Citrus Sinensis ID: 010441

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDFYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCTKVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYKDGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL
cHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHcccccEEEEEEEcEEEEEEEEEEcccEEEEEEcccccEEEEcccccccccccccEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEEccEEEcccEEEEEccEEEEccccccccEEEccccccccccEEEEEEccEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
cHHHEHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEcEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEcccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccc
MALRILITVSLVLFSlshtsfgyspeevkswcgktpnpqpceyfltqktdvtsikqdTDFYKISLQLALERATTAQSRTytlgskcrnerEKAAWEDCRELYELTVLKLnqtsnsspgctkvdkqTWLSSALTNLETCRASLedlgvpeyvlpllsNNVTKLISNTlslnkvpynepsykdgfptwvkpgdrkllqttpraNIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTiitgsksvgggattfKSATVAvvgdnfiarditirntagpnnhqAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRqfyrecdiygtvdfIFGNAAVVLQNCnifarkppnrtntltaqgrtdpnqstgiiihncrvtaasdlkpvqssvktflgrpwkqysRTVYIKTFLDslinpagwmewsgdFALNTLYYAeymntgpgsstanrvkwrgyhvltspsqvsqfTVGNfiagnswlpatnvpftsgl
MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDFYKISLQLALERattaqsrtytlgskcrnerEKAAWEDCRELYELTVLKlnqtsnsspgctkvDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYKDGFPTWVKPGDRKLLQTTPRANIvvaqdgsgnvKTIQEAVAaasraggsrYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIrntagpnnhQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIfarkppnrtntltaqgrtdpnqstgIIIHNCRVTAASDLKPVQSsvktflgrpwkqysRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGnswlpatnvpftsgl
MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDFYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCTKVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYKDGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEavaaasraggsryvIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL
**LRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDFYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQ******GCTKVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYKDGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFAR********************TGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNV******
MALRILITVSLVLFS***************WCGKTPNPQPCE*****************FYKISLQLALERATTA******************AWEDCRELYELTVLKLNQ**********VDKQTWLSSALTNLETCRASLED***************TKLISNTLSLNK***************V*PGD**LLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL
MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDFYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCTKVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYKDGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL
MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDFYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCTKVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYKDGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFT***
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDFYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCTKVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYKDGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query510 2.2.26 [Sep-21-2011]
O04887510 Pectinesterase 2 OS=Citru no no 1.0 1.0 0.998 0.0
O22149511 Probable pectinesterase/p yes no 0.994 0.992 0.664 0.0
Q9FHN5536 Probable pectinesterase/p no no 0.939 0.893 0.512 1e-144
Q9FHN4540 Probable pectinesterase/p no no 0.947 0.894 0.512 1e-140
Q9STY3594 Probable pectinesterase/p no no 0.941 0.808 0.5 1e-138
O81320474 Putative pectinesterase/p no no 0.905 0.974 0.526 1e-137
P83948584 Pectinesterase 3 OS=Citru no no 0.937 0.818 0.481 1e-128
O04886584 Pectinesterase 1 OS=Citru no no 0.937 0.818 0.487 1e-126
P83947545 Pectinesterase/pectineste N/A no 0.972 0.910 0.446 1e-120
Q9M3B0598 Probable pectinesterase/p no no 0.949 0.809 0.440 1e-119
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function desciption
 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/510 (99%), Positives = 510/510 (100%)

Query: 1   MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDF 60
           MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDF
Sbjct: 1   MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDF 60

Query: 61  YKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCT 120
           YKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCT
Sbjct: 61  YKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCT 120

Query: 121 KVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYK 180
           KVDKQTWLS+ALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYK
Sbjct: 121 KVDKQTWLSTALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYK 180

Query: 181 DGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTY 240
           DGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTY
Sbjct: 181 DGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTY 240

Query: 241 NENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAG 300
           NENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAG
Sbjct: 241 NENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAG 300

Query: 301 PNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQ 360
           PNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQ
Sbjct: 301 PNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQ 360

Query: 361 NCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQ 420
           NCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQ
Sbjct: 361 NCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQ 420

Query: 421 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTS 480
           YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTS
Sbjct: 421 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTS 480

