Query 010444
Match_columns 510
No_of_seqs 334 out of 2307
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 00:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462 C2H2-type Zn-finger pr 99.9 4.7E-22 1E-26 196.6 5.9 119 3-130 128-266 (279)
2 KOG2462 C2H2-type Zn-finger pr 99.8 6.9E-21 1.5E-25 188.3 5.4 91 43-142 158-250 (279)
3 KOG3576 Ovo and related transc 99.7 3.5E-17 7.6E-22 155.6 3.6 119 3-141 115-246 (267)
4 KOG3623 Homeobox transcription 99.6 1.3E-16 2.8E-21 173.0 5.9 112 6-135 211-339 (1007)
5 KOG1074 Transcriptional repres 99.5 4.2E-15 9E-20 163.9 -0.7 80 45-131 604-692 (958)
6 KOG1074 Transcriptional repres 99.5 1E-14 2.2E-19 160.9 2.3 50 82-131 606-657 (958)
7 KOG3608 Zn finger proteins [Ge 99.4 4.2E-13 9.1E-18 136.6 5.8 107 3-131 235-345 (467)
8 KOG3608 Zn finger proteins [Ge 99.3 5E-13 1.1E-17 136.0 3.7 117 6-131 178-316 (467)
9 KOG3623 Homeobox transcription 99.3 4.7E-13 1E-17 145.8 1.5 80 42-128 890-971 (1007)
10 KOG3576 Ovo and related transc 99.2 1.7E-12 3.6E-17 124.0 1.1 84 43-133 114-199 (267)
11 PLN03086 PRLI-interacting fact 99.2 3.1E-11 6.7E-16 132.0 8.7 105 3-133 451-566 (567)
12 PHA00733 hypothetical protein 98.9 1.1E-09 2.4E-14 99.3 4.5 85 43-135 37-127 (128)
13 PHA00733 hypothetical protein 98.8 4.5E-09 9.8E-14 95.3 5.0 84 3-105 38-124 (128)
14 PLN03086 PRLI-interacting fact 98.6 1.3E-07 2.7E-12 104.0 8.5 122 6-141 408-547 (567)
15 PHA02768 hypothetical protein; 98.5 4.7E-08 1E-12 75.8 2.1 41 82-123 6-47 (55)
16 KOG3993 Transcription factor ( 98.5 5.4E-08 1.2E-12 101.8 1.7 78 6-103 268-378 (500)
17 KOG3993 Transcription factor ( 98.3 3.6E-07 7.8E-12 95.7 3.6 85 45-136 266-385 (500)
18 PHA02768 hypothetical protein; 98.3 4.1E-07 8.8E-12 70.6 1.8 44 46-98 5-48 (55)
19 PF13465 zf-H2C2_2: Zinc-finge 98.1 1.3E-06 2.8E-11 57.7 1.8 26 68-93 1-26 (26)
20 PF13465 zf-H2C2_2: Zinc-finge 97.7 2.2E-05 4.8E-10 51.9 2.3 24 96-119 1-26 (26)
21 PHA00616 hypothetical protein 97.7 1.5E-05 3.2E-10 59.3 1.4 34 5-51 1-34 (44)
22 COG5189 SFP1 Putative transcri 97.6 1.6E-05 3.5E-10 81.0 0.4 50 79-128 347-419 (423)
23 PHA00732 hypothetical protein 97.6 5.3E-05 1.2E-09 63.3 3.3 48 5-77 1-48 (79)
24 PHA00616 hypothetical protein 97.6 3.1E-05 6.6E-10 57.6 1.6 32 81-112 1-33 (44)
25 COG5189 SFP1 Putative transcri 97.5 2.3E-05 5.1E-10 79.8 0.4 56 43-103 346-420 (423)
26 KOG2231 Predicted E3 ubiquitin 97.5 0.00079 1.7E-08 75.6 11.4 124 6-144 100-249 (669)
27 PF05605 zf-Di19: Drought indu 97.4 0.0002 4.3E-09 55.3 4.1 52 5-77 2-53 (54)
28 PF05605 zf-Di19: Drought indu 97.4 0.00023 4.9E-09 55.0 4.2 46 82-130 3-52 (54)
29 PF00096 zf-C2H2: Zinc finger, 97.4 9.7E-05 2.1E-09 46.8 1.7 23 6-28 1-23 (23)
30 PHA00732 hypothetical protein 97.3 0.00014 3.1E-09 60.8 2.7 45 46-103 1-46 (79)
31 PF12756 zf-C2H2_2: C2H2 type 97.1 0.00033 7.2E-09 58.9 2.8 72 7-103 1-72 (100)
32 PF13894 zf-C2H2_4: C2H2-type 96.9 0.00057 1.2E-08 42.8 2.0 24 6-29 1-24 (24)
33 PF00096 zf-C2H2: Zinc finger, 96.9 0.00063 1.4E-08 43.0 1.9 22 82-103 1-22 (23)
34 PF13912 zf-C2H2_6: C2H2-type 96.8 0.00077 1.7E-08 44.3 1.8 25 5-29 1-25 (27)
35 PF12756 zf-C2H2_2: C2H2 type 96.4 0.0024 5.2E-08 53.6 2.7 74 48-132 1-75 (100)
36 PF13894 zf-C2H2_4: C2H2-type 96.2 0.0041 8.8E-08 38.8 2.4 22 82-103 1-22 (24)
37 smart00355 ZnF_C2H2 zinc finge 96.0 0.005 1.1E-07 38.8 2.2 24 6-29 1-24 (26)
38 COG5236 Uncharacterized conser 96.0 0.0051 1.1E-07 63.8 3.2 111 5-134 151-278 (493)
39 PF13912 zf-C2H2_6: C2H2-type 95.7 0.0045 9.7E-08 40.6 1.1 22 109-130 2-24 (27)
40 KOG1146 Homeobox protein [Gene 95.7 0.014 3E-07 69.4 5.8 24 109-132 590-614 (1406)
41 PF09237 GAGA: GAGA factor; I 95.5 0.0088 1.9E-07 45.9 2.2 31 78-108 21-52 (54)
42 COG5048 FOG: Zn-finger [Genera 95.1 0.0044 9.6E-08 63.8 -0.9 107 4-130 288-411 (467)
43 PF12874 zf-met: Zinc-finger o 94.9 0.014 3.1E-07 37.4 1.4 23 6-28 1-23 (25)
44 PRK04860 hypothetical protein; 94.8 0.014 3E-07 55.2 1.8 36 81-120 119-156 (160)
45 smart00355 ZnF_C2H2 zinc finge 94.7 0.028 6E-07 35.3 2.3 22 82-103 1-22 (26)
46 PF09237 GAGA: GAGA factor; I 93.9 0.039 8.5E-07 42.4 2.1 27 3-29 22-48 (54)
47 PRK04860 hypothetical protein; 93.9 0.033 7.1E-07 52.7 2.0 41 44-95 117-157 (160)
48 KOG2482 Predicted C2H2-type Zn 93.8 0.081 1.7E-06 55.1 4.8 115 5-130 195-357 (423)
49 COG5048 FOG: Zn-finger [Genera 93.6 0.021 4.5E-07 58.8 0.1 117 2-123 316-461 (467)
50 KOG2231 Predicted E3 ubiquitin 93.3 0.85 1.8E-05 51.9 12.2 69 16-103 160-234 (669)
51 PF13909 zf-H2C2_5: C2H2-type 92.5 0.071 1.5E-06 34.0 1.4 23 6-29 1-23 (24)
52 PF12171 zf-C2H2_jaz: Zinc-fin 92.5 0.036 7.7E-07 36.6 -0.0 24 5-28 1-24 (27)
53 PF12874 zf-met: Zinc-finger o 92.2 0.07 1.5E-06 34.2 1.0 21 82-102 1-21 (25)
54 KOG1146 Homeobox protein [Gene 91.8 0.071 1.5E-06 63.7 1.3 31 104-134 514-545 (1406)
55 PF13909 zf-H2C2_5: C2H2-type 90.8 0.2 4.4E-06 31.9 2.2 21 82-103 1-21 (24)
56 COG5236 Uncharacterized conser 90.4 0.71 1.5E-05 48.4 6.8 73 47-133 221-307 (493)
57 KOG2785 C2H2-type Zn-finger pr 89.3 0.57 1.2E-05 49.7 5.2 118 5-129 3-242 (390)
58 PF12171 zf-C2H2_jaz: Zinc-fin 88.9 0.11 2.4E-06 34.3 -0.3 21 82-102 2-22 (27)
59 smart00451 ZnF_U1 U1-like zinc 88.8 0.3 6.5E-06 33.6 1.9 24 5-28 3-26 (35)
60 KOG4173 Alpha-SNAP protein [In 84.6 0.47 1E-05 46.5 1.4 82 43-132 76-171 (253)
61 PF13913 zf-C2HC_2: zinc-finge 84.4 0.85 1.8E-05 29.9 2.1 21 6-27 3-23 (25)
62 PF13913 zf-C2HC_2: zinc-finge 84.2 0.81 1.8E-05 30.0 1.9 19 83-102 4-22 (25)
63 smart00451 ZnF_U1 U1-like zinc 83.5 0.76 1.6E-05 31.6 1.7 23 81-103 3-25 (35)
64 KOG2893 Zn finger protein [Gen 83.2 0.33 7.1E-06 48.5 -0.3 44 48-102 12-55 (341)
65 KOG2186 Cell growth-regulating 82.8 0.81 1.8E-05 46.1 2.2 45 82-128 4-49 (276)
66 KOG2482 Predicted C2H2-type Zn 82.0 2.6 5.7E-05 44.3 5.6 85 43-133 141-305 (423)
67 KOG4173 Alpha-SNAP protein [In 80.7 0.63 1.4E-05 45.6 0.6 79 3-104 77-170 (253)
68 KOG2071 mRNA cleavage and poly 79.9 0.94 2E-05 50.6 1.7 34 3-37 416-449 (579)
69 KOG2893 Zn finger protein [Gen 78.7 0.64 1.4E-05 46.5 -0.0 42 7-72 12-53 (341)
70 KOG4124 Putative transcription 77.8 0.41 8.9E-06 50.2 -1.7 22 3-25 211-232 (442)
71 PF04959 ARS2: Arsenite-resist 76.7 1.5 3.2E-05 43.5 1.9 41 106-146 75-116 (214)
72 PF05443 ROS_MUCR: ROS/MUCR tr 75.0 2 4.2E-05 39.6 2.1 37 108-147 72-109 (132)
73 PF12013 DUF3505: Protein of u 74.2 5 0.00011 35.0 4.4 24 109-132 81-109 (109)
74 PF09538 FYDLN_acid: Protein o 74.2 1.9 4E-05 38.4 1.7 29 82-120 10-39 (108)
75 COG4049 Uncharacterized protei 73.9 1.4 3.1E-05 34.6 0.8 28 2-29 14-41 (65)
76 PF09986 DUF2225: Uncharacteri 72.8 0.82 1.8E-05 45.1 -1.0 12 109-120 49-61 (214)
77 PF02892 zf-BED: BED zinc fing 70.3 3.3 7.3E-05 30.1 2.0 25 3-27 14-42 (45)
78 COG4049 Uncharacterized protei 68.5 2.6 5.5E-05 33.2 1.1 25 105-129 14-39 (65)
79 PF04959 ARS2: Arsenite-resist 66.7 2.2 4.9E-05 42.3 0.6 29 78-106 74-103 (214)
80 TIGR02300 FYDLN_acid conserved 63.5 4.4 9.5E-05 37.0 1.7 29 82-120 10-39 (129)
81 PF09986 DUF2225: Uncharacteri 62.5 2.3 5E-05 42.0 -0.2 44 44-94 3-61 (214)
82 cd00350 rubredoxin_like Rubred 59.3 6.4 0.00014 27.3 1.6 10 80-89 16-25 (33)
83 PF09538 FYDLN_acid: Protein o 57.1 5.2 0.00011 35.5 1.1 32 46-95 9-40 (108)
84 PF02892 zf-BED: BED zinc fing 56.9 8.4 0.00018 28.0 2.0 25 78-102 13-41 (45)
85 TIGR00622 ssl1 transcription f 56.3 18 0.00038 32.5 4.3 91 3-104 13-104 (112)
86 smart00614 ZnF_BED BED zinc fi 56.1 7.5 0.00016 29.3 1.7 23 6-28 19-47 (50)
87 KOG4377 Zn-finger protein [Gen 55.4 6.1 0.00013 42.6 1.4 121 4-133 270-429 (480)
88 KOG2785 C2H2-type Zn-finger pr 54.8 17 0.00037 38.9 4.6 74 5-103 166-242 (390)
89 KOG4124 Putative transcription 53.9 2.7 5.9E-05 44.3 -1.4 24 3-26 347-372 (442)
90 PRK00464 nrdR transcriptional 53.5 2.8 6.1E-05 39.5 -1.3 17 81-97 28-44 (154)
91 cd00729 rubredoxin_SM Rubredox 51.4 8.3 0.00018 27.1 1.1 10 80-89 17-26 (34)
92 PF12013 DUF3505: Protein of u 50.1 33 0.00071 29.9 5.0 24 82-105 81-109 (109)
93 PRK00464 nrdR transcriptional 49.5 5.5 0.00012 37.5 0.0 15 108-122 28-43 (154)
94 COG1592 Rubrerythrin [Energy p 49.3 11 0.00024 36.0 2.0 13 76-88 144-156 (166)
95 COG1592 Rubrerythrin [Energy p 48.5 9.9 0.00021 36.4 1.5 23 80-114 133-156 (166)
96 TIGR02300 FYDLN_acid conserved 47.2 10 0.00022 34.7 1.3 35 46-98 9-43 (129)
97 PRK06266 transcription initiat 46.5 15 0.00033 35.3 2.5 33 79-119 115-148 (178)
98 smart00531 TFIIE Transcription 46.5 20 0.00042 33.2 3.1 38 79-119 97-135 (147)
99 COG4957 Predicted transcriptio 46.2 9.7 0.00021 35.2 1.0 34 109-145 77-111 (148)
100 TIGR00373 conserved hypothetic 45.9 18 0.00039 34.0 2.9 33 78-118 106-139 (158)
101 KOG2593 Transcription initiati 45.7 18 0.00039 39.3 3.1 36 78-115 125-161 (436)
102 COG1997 RPL43A Ribosomal prote 44.8 12 0.00026 32.1 1.3 14 80-93 52-65 (89)
103 KOG2932 E3 ubiquitin ligase in 44.1 71 0.0015 33.6 6.9 27 105-131 141-171 (389)
104 KOG1280 Uncharacterized conser 43.9 7.8 0.00017 40.9 0.1 33 79-111 77-110 (381)
105 COG1997 RPL43A Ribosomal prote 43.5 13 0.00028 31.9 1.3 32 80-120 34-66 (89)
106 PF14353 CpXC: CpXC protein 42.2 24 0.00052 31.6 3.0 16 109-124 39-55 (128)
107 PRK06266 transcription initiat 40.4 15 0.00032 35.4 1.3 38 39-92 110-147 (178)
108 PF13719 zinc_ribbon_5: zinc-r 39.8 22 0.00048 25.3 1.9 12 80-91 24-35 (37)
109 smart00531 TFIIE Transcription 39.5 18 0.0004 33.4 1.8 42 40-92 93-134 (147)
110 TIGR00373 conserved hypothetic 39.1 16 0.00036 34.3 1.4 38 39-92 102-139 (158)
111 KOG2295 C2H2 Zn-finger protein 38.8 2.1E+02 0.0046 32.4 9.9 50 95-144 492-548 (648)
112 KOG2186 Cell growth-regulating 38.5 19 0.00041 36.6 1.8 48 46-103 3-50 (276)
113 PF05290 Baculo_IE-1: Baculovi 38.5 7.3 0.00016 35.9 -1.0 9 44-52 78-86 (140)
114 PF02176 zf-TRAF: TRAF-type zi 38.1 18 0.00039 27.7 1.3 16 96-111 25-41 (60)
115 PF05443 ROS_MUCR: ROS/MUCR tr 38.1 18 0.00039 33.3 1.5 23 4-29 71-93 (132)
116 KOG4167 Predicted DNA-binding 38.1 8 0.00017 44.4 -0.9 26 4-29 791-816 (907)
117 PRK00398 rpoP DNA-directed RNA 38.0 15 0.00032 27.2 0.7 11 81-91 21-31 (46)
118 TIGR02098 MJ0042_CXXC MJ0042 f 38.0 23 0.00049 24.9 1.7 12 81-92 25-36 (38)
119 TIGR01562 FdhE formate dehydro 35.9 18 0.00038 37.9 1.2 11 43-53 207-217 (305)
120 PF15135 UPF0515: Uncharacteri 35.5 35 0.00075 34.7 3.1 59 43-120 109-168 (278)
121 PRK03564 formate dehydrogenase 34.9 15 0.00032 38.5 0.5 11 43-53 209-219 (309)
122 TIGR00622 ssl1 transcription f 34.7 36 0.00079 30.5 2.8 80 44-131 13-105 (112)
123 PF13717 zinc_ribbon_4: zinc-r 34.3 34 0.00074 24.3 2.1 11 81-91 25-35 (36)
124 PF06524 NOA36: NOA36 protein; 33.4 12 0.00027 38.1 -0.4 20 105-124 206-226 (314)
125 KOG2807 RNA polymerase II tran 33.2 57 0.0012 34.5 4.3 53 79-131 288-369 (378)
126 PRK09678 DNA-binding transcrip 33.2 15 0.00032 30.4 0.1 38 82-120 2-42 (72)
127 PTZ00255 60S ribosomal protein 32.7 18 0.00039 31.2 0.6 14 80-93 53-66 (90)
128 COG4530 Uncharacterized protei 32.6 27 0.00058 31.3 1.6 12 80-91 25-36 (129)
129 COG4530 Uncharacterized protei 32.5 22 0.00048 31.8 1.1 29 82-120 10-39 (129)
130 smart00734 ZnF_Rad18 Rad18-lik 32.2 36 0.00079 22.4 1.8 20 6-26 2-21 (26)
131 TIGR00280 L37a ribosomal prote 31.5 17 0.00037 31.4 0.2 13 80-92 52-64 (91)
132 COG5151 SSL1 RNA polymerase II 31.3 32 0.00069 36.1 2.1 25 80-104 387-411 (421)
133 PRK14873 primosome assembly pr 30.3 26 0.00056 40.5 1.5 26 76-116 405-431 (665)
134 PTZ00303 phosphatidylinositol 30.2 16 0.00035 42.5 -0.2 66 48-130 462-539 (1374)
135 PF07975 C1_4: TFIIH C1-like d 29.5 14 0.0003 28.6 -0.6 26 4-29 20-45 (51)
136 PRK14873 primosome assembly pr 29.3 18 0.0004 41.7 0.1 11 80-90 421-431 (665)
137 PRK03976 rpl37ae 50S ribosomal 28.7 31 0.00067 29.8 1.3 14 80-93 53-66 (90)
138 KOG2593 Transcription initiati 28.6 19 0.00041 39.1 0.0 39 42-90 124-162 (436)
139 COG1571 Predicted DNA-binding 28.5 31 0.00066 37.7 1.5 30 82-121 351-381 (421)
140 KOG3002 Zn finger protein [Gen 28.2 44 0.00095 34.9 2.6 25 87-112 116-140 (299)
141 KOG0978 E3 ubiquitin ligase in 28.0 21 0.00046 41.2 0.3 22 105-126 675-697 (698)
142 PRK09678 DNA-binding transcrip 27.9 22 0.00048 29.4 0.3 20 77-96 23-44 (72)
143 PF15135 UPF0515: Uncharacteri 27.9 29 0.00063 35.3 1.1 40 43-94 129-168 (278)
144 KOG4167 Predicted DNA-binding 27.4 16 0.00035 42.1 -0.8 25 81-105 792-816 (907)
145 COG3357 Predicted transcriptio 27.1 32 0.00068 29.8 1.1 14 4-17 57-70 (97)
146 PF04641 Rtf2: Rtf2 RING-finge 26.9 95 0.0021 31.4 4.7 24 4-28 46-69 (260)
147 COG1198 PriA Primosomal protei 26.7 31 0.00067 40.3 1.3 27 76-116 457-484 (730)
148 COG4957 Predicted transcriptio 26.3 34 0.00074 31.7 1.2 21 6-29 77-97 (148)
149 TIGR00595 priA primosomal prot 26.3 25 0.00053 39.2 0.4 17 76-92 235-251 (505)
150 COG2888 Predicted Zn-ribbon RN 26.2 42 0.00091 26.9 1.5 9 106-114 48-57 (61)
151 PF01780 Ribosomal_L37ae: Ribo 25.4 18 0.00039 31.2 -0.7 12 81-92 53-64 (90)
152 PRK04023 DNA polymerase II lar 25.4 60 0.0013 39.1 3.2 10 5-14 626-635 (1121)
153 PF02176 zf-TRAF: TRAF-type zi 25.0 53 0.0012 25.0 2.0 34 4-51 8-43 (60)
154 PRK14714 DNA polymerase II lar 24.7 55 0.0012 40.3 2.8 50 5-115 667-717 (1337)
155 COG1198 PriA Primosomal protei 24.6 21 0.00045 41.6 -0.6 13 78-90 472-484 (730)
156 PRK14890 putative Zn-ribbon RN 24.3 55 0.0012 26.1 1.9 8 107-114 47-55 (59)
157 PF15269 zf-C2H2_7: Zinc-finge 23.4 53 0.0011 24.9 1.5 22 82-103 21-42 (54)
158 TIGR02605 CxxC_CxxC_SSSS putat 23.2 29 0.00062 26.1 0.1 10 80-89 25-34 (52)
159 COG3677 Transposase and inacti 23.2 30 0.00066 31.6 0.3 16 79-94 51-66 (129)
160 KOG0696 Serine/threonine prote 22.8 32 0.00069 37.8 0.4 48 20-88 80-128 (683)
161 PF07800 DUF1644: Protein of u 22.7 1.7E+02 0.0038 27.9 5.2 20 10-29 31-50 (162)
162 PF15269 zf-C2H2_7: Zinc-finge 22.4 56 0.0012 24.8 1.5 24 5-28 20-43 (54)
163 TIGR00595 priA primosomal prot 22.3 43 0.00093 37.3 1.3 8 82-89 223-230 (505)
164 KOG0320 Predicted E3 ubiquitin 22.1 49 0.0011 32.1 1.5 14 41-54 126-139 (187)
165 COG1655 Uncharacterized protei 22.0 27 0.00059 35.2 -0.3 26 3-28 17-42 (267)
166 PF04810 zf-Sec23_Sec24: Sec23 21.8 26 0.00056 25.3 -0.3 21 71-91 14-34 (40)
167 PF03145 Sina: Seven in absent 21.6 60 0.0013 31.2 2.0 54 5-79 14-73 (198)
168 KOG0956 PHD finger protein AF1 21.4 4.4E+02 0.0096 30.9 8.8 9 5-13 62-70 (900)
169 COG1656 Uncharacterized conser 21.1 86 0.0019 30.0 2.8 21 80-100 129-149 (165)
170 COG1327 Predicted transcriptio 21.0 34 0.00073 32.3 0.1 18 80-97 27-44 (156)
171 PLN02705 beta-amylase 21.0 1.5E+02 0.0033 34.0 5.1 10 481-490 320-329 (681)
172 PF12760 Zn_Tnp_IS1595: Transp 20.4 50 0.0011 24.4 0.9 11 79-89 35-45 (46)
173 KOG0978 E3 ubiquitin ligase in 20.2 26 0.00056 40.5 -1.0 21 80-100 677-697 (698)
No 1
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.85 E-value=4.7e-22 Score=196.56 Aligned_cols=119 Identities=24% Similarity=0.477 Sum_probs=77.2
Q ss_pred CCcccccccCcccCChHHHHHHHHhcCC---Ccc---------------cccccccccccceeeCCCCCCCCCCCCCccC
Q 010444 3 TNRFVCEICNKGFQRDQNLQLHRRGHNL---PWK---------------LRQRTTTEVRKRVYICPEPSCVHHNPARALG 64 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H~r~H~~---p~k---------------~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~ 64 (510)
..+|+|..|+|.|.+.++|-+|+.+|.. +.. ++.+.++| .-+++|.+| +|+|.
