Query 010440
Match_columns 510
No_of_seqs 201 out of 411
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 00:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2568 Predicted membrane pro 100.0 1E-112 3E-117 899.8 38.7 482 19-510 7-508 (518)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 4.8E-67 1E-71 532.5 32.3 288 180-467 1-295 (295)
3 KOG2569 G protein-coupled seve 100.0 2E-41 4.3E-46 344.1 5.8 287 175-477 123-427 (440)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.6 7.8E-14 1.7E-18 139.9 24.1 244 200-454 2-255 (257)
5 KOG4290 Predicted membrane pro 98.9 1.3E-08 2.9E-13 104.5 12.8 232 213-462 160-399 (429)
6 PF06664 MIG-14_Wnt-bd: Wnt-bi 93.1 12 0.00025 38.5 22.8 141 247-395 78-229 (298)
7 PRK11715 inner membrane protei 74.2 13 0.00028 40.7 8.4 93 156-261 234-339 (436)
8 PF06123 CreD: Inner membrane 74.1 12 0.00026 40.8 8.2 82 175-261 239-333 (430)
9 KOG1734 Predicted RING-contain 56.4 61 0.0013 33.3 8.5 46 362-407 89-143 (328)
10 KOG2569 G protein-coupled seve 55.5 16 0.00034 39.3 4.4 84 177-260 296-393 (440)
11 TIGR02908 CoxD_Bacillus cytoch 54.1 1.6E+02 0.0035 26.3 9.9 55 250-304 49-103 (110)
12 PF09437 Pombe_5TM: Pombe spec 52.2 5.5 0.00012 38.0 0.4 139 176-326 36-187 (256)
13 PF01534 Frizzled: Frizzled/Sm 45.2 3E+02 0.0065 29.0 12.1 27 360-386 180-209 (328)
14 PF05297 Herpes_LMP1: Herpesvi 44.7 7.3 0.00016 40.1 0.0 18 442-459 169-186 (381)
15 PF13491 DUF4117: Domain of un 43.1 2.7E+02 0.0058 25.6 10.5 68 206-273 41-109 (171)
16 PRK02983 lysS lysyl-tRNA synth 42.6 1.4E+02 0.0031 36.6 10.3 32 437-468 201-232 (1094)
17 PF11368 DUF3169: Protein of u 38.7 38 0.00083 33.9 4.1 20 399-418 7-26 (248)
18 COG3965 Predicted Co/Zn/Cd cat 34.5 5.5E+02 0.012 26.7 11.3 28 219-246 18-45 (314)
19 TIGR00945 tatC Twin arginine t 30.5 4.3E+02 0.0092 25.9 9.9 25 222-246 58-82 (215)
20 CHL00182 tatC Sec-independent 29.6 5.8E+02 0.013 25.8 10.8 25 222-246 79-103 (249)
21 PF06900 DUF1270: Protein of u 28.8 1.8E+02 0.004 22.4 5.3 44 399-453 3-46 (53)
22 PF03904 DUF334: Domain of unk 25.6 6.2E+02 0.013 25.5 9.8 33 386-418 136-168 (230)
23 CHL00043 cemA envelope membran 25.5 61 0.0013 33.1 3.0 41 345-386 209-249 (261)
24 PF10160 Tmemb_40: Predicted m 25.4 5.3E+02 0.012 26.5 9.6 75 361-443 14-88 (261)
25 COG4393 Predicted membrane pro 25.1 8.7E+02 0.019 26.0 15.7 69 347-417 189-262 (405)
26 PRK10263 DNA translocase FtsK; 24.6 4.4E+02 0.0096 33.1 10.2 42 207-248 59-101 (1355)
27 PF03040 CemA: CemA family; I 24.4 58 0.0013 32.7 2.6 41 345-386 178-218 (230)
28 COG4736 CcoQ Cbb3-type cytochr 23.1 98 0.0021 24.7 3.1 18 450-467 20-37 (60)
29 COG0805 TatC Sec-independent p 21.9 8.6E+02 0.019 24.8 12.8 26 221-246 71-96 (255)
30 PRK02507 proton extrusion prot 21.8 79 0.0017 34.5 3.1 41 345-386 370-410 (422)
31 PRK10921 twin-arginine protein 20.9 8.8E+02 0.019 24.6 12.1 24 223-246 70-93 (258)
32 PF13042 DUF3902: Protein of u 20.7 6.4E+02 0.014 23.9 8.3 85 226-324 6-92 (161)
No 1
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.4e-112 Score=899.79 Aligned_cols=482 Identities=46% Similarity=0.777 Sum_probs=443.0
Q ss_pred HHhhhhccccceeecccCCCcccCCCeEEEecCCceeecccCCCCCCCCCCCCCCCCCceeEEeeeEeecCccccccccc
Q 010440 19 CVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDASSSDKPLKGKSFIRFETVTFVRPKESASKQNE 98 (510)
Q Consensus 19 ~~~~~~~~~~~s~h~y~~~~f~~~~~~~~~~~~~eg~y~~~~~~~~~~~~~~~~~~~~s~i~f~~~~f~~~~~~~~~~~~ 98 (510)
+.|++.+.+.+|+|+|..+.|....|++.+|||+||+|+|.. .|+.++..| .|+|||+++++.|+++.++++|+
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ys~~~---~d~~~s~~p---~~~~~f~~~t~~~~~~~~~~~n~ 80 (518)
T KOG2568|consen 7 LRLLISLLAWLSFLSYVYSEFASELNAQHFHGVSEGIYSSFV---SDLFGSLDP---ESFIRFDSITLVRTSESADEQNS 80 (518)
T ss_pred HHHHHHHhhhHhheechhhhhhhhhcceeeeccccccccccH---HHhcCCCCc---cccccceeEEEEEccCccccccc
Confidence 344444455999999999999999999999999999999854 566666666 89999999999999987766654
Q ss_pred cccccceEEEEEEeeccccccCcccC-CCeeeecCccccccCCCCCCCEEecCCCCCCCCceeeeeeeccCcccccc-ce
Q 010440 99 MQTITGMVEAIILEVKERERIGGSFL-KTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQI-SE 176 (510)
Q Consensus 99 ~~~~~g~v~~vIfe~~D~~~iG~~~~-g~~~~cC~~~~~~~g~C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~l-~~ 176 (510)
.|.|+++|||+||+++||++.+ |++.||||+++++.|.|++|++|+.|+++||.||++..+.+++++.+..+ +.
