 471 CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL 507 (510)
Q Consensus 471 ~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i 507 (510)
+..|||.+. ......||+|..+-..|.++
T Consensus 141 C~~CG~i~~--------~~~p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 141 CPICGYTAV--------DEAPEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CTTTCCEEE--------SCCCSBCTTTCCBGGGCEEE
T ss_pred eCCCCCeeC--------CCCCCCCCCCCCCHHHceec
Confidence 345777762 12223799999887776654
No 216
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.32 E-value=14 Score=27.65 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=27.2
Q ss_pred CCcccccccccccccceEEeCCCCccchHHhHHHH----hccCCcccccccc
Q 010439 453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEI----KAKKGDCPVCRTK 500 (510)
Q Consensus 453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~~~~~Cp~Cr~~ 500 (510)
.++...|.||.+.-.-...--|--.| ...|...- -...+.||.|+..
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~f-H~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCF-HLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEE-CTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCce-ecccCCCCCCCCcCCCcCCccccCC
Confidence 45557899999765433333454444 66665321 1224579999743
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=26.05 E-value=3e+02 Score=23.31 Aligned_cols=133 Identities=10% Similarity=-0.044 Sum_probs=85.3
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHH
Q 010439 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94 (510)
Q Consensus 15 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~ 94 (510)
.+.++-+-.|+..|++++...+.+.. .+...+.-|--++...|++++++.-..+--|+. ..+.+..
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~---------~L~~Ly~ 71 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFD---------KLSFLYL 71 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH---------HHHHHHH
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH---------HHHHHHH
Confidence 45578899999999999988776642 122334455555555699999998887754443 3445555
Q ss_pred HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010439 95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI-NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 173 (510)
Q Consensus 95 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~-~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~ 173 (510)
..|+.+-++.|.+.- ....+-..+++.+...|.+ +++++|++.|--. -+.. +|..++..++.+-
T Consensus 72 ~tg~~e~L~kla~iA----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~----------eA~~-~A~t~g~~~~a~~ 136 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIA----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP----------LAYA-VAKANGDEAAASA 136 (177)
T ss_dssp HHTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH----------HHHH-HHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHH----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH----------HHHH-HHHHcCcHHHHHH
Confidence 667777766664421 1122334577888788876 5777776554221 2344 5677888888887
Q ss_pred Hhh
Q 010439 174 VIP 176 (510)
Q Consensus 174 Ll~ 176 (510)
+++
T Consensus 137 ~~~ 139 (177)
T 3mkq_B 137 FLE 139 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.01 E-value=1.1e+02 Score=30.94 Aligned_cols=141 Identities=15% Similarity=-0.015 Sum_probs=76.1
Q ss_pred HHHHHHcCCHHHHH----HHHHcCCCCcccCCCCChHHHHHHHhCCc-------------HHHHHHHHHcCCCccccCCC
Q 010439 21 LYQWVIAGDVDAIR----ALRSQGASLEWMDKEGKTPLIVACMDSGL-------------INVAKTLIELGANINAYRPG 83 (510)
Q Consensus 21 L~~A~~~g~~~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~-------------~~~v~~Ll~~ga~~n~~~~d 83 (510)
|-..++.|+++-.. .+.+.|..+|.. -.+.|..++...+. .++.+.+.+.|..+|..
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~--- 106 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA--- 106 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH---
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH---
Confidence 34444678876544 445577766554 35677777654232 34566667788877754
Q ss_pred CCCChHHHHHHHcCCHHHHHHH----HHCCCCCccCCCCCCcHHHHHHHcCCHH----HHHHHHhccccccccccccCCC
Q 010439 84 GRGGTPLHHAAKRGLEPTVRLL----LSCGANALVRNDDCHTALGVARIKGHIN----VVRAIESHICYFCGWLREFYGP 155 (510)
Q Consensus 84 ~~g~TpLh~A~~~g~~~~v~~L----l~~gad~~~~d~~g~TpL~~A~~~g~~~----~v~~Ll~~ga~~~~~~~d~~g~ 155 (510)
.-.+-+...++.|..+-+..| .+.|..++.... .+.+...+..|..+ +.+.+.+.|..++ ..-.