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH--~l~c~C~iC-------GKaFS 198 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTH--TLPCECGIC-------GKAFS 198 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhcc--CCCcccccc-------ccccc
Confidence 3467888888888888888888877751 000 11111221 245666666 67777
Q ss_pred ChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHHh-CCCceecC-CCCcccChhHHHHHHHHh
Q 010444 65 DLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTC-GTREYKCD-CGTIFSRRDSFITHRAFC 130 (510)
Q Consensus 65 ~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rth-geKpykC~-Cgk~F~~kssL~~H~r~h 130 (510)
+...|+-|+|+|+|||||.|..|+|+|+.+++|+.|++|| +.|+|.|. |+|.|.+++.|.+|....
T Consensus 199 RPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 199 RPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA 266 (279)
T ss_pred chHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence 7777777777777777777777777777777777777775 66677776 777777777777776543
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.82 E-value=6.9e-21 Score=188.34 Aligned_cols=91 Identities=18% Similarity=0.407 Sum_probs=84.2
Q ss_pred ccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHHh-CCCceecC-CCCcccCh
Q 010444 43 RKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTC-GTREYKCD-CGTIFSRR 120 (510)
Q Consensus 43 ~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rth-geKpykC~-Cgk~F~~k 120 (510)
.++.+.|++| +|.|.....|+.|+|+|+ -+++|.+|||+|.+.+-|+.|+|+| |||||.|. |+|.|..+
T Consensus 158 s~ka~~C~~C-------~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 158 SKKAFSCKYC-------GKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred ccccccCCCC-------CceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 4788999998 999999999999999998 6899999999999999999999995 99999999 99999999
Q ss_pred hHHHHHHHHhccccccchhhhc
Q 010444 121 DSFITHRAFCDALAEENNKVNQ 142 (510)
Q Consensus 121 ssL~~H~r~hh~~~~~~~k~~~ 142 (510)
++|+.|+++|.......|..+.
T Consensus 229 SNLRAHmQTHS~~K~~qC~~C~ 250 (279)
T KOG2462|consen 229 SNLRAHMQTHSDVKKHQCPRCG 250 (279)
T ss_pred HHHHHHHHhhcCCccccCcchh
Confidence 9999999999888777666554
No 3
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.66 E-value=3.5e-17 Score=155.64 Aligned_cols=119 Identities=23% Similarity=0.525 Sum_probs=108.0
Q ss_pred CCcccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCccc
Q 010444 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKW 82 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~ 82 (510)
...|.|.+|+|.|.....|.+|++.|. ..|.|.|..| +|.|.+...|++|.|+|++.+||
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvrpy 174 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVRPY 174 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcccc
Confidence 456999999999999999999999997 6788999998 99999999999999999999999
Q ss_pred ccCcCCccccChhHHHHHHHH-hC-----------CCceecC-CCCcccChhHHHHHHHHhccccccchhhh
Q 010444 83 KCDKCSKKYAVQSDWKAHQKT-CG-----------TREYKCD-CGTIFSRRDSFITHRAFCDALAEENNKVN 141 (510)
Q Consensus 83 ~C~~CgK~F~~ks~Lk~H~rt-hg-----------eKpykC~-Cgk~F~~kssL~~H~r~hh~~~~~~~k~~ 141 (510)
+|..|+|.|+++..|..|++. |+ +|.|+|+ |+..-.+.+.+..|++.+|...+.-.+..
T Consensus 175 kc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~SpallKfs 246 (267)
T KOG3576|consen 175 KCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPALLKFS 246 (267)
T ss_pred chhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999999999986 65 3679999 99999999999999999997766655544
No 4
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.64 E-value=1.3e-16 Score=173.03 Aligned_cols=112 Identities=23% Similarity=0.540 Sum_probs=99.4
Q ss_pred ccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccC-------
Q 010444 6 FVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHG------- 78 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~g------- 78 (510)
..|++|.++|++...|+.|++..+ +..+..|.|..| .+.|.++..|.+|+.+|..
T Consensus 211 ltcpycdrgykrltslkeHikyrh-----------ekne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa~s 272 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRH-----------EKNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQAIS 272 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHH-----------hhCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCccccc
Confidence 579999999999999999998765 346778999999 8999999999999999862
Q ss_pred ------CcccccCcCCccccChhHHHHHHHHh-CCCceecC-CCCcccChhHHHHHHH--Hhccccc
Q 010444 79 ------EKKWKCDKCSKKYAVQSDWKAHQKTC-GTREYKCD-CGTIFSRRDSFITHRA--FCDALAE 135 (510)
Q Consensus 79 ------eKp~~C~~CgK~F~~ks~Lk~H~rth-geKpykC~-Cgk~F~~kssL~~H~r--~hh~~~~ 135 (510)
-|+|+|..|+|+|+.+-+|+.|+|+| |||||.|+ |.|+|+...++..|+. +|-.+..
T Consensus 273 ltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSKKCIsli~ 339 (1007)
T KOG3623|consen 273 LTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSKKCISLIL 339 (1007)
T ss_pred ccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccccchhhhhc
Confidence 47899999999999999999999996 99999999 9999999999999984 4444333
No 5
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.48 E-value=4.2e-15 Score=163.89 Aligned_cols=80 Identities=20% Similarity=0.455 Sum_probs=73.9
Q ss_pred ceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHHhCCCc-----eecC----CCC
Q 010444 45 RVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTRE-----YKCD----CGT 115 (510)
Q Consensus 45 kpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rthgeKp-----ykC~----Cgk 115 (510)
.+..|-+| -|++..++.|+.|+|+|+|||||+|++|+++|+.+.+||.|+.+|..|| |.|+ |.+
T Consensus 604 dPNqCiiC-------~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~ 676 (958)
T KOG1074|consen 604 DPNQCIIC-------LRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQK 676 (958)
T ss_pred Cccceeee-------eecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcc
Confidence 35688887 8999999999999999999999999999999999999999999997765 8887 999
Q ss_pred cccChhHHHHHHHHhc
Q 010444 116 IFSRRDSFITHRAFCD 131 (510)
Q Consensus 116 ~F~~kssL~~H~r~hh 131 (510)
.|...-.|..|++.|.
T Consensus 677 kftn~V~lpQhIriH~ 692 (958)
T KOG1074|consen 677 KFTNAVTLPQHIRIHL 692 (958)
T ss_pred cccccccccceEEeec
Confidence 9999999999999987
No 6
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.47 E-value=1e-14 Score=160.88 Aligned_cols=50 Identities=26% Similarity=0.602 Sum_probs=47.0
Q ss_pred cccCcCCccccChhHHHHHHHHh-CCCceecC-CCCcccChhHHHHHHHHhc
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTC-GTREYKCD-CGTIFSRRDSFITHRAFCD 131 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rth-geKpykC~-Cgk~F~~kssL~~H~r~hh 131 (510)
-.|-+|-|....++.|+.|+|+| |||||||+ |++.|.+|.+|+.|+-.|.
T Consensus 606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHk 657 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHK 657 (958)
T ss_pred cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccc
Confidence 36999999999999999999996 99999999 9999999999999998775
No 7
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.37 E-value=4.2e-13 Score=136.61 Aligned_cols=107 Identities=25% Similarity=0.489 Sum_probs=66.4
Q ss_pred CCcccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhh-hccCCcc
Q 010444 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFS-RKHGEKK 81 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r-~H~geKp 81 (510)
+++|.|..|.|.|.++..|+.|++.|- ..|+|+.| .......+.|.+|++ +|..+||
T Consensus 235 ~n~fqC~~C~KrFaTeklL~~Hv~rHv---------------n~ykCplC-------dmtc~~~ssL~~H~r~rHs~dkp 292 (467)
T KOG3608|consen 235 TNSFQCAQCFKRFATEKLLKSHVVRHV---------------NCYKCPLC-------DMTCSSASSLTTHIRYRHSKDKP 292 (467)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHhh---------------hccccccc-------ccCCCChHHHHHHHHhhhccCCC
Confidence 346666666666666666666666653 34666666 555666666666655 4555666
Q ss_pred cccCcCCccccChhHHHHHHHHhCCCceecC---CCCcccChhHHHHHHHHhc
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTCGTREYKCD---CGTIFSRRDSFITHRAFCD 131 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~---Cgk~F~~kssL~~H~r~hh 131 (510)
|+|+.|.++|.+.++|.+|..+|-+-.|.|+ |...|+++..|++|++.+|
T Consensus 293 fKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evh 345 (467)
T KOG3608|consen 293 FKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVH 345 (467)
T ss_pred ccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence 6666666666666666666666555556664 6666666666666665444
No 8
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.34 E-value=5e-13 Score=136.02 Aligned_cols=117 Identities=22% Similarity=0.425 Sum_probs=95.2
Q ss_pred cccc--ccCcccCChHHHHHHHHhcCCCccc-----------------ccccccccccceeeCCCCCCCCCCCCCccCCh
Q 010444 6 FVCE--ICNKGFQRDQNLQLHRRGHNLPWKL-----------------RQRTTTEVRKRVYICPEPSCVHHNPARALGDL 66 (510)
Q Consensus 6 y~C~--~CgK~F~~~s~Lk~H~r~H~~p~k~-----------------~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~ 66 (510)
+.|. .|-+.|..+.+|++|+|.|+.+..+ +.+-.......+|.|..| -|+|.+.
T Consensus 178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C-------~KrFaTe 250 (467)
T KOG3608|consen 178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQC-------FKRFATE 250 (467)
T ss_pred eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHH-------HHHHhHH
Confidence 4565 4889999999999999999744331 111122334568888888 8899999
Q ss_pred hHHHhHhhhccCCcccccCcCCccccChhHHHHHHHH-h-CCCceecC-CCCcccChhHHHHHHHHhc
Q 010444 67 TGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKT-C-GTREYKCD-CGTIFSRRDSFITHRAFCD 131 (510)
Q Consensus 67 s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rt-h-geKpykC~-Cgk~F~~kssL~~H~r~hh 131 (510)
..|+.|+++|- .-|+|+.|.-.....+.|..|+|. | ..|||||+ |.++|.+.+.|.+|..+|.
T Consensus 251 klL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS 316 (467)
T KOG3608|consen 251 KLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS 316 (467)
T ss_pred HHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence 99999998885 469999999999999999999999 6 88999999 9999999999999999875
No 9
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.31 E-value=4.7e-13 Score=145.81 Aligned_cols=80 Identities=21% Similarity=0.559 Sum_probs=75.9
Q ss_pred cccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHHh-CCCceecC-CCCcccC
Q 010444 42 VRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTC-GTREYKCD-CGTIFSR 119 (510)
Q Consensus 42 ~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rth-geKpykC~-Cgk~F~~ 119 (510)
+.+..|.|+.| .|+|...+.|.+|...|+|.|||+|.+|.|+|+.+-+|..|+|.| |||||.|+ |+|+|+.
T Consensus 890 te~gmyaCDqC-------DK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSH 962 (1007)
T KOG3623|consen 890 TEDGMYACDQC-------DKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSH 962 (1007)
T ss_pred CccccchHHHH-------HHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhccc
Confidence 35678999999 899999999999999999999999999999999999999999996 99999999 9999999
Q ss_pred hhHHHHHHH
Q 010444 120 RDSFITHRA 128 (510)
Q Consensus 120 kssL~~H~r 128 (510)
..++..||-
T Consensus 963 SGSYSQHMN 971 (1007)
T KOG3623|consen 963 SGSYSQHMN 971 (1007)
T ss_pred ccchHhhhc
Confidence 999999984
No 10
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.24 E-value=1.7e-12 Score=124.00 Aligned_cols=84 Identities=25% Similarity=0.496 Sum_probs=78.5
Q ss_pred ccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHHh-CCCceecC-CCCcccCh
Q 010444 43 RKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTC-GTREYKCD-CGTIFSRR 120 (510)
Q Consensus 43 ~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rth-geKpykC~-Cgk~F~~k 120 (510)
....|.|.+| +|.|.....|.+|++.|...|.|.|..|+|.|...-+|++|+|+| |.+||+|. |+|.|..+
T Consensus 114 d~d~ftCrvC-------gK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr 186 (267)
T KOG3576|consen 114 DQDSFTCRVC-------GKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR 186 (267)
T ss_pred CCCeeeeehh-------hhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence 3567999999 999999999999999999999999999999999999999999995 99999999 99999999
Q ss_pred hHHHHHHHHhccc
Q 010444 121 DSFITHRAFCDAL 133 (510)
Q Consensus 121 ssL~~H~r~hh~~ 133 (510)
-+|..|++.-|+.
T Consensus 187 csleshl~kvhgv 199 (267)
T KOG3576|consen 187 CSLESHLKKVHGV 199 (267)
T ss_pred ccHHHHHHHHcCc
Confidence 9999999876643
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.20 E-value=3.1e-11 Score=132.01 Aligned_cols=105 Identities=21% Similarity=0.429 Sum_probs=90.7
Q ss_pred CCcccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCccc
Q 010444 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKW 82 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~ 82 (510)
++.+.|++|++.|. ...|+.|++.|+ +++.|+ | ++.+ .+..|..|+++|..+|++
T Consensus 451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi 505 (567)
T PLN03086 451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLI 505 (567)
T ss_pred ccCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCce
Confidence 56789999999996 678999999874 579999 7 7655 678999999999999999
Q ss_pred ccCcCCcccc----------ChhHHHHHHHHhCCCceecC-CCCcccChhHHHHHHHHhccc
Q 010444 83 KCDKCSKKYA----------VQSDWKAHQKTCGTREYKCD-CGTIFSRRDSFITHRAFCDAL 133 (510)
Q Consensus 83 ~C~~CgK~F~----------~ks~Lk~H~rthgeKpykC~-Cgk~F~~kssL~~H~r~hh~~ 133 (510)
.|.+|++.|. ....|+.|.++++.+++.|. |++.|..+ .|..|+..+|..