T Consensus 81 ----~~~v~~~ife~kd~~~iG~~~~~~e~~~~C~~~~~~~g~c~~~~~i~~~~~~dp~~~~~~~~~~t~~~~e~~m~~~ 156 (518)
T KOG2568|consen 81 ----NGLVEALIFEFKDRNKIGGSDDDGEKLYICTPDLADTGSCKEGEVIYLPNPTDPEWPKLNSVILTFNDAEVGMSPP 156 (518)
T ss_pred ----ccceeeeeeehhhhhccCCcCCCCceEEecCHhHHhcCCcCCCceEEecCCCCCCcccccceeecccccccCCCCc
Confidence 4899999999999999999998 99999999999999999999999999999999999999999999887888 89
Q ss_pred eEEecccceEEEEEEEeCCCCCceEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010440 177 EVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHY 256 (510)
Q Consensus 177 ~y~V~ktG~Y~v~~~~C~~~~~~~~~~g~v~f~N~~GyLpa~e~pll~fY~~msi~Y~vl~~~W~~~~~k~r~~il~lq~ 256 (510)
.|+|+|||+||+++..|+++.++.+.+|+|+||||||||||+++|++|||++|+++|.+++++|+++|+|||||++|||+
T Consensus 157 ~~~I~ktG~Y~v~~~~~~~s~~~~~~~~~v~wkNpyGyL~a~~~Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~ 236 (518)
T KOG2568|consen 157 AYPIKKTGYYCVYFISCDSSLESYKATGSVNWKNPYGYLPASDAPLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQK 236 (518)
T ss_pred eEEeccCcEEEEEEEeecCccccccccceEEEECCCCCcChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccceeEEehhHH
Q 010440 257 YITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVY 336 (510)
Q Consensus 257 ~I~avl~l~~le~~~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~tls~~LlLlVslGyGvVrp~L~~~~~kv~~l~v~y 336 (510)
||++|++|+|+|++++|++|.++|.+|.+|++.++++++++|+|+|++|+|+|+||||||||||+||+.+.|+..++++|
T Consensus 237 ~I~~Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~ 316 (518)
T KOG2568|consen 237 YITAVIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIY 316 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010440 337 FVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSI 416 (510)
Q Consensus 337 fv~s~~l~v~~~v~~~~d~s~~~~L~lvlpla~l~a~f~~WI~~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~l~~~vi~s~ 416 (510)
|++++++.+++.++++++.++...+|.++|+|+++++|++|||+||++|+++||.|||.+||+|||||.++|+++|++++
T Consensus 317 ~i~s~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~ 396 (518)
T KOG2568|consen 317 FIASEILGLARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASF 396 (518)
T ss_pred HHHHHHHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhheeecccccchhHHHHhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccCCCCcccc-cceeccCc-----
Q 010440 417 AWIGFELYFNATDPLNELWQIAWIIPAFWALLAFILLVVICALWAPSRNPTRYAYSEEMGDDFDEE-TVSLTSSG----- 490 (510)
Q Consensus 417 ~~i~~~l~f~~~~~~~~~Wk~~W~i~~~w~~l~f~~~~~I~~LWRPt~~n~~~A~s~E~~~d~d~e-~~~l~~~~----- 490 (510)
+|++++.++.+..+++++||.+|+++++|++++|.++++||+|||||+||+|||++++.+||.||| +-++....
T Consensus 397 ~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~~l~~~iLvvI~~LWrPS~nn~ryA~s~l~~d~~ee~~~~~~~~~~~~~~~ 476 (518)
T KOG2568|consen 397 AFILVETIFYSIMSCNKDWKERWVDTAFWPLLFFLILVVIMFLWRPSQNNQRYAFSPLSDDDEEEEEEESLDLLESLTEG 476 (518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhhhhhhhccccccc
Confidence 999999888777789999999999999999999999999999999999999999999887776444 23333221
Q ss_pred -c-cccccc----------ccCCCCcchhccC
Q 010440 491 -I-KNVEMA----------ANLGEDLEEDKRE 510 (510)
Q Consensus 491 -~-~~~~~~----------~~~~~~~~~~~~~ 510 (510)
. ...|++ -+.+||+||+|||
T Consensus 477 ~~~~~~k~~~~~~~~~~~~~~~~dDle~~~~~ 508 (518)
T KOG2568|consen 477 AKSRADKRKSLGKADPNKALNFEDDLEEVEEE 508 (518)
T ss_pred Cccccccccccccccccchhchhhhhhccccc
Confidence 1 222222 4567899999986
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=4.8e-67 Score=532.53 Aligned_cols=288 Identities=40% Similarity=0.785 Sum_probs=272.9
Q ss_pred ecccceEEEEEEEeCCCC----CceEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 010440 180 IERTGMYYLYFMYCDPQL----KGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLH 255 (510)
Q Consensus 180 V~ktG~Y~v~~~~C~~~~----~~~~~~g~v~f~N~~GyLpa~e~pll~fY~~msi~Y~vl~~~W~~~~~k~r~~il~lq 255 (510)
|+|||+||+++++|+|+. ++.+++|+++|+||||||||+|+|++|+|++|+++|++++++|++.++||||+++|+|
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~N~~gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih 80 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFKNPYGYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIH 80 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEECCCCCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 689999999999999764 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheecccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccceeEEehhH
Q 010440 256 YYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLV 335 (510)
Q Consensus 256 ~~I~avl~l~~le~~~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~tls~~LlLlVslGyGvVrp~L~~~~~kv~~l~v~ 335 (510)
++|+++++++++|+++++.+|++.|.+|.++.++.+++++++++|++++|+++++||+|||++||+|+++++|+++++++
T Consensus 81 ~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~~l~i~ 160 (295)
T PF06814_consen 81 YLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVLMLVIL 160 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCC--cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010440 336 YFVASEALEMFENLGNINDFS--GKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVL 413 (510)
Q Consensus 336 yfv~s~~l~v~~~v~~~~d~s--~~~~L~lvlpla~l~a~f~~WI~~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~l~~~vi 413 (510)
|++++.+.++.+..+...|.+ .+..+++++|+++++++|++||++||++|+++||+|||++||+|||+|+++++++++
T Consensus 161 ~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi~~sL~~t~~~lk~~~q~~KL~lyr~f~~~li~~v~ 240 (295)
