Query 010445
Match_columns 510
No_of_seqs 255 out of 1572
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 00:36:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4443 Putative transcription 100.0 1.3E-46 2.9E-51 403.3 8.2 411 33-494 17-435 (694)
2 KOG1244 Predicted transcriptio 99.7 1.6E-18 3.4E-23 171.6 0.6 114 25-138 215-330 (336)
3 KOG1512 PHD Zn-finger protein 99.5 1.6E-14 3.4E-19 144.3 1.5 101 32-134 256-357 (381)
4 KOG0954 PHD finger protein [Ge 99.2 1.1E-12 2.5E-17 143.8 0.5 249 33-323 270-536 (893)
5 KOG4299 PHD Zn-finger protein 98.6 1.8E-08 4E-13 110.2 3.8 48 91-138 255-304 (613)
6 KOG0383 Predicted helicase [Ge 98.6 6.3E-08 1.4E-12 108.6 6.2 185 59-251 1-264 (696)
7 PF00628 PHD: PHD-finger; Int 98.5 3.1E-08 6.8E-13 75.2 0.2 48 91-138 1-50 (51)
8 KOG4323 Polycomb-like PHD Zn-f 98.4 2.3E-07 5.1E-12 99.6 5.0 133 91-234 85-227 (464)
9 KOG0825 PHD Zn-finger protein 98.4 1E-07 2.2E-12 106.0 2.1 48 91-138 217-265 (1134)
10 smart00249 PHD PHD zinc finger 98.3 6.9E-07 1.5E-11 65.1 3.7 46 91-136 1-47 (47)
11 PF15446 zf-PHD-like: PHD/FYVE 98.3 6.9E-07 1.5E-11 84.3 4.4 86 36-123 1-143 (175)
12 KOG4299 PHD Zn-finger protein 98.3 5.5E-07 1.2E-11 98.8 4.1 51 34-90 253-303 (613)
13 KOG4323 Polycomb-like PHD Zn-f 98.2 8.1E-07 1.8E-11 95.5 3.5 114 33-159 82-239 (464)
14 PF00628 PHD: PHD-finger; Int 98.1 6.9E-07 1.5E-11 67.9 1.1 49 174-229 1-49 (51)
15 KOG0956 PHD finger protein AF1 98.1 1.2E-06 2.7E-11 96.7 2.4 133 92-231 8-180 (900)
16 smart00249 PHD PHD zinc finger 98.0 5.7E-06 1.2E-10 60.1 3.2 47 174-228 1-47 (47)
17 KOG1512 PHD Zn-finger protein 97.9 4.6E-06 9.9E-11 84.4 1.8 80 100-226 275-357 (381)
18 KOG1244 Predicted transcriptio 97.8 6.6E-06 1.4E-10 82.8 1.1 96 91-231 226-331 (336)
19 KOG4443 Putative transcription 97.7 8.9E-06 1.9E-10 89.9 0.7 87 83-182 12-101 (694)
20 KOG0955 PHD finger protein BR1 97.7 1.9E-05 4.1E-10 92.3 3.1 111 91-207 221-362 (1051)
21 KOG0955 PHD finger protein BR1 97.7 1.7E-05 3.7E-10 92.6 2.8 79 33-120 218-361 (1051)
22 KOG0956 PHD finger protein AF1 97.6 2.7E-05 5.9E-10 86.3 2.1 52 36-95 7-68 (900)
23 KOG0383 Predicted helicase [Ge 97.6 3.5E-05 7.5E-10 87.0 2.8 92 109-229 1-92 (696)
24 COG5141 PHD zinc finger-contai 97.4 6.7E-05 1.5E-09 80.7 1.7 50 33-90 192-241 (669)
25 KOG1973 Chromatin remodeling p 97.3 6.8E-05 1.5E-09 76.4 1.1 39 95-138 226-267 (274)
26 COG5141 PHD zinc finger-contai 97.3 9.9E-05 2.1E-09 79.5 2.2 109 89-206 193-334 (669)
27 KOG1473 Nucleosome remodeling 97.1 8.3E-05 1.8E-09 86.2 -0.8 92 33-138 343-478 (1414)
28 cd04718 BAH_plant_2 BAH, or Br 97.0 0.00043 9.3E-09 64.7 2.3 26 113-138 1-26 (148)
29 KOG0957 PHD finger protein [Ge 96.9 0.00037 8E-09 75.4 2.0 80 35-120 120-210 (707)
30 KOG0825 PHD Zn-finger protein 96.9 0.00042 9.1E-09 78.1 2.2 50 33-90 214-264 (1134)
31 PF15446 zf-PHD-like: PHD/FYVE 96.9 0.0011 2.5E-08 63.0 4.7 33 91-123 1-36 (175)
32 KOG0957 PHD finger protein [Ge 96.8 0.00045 9.7E-09 74.7 0.9 47 91-137 546-596 (707)
33 KOG0954 PHD finger protein [Ge 96.7 0.00083 1.8E-08 75.5 2.5 46 91-138 273-320 (893)
34 COG5034 TNG2 Chromatin remodel 96.6 0.00096 2.1E-08 67.0 1.8 44 91-138 223-269 (271)
35 KOG1245 Chromatin remodeling c 96.2 0.001 2.2E-08 80.8 -0.8 48 91-138 1110-1157(1404)
36 KOG1973 Chromatin remodeling p 95.9 0.0029 6.4E-08 64.6 1.1 34 53-91 231-267 (274)
37 KOG1473 Nucleosome remodeling 95.7 0.0052 1.1E-07 71.9 2.1 126 91-231 346-479 (1414)
38 KOG2752 Uncharacterized conser 95.0 0.018 3.8E-07 59.7 3.0 91 103-207 67-166 (345)
39 PF13831 PHD_2: PHD-finger; PD 94.2 0.011 2.3E-07 42.8 -0.5 34 52-89 2-35 (36)
40 PF13831 PHD_2: PHD-finger; PD 93.9 0.01 2.3E-07 42.8 -0.9 33 102-136 2-35 (36)
41 KOG1245 Chromatin remodeling c 93.7 0.019 4.2E-07 70.0 0.1 54 29-90 1103-1156(1404)
42 cd04718 BAH_plant_2 BAH, or Br 93.7 0.037 7.9E-07 52.0 1.9 25 63-90 1-25 (148)
43 PF07227 DUF1423: Protein of u 93.2 0.068 1.5E-06 57.9 3.2 79 160-249 124-213 (446)
44 KOG1701 Focal adhesion adaptor 92.8 0.019 4.1E-07 61.6 -1.6 138 36-205 276-428 (468)
45 COG5034 TNG2 Chromatin remodel 91.1 0.16 3.5E-06 51.5 2.8 33 53-90 233-268 (271)
46 PF13832 zf-HC5HC2H_2: PHD-zin 87.5 0.48 1E-05 41.4 2.9 72 36-121 2-87 (110)
47 PF14446 Prok-RING_1: Prokaryo 87.4 0.43 9.3E-06 37.7 2.2 36 34-73 5-40 (54)
48 PF12861 zf-Apc11: Anaphase-pr 86.4 0.22 4.8E-06 42.7 0.1 46 91-138 34-79 (85)
49 PF13639 zf-RING_2: Ring finge 84.5 0.16 3.4E-06 37.4 -1.5 43 174-229 2-44 (44)
50 PF13639 zf-RING_2: Ring finge 82.5 0.21 4.5E-06 36.8 -1.6 44 35-90 1-44 (44)
51 PF13901 DUF4206: Domain of un 80.6 0.96 2.1E-05 44.3 1.9 45 85-138 144-197 (202)
52 PF11793 FANCL_C: FANCL C-term 79.2 0.47 1E-05 39.0 -0.7 54 35-90 3-62 (70)
53 PF14446 Prok-RING_1: Prokaryo 77.8 1.4 3E-05 34.9 1.6 31 91-121 7-38 (54)
54 KOG1952 Transcription factor N 76.0 1.4 3.1E-05 51.2 1.8 54 33-90 190-243 (950)
55 KOG0804 Cytoplasmic Zn-finger 76.0 2 4.4E-05 46.9 2.8 82 32-145 173-254 (493)
56 KOG1701 Focal adhesion adaptor 74.4 2.1 4.6E-05 46.5 2.4 62 59-120 351-429 (468)
57 PF07227 DUF1423: Protein of u 74.1 2.5 5.3E-05 46.3 2.8 39 82-121 122-163 (446)
58 KOG1246 DNA-binding protein ju 73.6 2.6 5.7E-05 49.9 3.2 47 91-138 157-203 (904)
59 PF00130 C1_1: Phorbol esters/ 73.2 2.7 5.8E-05 31.9 2.1 37 170-207 9-45 (53)
60 PF13771 zf-HC5HC2H: PHD-like 70.3 1.8 3.8E-05 36.3 0.6 29 90-121 37-68 (90)
61 PF13832 zf-HC5HC2H_2: PHD-zin 69.6 2.9 6.2E-05 36.5 1.8 34 32-72 53-88 (110)
62 KOG2272 Focal adhesion protein 69.3 1.5 3.3E-05 44.6 0.0 56 113-168 161-230 (332)
63 PF13771 zf-HC5HC2H: PHD-like 69.3 2.7 5.8E-05 35.2 1.5 36 30-73 32-70 (90)
64 KOG1632 Uncharacterized PHD Zn 68.5 4.9 0.00011 42.8 3.5 108 94-231 64-176 (345)
65 KOG4628 Predicted E3 ubiquitin 66.7 4.2 9E-05 43.4 2.6 48 35-99 230-277 (348)
66 PF12678 zf-rbx1: RING-H2 zinc 65.3 3 6.5E-05 34.4 1.0 50 34-90 19-73 (73)
67 PF11793 FANCL_C: FANCL C-term 63.3 3.5 7.7E-05 33.8 1.0 54 174-230 4-63 (70)
68 PF07649 C1_3: C1-like domain; 60.6 3.2 7E-05 28.4 0.3 29 91-119 2-30 (30)
69 PF10497 zf-4CXXC_R1: Zinc-fin 59.5 4.7 0.0001 35.8 1.2 61 33-99 6-80 (105)
70 KOG1632 Uncharacterized PHD Zn 59.0 5.4 0.00012 42.4 1.8 38 189-231 74-113 (345)
71 KOG2807 RNA polymerase II tran 54.5 8.4 0.00018 40.7 2.2 47 171-230 329-375 (378)
72 PF12861 zf-Apc11: Anaphase-pr 52.7 8.1 0.00018 33.3 1.5 52 34-90 21-78 (85)
73 KOG1829 Uncharacterized conser 51.1 3.7 8E-05 46.5 -1.1 47 85-138 503-558 (580)
74 cd00162 RING RING-finger (Real 50.9 6.8 0.00015 27.2 0.7 41 37-90 2-42 (45)
75 KOG1081 Transcription factor N 50.7 5.6 0.00012 43.9 0.3 70 173-257 90-163 (463)
76 cd00029 C1 Protein kinase C co 50.6 9 0.0002 28.1 1.3 35 172-207 11-45 (50)
77 smart00109 C1 Protein kinase C 49.9 8.7 0.00019 27.9 1.1 34 172-207 11-44 (49)
78 KOG3612 PHD Zn-finger protein 49.7 14 0.0003 41.5 3.1 52 31-92 57-108 (588)
79 PF13901 DUF4206: Domain of un 49.5 16 0.00034 35.9 3.2 37 35-71 153-189 (202)
80 KOG1844 PHD Zn-finger proteins 48.3 10 0.00022 41.7 1.8 40 187-233 98-137 (508)
81 PF05502 Dynactin_p62: Dynacti 48.1 17 0.00038 40.3 3.6 59 52-118 3-63 (483)
82 smart00744 RINGv The RING-vari 47.7 5.8 0.00013 30.4 -0.1 36 36-75 1-39 (49)
83 PHA02929 N1R/p28-like protein; 46.4 12 0.00027 37.9 1.9 42 33-74 173-214 (238)
84 TIGR00595 priA primosomal prot 45.4 22 0.00047 39.6 3.8 18 259-276 403-420 (505)
85 PLN03208 E3 ubiquitin-protein 44.0 15 0.00033 36.2 2.1 38 28-73 12-49 (193)
86 COG5243 HRD1 HRD ubiquitin lig 43.8 6.9 0.00015 42.1 -0.3 55 31-98 284-343 (491)
87 KOG1081 Transcription factor N 43.6 23 0.0005 39.2 3.6 36 30-73 85-120 (463)
88 PF14634 zf-RING_5: zinc-RING 43.0 9.9 0.00022 28.0 0.5 43 175-230 2-44 (44)
89 PHA02825 LAP/PHD finger-like p 42.7 12 0.00026 35.8 1.1 42 29-74 3-44 (162)
90 PRK14873 primosome assembly pr 42.4 22 0.00047 41.2 3.3 17 259-275 560-576 (665)
91 COG1107 Archaea-specific RecJ- 42.3 24 0.00052 40.2 3.5 31 82-115 52-91 (715)
92 PF05715 zf-piccolo: Piccolo Z 41.9 12 0.00026 30.3 0.8 55 35-91 3-57 (61)
93 PF13341 RAG2_PHD: RAG2 PHD do 41.4 16 0.00035 30.6 1.5 41 188-229 28-69 (78)
94 KOG1169 Diacylglycerol kinase 40.7 28 0.00061 40.0 3.8 81 36-124 46-149 (634)
95 smart00184 RING Ring finger. E 38.7 11 0.00025 25.0 0.2 30 37-74 1-30 (39)
96 PF13717 zinc_ribbon_4: zinc-r 38.6 19 0.00042 25.9 1.4 26 175-200 5-35 (36)
97 PF05502 Dynactin_p62: Dynacti 38.4 21 0.00045 39.7 2.3 31 103-138 4-34 (483)
98 PHA02862 5L protein; Provision 38.4 14 0.0003 35.0 0.8 38 34-75 2-39 (156)
99 KOG1169 Diacylglycerol kinase 38.3 7.7 0.00017 44.3 -1.0 102 91-211 46-150 (634)
100 PF08746 zf-RING-like: RING-li 38.1 6.8 0.00015 29.3 -1.0 41 92-136 1-43 (43)
101 KOG2041 WD40 repeat protein [G 38.1 20 0.00044 41.7 2.2 47 91-139 1119-1165(1189)
102 KOG2462 C2H2-type Zn-finger pr 36.3 27 0.00059 36.2 2.6 14 187-200 212-225 (279)
103 PF00412 LIM: LIM domain; Int 35.2 16 0.00035 27.7 0.6 13 134-146 24-36 (58)
104 smart00547 ZnF_RBZ Zinc finger 35.0 26 0.00056 22.8 1.5 9 82-90 1-9 (26)
105 PF00130 C1_1: Phorbol esters/ 34.7 24 0.00053 26.5 1.5 31 91-121 13-45 (53)
106 KOG2626 Histone H3 (Lys4) meth 34.6 37 0.0008 38.2 3.4 45 187-231 32-76 (544)
107 PF00641 zf-RanBP: Zn-finger i 33.0 22 0.00048 24.2 0.9 11 128-138 2-12 (30)
108 KOG4628 Predicted E3 ubiquitin 33.0 22 0.00048 38.1 1.4 45 91-138 231-275 (348)
109 PF13719 zinc_ribbon_5: zinc-r 31.7 29 0.00062 25.0 1.4 27 175-201 5-36 (37)
110 PF10497 zf-4CXXC_R1: Zinc-fin 30.7 25 0.00054 31.2 1.1 35 111-145 37-79 (105)
111 COG5151 SSL1 RNA polymerase II 30.7 27 0.0006 36.9 1.6 11 80-90 305-315 (421)
112 KOG2752 Uncharacterized conser 30.2 34 0.00074 36.2 2.2 19 103-121 147-166 (345)
113 PF12773 DZR: Double zinc ribb 28.8 50 0.0011 24.7 2.3 9 104-112 12-20 (50)
114 KOG1246 DNA-binding protein ju 28.6 41 0.00088 40.2 2.7 48 34-90 155-202 (904)
115 PRK05580 primosome assembly pr 28.4 56 0.0012 37.8 3.7 18 259-276 571-588 (679)
116 PF04216 FdhE: Protein involve 27.9 12 0.00025 38.5 -1.7 59 173-231 173-247 (290)
117 KOG0827 Predicted E3 ubiquitin 27.9 18 0.0004 39.2 -0.3 38 34-75 4-41 (465)
118 PF03107 C1_2: C1 domain; Int 27.1 61 0.0013 22.2 2.3 29 91-119 2-30 (30)
119 KOG1734 Predicted RING-contain 27.0 22 0.00048 36.9 0.2 41 32-73 222-265 (328)
120 COG1198 PriA Primosomal protei 26.9 47 0.001 39.0 2.7 16 259-274 625-640 (730)
121 COG2888 Predicted Zn-ribbon RN 26.7 46 0.00099 27.1 1.8 27 82-111 26-57 (61)
122 KOG1493 Anaphase-promoting com 26.3 6.7 0.00014 33.4 -3.0 52 85-138 22-78 (84)
123 KOG1829 Uncharacterized conser 26.3 27 0.00058 39.8 0.6 38 35-72 512-549 (580)
124 KOG3576 Ovo and related transc 26.3 17 0.00037 36.4 -0.8 57 47-118 110-187 (267)
125 KOG3053 Uncharacterized conser 26.2 19 0.00042 37.0 -0.4 57 173-232 21-81 (293)
126 KOG3612 PHD Zn-finger protein 25.9 49 0.0011 37.4 2.5 47 91-140 62-109 (588)
127 COG0068 HypF Hydrogenase matur 25.8 29 0.00062 40.4 0.8 37 125-168 96-132 (750)
128 PRK03564 formate dehydrogenase 24.9 48 0.001 35.0 2.1 59 173-231 188-261 (309)
129 PRK14890 putative Zn-ribbon RN 24.8 63 0.0014 26.2 2.3 8 82-89 24-31 (59)
130 PF07191 zinc-ribbons_6: zinc- 24.4 31 0.00068 28.8 0.6 28 153-180 11-38 (70)
131 KOG0804 Cytoplasmic Zn-finger 24.4 26 0.00056 38.6 0.1 44 91-140 177-221 (493)
132 KOG2041 WD40 repeat protein [G 23.3 51 0.0011 38.6 2.1 49 33-91 1116-1164(1189)
133 cd00350 rubredoxin_like Rubred 23.1 64 0.0014 22.6 1.8 9 129-137 16-24 (33)
134 PF13913 zf-C2HC_2: zinc-finge 23.1 38 0.00082 22.4 0.7 15 53-67 1-15 (25)
135 KOG2807 RNA polymerase II tran 22.3 57 0.0012 34.8 2.1 18 126-143 341-360 (378)
136 KOG1280 Uncharacterized conser 22.3 48 0.001 35.6 1.5 35 52-100 6-43 (381)
137 PF06524 NOA36: NOA36 protein; 21.8 35 0.00077 35.3 0.5 26 175-201 128-153 (314)
138 PF13922 PHD_3: PHD domain of 21.2 23 0.00049 29.3 -0.8 20 103-122 42-61 (69)
139 PF10367 Vps39_2: Vacuolar sor 21.2 60 0.0013 27.4 1.7 29 91-120 80-108 (109)
140 KOG2462 C2H2-type Zn-finger pr 21.1 41 0.0009 34.9 0.8 65 170-238 159-231 (279)
141 PF09297 zf-NADH-PPase: NADH p 20.9 50 0.0011 22.8 1.0 26 173-198 4-29 (32)
142 PF13923 zf-C3HC4_2: Zinc fing 20.5 31 0.00067 24.6 -0.2 31 37-74 1-31 (39)
143 PF04216 FdhE: Protein involve 20.5 52 0.0011 33.8 1.4 33 34-66 172-209 (290)
No 1
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=100.00 E-value=1.3e-46 Score=403.34 Aligned_cols=411 Identities=39% Similarity=0.737 Sum_probs=348.6
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCcCcccccCCCCcceEEcCCCCC
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDA 112 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~C~vC~~~gd~~~lL~Cd~C~~ 112 (510)
...+|.+|...| ++....|+.|..|+..||++|+..+.+...+. ..|+|+.|++|..|+..+++.++++|+.|+.