T Consensus 506 ~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~~ 566 (567)
T PLN03086 506 TCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQK 566 (567)
T ss_pred eCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhcC
Confidence 9999999995 24589999999999999999 99999887 578899887753
No 12
>PHA00733 hypothetical protein
Probab=98.91 E-value=1.1e-09 Score=99.31 Aligned_cols=85 Identities=14% Similarity=0.252 Sum_probs=69.7
Q ss_pred ccceeeCCCCCCCCCCCCCccCChhHHHhH--h---hhccCCcccccCcCCccccChhHHHHHHHHhCCCceecC-CCCc
Q 010444 43 RKRVYICPEPSCVHHNPARALGDLTGIKKH--F---SRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTI 116 (510)
Q Consensus 43 ~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H--~---r~H~geKp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~ 116 (510)
..+++.|.+| .+.|.....|..| + ..++.++||+|+.|++.|.....|+.|++.+ +++|.|+ |++.
T Consensus 37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~ 108 (128)
T PHA00733 37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE 108 (128)
T ss_pred hhhhHHHHHH-------hhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence 4678999998 5666665555444 1 1334589999999999999999999999986 5689999 9999
Q ss_pred ccChhHHHHHHHHhccccc
Q 010444 117 FSRRDSFITHRAFCDALAE 135 (510)
Q Consensus 117 F~~kssL~~H~r~hh~~~~ 135 (510)
|.....|.+|++..|+++.
T Consensus 109 F~~~~sL~~H~~~~h~~~~ 127 (128)
T PHA00733 109 FRNTDSTLDHVCKKHNICV 127 (128)
T ss_pred cCCHHHHHHHHHHhcCccc
Confidence 9999999999999988763
No 13
>PHA00733 hypothetical protein
Probab=98.81 E-value=4.5e-09 Score=95.32 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCcccccccCcccCChHHHHHH--HHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCc
Q 010444 3 TNRFVCEICNKGFQRDQNLQLH--RRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEK 80 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H--~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geK 80 (510)
.+++.|.+|.+.|.....|..| ++.|. . ....++|.|+.| ++.|.....|..|++.| ++
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~---------~-~~~~kPy~C~~C-------gk~Fss~s~L~~H~r~h--~~ 98 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLL---------T-SKAVSPYVCPLC-------LMPFSSSVSLKQHIRYT--EH 98 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhc---------c-cCCCCCccCCCC-------CCcCCCHHHHHHHHhcC--Cc
Confidence 5789999999999999888887 33331 1 124789999999 99999999999999987 46
Q ss_pred ccccCcCCccccChhHHHHHHHH-hC
Q 010444 81 KWKCDKCSKKYAVQSDWKAHQKT-CG 105 (510)
Q Consensus 81 p~~C~~CgK~F~~ks~Lk~H~rt-hg 105 (510)
+|.|++|++.|.....|++|++. |+
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHHHhcC
Confidence 89999999999999999999988 64
No 14
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.57 E-value=1.3e-07 Score=104.05 Aligned_cols=122 Identities=19% Similarity=0.352 Sum_probs=89.2
Q ss_pred ccccccCcccCChHHHHHHHHhcCC-----Cc-ccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCC
Q 010444 6 FVCEICNKGFQRDQNLQLHRRGHNL-----PW-KLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGE 79 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~H~~-----p~-k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~ge 79 (510)
-+|..|.+.... .+|..|...... |. .+.........++.+.|+.| ++.|. ...|++|++.|+
T Consensus 408 V~C~NC~~~i~l-~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~C-------gk~f~-~s~LekH~~~~H-- 476 (567)
T PLN03086 408 VECRNCKHYIPS-RSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKC-------GQAFQ-QGEMEKHMKVFH-- 476 (567)
T ss_pred EECCCCCCccch-hHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCC-------CCccc-hHHHHHHHHhcC--
Confidence 469999887655 557889854421 10 12222233345677899998 88885 678999999986
Q ss_pred cccccCcCCccccChhHHHHHHHH-hCCCceecC-CCCcccC----------hhHHHHHHHHhccccccchhhh
Q 010444 80 KKWKCDKCSKKYAVQSDWKAHQKT-CGTREYKCD-CGTIFSR----------RDSFITHRAFCDALAEENNKVN 141 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ks~Lk~H~rt-hgeKpykC~-Cgk~F~~----------kssL~~H~r~hh~~~~~~~k~~ 141 (510)
+++.|+ |++.+ .+..|..|+++ +.+|++.|. |++.|.. ...|..|...| +.....|..+
T Consensus 477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~C 547 (567)
T PLN03086 477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSC 547 (567)
T ss_pred CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEcccc
Confidence 899999 99765 66899999998 699999999 9999952 35899999886 4444555433
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.51 E-value=4.7e-08 Score=75.80 Aligned_cols=41 Identities=20% Similarity=0.475 Sum_probs=25.6
Q ss_pred cccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccChhHH
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSRRDSF 123 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~kssL 123 (510)
|+|++|+|.|.+.++|..|+++|. ++|+|. |++.|.+.+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceeccccee
Confidence 566666666666666666666654 566666 66666655544
No 16
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.46 E-value=5.4e-08 Score=101.75 Aligned_cols=78 Identities=23% Similarity=0.494 Sum_probs=63.6
Q ss_pred ccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCC------
Q 010444 6 FVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGE------ 79 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~ge------ 79 (510)
|.|..|...|.....|-+|+.... ....|+|++| +|.|....+|..|.|.|.-.
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RI-------------V~vEYrCPEC-------~KVFsCPANLASHRRWHKPR~eaa~a 327 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRI-------------VHVEYRCPEC-------DKVFSCPANLASHRRWHKPRPEAAKA 327 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCee-------------EEeeecCCcc-------cccccCchhhhhhhcccCCchhhhhc
Confidence 889999999999999999975432 3456999998 89999999999999998621
Q ss_pred ---------------------------cccccCcCCccccChhHHHHHHHH
Q 010444 80 ---------------------------KKWKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 80 ---------------------------Kp~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
--|.|.+|+|+|.++..|+.|+-+
T Consensus 328 ~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlt 378 (500)
T KOG3993|consen 328 GSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLT 378 (500)
T ss_pred CCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHh
Confidence 137888899999998888888654
No 17
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.31 E-value=3.6e-07 Score=95.73 Aligned_cols=85 Identities=19% Similarity=0.425 Sum_probs=73.5
Q ss_pred ceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHHhCCC-----------------
Q 010444 45 RVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTR----------------- 107 (510)
Q Consensus 45 kpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rthgeK----------------- 107 (510)
..|.|..| ...|.+...|.+|...-...-.|+|+.|+|.|....+|..|.|+|.-|
T Consensus 266 GdyiCqLC-------K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ 338 (500)
T KOG3993|consen 266 GDYICQLC-------KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET 338 (500)
T ss_pred HHHHHHHH-------HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence 45999999 899999999999988766667899999999999999999999987321
Q ss_pred -----------------ceecC-CCCcccChhHHHHHHHHhcccccc
Q 010444 108 -----------------EYKCD-CGTIFSRRDSFITHRAFCDALAEE 136 (510)
Q Consensus 108 -----------------pykC~-Cgk~F~~kssL~~H~r~hh~~~~~ 136 (510)
.|.|. |+|.|++...|++|+..|+.....
T Consensus 339 rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~ 385 (500)
T KOG3993|consen 339 RAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLA 385 (500)
T ss_pred hhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccc
Confidence 28899 999999999999999998765433
No 18
>PHA02768 hypothetical protein; Provisional
Probab=98.25 E-value=4.1e-07 Score=70.61 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=40.7
Q ss_pred eeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHH
Q 010444 46 VYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWK 98 (510)
Q Consensus 46 py~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk 98 (510)
-|.|++| ++.|.....|.+|+++|+ ++|+|..|+|.|.+.+.|.
T Consensus 5 ~y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 4899999 999999999999999999 7999999999999888764
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.11 E-value=1.3e-06 Score=57.72 Aligned_cols=26 Identities=31% Similarity=0.822 Sum_probs=22.1
Q ss_pred HHHhHhhhccCCcccccCcCCccccC
Q 010444 68 GIKKHFSRKHGEKKWKCDKCSKKYAV 93 (510)
Q Consensus 68 ~Lk~H~r~H~geKp~~C~~CgK~F~~ 93 (510)
+|.+|+++|+++|||+|++|+|+|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 47889999999999999999998863
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.72 E-value=2.2e-05 Score=51.86 Aligned_cols=24 Identities=42% Similarity=0.956 Sum_probs=21.7
Q ss_pred HHHHHHHHh-CCCceecC-CCCcccC
Q 010444 96 DWKAHQKTC-GTREYKCD-CGTIFSR 119 (510)
Q Consensus 96 ~Lk~H~rth-geKpykC~-Cgk~F~~ 119 (510)
+|++|+++| ++|||+|+ |++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 589999995 99999999 9999974
No 21
>PHA00616 hypothetical protein
Probab=97.70 E-value=1.5e-05 Score=59.27 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=31.1
Q ss_pred cccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCC
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPE 51 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~ 51 (510)
||+|..||+.|..++.|.+|++.|+ +++++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence 7999999999999999999999998 778888764
No 22
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.59 E-value=1.6e-05 Score=80.98 Aligned_cols=50 Identities=30% Similarity=0.646 Sum_probs=34.4
Q ss_pred CcccccCc--CCccccChhHHHHHHHH-h-------------------CCCceecC-CCCcccChhHHHHHHH
Q 010444 79 EKKWKCDK--CSKKYAVQSDWKAHQKT-C-------------------GTREYKCD-CGTIFSRRDSFITHRA 128 (510)
Q Consensus 79 eKp~~C~~--CgK~F~~ks~Lk~H~rt-h-------------------geKpykC~-Cgk~F~~kssL~~H~r 128 (510)
+|||+|++ |.|+|+.+.-|+-|+.. | ..|||+|+ |+|+|+....|+-|++
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 36666655 66666666666666553 2 24888888 8888888888888764
No 23
>PHA00732 hypothetical protein
Probab=97.58 E-value=5.3e-05 Score=63.33 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=33.3
Q ss_pred cccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhcc
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKH 77 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~ 77 (510)
||+|++|++.|.+...|+.|++.++ . ++.|+.| ++.|. .|..|++++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H-------------~--~~~C~~C-------gKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNH-------------T--LTKCPVC-------NKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhccc-------------C--CCccCCC-------CCEeC---ChhhhhcccC
Confidence 5788888888888888888887432 1 2467777 77776 4667776554
No 24
>PHA00616 hypothetical protein
Probab=97.58 E-value=3.1e-05 Score=57.58 Aligned_cols=32 Identities=9% Similarity=0.311 Sum_probs=16.9
Q ss_pred ccccCcCCccccChhHHHHHHHH-hCCCceecC
Q 010444 81 KWKCDKCSKKYAVQSDWKAHQKT-CGTREYKCD 112 (510)
Q Consensus 81 p~~C~~CgK~F~~ks~Lk~H~rt-hgeKpykC~ 112 (510)
||+|..|++.|..++.|..|++. |+++++.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 34555555555555555555555 455555544
No 25
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.52 E-value=2.3e-05 Score=79.83 Aligned_cols=56 Identities=29% Similarity=0.679 Sum_probs=47.8
Q ss_pred ccceeeCCCCCCCCCCCCCccCChhHHHhHhhhcc-------------------CCcccccCcCCccccChhHHHHHHHH
Q 010444 43 RKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKH-------------------GEKKWKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 43 ~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~-------------------geKp~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
.+|||+|++.+| .|.|+....|+-|+.-=| ..|||+|++|+|+|+...-|+-|...
T Consensus 346 d~KpykCpV~gC-----~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~H 420 (423)
T COG5189 346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKH 420 (423)
T ss_pred cCceecCCCCCc-----hhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccc
Confidence 359999999999 999999999999976322 25899999999999999999988653
No 26
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00079 Score=75.55 Aligned_cols=124 Identities=18% Similarity=0.261 Sum_probs=82.7
Q ss_pred ccccccCccc---------------CChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCC--CCCCccCChhH
Q 010444 6 FVCEICNKGF---------------QRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHH--NPARALGDLTG 68 (510)
Q Consensus 6 y~C~~CgK~F---------------~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~--~~~k~F~~~s~ 68 (510)
+.|.+|.+.| .....|+.|++.-| +.+.|.+|-|..- ...+..-+...
T Consensus 100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H---------------~~~~c~lC~~~~kif~~e~k~Yt~~e 164 (669)
T KOG2231|consen 100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQH---------------KLHLCSLCLQNLKIFINERKLYTRAE 164 (669)
T ss_pred hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhh---------------hhhccccccccceeeeeeeehehHHH
Confidence 5666666666 37778999985433 2345555533110 11233345667
Q ss_pred HHhHhhhcc-CCc----ccccCcCCccccChhHHHHHHHHhCCCceecC----CCCcccChhHHHHHHHHhccccccchh
Q 010444 69 IKKHFSRKH-GEK----KWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD----CGTIFSRRDSFITHRAFCDALAEENNK 139 (510)
Q Consensus 69 Lk~H~r~H~-geK----p~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~----Cgk~F~~kssL~~H~r~hh~~~~~~~k 139 (510)
|..|+..-. +++ .-.|..|...|.....|.+|++.+.+-.+-|+ |..-|...+.|..|.|..|-+|+...+
T Consensus 165 l~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE~~~C 244 (669)
T KOG2231|consen 165 LNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCEEEFC 244 (669)
T ss_pred HHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcCcccccccc
Confidence 777766322 122 24699999999999999999998444445563 677888999999999999988887666
Q ss_pred hhchh
Q 010444 140 VNQGL 144 (510)
Q Consensus 140 ~~~~l 144 (510)
....+
T Consensus 245 ~~~~f 249 (669)
T KOG2231|consen 245 RTKKF 249 (669)
T ss_pred cccee
Confidence 55543
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.40 E-value=0.0002 Score=55.30 Aligned_cols=52 Identities=19% Similarity=0.452 Sum_probs=31.3
Q ss_pred cccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhcc
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKH 77 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~ 77 (510)
.|.|++|++ .-+...|..|....+ ....+.+.||+| ...+. .+|.+|+..++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H-----------~~~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEH-----------RSESKNVVCPIC-------SSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHC-----------cCCCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence 477888888 444567888866554 112345777777 34332 36666666554
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.38 E-value=0.00023 Score=54.97 Aligned_cols=46 Identities=22% Similarity=0.438 Sum_probs=21.1
Q ss_pred cccCcCCccccChhHHHHHHHH-h--CCCceecC-CCCcccChhHHHHHHHHh
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKT-C--GTREYKCD-CGTIFSRRDSFITHRAFC 130 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rt-h--geKpykC~-Cgk~F~~kssL~~H~r~h 130 (510)
|.|++|++ ......|..|... | ..+.+.|+ |...+. ..|..|++..
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~ 52 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ 52 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence 44555555 3333445555544 3 12345555 554333 2455555444
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.37 E-value=9.7e-05 Score=46.80 Aligned_cols=23 Identities=43% Similarity=0.908 Sum_probs=21.8
Q ss_pred ccccccCcccCChHHHHHHHHhc
Q 010444 6 FVCEICNKGFQRDQNLQLHRRGH 28 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~H 28 (510)
|+|++|++.|.++..|+.|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 79999999999999999999875
No 30
>PHA00732 hypothetical protein
Probab=97.32 E-value=0.00014 Score=60.78 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=32.9
Q ss_pred eeeCCCCCCCCCCCCCccCChhHHHhHhhh-ccCCcccccCcCCccccChhHHHHHHHH
Q 010444 46 VYICPEPSCVHHNPARALGDLTGIKKHFSR-KHGEKKWKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 46 py~C~~C~C~~~~~~k~F~~~s~Lk~H~r~-H~geKp~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
||.|+.| ++.|.....|++|++. |. ++.|++|++.|. .|..|.++
T Consensus 1 py~C~~C-------gk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPIC-------GFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCCC-------CCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence 4678887 7888888888888774 43 357888888887 46777765
No 31
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.11 E-value=0.00033 Score=58.88 Aligned_cols=72 Identities=18% Similarity=0.480 Sum_probs=19.5
Q ss_pred cccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCc
Q 010444 7 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDK 86 (510)
Q Consensus 7 ~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~ 86 (510)
+|.+|+..|.....|..|++..+ . +..+. ...+.....+..+.+.. -...|.|.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H-------------~---~~~~~--------~~~l~~~~~~~~~~~~~-~~~~~~C~~ 55 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKH-------------G---FDIPD--------QKYLVDPNRLLNYLRKK-VKESFRCPY 55 (100)
T ss_dssp -------------------------------------------------------------------------SSEEBSS
T ss_pred Ccccccccccccccccccccccc-------------c---ccccc--------ccccccccccccccccc-cCCCCCCCc
Confidence 59999999999999999987654 0 01111 11222333333343322 123688888
Q ss_pred CCccccChhHHHHHHHH
Q 010444 87 CSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 87 CgK~F~~ks~Lk~H~rt 103 (510)
|++.|.....|+.|++.
T Consensus 56 C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 56 CNKTFRSREALQEHMRS 72 (100)
T ss_dssp SS-EESSHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHcC
Confidence 88888888888888887
No 32
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.92 E-value=0.00057 Score=42.83 Aligned_cols=24 Identities=42% Similarity=0.901 Sum_probs=20.5
Q ss_pred ccccccCcccCChHHHHHHHHhcC
Q 010444 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
|+|++|++.|.+...|+.|++.|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999999874
No 33
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.88 E-value=0.00063 Score=43.01 Aligned_cols=22 Identities=32% Similarity=0.783 Sum_probs=11.5
Q ss_pred cccCcCCccccChhHHHHHHHH
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
|+|++|++.|..+..|+.|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 3455555555555555555543
No 34
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.77 E-value=0.00077 Score=44.28 Aligned_cols=25 Identities=36% Similarity=0.711 Sum_probs=23.6
Q ss_pred cccccccCcccCChHHHHHHHHhcC
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
||+|.+|++.|.....|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 6999999999999999999999885
No 35
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.38 E-value=0.0024 Score=53.62 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=22.1
Q ss_pred eCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccChhHHHHH
Q 010444 48 ICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSRRDSFITH 126 (510)
Q Consensus 48 ~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~kssL~~H 126 (510)
.|..| +..|.+...|..|+...++...- ..+.+.....+..+.+..-...+.|. |++.|.....|..|
T Consensus 1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H 69 (100)
T PF12756_consen 1 QCLFC-------DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH 69 (100)
T ss_dssp -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred Ccccc-------ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence 47887 88999999999999876653211 11222233444444444223479999 99999999999999
Q ss_pred HHHhcc
Q 010444 127 RAFCDA 132 (510)
Q Consensus 127 ~r~hh~ 132 (510)
++.+..