T PF06814_consen 161 YFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWIFRSLSKTIRDLKARRQTAKLSLYRRFYNVLIAYVV 240 (295)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888776655543 356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh-heeecccccchhHHHHhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 010440 414 LSIAWIGFE-LYFNATDPLNELWQIAWIIPAFWALLAFILLVVICALWAPSRNPT 467 (510)
Q Consensus 414 ~s~~~i~~~-l~f~~~~~~~~~Wk~~W~i~~~w~~l~f~~~~~I~~LWRPt~~n~ 467 (510)
++++++.++ +.++..+..+++||++|+.+++|++++|+++++|+++|||++|||
T Consensus 241 ~~~i~~~~~~~~~~~~~~~~~~W~~~W~~~~~~~~l~~~~~~~i~~lwRPs~~n~ 295 (295)
T PF06814_consen 241 FSRIFVVLSSIIFNTSDSIEKPWKYQWFIEAFWELLYFVFLVAIMYLWRPSENNQ 295 (295)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHhHHHHHHHHHHHHHHHHHHheeCCCCCCc
Confidence 999988877 566777888999999999999999999999999999999999997
No 3
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=100.00 E-value=2e-41 Score=344.11 Aligned_cols=287 Identities=19% Similarity=0.325 Sum_probs=256.0
Q ss_pred ceeEEecccceEEEEEEEeCCCCCceEEEEEEEEEc---CCC---CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010440 175 SEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKN---PDG---YLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLW 248 (510)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C~~~~~~~~~~g~v~f~N---~~G---yLpa~e~pll~fY~~msi~Y~vl~~~W~~~~~k~r 248 (510)
..+|+++.+|.|.++++||.|.. ..++...++..| |+| ||||++.+++.+|..|+++|+..++.|.+.++|++
T Consensus 123 ~~~~~~kd~~~y~l~f~nc~~~~-~~sm~V~~~~~~~~~p~g~~dyl~ag~~~Lp~ly~~~sl~Yl~~~v~w~~l~~~sk 201 (440)
T KOG2569|consen 123 SHHYPLKDPGQYSLFFANCVPET-KGSMVVRVEMYNLLEPNGSRDYLSAGETSLPRLYFDFSLLYLDFLVFWCYLLKQSK 201 (440)
T ss_pred eEEecCCCCceEEEEEeeccccc-cceEEEEEEeeeccCCCCcccccccccccCchhHHHHHHHHHHhhhheeeeEeech
Confidence 67999999999999999998764 466777776665 777 99999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhheecccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccce
Q 010440 249 KDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFK 328 (510)
Q Consensus 249 ~~il~lq~~I~avl~l~~le~~~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~tls~~LlLlVslGyGvVrp~L~~~~~k 328 (510)
+.+++||.+|.+++.++.+..++...+|+++.++|. +.||.+..+|+.++|+.+.|..+.+++.||+++||.|.+++||
T Consensus 202 ~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g~-~~gw~vl~yI~~~lkg~llf~tivligTgwSflk~~l~dkekk 280 (440)
T KOG2569|consen 202 SVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTGT-VHGWAVLFYIFHFLKGVLLFTTIVLIGTGWSFLKPKLQDKEKK 280 (440)
T ss_pred HHHHHHHHHHHHHHhHcchHHHhhccceEEEEecCc-eeeeeehhhHHHHHhhhhheeEEEeeccCceeechhhccccce
Confidence 999999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred eEEehhHHHHHHHHHHHHHhhcCC---------CCCCcceehhhHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHhHH
Q 010440 329 VIFLGLVYFVASEALEMFENLGNI---------NDFSGKAKLFFVLPVTVLDV--CFILWIFSSLSRTLE-KLQMRRNLA 396 (510)
Q Consensus 329 v~~l~v~yfv~s~~l~v~~~v~~~---------~d~s~~~~L~lvlpla~l~a--~f~~WI~~sL~~Ti~-~Lk~~rq~~ 396 (510)
+++++++ +|+++|++++ ++|-.|..+|+++++.||++ ++++|+++||++|.+ |+|+.+|.+
T Consensus 281 v~mivip-------lqvlania~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~ 353 (440)
T KOG2569|consen 281 VLMIVIP-------LQVLANIASIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLI 353 (440)
T ss_pred EEEEEec-------HHHHHHhHheeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcc
Confidence 9999998 6677776553 45667778899999999988 899999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeecccccchhHHHHhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccCC
Q 010440 397 KLELYRKFTNALAACVLLSIAWIGFELYFNATDPLNELWQIAWIIPAFWALLAFILLVVICALWAPSRNPTRYAYSEEMG 476 (510)
Q Consensus 397 KL~mYr~f~~~l~~~vi~s~~~i~~~l~f~~~~~~~~~Wk~~W~i~~~w~~l~f~~~~~I~~LWRPt~~n~~~A~s~E~~ 476 (510)
||.+||+|+.++++++..+-+. ++ ...+.++ .|++|+..++.|++++++|+.++|+|||.++|+|+...+|.+
T Consensus 354 kL~lfrqfyi~vi~yiyftrIv-v~--~l~~~~~----fky~W~~~~a~E~at~aFy~l~gykFRP~~~~~Yf~vddeee 426 (440)
T KOG2569|consen 354 KLPLFRQFYIVVIGYIYFTRIV-VF--ALKTIAV----FKYQWLSFAAEEMATLAFYVLMGYKFRPVESNEYFVVDDEEE 426 (440)
T ss_pred cchHHHHHHhhhhhhhhhhhhh-hh--hhhhccc----eeeeeHHHHHHHHHHHHHHhhheeeeeecccCCccccCchhh
Confidence 9999999999988877776432 21 1233343 489999999999999999999999999999999999866543
Q ss_pred C
Q 010440 477 D 477 (510)
Q Consensus 477 ~ 477 (510)
+
T Consensus 427 e 427 (440)
T KOG2569|consen 427 E 427 (440)
T ss_pred h
Confidence 3
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.63 E-value=7.8e-14 Score=139.89 Aligned_cols=244 Identities=16% Similarity=0.198 Sum_probs=173.5
Q ss_pred eEEEEEEEEEcCC----CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010440 200 TMIKGRTVWKNPD----GYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRF--VQLWKDIIQLHYYITGVIALGMCEVAVWY 273 (510)
Q Consensus 200 ~~~~g~v~f~N~~----GyLpa~e~pll~fY~~msi~Y~vl~~~W~~~~--~k~r~~il~lq~~I~avl~l~~le~~~~~ 273 (510)
.+.+-++++.|++ .|+|++|.+.+++|.++.++|.++.++-.... .+.|+..+++.+++++.+++..+..++..
T Consensus 2 ~~~~y~i~l~N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~ 81 (257)
T PF10192_consen 2 LKIEYEIWLTNGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLNL 81 (257)
T ss_pred CceEEEEEEEeCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899986 59999999999999999999999988855444 55678899999999999999999999876
Q ss_pred HhhheecccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccc-ceeEEehhHHHHHHHHHHHHHhhcCC
Q 010440 274 FEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLT-FKVIFLGLVYFVASEALEMFENLGNI 352 (510)
Q Consensus 274 ~~y~~~N~~G~~~~~~~v~~~i~~a~k~tls~~LlLlVslGyGvVrp~L~~~~-~kv~~l~v~yfv~s~~l~v~~~v~~~ 352 (510)
.++..+..+|.......+.+.++.++.+.+...+++++|.||.+.|++++... .+...+.++|.++..++.+.++....