T Consensus 17 ~~~mc~l~~s~G---~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~--~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDv 91 (694)
T KOG4443|consen 17 VCLMCPLCGSSG---KGRAGRLLACSDCGQKYHPYCVTSWAQHAVLS--GGWRCPSCRVCEACGTTGDPKKFLLCKRCDV 91 (694)
T ss_pred hhhhhhhhcccc---ccccCcchhhhhhcccCCcchhhHHHhHHHhc--CCcccCCceeeeeccccCCcccccccccccc
Confidence 345677776655 45667899999999999999999988765443 4599999999999999999999999999999
Q ss_pred cccccccCCCCcCCCCCCccccCCcccccCCCCCCCCCCccccccCccccccccccccccccccccccccCCCCCCCcee
Q 010445 113 AYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVC 192 (510)
Q Consensus 113 ~YH~~CL~P~l~~ip~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~~lC~~C~~~~~kg~~CpVC~r~Y~d~e~~~mLq 192 (510)
.||.+|+.|++..++.++|+|+.|+.|..|..+.++ +..+|..++..|+.|.. +.|||||.++|++.+..+|++
T Consensus 92 syh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg--~s~~~~~~~~~~~~c~s----~~~cPvc~~~Y~~~e~~~~~~ 165 (694)
T KOG4443|consen 92 SYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPG--LSLDLQEGYLQCAPCAS----LSYCPVCLIVYQDSESLPMVC 165 (694)
T ss_pred cccccccCCccccccCcccccHHHHhhhhccccccc--cchhhhccCcccccccc----cccCchHHHhhhhccchhhHH
Confidence 999999999999999999999999999999998877 67788888999999986 679999999999999999999
Q ss_pred ccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCCCCCCCCcchHHHHHHHhhccccccHHHHHHHHHhcCCCCcccc
Q 010445 193 CDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDLEDAVRELWRRKDMADKDLIASLRAAAGLPTEDEI 272 (510)
Q Consensus 193 Cd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~~~~~I~~~k~~~~r~Wr~~~~~~~~~i~slR~~~glp~~eei 272 (510)
|+.|.+|.|..|+++.+++|.++.++ +.|.|.+||...++++++.+++.+.|++.......++..++++.-|.
T Consensus 166 c~~c~rwsh~~c~~~sdd~~~q~~vD--~~~~CS~CR~es~qvKdi~~~vqe~~~~k~~~~~~~~~tls~~a~lq----- 238 (694)
T KOG4443|consen 166 CSICQRWSHGGCDGISDDKYMQAQVD--LQYKCSTCRGESYQVKDISDALQETWKAKDKPDKILIATLSAQAALQ----- 238 (694)
T ss_pred HHHhcccccCCCCccchHHHHHHhhh--hhcccceeehhhhhhhhHHHHHHhhcchhhccccceeehhhhhhhhh-----
Confidence 99999999999999999999998876 89999999999999999999999999999999999998888877653
Q ss_pred ccCCCCCCCccCCchhhhhhhhcccccccCCCCCCCCCchhhhcccccCCCCCcccCCCCCCCCCCCCCCCCCCcccccc
Q 010445 273 FSISPYSDDEENGPVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKKYPRKKGYQMPLNSKPEPDQSFEGYHDVHS 352 (510)
Q Consensus 273 ~s~~p~sdd~~~~~~~~~~~~~~~~~~s~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (510)
.+.+++ .++.+++.++..++++.+++...+....+.+...+|... .+. .+.|+.+
T Consensus 239 ----------~~~~~~-----~~s~~~k~~~~~~~~~~~s~a~gq~s~~~~~~~~~g~~~-----dp~-----~~~e~~s 293 (694)
T KOG4443|consen 239 ----------MHHAVI-----GDSSADKAGSSANSGSATSGASGQLSLTTANTPTLGVSL-----DPV-----KLQEVGS 293 (694)
T ss_pred ----------hccccc-----cccccccccCcccCCcccccccccCCcccccccccCccc-----chh-----hhhhccc
Confidence 333333 566778889999999999999999887777777777665 222 5566777
Q ss_pred c----CCCCCCCCCCCCCCCCCCCCCcccccccCCCccccCCCCcccccccceeeccCCCccce-eeeecCCCCCCCCCC
Q 010445 353 Y----GNSFGDDTQSPKNEGLDIPSSVAGIVSHTEGVCSISQPGILKHKYVDEVMVSDDDKISR-VKFKTSKPHDLDSGE 427 (510)
Q Consensus 353 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 427 (510)
| +..+..+...+ +++...+.+..|++++-.-+-.+.+..+.+.||+.+|...| ++||++||+++++ +
T Consensus 294 E~~a~~~v~~e~vv~d-------~t~~~~~~~~~e~~~~p~~r~~~~~~m~~~~~vt~~e~~~r~~r~~Stk~~~~~~-~ 365 (694)
T KOG4443|consen 294 ERKAKLLVKQEAVVKD-------STETPTVNSRAEEIGTPEKRLNANATMTAINQVTSEEKPTRTARIKSTKPPDSDS-E 365 (694)
T ss_pred hhhhhhccchhhhhhc-------cccCcccccchhhccCccccccccceeeeeeccccccccceeeecCCCCCCCcch-h
Confidence 7 34455555555 44455566778999999999999999999999985554445 9999999999999 5
Q ss_pred cccccccccccccceeEEEeecccccccCCCCCCCccchhcccc--ccCCCCCC-Ccccceecceeeecc
Q 010445 428 DDGKHVSKSKTIKAKKLVINLGARKINVTNSPRSDASSCQREQD--LTTSNGIE-DPSLQRMNSKFVLDR 494 (510)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~ 494 (510)
+...+++...++++++||||+|+|++|+.++.+.++.+-..+-+ ..++.|.. |.+++.|++.-|+-+
T Consensus 366 ~~~r~a~edn~ll~~~l~~n~st~kl~~~~~t~~~v~~~~~~a~l~~~~l~~~~~~s~~k~rsle~egs~ 435 (694)
T KOG4443|consen 366 NNLRSAAEDNALLAKKLVINSSSRKLNVISSTSAHVGSASSSAPLSQRKLIGVRAPSMGKVRSLEDEGSR 435 (694)
T ss_pred hhhhhccchhhHHhhhcccccCccccccccccccccccccccChhhHHHhccCcCcchhhhhhhhhhccc
Confidence 58888999999999999999999999999999999888755544 34566777 999999998775544
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.70 E-value=1.6e-18 Score=171.63 Aligned_cols=114 Identities=26% Similarity=0.699 Sum_probs=101.4
Q ss_pred ccccCCCccccccccccccc--cCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCcCcccccCCCCc
Q 010445 25 GEEQGQSNTNVMCRLCFVGE--NEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPN 102 (510)
Q Consensus 25 ~~e~~~~~~~~~C~vC~~~G--~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~C~vC~~~gd~~ 102 (510)
..+.+.+.+.++|.+|.+.. |...+-+++||.|..||++-|++||+-...+...+..+.|+|.+|+.|.+|+.+.+++
T Consensus 215 r~kkd~a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsendd 294 (336)
T KOG1244|consen 215 RVKKDIAQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDD 294 (336)
T ss_pred hhhcccccCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCc
Confidence 33345677889999999865 4445778999999999999999999998877777778999999999999999999999
Q ss_pred ceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 103 KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 103 ~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
.||||+-|+++||++||.|++...|.+.|.|..|..
T Consensus 295 qllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 295 QLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 999999999999999999999999999999988863
No 3
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.45 E-value=1.6e-14 Score=144.29 Aligned_cols=101 Identities=23% Similarity=0.538 Sum_probs=89.3
Q ss_pred ccccccccccccc-cCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCcCcccccCCCCcceEEcCCC
Q 010445 32 NTNVMCRLCFVGE-NEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRC 110 (510)
Q Consensus 32 ~~~~~C~vC~~~G-~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~C~vC~~~gd~~~lL~Cd~C 110 (510)
.+...|.+|..+. +.-....+.||.|..|-..||++|+.++......+..+.|.|.+|++|.+|+.+..++.+|+|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~C 335 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVC 335 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccc
Confidence 4557899999865 333466779999999999999999999877666666789999999999999999999999999999
Q ss_pred CCcccccccCCCCcCCCCCCcccc
Q 010445 111 DAAYHCYCQHPPHKNVSSGPYLCP 134 (510)
Q Consensus 111 ~~~YH~~CL~P~l~~ip~~~W~Cp 134 (510)
+++||.+|++ |..+|.+.|.|.
T Consensus 336 DRG~HT~CVG--L~~lP~G~WICD 357 (381)
T KOG1512|consen 336 DRGPHTLCVG--LQDLPRGEWICD 357 (381)
T ss_pred cCCCCccccc--cccccCccchhh
Confidence 9999999999 788999999997
No 4
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=99.25 E-value=1.1e-12 Score=143.78 Aligned_cols=249 Identities=20% Similarity=0.302 Sum_probs=154.3
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC-----cCcccccCCCCcceEEc
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-----ICEICRRTGDPNKFMFC 107 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~-----~C~vC~~~gd~~~lL~C 107 (510)
++.+|.+|.... +++.++||+|+.|+-..|..|+++-..+ .+.|.|..|. -|..|=..|.. |--=
T Consensus 270 edviCDvCrspD---~e~~neMVfCd~Cn~cVHqaCyGIle~p-----~gpWlCr~Calg~~ppCvLCPkkGGa--mK~~ 339 (893)
T KOG0954|consen 270 EDVICDVCRSPD---SEEANEMVFCDKCNICVHQACYGILEVP-----EGPWLCRTCALGIEPPCVLCPKKGGA--MKPT 339 (893)
T ss_pred ccceeceecCCC---ccccceeEEeccchhHHHHhhhceeecC-----CCCeeehhccccCCCCeeeccccCCc--cccc
Confidence 667999999864 3567799999999999999999985433 3899999996 67777544321 1111
Q ss_pred CCCCCcccccccCCCCcCCCCCCccccCCcccccCCCCCCCCCCccccccCccccccccccccccccccccccccCCCCC
Q 010445 108 RRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES 187 (510)
Q Consensus 108 d~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~~lC~~C~~~~~kg~~CpVC~r~Y~d~e~ 187 (510)
..=-.|-|..|.-= ++.+ .+-|+.=. -..+....+...||..- |.-| .. -.
T Consensus 340 ~sgT~wAHvsCALw-IPEV---sie~~ekm----ePItkfs~IpesRwslv---C~LC-------------k~-----k~ 390 (893)
T KOG0954|consen 340 KSGTKWAHVSCALW-IPEV---SIECPEKM----EPITKFSHIPESRWSLV---CNLC-------------KV-----KS 390 (893)
T ss_pred CCCCeeeEeeeeec-ccee---eccCHhhc----CcccccCCCcHHHHHHH---HHHh-------------cc-----cC
Confidence 11127888888651 1111 11222111 11122334566788752 2222 21 12
Q ss_pred CCceecc--CcCCcccccCCCCchHHHhhhccCCC---CceeCCCCCCCCCCCcchHHHHHHHhhccccc-c-----HHH
Q 010445 188 TPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDGN---LQYRCPTCRGECYQVRDLEDAVRELWRRKDMA-D-----KDL 256 (510)
Q Consensus 188 ~~mLqCd--~C~~wfH~~Cd~l~~e~y~~~~~~~~---~~Y~C~~Cr~~~~~I~~~k~~~~r~Wr~~~~~-~-----~~~ 256 (510)
+--|+|. .|...||..|....--....++...+ ..=+|+.|-.... -+.+. ..-.-|+..+. + .+-
T Consensus 391 GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~v~~~s~c~khs~~~~-~~s~g--~~~e~p~p~~~~p~~~~~e~~ 467 (893)
T KOG0954|consen 391 GACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDEVKFKSYCSKHSDHRE-GKSLG--NEAESPHPRCHLPEQSVGEGH 467 (893)
T ss_pred cceEEecccchhhhccchhhhhcCCeeeeeeccCCchhheeeccccccccc-ccccc--cccCCCCccccChhhhhhhhh
Confidence 2236665 69999999998743211111221111 2345666543221 01111 11112222221 1 233
Q ss_pred HHHHHHhcCCCCccccccCCCCCC-CccCC-chhhhhhhhcccccccCCCCCCCCCchhhhcccccCCC
Q 010445 257 IASLRAAAGLPTEDEIFSISPYSD-DEENG-PVVLKNEFGRSLKLSLKGVVDKSPKKVKEHGKKWLNKK 323 (510)
Q Consensus 257 i~slR~~~glp~~eei~s~~p~sd-d~~~~-~~~~~~~~~~~~~~s~k~~~~k~~~~~~~~~~~~~~~~ 323 (510)
..+.|++.....+.++|.++-++| .+.|. |..+++++|+|||+.+|+++++++.++|+++...-.|+
T Consensus 468 ~~s~r~q~l~~~e~ef~~~v~~~diae~l~~~e~~vs~iynywklkrks~~n~~lippk~d~~~~i~kk 536 (893)
T KOG0954|consen 468 RSSDRAQKLQELEGEFYDIVRNEDIAELLSMPEFAVSAIYNYWKLKRKSRFNKELIPPKSDEVGLIAKK 536 (893)
T ss_pred hhhHHHHHHhhcchhHhhhhhHHHHHHHhcCchHHHHHHHHHHHHhhhccCCCcCCCCcchhccchhhH
Confidence 447888888888999999999999 66666 99999999999999999999999999999998875554
No 5
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.63 E-value=1.8e-08 Score=110.21 Aligned_cols=48 Identities=29% Similarity=0.839 Sum_probs=43.2
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCC--cCCCCCCccccCCcc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPH--KNVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l--~~ip~~~W~Cp~C~~ 138 (510)
+|..|++.+.-..+++|+.|++.||+.||.||+ ..+|.+.|+|+.|..
T Consensus 255 fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 255 FCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 799999988766779999999999999999995 468999999999983
No 6
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.58 E-value=6.3e-08 Score=108.64 Aligned_cols=185 Identities=22% Similarity=0.380 Sum_probs=118.9
Q ss_pred CCCCcchhhhcCCCccccccCCCCCcCCCCCC-------------------cCcccccCCCCcceEEcCCCCCccccccc
Q 010445 59 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR-------------------ICEICRRTGDPNKFMFCRRCDAAYHCYCQ 119 (510)
Q Consensus 59 ~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~-------------------~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL 119 (510)
.|.+.||..|+.+.....+ ...|.|+.|- .|.+|+..+ .++.|+.|+.+||.+|+
T Consensus 1 ~~~r~~~~~~~~p~~~~~~---~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl 74 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEP---EMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADGG---ELLWCDTCPASFHASCL 74 (696)
T ss_pred CCCcccCcCCCCcccccCC---cCCccCcchhhcccccccccCCcchhhhhhhhhhcCCC---cEEEeccccHHHHHHcc
Confidence 4899999999998765433 4799999885 799999888 89999999999999999
Q ss_pred CCCCcCCCCCCccccCCcccccCCCCCCCCCCccccccCc-c-------------cccccccccccccccc---------
Q 010445 120 HPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGY-T-------------CCDACGRLFVKGNYCP--------- 176 (510)
Q Consensus 120 ~P~l~~ip~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~-~-------------lC~~C~~~~~kg~~Cp--------- 176 (510)
++++...|.+.|.|+.| .|.. +.++..++..++|.... . .-..-+++++++..++
T Consensus 75 ~~pl~~~p~~~~~c~Rc-~~p~-~~~k~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e 152 (696)
T KOG0383|consen 75 GPPLTPQPNGEFICPRC-FCPK-NAGKIEKILGWRWKPTPKPREGNQGVISPRRSNGIVEREFFVKWQGLSYWHCSWKSE 152 (696)
T ss_pred CCCCCcCCccceeeeee-ccCC-CcccccccceeEecCCCCccccCcCccCCcccccchhhhcccccccCCccchhHHHH
Confidence 99999999888999988 4432 22233445566664311 1 1122344555554321
Q ss_pred -----------ccccccCCC------------CCCCceeccCcCCcccccCCCCc-----hHHHhhhc---------cCC
Q 010445 177 -----------VCLKVYRDS------------ESTPMVCCDVCQRWVHCQCDGIS-----DEKYLQFQ---------VDG 219 (510)
Q Consensus 177 -----------VC~r~Y~d~------------e~~~mLqCd~C~~wfH~~Cd~l~-----~e~y~~~~---------~~~ 219 (510)
++...+.+. .++..++|+.|+..||.-|.... ........ ...
T Consensus 153 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k 232 (696)
T KOG0383|consen 153 LLLQNPLNTLPVELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKGATDYLVKWK 232 (696)
T ss_pred HHhhhhcccchHhhhhhhhcccCccccccccccCccccccccchhhhhheeccccccccchhhhhhcccccceeeEeeec
Confidence 111111111 24567778888888888887731 00000000 012
Q ss_pred CCceeCCCCCCCCCCCcchHHHHHHHhhcccc
Q 010445 220 NLQYRCPTCRGECYQVRDLEDAVRELWRRKDM 251 (510)
Q Consensus 220 ~~~Y~C~~Cr~~~~~I~~~k~~~~r~Wr~~~~ 251 (510)
.+.|.=.++..+...|+.+....+++|-.+..
T Consensus 233 ~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~ 264 (696)
T KOG0383|consen 233 ELSYDEQEWEVEDPDIPGYSSAGQEAWHHREK 264 (696)
T ss_pred cCCccccCCCcCCCCcccCcccccccccccCc
Confidence 34555556666666677777788888876655
No 7
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.47 E-value=3.1e-08 Score=75.24 Aligned_cols=48 Identities=31% Similarity=0.863 Sum_probs=40.8
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCc--CCCCCCccccCCcc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK--NVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~--~ip~~~W~Cp~C~~ 138 (510)
+|.+|++..+...||+|+.|+++||..|++++.. ..+...|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4788888777789999999999999999999876 33455999999875
No 8
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.41 E-value=2.3e-07 Score=99.55 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=80.7
Q ss_pred cCcccccC--CCCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCcccccCCCCCCC----CCCccccccCcccccc
Q 010445 91 ICEICRRT--GDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPG----NGLSVRWFLGYTCCDA 164 (510)
Q Consensus 91 ~C~vC~~~--gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~C~~Cg~~~pg----k~~s~rW~~~~~lC~~ 164 (510)
.|-+|... ..++.++.|.+|..+||..|.-|.... .+.|.+..|+. -.....+ ++...+-...|..=..