Query: 481 PSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510
           PSQVSQFTVGNFIAGNSWLPATNVPFTSGL
Sbjct: 481 PSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|Q9FHN5|PME59_ARATH Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1 Back     alignment and function description
>sp|Q9FHN4|PME60_ARATH Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1 Back     alignment and function description
>sp|Q9STY3|PME33_ARATH Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1 Back     alignment and function description
>sp|O81320|PME38_ARATH Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=3 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
6174914510 RecName: Full=Pectinesterase 2; Short=PE 1.0 1.0 0.998 0.0
2098713510 pectinesterase [Citrus sinensis] 1.0 1.0 0.992 0.0
225453983513 PREDICTED: pectinesterase 2 [Vitis vinif 0.994 0.988 0.755 0.0
354718774519 PME5 [Gossypium barbadense] 0.996 0.978 0.747 0.0
255541230514 Pectinesterase-2 precursor, putative [Ri 0.996 0.988 0.753 0.0
224129962514 predicted protein [Populus trichocarpa] 0.996 0.988 0.736 0.0
224067693514 predicted protein [Populus trichocarpa] 0.996 0.988 0.736 0.0
225435872512 PREDICTED: pectinesterase 2 [Vitis vinif 0.956 0.953 0.740 0.0
147865459512 hypothetical protein VITISV_017689 [Viti 0.956 0.953 0.740 0.0
359479289512 PREDICTED: pectinesterase 2-like [Vitis 0.956 0.953 0.740 0.0
>gi|6174914|sp|O04887.1|PME2_CITSI RecName: Full=Pectinesterase 2; Short=PE 2; AltName: Full=Pectin methylesterase; Flags: Precursor gi|2098709|gb|AAB57669.1| pectinesterase [Citrus sinensis] Back     alignment and taxonomy information
 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/510 (99%), Positives = 510/510 (100%)

Query: 1   MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDF 60
           MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDF
Sbjct: 1   MALRILITVSLVLFSLSHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDF 60

Query: 61  YKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCT 120
           YKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCT
Sbjct: 61  YKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGCT 120

Query: 121 KVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYK 180
           KVDKQTWLS+ALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYK
Sbjct: 121 KVDKQTWLSTALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYNEPSYK 180

Query: 181 DGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTY 240
           DGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTY
Sbjct: 181 DGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTY 240

Query: 241 NENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAG 300
           NENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAG
Sbjct: 241 NENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAG 300

Query: 301 PNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQ 360
           PNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQ
Sbjct: 301 PNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQ 360

Query: 361 NCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQ 420
           NCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQ
Sbjct: 361 NCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQ 420

Query: 421 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTS 480
           YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTS
Sbjct: 421 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTS 480

Query: 481 PSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510
           PSQVSQFTVGNFIAGNSWLPATNVPFTSGL
Sbjct: 481 PSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|2098713|gb|AAB57671.1| pectinesterase [Citrus sinensis] Back     alignment and taxonomy information
>gi|225453983|ref|XP_002280446.1| PREDICTED: pectinesterase 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|354718774|gb|AER38244.1| PME5 [Gossypium barbadense] Back     alignment and taxonomy information
>gi|255541230|ref|XP_002511679.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223548859|gb|EEF50348.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224129962|ref|XP_002320714.1| predicted protein [Populus trichocarpa] gi|222861487|gb|EEE99029.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224067693|ref|XP_002302526.1| predicted protein [Populus trichocarpa] gi|222844252|gb|EEE81799.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435872|ref|XP_002265599.1| PREDICTED: pectinesterase 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147865459|emb|CAN83663.1| hypothetical protein VITISV_017689 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479289|ref|XP_002265740.2| PREDICTED: pectinesterase 2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.994 0.992 0.651 1.5e-184
TAIR|locus:2126941474 PME38 "pectin methylesterase 3 0.905 0.974 0.512 7.2e-123
TAIR|locus:2153112536 AT5G51490 [Arabidopsis thalian 0.794 0.755 0.545 6.2e-117
TAIR|locus:2153127540 AT5G51500 [Arabidopsis thalian 0.782 0.738 0.550 2.2e-114
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.643 0.622 0.558 2.4e-110
TAIR|locus:2201230554 AT1G23200 [Arabidopsis thalian 0.625 0.575 0.541 2.4e-110
TAIR|locus:2099565594 AT3G47400 [Arabidopsis thalian 0.796 0.683 0.524 3.8e-110
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.649 0.553 0.550 6.3e-110
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.647 0.557 0.574 1.5e-108
TAIR|locus:2133219518 AT4G02320 [Arabidopsis thalian 0.713 0.702 0.528 2.4e-106
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1790 (635.2 bits), Expect = 1.5e-184, P = 1.5e-184
 Identities = 334/513 (65%), Positives = 413/513 (80%)