T Consensus 82 ih~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 161 (257)
T PF10192_consen 82 IHYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFYF 161 (257)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66666656666557889999999999999999999999999999999998543 34445566666666666666322111
Q ss_pred CCCC--cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee-ccc
Q 010440 353 NDFS--GKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELYFN-ATD 429 (510)
Q Consensus 353 ~d~s--~~~~L~lvlpla~l~a~f~~WI~~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~l~~~vi~s~~~i~~~l~f~-~~~ 429 (510)
+..+ ....-..-.++..+..+..+|...++.+|++ ++|+..|.+.|.+|...-. .|+......- ...
T Consensus 162 d~~~~~~~y~s~pGy~li~lri~~~~~F~~~~~~t~~---~~~~~~k~~Fy~~f~~~~~-------lWFl~~Pv~~~ia~ 231 (257)
T PF10192_consen 162 DPHSYLYFYDSWPGYILIALRIVLAIWFIYGLYQTIS---KEKDPEKRKFYLPFGIIFS-------LWFLSLPVIVIIAH 231 (257)
T ss_pred CcccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 1100 0001122233345666777888999999875 5788899999999987532 4443221110 011
Q ss_pred ccchhHHHHhHHHHHHHHHHHHHHH
Q 010440 430 PLNELWQIAWIIPAFWALLAFILLV 454 (510)
Q Consensus 430 ~~~~~Wk~~W~i~~~w~~l~f~~~~ 454 (510)
.+++.||++.+. .+...+.++.++
T Consensus 232 ~v~~~~R~kvv~-~~~~~~~~~~~~ 255 (257)
T PF10192_consen 232 FVDPWVREKVVT-GGNLLIQFIAYI 255 (257)
T ss_pred hccHHHHHHHHH-HHHHHHHHHHHH
Confidence 256778888764 555555555443
No 5
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=98.90 E-value=1.3e-08 Score=104.55 Aligned_cols=232 Identities=14% Similarity=0.162 Sum_probs=152.9
Q ss_pred CC-CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhheecccCCCcchHHH
Q 010440 213 GY-LPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITL 291 (510)
Q Consensus 213 Gy-Lpa~e~pll~fY~~msi~Y~vl~~~W~~~~~k~r~~il~lq~~I~avl~l~~le~~~~~~~y~~~N~~G~~~~~~~v 291 (510)
++ .+++|.++..+|..|.++|+++.++.+...+ |+.+|.|...+..+....++..+..+++-.+-+.|..-.-...
T Consensus 160 t~~fS~deqnlie~fll~llvY~vL~~iq~~av~---rkm~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~~~~ 236 (429)
T KOG4290|consen 160 TLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAVT---RKMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPKFFD 236 (429)
T ss_pred ccceeeccchHHHHHHHHHHHHHHHHHHHHHHHh---cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecC
Confidence 55 8999999999999999999999999887766 6788999999999999999888776666666555554345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccccccceeEEehhHHHHHHHHHHHHHhhcC------CCCCCcceehhhHH
Q 010440 292 WAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGN------INDFSGKAKLFFVL 365 (510)
Q Consensus 292 ~~~i~~a~k~tls~~LlLlVslGyGvVrp~L~~~~~kv~~l~v~yfv~s~~l~v~~~v~~------~~d~s~~~~L~lvl 365 (510)
.+.++.-..+.-..+||+..++||.|+|+.-.....-+.+-.++|..+-.++...+.... ......|..-
T Consensus 237 aaEvldisS~~~~~lLLi~LakGW~i~r~~~s~~~wds~m~wvf~~~f~~vL~~W~~tev~dv~hd~d~y~nwpG~---- 312 (429)
T KOG4290|consen 237 AAEVLDISSSLPAYLLLIWLAKGWVIFRVAASMSRWDSPMKWVFFTSFVFVLTPWFWTEVIDVMHDNDCYNNWPGE---- 312 (429)
T ss_pred HHHHHHHHhhHHHHHHHHHHhccceEEeehhhccccccchhhhhhhhhhhheeehhhcCceeeeechhhhhccchH----
Confidence 788999999999999999999999999998775322222213333322222222111110 1111222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee-cccccchhHHHHhHHHHH
Q 010440 366 PVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELYFN-ATDPLNELWQIAWIIPAF 444 (510)
Q Consensus 366 pla~l~a~f~~WI~~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~l~~~vi~s~~~i~~~l~f~-~~~~~~~~Wk~~W~i~~~ 444 (510)
-+.+++.++.+|....|+++++ .++.+.|++.|-+|..- .+.|+++..... ...++..-||+.=+ ...
T Consensus 313 ~viilRii~a~wflielr~~ik---~EhStkK~eFl~hfgag-------~ivWFishPi~aival~vS~~wR~kli-q~~ 381 (429)
T KOG4290|consen 313 VVIILRIIVAFWFLIELRVPIK---LEHSTKKCEFLSHFGAG-------QIVWFISHPISAIVALMVSSAWRNKLI-QTN 381 (429)
T ss_pred HHHHHHHHHHHHHHHHeeeehh---hhhHHHHHHHHHHhccc-------eEEEEEcccHHHHHHHHhhHHHhhcch-hcc
Confidence 1235677888999999999986 47788899999998862 223332211000 01223455666644 333
Q ss_pred HHHHHHHHHHHHhhhccc
Q 010440 445 WALLAFILLVVICALWAP 462 (510)
Q Consensus 445 w~~l~f~~~~~I~~LWRP 462 (510)
...-.++-++++--++.|
T Consensus 382 t~~~~~val~vl~~lfwp 399 (429)
T KOG4290|consen 382 TGMHGVVALTVLNMLFWP 399 (429)
T ss_pred cchhceehhhhhhcccCC
Confidence 334446666777777777
No 6
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=93.13 E-value=12 Score=38.52 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=63.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH-HHHHhhheecccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCccc--cccccc
Q 010440 247 LWKDIIQLHYYITGVIALGMCEVA-VWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGV--VRPTLG 323 (510)
Q Consensus 247 ~r~~il~lq~~I~avl~l~~le~~-~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~tls~~LlLlVslGyGv--Vrp~L~ 323 (510)
++++-..=|+++.+++.+..+-.- +..+.+..- +.....+-.++...--+..++-.|++.-+-.. -|.+++
T Consensus 78 ~~~~w~~EQk~~~~Ll~~lil~n~P~~~l~~~~~------~~~~~~l~~i~q~~F~~~Ll~FwL~~~~~~r~~~~r~~~~ 151 (298)
T PF06664_consen 78 SRRDWLLEQKWTFALLILLILYNNPFFWLSFFFN------SPFFLLLDDIFQSIFYAYLLLFWLVFFDSLRMQNERKNLK 151 (298)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhChHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCceE
Confidence 466788889999998888776442 222222210 11222333344333333333333333332222 111111
Q ss_pred cccceeEEehhHHHHHHHHHHHHHhhcCCCCC--Ccc------eehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010440 324 GLTFKVIFLGLVYFVASEALEMFENLGNINDF--SGK------AKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNL 395 (510)
Q Consensus 324 ~~~~kv~~l~v~yfv~s~~l~v~~~v~~~~d~--s~~------~~L~lvlpla~l~a~f~~WI~~sL~~Ti~~Lk~~rq~ 395 (510)
---.|+ +++++.+++..+....+......|. +.+ .....++-++...+ +++|+...+-++.++++.++..
