Query 010440
Match_columns 510
No_of_seqs 201 out of 411
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eiy_A Adenosine receptor A2A/ 28.5 4.2E+02 0.014 25.8 17.1 27 362-389 210-236 (447)
2 4b4a_A TATC, SEC-independent p 28.0 1.2E+02 0.0041 29.3 7.0 26 221-246 61-86 (249)
3 2z73_A Rhodopsin; visual pigme 21.7 5.8E+02 0.02 25.0 15.5 24 364-388 210-233 (448)
4 3rko_A NADH-quinone oxidoreduc 18.9 4.8E+02 0.016 23.0 9.3 60 252-323 64-124 (147)
5 3eml_A Human adenosine A2A rec 16.9 7.3E+02 0.025 24.2 18.6 22 362-384 200-221 (488)
6 1pi7_A VPU protein, U ORF prot 16.9 1.8E+02 0.0062 19.8 4.0 25 226-250 8-32 (36)
7 3odu_A C-X-C chemokine recepto 16.5 3.5E+02 0.012 26.9 8.2 21 363-384 218-238 (502)
8 1rja_A Tyrosine-protein kinase 13.3 2.3E+02 0.0077 22.6 4.6 42 141-189 23-66 (100)
9 1i3z_A EWS/FLI1 activated tran 13.2 2.3E+02 0.0078 22.6 4.6 41 142-189 24-66 (103)
10 2cs0_A Hematopoietic SH2 domai 11.4 2.2E+02 0.0075 23.6 4.1 17 140-156 34-50 (119)
No 1
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=28.53 E-value=4.2e+02 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 362 FFVLPVTVLDVCFILWIFSSLSRTLEKL 389 (510)
Q Consensus 362 ~lvlpla~l~a~f~~WI~~sL~~Ti~~L 389 (510)
..++|++++ .+.|.-|+..+++..++.
T Consensus 210 ~~~lP~~ii-~~~y~~I~~~l~~~~~~~ 236 (447)
T 4eiy_A 210 CVLVPLLLM-LGVYLRIFLAARRQLADL 236 (447)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhhh
Confidence 456777543 455667777777665443
No 2
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=27.96 E-value=1.2e+02 Score=29.26 Aligned_cols=26 Identities=4% Similarity=0.194 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 221 PLMTFYGLMSLAYLVLGLAWFLRFVQ 246 (510)
Q Consensus 221 pll~fY~~msi~Y~vl~~~W~~~~~k 246 (510)
=..++...+.....+..-+|.++.|+
T Consensus 61 f~~~lkvs~~~g~~~a~P~ilyQiw~ 86 (249)
T 4b4a_A 61 LFILIKISLAVGFIIASPVILYQFWR 86 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778888899999986
No 3
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=21.74 E-value=5.8e+02 Score=25.04 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010440 364 VLPVTVLDVCFILWIFSSLSRTLEK 388 (510)
Q Consensus 364 vlpla~l~a~f~~WI~~sL~~Ti~~ 388 (510)
++|++ +.++.+.-|+..+++..++
T Consensus 210 ~lP~~-ii~~~y~~I~~~l~~~~~~ 233 (448)
T 2z73_A 210 FGPIL-IIFFCYFNIVMSVSNHEKE 233 (448)
T ss_dssp HHHHH-HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44543 2334455566666655443
No 4
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=18.94 E-value=4.8e+02 Score=23.02 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHhhheecccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Q 010440 252 IQLHYYITGVIALGM-CEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLG 323 (510)
Q Consensus 252 l~lq~~I~avl~l~~-le~~~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~tls~~LlLlVslGyGvVrp~L~ 323 (510)
..+|+|+.|++.+-. +|.++-+-.-...+..| +. ..-..+.|+++|++++=|---+-.|.