Query:     1 MALRILITVSLVLFSL-SHTSFGYSPEEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTD 59
             MA R  I   ++L  L + T  GY+ ++VK+WC +TPNP+PCEYFLT  ++   IK +++
Sbjct:     2 MAFRAYIINFVILCILVASTVSGYNQKDVKAWCSQTPNPKPCEYFLTHNSNNEPIKSESE 61

Query:    60 FYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELTVLKLNQTSNSSPGC 119
             F KIS++L L+RA  A++  +TLG KCR+ REKAAWEDC +LY+LTV K+N+T + +  C
Sbjct:    62 FLKISMKLVLDRAILAKTHAFTLGPKCRDTREKAAWEDCIKLYDLTVSKINETMDPNVKC 121

Query:   120 TKVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLSNNVTKLISNTLSLNKVPYN-EPS 178
             +K+D QTWLS+ALTNL+TCRA   +LGV + VLPL+SNNV+ L+ NTL++NKVP+N  P 
Sbjct:   122 SKLDAQTWLSTALTNLDTCRAGFLELGVTDIVLPLMSNNVSNLLCNTLAINKVPFNYTPP 181

Query:   179 YKDGFPTWVKPGDRKLLQT-TPRANIVVAQDGSGNVKTIQEXXXXXXXXXXXXXXIYIKA 237
              KDGFP+WVKPGDRKLLQ+ TP+ N VVA+DGSGN KTI+E              IY+K 
Sbjct:   182 EKDGFPSWVKPGDRKLLQSSTPKDNAVVAKDGSGNFKTIKEAIDAASGSGRFV--IYVKQ 239

Query:   238 GTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRN 297
             G Y+EN+E++ KN+M  GDGIGKTIITGSKSVGGG TTF SATVA VGD FIAR IT RN
Sbjct:   240 GVYSENLEIRKKNVMLRGDGIGKTIITGSKSVGGGTTTFNSATVAAVGDGFIARGITFRN 299

Query:   298 TAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAV 357
             TAG +N QAVALRSGSDLSVFY+CSFE YQDTLYVHS RQFYR+CD+YGTVDFIFGNAA 
Sbjct:   300 TAGASNEQAVALRSGSDLSVFYQCSFEAYQDTLYVHSNRQFYRDCDVYGTVDFIFGNAAA 359

Query:   358 VLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRP 417
             VLQNCNIFAR+P ++TNT+TAQGR+DPNQ+TGIIIHN RVTAASDL+PV  S KT+LGRP
Sbjct:   360 VLQNCNIFARRPRSKTNTITAQGRSDPNQNTGIIIHNSRVTAASDLRPVLGSTKTYLGRP 419

Query:   418 WKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHV 477
             W+QYSRTV++KT LDSLI+P GW+EW G+FAL TL+YAE+ NTGPG+ST+ RV W G+ V
Sbjct:   420 WRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRV 479

Query:   478 LTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510
             L S S+ S+FTVG F+AG SW+P++ VPFTSGL
Sbjct:   480 LGSASEASKFTVGTFLAGGSWIPSS-VPFTSGL 511
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0016020 "membrane" evidence=IDA
TAIR|locus:2126941 PME38 "pectin methylesterase 38" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153127 AT5G51500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099565 AT3G47400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133219 AT4G02320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04887PME2_CITSI3, ., 1, ., 1, ., 1, 10.99801.01.0nono
O22149PME17_ARATH3, ., 1, ., 1, ., 1, 10.66470.99410.9921yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.993
3rd Layer3.1.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 0.0
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 0.0
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-178
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-172
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-170
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-169
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-166
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-163
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-161
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-160
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-155
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-151
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-151
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-148
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-145
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-139
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-135
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-129
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-125
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-121
PLN02197588 PLN02197, PLN02197, pectinesterase 4e-92
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 3e-67
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-62
PLN02773317 PLN02773, PLN02773, pectinesterase 3e-62
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 2e-58
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-56
PLN02304379 PLN02304, PLN02304, probable pectinesterase 8e-52
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-49
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 2e-49
PLN02634359 PLN02634, PLN02634, probable pectinesterase 4e-47
PLN02176340 PLN02176, PLN02176, putative pectinesterase 3e-40
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 4e-40
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 5e-26
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 2e-24
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 5e-22
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 4e-21
TIGR04247377 TIGR04247, NosD_copper_fam, nitrous oxide reductas 0.001
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 0.002
TIGR03805314 TIGR03805, beta_helix_1, parallel beta-helix repea 0.003
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information 
 Score =  581 bits (1499), Expect = 0.0
 Identities = 203/298 (68%), Positives = 242/298 (81%), Gaps = 3/298 (1%)