T Consensus 85 ~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~--~~~~~~~~c~~---~~~~~~g~a~K~g~~a~~~l~y~~~~l 159 (464)
T KOG4323|consen 85 NPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPS--LDIGESTECVF---PIFSQEGGALKKGRLARPSLPYPEASL 159 (464)
T ss_pred CCcccccccccCchhhhhhhhhccCcccccCccCcCc--CCccccccccc---cccccccccccccccccccccCccccc
Confidence 44455432 234578999999999999999875543 34566666554 1111111 1111110111111011
Q ss_pred ccc--cccccccccccccccCCCCCCCceeccCcCCcccccCCCCc--hHHHhhhccCCCCceeCCCCCCCCCC
Q 010445 165 CGR--LFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGIS--DEKYLQFQVDGNLQYRCPTCRGECYQ 234 (510)
Q Consensus 165 C~~--~~~kg~~CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l~--~e~y~~~~~~~~~~Y~C~~Cr~~~~~ 234 (510)
-+. .++.- -|-||++.-...++ .||+|+.|.+|||..|.... ++++ .++++.|+|.+|.++...
T Consensus 160 ~wD~~~~~n~-qc~vC~~g~~~~~N-rmlqC~~C~~~fHq~Chqp~i~~~l~----~D~~~~w~C~~C~~~~~~ 227 (464)
T KOG4323|consen 160 DWDSGHKVNL-QCSVCYCGGPGAGN-RMLQCDKCRQWYHQACHQPLIKDELA----GDPFYEWFCDVCNRGPKK 227 (464)
T ss_pred ccCccccccc-eeeeeecCCcCccc-eeeeecccccHHHHHhccCCCCHhhc----cCccceEeehhhccchhh
Confidence 101 11112 28899988777767 99999999999999999843 3332 457899999999987544
No 9
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.40 E-value=1e-07 Score=106.03 Aligned_cols=48 Identities=23% Similarity=0.740 Sum_probs=45.4
Q ss_pred cCcccccCCCCcceEEcCCCCCc-ccccccCCCCcCCCCCCccccCCcc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAA-YHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~-YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
-|.+|.....++.||+|+.|+.+ ||++||+|++..+|-+.|||++|.-
T Consensus 217 ~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 217 KCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 69999999988899999999998 9999999999999999999999975
No 10
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.28 E-value=6.9e-07 Score=84.35 Aligned_cols=86 Identities=26% Similarity=0.650 Sum_probs=64.5
Q ss_pred ccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCC-----CCCcCCCCCC--------------cCcccc
Q 010445 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFH-----WSSWKCPSCR--------------ICEICR 96 (510)
Q Consensus 36 ~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~-----~~~W~C~~C~--------------~C~vC~ 96 (510)
+|.+|...|. +.....||+|.+|-.+||..||++.....-++. ..-.+|..|. .|..|+
T Consensus 1 ~C~~C~~~g~--~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~ 78 (175)
T PF15446_consen 1 TCDTCGYEGD--DRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCK 78 (175)
T ss_pred CcccccCCCC--CccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccC
Confidence 4888875432 234459999999999999999999865433332 2356899997 899998
Q ss_pred cCCC--------------------------------------CcceEEcCCCCCcccccccCCCC
Q 010445 97 RTGD--------------------------------------PNKFMFCRRCDAAYHCYCQHPPH 123 (510)
Q Consensus 97 ~~gd--------------------------------------~~~lL~Cd~C~~~YH~~CL~P~l 123 (510)
..|. ++.|.+|..|.++||+.-|.+..
T Consensus 79 ~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 79 KPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 6643 12589999999999999998753
No 12
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.27 E-value=5.5e-07 Score=98.82 Aligned_cols=51 Identities=24% Similarity=0.703 Sum_probs=41.3
Q ss_pred ccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 34 ~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
+++|..|.+.|. ..++|+|++|+++||+.||.|+..+.. ++.+.|+|++|.
T Consensus 253 ~~fCsaCn~~~~-----F~~~i~CD~Cp~sFH~~CLePPl~~en-iP~g~W~C~ec~ 303 (613)
T KOG4299|consen 253 EDFCSACNGSGL-----FNDIICCDGCPRSFHQTCLEPPLEPEN-IPPGSWFCPECK 303 (613)
T ss_pred HHHHHHhCCccc-----cccceeecCCchHHHHhhcCCCCCccc-CCCCccccCCCe
Confidence 459999998772 246799999999999999999955432 345899999997
No 13
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.20 E-value=8.1e-07 Score=95.47 Aligned_cols=114 Identities=18% Similarity=0.394 Sum_probs=77.6
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC----------------------
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR---------------------- 90 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~---------------------- 90 (510)
.+..|.+|..... ....+++.|..|+.+||..|-.+..... ..|.+.+|.
T Consensus 82 ~e~~~nv~~s~~~---~p~~e~~~~~r~~~~~~q~~~i~~~~~~-----~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~ 153 (464)
T KOG4323|consen 82 SELNPNVLTSETV---LPENEKVICGRCKSGYHQGCNIPRFPSL-----DIGESTECVFPIFSQEGGALKKGRLARPSLP 153 (464)
T ss_pred cccCCcccccccc---cCchhhhhhhhhccCcccccCccCcCcC-----Ccccccccccccccccccccccccccccccc
Confidence 4467888877542 2344789999999999999987753211 334444343
Q ss_pred ----------------cCccc--ccCCCCcceEEcCCCCCcccccccCCCCcC----CCCCCccccCCcccccCCCCCCC
Q 010445 91 ----------------ICEIC--RRTGDPNKFMFCRRCDAAYHCYCQHPPHKN----VSSGPYLCPKHTKCHSCGSNVPG 148 (510)
Q Consensus 91 ----------------~C~vC--~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~----ip~~~W~Cp~C~~C~~Cg~~~pg 148 (510)
.|.+| +.++..++||+|+.|..|||+.|..|+... -+...|+|..|.. ...-.
T Consensus 154 y~~~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~-----~~~~~ 228 (464)
T KOG4323|consen 154 YPEASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR-----GPKKV 228 (464)
T ss_pred CcccccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc-----chhhc
Confidence 45555 456667799999999999999999997753 3677899988875 11112
Q ss_pred CCCccccccCc
Q 010445 149 NGLSVRWFLGY 159 (510)
Q Consensus 149 k~~s~rW~~~~ 159 (510)
.....+|....
T Consensus 229 ~r~t~~~~dv~ 239 (464)
T KOG4323|consen 229 PRLTLRWADVL 239 (464)
T ss_pred ccccccccccc
Confidence 23456776533
No 14
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.15 E-value=6.9e-07 Score=67.86 Aligned_cols=49 Identities=37% Similarity=0.935 Sum_probs=37.7
Q ss_pred cccccccccCCCCCCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCC
Q 010445 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (510)
Q Consensus 174 ~CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr 229 (510)
+|.+|++ ..+...||+|+.|.+|||..|+++........ ...|+|+.|+
T Consensus 1 ~C~vC~~---~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~----~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ---SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIP----SGDWYCPNCR 49 (51)
T ss_dssp EBTTTTS---SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHH----SSSBSSHHHH
T ss_pred eCcCCCC---cCCCCCeEEcCCCChhhCcccCCCChhhccCC----CCcEECcCCc
Confidence 5788887 44567899999999999999999765443221 2289999886
No 15
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.10 E-value=1.2e-06 Score=96.65 Aligned_cols=133 Identities=22% Similarity=0.474 Sum_probs=84.3
Q ss_pred CcccccCC--CCcceEEcC--CCCCcccccccCCCCcCCCCCCccccCCcc--------cccCCCCCCC--CCCcccccc
Q 010445 92 CEICRRTG--DPNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKHTK--------CHSCGSNVPG--NGLSVRWFL 157 (510)
Q Consensus 92 C~vC~~~g--d~~~lL~Cd--~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~--------C~~Cg~~~pg--k~~s~rW~~ 157 (510)
|-||.+-. .++.|+.|| .|..+.|.+|++ +..+|.++|||..|.. |.-|..++-. +..+.-|.+
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 55776433 346899999 799999999999 7889999999999953 7778765421 222344644
Q ss_pred Ccccc---cccccc------------cc---c-cccccccccccCCCC--CCCceecc--CcCCcccccCCCC---chHH
Q 010445 158 GYTCC---DACGRL------------FV---K-GNYCPVCLKVYRDSE--STPMVCCD--VCQRWVHCQCDGI---SDEK 211 (510)
Q Consensus 158 ~~~lC---~~C~~~------------~~---k-g~~CpVC~r~Y~d~e--~~~mLqCd--~C~~wfH~~Cd~l---~~e~ 211 (510)
.+| ...-++ ++ + -..|+||.+.-+++. .+--++|. .|.+.||..|... +-|+
T Consensus 86 --VVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE 163 (900)
T KOG0956|consen 86 --VVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEE 163 (900)
T ss_pred --EEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceec
Confidence 112 011110 00 0 124999988765543 34455675 4999999999873 3222
Q ss_pred HhhhccCCCCceeCCCCCCC
Q 010445 212 YLQFQVDGNLQYRCPTCRGE 231 (510)
Q Consensus 212 y~~~~~~~~~~Y~C~~Cr~~ 231 (510)
- +.--+.+-+|-+|+..
T Consensus 164 ~---gn~~dNVKYCGYCk~H 180 (900)
T KOG0956|consen 164 E---GNISDNVKYCGYCKYH 180 (900)
T ss_pred c---ccccccceechhHHHH
Confidence 1 1112347789999865
No 16
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.89 E-value=4.6e-06 Score=84.41 Aligned_cols=80 Identities=25% Similarity=0.526 Sum_probs=63.3
Q ss_pred CCcceEEcCCCCCcccccccCCCCcC---CCCCCccccCCcccccCCCCCCCCCCccccccCcccccccccccccccccc
Q 010445 100 DPNKFMFCRRCDAAYHCYCQHPPHKN---VSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCP 176 (510)
Q Consensus 100 d~~~lL~Cd~C~~~YH~~CL~P~l~~---ip~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~~lC~~C~~~~~kg~~Cp 176 (510)
..+.|+.|..|...||++|+.-+... +-...|.|..|..|.-|+...
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~------------------------------ 324 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPV------------------------------ 324 (381)
T ss_pred hhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcc------------------------------
Confidence 34579999999999999999955433 456899999999887777421
Q ss_pred ccccccCCCCCCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCC
Q 010445 177 VCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCP 226 (510)
Q Consensus 177 VC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~ 226 (510)
...+|+-||.|++-||.-|+++-+ -+.+.|+|-
T Consensus 325 ---------~E~E~~FCD~CDRG~HT~CVGL~~--------lP~G~WICD 357 (381)
T KOG1512|consen 325 ---------IESEHLFCDVCDRGPHTLCVGLQD--------LPRGEWICD 357 (381)
T ss_pred ---------cchheeccccccCCCCcccccccc--------ccCccchhh
Confidence 134688899999999999999632 367899998
No 18
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.79 E-value=6.6e-06 Score=82.84 Aligned_cols=96 Identities=24% Similarity=0.561 Sum_probs=73.6
Q ss_pred cCccc-------ccCCCCcceEEcCCCCCcccccccCCCCcC---CCCCCccccCCcccccCCCCCCCCCCccccccCcc
Q 010445 91 ICEIC-------RRTGDPNKFMFCRRCDAAYHCYCQHPPHKN---VSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYT 160 (510)
Q Consensus 91 ~C~vC-------~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~---ip~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~~ 160 (510)
+|..| ++++.++.|+.|.-|++.=|+.||+-..-+ +...+|.|-.|..|.-||+...
T Consensus 226 YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsen------------- 292 (336)
T KOG1244|consen 226 YCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSEN------------- 292 (336)
T ss_pred ccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCC-------------
Confidence 56666 345567789999999999999999943222 4568999999998888875421
Q ss_pred ccccccccccccccccccccccCCCCCCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCCCC
Q 010445 161 CCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (510)
Q Consensus 161 lC~~C~~~~~kg~~CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~~ 231 (510)
..+||-||.|++-||.-|+.+.. ..++++.|.|-.|...
T Consensus 293 --------------------------ddqllfcddcdrgyhmyclsppm------~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 293 --------------------------DDQLLFCDDCDRGYHMYCLSPPM------VEPPEGSWSCHLCLEE 331 (336)
T ss_pred --------------------------CceeEeecccCCceeeEecCCCc------CCCCCCchhHHHHHHH
Confidence 24688899999999999998532 3568899999998653
No 19
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.72 E-value=8.9e-06 Score=89.90 Aligned_cols=87 Identities=25% Similarity=0.634 Sum_probs=60.5
Q ss_pred CcCCCCCCcCcccccCCC--CcceEEcCCCCCcccccccCCCCcCC-CCCCccccCCcccccCCCCCCCCCCccccccCc
Q 010445 83 SWKCPSCRICEICRRTGD--PNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGY 159 (510)
Q Consensus 83 ~W~C~~C~~C~vC~~~gd--~~~lL~Cd~C~~~YH~~CL~P~l~~i-p~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~ 159 (510)
.=.|.-|.+|.+|...|. +..|+.|..|...||.+|+..-+... -.+.|+||.|+.|..|++... | ..+
T Consensus 12 ~~~~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD-------~-~kf 83 (694)
T KOG4443|consen 12 DKAIIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGD-------P-KKF 83 (694)
T ss_pred chhhhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCC-------c-ccc
Confidence 445666889999987654 45799999999999999998432221 134599999999999995432 1 135
Q ss_pred ccccccccccccccccccccccc
Q 010445 160 TCCDACGRLFVKGNYCPVCLKVY 182 (510)
Q Consensus 160 ~lC~~C~~~~~kg~~CpVC~r~Y 182 (510)
.+|..|-.. |...|.+.-
T Consensus 84 ~~Ck~cDvs-----yh~yc~~P~ 101 (694)
T KOG4443|consen 84 LLCKRCDVS-----YHCYCQKPP 101 (694)
T ss_pred ccccccccc-----ccccccCCc
Confidence 678888644 444455544
No 20
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.71 E-value=1.9e-05 Score=92.33 Aligned_cols=111 Identities=23% Similarity=0.387 Sum_probs=72.7
Q ss_pred cCcccccCCCC--cceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc-------cccCCCCCCCC--CCccccccCc
Q 010445 91 ICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK-------CHSCGSNVPGN--GLSVRWFLGY 159 (510)
Q Consensus 91 ~C~vC~~~gd~--~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~-------C~~Cg~~~pgk--~~s~rW~~~~ 159 (510)
+|.+|....-. +.+|+|+.|+.++|+.|++ .+-+|.+.|.|..|.. |..|..+.... ....||.+..
T Consensus 221 ~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw~Hv~ 298 (1051)
T KOG0955|consen 221 VCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRWAHVV 298 (1051)
T ss_pred cceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCceeeee
Confidence 89999877655 6899999999999999999 5667899999999975 66666543221 1245675421
Q ss_pred ------ccccc--------ccccc---ccc-ccccccccccCCCCCCCceeccC--cCCcccccCCCC
Q 010445 160 ------TCCDA--------CGRLF---VKG-NYCPVCLKVYRDSESTPMVCCDV--CQRWVHCQCDGI 207 (510)
Q Consensus 160 ------~lC~~--------C~~~~---~kg-~~CpVC~r~Y~d~e~~~mLqCd~--C~~wfH~~Cd~l 207 (510)
.+++. ..... ..| -.|.+|..-. -+--+||.. |-.|||..|..-
T Consensus 299 caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~----~gaciqcs~~~c~~a~hvtca~~ 362 (1051)
T KOG0955|consen 299 CAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKG----LGACIQCSKANCYTAFHVTCARR 362 (1051)
T ss_pred hhhcccccccccchhhccccchhcCcHhhhhceeeeeccCC----CCcceecchhhhhhhhhhhhHhh
Confidence 01110 00000 012 2488887532 133567764 899999999873
No 21
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.71 E-value=1.7e-05 Score=92.64 Aligned_cols=79 Identities=25% Similarity=0.710 Sum_probs=64.1
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC----------------------
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR---------------------- 90 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~---------------------- 90 (510)
.+.+|.+|.++.. ...+.+|+|+.|+..+|+.|++.+..+ .+.|.|..|.
T Consensus 218 ~D~~C~iC~~~~~---~n~n~ivfCD~Cnl~VHq~Cygi~~ip-----eg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt 289 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC---QNSNVIVFCDGCNLAVHQECYGIPFIP-----EGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQT 289 (1051)
T ss_pred CCccceeeccccc---CCCceEEEcCCCcchhhhhccCCCCCC-----CCcEeehhhccCcCcccceEeccCCCCcceec
Confidence 3469999999762 233589999999999999999955443 4899999996
Q ss_pred -----------------------------------------cCcccccCCCCcceEEcC--CCCCcccccccC
Q 010445 91 -----------------------------------------ICEICRRTGDPNKFMFCR--RCDAAYHCYCQH 120 (510)
Q Consensus 91 -----------------------------------------~C~vC~~~gd~~~lL~Cd--~C~~~YH~~CL~ 120 (510)
+|.+|+..+ .+.-++|. .|-.+||.+|..
T Consensus 290 ~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~-~gaciqcs~~~c~~a~hvtca~ 361 (1051)
T KOG0955|consen 290 DDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKG-LGACIQCSKANCYTAFHVTCAR 361 (1051)
T ss_pred cCCceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCC-CCcceecchhhhhhhhhhhhHh
Confidence 688998776 44678887 799999999976
No 22
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.59 E-value=2.7e-05 Score=86.33 Aligned_cols=52 Identities=25% Similarity=0.705 Sum_probs=39.2
Q ss_pred ccccccccccCCccCCCCcEEeC--CCCCcchhhhcCCCccccccCCCCCcCCCCCC--------cCccc
Q 010445 36 MCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR--------ICEIC 95 (510)
Q Consensus 36 ~C~vC~~~G~~gs~~~eeLL~C~--~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~--------~C~vC 95 (510)
-|-||.+. .|+.+ ..||+|| .|--+.|..|+++..- +.+.|+|..|. .|..|
T Consensus 7 GCCVCSDE--rGWae-NPLVYCDG~nCsVAVHQaCYGIvqV-----PtGpWfCrKCesqeraarvrCeLC 68 (900)
T KOG0956|consen 7 GCCVCSDE--RGWAE-NPLVYCDGHNCSVAVHQACYGIVQV-----PTGPWFCRKCESQERAARVRCELC 68 (900)
T ss_pred ceeeecCc--CCCcc-CceeeecCCCceeeeehhcceeEec-----CCCchhhhhhhhhhhhccceeecc
Confidence 47788763 23333 3899999 5999999999998543 34899999996 67777
No 23
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.58 E-value=3.5e-05 Score=87.04 Aligned_cols=92 Identities=25% Similarity=0.444 Sum_probs=65.7
Q ss_pred CCCCcccccccCCCCcCCCCCCccccCCcccccCCCCCCCCCCccccccCccccccccccccccccccccccccCCCCCC
Q 010445 109 RCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSEST 188 (510)
Q Consensus 109 ~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~~lC~~C~~~~~kg~~CpVC~r~Y~d~e~~ 188 (510)
.|++.||..|+.|.+...+...|.||.|.. . +.+|...- -.......++|-+|.. ++
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~--~----------~~~~~~~~-----~~~~~~~~e~c~ic~~------~g 57 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCES--S----------SAQVEAKD-----DDWDDAEQEACRICAD------GG 57 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhh--c----------cccccccc-----CCcchhhhhhhhhhcC------CC
Confidence 489999999999988888889999999964 1 11221100 0023445668888985 88
Q ss_pred CceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCC
Q 010445 189 PMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (510)
Q Consensus 189 ~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr 229 (510)
.+|+|++|+.|||..|++..-. ..+...|.|+.|.
