Query 010440
Match_columns 510
No_of_seqs 201 out of 411
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 06:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010440.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010440hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1alya_ b.22.1.1 (A:) Extracel 23.5 59 0.0043 26.3 5.8 37 177-213 45-85 (146)
2 d1i3za_ d.93.1.1 (A:) Ews/fli1 14.5 1E+02 0.0073 23.1 4.9 42 141-189 23-66 (103)
3 d1a81a1 d.93.1.1 (A:9-137) Syk 13.9 69 0.005 25.5 3.8 18 139-156 24-41 (129)
4 d1kxga_ b.22.1.1 (A:) Soluble 13.5 1.5E+02 0.011 23.7 6.0 36 175-212 41-76 (144)
5 d1m56c_ f.25.1.1 (C:) Bacteria 13.0 4E+02 0.029 23.1 11.1 59 222-280 131-189 (265)
6 d1lghb_ f.3.1.1 (B:) Light-har 11.7 95 0.0069 20.4 3.2 8 455-462 34-41 (43)
7 d1rpya_ d.93.1.1 (A:) Adaptor 11.1 84 0.0061 22.7 3.2 15 139-153 25-39 (86)
8 d1xu1a_ b.22.1.1 (A:) A prolif 10.3 78 0.0057 25.3 3.0 20 175-194 39-58 (137)
9 d1rjaa_ d.93.1.1 (A:) Tyrosine 9.6 1.6E+02 0.012 21.8 4.5 14 143-156 25-38 (100)
10 d1blja_ d.93.1.1 (A:) P55 Blk 9.4 1.9E+02 0.014 21.8 5.0 18 139-156 31-48 (114)
No 1
>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.51 E-value=59 Score=26.35 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=25.0
Q ss_pred eEEecccceEEEEEEEeC----CCCCceEEEEEEEEEcCCC
Q 010440 177 EVEIERTGMYYLYFMYCD----PQLKGTMIKGRTVWKNPDG 213 (510)
Q Consensus 177 ~y~V~ktG~Y~v~~~~C~----~~~~~~~~~g~v~f~N~~G 213 (510)
...|+++|+|.||...+- +......+...+..+++.+
T Consensus 45 ~L~V~~~G~Y~VYsQv~f~~~~~~~~~~~~~~~v~~~~~~~ 85 (146)
T d1alya_ 45 QLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR 85 (146)
T ss_dssp EEEESSCEEEEEEEEEEEEECTTTSCSSEEEEEEEECCTTS
T ss_pred EEEeCCCeEEEEEEEEEEeccCCCCCceeEEEEEEEEcCCC
Confidence 589999999999965532 2222345677777777654
No 2
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.51 E-value=1e+02 Score=23.09 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCCCCEEecCCCCCCCCceeeeeeeccCccccccceeEEe--cccceEEEE
Q 010440 141 CSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEI--ERTGMYYLY 189 (510)
Q Consensus 141 C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~l~~~y~V--~ktG~Y~v~ 189 (510)
...|.|++|++.+++.. ..+.+...+ . ..+|.| .+.|.|++.
T Consensus 23 ~~~G~FLVR~S~~~~g~-~~LSv~~~~--~----v~H~~I~~~~~g~~~~~ 66 (103)
T d1i3za_ 23 GVDGNFLIRDSESVPGA-LCLCVSFKK--L----VYSYRIFREKHGYYRIE 66 (103)
T ss_dssp CSTTEEEEEECSSSTTC-EEEEEECSS--S----EEEEEEEECTTSCEEEC
T ss_pred CCCCeEEEEecCCCCCC-EEEEEEeCC--e----EEEEEeEEcCCCcEEEe
Confidence 35699999988776652 223222221 1 345556 457777754
No 3
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.93 E-value=69 Score=25.51 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=13.6
Q ss_pred CCCCCCCEEecCCCCCCC
Q 010440 139 GSCSVGEVIIHVDPENHE 156 (510)
Q Consensus 139 g~C~~g~~Ii~~~~~~~~ 156 (510)
..|..|.|++|++.+.+.