T Consensus 70 m~~~~H 75 (100)
T PF12756_consen 70 MRSKHH 75 (100)
T ss_dssp HHHTTT
T ss_pred HcCccC
Confidence 997643
No 36
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.19 E-value=0.0041 Score=38.85 Aligned_cols=22 Identities=27% Similarity=0.771 Sum_probs=11.6
Q ss_pred cccCcCCccccChhHHHHHHHH
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
|.|++|++.|..+..|+.|+++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 4556666666666666655554
No 37
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.00 E-value=0.005 Score=38.81 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=22.3
Q ss_pred ccccccCcccCChHHHHHHHHhcC
Q 010444 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
|+|+.|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 789999999999999999999774
No 38
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.98 E-value=0.0051 Score=63.77 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=74.0
Q ss_pred cccccc--cCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccC------ChhHHHhHhhhc
Q 010444 5 RFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALG------DLTGIKKHFSRK 76 (510)
Q Consensus 5 py~C~~--CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~------~~s~Lk~H~r~H 76 (510)
.|.|+. |.........|+.|.+..+ ..+.|.+|- ...+.|. ++..|..|...=
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H---------------~~~~C~~C~----~nKk~F~~E~~lF~~~~Lr~H~~~G 211 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQH---------------GFVLCSECI----GNKKDFWNEIRLFRSSTLRDHKNGG 211 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhc---------------CcEEhHhhh----cCcccCccceeeeecccccccccCC
Confidence 477874 7777666888999988764 234555551 1123332 345566665433
Q ss_pred cCCcc----cccCcCCccccChhHHHHHHHHhCCCceecC-----CCCcccChhHHHHHHHHhcccc
Q 010444 77 HGEKK----WKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-----CGTIFSRRDSFITHRAFCDALA 134 (510)
Q Consensus 77 ~geKp----~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-----Cgk~F~~kssL~~H~r~hh~~~ 134 (510)
..+.- -.|..|.+.|..-+.|.+|+|.-.|+-|.|+ -.+-|+...+|..|.+.-|-.+
T Consensus 212 ~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~c 278 (493)
T COG5236 212 LEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCC 278 (493)
T ss_pred ccccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCceEE
Confidence 32322 2599999999999999999998557778886 2355888899999988655444
No 39
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=95.74 E-value=0.0045 Score=40.61 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=10.9
Q ss_pred eecC-CCCcccChhHHHHHHHHh
Q 010444 109 YKCD-CGTIFSRRDSFITHRAFC 130 (510)
Q Consensus 109 ykC~-Cgk~F~~kssL~~H~r~h 130 (510)
|.|+ |++.|.....|..|++.|
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 4454 555555555555554443
No 40
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.73 E-value=0.014 Score=69.43 Aligned_cols=24 Identities=13% Similarity=0.372 Sum_probs=18.7
Q ss_pred eecC-CCCcccChhHHHHHHHHhcc
Q 010444 109 YKCD-CGTIFSRRDSFITHRAFCDA 132 (510)
Q Consensus 109 ykC~-Cgk~F~~kssL~~H~r~hh~ 132 (510)
+.|+ |.+.-.-...|+.|+.--+.
T Consensus 590 ~~C~vc~yetniarnlrihmtss~~ 614 (1406)
T KOG1146|consen 590 WRCEVCSYETNIARNLRIHMTASPS 614 (1406)
T ss_pred cchhhhcchhhhhhccccccccCCC
Confidence 7888 98888888888888865443
No 41
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=95.55 E-value=0.0088 Score=45.88 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=20.7
Q ss_pred CCcccccCcCCccccChhHHHHHHHH-hCCCc
Q 010444 78 GEKKWKCDKCSKKYAVQSDWKAHQKT-CGTRE 108 (510)
Q Consensus 78 geKp~~C~~CgK~F~~ks~Lk~H~rt-hgeKp 108 (510)
.+.|-.|++|+..+.+..+|++|+.+ |+.||
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 56788888888888888888888887 77765
No 42
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=95.11 E-value=0.0044 Score=63.81 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=69.2
Q ss_pred CcccccccCcccCChHHHHHHHH--hcCCCccccccccccccc--ceeeCC--CCCCCCCCCCCccCChhHHHhHhhhcc
Q 010444 4 NRFVCEICNKGFQRDQNLQLHRR--GHNLPWKLRQRTTTEVRK--RVYICP--EPSCVHHNPARALGDLTGIKKHFSRKH 77 (510)
Q Consensus 4 kpy~C~~CgK~F~~~s~Lk~H~r--~H~~p~k~~~~~~~~~~e--kpy~C~--~C~C~~~~~~k~F~~~s~Lk~H~r~H~ 77 (510)
.++.|..|...|.+...|.+|.+ .|. .+ +++.|+ .| .+.|.....+.+|...|.
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~ 347 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT 347 (467)
T ss_pred cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence 36788888888888888888888 565 56 788888 56 788888888888888888
Q ss_pred CCcccccCc--CCccccChhHH----HHHHHH--hCCCceecC---CCCcccChhHHHHHHHHh
Q 010444 78 GEKKWKCDK--CSKKYAVQSDW----KAHQKT--CGTREYKCD---CGTIFSRRDSFITHRAFC 130 (510)
Q Consensus 78 geKp~~C~~--CgK~F~~ks~L----k~H~rt--hgeKpykC~---Cgk~F~~kssL~~H~r~h 130 (510)
..++++|.. |.+.+.....- ..+.+. +..+.+.|. |-..+.+...+..|...+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (467)
T COG5048 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITH 411 (467)
T ss_pred CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccc
Confidence 777776644 55544444331 111111 344555554 656666665555555444
No 43
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.89 E-value=0.014 Score=37.45 Aligned_cols=23 Identities=43% Similarity=0.980 Sum_probs=21.5
Q ss_pred ccccccCcccCChHHHHHHHHhc
Q 010444 6 FVCEICNKGFQRDQNLQLHRRGH 28 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~H 28 (510)
|.|++|++.|.....|+.|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999865
No 44
>PRK04860 hypothetical protein; Provisional
Probab=94.85 E-value=0.014 Score=55.16 Aligned_cols=36 Identities=25% Similarity=0.761 Sum_probs=23.8
Q ss_pred ccccCcCCccccChhHHHHHHHHh-CCCceecC-CCCcccCh
Q 010444 81 KWKCDKCSKKYAVQSDWKAHQKTC-GTREYKCD-CGTIFSRR 120 (510)
Q Consensus 81 p~~C~~CgK~F~~ks~Lk~H~rth-geKpykC~-Cgk~F~~k 120 (510)
+|.|. |++ ....+++|.++| ++++|+|. |++.|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 56776 766 555667777774 66777776 77766554
No 45
>smart00355 ZnF_C2H2 zinc finger.
Probab=94.65 E-value=0.028 Score=35.29 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=12.7
Q ss_pred cccCcCCccccChhHHHHHHHH
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
|+|..|++.|.....|..|++.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~ 22 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHH
Confidence 3555666666666666655554
No 46
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=93.95 E-value=0.039 Score=42.40 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=20.3
Q ss_pred CCcccccccCcccCChHHHHHHHHhcC
Q 010444 3 TNRFVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
+.|-.|++|+..+.+..+|++|+..++
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H 48 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRH 48 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHh
Confidence 568899999999999999999998776
No 47
>PRK04860 hypothetical protein; Provisional
Probab=93.87 E-value=0.033 Score=52.69 Aligned_cols=41 Identities=17% Similarity=0.465 Sum_probs=34.8
Q ss_pred cceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChh
Q 010444 44 KRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQS 95 (510)
Q Consensus 44 ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks 95 (510)
.-+|.|. | .+ ....+++|.++|+++++|+|..|++.|....
T Consensus 117 ~~~Y~C~-C-------~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 117 TFPYRCK-C-------QE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEEcC-C-------CC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 3579997 7 54 6678899999999999999999999987654
No 48
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=93.81 E-value=0.081 Score=55.12 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=65.8
Q ss_pred cccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhcc-------
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKH------- 77 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~------- 77 (510)
++.|-+|.|.|+.+..|+.|||.-.- .+.-...+.-.+.|.-..- ..-++......|.++.+
T Consensus 195 r~~CLyCekifrdkntLkeHMrkK~H---rrinPknreYDkfyiINY~--------ev~ks~t~~~~e~dret~~d~~E~ 263 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRKKRH---RRINPKNREYDKFYIINYL--------EVGKSWTIVHSEDDRETNEDINET 263 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHhccC---cccCCCccccceEEEEeHh--------hcCCccchhhhhhhhhhhcccccc
Confidence 68999999999999999999986420 0000011112233333221 11111111222221111
Q ss_pred ----------CCcc--cccCcCCccccChhHHHHHHHH-hCC---------------------------CceecC-CCCc
Q 010444 78 ----------GEKK--WKCDKCSKKYAVQSDWKAHQKT-CGT---------------------------REYKCD-CGTI 116 (510)
Q Consensus 78 ----------geKp--~~C~~CgK~F~~ks~Lk~H~rt-hge---------------------------KpykC~-Cgk~ 116 (510)
+..+ .+|-.|.+.+.....|..||++ |.- +.-.|. |...
T Consensus 264 D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~ 343 (423)
T KOG2482|consen 264 DDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLS 343 (423)
T ss_pred ccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccccccc
Confidence 1122 4899999999999999999997 521 112244 7778
Q ss_pred ccChhHHHHHHHHh
Q 010444 117 FSRRDSFITHRAFC 130 (510)
Q Consensus 117 F~~kssL~~H~r~h 130 (510)
|.....|..|+.-+
T Consensus 344 F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 344 FWKEPGLLIHMVED 357 (423)
T ss_pred ccCcchhhhhcccc
Confidence 88888888887543
No 49
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=93.56 E-value=0.021 Score=58.82 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=65.4
Q ss_pred CC--Cccccc--ccCcccCChHHHHHHHHhcCCCcccc----------------------cccccccccceeeCCCCCCC
Q 010444 2 AT--NRFVCE--ICNKGFQRDQNLQLHRRGHNLPWKLR----------------------QRTTTEVRKRVYICPEPSCV 55 (510)
Q Consensus 2 ge--kpy~C~--~CgK~F~~~s~Lk~H~r~H~~p~k~~----------------------~~~~~~~~ekpy~C~~C~C~ 55 (510)
++ +++.|+ .|++.|.+...|+.|...|....... .........+.+.|..-.|
T Consensus 316 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 394 (467)
T COG5048 316 GESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSC- 394 (467)
T ss_pred cccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCccchhhccCccCCccccccccch-
Confidence 45 899999 79999999999999999997211000 0000011223333433333
Q ss_pred CCCCCCccCChhHHHhHhhhccCCc--ccccCcCCccccChhHHHHHHHHh-CCCceecCCCCcccChhHH
Q 010444 56 HHNPARALGDLTGIKKHFSRKHGEK--KWKCDKCSKKYAVQSDWKAHQKTC-GTREYKCDCGTIFSRRDSF 123 (510)
Q Consensus 56 ~~~~~k~F~~~s~Lk~H~r~H~geK--p~~C~~CgK~F~~ks~Lk~H~rth-geKpykC~Cgk~F~~kssL 123 (510)
.+.+.....+..|...|...+ .+.|..|.+.|.....+..|++.+ ...++.|.|-+.|.....+
T Consensus 395 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (467)
T COG5048 395 ----IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDL 461 (467)
T ss_pred ----hhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCceeeccccccchhhhh
Confidence 455555555566655555544 344455666666666666666664 3333333344444443333
No 50
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.85 Score=51.90 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=47.5
Q ss_pred CChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCC------c
Q 010444 16 QRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCS------K 89 (510)
Q Consensus 16 ~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~Cg------K 89 (510)
.+...|.+|++.-.. ....+.+ .-.|..| ...|-+...|.+|++.++ |.|.+|. .
T Consensus 160 Yt~~el~~h~~~gd~------d~~s~rG--hp~C~~C-------~~~fld~~el~rH~~~~h----~~chfC~~~~~~ne 220 (669)
T KOG2231|consen 160 YTRAELNLHLMFGDP------DDESCRG--HPLCKFC-------HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNE 220 (669)
T ss_pred ehHHHHHHHHhcCCC------ccccccC--Cccchhh-------hhhhccHHHHHHhhccce----eheeecCcccccch
Confidence 344567777765430 0011111 2367887 899999999999999876 6777774 4
Q ss_pred cccChhHHHHHHHH
Q 010444 90 KYAVQSDWKAHQKT 103 (510)
Q Consensus 90 ~F~~ks~Lk~H~rt 103 (510)
.|....+|..|.|.
T Consensus 221 yy~~~~dLe~HfR~ 234 (669)
T KOG2231|consen 221 YYNDYDDLEEHFRK 234 (669)
T ss_pred hcccchHHHHHhhh
Confidence 58888999999987
No 51
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=92.55 E-value=0.071 Score=34.02 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=19.0
Q ss_pred ccccccCcccCChHHHHHHHHhcC
Q 010444 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
|+|+.|..... +..|++|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 79999999998 899999999874
No 52
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=92.50 E-value=0.036 Score=36.60 Aligned_cols=24 Identities=29% Similarity=0.787 Sum_probs=21.1
Q ss_pred cccccccCcccCChHHHHHHHHhc
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGH 28 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H 28 (510)
.|.|..|++.|.....|+.|++..
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCCcccCCCCcCCHHHHHHHHccC
Confidence 488999999999999999998754
No 53
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=92.16 E-value=0.07 Score=34.18 Aligned_cols=21 Identities=24% Similarity=0.770 Sum_probs=11.6
Q ss_pred cccCcCCccccChhHHHHHHH
Q 010444 82 WKCDKCSKKYAVQSDWKAHQK 102 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~r 102 (510)
|.|++|++.|.....|+.|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 345555555555555555554
No 54
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=91.81 E-value=0.071 Score=63.70 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=26.0
Q ss_pred hCCCceecC-CCCcccChhHHHHHHHHhcccc
Q 010444 104 CGTREYKCD-CGTIFSRRDSFITHRAFCDALA 134 (510)
Q Consensus 104 hgeKpykC~-Cgk~F~~kssL~~H~r~hh~~~ 134 (510)
++.+||.|. |...+..+..|..|++.+-...
T Consensus 514 ~~~~p~~C~~C~~stttng~LsihlqS~~h~~ 545 (1406)
T KOG1146|consen 514 CPGKPYPCRACNYSTTTNGNLSIHLQSDLHRN 545 (1406)
T ss_pred CCCCcccceeeeeeeecchHHHHHHHHHhhHH
Confidence 456889999 9999999999999998765443
No 55
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=90.80 E-value=0.2 Score=31.85 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=10.1
Q ss_pred cccCcCCccccChhHHHHHHHH
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
|+|+.|..... +..|++|+++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~ 21 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKR 21 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHh
Confidence 45555555554 5555555554
No 56
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.42 E-value=0.71 Score=48.42 Aligned_cols=73 Identities=19% Similarity=0.407 Sum_probs=54.0
Q ss_pred eeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCc-------cccChhHHHHHHHHhCCCceecC---CC--
Q 010444 47 YICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSK-------KYAVQSDWKAHQKTCGTREYKCD---CG-- 114 (510)
Q Consensus 47 y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK-------~F~~ks~Lk~H~rthgeKpykC~---Cg-- 114 (510)
-.|..| ...|-+...|.+|+|..|. +|-+|++ .|+.-..|.+|.+. .-|.|. |-
T Consensus 221 P~C~FC-------~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~---~hy~ct~qtc~~~ 286 (493)
T COG5236 221 PLCIFC-------KIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRN---AHYCCTFQTCRVG 286 (493)
T ss_pred chhhhc-------cceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhc---CceEEEEEEEecC
Confidence 368888 8999999999999997662 4666655 37788888888775 236674 53
Q ss_pred --CcccChhHHHHHHHHhccc
Q 010444 115 --TIFSRRDSFITHRAFCDAL 133 (510)
Q Consensus 115 --k~F~~kssL~~H~r~hh~~ 133 (510)
..|.....|..|+..-|+.
T Consensus 287 k~~vf~~~~el~~h~~~~h~~ 307 (493)
T COG5236 287 KCYVFPYHTELLEHLTRFHKV 307 (493)
T ss_pred cEEEeccHHHHHHHHHHHhhc
Confidence 5688888999998766543
No 57
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=89.27 E-value=0.57 Score=49.66 Aligned_cols=118 Identities=20% Similarity=0.347 Sum_probs=82.6
Q ss_pred cccccccCcccCChHHHHHHHHhcCCCcccc------------------------cccccccccceeeCCCCCCCCCCCC
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLR------------------------QRTTTEVRKRVYICPEPSCVHHNPA 60 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~------------------------~~~~~~~~ekpy~C~~C~C~~~~~~ 60 (510)
-|+|.-|...|.....-+.|.++-.-.++++ .....+..+-++.|.+| .
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c-------~ 75 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEAC-------N 75 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHh-------h
Confidence 4899999999999988888987653222211 11112456778999999 7
Q ss_pred CccCChhHHHhHhhhcc---------------------------------C-----------------------------
Q 010444 61 RALGDLTGIKKHFSRKH---------------------------------G----------------------------- 78 (510)
Q Consensus 61 k~F~~~s~Lk~H~r~H~---------------------------------g----------------------------- 78 (510)
|.|........|+.... +
T Consensus 76 k~~~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~ 155 (390)
T KOG2785|consen 76 KSFASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIE 155 (390)
T ss_pred ccccChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhh
Confidence 88887666666654210 0
Q ss_pred --------CcccccCcCCccccChhHHHHHHHH-hCC-----------------------CceecC-CC---CcccChhH
Q 010444 79 --------EKKWKCDKCSKKYAVQSDWKAHQKT-CGT-----------------------REYKCD-CG---TIFSRRDS 122 (510)
Q Consensus 79 --------eKp~~C~~CgK~F~~ks~Lk~H~rt-hge-----------------------KpykC~-Cg---k~F~~kss 122 (510)
.-|-.|-.|.+.+..-..-..||.. |+- +-|.|- |. +.|..-..
T Consensus 156 ~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~slea 235 (390)
T KOG2785|consen 156 EDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEA 235 (390)
T ss_pred hccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHH
Confidence 0124588899999998888889987 542 226787 87 88999999
Q ss_pred HHHHHHH
Q 010444 123 FITHRAF 129 (510)
Q Consensus 123 L~~H~r~ 129 (510)
.+.||+.