T Consensus 58 ~~l~c~tC~~s~h~~cl~~pl~------~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 58 ELLWCDTCPASFHASCLGPPLT------PQPNGEFICPRCF 92 (696)
T ss_pred cEEEeccccHHHHHHccCCCCC------cCCccceeeeeec
Confidence 9999999999999999973210 1134459999984
No 24
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.37 E-value=6.7e-05 Score=80.71 Aligned_cols=50 Identities=22% Similarity=0.515 Sum_probs=41.7
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
-++.|.+|.+..+ +..+-+++|++|.-..|..|.+.+..+ .+.|.|..|.
T Consensus 192 ~d~~C~~c~~t~~---eN~naiVfCdgC~i~VHq~CYGI~f~p-----eG~WlCrkCi 241 (669)
T COG5141 192 FDDICTKCTSTHN---ENSNAIVFCDGCEICVHQSCYGIQFLP-----EGFWLCRKCI 241 (669)
T ss_pred hhhhhHhcccccc---CCcceEEEecCcchhhhhhcccceecC-----cchhhhhhhc
Confidence 5578999998774 345689999999999999999997654 3899999997
No 25
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.33 E-value=6.8e-05 Score=76.43 Aligned_cols=39 Identities=26% Similarity=0.589 Sum_probs=34.0
Q ss_pred cccCCCCcceEEcCC--CC-CcccccccCCCCcCCCCCCccccCCcc
Q 010445 95 CRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 95 C~~~gd~~~lL~Cd~--C~-~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
|...| .|+-|+. |+ .|||..|++ |...|.+.||||.|..
T Consensus 226 qvsyg---~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 226 QVSYG---KMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKA 267 (274)
T ss_pred ccccc---cccccCCCCCCcceEEEeccc--cccCCCCcccchhhhh
Confidence 45555 8999997 99 999999999 7788999999999875
No 26
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.32 E-value=9.9e-05 Score=79.48 Aligned_cols=109 Identities=26% Similarity=0.508 Sum_probs=73.9
Q ss_pred CCcCcccccCCCC--cceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc-------cccCCCCCCC--CCCcccccc
Q 010445 89 CRICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK-------CHSCGSNVPG--NGLSVRWFL 157 (510)
Q Consensus 89 C~~C~vC~~~gd~--~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~-------C~~Cg~~~pg--k~~s~rW~~ 157 (510)
|..|.+|..+..+ +.+++|+.|+.+.|..|.+ +.-+|.|.|.|..|.. |..|...+.. .....||.+
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H 270 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGH 270 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHh
Confidence 4467777766543 4799999999999999999 6678999999999975 7888765432 123467855
Q ss_pred Ccccccc----------------cccccc---cc-ccccccccccCCCCCCCceeccC--cCCcccccCCC
Q 010445 158 GYTCCDA----------------CGRLFV---KG-NYCPVCLKVYRDSESTPMVCCDV--CQRWVHCQCDG 206 (510)
Q Consensus 158 ~~~lC~~----------------C~~~~~---kg-~~CpVC~r~Y~d~e~~~mLqCd~--C~~wfH~~Cd~ 206 (510)
+ .|.. -..+-+ .| .-|.+|.+- +|.-|||.. |-++||..|..
T Consensus 271 ~--iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~-----~GtcIqCs~~nC~~aYHVtCAr 334 (669)
T COG5141 271 V--ICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEF-----GGTCIQCSYFNCTRAYHVTCAR 334 (669)
T ss_pred H--hHHHhcchhccccccccchhhhhcccchhhHhheeeEEccc-----Ccceeeecccchhhhhhhhhhh
Confidence 2 1200 000000 11 128888762 455688875 99999999987
No 27
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.13 E-value=8.3e-05 Score=86.19 Aligned_cols=92 Identities=18% Similarity=0.414 Sum_probs=72.3
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC----------------------
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR---------------------- 90 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~---------------------- 90 (510)
-++.|.+|...+ .+++|.+|++-||..|+.++....+ ...|.|--|.
T Consensus 343 ~ddhcrf~~d~~--------~~lc~Et~prvvhlEcv~hP~~~~~---s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR 411 (1414)
T KOG1473|consen 343 YDDHCRFCHDLG--------DLLCCETCPRVVHLECVFHPRFAVP---SAFWECEVCNIHKVNGVVDCVLPPSKNVDSIR 411 (1414)
T ss_pred ecccccccCccc--------ceeecccCCceEEeeecCCccccCC---CccchhhhhhhhccCcccccccChhhccccee
Confidence 457999999977 8999999999999999999765433 3789888776
Q ss_pred ------------------cCcccccCCCCcceEEcCC-CCCcccc-cccCCCC--cCCCCCCccccCCcc
Q 010445 91 ------------------ICEICRRTGDPNKFMFCRR-CDAAYHC-YCQHPPH--KNVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ------------------~C~vC~~~gd~~~lL~Cd~-C~~~YH~-~CL~P~l--~~ip~~~W~Cp~C~~ 138 (510)
.|.+|.. ++.+|.|.. |+..||. .||+... ..++.+.|.|+.|..
T Consensus 412 ~~~iG~dr~gr~ywfi~rrl~Ie~~---det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~ 478 (1414)
T KOG1473|consen 412 HTPIGRDRYGRKYWFISRRLRIEGM---DETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEII 478 (1414)
T ss_pred ccCCCcCccccchhceeeeeEEecC---CCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHH
Confidence 2444442 337888887 9999998 8999533 246889999999975
No 28
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.96 E-value=0.00043 Score=64.73 Aligned_cols=26 Identities=35% Similarity=0.859 Sum_probs=24.8
Q ss_pred cccccccCCCCcCCCCCCccccCCcc
Q 010445 113 AYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 113 ~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
+||++||.|||..+|.+.|+||.|..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcC
Confidence 59999999999999999999999985
No 29
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.94 E-value=0.00037 Score=75.35 Aligned_cols=80 Identities=23% Similarity=0.512 Sum_probs=50.9
Q ss_pred cccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccc-----cccCCCCCcCCCCCC------cCcccccCCCCcc
Q 010445 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN-----RDLFHWSSWKCPSCR------ICEICRRTGDPNK 103 (510)
Q Consensus 35 ~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~-----~~~~~~~~W~C~~C~------~C~vC~~~gd~~~ 103 (510)
.+|-||.+. .+...+++|.|+.||-..|-.|++..... ...-....|+|.-|+ -|..|-..+.
T Consensus 120 ~iCcVClg~---rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~G--- 193 (707)
T KOG0957|consen 120 VICCVCLGQ---RSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFG--- 193 (707)
T ss_pred eEEEEeecC---ccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCC---
Confidence 389999873 35677799999999999999999876211 111123689998885 3555532221
Q ss_pred eEEcCCCCCcccccccC
Q 010445 104 FMFCRRCDAAYHCYCQH 120 (510)
Q Consensus 104 lL~Cd~C~~~YH~~CL~ 120 (510)
+..=.--++|.|.-|..
T Consensus 194 ifKetDigrWvH~iCAL 210 (707)
T KOG0957|consen 194 IFKETDIGRWVHAICAL 210 (707)
T ss_pred cccccchhhHHHHHHHh
Confidence 11111234777777754
No 30
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.92 E-value=0.00042 Score=78.13 Aligned_cols=50 Identities=32% Similarity=0.787 Sum_probs=41.0
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCc-chhhhcCCCccccccCCCCCcCCCCCC
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKK-YHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~-yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
....|.+|.... ..+-||+|+.|+.. ||.+||+|++-..++ ..|.|++|.
T Consensus 214 E~~~C~IC~~~D-----pEdVLLLCDsCN~~~YH~YCLDPdl~eiP~---~eWYC~NC~ 264 (1134)
T KOG0825|consen 214 EEVKCDICTVHD-----PEDVLLLCDSCNKVYYHVYCLDPDLSESPV---NEWYCTNCS 264 (1134)
T ss_pred ccccceeeccCC-----hHHhheeecccccceeeccccCcccccccc---cceecCcch
Confidence 446899999865 33589999999999 999999998754444 899999996
No 31
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=96.91 E-value=0.0011 Score=62.95 Aligned_cols=33 Identities=27% Similarity=0.891 Sum_probs=25.5
Q ss_pred cCcccccCC---CCcceEEcCCCCCcccccccCCCC
Q 010445 91 ICEICRRTG---DPNKFMFCRRCDAAYHCYCQHPPH 123 (510)
Q Consensus 91 ~C~vC~~~g---d~~~lL~Cd~C~~~YH~~CL~P~l 123 (510)
+|.+|...+ .-..|++|..|..+||..||++..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCcc
Confidence 467775432 334899999999999999999744
No 32
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.76 E-value=0.00045 Score=74.71 Aligned_cols=47 Identities=26% Similarity=0.674 Sum_probs=42.5
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCcCCCC----CCccccCCc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSS----GPYLCPKHT 137 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~----~~W~Cp~C~ 137 (510)
.|.+|++..+.-.++.|+.|...||..||.|||+.+|+ ..|.|..|-
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 79999999988889999999999999999999998875 469999884
No 33
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.71 E-value=0.00083 Score=75.49 Aligned_cols=46 Identities=33% Similarity=0.865 Sum_probs=40.6
Q ss_pred cCcccccCCCC--cceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 91 ICEICRRTGDP--NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ~C~vC~~~gd~--~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
.|.+|+.+..+ +.|++|+.|+...|+.|.+ +..+|.++|.|..|.-
T Consensus 273 iCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Cal 320 (893)
T KOG0954|consen 273 ICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCAL 320 (893)
T ss_pred eeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhccc
Confidence 89999987433 4899999999999999999 7889999999999874
No 34
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.59 E-value=0.00096 Score=67.05 Aligned_cols=44 Identities=25% Similarity=0.718 Sum_probs=35.3
Q ss_pred cCcccccCCCCcceEEcC--CCCC-cccccccCCCCcCCCCCCccccCCcc
Q 010445 91 ICEICRRTGDPNKFMFCR--RCDA-AYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd--~C~~-~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
+| .|.+..- ..|+-|| .|.+ |||..|++ |...|++.|||+.|..
T Consensus 223 YC-fCqqvSy-GqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 223 YC-FCQQVSY-GQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred EE-Eeccccc-ccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 45 5665432 2799999 6876 99999999 7888999999999963
No 35
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.20 E-value=0.001 Score=80.81 Aligned_cols=48 Identities=31% Similarity=0.971 Sum_probs=46.0
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
.|.+|++.++...|+.|+.|..+||.+|+.|.+..+|.+.|+||.|..
T Consensus 1110 ~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1110 LCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred hhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccch
Confidence 799999999888999999999999999999999999999999999985
No 36
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=95.91 E-value=0.0029 Score=64.60 Aligned_cols=34 Identities=26% Similarity=0.857 Sum_probs=29.2
Q ss_pred CcEEeCC--CC-CcchhhhcCCCccccccCCCCCcCCCCCCc
Q 010445 53 RMLSCKS--CG-KKYHRNCLKNWAQNRDLFHWSSWKCPSCRI 91 (510)
Q Consensus 53 eLL~C~~--C~-~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~ 91 (510)
+||-|+. |+ ..||..|+++...| .+.|.|+.|+.
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVGL~~~P-----kgkWyC~~C~~ 267 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVGLKTKP-----KGKWYCPRCKA 267 (274)
T ss_pred cccccCCCCCCcceEEEeccccccCC-----CCcccchhhhh
Confidence 9999996 99 99999999997554 37899999853
No 37
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=95.68 E-value=0.0052 Score=71.91 Aligned_cols=126 Identities=15% Similarity=0.199 Sum_probs=79.1
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCcccccCCCCCCCCCCccccccCccccccccc---
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGR--- 167 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~~lC~~C~~--- 167 (510)
.|.+|.+.+ .++.|..|++.||..|+.+|...+|...|-|-.|..|..=+..+.--.....|.. ..+..=+.
T Consensus 346 hcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~--iR~~~iG~dr~ 420 (1414)
T KOG1473|consen 346 HCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDS--IRHTPIGRDRY 420 (1414)
T ss_pred cccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccc--eeccCCCcCcc
Confidence 688888777 7999999999999999999999999999999999876443321100001111211 11111111
Q ss_pred ---cccccccccccccccCCCCCCCceeccC-cCCcccc-cCCCCchHHHhhhccCCCCceeCCCCCCC
Q 010445 168 ---LFVKGNYCPVCLKVYRDSESTPMVCCDV-CQRWVHC-QCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (510)
Q Consensus 168 ---~~~kg~~CpVC~r~Y~d~e~~~mLqCd~-C~~wfH~-~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~~ 231 (510)
++-...-|.||. .+..+++|.. |++.+|. .|+.-. |....+ .+..|.|+.|.-.
T Consensus 421 gr~ywfi~rrl~Ie~------~det~l~yysT~pqly~ll~cLd~~---~~e~~L-~d~i~~~~ee~~r 479 (1414)
T KOG1473|consen 421 GRKYWFISRRLRIEG------MDETLLWYYSTCPQLYHLLRCLDRT---YVEMYL-CDGIWERREEIIR 479 (1414)
T ss_pred ccchhceeeeeEEec------CCCcEEEEecCcHHHHHHHHHhchH---HHHHhh-ccchhhhHHHHHH
Confidence 111112266665 2456778877 9999998 998732 222222 3567888888654
No 38
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=94.96 E-value=0.018 Score=59.72 Aligned_cols=91 Identities=20% Similarity=0.428 Sum_probs=55.3
Q ss_pred ceEEcCCCCCcccccccCCCCcCCCCCCccccCCcccc---cCCC--CCCCCCCccccccCccccccccccccccccccc
Q 010445 103 KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH---SCGS--NVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPV 177 (510)
Q Consensus 103 ~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~C~---~Cg~--~~pgk~~s~rW~~~~~lC~~C~~~~~kg~~CpV 177 (510)
.+.+|..|.-++|..=...-+ ..++.|+|.-+..+. +|.- .........-|.+++ +|.|| .
T Consensus 67 ~agvC~~C~~~CH~~H~lveL--~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNf-----------qG~~C-~ 132 (345)
T KOG2752|consen 67 MAGVCYACSLSCHDGHELVEL--YTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNF-----------QGLFC-K 132 (345)
T ss_pred hceeEEEeeeeecCCceeeec--cccCCcccccccccccccccccccccccccchhhhhhhh-----------cceeE-E
Confidence 678899999998865443211 235678876443321 1210 011112222344433 45567 5
Q ss_pred cccccCC---CCCCCceeccCcCCccc-ccCCCC
Q 010445 178 CLKVYRD---SESTPMVCCDVCQRWVH-CQCDGI 207 (510)
Q Consensus 178 C~r~Y~d---~e~~~mLqCd~C~~wfH-~~Cd~l 207 (510)
|.+.|.+ ..++.|+||..|+-||| ..|.+.
T Consensus 133 Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~ 166 (345)
T KOG2752|consen 133 CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQA 166 (345)
T ss_pred ecCCCCCccccccceeeeEEeccchhcccccCcc
Confidence 9999977 35789999999999999 777663
No 39
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.19 E-value=0.011 Score=42.76 Aligned_cols=34 Identities=24% Similarity=0.695 Sum_probs=19.0
Q ss_pred CCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCC
Q 010445 52 RRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 89 (510)
Q Consensus 52 eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C 89 (510)
+.||.|+.|.-..|..|.+....+.. ..|.|..|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~----~~W~C~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDG----DDWLCDRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS---------HHH
T ss_pred CceEEeCCCCCcCChhhCCcccCCCC----CcEECCcC
Confidence 38999999999999999998765432 36998766
No 40
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.94 E-value=0.01 Score=42.83 Aligned_cols=33 Identities=33% Similarity=0.822 Sum_probs=18.7
Q ss_pred cceEEcCCCCCcccccccCCCCcCCCCC-CccccCC
Q 010445 102 NKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKH 136 (510)
Q Consensus 102 ~~lL~Cd~C~~~YH~~CL~P~l~~ip~~-~W~Cp~C 136 (510)
+.|++|+.|....|..|.+- ..++.+ .|+|..|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv--~~~~~~~~W~C~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV--SEVPDGDDWLCDRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH
T ss_pred CceEEeCCCCCcCChhhCCc--ccCCCCCcEECCcC
Confidence 47999999999999999993 444444 6999776
No 41
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.67 E-value=0.019 Score=70.02 Aligned_cols=54 Identities=31% Similarity=0.784 Sum_probs=44.1
Q ss_pred CCCccccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 29 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 29 ~~~~~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
..+.....|.+|...+ ..+.|+.|+.|.+.||..|+.+.....+. +.|+|+.|+
T Consensus 1103 ~~s~~~~~c~~cr~k~-----~~~~m~lc~~c~~~~h~~C~rp~~~~~~~---~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKK-----QDEKMLLCDECLSGFHLFCLRPALSSVPP---GDWMCPSCR 1156 (1404)
T ss_pred ccccchhhhhhhhhcc-----cchhhhhhHhhhhhHHHHhhhhhhccCCc---CCccCCccc
Confidence 3445667999999876 24589999999999999999998765443 889999997
No 42
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=93.67 E-value=0.037 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=20.8
Q ss_pred cchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 63 KYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 63 ~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
+||..||+|++...| .+.|.||.|.
T Consensus 1 g~H~~CL~Ppl~~~P---~g~W~Cp~C~ 25 (148)
T cd04718 1 GFHLCCLRPPLKEVP---EGDWICPFCE 25 (148)
T ss_pred CcccccCCCCCCCCC---CCCcCCCCCc
Confidence 599999999987554 4899999983
No 43
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=93.20 E-value=0.068 Score=57.93 Aligned_cols=79 Identities=23% Similarity=0.645 Sum_probs=50.9
Q ss_pred cccccccccccccccccccccccCC-CCCCCceeccCcCCcccccCCCCchHHHhhhcc-------CCCCceeCCCCCCC
Q 010445 160 TCCDACGRLFVKGNYCPVCLKVYRD-SESTPMVCCDVCQRWVHCQCDGISDEKYLQFQV-------DGNLQYRCPTCRGE 231 (510)
Q Consensus 160 ~lC~~C~~~~~kg~~CpVC~r~Y~d-~e~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~-------~~~~~Y~C~~Cr~~ 231 (510)
.+|..| -|.||.+ |++ .++-.||.||.|.+|-|.+|.--. .++..|. .-+..|.|..|-..
T Consensus 124 gFC~~C--------~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr~--~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 124 GFCRRC--------MCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALRH--ELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CccccC--------CccccCC-cccCCCCeeEEeccCCCceehhhhhccc--ccccCCccCCCCCccCceEEEccCCCCh
Confidence 457777 5899988 543 345679999999999999997531 1221121 12569999999876
Q ss_pred CCCCcchHHHHH---HHhhcc
Q 010445 232 CYQVRDLEDAVR---ELWRRK 249 (510)
Q Consensus 232 ~~~I~~~k~~~~---r~Wr~~ 249 (510)
..-+-|++.... ..|+..