Query: 202 NIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEV--KLKNIMFVGDGIG 259
           ++VVA+DGSG  KTI EAVAAA +    R+VIY+KAG Y EN+EV  K  N+MFVGDG G
Sbjct: 1   DVVVAKDGSGQFKTINEAVAAAPKKSSKRFVIYVKAGVYKENVEVPKKKTNVMFVGDGPG 60

Query: 260 KTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFY 319
           KTIITGS +   G TTF++AT AVVGD FIARDIT  NTAGP  HQAVALR G+DLSVFY
Sbjct: 61  KTIITGSLNFIDGGTTFRTATFAVVGDGFIARDITFENTAGPEKHQAVALRVGADLSVFY 120

Query: 320 RCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTA 378
           RCSF+GYQDTLYVHS RQFYR+CDI GTVDFIFGNAA V QNCNI ARKP P + NT+TA
Sbjct: 121 RCSFDGYQDTLYVHSNRQFYRDCDITGTVDFIFGNAAAVFQNCNIVARKPLPGQKNTVTA 180

Query: 379 QGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPA 438
           QGRTDPNQ+TGI+I NCR+TA  DL PV+ + KT+LGRPWK+YSRTV +++++D +I+PA
Sbjct: 181 QGRTDPNQNTGIVIQNCRITADPDLLPVKGTFKTYLGRPWKEYSRTVIMQSYIDDVIDPA 240

Query: 439 GWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGN 496
           GW+ W+GDFAL+TLYY EY N+GPG+ T+ RVKW GY V+ S  +  +FTVGNFI GN
Sbjct: 241 GWLPWNGDFALDTLYYGEYNNSGPGAGTSKRVKWPGYKVILSDEEALKFTVGNFIGGN 298

Length = 298
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family maturation protein NosD Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information
>gnl|CDD|163517 TIGR03805, beta_helix_1, parallel beta-helix repeat-containing protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 510
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.96
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.94
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.92
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.45
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.74
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.68
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.43
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.19
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.09
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.4
PLN02793443 Probable polygalacturonase 97.03
KOG1777 625 consensus Putative Zn-finger protein [General func 96.89
PLN03010409 polygalacturonase 96.87
PLN03003456 Probable polygalacturonase At3g15720 96.68
PLN02218431 polygalacturonase ADPG 96.68
PRK10531422 acyl-CoA thioesterase; Provisional 96.47
PLN02480343 Probable pectinesterase 96.44
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.33
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.11
PLN02665366 pectinesterase family protein 96.01
PLN02432293 putative pectinesterase 95.83
PLN02176340 putative pectinesterase 95.82
PLN02634359 probable pectinesterase 95.82
PLN02497331 probable pectinesterase 95.78
PLN02155394 polygalacturonase 95.72
PLN02773317 pectinesterase 95.62
PLN02682369 pectinesterase family protein 95.3
PLN02304379 probable pectinesterase 95.21
PLN02671359 pectinesterase 95.19
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.12
smart00656190 Amb_all Amb_all domain. 95.09
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.09
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.08
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.95
PLN02916502 pectinesterase family protein 94.89
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 94.87
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.78
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.73
PLN02197588 pectinesterase 94.53
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 94.42
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 94.35
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.89
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.89
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.7
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.62
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.53
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 93.49
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.26
PLN02314586 pectinesterase 93.2
PLN02301548 pectinesterase/pectinesterase inhibitor 93.19
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.15
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 92.99
PLN02468565 putative pectinesterase/pectinesterase inhibitor 92.84
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 92.59
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.33
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 91.99
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 91.74
PLN02313587 Pectinesterase/pectinesterase inhibitor 91.26
smart00722146 CASH Domain present in carbohydrate binding protei 90.92
PLN02188404 polygalacturonase/glycoside hydrolase family prote 90.34
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 88.26
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 84.8
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 84.71
PLN02218431 polygalacturonase ADPG 80.63
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 80.45
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=2.2e-127  Score=1027.32  Aligned_cols=483  Identities=52%  Similarity=0.931  Sum_probs=436.6