T Consensus 64 FsirFfLiAilFlIFDvEi~~L~Pwa~~~~~~~-----~~-------~~~~~~~Fl~iL~~Gl~yEW~~GaL~ 124 (147)
T 3rko_A 64 LSAKFYLVAMFFVIFDVEALYLFAWSTSIRESG-----WV-------GFVEAAIFIFVLLAGLVYLVRIGALD 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTH-----HH-------HHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HH-------HHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 789999999888877 89988543212222221 11 11224567777777776655555554
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=16.94 E-value=7.3e+02 Score=24.24 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 010440 362 FFVLPVTVLDVCFILWIFSSLSR 384 (510)
Q Consensus 362 ~lvlpla~l~a~f~~WI~~sL~~ 384 (510)
..++|++ +..+.|..|+..+++
T Consensus 200 ~~~~P~~-ii~~~y~~I~~~l~~ 221 (488)
T 3eml_A 200 CVLVPLL-LMLGVYLRIFLAARR 221 (488)
T ss_dssp HTHHHHH-HHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 3455664 334556667776643
No 6
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=16.89 E-value=1.8e+02 Score=19.84 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 010440 226 YGLMSLAYLVLGLAWFLRFVQLWKD 250 (510)
Q Consensus 226 Y~~msi~Y~vl~~~W~~~~~k~r~~ 250 (510)
-..+.++..+..+.|.+.+..+||.
T Consensus 8 ivalivalIiaIVVWtiv~ieYrk~ 32 (36)
T 1pi7_A 8 IVALVVAIIIAIVVWSIVIIEGRGG 32 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888999998888864
No 7
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=16.47 E-value=3.5e+02 Score=26.88 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 010440 363 FVLPVTVLDVCFILWIFSSLSR 384 (510)
Q Consensus 363 lvlpla~l~a~f~~WI~~sL~~ 384 (510)
.++|+++ ..+.|.-|+..+++
T Consensus 218 ~~~p~~i-i~~~y~~I~~~l~~ 238 (502)
T 3odu_A 218 LILPGIV-ILSCYCIIISKLSH 238 (502)
T ss_dssp THHHHHH-HHHHHHHHHHHGGG
T ss_pred HHHHHHH-HHHHHHHHHHHHhh
Confidence 4556643 34556667776654
No 8
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=13.28 E-value=2.3e+02 Score=22.60 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=24.3
Q ss_pred CCCCCEEecCCCCCCCCceeeeeeeccCccccccceeEEecc--cceEEEE
Q 010440 141 CSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIER--TGMYYLY 189 (510)
Q Consensus 141 C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~l~~~y~V~k--tG~Y~v~ 189 (510)
+.+|.|+++++.+++.- ..+.+.. ++. ..+|.|.+ .|.|++.
T Consensus 23 ~~~G~FLVR~S~~~~g~-~~LSv~~--~~~----v~H~~I~~~~~g~~~l~ 66 (100)
T 1rja_A 23 NATGAFLIRVSEKPSAD-YVLSVRD--TQA----VRHYKIWRRAGGRLHLN 66 (100)
T ss_dssp CSSCCEEEEECSSSSSC-EEEEECT--TSS----CEEEEEEECSSSCEEEE
T ss_pred CCCCEEEEEeCCCCCCC-EEEEEEE--CCE----EEEEEEEEcCCCcEEEC
Confidence 66899999988665442 1222221 111 35666654 6877764
No 9
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=13.23 E-value=2.3e+02 Score=22.63 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=24.2
Q ss_pred CCCCEEecCCCCCCCCceeeeeeeccCccccccceeEEec--ccceEEEE
Q 010440 142 SVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIE--RTGMYYLY 189 (510)
Q Consensus 142 ~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~l~~~y~V~--ktG~Y~v~ 189 (510)
.+|.|+++++...+.. ..+.+...+ . ..+|.|. +.|.|++-
T Consensus 24 ~~G~FLVR~S~~~~g~-~~LSv~~~~--~----v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 24 VDGNFLIRDSESVPGA-LCLCVSFKK--L----VYSYRIFREKHGYYRIE 66 (103)
T ss_dssp STTEEEEEECSSSTTC-EEEEEECSS--S----EEEEEEEECTTSCEEEC
T ss_pred CCceEEEEeCCCCCCC-EEEEEEECC--E----EEEEEEEECCCCeEEEe
Confidence 6799999988665542 222222211 1 3566675 47888764
No 10
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=11.41 E-value=2.2e+02 Score=23.65 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=12.9
Q ss_pred CCCCCCEEecCCCCCCC
Q 010440 140 SCSVGEVIIHVDPENHE 156 (510)
Q Consensus 140 ~C~~g~~Ii~~~~~~~~ 156 (510)
.+.+|.|++|++...+.
T Consensus 34 ~~~~G~FLVR~S~~~~~ 50 (119)
T 2cs0_A 34 SQPLGSFLIRVSHSHVG 50 (119)
T ss_dssp TSCTTCEEEEECSSSSS
T ss_pred CCCCCEEEEEecCCCCC
Confidence 35679999998866655
Done!