T Consensus 152 ~y~~ki-~~v~~~~~~~~i~~~~~~~~~~~dP~~~~~~~~~~~~~~~~~~~l~~i~~-Y~l~ll~li~rs~~~i~~~~~~ 229 (298)
T PF06664_consen 152 FYWPKI-ILVGLFWLFLFIFDIWERGNQLKDPFYSIWVDDPGFNIAKAFIILAGICA-YFLYLLFLIIRSFSEIRNKRYF 229 (298)
T ss_pred EEhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccCccCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccHH
Confidence 101122 2344444444444444443222221 111 11222223333333 7889888887777766666654
No 7
>PRK11715 inner membrane protein; Provisional
Probab=74.18 E-value=13 Score=40.68 Aligned_cols=93 Identities=18% Similarity=0.321 Sum_probs=51.2
Q ss_pred CCceeeeeeeccCccccccceeEEecccceEEEEEE------------EeCCCCCceEEEEEEEEEcC-CCCCCCCCCcc
Q 010440 156 EWPRRIKAFFQGTNEETQISEEVEIERTGMYYLYFM------------YCDPQLKGTMIKGRTVWKNP-DGYLPGKMAPL 222 (510)
Q Consensus 156 ~~~~~~~~~f~~~~~~~~l~~~y~V~ktG~Y~v~~~------------~C~~~~~~~~~~g~v~f~N~-~GyLpa~e~pl 222 (510)
+||.+ +|.|+- +|.+.+|+.+|+--=+-. +|++..- ......|.|.+| +.|.-.+..
T Consensus 234 ~WphP---SF~G~f----LP~~R~It~~GF~A~W~is~l~r~~~q~~~~~~~~~~-~~~~~~V~~~~PVd~Y~~~~RA-- 303 (436)
T PRK11715 234 NWPHP---SFVGDF----LPAEREISESGFQAQWQVSHLARNYPQVFASGQDGNL-NLPAFGVSLIDPVDQYQKTERA-- 303 (436)
T ss_pred CCcCC---CCCCcc----CCCCCeeCCCCeeeEeechhhcCchhhhhhhcccccc-ccceeEEEEeccccHHHHHHHH--
Confidence 46544 455542 277789999998765432 2321100 124566777777 445433332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 010440 223 MTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGV 261 (510)
Q Consensus 223 l~fY~~msi~Y~vl~~~W~~~~~k~r~~il~lq~~I~av 261 (510)
.=|++|.|+-..++ ++++-..+ +..++|+||.+-++
T Consensus 304 -~KYgiLFI~LTF~~-fFlfE~~~-~~~iHpiQYlLVGl 339 (436)
T PRK11715 304 -VKYAILFIALTFAA-FFLFELLK-KLRIHPVQYLLVGL 339 (436)
T ss_pred -HhHHHHHHHHHHHH-HHHHHHhc-CceecHHHHHHHHH
Confidence 23666666544333 33344443 55699999987553
No 8
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=74.12 E-value=12 Score=40.81 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=46.5
Q ss_pred ceeEEecccceEEEEEEEeCCCC------------CceEEEEEEEEEcC-CCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 010440 175 SEEVEIERTGMYYLYFMYCDPQL------------KGTMIKGRTVWKNP-DGYLPGKMAPLMTFYGLMSLAYLVLGLAWF 241 (510)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C~~~~------------~~~~~~g~v~f~N~-~GyLpa~e~pll~fY~~msi~Y~vl~~~W~ 241 (510)
|.+.+|+++|+---+-.+--... .......-|++.+| +.|.-... -.=|++|+|+-..++ +++
T Consensus 239 P~~r~i~~~GF~A~W~v~~l~r~~~q~~~~~~~~~~~~~~~~gV~l~~Pvd~Y~~~~R---a~KYgiLFI~LTF~~-ffl 314 (430)
T PF06123_consen 239 PEEREITDSGFSAQWKVSHLARNYPQQWASDDNCPDLSASAFGVDLIEPVDHYQKSER---AVKYGILFIGLTFLA-FFL 314 (430)
T ss_pred CCCCccCCCCceeEeeehhhccchhhHhhhcccCcccccCceeEEEeccccHHHHHHH---HHHHHHHHHHHHHHH-HHH
Confidence 77889999998776644321100 01123456777777 34433332 233777776654443 233
Q ss_pred HHHHHhhhhhhHHHHHHHHH
Q 010440 242 LRFVQLWKDIIQLHYYITGV 261 (510)
Q Consensus 242 ~~~~k~r~~il~lq~~I~av 261 (510)
+-.. .++.++|+||.+-.+
T Consensus 315 fE~~-~~~~iHpiQY~LVGl 333 (430)
T PF06123_consen 315 FELL-SKLRIHPIQYLLVGL 333 (430)
T ss_pred HHHH-hcCcccHHHHHHHHH
Confidence 3333 355799999987653
No 9
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.37 E-value=61 Score=33.32 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=24.9
Q ss_pred hhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHH
Q 010440 362 FFVLPVTVLDV-----CFILWIFSSLSRTLEKLQMRRN----LAKLELYRKFTNA 407 (510)
Q Consensus 362 ~lvlpla~l~a-----~f~~WI~~sL~~Ti~~Lk~~rq----~~KL~mYr~f~~~ 407 (510)
++++|+.++.- +++.|.+-+--.....+|+-|+ .+-.-.|+-|..+
T Consensus 89 m~~iPlyf~~~~~w~rfl~~WlmF~~~tafi~~ka~rkp~~g~tpRlVYkwFl~l 143 (328)
T KOG1734|consen 89 MLFIPLYFFLYMQWYRFLFCWLMFCGFTAFITLKALRKPISGDTPRLVYKWFLFL 143 (328)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 56667766654 5677766554444445555443 2234455555543
No 10
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=55.54 E-value=16 Score=39.25 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=63.1
Q ss_pred eEEecccceE-EEEEEEeCCCC-C----ceEEEEEEEEEc--------CCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 010440 177 EVEIERTGMY-YLYFMYCDPQL-K----GTMIKGRTVWKN--------PDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFL 242 (510)
Q Consensus 177 ~y~V~ktG~Y-~v~~~~C~~~~-~----~~~~~g~v~f~N--------~~GyLpa~e~pll~fY~~msi~Y~vl~~~W~~ 242 (510)
+..+++||-| ..+++-|.--. . --.+.--++|+- ++|++.+.+.|++.|+-.+.++..-+...|+.