T Consensus 24 ~g~~dG~FLVR~S~~~~g 41 (129)
T d1a81a1 24 GGMSDGLYLLRQSRNYLG 41 (129)
T ss_dssp TTCCTTEEEEEECSSSTT
T ss_pred cCCCCccEEEEccCCCCc
Confidence 457789999998766554
No 4
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.48 E-value=1.5e+02 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=22.9
Q ss_pred ceeEEecccceEEEEEEEeCCCCCceEEEEEEEEEcCC
Q 010440 175 SEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPD 212 (510)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C~~~~~~~~~~g~v~f~N~~ 212 (510)
..+..|+++|+|.||...+-.+. ..-.+...+++..
T Consensus 41 ~g~L~V~~~GlYfVYsQV~F~~~--~~~lsh~v~~~~~ 76 (144)
T d1kxga_ 41 ENKILVKETGYFFIYGQVLYTDK--TYAMGHLIQRKKV 76 (144)
T ss_dssp TTEEEECSCEEEEEEEEEEECCC--SSEEEEEEEEECS
T ss_pred CCEEEEccceEEEEEEEEEEeCC--CcccceEEEEEec
Confidence 45789999999999976654321 1234455555543
No 5
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.01 E-value=4e+02 Score=23.07 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhheec
Q 010440 222 LMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFN 280 (510)
Q Consensus 222 ll~fY~~msi~Y~vl~~~W~~~~~k~r~~il~lq~~I~avl~l~~le~~~~~~~y~~~N 280 (510)
.+|+--...++-....+.|.....++++.-.....++...++++.+=..+.+.+|.+..
T Consensus 131 ~l~l~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey~~~~ 189 (265)
T d1m56c_ 131 HLPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHAA 189 (265)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHccHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555555556666777666554444444455555556666555556677776543
No 6
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=11.65 E-value=95 Score=20.41 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=6.0
Q ss_pred HHhhhccc
Q 010440 455 VICALWAP 462 (510)
Q Consensus 455 ~I~~LWRP 462 (510)
+.+|+|||
T Consensus 34 iLvw~wrP 41 (43)
T d1lghb_ 34 VLVWVWKP 41 (43)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 45678998
No 7
>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.06 E-value=84 Score=22.67 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=11.3
Q ss_pred CCCCCCCEEecCCCC
Q 010440 139 GSCSVGEVIIHVDPE 153 (510)
Q Consensus 139 g~C~~g~~Ii~~~~~ 153 (510)
+.+.+|.|++|++..
T Consensus 25 ~~~~dG~FLvR~S~~ 39 (86)
T d1rpya_ 25 GPRSHGLFVIRQSET 39 (86)
T ss_dssp GGGGTTCEEEEECSS
T ss_pred CCCCCceEEEEecCC
Confidence 456789999997644
No 8
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.31 E-value=78 Score=25.27 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.4
Q ss_pred ceeEEecccceEEEEEEEeC
Q 010440 175 SEEVEIERTGMYYLYFMYCD 194 (510)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C~ 194 (510)
..+..|+++|+|.||...|-
T Consensus 39 ~g~L~V~~~G~YyVYsQV~f 58 (137)
T d1xu1a_ 39 GDIVRVWDTGIYLLYSQVLF 58 (137)
T ss_dssp TTEEEECSCEEEEEEEEEEE
T ss_pred CCEEEEccceEEEEEEEEEE
Confidence 45789999999999976653
No 9
>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.59 E-value=1.6e+02 Score=21.76 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=10.8
Q ss_pred CCCEEecCCCCCCC
Q 010440 143 VGEVIIHVDPENHE 156 (510)
Q Consensus 143 ~g~~Ii~~~~~~~~ 156 (510)
.|.|++|++.+.+.
T Consensus 25 ~G~FLvR~S~~~~g 38 (100)
T d1rjaa_ 25 TGAFLIRVSEKPSA 38 (100)
T ss_dssp SCCEEEEECSSSSS
T ss_pred CCeEEeecCCCCCC
Confidence 49999998766554
No 10
>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.39 E-value=1.9e+02 Score=21.76 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=13.9
Q ss_pred CCCCCCCEEecCCCCCCC
Q 010440 139 GSCSVGEVIIHVDPENHE 156 (510)
Q Consensus 139 g~C~~g~~Ii~~~~~~~~ 156 (510)
..++.|.|++|++.+++.
T Consensus 31 ~~~~~G~FLVR~S~~~~g 48 (114)
T d1blja_ 31 PMNKAGSFLIRESESNKG 48 (114)
T ss_dssp TTCCTTCEEBCBCTTCSS
T ss_pred cCCCCceEEEeccCCCCC
Confidence 456779999999876654
Done!