T Consensus 236 vr~HM~~ 242 (390)
T KOG2785|consen 236 VRAHMRD 242 (390)
T ss_pred HHHHHhh
Confidence 9999864
No 58
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=88.86 E-value=0.11 Score=34.25 Aligned_cols=21 Identities=33% Similarity=0.787 Sum_probs=10.9
Q ss_pred cccCcCCccccChhHHHHHHH
Q 010444 82 WKCDKCSKKYAVQSDWKAHQK 102 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~r 102 (510)
|.|..|++.|.....|+.|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 445555555555555555544
No 59
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=88.76 E-value=0.3 Score=33.62 Aligned_cols=24 Identities=29% Similarity=0.796 Sum_probs=21.8
Q ss_pred cccccccCcccCChHHHHHHHHhc
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGH 28 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H 28 (510)
+|.|++|++.|.....+..|++..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChH
Confidence 689999999999999999998754
No 60
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.59 E-value=0.47 Score=46.49 Aligned_cols=82 Identities=21% Similarity=0.451 Sum_probs=65.4
Q ss_pred ccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHH-h----------CCCceec
Q 010444 43 RKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKT-C----------GTREYKC 111 (510)
Q Consensus 43 ~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rt-h----------geKpykC 111 (510)
..+.|.|++-+| .+.|........|+.+-|+ -.|.+|.+.|....-|..|+.- | |..-|.|
T Consensus 76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C 147 (253)
T KOG4173|consen 76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC 147 (253)
T ss_pred ccccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence 446788998877 7888888888888765554 3799999999999999999864 3 3345999
Q ss_pred C---CCCcccChhHHHHHHHHhcc
Q 010444 112 D---CGTIFSRRDSFITHRAFCDA 132 (510)
Q Consensus 112 ~---Cgk~F~~kssL~~H~r~hh~ 132 (510)
- |+..|.+...-+.|+-..|.
T Consensus 148 lvEgCt~KFkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 148 LVEGCTEKFKTSRDRKDHMIRMHK 171 (253)
T ss_pred HHHhhhhhhhhhhhhhhHHHHhcc
Confidence 5 99999999999999865553
No 61
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=84.40 E-value=0.85 Score=29.85 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=17.6
Q ss_pred ccccccCcccCChHHHHHHHHh
Q 010444 6 FVCEICNKGFQRDQNLQLHRRG 27 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~ 27 (510)
.+|++|++.| ....|.+|++.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5899999999 56779999864
No 62
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=84.20 E-value=0.81 Score=29.96 Aligned_cols=19 Identities=26% Similarity=0.698 Sum_probs=9.8
Q ss_pred ccCcCCccccChhHHHHHHH
Q 010444 83 KCDKCSKKYAVQSDWKAHQK 102 (510)
Q Consensus 83 ~C~~CgK~F~~ks~Lk~H~r 102 (510)
.|+.|++.| ..+.|.+|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 455555555 4445555544
No 63
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=83.45 E-value=0.76 Score=31.56 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=15.3
Q ss_pred ccccCcCCccccChhHHHHHHHH
Q 010444 81 KWKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 81 p~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
+|.|++|++.|.....++.|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 45677777777766666666654
No 64
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=83.18 E-value=0.33 Score=48.50 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=34.8
Q ss_pred eCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHH
Q 010444 48 ICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQK 102 (510)
Q Consensus 48 ~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~r 102 (510)
-|.+| ++.|-+...|.+|.+.. .|+|.+|.|+...---|..|.-
T Consensus 12 wcwyc-------nrefddekiliqhqkak----hfkchichkkl~sgpglsihcm 55 (341)
T KOG2893|consen 12 WCWYC-------NREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIHCM 55 (341)
T ss_pred eeeec-------ccccchhhhhhhhhhhc----cceeeeehhhhccCCCceeehh
Confidence 48887 89999999999887644 4999999998777667766644
No 65
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.81 E-value=0.81 Score=46.15 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=33.0
Q ss_pred cccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccChhHHHHHHH
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSRRDSFITHRA 128 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~kssL~~H~r 128 (510)
|.|.+|+...... .+.+|+..|...-|.|- |++.|.+ .+++.|..
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhccCCeeEEeeccccccc-chhhhhhh
Confidence 6788888776544 56668888655778887 8888888 66777764
No 66
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=81.95 E-value=2.6 Score=44.26 Aligned_cols=85 Identities=19% Similarity=0.362 Sum_probs=60.9
Q ss_pred ccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccC--------------------C--cccccCcCCccccChhHHHHH
Q 010444 43 RKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHG--------------------E--KKWKCDKCSKKYAVQSDWKAH 100 (510)
Q Consensus 43 ~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~g--------------------e--Kp~~C~~CgK~F~~ks~Lk~H 100 (510)
.....+|-.|. ......++.+..|+-..|+ + ..+.|-+|.|.|..+..|+.|
T Consensus 141 t~fslqClFCn------~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeH 214 (423)
T KOG2482|consen 141 TIFSLQCLFCN------NEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEH 214 (423)
T ss_pred CeeeeEEEEec------chhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHH
Confidence 34556788883 4455567777777553331 1 247899999999999999999
Q ss_pred HHH--hCC-----------------------------------------------------Cc--eecC-CCCcccChhH
Q 010444 101 QKT--CGT-----------------------------------------------------RE--YKCD-CGTIFSRRDS 122 (510)
Q Consensus 101 ~rt--hge-----------------------------------------------------Kp--ykC~-Cgk~F~~kss 122 (510)
||. |.. .+ -+|- |...+-....
T Consensus 215 MrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~ 294 (423)
T KOG2482|consen 215 MRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVF 294 (423)
T ss_pred HHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHH
Confidence 984 310 11 3788 9999999999
Q ss_pred HHHHHHHhccc
Q 010444 123 FITHRAFCDAL 133 (510)
Q Consensus 123 L~~H~r~hh~~ 133 (510)
|..|++..|..
T Consensus 295 l~eHmk~vHe~ 305 (423)
T KOG2482|consen 295 LFEHMKIVHEF 305 (423)
T ss_pred HHHHHHHHHHh
Confidence 99999877644
No 67
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.73 E-value=0.63 Score=45.60 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=61.8
Q ss_pred CCcccccc--cCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhcc---
Q 010444 3 TNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKH--- 77 (510)
Q Consensus 3 ekpy~C~~--CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~--- 77 (510)
.+.|.|.+ |-+.|.....+..|..+-+ -..|.+| .+.|.+...|..|+..-|
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h----------------~~sCs~C-------~r~~Pt~hLLd~HI~E~HDs~ 133 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTLH----------------GNSCSFC-------KRAFPTGHLLDAHILEWHDSL 133 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhcc----------------cchhHHH-------HHhCCchhhhhHHHHHHHHHH
Confidence 45688987 8888888777777764432 2479998 899999999999987543
Q ss_pred -------CCcccccCc--CCccccChhHHHHHHHH-h
Q 010444 78 -------GEKKWKCDK--CSKKYAVQSDWKAHQKT-C 104 (510)
Q Consensus 78 -------geKp~~C~~--CgK~F~~ks~Lk~H~rt-h 104 (510)
|..-|.|-+ |..+|+.....+.|+-. |
T Consensus 134 Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 134 FQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred HHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 445699955 99999999999999987 5
No 68
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=79.87 E-value=0.94 Score=50.59 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=27.2
Q ss_pred CCcccccccCcccCChHHHHHHHHhcCCCcccccc
Q 010444 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQR 37 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~ 37 (510)
.+|-+|..||.+|.+.....+|+..|. +|.++.-
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~-dwh~r~n 449 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHD-DWHRRKN 449 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhh-hhhhhhh
Confidence 357799999999999999999999885 4444443
No 69
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=78.72 E-value=0.64 Score=46.53 Aligned_cols=42 Identities=24% Similarity=0.457 Sum_probs=32.8
Q ss_pred cccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhH
Q 010444 7 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKH 72 (510)
Q Consensus 7 ~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H 72 (510)
.|=+|++.|....-|++|++.. .|+|.+| .|.+.+--.|..|
T Consensus 12 wcwycnrefddekiliqhqkak-----------------hfkchic-------hkkl~sgpglsih 53 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAK-----------------HFKCHIC-------HKKLFSGPGLSIH 53 (341)
T ss_pred eeeecccccchhhhhhhhhhhc-----------------cceeeee-------hhhhccCCCceee
Confidence 5889999999999999999754 4899999 5555555556555
No 70
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=77.81 E-value=0.41 Score=50.17 Aligned_cols=22 Identities=9% Similarity=-0.108 Sum_probs=18.4
Q ss_pred CCcccccccCcccCChHHHHHHH
Q 010444 3 TNRFVCEICNKGFQRDQNLQLHR 25 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H~ 25 (510)
-+||+|. |++.+.+++.|+.|-
T Consensus 211 ~~p~k~~-~~~~~~T~~~l~~HS 232 (442)
T KOG4124|consen 211 GTPKKMP-ESLVMDTSSPLSDHS 232 (442)
T ss_pred cCCccCc-ccccccccchhhhcc
Confidence 4688884 899999999998883
No 71
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=76.70 E-value=1.5 Score=43.51 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=23.3
Q ss_pred CCceecC-CCCcccChhHHHHHHHHhccccccchhhhchhhh
Q 010444 106 TREYKCD-CGTIFSRRDSFITHRAFCDALAEENNKVNQGLMD 146 (510)
Q Consensus 106 eKpykC~-Cgk~F~~kssL~~H~r~hh~~~~~~~k~~~~l~~ 146 (510)
+..|.|. |+|.|+-..-.++|+...|....+..+.+..+..
T Consensus 75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~ve~~~~ev~~fn 116 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKGPEFVRKHIFNKHPEKVEEVKKEVEYFN 116 (214)
T ss_dssp SEEEEE-SSS-EESSHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCEECCCCCCcccCChHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 4457777 7777777777777777766655544443333333
No 72
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=75.04 E-value=2 Score=39.57 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=23.5
Q ss_pred ceecC-CCCcccChhHHHHHHHHhccccccchhhhchhhhh
Q 010444 108 EYKCD-CGTIFSRRDSFITHRAFCDALAEENNKVNQGLMDN 147 (510)
Q Consensus 108 pykC~-Cgk~F~~kssL~~H~r~hh~~~~~~~k~~~~l~~~ 147 (510)
-..|- |||.|+. |++|++.||++.++.++....+...
T Consensus 72 ~i~clecGk~~k~---LkrHL~~~~gltp~eYR~kwGlp~d 109 (132)
T PF05443_consen 72 YIICLECGKKFKT---LKRHLRTHHGLTPEEYRAKWGLPKD 109 (132)
T ss_dssp -EE-TBT--EESB---HHHHHHHTT-S-HHHHHHHTT-GGG
T ss_pred eeEEccCCcccch---HHHHHHHccCCCHHHHHHHhCcCCC
Confidence 35565 8888876 6889999999988888887776554
No 73
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=74.24 E-value=5 Score=35.04 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.8
Q ss_pred eec----C-CCCcccChhHHHHHHHHhcc
Q 010444 109 YKC----D-CGTIFSRRDSFITHRAFCDA 132 (510)
Q Consensus 109 ykC----~-Cgk~F~~kssL~~H~r~hh~ 132 (510)
|.| . |++.+.....+++|.+.+|+
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 889 7 99999999999999998774
No 74
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=74.22 E-value=1.9 Score=38.35 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=15.6
Q ss_pred cccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccCh
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSRR 120 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~k 120 (510)
..|+.|+++|.-. ...|..|+ |+..|.-.
T Consensus 10 R~Cp~CG~kFYDL----------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL----------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC----------CCCCccCCCCCCccCcc
Confidence 3566666665433 23555666 66665544
No 75
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=73.93 E-value=1.4 Score=34.58 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=24.7
Q ss_pred CCCcccccccCcccCChHHHHHHHHhcC
Q 010444 2 ATNRFVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 2 gekpy~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
||.-++|+.|+..|.....+.+|....+
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 5777899999999999999999987654
No 76
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.80 E-value=0.82 Score=45.12 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=8.3
Q ss_pred eecC-CCCcccCh
Q 010444 109 YKCD-CGTIFSRR 120 (510)
Q Consensus 109 ykC~-Cgk~F~~k 120 (510)
.+|+ |+..|...
T Consensus 49 ~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPHCGYAAFEE 61 (214)
T ss_pred EECCCCCCccccc
Confidence 5677 88777655
No 77
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=70.25 E-value=3.3 Score=30.14 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=16.9
Q ss_pred CCcccccccCcccCCh----HHHHHHHHh
Q 010444 3 TNRFVCEICNKGFQRD----QNLQLHRRG 27 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~----s~Lk~H~r~ 27 (510)
++..+|.+|++.+... ++|++|++.
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~ 42 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKK 42 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHHH
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence 4567899999999885 789999943
No 78
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=68.48 E-value=2.6 Score=33.23 Aligned_cols=25 Identities=36% Similarity=0.848 Sum_probs=12.1
Q ss_pred CCCceecC-CCCcccChhHHHHHHHH
Q 010444 105 GTREYKCD-CGTIFSRRDSFITHRAF 129 (510)
Q Consensus 105 geKpykC~-Cgk~F~~kssL~~H~r~ 129 (510)
||.-++|+ |+..|.+..++.+|+..
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhH
Confidence 34444555 55555555555555443
No 79
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=66.72 E-value=2.2 Score=42.26 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCcccccCcCCccccChhHHHHHHHH-hCC
Q 010444 78 GEKKWKCDKCSKKYAVQSDWKAHQKT-CGT 106 (510)
Q Consensus 78 geKp~~C~~CgK~F~~ks~Lk~H~rt-hge 106 (510)
.+.+|.|..|+|.|+-...++.|+.. |.+
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence 46689999999999999999999998 755
No 80
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=63.53 E-value=4.4 Score=37.01 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=16.2
Q ss_pred cccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccCh
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSRR 120 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~k 120 (510)
..|+.|+++|.-. ...|..|+ |+..|...
T Consensus 10 r~Cp~cg~kFYDL----------nk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDL----------NRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCcccccc----------CCCCccCCCcCCccCcc
Confidence 4566666666432 23566666 66665544
No 81
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.50 E-value=2.3 Score=41.96 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=29.7
Q ss_pred cceeeCCCCCCCCCCCCCccCChhHHHhHhhhc---c-------CCc-----ccccCcCCccccCh
Q 010444 44 KRVYICPEPSCVHHNPARALGDLTGIKKHFSRK---H-------GEK-----KWKCDKCSKKYAVQ 94 (510)
Q Consensus 44 ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H---~-------geK-----p~~C~~CgK~F~~k 94 (510)
++.++||+| ++.|..+.......+.- . +.. .+.|+.|+.+|...
T Consensus 3 ~k~~~CPvC-------~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVC-------GKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCC-------CCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 467899999 88888766555554431 1 122 36799999987654
No 82
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=59.26 E-value=6.4 Score=27.32 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=7.0
Q ss_pred cccccCcCCc
Q 010444 80 KKWKCDKCSK 89 (510)
Q Consensus 80 Kp~~C~~CgK 89 (510)
.+|+|++|+.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 5677777764
No 83
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=57.11 E-value=5.2 Score=35.53 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=24.7
Q ss_pred eeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChh
Q 010444 46 VYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQS 95 (510)
Q Consensus 46 py~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks 95 (510)
...|+.| +++|... +..|..|++|+..|....
T Consensus 9 KR~Cp~C-------G~kFYDL-----------nk~PivCP~CG~~~~~~~ 40 (108)
T PF09538_consen 9 KRTCPSC-------GAKFYDL-----------NKDPIVCPKCGTEFPPEP 40 (108)
T ss_pred cccCCCC-------cchhccC-----------CCCCccCCCCCCccCccc
Confidence 4589998 7888542 236889999999998773
No 84
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=56.93 E-value=8.4 Score=27.98 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=12.7
Q ss_pred CCcccccCcCCccccCh----hHHHHHHH
Q 010444 78 GEKKWKCDKCSKKYAVQ----SDWKAHQK 102 (510)
Q Consensus 78 geKp~~C~~CgK~F~~k----s~Lk~H~r 102 (510)
.++..+|.+|++.+... +.|++|++
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 34556677777766653 56666664
No 85
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.30 E-value=18 Score=32.48 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=49.6
Q ss_pred CCcccccccCcccCChHHHHHHHHhcC-CCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcc
Q 010444 3 TNRFVCEICNKGFQRDQNLQLHRRGHN-LPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKK 81 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H~r~H~-~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp 81 (510)
+-|-+|++|+-..-....|.+- .|+ .|.+.-.+.......+...|--| .+.|.......+- .-.....
T Consensus 13 ~LP~~CpiCgLtLVss~HLARS--yHHLfPl~~f~ev~~~~~~~~~~C~~C-------~~~f~~~~~~~~~--~~~~~~~ 81 (112)
T TIGR00622 13 ELPVECPICGLTLILSTHLARS--YHHLFPLKAFQEIPLEEYNGSRFCFGC-------QGPFPKPPVSPFD--ELKDSHR 81 (112)
T ss_pred CCCCcCCcCCCEEeccchHHHh--hhccCCCcccccccccccCCCCcccCc-------CCCCCCccccccc--ccccccc
Confidence 3477899999888888888754 343 12211111111111122346666 6666543211100 0122346
Q ss_pred cccCcCCccccChhHHHHHHHHh
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTC 104 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rth 104 (510)
|+|+.|.+.|-..-+.-.|...|
T Consensus 82 y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 82 YVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred eeCCCCCCccccccchhhhhhcc
Confidence 88999988888888887775443
No 86
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=56.11 E-value=7.5 Score=29.29 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=19.4
Q ss_pred ccccccCcccCCh-----HHHHHHHH-hc
Q 010444 6 FVCEICNKGFQRD-----QNLQLHRR-GH 28 (510)
Q Consensus 6 y~C~~CgK~F~~~-----s~Lk~H~r-~H 28 (510)
-.|.+|++.+... ++|.+|++ .|
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 4699999999877 58999998 45
No 87
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=55.41 E-value=6.1 Score=42.56 Aligned_cols=121 Identities=14% Similarity=0.275 Sum_probs=69.8
Q ss_pred Ccccc--cccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCC--
Q 010444 4 NRFVC--EICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGE-- 79 (510)
Q Consensus 4 kpy~C--~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~ge-- 79 (510)
+-|.| +.|...+-.+....+|...|-+....-+ ...+.-...|.|..-.| ++ +.+....|..-|+..
T Consensus 270 Ehyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~-dgf~rfs~syhC~~~~C-----~k---sTsdV~~h~nFht~~~n 340 (480)
T KOG4377|consen 270 EHYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLI-DGFHRFSNSYHCTGQIC-----EK---STSDVLLHDNFHTDKRN 340 (480)
T ss_pred hhhcccCccccccccchhhhHHHHHHHhhcccccc-cchhhcCccchhhhccc-----Cc---ccccccccCcccccccc
Confidence 34677 5698888889999999998852211100 01111233467766555 66 334455566555421
Q ss_pred -----cccccCcCC--ccccChhHHHHHHHHh-----CC--------------------CceecC---CCCcccChhHHH
Q 010444 80 -----KKWKCDKCS--KKYAVQSDWKAHQKTC-----GT--------------------REYKCD---CGTIFSRRDSFI 124 (510)
Q Consensus 80 -----Kp~~C~~Cg--K~F~~ks~Lk~H~rth-----ge--------------------KpykC~---Cgk~F~~kssL~ 124 (510)
.-|.|..|+ ..|+...+-.-|.+-+ |- .-|.|+ |+.+|...+.+.
T Consensus 341 ~GfrrthfhC~r~gCTdtfK~~khk~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm~ 420 (480)
T KOG4377|consen 341 NGFRRTHFHCQRIGCTDTFKDSKHKPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQMA 420 (480)
T ss_pred CceecceeEEeccCCccccccccccccccCcchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhhhh
Confidence 236787766 5555433333333321 10 115565 899999989999
Q ss_pred HHHHHhccc
Q 010444 125 THRAFCDAL 133 (510)
Q Consensus 125 ~H~r~hh~~ 133 (510)
.|.|.|...
T Consensus 421 shkrkheRq 429 (480)
T KOG4377|consen 421 SHKRKHERQ 429 (480)
T ss_pred hhhhhhhhh
Confidence 998887543
No 88
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=54.82 E-value=17 Score=38.86 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=47.9
Q ss_pred cccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCccccc
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKC 84 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C 84 (510)
|-.|-.|++.|.....-..||..+|.. -..++ ..+.+...|...+.... ..-+.|
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~Hgf---------fIPdr---------------eYL~D~~GLl~YLgeKV-~~~~~C 220 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGF---------FIPDR---------------EYLTDEKGLLKYLGEKV-GIGFIC 220 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCC---------cCCch---------------HhhhchhHHHHHHHHHh-ccCceE
Confidence 456778888888888888888777511 01111 22233344444444332 245789
Q ss_pred CcCC---ccccChhHHHHHHHH
Q 010444 85 DKCS---KKYAVQSDWKAHQKT 103 (510)
Q Consensus 85 ~~Cg---K~F~~ks~Lk~H~rt 103 (510)
-+|. +.|......+.||..
T Consensus 221 L~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 221 LFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred EEeccccCcccccHHHHHHHhh
Confidence 9998 999999999999987
No 89
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=53.90 E-value=2.7 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.773 Sum_probs=20.0
Q ss_pred CCcccccc--cCcccCChHHHHHHHH
Q 010444 3 TNRFVCEI--CNKGFQRDQNLQLHRR 26 (510)
Q Consensus 3 ekpy~C~~--CgK~F~~~s~Lk~H~r 26 (510)
.|+|+|.+ |.|.++....|+.|..
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~ 372 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKL 372 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccc
Confidence 58999975 9999999888888764
No 90
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=53.48 E-value=2.8 Score=39.50 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=12.7
Q ss_pred ccccCcCCccccChhHH
Q 010444 81 KWKCDKCSKKYAVQSDW 97 (510)
Q Consensus 81 p~~C~~CgK~F~~ks~L 97 (510)
.++|+.|+++|.....+
T Consensus 28 ~~~c~~c~~~f~~~e~~ 44 (154)
T PRK00464 28 RRECLACGKRFTTFERV 44 (154)
T ss_pred eeeccccCCcceEeEec
Confidence 47888888888776554
No 91
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=51.44 E-value=8.3 Score=27.08 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=5.7
Q ss_pred cccccCcCCc
Q 010444 80 KKWKCDKCSK 89 (510)
Q Consensus 80 Kp~~C~~CgK 89 (510)
.|.+|++|+.
T Consensus 17 ~p~~CP~Cg~ 26 (34)
T cd00729 17 APEKCPICGA 26 (34)
T ss_pred CCCcCcCCCC
Confidence 3556666654
No 92
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=50.12 E-value=33 Score=29.87 Aligned_cols=24 Identities=17% Similarity=0.511 Sum_probs=20.5
Q ss_pred ccc----CcCCccccChhHHHHHHHH-hC
Q 010444 82 WKC----DKCSKKYAVQSDWKAHQKT-CG 105 (510)
Q Consensus 82 ~~C----~~CgK~F~~ks~Lk~H~rt-hg 105 (510)
|.| ..|++.+.....+++|.+. |+
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 788 8899999999999999887 53
No 93
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=49.50 E-value=5.5 Score=37.54 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=11.4
Q ss_pred ceecC-CCCcccChhH
Q 010444 108 EYKCD-CGTIFSRRDS 122 (510)
Q Consensus 108 pykC~-Cgk~F~~kss 122 (510)
.|.|+ |+++|.....
T Consensus 28 ~~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 28 RRECLACGKRFTTFER 43 (154)
T ss_pred eeeccccCCcceEeEe
Confidence 48888 8888887654
No 94
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=49.26 E-value=11 Score=36.02 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=9.2
Q ss_pred ccCCcccccCcCC
Q 010444 76 KHGEKKWKCDKCS 88 (510)
Q Consensus 76 H~geKp~~C~~Cg 88 (510)
|-++-|.+|++|+
T Consensus 144 ~~ge~P~~CPiCg 156 (166)
T COG1592 144 HEGEAPEVCPICG 156 (166)
T ss_pred ccCCCCCcCCCCC
Confidence 3456778888887
No 95
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=48.55 E-value=9.9 Score=36.35 Aligned_cols=23 Identities=35% Similarity=0.879 Sum_probs=18.8
Q ss_pred cccccCcCCccccChhHHHHHHHHhCCCceecC-CC
Q 010444 80 KKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CG 114 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cg 114 (510)
+.|.|++||..+. ++-|-+|+ |+
T Consensus 133 ~~~vC~vCGy~~~------------ge~P~~CPiCg 156 (166)
T COG1592 133 KVWVCPVCGYTHE------------GEAPEVCPICG 156 (166)
T ss_pred CEEEcCCCCCccc------------CCCCCcCCCCC
Confidence 3699999987644 57899999 98
No 96
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.19 E-value=10 Score=34.70 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=25.9
Q ss_pred eeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHH
Q 010444 46 VYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWK 98 (510)
Q Consensus 46 py~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk 98 (510)
...|+.| +++|... +..|..|++|+..|.....++
T Consensus 9 Kr~Cp~c-------g~kFYDL-----------nk~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 9 KRICPNT-------GSKFYDL-----------NRRPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred cccCCCc-------Ccccccc-----------CCCCccCCCcCCccCcchhhc
Confidence 4589998 7888542 247899999999987664443
No 97
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=46.51 E-value=15 Score=35.31 Aligned_cols=33 Identities=15% Similarity=0.666 Sum_probs=25.5
Q ss_pred CcccccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccC
Q 010444 79 EKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSR 119 (510)
Q Consensus 79 eKp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~ 119 (510)
..-|.|+.|+++|+....+. .-|.|+ |+.....
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~~--------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAME--------YGFRCPQCGEMLEE 148 (178)
T ss_pred CCEEECCCCCcEEeHHHHhh--------cCCcCCCCCCCCee
Confidence 45689999999999888763 469999 9866544
No 98
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=46.51 E-value=20 Score=33.24 Aligned_cols=38 Identities=21% Similarity=0.532 Sum_probs=23.8
Q ss_pred CcccccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccC
Q 010444 79 EKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSR 119 (510)
Q Consensus 79 eKp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~ 119 (510)
..-|.|+.|+++|.....+.. ......|.|+ |+.....
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~---~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQL---LDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHh---cCCCCcEECCCCCCEEEE
Confidence 346889999888886554432 0123338898 8876543
No 99
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=46.21 E-value=9.7 Score=35.19 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=25.3
Q ss_pred eecC-CCCcccChhHHHHHHHHhccccccchhhhchhh
Q 010444 109 YKCD-CGTIFSRRDSFITHRAFCDALAEENNKVNQGLM 145 (510)
Q Consensus 109 ykC~-Cgk~F~~kssL~~H~r~hh~~~~~~~k~~~~l~ 145 (510)
..|- |||.|+ +|++|+.+|++..++.++....+.
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmTPd~YR~KW~LP 111 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLTPDEYRAKWGLP 111 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCCHHHHHHhcCCC
Confidence 5576 788776 478888888888888887765543
No 100
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=45.88 E-value=18 Score=34.02 Aligned_cols=33 Identities=12% Similarity=0.555 Sum_probs=24.4
Q ss_pred CCcccccCcCCccccChhHHHHHHHHhCCCceecC-CCCccc
Q 010444 78 GEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFS 118 (510)
Q Consensus 78 geKp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~ 118 (510)
...-|.|+.|+++|+....+. .-|.|+ |+....
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~--------~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME--------LNFTCPRCGAMLD 139 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH--------cCCcCCCCCCEee
Confidence 345688988988888888874 368888 886543
No 101
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=45.71 E-value=18 Score=39.34 Aligned_cols=36 Identities=28% Similarity=0.666 Sum_probs=25.6
Q ss_pred CCcccccCcCCccccChhHHHHHHHHhCCCceecC-CCC
Q 010444 78 GEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGT 115 (510)
Q Consensus 78 geKp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk 115 (510)
...-|.|+.|.++|.....++-- .-..-.|.|. |+-
T Consensus 125 ~~~~Y~Cp~C~kkyt~Lea~~L~--~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 125 NVAGYVCPNCQKKYTSLEALQLL--DNETGEFHCENCGG 161 (436)
T ss_pred ccccccCCccccchhhhHHHHhh--cccCceEEEecCCC
Confidence 34569999999999988876421 1234568998 863
No 102
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=44.83 E-value=12 Score=32.11 Aligned_cols=14 Identities=50% Similarity=1.130 Sum_probs=9.3
Q ss_pred cccccCcCCccccC
Q 010444 80 KKWKCDKCSKKYAV 93 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ 93 (510)
.-|.|..|++.|+-
T Consensus 52 GIW~C~kCg~~fAG 65 (89)
T COG1997 52 GIWKCRKCGAKFAG 65 (89)
T ss_pred CeEEcCCCCCeecc
Confidence 35777777777653
No 103
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=44.06 E-value=71 Score=33.61 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=22.1
Q ss_pred CCCceecC----CCCcccChhHHHHHHHHhc
Q 010444 105 GTREYKCD----CGTIFSRRDSFITHRAFCD 131 (510)
Q Consensus 105 geKpykC~----Cgk~F~~kssL~~H~r~hh 131 (510)
-+-.|.|. |.++|....+|..|+..-|
T Consensus 141 ~g~iFmC~~~~GC~RTyLsqrDlqAHInhrH 171 (389)
T KOG2932|consen 141 MGGIFMCAAPHGCLRTYLSQRDLQAHINHRH 171 (389)
T ss_pred ccceEEeecchhHHHHHhhHHHHHHHhhhhh
Confidence 45679995 9999999999999986544
No 104
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=43.93 E-value=7.8 Score=40.93 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=26.3
Q ss_pred CcccccCcCCccccChhHHHHHHHH-hCCCceec
Q 010444 79 EKKWKCDKCSKKYAVQSDWKAHQKT-CGTREYKC 111 (510)
Q Consensus 79 eKp~~C~~CgK~F~~ks~Lk~H~rt-hgeKpykC 111 (510)
+.-|.|++|++.-.....|..|+.. |.+-++.|
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~ 110 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSV 110 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcccCcce
Confidence 4579999999998888899999888 86655443
No 105
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=43.55 E-value=13 Score=31.85 Aligned_cols=32 Identities=31% Similarity=0.730 Sum_probs=23.0
Q ss_pred cccccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccCh
Q 010444 80 KKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSRR 120 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~k 120 (510)
.+|.|+.|++. ..+ | -...-++|. |+..|.--
T Consensus 34 ~~~~Cp~C~~~-~Vk-------R-~a~GIW~C~kCg~~fAGg 66 (89)
T COG1997 34 AKHVCPFCGRT-TVK-------R-IATGIWKCRKCGAKFAGG 66 (89)
T ss_pred cCCcCCCCCCc-cee-------e-eccCeEEcCCCCCeeccc
Confidence 57899999987 221 1 245679999 99998754
No 106
>PF14353 CpXC: CpXC protein
Probab=42.23 E-value=24 Score=31.57 Aligned_cols=16 Identities=25% Similarity=0.814 Sum_probs=7.5
Q ss_pred eecC-CCCcccChhHHH
Q 010444 109 YKCD-CGTIFSRRDSFI 124 (510)
Q Consensus 109 ykC~-Cgk~F~~kssL~ 124 (510)
|.|+ |++.|.-...+.
T Consensus 39 ~~CP~Cg~~~~~~~p~l 55 (128)
T PF14353_consen 39 FTCPSCGHKFRLEYPLL 55 (128)
T ss_pred EECCCCCCceecCCCEE
Confidence 5555 555554443333
No 107
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=40.41 E-value=15 Score=35.43 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=28.0
Q ss_pred ccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCcccc
Q 010444 39 TTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYA 92 (510)
Q Consensus 39 ~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~ 92 (510)
.......-|.|+.| +++|+....+. .-|.|+.|+....
T Consensus 110 ~~e~~~~~Y~Cp~C-------~~rytf~eA~~---------~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 110 EEEENNMFFFCPNC-------HIRFTFDEAME---------YGFRCPQCGEMLE 147 (178)
T ss_pred hhccCCCEEECCCC-------CcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence 33445678999998 78887776653 3699999998654
No 108
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=39.77 E-value=22 Score=25.28 Aligned_cols=12 Identities=33% Similarity=0.996 Sum_probs=6.5
Q ss_pred cccccCcCCccc
Q 010444 80 KKWKCDKCSKKY 91 (510)
Q Consensus 80 Kp~~C~~CgK~F 91 (510)
+..+|..|+..|
T Consensus 24 ~~vrC~~C~~~f 35 (37)
T PF13719_consen 24 RKVRCPKCGHVF 35 (37)
T ss_pred cEEECCCCCcEe
Confidence 345566555554
No 109
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=39.54 E-value=18 Score=33.40 Aligned_cols=42 Identities=17% Similarity=0.434 Sum_probs=28.2
Q ss_pred cccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCcccc
Q 010444 40 TEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYA 92 (510)
Q Consensus 40 ~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~ 92 (510)
.......|.||.| ++.|.....+.. . +. +..|.|+.|+....
T Consensus 93 ~e~~~~~Y~Cp~C-------~~~y~~~ea~~~-~--d~-~~~f~Cp~Cg~~l~ 134 (147)
T smart00531 93 DETNNAYYKCPNC-------QSKYTFLEANQL-L--DM-DGTFTCPRCGEELE 134 (147)
T ss_pred cccCCcEEECcCC-------CCEeeHHHHHHh-c--CC-CCcEECCCCCCEEE
Confidence 3445678999998 788875544332 1 11 34599999998754
No 110
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=39.06 E-value=16 Score=34.30 Aligned_cols=38 Identities=16% Similarity=0.427 Sum_probs=28.7
Q ss_pred ccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCcccc
Q 010444 39 TTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYA 92 (510)
Q Consensus 39 ~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~ 92 (510)
..+....-|.|+.| ..+|+....+. .-|.|+.|+....
T Consensus 102 ~~e~~~~~Y~Cp~c-------~~r~tf~eA~~---------~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 102 EFETNNMFFICPNM-------CVRFTFNEAME---------LNFTCPRCGAMLD 139 (158)
T ss_pred hhccCCCeEECCCC-------CcEeeHHHHHH---------cCCcCCCCCCEee
Confidence 33446688999998 78888777764 3699999998643
No 111
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.79 E-value=2.1e+02 Score=32.44 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=36.0
Q ss_pred hHHHHHHHH-h---CCCceecC---CCCcccChhHHHHHHHHhccccccchhhhchh
Q 010444 95 SDWKAHQKT-C---GTREYKCD---CGTIFSRRDSFITHRAFCDALAEENNKVNQGL 144 (510)
Q Consensus 95 s~Lk~H~rt-h---geKpykC~---Cgk~F~~kssL~~H~r~hh~~~~~~~k~~~~l 144 (510)
..+..|++. . .+-.|.|. |.|.|.-..-.++|+...|....+..+....+
T Consensus 492 ~eve~~v~s~t~e~~kdKy~C~lsgc~KlF~gpEFvrKHi~~KH~d~leeirkea~f 548 (648)
T KOG2295|consen 492 DEVENFVDSNTMELDKDKYLCPLSGCAKLFKGPEFVRKHINKKHKDKLEEIRKEAIF 548 (648)
T ss_pred HHHHHHHHHHHHHhhcccccCCCcchHhhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556654 2 45679998 99999999999999988877666555544433
No 112
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.52 E-value=19 Score=36.62 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=38.1
Q ss_pred eeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHH
Q 010444 46 VYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 46 py~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
-|.|..| +.... +..+.+|+.+-++ ..|.|--|++.|.+ ..++.|..-
T Consensus 3 ~FtCnvC-------gEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kC 50 (276)
T KOG2186|consen 3 FFTCNVC-------GESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKC 50 (276)
T ss_pred EEehhhh-------hhhcc-ccchHHHHHhccC-CeeEEeeccccccc-chhhhhhhh
Confidence 4889998 54443 4457779888877 78999999999999 778889875
No 113
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=38.47 E-value=7.3 Score=35.91 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=6.2
Q ss_pred cceeeCCCC
Q 010444 44 KRVYICPEP 52 (510)
Q Consensus 44 ekpy~C~~C 52 (510)
.+.|+|.+|
T Consensus 78 ~~lYeCnIC 86 (140)
T PF05290_consen 78 PKLYECNIC 86 (140)
T ss_pred CCceeccCc
Confidence 366777776
No 114
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=38.13 E-value=18 Score=27.68 Aligned_cols=16 Identities=25% Similarity=0.673 Sum_probs=7.5
Q ss_pred HHHHHHHH-hCCCceec
Q 010444 96 DWKAHQKT-CGTREYKC 111 (510)
Q Consensus 96 ~Lk~H~rt-hgeKpykC 111 (510)
.|..|... +..++..|
T Consensus 25 ~l~~H~~~~C~~~~v~C 41 (60)
T PF02176_consen 25 ELDDHLENECPKRPVPC 41 (60)
T ss_dssp CHHHHHHTTSTTSEEE-
T ss_pred HHHHHHHccCCCCcEEC
Confidence 45555553 44445455
No 115
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=38.10 E-value=18 Score=33.29 Aligned_cols=23 Identities=35% Similarity=0.735 Sum_probs=16.1
Q ss_pred CcccccccCcccCChHHHHHHHHhcC
Q 010444 4 NRFVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 4 kpy~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
.-..|-+|||.|+. |++|++.|+
T Consensus 71 d~i~clecGk~~k~---LkrHL~~~~ 93 (132)
T PF05443_consen 71 DYIICLECGKKFKT---LKRHLRTHH 93 (132)
T ss_dssp S-EE-TBT--EESB---HHHHHHHTT
T ss_pred CeeEEccCCcccch---HHHHHHHcc
Confidence 34579999999985 699999996
No 116
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=38.10 E-value=8 Score=44.42 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=23.8
Q ss_pred CcccccccCcccCChHHHHHHHHhcC
Q 010444 4 NRFVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 4 kpy~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
--|.|.+|+|.|-....+..||++|.