T Consensus 193 seLlG~vk~vf~~ca~~~~~d 213 (446)
T PF07227_consen 193 SELLGFVKKVFQTCAKAWRVD 213 (446)
T ss_pred hhHHHHHHHHHHHHHhhhhHH
Confidence 544445554443 336654
No 44
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=92.77 E-value=0.019 Score=61.60 Aligned_cols=138 Identities=20% Similarity=0.305 Sum_probs=69.2
Q ss_pred ccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCc-------cccccCCCCCcCCCCCC-----cCcccccCCCCcc
Q 010445 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA-------QNRDLFHWSSWKCPSCR-----ICEICRRTGDPNK 103 (510)
Q Consensus 36 ~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~-------~~~~~~~~~~W~C~~C~-----~C~vC~~~gd~~~ 103 (510)
+|..|...= ..+-.-|..=++-||..|..=.. +..-. ..+.-.|-.|- .|.+|++...+ .
T Consensus 276 iC~~C~K~V------~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~-v~~k~~CE~cyq~tlekC~~Cg~~I~d-~ 347 (468)
T KOG1701|consen 276 ICAFCHKTV------SGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQ-VDGKPYCEGCYQDTLEKCNKCGEPIMD-R 347 (468)
T ss_pred hhhhcCCcc------cCcchHHHHhhhhhcccceehHhhhhhhccccccc-cCCcccchHHHHHHHHHHhhhhhHHHH-H
Confidence 777777632 11444566666778877654221 11000 12345566663 57777765532 3
Q ss_pred eEEcCCCCCcccccccCCCCcCCCCCCccccCCcccccCCCCCCCCCCccccccCccccccccccccccc--cccccccc
Q 010445 104 FMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGN--YCPVCLKV 181 (510)
Q Consensus 104 lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~~lC~~C~~~~~kg~--~CpVC~r~ 181 (510)
|| ..|+++||..|.. |+.|.-|....+- . --..+...|..+. ++.- -|.+|.+.
T Consensus 348 iL--rA~GkayHp~CF~---------------Cv~C~r~ldgipF---t-vd~~n~v~Cv~df---h~kfAPrCs~C~~P 403 (468)
T KOG1701|consen 348 IL--RALGKAYHPGCFT---------------CVVCARCLDGIPF---T-VDSQNNVYCVPDF---HKKFAPRCSVCGNP 403 (468)
T ss_pred HH--HhcccccCCCceE---------------EEEeccccCCccc---c-ccCCCceeeehhh---hhhcCcchhhccCC
Confidence 33 4789999976654 4444444432210 0 0112345565553 3332 38888876
Q ss_pred cCCCCCCC-ceeccCcCCcccccCC
Q 010445 182 YRDSESTP-MVCCDVCQRWVHCQCD 205 (510)
Q Consensus 182 Y~d~e~~~-mLqCd~C~~wfH~~Cd 205 (510)
....++.+ .|.=..=++-||.+|-
T Consensus 404 I~P~~G~~etvRvvamdr~fHv~CY 428 (468)
T KOG1701|consen 404 ILPRDGKDETVRVVAMDRDFHVNCY 428 (468)
T ss_pred ccCCCCCcceEEEEEccccccccce
Confidence 65444332 2222223566666653
No 45
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=91.14 E-value=0.16 Score=51.49 Aligned_cols=33 Identities=27% Similarity=0.876 Sum_probs=28.3
Q ss_pred CcEEeC--CCC-CcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 53 RMLSCK--SCG-KKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 53 eLL~C~--~C~-~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
+||-|+ .|. ..||..|+++...| .+.|.|++|+
T Consensus 233 qMVaCDn~nCkrEWFH~~CVGLk~pP-----KG~WYC~eCk 268 (271)
T COG5034 233 QMVACDNANCKREWFHLECVGLKEPP-----KGKWYCPECK 268 (271)
T ss_pred cceecCCCCCchhheeccccccCCCC-----CCcEeCHHhH
Confidence 999999 587 79999999997553 4899999985
No 46
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=87.54 E-value=0.48 Score=41.37 Aligned_cols=72 Identities=26% Similarity=0.460 Sum_probs=47.1
Q ss_pred ccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCcccc-------c-----cCCCCCcCCCCCCcCcccccCCCCcc
Q 010445 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNR-------D-----LFHWSSWKCPSCRICEICRRTGDPNK 103 (510)
Q Consensus 36 ~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~-------~-----~~~~~~W~C~~C~~C~vC~~~gd~~~ 103 (510)
.|.+|...| ..+.-..-++..|..|.-...... . .+....|. ..|.+|++.. ..
T Consensus 2 ~C~lC~~~~--------Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~----~~C~iC~~~~--G~ 67 (110)
T PF13832_consen 2 SCVLCPKRG--------GALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFK----LKCSICGKSG--GA 67 (110)
T ss_pred ccEeCCCCC--------CcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcC----CcCcCCCCCC--ce
Confidence 588898765 334444468899999987643210 0 01112222 3788888763 26
Q ss_pred eEEcCC--CCCcccccccCC
Q 010445 104 FMFCRR--CDAAYHCYCQHP 121 (510)
Q Consensus 104 lL~Cd~--C~~~YH~~CL~P 121 (510)
.+.|.. |..+||+.|...
T Consensus 68 ~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 68 CIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred eEEcCCCCCCcCCCHHHHHH
Confidence 899998 999999999874
No 47
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.36 E-value=0.43 Score=37.72 Aligned_cols=36 Identities=25% Similarity=0.679 Sum_probs=28.5
Q ss_pred ccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCc
Q 010445 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA 73 (510)
Q Consensus 34 ~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~ 73 (510)
...|.+|+..-. ..+++|.|..|+..||+.|.....
T Consensus 5 ~~~C~~Cg~~~~----~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 5 GCKCPVCGKKFK----DGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred CccChhhCCccc----CCCCEEECCCCCCcccHHHHhhCC
Confidence 458999987541 235999999999999999997643
No 48
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=86.36 E-value=0.22 Score=42.74 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=32.9
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
.|..|+.+|++-.++.+. |...||+.|+..-+.... ..=.||.|+.
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~~-~~~~CPmCR~ 79 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQS-SKGQCPMCRQ 79 (85)
T ss_pred CCCCccCCCCCCceeecc-CccHHHHHHHHHHHcccc-CCCCCCCcCC
Confidence 566788888776777665 999999999986444322 2337888864
No 49
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=84.54 E-value=0.16 Score=37.40 Aligned_cols=43 Identities=33% Similarity=0.787 Sum_probs=28.5
Q ss_pred cccccccccCCCCCCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCC
Q 010445 174 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (510)
Q Consensus 174 ~CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr 229 (510)
-|+||...+.+. ..++... |.+.||.+|+.. |.+. .+.||.||
T Consensus 2 ~C~IC~~~~~~~--~~~~~l~-C~H~fh~~Ci~~----~~~~------~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDG--EKVVKLP-CGHVFHRSCIKE----WLKR------NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTT--SCEEEET-TSEEEEHHHHHH----HHHH------SSB-TTTH
T ss_pred CCcCCChhhcCC--CeEEEcc-CCCeeCHHHHHH----HHHh------CCcCCccC
Confidence 488999888653 2344454 999999999662 2221 34999996
No 50
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=82.54 E-value=0.21 Score=36.77 Aligned_cols=44 Identities=30% Similarity=0.928 Sum_probs=28.9
Q ss_pred cccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 35 ~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
+.|.+|...-.. .+.++... |+..||..|+..+... ...||.|+
T Consensus 1 d~C~IC~~~~~~----~~~~~~l~-C~H~fh~~Ci~~~~~~-------~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED----GEKVVKLP-CGHVFHRSCIKEWLKR-------NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT----TSCEEEET-TSEEEEHHHHHHHHHH-------SSB-TTTH
T ss_pred CCCcCCChhhcC----CCeEEEcc-CCCeeCHHHHHHHHHh-------CCcCCccC
Confidence 368899886421 23555555 9999999999987653 23677663
No 51
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=80.60 E-value=0.96 Score=44.33 Aligned_cols=45 Identities=31% Similarity=0.855 Sum_probs=34.2
Q ss_pred CCCCCC----cCcccccCC-----CCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 85 KCPSCR----ICEICRRTG-----DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 85 ~C~~C~----~C~vC~~~g-----d~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
.|..|+ +|.+|.... +.+....|..|...||..|... -.||.|.+
T Consensus 144 ~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 144 SCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred HhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 577776 889998653 2347899999999999999983 12887764
No 52
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=79.18 E-value=0.47 Score=38.96 Aligned_cols=54 Identities=30% Similarity=0.688 Sum_probs=21.1
Q ss_pred cccccccccccCCccCCCCcEEeC--CCCCcchhhhcCCCcccccc----CCCCCcCCCCCC
Q 010445 35 VMCRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDL----FHWSSWKCPSCR 90 (510)
Q Consensus 35 ~~C~vC~~~G~~gs~~~eeLL~C~--~C~~~yH~~CL~~~~~~~~~----~~~~~W~C~~C~ 90 (510)
..|.+|.+.-.. ......+.|. .|+..||..||.-+....+. +..-.+.||.|.
T Consensus 3 ~~C~IC~~~~~~--~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~ 62 (70)
T PF11793_consen 3 LECGICYSYRLD--DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCS 62 (70)
T ss_dssp -S-SSS--SS-T--T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-
T ss_pred CCCCcCCcEecC--CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCC
Confidence 479999985321 1122458897 89999999999887542211 112345688774
No 53
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.77 E-value=1.4 Score=34.91 Aligned_cols=31 Identities=26% Similarity=0.721 Sum_probs=26.1
Q ss_pred cCcccccCCC-CcceEEcCCCCCcccccccCC
Q 010445 91 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHP 121 (510)
Q Consensus 91 ~C~vC~~~gd-~~~lL~Cd~C~~~YH~~CL~P 121 (510)
.|.+|+..-. .+.+++|..|+.-||..|...
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 6788987764 458999999999999999864
No 54
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=76.01 E-value=1.4 Score=51.20 Aligned_cols=54 Identities=33% Similarity=0.863 Sum_probs=41.6
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
....|.||...-. ....+-.|.+|..-||..|+.-|...........|.||.|+
T Consensus 190 ~~yeCmIC~e~I~----~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIK----RTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeecc----ccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 4468999987542 34589999999999999999988654332223689999998
No 55
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.00 E-value=2 Score=46.86 Aligned_cols=82 Identities=21% Similarity=0.593 Sum_probs=49.7
Q ss_pred ccccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCcCcccccCCCCcceEEcCCCC
Q 010445 32 NTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCD 111 (510)
Q Consensus 32 ~~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~C~vC~~~gd~~~lL~Cd~C~ 111 (510)
..-+.|.||...-+. .-..|.=.-|..+||-.|+..|... .||-|++|+. ++ ......|..|+
T Consensus 173 tELPTCpVCLERMD~----s~~gi~t~~c~Hsfh~~cl~~w~~~---------scpvcR~~q~---p~-~ve~~~c~~c~ 235 (493)
T KOG0804|consen 173 TELPTCPVCLERMDS----STTGILTILCNHSFHCSCLMKWWDS---------SCPVCRYCQS---PS-VVESSLCLACG 235 (493)
T ss_pred ccCCCcchhHhhcCc----cccceeeeecccccchHHHhhcccC---------cChhhhhhcC---cc-hhhhhhhhhhc
Confidence 356899999986532 1245666789999999999987543 4555554443 32 11334455554
Q ss_pred CcccccccCCCCcCCCCCCccccCCcccccCCCC
Q 010445 112 AAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSN 145 (510)
Q Consensus 112 ~~YH~~CL~P~l~~ip~~~W~Cp~C~~C~~Cg~~ 145 (510)
..+ .-|.|--|-. ..||.-
T Consensus 236 ~~~--------------~LwicliCg~-vgcgrY 254 (493)
T KOG0804|consen 236 CTE--------------DLWICLICGN-VGCGRY 254 (493)
T ss_pred ccc--------------cEEEEEEccc-eecccc
Confidence 332 3477776664 456643
No 56
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=74.36 E-value=2.1 Score=46.46 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=31.5
Q ss_pred CCCCcchhhhcCCC-------ccccccCCCCCcCCCCCC------cCcccccCCCC----cceEEcCCCCCcccccccC
Q 010445 59 SCGKKYHRNCLKNW-------AQNRDLFHWSSWKCPSCR------ICEICRRTGDP----NKFMFCRRCDAAYHCYCQH 120 (510)
Q Consensus 59 ~C~~~yH~~CL~~~-------~~~~~~~~~~~W~C~~C~------~C~vC~~~gd~----~~lL~Cd~C~~~YH~~CL~ 120 (510)
.||++||+.|..=. ..+...-....-.|..|- .|.+|..+.-+ +..++-..=++.||+.|..
T Consensus 351 A~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv~CY~ 429 (468)
T KOG1701|consen 351 ALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAMDRDFHVNCYK 429 (468)
T ss_pred hcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCCcceEEEEEcccccccccee
Confidence 35677887665321 111111112344555543 67777765432 1345555557777777765
No 57
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=74.14 E-value=2.5 Score=46.27 Aligned_cols=39 Identities=26% Similarity=0.617 Sum_probs=31.0
Q ss_pred CCcCCCCCCcCcccccCCC---CcceEEcCCCCCcccccccCC
Q 010445 82 SSWKCPSCRICEICRRTGD---PNKFMFCRRCDAAYHCYCQHP 121 (510)
Q Consensus 82 ~~W~C~~C~~C~vC~~~gd---~~~lL~Cd~C~~~YH~~CL~P 121 (510)
.+=+|..| .|.+|.+... +..++.|+.|+.|-|..|.-.
T Consensus 122 ~~gFC~~C-~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 122 EPGFCRRC-MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred CCCccccC-CccccCCcccCCCCeeEEeccCCCceehhhhhcc
Confidence 34579999 8999987543 336899999999999999653
No 58
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=73.61 E-value=2.6 Score=49.94 Aligned_cols=47 Identities=36% Similarity=0.986 Sum_probs=42.0
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
.|..|.+...+ .++.|+.|...||.+|..++++.++.+.|.|+.|..
T Consensus 157 ~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (904)
T KOG1246|consen 157 QCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIP 203 (904)
T ss_pred hhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccc
Confidence 67888887777 555999999999999999999999999999999985
No 59
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=73.21 E-value=2.7 Score=31.87 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=26.8
Q ss_pred cccccccccccccCCCCCCCceeccCcCCcccccCCCC
Q 010445 170 VKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 207 (510)
Q Consensus 170 ~kg~~CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l 207 (510)
....+|.+|.+.... ....-+.|..|...+|..|...
T Consensus 9 ~~~~~C~~C~~~i~g-~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWG-LGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECS-SSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCC-CCCCeEEECCCCChHhhhhhhh
Confidence 344578888877633 4566789999999999999885
No 60
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=70.29 E-value=1.8 Score=36.30 Aligned_cols=29 Identities=28% Similarity=0.841 Sum_probs=24.5
Q ss_pred CcCcccccC-CCCcceEEcC--CCCCcccccccCC
Q 010445 90 RICEICRRT-GDPNKFMFCR--RCDAAYHCYCQHP 121 (510)
Q Consensus 90 ~~C~vC~~~-gd~~~lL~Cd--~C~~~YH~~CL~P 121 (510)
..|.+|++. | ..+.|. .|.+.||..|...
T Consensus 37 ~~C~~C~~~~G---a~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKGG---ACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCCC---eEEEEeCCCCCcEEChHHHcc
Confidence 378899988 6 788888 5999999999874
No 61
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=69.60 E-value=2.9 Score=36.46 Aligned_cols=34 Identities=18% Similarity=0.607 Sum_probs=28.1
Q ss_pred ccccccccccccccCCccCCCCcEEeCC--CCCcchhhhcCCC
Q 010445 32 NTNVMCRLCFVGENEGCERARRMLSCKS--CGKKYHRNCLKNW 72 (510)
Q Consensus 32 ~~~~~C~vC~~~G~~gs~~~eeLL~C~~--C~~~yH~~CL~~~ 72 (510)
.....|.+|+..+ ..++.|.. |...||+.|+...
T Consensus 53 ~~~~~C~iC~~~~-------G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 53 RFKLKCSICGKSG-------GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred hcCCcCcCCCCCC-------ceeEEcCCCCCCcCCCHHHHHHC
Confidence 3567999999853 17999986 9999999999764
No 62
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=69.31 E-value=1.5 Score=44.65 Aligned_cols=56 Identities=18% Similarity=0.503 Sum_probs=29.0
Q ss_pred cccccccCCC--CcCC---CCCCccccCCcc------cccCCCCCCC---CCCccccccCcccccccccc
Q 010445 113 AYHCYCQHPP--HKNV---SSGPYLCPKHTK------CHSCGSNVPG---NGLSVRWFLGYTCCDACGRL 168 (510)
Q Consensus 113 ~YH~~CL~P~--l~~i---p~~~W~Cp~C~~------C~~Cg~~~pg---k~~s~rW~~~~~lC~~C~~~ 168 (510)
.||..|..=. |+.. -++..+|+.|-- |-.|.....+ ......|+.....|..|.+-
T Consensus 161 ~yHFkCt~C~keL~sdaRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHveHFvCa~CekP 230 (332)
T KOG2272|consen 161 PYHFKCTTCGKELTSDAREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHVEHFVCAKCEKP 230 (332)
T ss_pred ccceecccccccccchhhhhccceeccccccccCCcccccccCchHHHHHHHhccccchhheeehhcCCc
Confidence 4666675521 2211 256778877743 3333322111 11245688888888777543
No 63
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=69.27 E-value=2.7 Score=35.20 Aligned_cols=36 Identities=17% Similarity=0.635 Sum_probs=29.4
Q ss_pred CCcccccccccccc-ccCCccCCCCcEEeC--CCCCcchhhhcCCCc
Q 010445 30 QSNTNVMCRLCFVG-ENEGCERARRMLSCK--SCGKKYHRNCLKNWA 73 (510)
Q Consensus 30 ~~~~~~~C~vC~~~-G~~gs~~~eeLL~C~--~C~~~yH~~CL~~~~ 73 (510)
.......|.+|... | -.|.|. .|.+.||+.|.....
T Consensus 32 ~~~~~~~C~~C~~~~G--------a~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 32 KRRRKLKCSICKKKGG--------ACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred HHHhCCCCcCCCCCCC--------eEEEEeCCCCCcEEChHHHccCC
Confidence 33455799999987 5 789997 699999999998753
No 64
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=68.50 E-value=4.9 Score=42.76 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=64.8
Q ss_pred ccccCCCCc-ceEEcCCCCCcccccc--cCCCCcCCC-CCCccccCCcccccCCCCCCCCCCccccccCccccccccccc
Q 010445 94 ICRRTGDPN-KFMFCRRCDAAYHCYC--QHPPHKNVS-SGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLF 169 (510)
Q Consensus 94 vC~~~gd~~-~lL~Cd~C~~~YH~~C--L~P~l~~ip-~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~~lC~~C~~~~ 169 (510)
.|-...++. .|+.|+.|-.|||..| ++.+....| ...|+|..|.. .. .......|.