T Consensus 107 -tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-----~~ty 178 (501)
T 4g26_A 107 -TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY--GPALFGFCRKGDADKAYEVDAHMVESEVVPE-----EPEL 178 (501)
T ss_dssp -HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-----HHHH
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee--hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-----HHHH
Confidence 122344555677887654444 456766554321 23344455677765 4444455565544 1223
Q ss_pred CHHHHHhhhcCCHHHHHHHh
Q 010439 156 SFLEALAPQLMSRKIWVVVI 175 (510)
Q Consensus 156 t~L~~~A~~~~~~~~~~~Ll 175 (510)
+.|....+..|..+-+.-|+
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHH
Confidence 33432556667655444443
No 219
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=24.24 E-value=11 Score=25.84 Aligned_cols=46 Identities=22% Similarity=0.580 Sum_probs=27.1
Q ss_pred cccccccccccccceEEeCCCCccchHHhHHH-Hh---ccCCccccccccc
Q 010439 455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IK---AKKGDCPVCRTKI 501 (510)
Q Consensus 455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~---~~~~~Cp~Cr~~i 501 (510)
++..|.||.+...-...--|.-.| ...|... +. ...+.||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~f-H~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVY-HLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEE-CGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCE-ECCcCCCCcCCCCCCceEChhccChh
Confidence 346899998764433333566555 6677652 11 1235799996644
No 220
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=23.75 E-value=48 Score=20.30 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=14.0
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 010439 20 LLYQWVIAGDVDAIRALRS 38 (510)
Q Consensus 20 ~L~~A~~~g~~~~v~~Ll~ 38 (510)
-+..|+..|+++.++.|=.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 4667788888888887643
No 221
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=22.83 E-value=9.3 Score=30.55 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=27.8
Q ss_pred ccccccccccc----ceEEeCCCCccchHHhHHHHhccCCcccccccc
Q 010439 457 SSCVICWEAPV----EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK 500 (510)
Q Consensus 457 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~ 500 (510)
..|..|...+. .-....||..| |..|........+.|-.|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if-C~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF-CMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE-CGGGEEC----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCee-CHHHhCCCCCCceECHHHHHH
Confidence 57999987653 34456899999 999965433333468777543
No 222
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.06 E-value=35 Score=22.89 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=11.5
Q ss_pred CccccccccccceeEe
Q 010439 492 GDCPVCRTKINQVIRL 507 (510)
Q Consensus 492 ~~Cp~Cr~~i~~~~~i 507 (510)
..||+|.+.-.+|..+
T Consensus 37 w~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 37 WVCPLCGVGKDEFEEV 52 (54)
T ss_dssp CBCTTTCCBGGGEEEC
T ss_pred CcCcCCCCcHHHceEc
Confidence 3699998877766653
No 223
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=21.68 E-value=31 Score=26.95 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=20.3
Q ss_pred cccccccccccceEEeCCCCccch
Q 010439 457 SSCVICWEAPVEGACVPCGHMAGC 480 (510)
Q Consensus 457 ~~C~iC~~~~~~~~~~pCgH~~~C 480 (510)
..|.+|......-+.+-|||+. |
T Consensus 25 ~~C~~C~~~~~~W~CL~CG~vg-C 47 (109)
T 3c5k_A 25 QPCGDCGTIQENWVCLSCYQVY-C 47 (109)
T ss_dssp CCCTTTCCCSSEEEETTTCCEE-E
T ss_pred CcCccccCCCCeeeeeecCccc-c
Confidence 4799999887778899999999 7
No 224
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.53 E-value=50 Score=26.08 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=32.2
Q ss_pred ccccccccccc---ceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439 457 SSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503 (510)
Q Consensus 457 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 503 (510)
..|..|..... ...+..=|..+ |..|..++-..+.+|-.|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~y-C~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMIL-CRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEE-CHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeee-cHHHHHHHcCCCCccccCCCCcCc
Confidence 36777776664 22344456666 999998876544579999999975
No 225
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.18 E-value=27 Score=24.87 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=26.6
Q ss_pred cccccccccccc-----cceEEeCCCCccchHHhHHHH--hccCCcccccccc
Q 010439 455 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEI--KAKKGDCPVCRTK 500 (510)
Q Consensus 455 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~--~~~~~~Cp~Cr~~ 500 (510)
+...|.||.+.. .-...-.|.-.| ...|...- -...+.||.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~-H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAV-HQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEE-EHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCcc-ccccCCCCcCCCCCcCCccCcCc
Confidence 446899998653 222222566555 77776432 2234579999764
No 226
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=21.08 E-value=17 Score=25.26 Aligned_cols=46 Identities=30% Similarity=0.465 Sum_probs=26.7
Q ss_pred cccccccccccc-----cceEEeCCCCccchHHhHHH------H-hccCCccccccccc
Q 010439 455 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSE------I-KAKKGDCPVCRTKI 501 (510)
Q Consensus 455 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~------~-~~~~~~Cp~Cr~~i 501 (510)
+...|.||.... .-...--|.-.| ...|... + -...+.|+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~-H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGY-HQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEE-ETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHH-HhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 446899998752 222222566555 6666432 2 23456899997654
No 227
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.60 E-value=46 Score=22.04 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=11.0
Q ss_pred ccccccccccceeEe
Q 010439 493 DCPVCRTKINQVIRL 507 (510)
Q Consensus 493 ~Cp~Cr~~i~~~~~i 507 (510)
.||+|.+.-..|..+
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 699998877766653
No 228
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.58 E-value=27 Score=27.70 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=19.3
Q ss_pred ccceEEeCCCCccchHHhHHHHhccCC-ccccccccccce
Q 010439 466 PVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQV 504 (510)
Q Consensus 466 ~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~~ 504 (510)
+....+..|||.| .+..... .||.|..+...+
T Consensus 71 p~~~~C~~CG~~~-------e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 71 KVELECKDCSHVF-------KPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CCEEECSSSSCEE-------CSCCSTTCCCSSSSSCCCEE
T ss_pred cceEEcCCCCCEE-------eCCCCCCCcCccccCCCcEE
Confidence 3444555788887 1222335 699998875443
No 229
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.54 E-value=28 Score=27.93 Aligned_cols=29 Identities=24% Similarity=0.776 Sum_probs=22.1
Q ss_pred ccccccccccc----ceEEeCCCCccchHHhHHH
Q 010439 457 SSCVICWEAPV----EGACVPCGHMAGCMSCLSE 486 (510)
Q Consensus 457 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~ 486 (510)
..|.+|...+. .--...||+.| |..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf-C~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF-CAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE-CGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEE-ChHHhCC
Confidence 57999988753 23456899999 9999654
No 230
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.46 E-value=17 Score=28.10 Aligned_cols=26 Identities=31% Similarity=0.755 Sum_probs=15.7
Q ss_pred EeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439 471 CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502 (510)
Q Consensus 471 ~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 502 (510)
+..||+.| + ..+ ....+||.|+..-.
T Consensus 70 C~~CG~~F-~----~~~-~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 70 CRKCGFVF-K----AEI-NIPSRCPKCKSEWI 95 (105)
T ss_dssp BTTTCCBC-C----CCS-SCCSSCSSSCCCCB
T ss_pred hhhCcCee-c----ccC-CCCCCCcCCCCCcc
Confidence 45799998 2 111 12247999987543
Done!