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 35899999999999999999999995
No 117
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=38.03 E-value=15 Score=27.25 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=6.7
Q ss_pred ccccCcCCccc
Q 010444 81 KWKCDKCSKKY 91 (510)
Q Consensus 81 p~~C~~CgK~F 91 (510)
.++|++|+..+
T Consensus 21 ~~~Cp~CG~~~ 31 (46)
T PRK00398 21 GVRCPYCGYRI 31 (46)
T ss_pred ceECCCCCCeE
Confidence 46666666544
No 118
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=38.00 E-value=23 Score=24.90 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=6.8
Q ss_pred ccccCcCCcccc
Q 010444 81 KWKCDKCSKKYA 92 (510)
Q Consensus 81 p~~C~~CgK~F~ 92 (510)
..+|+.|+..|.
T Consensus 25 ~v~C~~C~~~~~ 36 (38)
T TIGR02098 25 KVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEE
Confidence 355666665553
No 119
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.94 E-value=18 Score=37.88 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=7.1
Q ss_pred ccceeeCCCCC
Q 010444 43 RKRVYICPEPS 53 (510)
Q Consensus 43 ~ekpy~C~~C~ 53 (510)
+.|...|..|.
T Consensus 207 G~RyL~CslC~ 217 (305)
T TIGR01562 207 GLRYLSCSLCA 217 (305)
T ss_pred CceEEEcCCCC
Confidence 55666777763
No 120
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=35.54 E-value=35 Score=34.73 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=34.2
Q ss_pred ccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccCh
Q 010444 43 RKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSRR 120 (510)
Q Consensus 43 ~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~k 120 (510)
..+-|.|..| .... . .++-...+.-+|..|.++|.--..=+ --|.-.|.|. |+..|+-.
T Consensus 109 ~drqFaC~~C-------d~~W------w--Rrvp~rKeVSRCr~C~~rYDPVP~dk----mwG~aef~C~~C~h~F~G~ 168 (278)
T PF15135_consen 109 VDRQFACSSC-------DHMW------W--RRVPQRKEVSRCRKCRKRYDPVPCDK----MWGIAEFHCPKCRHNFRGF 168 (278)
T ss_pred cceeeecccc-------chHH------H--hccCcccccccccccccccCCCcccc----ccceeeeecccccccchhh
Confidence 3478999998 2111 1 12223334467888888875443211 1245568898 98888753
No 121
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=34.91 E-value=15 Score=38.49 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=7.2
Q ss_pred ccceeeCCCCC
Q 010444 43 RKRVYICPEPS 53 (510)
Q Consensus 43 ~ekpy~C~~C~ 53 (510)
+.|...|..|.
T Consensus 209 G~RyL~CslC~ 219 (309)
T PRK03564 209 GLRYLHCNLCE 219 (309)
T ss_pred CceEEEcCCCC
Confidence 56667777763
No 122
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.71 E-value=36 Score=30.53 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=48.6
Q ss_pred cceeeCCCCCCCCCCCCCccCChhHHHhHhhhc-----cCCccc-------ccCcCCccccChhHHHHHHHHhCCCceec
Q 010444 44 KRVYICPEPSCVHHNPARALGDLTGIKKHFSRK-----HGEKKW-------KCDKCSKKYAVQSDWKAHQKTCGTREYKC 111 (510)
Q Consensus 44 ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H-----~geKp~-------~C~~CgK~F~~ks~Lk~H~rthgeKpykC 111 (510)
+-|-.|++| +-..-....|.|.+.-- -.|.+| .|--|.+.|........- .......|.|
T Consensus 13 ~LP~~CpiC-------gLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~-~~~~~~~y~C 84 (112)
T TIGR00622 13 ELPVECPIC-------GLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFD-ELKDSHRYVC 84 (112)
T ss_pred CCCCcCCcC-------CCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccccc-ccccccceeC
Confidence 456788888 66666666665542210 011222 388899998765321100 0123457999
Q ss_pred C-CCCcccChhHHHHHHHHhc
Q 010444 112 D-CGTIFSRRDSFITHRAFCD 131 (510)
Q Consensus 112 ~-Cgk~F~~kssL~~H~r~hh 131 (510)
+ |...|-..-+.-.|...|.
T Consensus 85 ~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 85 AVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred CCCCCccccccchhhhhhccC
Confidence 9 9999998888888877664
No 123
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=34.26 E-value=34 Score=24.26 Aligned_cols=11 Identities=36% Similarity=1.041 Sum_probs=5.6
Q ss_pred ccccCcCCccc
Q 010444 81 KWKCDKCSKKY 91 (510)
Q Consensus 81 p~~C~~CgK~F 91 (510)
..+|..|+..|
T Consensus 25 ~v~C~~C~~~f 35 (36)
T PF13717_consen 25 KVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEe
Confidence 44555555544
No 124
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=33.38 E-value=12 Score=38.06 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=12.9
Q ss_pred CCCceecC-CCCcccChhHHH
Q 010444 105 GTREYKCD-CGTIFSRRDSFI 124 (510)
Q Consensus 105 geKpykC~-Cgk~F~~kssL~ 124 (510)
..+++.|+ |+.-......|.
T Consensus 206 k~k~~PCPKCg~et~eTkdLS 226 (314)
T PF06524_consen 206 KGKPIPCPKCGYETQETKDLS 226 (314)
T ss_pred cCCCCCCCCCCCcccccccce
Confidence 45788898 986655444443
No 125
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=33.22 E-value=57 Score=34.50 Aligned_cols=53 Identities=17% Similarity=0.494 Sum_probs=35.2
Q ss_pred CcccccCcCCccccChhHHHHHHHH-----------------------h-----CCCceecC-CCCcccChhHHHHHHHH
Q 010444 79 EKKWKCDKCSKKYAVQSDWKAHQKT-----------------------C-----GTREYKCD-CGTIFSRRDSFITHRAF 129 (510)
Q Consensus 79 eKp~~C~~CgK~F~~ks~Lk~H~rt-----------------------h-----geKpykC~-Cgk~F~~kssL~~H~r~ 129 (510)
.-|.+|++|+-......+|.+-.+. + ..-.|.|. |...|-..-+.-.|...
T Consensus 288 sLP~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesL 367 (378)
T KOG2807|consen 288 SLPIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESL 367 (378)
T ss_pred cCCccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhh
Confidence 3577888888888777777664431 0 01237777 88888777777777766
Q ss_pred hc
Q 010444 130 CD 131 (510)
Q Consensus 130 hh 131 (510)
|.
T Consensus 368 h~ 369 (378)
T KOG2807|consen 368 HN 369 (378)
T ss_pred hc
Confidence 53
No 126
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=33.21 E-value=15 Score=30.42 Aligned_cols=38 Identities=16% Similarity=0.428 Sum_probs=19.0
Q ss_pred cccCcCCccccChhHHHHHHHHhCCCceecC---CCCcccCh
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTCGTREYKCD---CGTIFSRR 120 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~---Cgk~F~~k 120 (510)
+.|+.|+........-..+.. ..++-+.|. |+.+|...
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~ 42 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITY 42 (72)
T ss_pred ccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEE
Confidence 356666655432222111111 234556774 88888765
No 127
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=32.73 E-value=18 Score=31.21 Aligned_cols=14 Identities=36% Similarity=0.892 Sum_probs=9.3
Q ss_pred cccccCcCCccccC
Q 010444 80 KKWKCDKCSKKYAV 93 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ 93 (510)
-.|.|..|++.|+-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PTZ00255 53 GIWRCKGCKKTVAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 45777777776653
No 128
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.64 E-value=27 Score=31.30 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=5.9
Q ss_pred cccccCcCCccc
Q 010444 80 KKWKCDKCSKKY 91 (510)
Q Consensus 80 Kp~~C~~CgK~F 91 (510)
.|..|++|+|.|
T Consensus 25 dPiVsPytG~s~ 36 (129)
T COG4530 25 DPIVSPYTGKSY 36 (129)
T ss_pred CccccCcccccc
Confidence 344455555544
No 129
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.55 E-value=22 Score=31.78 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=22.7
Q ss_pred cccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccCh
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSRR 120 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~k 120 (510)
-.|+.|+|+|... ...|..|+ |++.|.+.
T Consensus 10 ridPetg~KFYDL----------NrdPiVsPytG~s~P~s 39 (129)
T COG4530 10 RIDPETGKKFYDL----------NRDPIVSPYTGKSYPRS 39 (129)
T ss_pred ccCccccchhhcc----------CCCccccCcccccchHH
Confidence 4799999998643 35899999 99999543
No 130
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=32.19 E-value=36 Score=22.45 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=16.2
Q ss_pred ccccccCcccCChHHHHHHHH
Q 010444 6 FVCEICNKGFQRDQNLQLHRR 26 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r 26 (510)
..|++|.+.+ ....+..|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 4699999999 5567888875
No 131
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=31.54 E-value=17 Score=31.41 Aligned_cols=13 Identities=46% Similarity=1.221 Sum_probs=8.8
Q ss_pred cccccCcCCcccc
Q 010444 80 KKWKCDKCSKKYA 92 (510)
Q Consensus 80 Kp~~C~~CgK~F~ 92 (510)
-.|+|..|++.|+
T Consensus 52 GIW~C~~C~~~~A 64 (91)
T TIGR00280 52 GIWTCRKCGAKFA 64 (91)
T ss_pred EEEEcCCCCCEEe
Confidence 3577777777664
No 132
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=31.27 E-value=32 Score=36.05 Aligned_cols=25 Identities=16% Similarity=0.533 Sum_probs=16.4
Q ss_pred cccccCcCCccccChhHHHHHHHHh
Q 010444 80 KKWKCDKCSKKYAVQSDWKAHQKTC 104 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ks~Lk~H~rth 104 (510)
-.|.|+.|...|..-.+.-.|...|
T Consensus 387 ~rY~Ce~CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 387 GRYQCELCKSTFCSDCDVFIHETLH 411 (421)
T ss_pred cceechhhhhhhhhhhHHHHHHHHh
Confidence 3577777777777776666665443
No 133
>PRK14873 primosome assembly protein PriA; Provisional
Probab=30.32 E-value=26 Score=40.47 Aligned_cols=26 Identities=19% Similarity=0.684 Sum_probs=17.2
Q ss_pred ccCCcccccCcCCccccChhHHHHHHHHhCCCceecC-CCCc
Q 010444 76 KHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTI 116 (510)
Q Consensus 76 H~geKp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~ 116 (510)
|...+..+|.+|++. ..|+.|+ |+..
T Consensus 405 h~~~~~l~Ch~CG~~---------------~~p~~Cp~Cgs~ 431 (665)
T PRK14873 405 PSAGGTPRCRWCGRA---------------APDWRCPRCGSD 431 (665)
T ss_pred ecCCCeeECCCCcCC---------------CcCccCCCCcCC
Confidence 334556788888753 2367898 9854
No 134
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=30.17 E-value=16 Score=42.48 Aligned_cols=66 Identities=23% Similarity=0.425 Sum_probs=0.0
Q ss_pred eCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccChhH----------HHHHHHHhCCCce-ecC-CCC
Q 010444 48 ICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSD----------WKAHQKTCGTREY-KCD-CGT 115 (510)
Q Consensus 48 ~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~ks~----------Lk~H~rthgeKpy-kC~-Cgk 115 (510)
.|..| .+.|... .+....|++.|..||+.|..... |...-..-...++ .|+ |
T Consensus 462 tC~~C-------~kkFfSl-------sK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~C-- 525 (1374)
T PTZ00303 462 SCPSC-------GRAFISL-------SRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTC-- 525 (1374)
T ss_pred cccCc-------CCccccc-------ccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHH--
Q ss_pred cccChhHHHHHHHHh
Q 010444 116 IFSRRDSFITHRAFC 130 (510)
Q Consensus 116 ~F~~kssL~~H~r~h 130 (510)
|.....+..|.-.|
T Consensus 526 -Ydq~EnLlQm~LLc 539 (1374)
T PTZ00303 526 -YKEYETVSQLHYLG 539 (1374)
T ss_pred -HHHHHhHHhhHHHH
No 135
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=29.52 E-value=14 Score=28.62 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=16.8
Q ss_pred CcccccccCcccCChHHHHHHHHhcC
Q 010444 4 NRFVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 4 kpy~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
.+|+|+.|.+.|--.=.+-.|...|.
T Consensus 20 ~~y~C~~C~~~FC~dCD~fiHE~LH~ 45 (51)
T PF07975_consen 20 SRYRCPKCKNHFCIDCDVFIHETLHN 45 (51)
T ss_dssp EEE--TTTT--B-HHHHHTTTTTS-S
T ss_pred CeEECCCCCCccccCcChhhhccccC
Confidence 57999999999999888888877774
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.30 E-value=18 Score=41.67 Aligned_cols=11 Identities=27% Similarity=1.295 Sum_probs=9.3
Q ss_pred cccccCcCCcc
Q 010444 80 KKWKCDKCSKK 90 (510)
Q Consensus 80 Kp~~C~~CgK~ 90 (510)
.++.|+.|+..
T Consensus 421 ~p~~Cp~Cgs~ 431 (665)
T PRK14873 421 PDWRCPRCGSD 431 (665)
T ss_pred cCccCCCCcCC
Confidence 58999999865
No 137
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=28.72 E-value=31 Score=29.81 Aligned_cols=14 Identities=43% Similarity=1.082 Sum_probs=9.3
Q ss_pred cccccCcCCccccC
Q 010444 80 KKWKCDKCSKKYAV 93 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ 93 (510)
-.|+|..|++.|+-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PRK03976 53 GIWECRKCGAKFAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 35777777776653
No 138
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=28.59 E-value=19 Score=39.14 Aligned_cols=39 Identities=15% Similarity=0.518 Sum_probs=27.7
Q ss_pred cccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCcc
Q 010444 42 VRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKK 90 (510)
Q Consensus 42 ~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~ 90 (510)
....-|.|+.| .+.|.....++ ..-...-.|.|..|+--
T Consensus 124 t~~~~Y~Cp~C-------~kkyt~Lea~~---L~~~~~~~F~C~~C~ge 162 (436)
T KOG2593|consen 124 TNVAGYVCPNC-------QKKYTSLEALQ---LLDNETGEFHCENCGGE 162 (436)
T ss_pred cccccccCCcc-------ccchhhhHHHH---hhcccCceEEEecCCCc
Confidence 35578999999 89988766654 33333457999999743
No 139
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=28.52 E-value=31 Score=37.66 Aligned_cols=30 Identities=23% Similarity=0.624 Sum_probs=22.6
Q ss_pred cccCcCCccccChhHHHHHHHHhCCCceecC-CCCcccChh
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTIFSRRD 121 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~F~~ks 121 (510)
-+|+.|+.+..++ |.+-|+|+ |++++....
T Consensus 351 p~Cp~Cg~~m~S~----------G~~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 351 PVCPRCGGRMKSA----------GRNGFRCKKCGTRARETL 381 (421)
T ss_pred CCCCccCCchhhc----------CCCCcccccccccCCccc
Confidence 3799999774433 55589999 999988753
No 140
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=28.21 E-value=44 Score=34.89 Aligned_cols=25 Identities=28% Similarity=0.720 Sum_probs=13.0
Q ss_pred CCccccChhHHHHHHHHhCCCceecC
Q 010444 87 CSKKYAVQSDWKAHQKTCGTREYKCD 112 (510)
Q Consensus 87 CgK~F~~ks~Lk~H~rthgeKpykC~ 112 (510)
|.++|..... ..|.+.+.-+||.|+
T Consensus 116 C~~~~~Y~~~-~~HE~~C~f~~~~CP 140 (299)
T KOG3002|consen 116 CTKSFPYGEK-SKHEKVCEFRPCSCP 140 (299)
T ss_pred Cceeeccccc-cccccccccCCcCCC
Confidence 5555555544 345555433555554
No 141
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=27.99 E-value=21 Score=41.16 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=14.6
Q ss_pred CCCceecC-CCCcccChhHHHHH
Q 010444 105 GTREYKCD-CGTIFSRRDSFITH 126 (510)
Q Consensus 105 geKpykC~-Cgk~F~~kssL~~H 126 (510)
..|.-+|+ |+..|.-.+-++.|
T Consensus 675 etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 675 ETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHhcCCCCCCCCCCCcccccccC
Confidence 34566788 88888776655443
No 142
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=27.93 E-value=22 Score=29.40 Aligned_cols=20 Identities=20% Similarity=0.557 Sum_probs=15.1
Q ss_pred cCCcccccC--cCCccccChhH
Q 010444 77 HGEKKWKCD--KCSKKYAVQSD 96 (510)
Q Consensus 77 ~geKp~~C~--~CgK~F~~ks~ 96 (510)
..++-+.|. .|+.+|.....
T Consensus 23 ~~~~Y~qC~N~eCg~tF~t~es 44 (72)
T PRK09678 23 TKERYHQCQNVNCSATFITYES 44 (72)
T ss_pred hheeeeecCCCCCCCEEEEEEE
Confidence 456778898 89999986644
No 143
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=27.90 E-value=29 Score=35.28 Aligned_cols=40 Identities=20% Similarity=0.445 Sum_probs=23.7
Q ss_pred ccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCcccccCcCCccccCh
Q 010444 43 RKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQ 94 (510)
Q Consensus 43 ~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C~~CgK~F~~k 94 (510)
.+..-.|..| .+.|--.. ...-.|.-.|.|+.|++.|+--
T Consensus 129 rKeVSRCr~C-------~~rYDPVP-----~dkmwG~aef~C~~C~h~F~G~ 168 (278)
T PF15135_consen 129 RKEVSRCRKC-------RKRYDPVP-----CDKMWGIAEFHCPKCRHNFRGF 168 (278)
T ss_pred cccccccccc-------ccccCCCc-----cccccceeeeecccccccchhh
Confidence 4556778887 45542211 0112244468999999998754
No 144
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=27.36 E-value=16 Score=42.07 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.8
Q ss_pred ccccCcCCccccChhHHHHHHHHhC
Q 010444 81 KWKCDKCSKKYAVQSDWKAHQKTCG 105 (510)
Q Consensus 81 p~~C~~CgK~F~~ks~Lk~H~rthg 105 (510)
-|.|..|+|.|.....+..||++|.
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHH
Confidence 4889999999988888888888863
No 145
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=27.08 E-value=32 Score=29.84 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=10.3
Q ss_pred CcccccccCcccCC
Q 010444 4 NRFVCEICNKGFQR 17 (510)
Q Consensus 4 kpy~C~~CgK~F~~ 17 (510)
+|-+|..||..|..