T Consensus 64 ~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~-~~------~~~~~~~~l------------- 123 (345)
T KOG1632|consen 64 KCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKE-AQ------DGMSESDGL------------- 123 (345)
T ss_pred hcccccCchhhhhccccccccccccccccCchhhcCCccccccccccch-hh------hhhhhhccc-------------
Confidence 344444443 7899999999999999 887665544 56899988874 11 011112222
Q ss_pred cccccccccccccCCCC-CCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCCCC
Q 010445 170 VKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (510)
Q Consensus 170 ~kg~~CpVC~r~Y~d~e-~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~~ 231 (510)
+| +|...|.... ....+.+..|..|+|..++......+.. +..+.+..|..+
T Consensus 124 ----~~-~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~t~~~~~~~ 176 (345)
T KOG1632|consen 124 ----SC-VCRQDDSELLSPSFYFGKRGCQFWVKLQKLGRVRLEAEK-----NDDPTVFEVVSG 176 (345)
T ss_pred ----ee-ecccccccccccccccCCccccccccchhhhhhhhhhhh-----cccchhhhcccc
Confidence 11 2333332211 1223678999999999998854333221 235777777665
No 65
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.74 E-value=4.2 Score=43.37 Aligned_cols=48 Identities=27% Similarity=0.777 Sum_probs=34.8
Q ss_pred cccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCcCcccccCC
Q 010445 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG 99 (510)
Q Consensus 35 ~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~C~vC~~~g 99 (510)
+.|.+|.+.-..| +.|.=--|...||..|+++|+.. |. ++|.+|++..
T Consensus 230 ~~CaIClEdY~~G-----dklRiLPC~H~FH~~CIDpWL~~--------~r----~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKG-----DKLRILPCSHKFHVNCIDPWLTQ--------TR----TFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccC-----CeeeEecCCCchhhccchhhHhh--------cC----ccCCCCCCcC
Confidence 6999999876433 44444789999999999999753 21 3677777644
No 66
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=65.29 E-value=3 Score=34.37 Aligned_cols=50 Identities=24% Similarity=0.730 Sum_probs=29.1
Q ss_pred ccccccccccccCCc-----cCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 34 NVMCRLCFVGENEGC-----ERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 34 ~~~C~vC~~~G~~gs-----~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
++.|.+|...-.... ...+-.+.=..|+-.||..||..++.. ...||-|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-------NNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-------SSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-------CCcCCCCC
Confidence 346999987542110 111123333469999999999877653 33677664
No 67
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=63.31 E-value=3.5 Score=33.80 Aligned_cols=54 Identities=24% Similarity=0.557 Sum_probs=19.8
Q ss_pred cccccccccCCCCCCCceecc--CcCCcccccCCCCchHHHhhhccCC-C---CceeCCCCCC
Q 010445 174 YCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDG-N---LQYRCPTCRG 230 (510)
Q Consensus 174 ~CpVC~r~Y~d~e~~~mLqCd--~C~~wfH~~Cd~l~~e~y~~~~~~~-~---~~Y~C~~Cr~ 230 (510)
.|+||+....+....+.+-|+ .|...||..|+.. -|......+ . ..-.||.|+.
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~---wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE---WFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHH---HHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH---HHHHcccCCeeecccccCCcCCCC
Confidence 488888765434444566787 8999999999862 111111111 1 2347999985
No 68
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=60.56 E-value=3.2 Score=28.37 Aligned_cols=29 Identities=31% Similarity=0.693 Sum_probs=12.7
Q ss_pred cCcccccCCCCcceEEcCCCCCccccccc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQ 119 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL 119 (510)
.|.+|+++........|..|+-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58889988876678999999999998874
No 69
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=59.46 E-value=4.7 Score=35.80 Aligned_cols=61 Identities=31% Similarity=0.761 Sum_probs=40.8
Q ss_pred cccccccccccccCCccCCCCcEEe------CCC---CCcchhhhcCCCccc--cccCCCCCcCCCCCC---cCcccccC
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSC------KSC---GKKYHRNCLKNWAQN--RDLFHWSSWKCPSCR---ICEICRRT 98 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C------~~C---~~~yH~~CL~~~~~~--~~~~~~~~W~C~~C~---~C~vC~~~ 98 (510)
....|..|.... .+....| ..| ...|=..||...... ...+....|.||.|+ .|..|++.
T Consensus 6 ~g~~CHqCrqKt------~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk 79 (105)
T PF10497_consen 6 NGKTCHQCRQKT------LDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRK 79 (105)
T ss_pred CCCCchhhcCCC------CCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhcc
Confidence 345788888743 2345566 566 888999998765432 222345789999998 67777654
Q ss_pred C
Q 010445 99 G 99 (510)
Q Consensus 99 g 99 (510)
.
T Consensus 80 ~ 80 (105)
T PF10497_consen 80 R 80 (105)
T ss_pred C
Confidence 3
No 70
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=58.96 E-value=5.4 Score=42.42 Aligned_cols=38 Identities=26% Similarity=0.730 Sum_probs=30.9
Q ss_pred CceeccCcCCcccccC--CCCchHHHhhhccCCCCceeCCCCCCC
Q 010445 189 PMVCCDVCQRWVHCQC--DGISDEKYLQFQVDGNLQYRCPTCRGE 231 (510)
Q Consensus 189 ~mLqCd~C~~wfH~~C--d~l~~e~y~~~~~~~~~~Y~C~~Cr~~ 231 (510)
.|++|+.|..|+|.+| .++..+. +++...|.|..|...
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e-----~p~~~~~~c~~c~~~ 113 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKE-----APKEDPKVCDECKEA 113 (345)
T ss_pred hhhccccccccccccccccCchhhc-----CCccccccccccchh
Confidence 6899999999999999 8865432 456779999999754
No 71
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=54.47 E-value=8.4 Score=40.75 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=32.5
Q ss_pred ccccccccccccCCCCCCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCCC
Q 010445 171 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (510)
Q Consensus 171 kg~~CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~ 230 (510)
+.++|+.|+. ...+..-++|..|...|-.+|+-...+. .-.|+.|..
T Consensus 329 ~~~~Cf~C~~---~~~~~~~y~C~~Ck~~FCldCDv~iHes----------Lh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQG---ELLSSGRYRCESCKNVFCLDCDVFIHES----------LHNCPGCEH 375 (378)
T ss_pred CCcceeeecc---ccCCCCcEEchhccceeeccchHHHHhh----------hhcCCCcCC
Confidence 3456888832 2234556889999999999999853332 358999974
No 72
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=52.69 E-value=8.1 Score=33.33 Aligned_cols=52 Identities=23% Similarity=0.636 Sum_probs=31.0
Q ss_pred ccccccccccccCC------ccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 34 NVMCRLCFVGENEG------CERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 34 ~~~C~vC~~~G~~g------s~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
++.|.+|...-++. -+..-.|+.+. |+..||..|+.-+..... ..=+||-|+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~~----~~~~CPmCR 78 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQS----SKGQCPMCR 78 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHcccc----CCCCCCCcC
Confidence 56787777643211 01222455444 999999999998876421 233666553
No 73
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=51.09 E-value=3.7 Score=46.46 Aligned_cols=47 Identities=28% Similarity=0.742 Sum_probs=32.7
Q ss_pred CCCCCC----cCcccccCCC-----CcceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 85 KCPSCR----ICEICRRTGD-----PNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 85 ~C~~C~----~C~vC~~~gd-----~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
.|..|. +|..|....- ......|..|..+||..|+.-... .||.|.+
T Consensus 503 ~C~lC~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s~-------~CPrC~R 558 (580)
T KOG1829|consen 503 ECDLCTGKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRKSP-------CCPRCER 558 (580)
T ss_pred hchhhccCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhccCC-------CCCchHH
Confidence 377776 7888843322 225689999999999999984221 2888875
No 74
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=50.93 E-value=6.8 Score=27.22 Aligned_cols=41 Identities=29% Similarity=0.879 Sum_probs=26.8
Q ss_pred cccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 37 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 37 C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
|.+|...- ...+.-..|+..||..|+..+... ....||.|+
T Consensus 2 C~iC~~~~-------~~~~~~~~C~H~~c~~C~~~~~~~------~~~~Cp~C~ 42 (45)
T cd00162 2 CPICLEEF-------REPVVLLPCGHVFCRSCIDKWLKS------GKNTCPLCR 42 (45)
T ss_pred CCcCchhh-------hCceEecCCCChhcHHHHHHHHHh------CcCCCCCCC
Confidence 67776643 134455569999999999875432 345677664
No 75
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=50.75 E-value=5.6 Score=43.94 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=52.4
Q ss_pred ccccccccccCCCCCCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCCCC----CCCCcchHHHHHHHhhc
Q 010445 173 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE----CYQVRDLEDAVRELWRR 248 (510)
Q Consensus 173 ~~CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~~----~~~I~~~k~~~~r~Wr~ 248 (510)
.+|++|.+ ++.++.|+.+...+|..|.+.-. +.-.|.|.+|+.. ...+.|.+-+.+.||+.
T Consensus 90 ~~c~vc~~------ggs~v~~~s~~~~~~r~c~~~~~---------~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c 154 (463)
T KOG1081|consen 90 SECFVCFK------GGSLVTCKSRIQAPHRKCKPAQL---------EKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPC 154 (463)
T ss_pred chhccccC------CCccceeccccccccccCcCccC---------cccccCCcceeeeccccceeEEeEEcCccccccc
Confidence 46777775 88899999999999999998522 2346677777654 34577888899999998
Q ss_pred cccccHHHH
Q 010445 249 KDMADKDLI 257 (510)
Q Consensus 249 ~~~~~~~~i 257 (510)
..+.+..+.
T Consensus 155 ~vc~~~~~~ 163 (463)
T KOG1081|consen 155 MVCHDPLLP 163 (463)
T ss_pred ceecCcccc
Confidence 777766554
No 76
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=50.61 E-value=9 Score=28.13 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=25.9
Q ss_pred cccccccccccCCCCCCCceeccCcCCcccccCCCC
Q 010445 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 207 (510)
Q Consensus 172 g~~CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l 207 (510)
..+|.+|.+..... ...-+.|..|...+|..|...
T Consensus 11 ~~~C~~C~~~i~~~-~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGL-FKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhcc-ccceeEcCCCCCchhhhhhcc
Confidence 45677787765432 245678999999999999874
No 77
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=49.89 E-value=8.7 Score=27.88 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=25.1
Q ss_pred cccccccccccCCCCCCCceeccCcCCcccccCCCC
Q 010445 172 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 207 (510)
Q Consensus 172 g~~CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l 207 (510)
..+|.+|.+...... +.+.|..|...+|..|...
T Consensus 11 ~~~C~~C~~~i~~~~--~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSF--QGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCC--CCcCCCCCCchHHHHHHhh
Confidence 446778877654321 4688999999999999874
No 78
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.66 E-value=14 Score=41.48 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=39.7
Q ss_pred CccccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCcC
Q 010445 31 SNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRIC 92 (510)
Q Consensus 31 ~~~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~C 92 (510)
..-+..|+-|...| ..|.|..|.+.||..|+.+..+.+.. ...|.|+-|..|
T Consensus 57 ~N~d~~cfechlpg--------~vl~c~vc~Rs~h~~c~sp~~q~r~~--s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 57 SNIDPFCFECHLPG--------AVLKCIVCHRSFHENCQSPDPQKRNY--SVPSDKPQPYSF 108 (588)
T ss_pred cCCCcccccccCCc--------ceeeeehhhccccccccCcchhhccc--cccccCCccccc
Confidence 33456999999977 88999999999999999997664432 357887755433
No 79
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=49.54 E-value=16 Score=35.87 Aligned_cols=37 Identities=16% Similarity=0.564 Sum_probs=26.2
Q ss_pred cccccccccccCCccCCCCcEEeCCCCCcchhhhcCC
Q 010445 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKN 71 (510)
Q Consensus 35 ~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~ 71 (510)
-+|.+|...+.----..+....|..|+.-||..|...
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC
Confidence 4777887654211122347889999999999999984
No 80
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=48.34 E-value=10 Score=41.66 Aligned_cols=40 Identities=30% Similarity=0.603 Sum_probs=31.6
Q ss_pred CCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCCCCCC
Q 010445 187 STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 233 (510)
Q Consensus 187 ~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~~~~ 233 (510)
++-|++|+.|..|-|.-|.+... ......|.|..|+....
T Consensus 98 ~g~~i~c~~c~~Wqh~~C~g~~~-------~~~p~~y~c~~c~~~~~ 137 (508)
T KOG1844|consen 98 EGLMIQCDWCGRWQHKICCGSFK-------STKPDKYVCEICTPRNK 137 (508)
T ss_pred CceeeCCcccCcccCceeeeecC-------CCCchhceeeeeccccc
Confidence 77899999999999999999632 11134799999997644
No 81
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=48.10 E-value=17 Score=40.35 Aligned_cols=59 Identities=19% Similarity=0.467 Sum_probs=33.7
Q ss_pred CCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCcCcccccC-CCCcceE-EcCCCCCcccccc
Q 010445 52 RRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRT-GDPNKFM-FCRRCDAAYHCYC 118 (510)
Q Consensus 52 eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~C~vC~~~-gd~~~lL-~Cd~C~~~YH~~C 118 (510)
+.|.+|..|.+-=...|+.... ..|+|+.|..-.-=... ...+.-. .|..|+...|.--
T Consensus 3 ~~L~fC~~C~~irc~~c~~~Ei--------~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~ 63 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVSEEI--------DSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLS 63 (483)
T ss_pred ccceecccccccCChhhccccc--------ceeECccccccCChhhheeccceeccccccCCCCCCcce
Confidence 4788999998888888887533 45777777432211111 0011222 4666777766543
No 82
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=47.73 E-value=5.8 Score=30.38 Aligned_cols=36 Identities=25% Similarity=0.796 Sum_probs=21.9
Q ss_pred ccccccccccCCccCCCCcE-EeC--CCCCcchhhhcCCCccc
Q 010445 36 MCRLCFVGENEGCERARRML-SCK--SCGKKYHRNCLKNWAQN 75 (510)
Q Consensus 36 ~C~vC~~~G~~gs~~~eeLL-~C~--~C~~~yH~~CL~~~~~~ 75 (510)
+|.+|...+. ..+.|+ .|. +--+.+|..||..+...
T Consensus 1 ~CrIC~~~~~----~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~ 39 (49)
T smart00744 1 ICRICHDEGD----EGDPLVSPCRCKGSLKYVHQECLERWINE 39 (49)
T ss_pred CccCCCCCCC----CCCeeEeccccCCchhHHHHHHHHHHHHH
Confidence 5889987321 112333 232 23378999999998754
No 83
>PHA02929 N1R/p28-like protein; Provisional
Probab=46.38 E-value=12 Score=37.88 Aligned_cols=42 Identities=12% Similarity=0.392 Sum_probs=25.8
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCcc
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~ 74 (510)
.+..|.+|...-.........+..=..|+..||..|+..+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~ 214 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK 214 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh
Confidence 356999999853110000011223347999999999998754
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.41 E-value=22 Score=39.64 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHhcCCCCccccccCC
Q 010445 259 SLRAAAGLPTEDEIFSIS 276 (510)
Q Consensus 259 slR~~~glp~~eei~s~~ 276 (510)
..|...++|+.--+..+.
T Consensus 403 ~~R~~~~~PPf~~l~~i~ 420 (505)
T TIGR00595 403 AQRRALNYPPFTRLIRLI 420 (505)
T ss_pred HHHHHcCCCchhcEEEEE
Confidence 467778888766665543
No 85
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=44.03 E-value=15 Score=36.18 Aligned_cols=38 Identities=18% Similarity=0.561 Sum_probs=26.2
Q ss_pred cCCCccccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCc
Q 010445 28 QGQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA 73 (510)
Q Consensus 28 ~~~~~~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~ 73 (510)
......+..|.+|.+.-. +-+. ..|+..|+..|+..+.
T Consensus 12 ~~~~~~~~~CpICld~~~-------dPVv-T~CGH~FC~~CI~~wl 49 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVR-------DPVV-TLCGHLFCWPCIHKWT 49 (193)
T ss_pred eccCCCccCCccCCCcCC-------CcEE-cCCCchhHHHHHHHHH
Confidence 344445679999997541 2222 5799999999997653
No 86
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=43.79 E-value=6.9 Score=42.09 Aligned_cols=55 Identities=35% Similarity=0.779 Sum_probs=33.2
Q ss_pred Cccccccccccccc----cCCccCCCCcE-EeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCcCcccccC
Q 010445 31 SNTNVMCRLCFVGE----NEGCERARRML-SCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRT 98 (510)
Q Consensus 31 ~~~~~~C~vC~~~G----~~gs~~~eeLL-~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~C~vC~~~ 98 (510)
...+..|.+|-++- ++...+.-++- .=-.||.-+|..||+.|.+.. ++|.+|+++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-------------QTCPICr~p 343 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-------------QTCPICRRP 343 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-------------cCCCcccCc
Confidence 34557999999862 11100000111 111588889999999986532 478888876
No 87
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=43.56 E-value=23 Score=39.22 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=26.9
Q ss_pred CCccccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCc
Q 010445 30 QSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWA 73 (510)
Q Consensus 30 ~~~~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~ 73 (510)
.-...++|++|..+| .++.|+.+.+++|..|.....
T Consensus 85 ~~~~~~~c~vc~~gg--------s~v~~~s~~~~~~r~c~~~~~ 120 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGG--------SLVTCKSRIQAPHRKCKPAQL 120 (463)
T ss_pred cCCCcchhccccCCC--------ccceeccccccccccCcCccC
Confidence 334557999999988 888898777777777776543
No 88
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=42.96 E-value=9.9 Score=28.00 Aligned_cols=43 Identities=23% Similarity=0.675 Sum_probs=28.0
Q ss_pred ccccccccCCCCCCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCCC
Q 010445 175 CPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 230 (510)
Q Consensus 175 CpVC~r~Y~d~e~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~ 230 (510)
|++|.+.|.+.. ..+| -.|.+.|...|+.... .....||.|+.
T Consensus 2 C~~C~~~~~~~~-~~~l--~~CgH~~C~~C~~~~~----------~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEER-RPRL--TSCGHIFCEKCLKKLK----------GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCC-CeEE--cccCCHHHHHHHHhhc----------CCCCCCcCCCC
Confidence 788888883322 2333 3678888888876321 23578999973
No 89
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=42.74 E-value=12 Score=35.83 Aligned_cols=42 Identities=24% Similarity=0.518 Sum_probs=27.9
Q ss_pred CCCccccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCcc
Q 010445 29 GQSNTNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (510)
Q Consensus 29 ~~~~~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~ 74 (510)
+.+..+..|.+|.+++. ....--.|.+--+.-|..||..|..