Q ss_pred             hhHhcccCCCCChhchHHhhcccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 010441           26 EEVKSWCGKTPNPQPCEYFLTQKTDVTSIKQDTDFYKISLQLALERATTAQSRTYTLGSKCRNEREKAAWEDCRELYELT  105 (510)
Q Consensus        26 ~~I~~~C~~T~yp~lC~~sL~~~~~~s~~~d~~~L~~~al~~~~~~a~~~~~~i~~l~~~~~~~~~~~aL~dC~e~y~da  105 (510)
                      ..|+.+|+.|+||++|+++|.+++.+....++.+|+++++++++.++.++...+.++....++++.+.||+||+|+|+|+
T Consensus        35 ~~Irs~C~~T~YP~lC~sSLs~~~~s~s~~~~~~l~~~~~~aAl~~a~sa~~~i~~l~~~~~~~r~~~AL~DC~ELl~DA  114 (539)
T PLN02995         35 TDIDGWCDKTPYPDPCKCYFKNHNGFRQPTQISEFRVMLVEAAMDRAISARDELTNSGKNCTDFKKQAVLADCIDLYGDT  114 (539)
T ss_pred             HHHHhhcCCCCChHHHHHHHhhccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999998763222488999999999999999999999998855446889999999999999999


Q ss_pred             HHHHHHhhhcCCC-------CChhhHHHHHHHhhcchhHHHhhhccCCCCCcccchhc--hhhhhhhhhhhccCCCCCCC
Q 010441          106 VLKLNQTSNSSPG-------CTKVDKQTWLSSALTNLETCRASLEDLGVPEYVLPLLS--NNVTKLISNTLSLNKVPYNE  176 (510)
Q Consensus       106 vd~L~~a~~~l~~-------~~~~d~~twLSAAlt~~~TC~DgF~e~~~~~~~~~~~~--~~~~~L~SnaLai~~~~~~~  176 (510)
                      +|+|++|+++|..       ..++|++||||||||+++||+|||++.++... +...+  .++.||+||||||++.+...
T Consensus       115 vD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALT~q~TC~DGF~~~~~~~~-v~~~v~~~~~~~ltSNaLAi~~~l~~~  193 (539)
T PLN02995        115 IMQLNRTLQGVSPKAGAAKRCTDFDAQTWLSTALTNTETCRRGSSDLNVSDF-ITPIVSNTKISHLISNCLAVNGALLTA  193 (539)
T ss_pred             HHHHHHHHHHHhhccccccccchhhHHHHHHHHhcchhhhhhhhccccchhh-hhhhhhhhhHHHHHHHHHHHhhhhccc
Confidence            9999999998742       25689999999999999999999988654321 22223  67999999999998887643


Q ss_pred             C------CCCCCCCCccCCCCCccccCCCCceEEEcCCCCCCcccHHHHHHHhHhc--CCceEEEEEeCcEEeeecee--
Q 010441          177 P------SYKDGFPTWVKPGDRKLLQTTPRANIVVAQDGSGNVKTIQEAVAAASRA--GGSRYVIYIKAGTYNENIEV--  246 (510)
Q Consensus       177 ~------~~~~g~p~W~~~~~~~ll~~~~~~~~~V~~~g~g~f~TIq~Ai~aa~~~--~~~~~~I~I~~G~Y~E~v~I--  246 (510)
                      .      ...++||+|++..+|+||+. .+.+++|++||+|+|+|||+||+++|+.  +++|++|+|+||+|+|+|.|  
T Consensus       194 ~~~~~~~~~~~~~p~w~~~~~r~ll~~-~~~~~~Va~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~V~i~~  272 (539)
T PLN02995        194 GNNGNTTANQKGFPTWVSRKDRRLLRL-VRANLVVAKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQENINVRL  272 (539)
T ss_pred             ccccccccccCCCCcccChhhhhhhhc-CCCcEEECCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeEEEEEecC
Confidence            2      13468999999999999975 4679999999999999999999999963  66799999999999999999  


Q ss_pred             eeccEEEEecCCccEEEEcCcccCCCCccccceeeeEecCcEEEEEeEEeeCCCCCCCceEEEEecCCceEEEEeeeeec
Q 010441          247 KLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGY  326 (510)
Q Consensus       247 ~k~~itl~G~~~~~t~I~~~~~~~~~~~t~~sat~~v~a~~~~~~~lti~N~~~~~~~qavAl~~~~d~~~~~~c~~~g~  326 (510)
                      +|+||+|+|+|.++|+|+|+.+..++++|++||||.|.+++|+++||||+|++++..+|||||++.|||++||+|+|+||
T Consensus       273 ~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~  352 (539)
T PLN02995        273 NNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGY  352 (539)
T ss_pred             CCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecc
Confidence            78999999999999999999887778889999999999999999999999999988899999999999999999999999