T Consensus 57 ~Pa~CkkCGfef~~ 70 (97)
T COG3357 57 RPARCKKCGFEFRD 70 (97)
T ss_pred cChhhcccCccccc
Confidence 35678888888775
No 146
>PF04641 Rtf2: Rtf2 RING-finger
Probab=26.92 E-value=95 Score=31.43 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=15.4
Q ss_pred CcccccccCcccCChHHHHHHHHhc
Q 010444 4 NRFVCEICNKGFQRDQNLQLHRRGH 28 (510)
Q Consensus 4 kpy~C~~CgK~F~~~s~Lk~H~r~H 28 (510)
.|+.|...|+.|....- ...+..+
T Consensus 46 ~PiV~d~~G~LynKeai-le~Ll~~ 69 (260)
T PF04641_consen 46 DPIVSDRLGRLYNKEAI-LEFLLDK 69 (260)
T ss_pred CCeeeCCCCeeEcHHHH-HHHHHhc
Confidence 46777788888876654 4444444
No 147
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=26.66 E-value=31 Score=40.26 Aligned_cols=27 Identities=19% Similarity=0.588 Sum_probs=18.2
Q ss_pred ccCCcccccCcCCccccChhHHHHHHHHhCCCceecC-CCCc
Q 010444 76 KHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCD-CGTI 116 (510)
Q Consensus 76 H~geKp~~C~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk~ 116 (510)
|...+..+|.+|++. ...|..|+ |+-.
T Consensus 457 H~~~~~L~CH~Cg~~--------------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 457 HKATGQLRCHYCGYQ--------------EPIPQSCPECGSE 484 (730)
T ss_pred ecCCCeeEeCCCCCC--------------CCCCCCCCCCCCC
Confidence 444456788888754 24678898 9854
No 148
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=26.34 E-value=34 Score=31.72 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.5
Q ss_pred ccccccCcccCChHHHHHHHHhcC
Q 010444 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 6 y~C~~CgK~F~~~s~Lk~H~r~H~ 29 (510)
..|=+|||.|+ .|++|+++|.
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~ 97 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHY 97 (148)
T ss_pred EEEeccCcchH---HHHHHHhccc
Confidence 36999999998 6999999986
No 149
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.26 E-value=25 Score=39.19 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=10.5
Q ss_pred ccCCcccccCcCCcccc
Q 010444 76 KHGEKKWKCDKCSKKYA 92 (510)
Q Consensus 76 H~geKp~~C~~CgK~F~ 92 (510)
|..+....|.+|++...
T Consensus 235 h~~~~~l~Ch~Cg~~~~ 251 (505)
T TIGR00595 235 HKKEGKLRCHYCGYQEP 251 (505)
T ss_pred ecCCCeEEcCCCcCcCC
Confidence 44455677888876543
No 150
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.21 E-value=42 Score=26.87 Aligned_cols=9 Identities=44% Similarity=1.409 Sum_probs=5.2
Q ss_pred CCceecC-CC
Q 010444 106 TREYKCD-CG 114 (510)
Q Consensus 106 eKpykC~-Cg 114 (510)
..+|+|+ |+
T Consensus 48 g~~Y~Cp~CG 57 (61)
T COG2888 48 GNPYRCPKCG 57 (61)
T ss_pred CCceECCCcC
Confidence 3456665 65
No 151
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=25.39 E-value=18 Score=31.20 Aligned_cols=12 Identities=67% Similarity=1.561 Sum_probs=8.6
Q ss_pred ccccCcCCcccc
Q 010444 81 KWKCDKCSKKYA 92 (510)
Q Consensus 81 p~~C~~CgK~F~ 92 (510)
-|+|..|++.|+
T Consensus 53 IW~C~~C~~~~A 64 (90)
T PF01780_consen 53 IWKCKKCGKKFA 64 (90)
T ss_dssp EEEETTTTEEEE
T ss_pred EeecCCCCCEEe
Confidence 478888877764
No 152
>PRK04023 DNA polymerase II large subunit; Validated
Probab=25.36 E-value=60 Score=39.12 Aligned_cols=10 Identities=40% Similarity=0.777 Sum_probs=7.3
Q ss_pred cccccccCcc
Q 010444 5 RFVCEICNKG 14 (510)
Q Consensus 5 py~C~~CgK~ 14 (510)
...|+.|++.
T Consensus 626 ~RfCpsCG~~ 635 (1121)
T PRK04023 626 RRKCPSCGKE 635 (1121)
T ss_pred CccCCCCCCc
Confidence 4578888876
No 153
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=25.01 E-value=53 Score=25.01 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=22.0
Q ss_pred Ccccccc--cCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCC
Q 010444 4 NRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPE 51 (510)
Q Consensus 4 kpy~C~~--CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~ 51 (510)
++.+|+. |.+.+.+ ..|..|+.... ..++..|++
T Consensus 8 ~~v~C~~~cc~~~i~r-~~l~~H~~~~C-------------~~~~v~C~~ 43 (60)
T PF02176_consen 8 RPVPCPNGCCNEMIPR-KELDDHLENEC-------------PKRPVPCPY 43 (60)
T ss_dssp SEEE-TT--S-BEEEC-CCHHHHHHTTS-------------TTSEEE-SS
T ss_pred CEeeCCCCCcccceeH-HHHHHHHHccC-------------CCCcEECCC
Confidence 4567988 6666665 46999998654 556778887
No 154
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.74 E-value=55 Score=40.34 Aligned_cols=50 Identities=20% Similarity=0.528 Sum_probs=0.0
Q ss_pred cccccccCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhHhhhccCCccccc
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKC 84 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H~geKp~~C 84 (510)
.++|+.|+. ......|+.| +... +.+|.|
T Consensus 667 ~rkCPkCG~-----------------------------~t~~~fCP~C-------Gs~t---------------e~vy~C 695 (1337)
T PRK14714 667 RRRCPSCGT-----------------------------ETYENRCPDC-------GTHT---------------EPVYVC 695 (1337)
T ss_pred EEECCCCCC-----------------------------ccccccCccc-------CCcC---------------CCceeC
Q ss_pred CcCCccccChhHHHHHHHHhCCCceecC-CCC
Q 010444 85 DKCSKKYAVQSDWKAHQKTCGTREYKCD-CGT 115 (510)
Q Consensus 85 ~~CgK~F~~ks~Lk~H~rthgeKpykC~-Cgk 115 (510)
+.|+........ . ...|+ |+.
T Consensus 696 PsCGaev~~des---------~-a~~CP~CGt 717 (1337)
T PRK14714 696 PDCGAEVPPDES---------G-RVECPRCDV 717 (1337)
T ss_pred ccCCCccCCCcc---------c-cccCCCCCC
No 155
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.57 E-value=21 Score=41.62 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=10.3
Q ss_pred CCcccccCcCCcc
Q 010444 78 GEKKWKCDKCSKK 90 (510)
Q Consensus 78 geKp~~C~~CgK~ 90 (510)
...|..|+.|+-.
T Consensus 472 ~~~p~~Cp~Cgs~ 484 (730)
T COG1198 472 EPIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCCC
Confidence 4578899999865
No 156
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=24.30 E-value=55 Score=26.14 Aligned_cols=8 Identities=50% Similarity=1.522 Sum_probs=4.9
Q ss_pred CceecC-CC
Q 010444 107 REYKCD-CG 114 (510)
Q Consensus 107 KpykC~-Cg 114 (510)
.+|+|+ |+
T Consensus 47 ~~Y~CP~CG 55 (59)
T PRK14890 47 NPYTCPKCG 55 (59)
T ss_pred CceECCCCC
Confidence 456665 65
No 157
>PF15269 zf-C2H2_7: Zinc-finger
Probab=23.45 E-value=53 Score=24.94 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=17.5
Q ss_pred cccCcCCccccChhHHHHHHHH
Q 010444 82 WKCDKCSKKYAVQSDWKAHQKT 103 (510)
Q Consensus 82 ~~C~~CgK~F~~ks~Lk~H~rt 103 (510)
|+|-.|..+...+++|-.||+-
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 6788888888888888888875
No 158
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=23.24 E-value=29 Score=26.05 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=6.2
Q ss_pred cccccCcCCc
Q 010444 80 KKWKCDKCSK 89 (510)
Q Consensus 80 Kp~~C~~CgK 89 (510)
.+..|+.|+.
T Consensus 25 ~~~~CP~Cg~ 34 (52)
T TIGR02605 25 PLATCPECGG 34 (52)
T ss_pred CCCCCCCCCC
Confidence 4456777764
No 159
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=23.20 E-value=30 Score=31.57 Aligned_cols=16 Identities=25% Similarity=0.976 Sum_probs=12.6
Q ss_pred CcccccCcCCccccCh
Q 010444 79 EKKWKCDKCSKKYAVQ 94 (510)
Q Consensus 79 eKp~~C~~CgK~F~~k 94 (510)
...|+|..|++.|...
T Consensus 51 ~qRyrC~~C~~tf~~~ 66 (129)
T COG3677 51 HQRYKCKSCGSTFTVE 66 (129)
T ss_pred ccccccCCcCcceeee
Confidence 5578999999888755
No 160
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.84 E-value=32 Score=37.81 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCcccccccccccccceeeCCCCCCCCCCCCCccCChhHHHhH-hhhccCCcccccCcCC
Q 010444 20 NLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPSCVHHNPARALGDLTGIKKH-FSRKHGEKKWKCDKCS 88 (510)
Q Consensus 20 ~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~C~C~~~~~~k~F~~~s~Lk~H-~r~H~geKp~~C~~Cg 88 (510)
.+..|.|.|. =..|.||-- .+.+-+...-.+| .+.|+-..|--|+.|+
T Consensus 80 ~fvvHkrChe--------------fVtF~CPGa-------dkg~dtDdpr~kHkf~~~tYssPTFCDhCG 128 (683)
T KOG0696|consen 80 CFVVHKRCHE--------------FVTFSCPGA-------DKGPDTDDPRSKHKFKIHTYSSPTFCDHCG 128 (683)
T ss_pred eehhhhhhcc--------------eEEEECCCC-------CCCCCCCCcccccceeeeecCCCchhhhHH
Confidence 3567777773 345667654 4555554444455 3455555566677776
No 161
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=22.73 E-value=1.7e+02 Score=27.87 Aligned_cols=20 Identities=10% Similarity=0.511 Sum_probs=13.6
Q ss_pred ccCcccCChHHHHHHHHhcC
Q 010444 10 ICNKGFQRDQNLQLHRRGHN 29 (510)
Q Consensus 10 ~CgK~F~~~s~Lk~H~r~H~ 29 (510)
+|+..|....-|.+=.+.+.
T Consensus 31 mc~Ts~rhSNCLdqfkka~~ 50 (162)
T PF07800_consen 31 MCDTSYRHSNCLDQFKKAYG 50 (162)
T ss_pred ccCCccchhHHHHHHHHHhc
Confidence 35667777777777766664
No 162
>PF15269 zf-C2H2_7: Zinc-finger
Probab=22.42 E-value=56 Score=24.79 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.7
Q ss_pred cccccccCcccCChHHHHHHHHhc
Q 010444 5 RFVCEICNKGFQRDQNLQLHRRGH 28 (510)
Q Consensus 5 py~C~~CgK~F~~~s~Lk~H~r~H 28 (510)
.|+|-+|......++.|-.||+.-
T Consensus 20 ~ykcfqcpftc~~kshl~nhmky~ 43 (54)
T PF15269_consen 20 KYKCFQCPFTCNEKSHLFNHMKYS 43 (54)
T ss_pred cceeecCCcccchHHHHHHHHHHH
Confidence 378999999999999999999753
No 163
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.30 E-value=43 Score=37.32 Aligned_cols=8 Identities=25% Similarity=0.767 Sum_probs=4.3
Q ss_pred cccCcCCc
Q 010444 82 WKCDKCSK 89 (510)
Q Consensus 82 ~~C~~CgK 89 (510)
.+|+.|+-
T Consensus 223 ~~C~~C~~ 230 (505)
T TIGR00595 223 LCCPNCDV 230 (505)
T ss_pred cCCCCCCC
Confidence 45666653
No 164
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=49 Score=32.09 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=10.0
Q ss_pred ccccceeeCCCCCC
Q 010444 41 EVRKRVYICPEPSC 54 (510)
Q Consensus 41 ~~~ekpy~C~~C~C 54 (510)
+..+..|+|++|-|
T Consensus 126 ~~~~~~~~CPiCl~ 139 (187)
T KOG0320|consen 126 LRKEGTYKCPICLD 139 (187)
T ss_pred cccccccCCCceec
Confidence 34556799999954
No 165
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.01 E-value=27 Score=35.16 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=18.9
Q ss_pred CCcccccccCcccCChHHHHHHHHhc
Q 010444 3 TNRFVCEICNKGFQRDQNLQLHRRGH 28 (510)
Q Consensus 3 ekpy~C~~CgK~F~~~s~Lk~H~r~H 28 (510)
++.+.|++|+..|..+.-+.--.|+-
T Consensus 17 kk~ieCPvC~tkFkkeev~tgsiRii 42 (267)
T COG1655 17 KKTIECPVCNTKFKKEEVKTGSIRII 42 (267)
T ss_pred hceeccCcccchhhhhheeccceeEe
Confidence 46789999999999876554444443
No 166
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=21.81 E-value=26 Score=25.35 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=12.5
Q ss_pred hHhhhccCCcccccCcCCccc
Q 010444 71 KHFSRKHGEKKWKCDKCSKKY 91 (510)
Q Consensus 71 ~H~r~H~geKp~~C~~CgK~F 91 (510)
-+.....+.+.|+|.+|+..-
T Consensus 14 p~~~~~~~~~~w~C~~C~~~N 34 (40)
T PF04810_consen 14 PFCQFDDGGKTWICNFCGTKN 34 (40)
T ss_dssp TTSEEETTTTEEEETTT--EE
T ss_pred CcceEcCCCCEEECcCCCCcC
Confidence 334445566789999998654
No 167
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=21.61 E-value=60 Score=31.23 Aligned_cols=54 Identities=24% Similarity=0.491 Sum_probs=24.9
Q ss_pred cccccc----cCcccCChHHHHHHHHhcCCCcccccccccccccceeeCCC--CCCCCCCCCCccCChhHHHhHhhhccC
Q 010444 5 RFVCEI----CNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPE--PSCVHHNPARALGDLTGIKKHFSRKHG 78 (510)
Q Consensus 5 py~C~~----CgK~F~~~s~Lk~H~r~H~~p~k~~~~~~~~~~ekpy~C~~--C~C~~~~~~k~F~~~s~Lk~H~r~H~g 78 (510)
.|.|.. |...|... ....|.+.- .-+|+.||. ..|.+. .....|..|....|.
T Consensus 14 ~~pC~~~~~GC~~~~~~~-~~~~HE~~C--------------~~~p~~CP~~~~~C~~~------G~~~~l~~Hl~~~H~ 72 (198)
T PF03145_consen 14 KFPCKNAKYGCTETFPYS-EKREHEEEC--------------PFRPCSCPFPGSGCDWQ------GSYKELLDHLRDKHS 72 (198)
T ss_dssp -EE-CCGGGT---EE-GG-GHHHHHHT---------------TTSEEE-SSSSTT---E------EECCCHHHHHHHHTT
T ss_pred eecCCCCCCCCccccccc-ChhhHhccC--------------CCcCCcCCCCCCCcccc------CCHHHHHHHHHHHCC
Confidence 356665 66665543 456676654 456777877 555211 123456777776665
Q ss_pred C
Q 010444 79 E 79 (510)
Q Consensus 79 e 79 (510)
.
T Consensus 73 ~ 73 (198)
T PF03145_consen 73 W 73 (198)
T ss_dssp T
T ss_pred C
Confidence 4
No 168
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=21.35 E-value=4.4e+02 Score=30.87 Aligned_cols=9 Identities=44% Similarity=1.180 Sum_probs=4.3
Q ss_pred cccccccCc
Q 010444 5 RFVCEICNK 13 (510)
Q Consensus 5 py~C~~CgK 13 (510)
|++|+.|..
T Consensus 62 rvrCeLCP~ 70 (900)
T KOG0956|consen 62 RVRCELCPH 70 (900)
T ss_pred cceeecccC
Confidence 345555543
No 169
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=86 Score=30.03 Aligned_cols=21 Identities=33% Similarity=0.806 Sum_probs=12.6
Q ss_pred cccccCcCCccccChhHHHHH
Q 010444 80 KKWKCDKCSKKYAVQSDWKAH 100 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ks~Lk~H 100 (510)
+-|.|+.|+|.|-.-+++.+=
T Consensus 129 ~f~~C~~CgkiYW~GsHw~~m 149 (165)
T COG1656 129 EFYRCPKCGKIYWKGSHWRRM 149 (165)
T ss_pred ceeECCCCcccccCchHHHHH
Confidence 345666666666666666543
No 170
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=20.98 E-value=34 Score=32.32 Aligned_cols=18 Identities=11% Similarity=0.536 Sum_probs=13.7
Q ss_pred cccccCcCCccccChhHH
Q 010444 80 KKWKCDKCSKKYAVQSDW 97 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ks~L 97 (510)
+.-.|..|+++|++-...
T Consensus 27 RRReC~~C~~RFTTfE~~ 44 (156)
T COG1327 27 RRRECLECGERFTTFERA 44 (156)
T ss_pred hhhcccccccccchhhee
Confidence 445799999999876554
No 171
>PLN02705 beta-amylase
Probab=20.96 E-value=1.5e+02 Score=34.03 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=6.1
Q ss_pred CCCCCCcccc
Q 010444 481 RVPMMTPFHQ 490 (510)
Q Consensus 481 ~~~~~~~~~~ 490 (510)
+++..-.|||
T Consensus 320 KlqvVmSFHq 329 (681)
T PLN02705 320 KLQVVMAFHE 329 (681)
T ss_pred eEEEEEEeec
Confidence 3455667777
No 172
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.37 E-value=50 Score=24.43 Aligned_cols=11 Identities=27% Similarity=1.056 Sum_probs=7.6
Q ss_pred CcccccCcCCc
Q 010444 79 EKKWKCDKCSK 89 (510)
Q Consensus 79 eKp~~C~~CgK 89 (510)
...|+|..|.+
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 46677777765
No 173
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=26 Score=40.54 Aligned_cols=21 Identities=24% Similarity=0.675 Sum_probs=15.5
Q ss_pred cccccCcCCccccChhHHHHH
Q 010444 80 KKWKCDKCSKKYAVQSDWKAH 100 (510)
Q Consensus 80 Kp~~C~~CgK~F~~ks~Lk~H 100 (510)
|--+||.|+..|...+.++.|
T Consensus 677 RqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 677 RQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hcCCCCCCCCCCCcccccccC
Confidence 345799999999877766554
Done!