T Consensus 3 ~~s~~~~~CRIC~~~~~----~~~~PC~CkGs~k~VH~sCL~rWi~ 44 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD----VVTNYCNCKNENKIVHKECLEEWIN 44 (162)
T ss_pred CcCCCCCeeEecCCCCC----CccCCcccCCCchHHHHHHHHHHHh
Confidence 34456679999998652 1113334455567889999998765
No 90
>PRK14873 primosome assembly protein PriA; Provisional
Probab=42.39 E-value=22 Score=41.16 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=12.1
Q ss_pred HHHHhcCCCCccccccC
Q 010445 259 SLRAAAGLPTEDEIFSI 275 (510)
Q Consensus 259 slR~~~glp~~eei~s~ 275 (510)
..|...++|+.--+..+
T Consensus 560 ~~R~~~~~PPf~~la~i 576 (665)
T PRK14873 560 AERAEVGFPPAVRMAAV 576 (665)
T ss_pred HHHHHcCccCceeeEEE
Confidence 46788888877666554
No 91
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=42.33 E-value=24 Score=40.24 Aligned_cols=31 Identities=35% Similarity=0.830 Sum_probs=26.6
Q ss_pred CCcCCCCCC---------cCcccccCCCCcceEEcCCCCCccc
Q 010445 82 SSWKCPSCR---------ICEICRRTGDPNKFMFCRRCDAAYH 115 (510)
Q Consensus 82 ~~W~C~~C~---------~C~vC~~~gd~~~lL~Cd~C~~~YH 115 (510)
..--|+.|+ .|..|+..+ +.+.|+.|+..++
T Consensus 52 ~~~pc~~c~gkG~V~v~~~c~~c~G~g---kv~~c~~cG~~~~ 91 (715)
T COG1107 52 FEIPCPKCRGKGTVTVYDTCPECGGTG---KVLTCDICGDIIV 91 (715)
T ss_pred CCCCCCeeccceeEEEEeecccCCCce---eEEeeccccceec
Confidence 466899997 899999888 8999999998876
No 92
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=41.87 E-value=12 Score=30.34 Aligned_cols=55 Identities=22% Similarity=0.501 Sum_probs=36.7
Q ss_pred cccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCc
Q 010445 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRI 91 (510)
Q Consensus 35 ~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~ 91 (510)
..|.+|....+-|+.++...-.|..|-...-..|-=.+.... .....|.|..|++
T Consensus 3 ~~CPlCkt~~n~gsk~~pNyntCT~Ck~~VCnlCGFNP~Phl--~E~~eWLCLnCQ~ 57 (61)
T PF05715_consen 3 SLCPLCKTTLNVGSKDPPNYNTCTECKSQVCNLCGFNPTPHL--TEVKEWLCLNCQM 57 (61)
T ss_pred ccCCcccchhhcCCCCCCCccHHHHHhhhhhcccCCCCCccc--cccceeeeecchh
Confidence 478888888777777777888888777666555543332211 1236899999863
No 93
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=41.38 E-value=16 Score=30.57 Aligned_cols=41 Identities=29% Similarity=0.630 Sum_probs=23.6
Q ss_pred CCceeccC-cCCcccccCCCCchHHHhhhccCCCCceeCCCCC
Q 010445 188 TPMVCCDV-CQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 229 (510)
Q Consensus 188 ~~mLqCd~-C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr 229 (510)
+-||-|.. =.+|||..|..+++..+.++.. .+..|+|..-.
T Consensus 28 PAMI~cs~~~GHWvhaqCm~LsE~~L~~LSq-~n~KYfC~dH~ 69 (78)
T PF13341_consen 28 PAMIFCSRGGGHWVHAQCMDLSETMLIQLSQ-ENTKYFCNDHV 69 (78)
T ss_dssp --EEEE-STT-EEEETGGGT--HHHHHHHHH-SSS-B--TTTT
T ss_pred ceEEEEeCCCceEeEeecccchHHHHHHHcc-CCceEEEhhhh
Confidence 44666654 5799999999988777766643 45689998754
No 94
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=40.69 E-value=28 Score=39.95 Aligned_cols=81 Identities=22% Similarity=0.489 Sum_probs=51.7
Q ss_pred ccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCcccccc-------------------CCCCCc---CCCCCC-cC
Q 010445 36 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL-------------------FHWSSW---KCPSCR-IC 92 (510)
Q Consensus 36 ~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~-------------------~~~~~W---~C~~C~-~C 92 (510)
+|.+|.-.. .-.-+-|+.|+-.+|..|........+. ..+..| .|..|. +|
T Consensus 46 ~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~c~~c~~~c 119 (634)
T KOG1169|consen 46 VCCVCLWSE------MAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLWKPAYCFVCPKSC 119 (634)
T ss_pred hhhhhhhcc------cccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCCCCceEEeccccc
Confidence 899998732 2257899999999999999876431111 001122 222222 44
Q ss_pred cccccCCCCcceEEcCCCCCcccccccCCCCc
Q 010445 93 EICRRTGDPNKFMFCRRCDAAYHCYCQHPPHK 124 (510)
Q Consensus 93 ~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~ 124 (510)
.+|+.... ..++|+-|++--|..|+....+
T Consensus 120 ~~~~~~~~--~g~~C~~C~~~vh~~C~~~~~~ 149 (634)
T KOG1169|consen 120 GSCGVGIK--QGLCCDWCGRTVHERCVRRADP 149 (634)
T ss_pred cchhhccc--CceeeccccchHHHHHHhhcCc
Confidence 44444332 5799999999999999985443
No 95
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=38.69 E-value=11 Score=25.01 Aligned_cols=30 Identities=23% Similarity=0.851 Sum_probs=20.0
Q ss_pred cccccccccCCccCCCCcEEeCCCCCcchhhhcCCCcc
Q 010445 37 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (510)
Q Consensus 37 C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~ 74 (510)
|.+|.... ..+.-..|+..||..|+.....
T Consensus 1 C~iC~~~~--------~~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEEL--------KDPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCC--------CCcEEecCCChHHHHHHHHHHH
Confidence 55666542 3333446999999999986543
No 96
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=38.64 E-value=19 Score=25.88 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=15.5
Q ss_pred ccccccccCCC-----CCCCceeccCcCCcc
Q 010445 175 CPVCLKVYRDS-----ESTPMVCCDVCQRWV 200 (510)
Q Consensus 175 CpVC~r~Y~d~-----e~~~mLqCd~C~~wf 200 (510)
||-|...|.-+ ..+..++|..|.+-|
T Consensus 5 Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 5 CPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred CCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 66666666322 245567777777655
No 97
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=38.39 E-value=21 Score=39.71 Aligned_cols=31 Identities=23% Similarity=0.582 Sum_probs=22.6
Q ss_pred ceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 103 KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 103 ~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
.|++|..|...-...|+..-+ ..||||.|..
T Consensus 4 ~L~fC~~C~~irc~~c~~~Ei-----~~~yCp~CL~ 34 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEEI-----DSYYCPNCLF 34 (483)
T ss_pred cceecccccccCChhhccccc-----ceeECccccc
Confidence 577888887777777777322 4789999986
No 98
>PHA02862 5L protein; Provisional
Probab=38.38 E-value=14 Score=35.00 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=28.1
Q ss_pred ccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccc
Q 010445 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN 75 (510)
Q Consensus 34 ~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~ 75 (510)
.++|.+|.+.+++ ...--.|.+-.+.-|..||..|...
T Consensus 2 ~diCWIC~~~~~e----~~~PC~C~GS~K~VHq~CL~~WIn~ 39 (156)
T PHA02862 2 SDICWICNDVCDE----RNNFCGCNEEYKVVHIKCMQLWINY 39 (156)
T ss_pred CCEEEEecCcCCC----CcccccccCcchhHHHHHHHHHHhc
Confidence 3689999997632 1244566788899999999987643
No 99
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=38.33 E-value=7.7 Score=44.31 Aligned_cols=102 Identities=21% Similarity=0.319 Sum_probs=53.6
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCccccc-CCCCCCCCCCccccccCccccccccccc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHS-CGSNVPGNGLSVRWFLGYTCCDACGRLF 169 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~C~~-Cg~~~pgk~~s~rW~~~~~lC~~C~~~~ 169 (510)
+|.+|.. .....-+.|+.|+..+|..|..+.....+ +..+.. +... ....-.+-|.... +
T Consensus 46 ~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~s~~~--------~~~~~~~~~~~-~k~~~~~~~~~~~---------~ 106 (634)
T KOG1169|consen 46 VCCVCLW-SEMAPSVDCDVDGGVSHEECVSGAASDCP--------LLVLLGFENQR-HKTDGDHVWRPKH---------L 106 (634)
T ss_pred hhhhhhh-cccccccceeccccchhhhhhcccccchH--------HHHHHHhhhhh-hhccCceeccCCC---------C
Confidence 5556665 22235689999999999999986543221 111100 0000 0000112222211 1
Q ss_pred ccccccccccccc--CCCCCCCceeccCcCCcccccCCCCchHH
Q 010445 170 VKGNYCPVCLKVY--RDSESTPMVCCDVCQRWVHCQCDGISDEK 211 (510)
Q Consensus 170 ~kg~~CpVC~r~Y--~d~e~~~mLqCd~C~~wfH~~Cd~l~~e~ 211 (510)
-+.-||.+|.+.. ......+.++|+-|.+-+|..|....+++
T Consensus 107 ~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~ 150 (634)
T KOG1169|consen 107 WKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPE 150 (634)
T ss_pred CCCceEEeccccccchhhcccCceeeccccchHHHHHHhhcCcc
Confidence 1122344443332 11123678999999999999999855444
No 100
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=38.11 E-value=6.8 Score=29.28 Aligned_cols=41 Identities=24% Similarity=0.544 Sum_probs=19.8
Q ss_pred CcccccCCCCcceEEcC--CCCCcccccccCCCCcCCCCCCccccCC
Q 010445 92 CEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKH 136 (510)
Q Consensus 92 C~vC~~~gd~~~lL~Cd--~C~~~YH~~CL~P~l~~ip~~~W~Cp~C 136 (510)
|.+|++..- .-+.|. .|+..+|..|+.......... .||.|
T Consensus 1 C~~C~~iv~--~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT--QGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-S--SSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHe--eeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 456665432 336788 699999999998655444322 78776
No 101
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=38.08 E-value=20 Score=41.67 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=28.9
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCccc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKC 139 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~C 139 (510)
-|.+|+-+-++ --+.|..|..-| +.|+..+-+....--|.||.|.-|
T Consensus 1119 dc~~cg~~i~~-~~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH~ 1165 (1189)
T KOG2041|consen 1119 DCSVCGAKIDP-YDLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKHR 1165 (1189)
T ss_pred eeeecCCcCCc-cCCCChhhcCcC-ceeeccCCccccceEEEccccccc
Confidence 56777766554 346777776655 567664333222347999988754
No 102
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=36.34 E-value=27 Score=36.22 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=7.6
Q ss_pred CCCceeccCcCCcc
Q 010445 187 STPMVCCDVCQRWV 200 (510)
Q Consensus 187 ~~~mLqCd~C~~wf 200 (510)
|.+-+.|..|.++|
T Consensus 212 GEKPF~C~hC~kAF 225 (279)
T KOG2462|consen 212 GEKPFSCPHCGKAF 225 (279)
T ss_pred CCCCccCCcccchh
Confidence 44455566665555
No 103
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=35.21 E-value=16 Score=27.67 Aligned_cols=13 Identities=38% Similarity=0.999 Sum_probs=8.4
Q ss_pred cCCcccccCCCCC
Q 010445 134 PKHTKCHSCGSNV 146 (510)
Q Consensus 134 p~C~~C~~Cg~~~ 146 (510)
+.|..|..|+...
T Consensus 24 ~~Cf~C~~C~~~l 36 (58)
T PF00412_consen 24 PECFKCSKCGKPL 36 (58)
T ss_dssp TTTSBETTTTCBT
T ss_pred ccccccCCCCCcc
Confidence 5566677787654
No 104
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=35.00 E-value=26 Score=22.80 Aligned_cols=9 Identities=44% Similarity=1.767 Sum_probs=6.7
Q ss_pred CCcCCCCCC
Q 010445 82 SSWKCPSCR 90 (510)
Q Consensus 82 ~~W~C~~C~ 90 (510)
+.|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 368888884
No 105
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=34.66 E-value=24 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=22.1
Q ss_pred cCcccccCC--CCcceEEcCCCCCcccccccCC
Q 010445 91 ICEICRRTG--DPNKFMFCRRCDAAYHCYCQHP 121 (510)
Q Consensus 91 ~C~vC~~~g--d~~~lL~Cd~C~~~YH~~CL~P 121 (510)
.|.+|++.- ....-+.|..|....|..|+..
T Consensus 13 ~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 13 YCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp B-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 566676543 3336799999999999999984
No 106
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=34.63 E-value=37 Score=38.17 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=28.4
Q ss_pred CCCceeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCCCC
Q 010445 187 STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 231 (510)
Q Consensus 187 ~~~mLqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~~ 231 (510)
....|||.+|-.|||..+...+..---.+.-.-...|.|..|+..
T Consensus 32 ~~~elqcs~clk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~~ 76 (544)
T KOG2626|consen 32 GIVELQCSTCLKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTPS 76 (544)
T ss_pred CceeeEeeecccccccccccccccccccCCcccceeEEeccccCc
Confidence 556799999999999755543211000011112468999999975
No 107
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=33.03 E-value=22 Score=24.17 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=8.6
Q ss_pred CCCccccCCcc
Q 010445 128 SGPYLCPKHTK 138 (510)
Q Consensus 128 ~~~W~Cp~C~~ 138 (510)
.+.|.|+.|..
T Consensus 2 ~g~W~C~~C~~ 12 (30)
T PF00641_consen 2 EGDWKCPSCTF 12 (30)
T ss_dssp SSSEEETTTTE
T ss_pred CcCccCCCCcC
Confidence 36899998875
No 108
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.03 E-value=22 Score=38.05 Aligned_cols=45 Identities=20% Similarity=0.488 Sum_probs=33.4
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
+|.+|-+.-..+..|+=--|...||..|++|=+..- +=.||-|..
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~ 275 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKR 275 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCC
Confidence 788888766555666668999999999999855422 346888874
No 109
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.72 E-value=29 Score=25.04 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=17.3
Q ss_pred ccccccccCCC-----CCCCceeccCcCCccc
Q 010445 175 CPVCLKVYRDS-----ESTPMVCCDVCQRWVH 201 (510)
Q Consensus 175 CpVC~r~Y~d~-----e~~~mLqCd~C~~wfH 201 (510)
||-|...|.-. ..+.++.|..|..-|+
T Consensus 5 CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 5 CPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred CCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 66777776322 3456777888877654
No 110
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.73 E-value=25 Score=31.24 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=20.5
Q ss_pred CCcccccccCCCCc-----CCCCCCccccCCcc---cccCCCC
Q 010445 111 DAAYHCYCQHPPHK-----NVSSGPYLCPKHTK---CHSCGSN 145 (510)
Q Consensus 111 ~~~YH~~CL~P~l~-----~ip~~~W~Cp~C~~---C~~Cg~~ 145 (510)
...|=..||.-... .+....|.||.|.- |..|..+
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk 79 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRK 79 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhcc
Confidence 55555566553222 23567899999976 4445443
No 111
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=30.73 E-value=27 Score=36.88 Aligned_cols=11 Identities=27% Similarity=1.059 Sum_probs=9.0
Q ss_pred CCCCcCCCCCC
Q 010445 80 HWSSWKCPSCR 90 (510)
Q Consensus 80 ~~~~W~C~~C~ 90 (510)
..+++.||.|+
T Consensus 305 ~~gGy~CP~Ck 315 (421)
T COG5151 305 KGGGYECPVCK 315 (421)
T ss_pred ccCceeCCccc
Confidence 35799999996
No 112
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=30.16 E-value=34 Score=36.16 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=16.9
Q ss_pred ceEEcCCCCCccc-ccccCC
Q 010445 103 KFMFCRRCDAAYH-CYCQHP 121 (510)
Q Consensus 103 ~lL~Cd~C~~~YH-~~CL~P 121 (510)
.|++|.-|.-||| ..|++.
T Consensus 147 ~m~QC~iCEDWFHce~c~~~ 166 (345)
T KOG2752|consen 147 EMLQCVICEDWFHCEGCMQA 166 (345)
T ss_pred eeeeEEeccchhcccccCcc
Confidence 6999999999999 788873
No 113
>PF12773 DZR: Double zinc ribbon
Probab=28.82 E-value=50 Score=24.67 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=3.9
Q ss_pred eEEcCCCCC
Q 010445 104 FMFCRRCDA 112 (510)
Q Consensus 104 lL~Cd~C~~ 112 (510)
..+|..|+.
T Consensus 12 ~~fC~~CG~ 20 (50)
T PF12773_consen 12 AKFCPHCGT 20 (50)
T ss_pred ccCChhhcC
Confidence 344444443
No 114
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=28.64 E-value=41 Score=40.20 Aligned_cols=48 Identities=31% Similarity=0.816 Sum_probs=37.3
Q ss_pred ccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC
Q 010445 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 90 (510)
Q Consensus 34 ~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~ 90 (510)
...|..|..+.. . .++.|+.|...||..|+.++.... ..+.|.|+.|.
T Consensus 155 ~~~~~~~~k~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 202 (904)
T KOG1246|consen 155 YPQCNTCSKGKE----E--KLLLCDSCDDSYHTYCLRPPLTRV---PDGDWRCPKCI 202 (904)
T ss_pred chhhhccccCCC----c--cceecccccCcccccccCCCCCcC---CcCcccCCccc
Confidence 457888887652 2 444999999999999999987544 45899999885
No 115
>PRK05580 primosome assembly protein PriA; Validated
Probab=28.35 E-value=56 Score=37.81 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=12.4
Q ss_pred HHHHhcCCCCccccccCC
Q 010445 259 SLRAAAGLPTEDEIFSIS 276 (510)
Q Consensus 259 slR~~~glp~~eei~s~~ 276 (510)
..|...++|+.--+..+.
T Consensus 571 ~~R~~~~~PPf~~l~~i~ 588 (679)
T PRK05580 571 EERRAAGYPPFGRLALLR 588 (679)
T ss_pred HHHHhcCCCCHHHhhEeE
Confidence 567788888777665543
No 116
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=27.87 E-value=12 Score=38.55 Aligned_cols=59 Identities=27% Similarity=0.512 Sum_probs=21.9
Q ss_pred cccccccccc-----CCCC--CCCceeccCcCCccc------ccCCCCchHHHhhhcc---CCCCceeCCCCCCC
Q 010445 173 NYCPVCLKVY-----RDSE--STPMVCCDVCQRWVH------CQCDGISDEKYLQFQV---DGNLQYRCPTCRGE 231 (510)
Q Consensus 173 ~~CpVC~r~Y-----~d~e--~~~mLqCd~C~~wfH------~~Cd~l~~e~y~~~~~---~~~~~Y~C~~Cr~~ 231 (510)
.+||||+... ...+ |..++.|..|..-.| +.|.+...+.|.-+.. +....+.|..|.+-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~Y 247 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSY 247 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEE
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccch
Confidence 4677776543 1111 345666777765443 3344322222222211 12236889999753
No 117
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.87 E-value=18 Score=39.17 Aligned_cols=38 Identities=24% Similarity=0.740 Sum_probs=26.9
Q ss_pred ccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccc
Q 010445 34 NVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQN 75 (510)
Q Consensus 34 ~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~ 75 (510)
...|.+|.++- ...++|-.=..||..||..||..|.+.