Q ss_pred             cceEeecccceEeeecEEecccceeeccceEEEEeeEEEeecC-CCCccEEEecCCCCCCCCeeEEEEeeEEeecCCCCC
Q 010441          327 QDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKP  405 (510)
Q Consensus       327 QdTl~~~~~r~~~~~c~I~G~vDfIfG~g~a~f~~c~i~~~~~-~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~  405 (510)
                      |||||++.+||||++|||+|+||||||+|+++||+|+|+++.+ .++.|+||||+|+++++++||||+||+|+++++..+
T Consensus       353 QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~  432 (539)
T PLN02995        353 QDTLMVHSQRQFYRECYIYGTVDFIFGNAAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKP  432 (539)
T ss_pred             cchhccCCCceEEEeeEEeeccceEecccceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCCcccc
Confidence            9999999999999999999999999999999999999999976 456799999999999999999999999999877544


Q ss_pred             CcCcceEEEeccccCcceEEEEecccCccccCCCCCCCCC--CCCCCceEEEEecccCCCCCCCCcccccCccccCCHHH
Q 010441          406 VQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSG--DFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQ  483 (510)
Q Consensus       406 ~~~~~~~yLGRpW~~~~~~v~~~t~~~~~i~~~Gw~~w~~--~~~~~~~~f~Ey~~~GpGa~~~~r~~w~~~~~~~~~~~  483 (510)
                      ....+++||||||++|+||||++|+|+++|.|+||.+|++  ++.+++++|+||+|+|||+++++||+|++++++++++|
T Consensus       433 ~~~~~~~yLGRPW~~ysrvv~~~t~~~~~I~p~GW~~W~~~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~W~~~~~l~~~~e  512 (539)
T PLN02995        433 VVRTVKTYMGRPWMKFSRTVVLQTYLDNVVSPVGWSPWIEGSVFGLDTLFYAEYKNTGPASSTRWRVRWKGFHVLGRASD  512 (539)
T ss_pred             cccccceeccCCCCCCcceEEEeccccCccccccccCcCCCCCCCcCceEEEEeccccCCCCcCCCCccccccccCCHHH
Confidence            3445679999999999999999999999999999999975  46679999999999999999999999999888777899


Q ss_pred             HhcccccccccCCCCcCCCCCCCCCCC
Q 010441          484 VSQFTVGNFIAGNSWLPATNVPFTSGL  510 (510)
Q Consensus       484 a~~~t~~~~~~g~~W~p~~~~~~~~~~  510 (510)
                      |++||..+||+|++|+|.++|||++||
T Consensus       513 A~~ft~~~fi~g~~W~p~~~v~~~~gl  539 (539)
T PLN02995        513 ASAFTVGKFIAGTAWLPGTGIPFTSGL  539 (539)
T ss_pred             HHhhhHHhhcCCCCCCcCCCCCcCCCC
Confidence            999999999999999999999999997

>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-107
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-102
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 1e-23
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-23
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-22
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-19
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/312 (60%), Positives = 229/312 (73%), Gaps = 3/312 (0%)
Query: 202 NIVVAQDGSGNVKTIQEXXXXXXXXXXXXXXIYIKAGTYNENIEV--KLKNIMFVGDGIG 259
           N+VVA DGSG+ KT+ E              I IKAG Y EN++V  K KNIMF+GDG  
Sbjct: 8   NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67
Query: 260 KTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFY 319
            TIIT SK+V  G+TTF SATVA VG  F+ARDIT +NTAG   HQAVALR GSDLS FY
Sbjct: 68  STIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFY 127
Query: 320 RCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTA 378
           RC    YQD+LYVHS RQF+  C I GTVDFIFGNAAVVLQ+C+I AR+P   + N +TA
Sbjct: 128 RCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTA 187
Query: 379 QGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPA 438
           QGRTDPNQ+TGI+I   R+ A SDL+PVQSS  T+LGRPWK+YSRTV +++ + ++INPA
Sbjct: 188 QGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA 247
Query: 439 GWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSW 498
           GW  W G+FAL+TLYY EY NTG G++T+ RV W+G+ V+TS ++   FT G+FIAG SW
Sbjct: 248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307
Query: 499 LPATNVPFTSGL 510
           L AT  PF+ GL
Sbjct: 308 LKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-180
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-180
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-139
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-138
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-108
1x91_A153 Invertase/pectin methylesterase inhibitor family p 3e-33
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 2e-31
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 2e-04
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-04
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-04
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  508 bits (1310), Expect = e-180
 Identities = 187/314 (59%), Positives = 228/314 (72%), Gaps = 3/314 (0%)

Query: 200 RANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEV--KLKNIMFVGDG 257
            AN VVAQDG+G+ +T+ EAVAAA     +RYVIY+K GTY EN+EV     N+M VGDG
Sbjct: 2   IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDG 61