T Consensus 296 ~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIv 375 (440)
T KOG2569|consen 296 SIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIV 375 (440)
T ss_pred heeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhh
Confidence 4566665544 44444442100 0 023455678887 89999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHH
Q 010440 243 RFVQLWKDIIQLHYYITG 260 (510)
Q Consensus 243 ~~~k~r~~il~lq~~I~a 260 (510)
.+.+.+....++|+..-+
T Consensus 376 v~~l~~~~~fky~W~~~~ 393 (440)
T KOG2569|consen 376 VFALKTIAVFKYQWLSFA 393 (440)
T ss_pred hhhhhhccceeeeeHHHH
Confidence 999999999999987655
No 11
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=54.15 E-value=1.6e+02 Score=26.26 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhheecccCCCcchHHHHHHHHHHHHHHHH
Q 010440 250 DIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVS 304 (510)
Q Consensus 250 ~il~lq~~I~avl~l~~le~~~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~tls 304 (510)
+.+|-.--+..++++..++.+++..++-+.|.+|.-......+..++-++--.+.
T Consensus 49 ~~l~~~~~~~~I~~lAvvQi~VqL~yFLHm~~k~~~~~~~~if~gi~va~~tv~a 103 (110)
T TIGR02908 49 DEIDKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVPAQFIYGGVFVTMLVVLA 103 (110)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHheeeCCCccchHHHHHHHHHHHHHHHHHH
Confidence 3557777788888999999999988888998777633233444444444433333
No 12
>PF09437 Pombe_5TM: Pombe specific 5TM protein; InterPro: IPR018291 This entry represents a group of proteins containing five transmembrane regions. These proteins are found exclusively in Schizosaccharomyces pombe (Fission yeast).
Probab=52.19 E-value=5.5 Score=38.04 Aligned_cols=139 Identities=17% Similarity=0.105 Sum_probs=79.5
Q ss_pred eeEEecccceEEEEEEEeCCCCC--ceEEEEEE---EEEcCC-----CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 010440 176 EEVEIERTGMYYLYFMYCDPQLK--GTMIKGRT---VWKNPD-----GYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFV 245 (510)
Q Consensus 176 ~~y~V~ktG~Y~v~~~~C~~~~~--~~~~~g~v---~f~N~~-----GyLpa~e~pll~fY~~msi~Y~vl~~~W~~~~~ 245 (510)
...-|++||-||+..-.-.-+.. +.+.-|.. .-.|.+ .|.+-.|.+-.. +...+|+.-|.
T Consensus 36 ~~i~I~~T~sYCvAar~mtmdgaefnldlmgysvsedqinndeigiwnyisvaemggvl----------lflsywiwtcl 105 (256)
T PF09437_consen 36 KTILINETGSYCVAARPMTMDGAEFNLDLMGYSVSEDQINNDEIGIWNYISVAEMGGVL----------LFLSYWIWTCL 105 (256)
T ss_pred EEEEecCccceEEEEeeeecccceecccccccccchhhcCccceeeeeEEEhhhcCcee----------ehhHHHHHHHH
Confidence 45778999999998654321111 11111111 111211 255555544322 23457999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHH-HHHHHHHhhheecccCCCcchHHH--HHHHHHHHHHHHHHHHHHHHHhCcccccccc
Q 010440 246 QLWKDIIQLHYYITGVIALGMC-EVAVWYFEYANFNSTGSRPMGITL--WAVTFTSVKKTVSRLLLLAVSMGYGVVRPTL 322 (510)
Q Consensus 246 k~r~~il~lq~~I~avl~l~~l-e~~~~~~~y~~~N~~G~~~~~~~v--~~~i~~a~k~tls~~LlLlVslGyGvVrp~L 322 (510)
.+.+-++|-|+.+..-+++... +.+-..++=..+...-. .--.+ +..+.+.+|.-+-|+.++--++|.|++|..-
T Consensus 106 hfskiifpaqkviClYIflfalnqtlqecieeyvFsseci--kyrqFysvyeiidFlRTnfyrlfviycalgfgitRTvp 183 (256)
T PF09437_consen 106 HFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSECI--KYRQFYSVYEIIDFLRTNFYRLFVIYCALGFGITRTVP 183 (256)
T ss_pred hHhheecccceEEEEEeehhhcChhHHHHHHHheeeeEEE--EecccccHHHHHHHHHhhhhhhheeeecccccceeeec
Confidence 9999999999988776655443 33322222111111100 00112 2467889999999999999999999987543
Q ss_pred cccc
Q 010440 323 GGLT 326 (510)
Q Consensus 323 ~~~~ 326 (510)
.-.|
T Consensus 184 Kylm 187 (256)
T PF09437_consen 184 KYLM 187 (256)
T ss_pred ceEE
Confidence 3334
No 13
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=45.24 E-value=3e+02 Score=29.01 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=17.1
Q ss_pred ehhhHHHHHHHHH---HHHHHHHHHHHHHH
Q 010440 360 KLFFVLPVTVLDV---CFILWIFSSLSRTL 386 (510)
Q Consensus 360 ~L~lvlpla~l~a---~f~~WI~~sL~~Ti 386 (510)
.-|+.+|+.++.. .|.+--+.+|.+.-
T Consensus 180 ~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir 209 (328)
T PF01534_consen 180 RGFVLAPLFIYLLIGTVFLLAGFVSLFRIR 209 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3578889877665 56666666654333
No 14
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=44.74 E-value=7.3 Score=40.13 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 010440 442 PAFWALLAFILLVVICAL 459 (510)
Q Consensus 442 ~~~w~~l~f~~~~~I~~L 459 (510)
+.+|.+++.++++.+-+-
T Consensus 169 dL~WL~LFlaiLIWlY~H 186 (381)
T PF05297_consen 169 DLYWLLLFLAILIWLYVH 186 (381)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 468888777777666553
No 15
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=43.15 E-value=2.7e+02 Score=25.60 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=47.2
Q ss_pred EEEEcCCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010440 206 TVWKNPDGYLPGKMA-PLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWY 273 (510)
Q Consensus 206 v~f~N~~GyLpa~e~-pll~fY~~msi~Y~vl~~~W~~~~~k~r~~il~lq~~I~avl~l~~le~~~~~ 273 (510)
.+.+|.-|-+-|--. -.....|..+.+..++.+.|...+.++|+.-.+..+++..++.+..+..++..
T Consensus 41 ~~~~N~~G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l 109 (171)
T PF13491_consen 41 AEVHNLMGILGAYLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLSL 109 (171)
T ss_pred CCCcCCCChHhHHHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 456777664433311 23357788888888899999999999887666777777777777766666653
No 16
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=42.63 E-value=1.4e+02 Score=36.56 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 010440 437 IAWIIPAFWALLAFILLVVICALWAPSRNPTR 468 (510)
Q Consensus 437 ~~W~i~~~w~~l~f~~~~~I~~LWRPt~~n~~ 468 (510)
.+|+...+|-....++++++..++||......
T Consensus 201 ~~~~~~~~~~~~~~~l~~a~~~l~r~~~~~~~ 232 (1094)
T PRK02983 201 PVWVNALLGLFGAAALIAALIVLFRSQRADNA 232 (1094)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 46777778877767777888888999776644
No 17
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=38.74 E-value=38 Score=33.87 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010440 399 ELYRKFTNALAACVLLSIAW 418 (510)
Q Consensus 399 ~mYr~f~~~l~~~vi~s~~~ 418 (510)
++.|-+..+++++++-.++.
T Consensus 7 ~~~~~~~~illg~~iGg~~G 26 (248)
T PF11368_consen 7 RILRFLLLILLGGLIGGFIG 26 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666777777666655443
No 18
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=34.48 E-value=5.5e+02 Score=26.65 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=19.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 219 MAPLMTFYGLMSLAYLVLGLAWFLRFVQ 246 (510)
Q Consensus 219 e~pll~fY~~msi~Y~vl~~~W~~~~~k 246 (510)
|.-.|.+..+-++.+++.|++|+..+-.
T Consensus 18 eq~~L~~Si~~tvi~A~~GIi~GL~~gS 45 (314)
T COG3965 18 EQLYLRISIAGTVIFAAFGIIWGLLSGS 45 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455667777777888888888775543
No 19
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=30.45 E-value=4.3e+02 Score=25.91 Aligned_cols=25 Identities=0% Similarity=-0.063 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 222 LMTFYGLMSLAYLVLGLAWFLRFVQ 246 (510)
Q Consensus 222 ll~fY~~msi~Y~vl~~~W~~~~~k 246 (510)
...+...+.++..+..-++.++.|+
T Consensus 58 ~~~lk~s~~~g~~~~~P~i~yqiw~ 82 (215)
T TIGR00945 58 FTYIKLSLIVGIILSSPVILYQIWA 82 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777788888886
No 20
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=29.58 E-value=5.8e+02 Score=25.76 Aligned_cols=25 Identities=4% Similarity=-0.033 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 222 LMTFYGLMSLAYLVLGLAWFLRFVQ 246 (510)
Q Consensus 222 ll~fY~~msi~Y~vl~~~W~~~~~k 246 (510)
...+...+.++..+..-++.++.|+
T Consensus 79 ~~~ikls~~~g~~~a~P~i~yqiw~ 103 (249)
T CHL00182 79 FSSIKISFYTGLLISSPFIIYQIIL 103 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777788888876
No 21
>PF06900 DUF1270: Protein of unknown function (DUF1270); InterPro: IPR009682 This entry is represented by Bacteriophage 92, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.
Probab=28.84 E-value=1.8e+02 Score=22.43 Aligned_cols=44 Identities=39% Similarity=0.666 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheeecccccchhHHHHhHHHHHHHHHHHHHH
Q 010440 399 ELYRKFTNALAACVLLSIAWIGFELYFNATDPLNELWQIAWIIPAFWALLAFILL 453 (510)
Q Consensus 399 ~mYr~f~~~l~~~vi~s~~~i~~~l~f~~~~~~~~~Wk~~W~i~~~w~~l~f~~~ 453 (510)
+.|+.+..+.++-++++++...+ +||+ +.|-+-++-.++.|+++
T Consensus 3 ~~ykSylIA~l~ftvlsi~L~~~-lYFT----------TA~~iAa~~sI~~Fi~~ 46 (53)
T PF06900_consen 3 NTYKSYLIANLCFTVLSIALMPF-LYFT----------TAWGIAAFASIATFIFY 46 (53)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHH----------HHHHHHHHHHHHHHHHH
Confidence 35777777777666666654432 3444 36766666666666544
No 22
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.55 E-value=6.2e+02 Score=25.49 Aligned_cols=33 Identities=9% Similarity=0.232 Sum_probs=22.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 386 LEKLQMRRNLAKLELYRKFTNALAACVLLSIAW 418 (510)
Q Consensus 386 i~~Lk~~rq~~KL~mYr~f~~~l~~~vi~s~~~ 418 (510)
+++..++-|.++-.||+-+..++++.+++.++.
T Consensus 136 vK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 136 VKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444556777889999998887766666554
No 23
>CHL00043 cemA envelope membrane protein
Probab=25.54 E-value=61 Score=33.12 Aligned_cols=41 Identities=29% Similarity=0.543 Sum_probs=25.9
Q ss_pred HHHhhcCCCCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 345 MFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTL 386 (510)
Q Consensus 345 v~~~v~~~~d~s~~~~L~lvlpla~l~a~f~~WI~~sL~~Ti 386 (510)
+.++.|-.++-..-..+...+|+ ++|++|=+|||+.|++..
T Consensus 209 i~~hfGl~~n~~~I~lfVatfPV-iLDtiFKYWIFRyLNRiS 249 (261)
T CHL00043 209 IYKHFGFAHNDQIISLLVSTFPV-ILDTIFKYWIFRYLNRVS 249 (261)
T ss_pred HHHhcCCCcccchHHHHHHhhhH-HHHHHHHHHHHhhccCCC
Confidence 44555543332111223455677 699999999999998654
No 24
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=25.41 E-value=5.3e+02 Score=26.47 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecccccchhHHHHhH
Q 010440 361 LFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELYFNATDPLNELWQIAWI 440 (510)
Q Consensus 361 L~lvlpla~l~a~f~~WI~~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~l~~~vi~s~~~i~~~l~f~~~~~~~~~Wk~~W~ 440 (510)
+.+++|-. .|.+.-+..+++..++|+..|.. +++.++..+.+..+++++|-+.++..++.+.-...+|..|.
T Consensus 14 ~~l~vPn~----lFllfL~~~~~~s~~KL~~~~Sp----I~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d~~lW~ 85 (261)
T PF10160_consen 14 VVLLVPNL----LFLLFLAWRLRKSRRKLRHTRSP----IFITYYALLWVVALLNLARCFVSMWVCSPGKGGIADKVLWN 85 (261)
T ss_pred HHHHHHHH----HHHHHHHHhchHHHHHHhcCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHH
Confidence 45555643 34444455567777777766665 78888888888888899998877665554443445677776
Q ss_pred HHH
Q 010440 441 IPA 443 (510)
Q Consensus 441 i~~ 443 (510)
+.-
T Consensus 86 ilr 88 (261)
T PF10160_consen 86 ILR 88 (261)
T ss_pred HHH
Confidence 653
No 25
>COG4393 Predicted membrane protein [Function unknown]
Probab=25.11 E-value=8.7e+02 Score=26.02 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=31.5
Q ss_pred HhhcCCCCCCcceehhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 347 ENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSR-----TLEKLQMRRNLAKLELYRKFTNALAACVLLSIA 417 (510)
Q Consensus 347 ~~v~~~~d~s~~~~L~lvlpla~l~a~f~~WI~~sL~~-----Ti~~Lk~~rq~~KL~mYr~f~~~l~~~vi~s~~ 417 (510)
.+++-.++.+.+.+.+...-++|+. -.+|.-.|..+ +...+..||+.+|.+.-+|+.-.-.++++++++
T Consensus 189 sfV~k~~n~~~f~iyi~~~ilaiif--l~flf~~srkrhi~~q~~~aI~krkk~a~~~n~~rl~sl~f~s~lvvf~ 262 (405)
T COG4393 189 SFVAKFENKSTFYIYILFTILAIIF--LLFLFKDSRKRHIVTQKNNAILKRKKAALKNNKHRLLSLAFFSILVVFS 262 (405)
T ss_pred HHHhhhccccchHHHHHHHHHHHHH--HHHHhHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444445544443333332334433 33344444433 333455566666666666655444444444433
No 26
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.62 E-value=4.4e+02 Score=33.11 Aligned_cols=42 Identities=17% Similarity=0.088 Sum_probs=22.1
Q ss_pred EEEcCCCCCCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010440 207 VWKNPDGYLPGKMAP-LMTFYGLMSLAYLVLGLAWFLRFVQLW 248 (510)
Q Consensus 207 ~f~N~~GyLpa~e~p-ll~fY~~msi~Y~vl~~~W~~~~~k~r 248 (510)
..+|.-|-+.|--.- +.-++|+++.+..++++++.+.+++++
T Consensus 59 ~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~LL~~~a~~l~R~r 101 (1355)
T PRK10263 59 PIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQ 101 (1355)
T ss_pred ccccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 356777766554333 334555555555544444444545543
No 27
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=24.42 E-value=58 Score=32.66 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=27.0
Q ss_pred HHHhhcCCCCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 345 MFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTL 386 (510)
Q Consensus 345 v~~~v~~~~d~s~~~~L~lvlpla~l~a~f~~WI~~sL~~Ti 386 (510)
+.++.|-.++-..-..+...+|+ ++|++|=+|||+.|++..
T Consensus 178 ~~~hfG~~~n~~~i~~fvatfPV-iLDt~fKyWIFryLnriS 218 (230)
T PF03040_consen 178 ILEHFGLPENEQFISLFVATFPV-ILDTIFKYWIFRYLNRIS 218 (230)
T ss_pred HHHhcCCCcccchhhhhhhhhhH-HHHHHHHHhhhcccCCCC
Confidence 44555544332222234566788 699999999999997653
No 28
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.06 E-value=98 Score=24.66 Aligned_cols=18 Identities=17% Similarity=0.456 Sum_probs=14.3
Q ss_pred HHHHHHHhhhcccCCCCC
Q 010440 450 FILLVVICALWAPSRNPT 467 (510)
Q Consensus 450 f~~~~~I~~LWRPt~~n~ 467 (510)
.++++++.+.+||.....
T Consensus 20 l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 20 LFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHhcccchhh
Confidence 457788999999998664
No 29
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=21.95 E-value=8.6e+02 Score=24.82 Aligned_cols=26 Identities=4% Similarity=-0.161 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 221 PLMTFYGLMSLAYLVLGLAWFLRFVQ 246 (510)
Q Consensus 221 pll~fY~~msi~Y~vl~~~W~~~~~k 246 (510)
=..+++..+.+..++..-++.++.|+
T Consensus 71 ~~~~ik~a~~~gl~~a~P~i~yq~w~ 96 (255)
T COG0805 71 FFTYIKLALFAGLLLALPVILYQLWA 96 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888899999999997
No 30
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=21.85 E-value=79 Score=34.48 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=25.8
Q ss_pred HHHhhcCCCCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 345 MFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTL 386 (510)
Q Consensus 345 v~~~v~~~~d~s~~~~L~lvlpla~l~a~f~~WI~~sL~~Ti 386 (510)
+.++.|-.++-..-..+...+|+ ++|++|=+|||+.|++.-
T Consensus 370 i~~HfGl~~n~~~I~lFVaTfPV-iLDTiFKYWIFRyLNRiS 410 (422)
T PRK02507 370 IARHFGLPENRNFIFLFIATFPV-ILDTIFKYWIFRYLNRIS 410 (422)
T ss_pred HHHhcCCCcccchHHHHHhhhhH-HHHHHHHHHHHhhccCCC
Confidence 44555543331111223456677 699999999999997643
No 31
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=20.93 E-value=8.8e+02 Score=24.56 Aligned_cols=24 Identities=0% Similarity=-0.058 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 223 MTFYGLMSLAYLVLGLAWFLRFVQ 246 (510)
Q Consensus 223 l~fY~~msi~Y~vl~~~W~~~~~k 246 (510)
..+...+.+...+..-+|.++.|+
T Consensus 70 ~~lk~sl~~g~~la~P~ilyqiw~ 93 (258)
T PRK10921 70 TPIKLTFMVSLILSAPVILYQVWA 93 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677788888886
No 32
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=20.75 E-value=6.4e+02 Score=23.86 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHH-HHhhheecccCCCcchHHHHHHHHHHHHHHH
Q 010440 226 YGLMSLAYLVLGLAWFLRFV-QLWKDIIQLHYYITGVIALGMCEVAVW-YFEYANFNSTGSRPMGITLWAVTFTSVKKTV 303 (510)
Q Consensus 226 Y~~msi~Y~vl~~~W~~~~~-k~r~~il~lq~~I~avl~l~~le~~~~-~~~y~~~N~~G~~~~~~~v~~~i~~a~k~tl 303 (510)
+...+..|++.|..|..... +-.+|- +-+|+.++.+...+..+.. |-...+ +++- |+. ..|..+
T Consensus 6 ~i~iS~ifa~~G~~~llf~l~~g~~dw--il~wvgvlmaylSL~~li~Ly~~~ty-~k~~--~k~---------l~kt~~ 71 (161)
T PF13042_consen 6 NIMISFIFAVGGMIWLLFNLFMGGGDW--ILSWVGVLMAYLSLYILIDLYCKNTY-DKKF--SKV---------LIKTNV 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHHHHHHHhcccch-HHHH--HHH---------HHHHHH
Confidence 34678899999999987766 444442 3567788777777666654 322211 1110 111 113333
Q ss_pred HHHHHHHHHhCcccccccccc
Q 010440 304 SRLLLLAVSMGYGVVRPTLGG 324 (510)
Q Consensus 304 s~~LlLlVslGyGvVrp~L~~ 324 (510)
--+-+.+.+.=.||+.+.+++
T Consensus 72 iSF~~avLGiifgI~~qll~~ 92 (161)
T PF13042_consen 72 ISFNFAVLGIIFGIIHQLLGK 92 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 333444556667888888886
Done!