T Consensus 4 ~A~C~Ic~d~~----p~~~~l~~i~~cGhifh~~cl~qwfe~ 41 (465)
T KOG0827|consen 4 MAECHICIDGR----PNDHELGPIGTCGHIFHTTCLTQWFEG 41 (465)
T ss_pred cceeeEeccCC----ccccccccccchhhHHHHHHHHHHHcc
Confidence 35899995543 123345555579999999999988764
No 118
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=27.11 E-value=61 Score=22.17 Aligned_cols=29 Identities=34% Similarity=0.809 Sum_probs=21.7
Q ss_pred cCcccccCCCCcceEEcCCCCCccccccc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQ 119 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL 119 (510)
.|.+|++..+....-.|..|.-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 47788776655337889999988888874
No 119
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.00 E-value=22 Score=36.89 Aligned_cols=41 Identities=17% Similarity=0.545 Sum_probs=25.7
Q ss_pred ccccccccccccccCCccCCCCcEEe---CCCCCcchhhhcCCCc
Q 010445 32 NTNVMCRLCFVGENEGCERARRMLSC---KSCGKKYHRNCLKNWA 73 (510)
Q Consensus 32 ~~~~~C~vC~~~G~~gs~~~eeLL~C---~~C~~~yH~~CL~~~~ 73 (510)
.++.+|.+|+..-.. +...+.++-= -+|+..||-.|+.-+-
T Consensus 222 l~d~vCaVCg~~~~~-s~~eegvienty~LsCnHvFHEfCIrGWc 265 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDV-SVDEEGVIENTYKLSCNHVFHEFCIRGWC 265 (328)
T ss_pred CCcchhHhhcchhee-ecchhhhhhhheeeecccchHHHhhhhhe
Confidence 355699999874311 1122233322 2799999999998763
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=26.87 E-value=47 Score=38.97 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=10.9
Q ss_pred HHHHhcCCCCcccccc
Q 010445 259 SLRAAAGLPTEDEIFS 274 (510)
Q Consensus 259 slR~~~glp~~eei~s 274 (510)
..|...++|+..=+..
T Consensus 625 ~~Rk~~~~PPf~~l~~ 640 (730)
T COG1198 625 AERKELGLPPFSRLAA 640 (730)
T ss_pred HHHHhcCCCChhhhee
Confidence 5777888886665543
No 121
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.68 E-value=46 Score=27.08 Aligned_cols=27 Identities=33% Similarity=1.015 Sum_probs=16.9
Q ss_pred CCcCCCCCC-----cCcccccCCCCcceEEcCCCC
Q 010445 82 SSWKCPSCR-----ICEICRRTGDPNKFMFCRRCD 111 (510)
Q Consensus 82 ~~W~C~~C~-----~C~vC~~~gd~~~lL~Cd~C~ 111 (510)
..|.||+|- .|..|++.+ ..-.|..|+
T Consensus 26 v~F~CPnCGe~~I~Rc~~CRk~g---~~Y~Cp~CG 57 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAKCRKLG---NPYRCPKCG 57 (61)
T ss_pred eEeeCCCCCceeeehhhhHHHcC---CceECCCcC
Confidence 578899884 566666666 334455443
No 122
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.32 E-value=6.7 Score=33.35 Aligned_cols=52 Identities=27% Similarity=0.583 Sum_probs=35.4
Q ss_pred CCCCCC-----cCcccccCCCCcceEEcCCCCCcccccccCCCCcCCCCCCccccCCcc
Q 010445 85 KCPSCR-----ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 138 (510)
Q Consensus 85 ~C~~C~-----~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~ 138 (510)
.|--|+ .|.-|+.+|++=.++.= .|...||..|+..-+ ..+...-.||.|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl-~~~tsq~~CPmcRq 78 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWL-NTPTSQGQCPMCRQ 78 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHh-cCccccccCCcchh
Confidence 455555 57778888887565444 899999999998533 23444567887764
No 123
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=26.25 E-value=27 Score=39.81 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=24.8
Q ss_pred cccccccccccCCccCCCCcEEeCCCCCcchhhhcCCC
Q 010445 35 VMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNW 72 (510)
Q Consensus 35 ~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~ 72 (510)
-+|.+|...+-.--.+.+....|..|+..||..|+.-.
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~ 549 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRK 549 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHHHhcc
Confidence 46666633221111225567889999999999999864
No 124
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=26.25 E-value=17 Score=36.39 Aligned_cols=57 Identities=25% Similarity=0.734 Sum_probs=0.0
Q ss_pred CccCCCCcEEeCCCCCcc--------hhhhcCCCccccccCCCCCcCCCCCCcCcccccCCCCc-------------ceE
Q 010445 47 GCERARRMLSCKSCGKKY--------HRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPN-------------KFM 105 (510)
Q Consensus 47 gs~~~eeLL~C~~C~~~y--------H~~CL~~~~~~~~~~~~~~W~C~~C~~C~vC~~~gd~~-------------~lL 105 (510)
++....+.+.|..|++.| |..|...--.. .|..|+++-++. .-.
T Consensus 110 gsssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~---------------lct~cgkgfndtfdlkrh~rthtgvrpy 174 (267)
T KOG3576|consen 110 GSSSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRH---------------LCTFCGKGFNDTFDLKRHTRTHTGVRPY 174 (267)
T ss_pred cCCCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHH---------------HHhhccCcccchhhhhhhhccccCcccc
Q ss_pred EcCCCCCcccccc
Q 010445 106 FCRRCDAAYHCYC 118 (510)
Q Consensus 106 ~Cd~C~~~YH~~C 118 (510)
.|..|+++|-..|
T Consensus 175 kc~~c~kaftqrc 187 (267)
T KOG3576|consen 175 KCSLCEKAFTQRC 187 (267)
T ss_pred chhhhhHHHHhhc
No 125
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=19 Score=37.01 Aligned_cols=57 Identities=28% Similarity=0.574 Sum_probs=40.1
Q ss_pred ccccccccccCCCCCCCcee---ccCcCCcccccCCCC-chHHHhhhccCCCCceeCCCCCCCC
Q 010445 173 NYCPVCLKVYRDSESTPMVC---CDVCQRWVHCQCDGI-SDEKYLQFQVDGNLQYRCPTCRGEC 232 (510)
Q Consensus 173 ~~CpVC~r~Y~d~e~~~mLq---Cd~C~~wfH~~Cd~l-~~e~y~~~~~~~~~~Y~C~~Cr~~~ 232 (510)
.+|-+|...-.|+-...||. |-.=.+|||..|+.. -+|+- + .++-..-.|+.|+.++
T Consensus 21 R~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~-~--~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 21 RCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQ-R--GNPLQTVSCPQCQTEY 81 (293)
T ss_pred eeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHh-c--CCCCceeechhhcchh
Confidence 46888888776665556775 777789999999983 23331 1 3345678999999874
No 126
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.87 E-value=49 Score=37.39 Aligned_cols=47 Identities=26% Similarity=0.496 Sum_probs=35.7
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccCCCCcCC-CCCCccccCCcccc
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPKHTKCH 140 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~P~l~~i-p~~~W~Cp~C~~C~ 140 (510)
+|+-|.-++ ..|.|..|-+.||.-|+.|.-... ....|-||.|..|.
T Consensus 62 ~cfechlpg---~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 62 FCFECHLPG---AVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred ccccccCCc---ceeeeehhhccccccccCcchhhccccccccCCcccccC
Confidence 455566666 899999999999999999744322 35689999988753
No 127
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.78 E-value=29 Score=40.40 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=20.4
Q ss_pred CCCCCCccccCCcccccCCCCCCCCCCccccccCcccccccccc
Q 010445 125 NVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRL 168 (510)
Q Consensus 125 ~ip~~~W~Cp~C~~C~~Cg~~~pgk~~s~rW~~~~~lC~~C~~~ 168 (510)
.+|.+--.|+.|.. ..-...+.|+..++..|..|+.-
T Consensus 96 ~I~pD~a~C~~Cl~-------Ei~dp~~rrY~YPF~~CT~CGPR 132 (750)
T COG0068 96 QIPPDAATCEDCLE-------EIFDPNSRRYLYPFINCTNCGPR 132 (750)
T ss_pred ccCCchhhhHHHHH-------HhcCCCCcceeccccccCCCCcc
Confidence 34556667777764 11111234566677777777643
No 128
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=24.91 E-value=48 Score=34.99 Aligned_cols=59 Identities=19% Similarity=0.519 Sum_probs=28.5
Q ss_pred cccccccccc-------CCCCCCCceeccCcCCccc------ccCCCCchHHHhhhcc--CCCCceeCCCCCCC
Q 010445 173 NYCPVCLKVY-------RDSESTPMVCCDVCQRWVH------CQCDGISDEKYLQFQV--DGNLQYRCPTCRGE 231 (510)
Q Consensus 173 ~~CpVC~r~Y-------~d~e~~~mLqCd~C~~wfH------~~Cd~l~~e~y~~~~~--~~~~~Y~C~~Cr~~ 231 (510)
.+||||+..- ...++...+.|..|....| +.|.......|..+.. ..--...|.+|.+-
T Consensus 188 ~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~Y 261 (309)
T PRK03564 188 QFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTY 261 (309)
T ss_pred CCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCCceeeeeecCCCcceEeeeccccccc
Confidence 4677776542 1223455666777765444 2333322222322211 11135789888764
No 129
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=24.81 E-value=63 Score=26.18 Aligned_cols=8 Identities=38% Similarity=1.335 Sum_probs=6.3
Q ss_pred CCcCCCCC
Q 010445 82 SSWKCPSC 89 (510)
Q Consensus 82 ~~W~C~~C 89 (510)
..|.||+|
T Consensus 24 ~~F~CPnC 31 (59)
T PRK14890 24 VKFLCPNC 31 (59)
T ss_pred CEeeCCCC
Confidence 57888887
No 130
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.38 E-value=31 Score=28.79 Aligned_cols=28 Identities=32% Similarity=0.854 Sum_probs=19.5
Q ss_pred cccccCcccccccccccccccccccccc
Q 010445 153 VRWFLGYTCCDACGRLFVKGNYCPVCLK 180 (510)
Q Consensus 153 ~rW~~~~~lC~~C~~~~~kg~~CpVC~r 180 (510)
.+|..+...|..|...|...-+||-|..
T Consensus 11 L~~~~~~~~C~~C~~~~~~~a~CPdC~~ 38 (70)
T PF07191_consen 11 LEWQGGHYHCEACQKDYKKEAFCPDCGQ 38 (70)
T ss_dssp EEEETTEEEETTT--EEEEEEE-TTT-S
T ss_pred cEEeCCEEECccccccceecccCCCccc
Confidence 5777777789999888888888998875
No 131
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.36 E-value=26 Score=38.64 Aligned_cols=44 Identities=23% Similarity=0.571 Sum_probs=30.3
Q ss_pred cCcccccCCCCc-ceEEcCCCCCcccccccCCCCcCCCCCCccccCCcccc
Q 010445 91 ICEICRRTGDPN-KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH 140 (510)
Q Consensus 91 ~C~vC~~~gd~~-~lL~Cd~C~~~YH~~CL~P~l~~ip~~~W~Cp~C~~C~ 140 (510)
+|.+|-+.-+++ .+++=..|...||..|+..- ..-.||-|+.|.
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w------~~~scpvcR~~q 221 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKW------WDSSCPVCRYCQ 221 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhc------ccCcChhhhhhc
Confidence 778887655543 57788899999999999842 223466666543
No 132
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=23.28 E-value=51 Score=38.63 Aligned_cols=49 Identities=24% Similarity=0.582 Sum_probs=31.1
Q ss_pred cccccccccccccCCccCCCCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCCc
Q 010445 33 TNVMCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRI 91 (510)
Q Consensus 33 ~~~~C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~~ 91 (510)
...-|.+|+..- +..-+.|..|...| +.|+..-.... ...-|.|+.|+-
T Consensus 1116 ~~vdc~~cg~~i------~~~~~~c~ec~~kf-P~CiasG~pIt---~~~fWlC~~CkH 1164 (1189)
T KOG2041|consen 1116 AKVDCSVCGAKI------DPYDLQCSECQTKF-PVCIASGRPIT---DNIFWLCPRCKH 1164 (1189)
T ss_pred cceeeeecCCcC------CccCCCChhhcCcC-ceeeccCCccc---cceEEEcccccc
Confidence 456788887643 23567888888777 66776542211 124799888763
No 133
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.11 E-value=64 Score=22.59 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=7.0
Q ss_pred CCccccCCc
Q 010445 129 GPYLCPKHT 137 (510)
Q Consensus 129 ~~W~Cp~C~ 137 (510)
..|.||.|-
T Consensus 16 ~~~~CP~Cg 24 (33)
T cd00350 16 APWVCPVCG 24 (33)
T ss_pred CCCcCcCCC
Confidence 678888875
No 134
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=23.11 E-value=38 Score=22.41 Aligned_cols=15 Identities=27% Similarity=1.023 Sum_probs=11.6
Q ss_pred CcEEeCCCCCcchhh
Q 010445 53 RMLSCKSCGKKYHRN 67 (510)
Q Consensus 53 eLL~C~~C~~~yH~~ 67 (510)
+|+.|..|++.|.+.
T Consensus 1 ~l~~C~~CgR~F~~~ 15 (25)
T PF13913_consen 1 ELVPCPICGRKFNPD 15 (25)
T ss_pred CCCcCCCCCCEECHH
Confidence 477889999998653
No 135
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=22.28 E-value=57 Score=34.79 Aligned_cols=18 Identities=39% Similarity=0.923 Sum_probs=11.9
Q ss_pred CCCCCccccCCcc--cccCC
Q 010445 126 VSSGPYLCPKHTK--CHSCG 143 (510)
Q Consensus 126 ip~~~W~Cp~C~~--C~~Cg 143 (510)
.+...++|+.|.. |..|.
T Consensus 341 ~~~~~y~C~~Ck~~FCldCD 360 (378)
T KOG2807|consen 341 LSSGRYRCESCKNVFCLDCD 360 (378)
T ss_pred CCCCcEEchhccceeeccch
Confidence 4456778887743 76775
No 136
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=22.28 E-value=48 Score=35.57 Aligned_cols=35 Identities=34% Similarity=0.915 Sum_probs=24.3
Q ss_pred CCcEEeCCCCCcchhhhcCCCccccccCCCCCcCCCCCC---cCcccccCCC
Q 010445 52 RRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR---ICEICRRTGD 100 (510)
Q Consensus 52 eeLL~C~~C~~~yH~~CL~~~~~~~~~~~~~~W~C~~C~---~C~vC~~~gd 100 (510)
++-|.|++|++.- +....+.|..|. .|+.|...+-
T Consensus 6 He~v~CdgC~k~~--------------~t~rrYkCL~C~DyDlC~sCyen~~ 43 (381)
T KOG1280|consen 6 HEGVSCDGCGKTA--------------FTFRRYKCLRCSDYDLCFSCYENGA 43 (381)
T ss_pred cCCceeccccccc--------------eeeeeeEeeeecchhHHHHHhhcCC
Confidence 3678999998432 122466788886 8999987664
No 137
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=21.78 E-value=35 Score=35.26 Aligned_cols=26 Identities=15% Similarity=0.473 Sum_probs=16.6
Q ss_pred ccccccccCCCCCCCceeccCcCCccc
Q 010445 175 CPVCLKVYRDSESTPMVCCDVCQRWVH 201 (510)
Q Consensus 175 CpVC~r~Y~d~e~~~mLqCd~C~~wfH 201 (510)
|.-|.|.. .+.++.++.|..|..|+-
T Consensus 128 C~EC~R~v-w~hGGrif~CsfC~~flC 153 (314)
T PF06524_consen 128 CIECERGV-WDHGGRIFKCSFCDNFLC 153 (314)
T ss_pred eeeeeccc-ccCCCeEEEeecCCCeee
Confidence 44455533 223788888998888763
No 138
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=21.23 E-value=23 Score=29.31 Aligned_cols=20 Identities=30% Similarity=0.745 Sum_probs=18.5
Q ss_pred ceEEcCCCCCcccccccCCC
Q 010445 103 KFMFCRRCDAAYHCYCQHPP 122 (510)
Q Consensus 103 ~lL~Cd~C~~~YH~~CL~P~ 122 (510)
.|+.|..|+.+-|-.|++|.
T Consensus 42 AMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 42 AMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred HHHHHhhccchhccccccHH
Confidence 59999999999999999974
No 139
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=21.19 E-value=60 Score=27.43 Aligned_cols=29 Identities=17% Similarity=0.495 Sum_probs=20.4
Q ss_pred cCcccccCCCCcceEEcCCCCCcccccccC
Q 010445 91 ICEICRRTGDPNKFMFCRRCDAAYHCYCQH 120 (510)
Q Consensus 91 ~C~vC~~~gd~~~lL~Cd~C~~~YH~~CL~ 120 (510)
.|.+|++.-... .+.-.-|+..||..|+.
T Consensus 80 ~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 80 KCSVCGKPLGNS-VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence 788898876553 33334567999999975
No 140
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=21.10 E-value=41 Score=34.90 Aligned_cols=65 Identities=20% Similarity=0.383 Sum_probs=37.8
Q ss_pred cccccccccccccCCCCCCC-------c-eeccCcCCcccccCCCCchHHHhhhccCCCCceeCCCCCCCCCCCcch
Q 010445 170 VKGNYCPVCLKVYRDSESTP-------M-VCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQVRDL 238 (510)
Q Consensus 170 ~kg~~CpVC~r~Y~d~e~~~-------m-LqCd~C~~wfH~~Cd~l~~e~y~~~~~~~~~~Y~C~~Cr~~~~~I~~~ 238 (510)
.+...|++|+|.|..+.... | ..|..|.+.|+.-=+- .- -++. -.++..|.|+.|.+...+--+|
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLL--QG-HiRT-HTGEKPF~C~hC~kAFADRSNL 231 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLL--QG-HIRT-HTGEKPFSCPHCGKAFADRSNL 231 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHh--hc-cccc-ccCCCCccCCcccchhcchHHH
Confidence 44557999999997654222 2 2389999988732111 00 0000 1256689999998765443333
No 141
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.91 E-value=50 Score=22.82 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=12.7
Q ss_pred ccccccccccCCCCCCCceeccCcCC
Q 010445 173 NYCPVCLKVYRDSESTPMVCCDVCQR 198 (510)
Q Consensus 173 ~~CpVC~r~Y~d~e~~~mLqCd~C~~ 198 (510)
.||+.|+-.-....++-.+.|..|..
T Consensus 4 rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 4 RFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp SB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred cccCcCCccccCCCCcCEeECCCCcC
Confidence 47777776555445555666777764
No 142
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=20.55 E-value=31 Score=24.57 Aligned_cols=31 Identities=19% Similarity=0.761 Sum_probs=22.2
Q ss_pred cccccccccCCccCCCCcEEeCCCCCcchhhhcCCCcc
Q 010445 37 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQ 74 (510)
Q Consensus 37 C~vC~~~G~~gs~~~eeLL~C~~C~~~yH~~CL~~~~~ 74 (510)
|.+|.+.- .+-+.-..||..|...|+.....
T Consensus 1 C~iC~~~~-------~~~~~~~~CGH~fC~~C~~~~~~ 31 (39)
T PF13923_consen 1 CPICLDEL-------RDPVVVTPCGHSFCKECIEKYLE 31 (39)
T ss_dssp ETTTTSB--------SSEEEECTTSEEEEHHHHHHHHH
T ss_pred CCCCCCcc-------cCcCEECCCCCchhHHHHHHHHH
Confidence 56776633 25567889999999999886543
No 143
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.46 E-value=52 Score=33.78 Aligned_cols=33 Identities=27% Similarity=0.618 Sum_probs=15.3
Q ss_pred cccccccccccc----CCcc-CCCCcEEeCCCCCcchh
Q 010445 34 NVMCRLCFVGEN----EGCE-RARRMLSCKSCGKKYHR 66 (510)
Q Consensus 34 ~~~C~vC~~~G~----~gs~-~~eeLL~C~~C~~~yH~ 66 (510)
...|-+|++.-. .+.+ .....+.|.-|+..||.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~ 209 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF 209 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee
Confidence 369999998521 0111 13489999999987765
Done!