Query: 258 IGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSV 317
           +  T ITGS +V  G+TTF+SAT+A VG  FI +DI I+NTAGP   QAVALR G+D+SV
Sbjct: 62  MYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSV 121

Query: 318 FYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTL 376
             RC  + YQDTLY HSQRQFYR+  + GTVDFIFGNAAVV Q C + ARKP   + N +
Sbjct: 122 INRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMV 181

Query: 377 TAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLIN 436
           TAQGRTDPNQ+TG  I  C + A+SDL+PV     T+LGRPWK+YSRTV ++++L  LIN
Sbjct: 182 TAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN 241

Query: 437 PAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGN 496
           PAGW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FTV   I G 
Sbjct: 242 PAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGG 301

Query: 497 SWLPATNVPFTSGL 510
           SWL +T V +  GL
Sbjct: 302 SWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.96
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.62
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.45
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.98
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.33
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.79
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.75
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.74
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.68
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.59
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.58
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.54
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.53
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.5
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.44
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.44
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.39
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.37
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.19
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.98
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.87
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.84
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.81
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.81
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.8
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.39
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.32
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.22
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.08
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.06
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.77
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.76
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.7
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.66
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.33
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.4
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 93.74
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 89.94
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 89.8
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 89.02
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 88.89
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 88.6
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 87.24
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 86.6
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 86.12
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 84.76
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 83.34
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 81.94
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 81.75
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.8e-89  Score=696.46  Aligned_cols=310  Identities=60%  Similarity=1.025  Sum_probs=293.7

Q ss_pred             ceEEEcCCCCCCcccHHHHHHHhHhcCCceEEEEEeCcEEeeeceee--eccEEEEecCCccEEEEcCcccCCCCccccc
Q 010441          201 ANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVK--LKNIMFVGDGIGKTIITGSKSVGGGATTFKS  278 (510)
Q Consensus       201 ~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~--k~~itl~G~~~~~t~I~~~~~~~~~~~t~~s  278 (510)
                      .+++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|.  |++|+|+|++.++|+|+++.+..++.+|+++
T Consensus         3 ~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~s   82 (317)
T 1xg2_A            3 ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRS   82 (317)
T ss_dssp             CSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGG
T ss_pred             ceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccce
Confidence            58999999999999999999999999889999999999999999995  8899999999999999999887788899999


Q ss_pred             eeeeEecCcEEEEEeEEeeCCCCCCCceEEEEecCCceEEEEeeeeeccceEeecccceEeeecEEecccceeeccceEE
Q 010441          279 ATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVV  358 (510)
Q Consensus       279 at~~v~a~~~~~~~lti~N~~~~~~~qavAl~~~~d~~~~~~c~~~g~QdTl~~~~~r~~~~~c~I~G~vDfIfG~g~a~  358 (510)
                      +||.|.+++|+++||||+|++++..+||+||++.+|++.|+||+|+|+|||||++++||||++|+|+|+||||||+|+++
T Consensus        83 atv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~av  162 (317)
T 1xg2_A           83 ATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVV  162 (317)
T ss_dssp             CSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEEE
T ss_pred             eEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceEE
Confidence            99999999999999999999998788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEEeecC-CCCccEEEecCCCCCCCCeeEEEEeeEEeecCCCCCCcCcceEEEeccccCcceEEEEecccCccccC
Q 010441          359 LQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINP  437 (510)
Q Consensus       359 f~~c~i~~~~~-~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~~i~~  437 (510)
                      ||+|+|+++++ .++.++||||+|+++++++||||+||+|+++++..+..+..++||||||++|+|+||++|+|+++|+|
T Consensus       163 f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p  242 (317)
T 1xg2_A          163 FQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP  242 (317)
T ss_dssp             EESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBCT
T ss_pred             EeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCcccc
Confidence            99999999876 45679999999999999999999999999987654433445799999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEecccCCCCCCCCcccccCccccCCHHHHhcccccccccCCCCcCCCCCCCCCCC
Q 010441          438 AGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL  510 (510)
Q Consensus       438 ~Gw~~w~~~~~~~~~~f~Ey~~~GpGa~~~~r~~w~~~~~~~~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~  510 (510)
                      +||.+|++++++++++|+||+|+|||+++++||+|++++++++++||++|+..+||+|++|+|.++|||..||
T Consensus       243 ~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             TCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             cccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            9999999888899999999999999999999999998888888899999999999999999999999999986
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 510
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-153
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-100
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 4e-31
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 2e-21
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 2e-05
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 1e-04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  437 bits (1124), Expect = e-153
 Identities = 197/317 (62%), Positives = 240/317 (75%), Gaps = 3/317 (0%)

Query: 197 TTPRANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEV--KLKNIMFV 254
           +T   N+VVA DGSG+ KT+ EAVAAA     +RYVI IKAG Y EN++V  K KNIMF+
Sbjct: 3   STVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFL 62

Query: 255 GDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSD 314
           GDG   TIIT SK+V  G+TTF SATVA VG  F+ARDIT +NTAG   HQAVALR GSD
Sbjct: 63  GDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSD 122

Query: 315 LSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRT 373
           LS FYRC    YQD+LYVHS RQF+  C I GTVDFIFGNAAVVLQ+C+I AR+P   + 
Sbjct: 123 LSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQK 182

Query: 374 NTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDS 433
           N +TAQGRTDPNQ+TGI+I   R+ A SDL+PVQSS  T+LGRPWK+YSRTV +++ + +
Sbjct: 183 NMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITN 242

Query: 434 LINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFI 493
           +INPAGW  W G+FAL+TLYY EY NTG G++T+ RV W+G+ V+TS ++   FT G+FI
Sbjct: 243 VINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFI 302

Query: 494 AGNSWLPATNVPFTSGL 510
           AG SWL AT  PF+ GL
Sbjct: 303 AGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.95
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.05
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.74
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.93
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.67
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.42
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.14
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.92
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.64
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.28
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.07
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.02
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.97
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.96
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.79
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.49
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.32
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.29
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 92.77
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 86.97
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 86.74
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 86.64
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 82.1
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.3e-93  Score=721.59  Aligned_cols=311  Identities=63%  Similarity=1.050  Sum_probs=297.3

Q ss_pred             CceEEEcCCCCCCcccHHHHHHHhHhcCCceEEEEEeCcEEeeecee--eeccEEEEecCCccEEEEcCcccCCCCcccc
Q 010441          200 RANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEV--KLKNIMFVGDGIGKTIITGSKSVGGGATTFK  277 (510)
Q Consensus       200 ~~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I--~k~~itl~G~~~~~t~I~~~~~~~~~~~t~~  277 (510)
                      +++++|++||+|||+|||+|||++|.++++|++|+|+||+|+|+|.|  +|++|||+|+|++.|+|+++.+..++.+|+.
T Consensus         6 ~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~   85 (319)
T d1gq8a_           6 GPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFN   85 (319)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGG
T ss_pred             CCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcccc
Confidence            57899999999999999999999999888999999999999999999  7899999999999999999988888888999


Q ss_pred             ceeeeEecCcEEEEEeEEeeCCCCCCCceEEEEecCCceEEEEeeeeeccceEeecccceEeeecEEecccceeeccceE
Q 010441          278 SATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAV  357 (510)
Q Consensus       278 sat~~v~a~~~~~~~lti~N~~~~~~~qavAl~~~~d~~~~~~c~~~g~QdTl~~~~~r~~~~~c~I~G~vDfIfG~g~a  357 (510)
                      ++||.|.+++|+++||||+|++++.++|||||++.+||+.|++|+|+|||||||+++|||||++|+|+|+||||||+|++
T Consensus        86 sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a  165 (319)
T d1gq8a_          86 SATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAV  165 (319)
T ss_dssp             GCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCEE
T ss_pred             ccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCcee
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeEEEeecC-CCCccEEEecCCCCCCCCeeEEEEeeEEeecCCCCCCcCcceEEEeccccCcceEEEEecccCcccc
Q 010441          358 VLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLIN  436 (510)
Q Consensus       358 ~f~~c~i~~~~~-~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~~i~  436 (510)
                      +||+|+|+++.+ .+..++||||+|+++.+++||||++|+|+++++..+.....++||||||++++||||++|+|++||.
T Consensus       166 ~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~I~  245 (319)
T d1gq8a_         166 VLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN  245 (319)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccccc
Confidence            999999999876 5567899999999999999999999999998876555556689999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCceEEEEecccCCCCCCCCcccccCccccCCHHHHhcccccccccCCCCcCCCCCCCCCCC
Q 010441          437 PAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL  510 (510)
Q Consensus       437 ~~Gw~~w~~~~~~~~~~f~Ey~~~GpGa~~~~r~~w~~~~~~~~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~  510 (510)
                      |+||.+|++.+.+++++|+||+|+|||+++++||+|++++++++++||++|+.++||+|++|+|.++|||.+||
T Consensus       246 p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            99999999888899999999999999999999999998888999999999999999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure