Query 010446
Match_columns 510
No_of_seqs 1185 out of 2911
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 00:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 100.0 2.7E-33 5.8E-38 260.0 44.7 311 188-501 184-494 (508)
2 KOG4626 O-linked N-acetylgluco 100.0 9.5E-35 2.1E-39 262.6 23.2 273 158-487 214-486 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 2.3E-34 5.1E-39 260.1 21.4 307 121-487 119-452 (966)
4 KOG1840 Kinesin light chain [C 100.0 2.7E-31 5.9E-36 246.6 40.7 308 155-465 192-500 (508)
5 TIGR00990 3a0801s09 mitochondr 100.0 2.2E-26 4.7E-31 230.3 36.3 317 120-489 162-574 (615)
6 TIGR00990 3a0801s09 mitochondr 100.0 7.2E-26 1.6E-30 226.5 38.0 317 117-486 126-537 (615)
7 PRK15174 Vi polysaccharide exp 99.9 1.8E-23 3.9E-28 208.5 36.0 305 120-491 78-386 (656)
8 PRK15174 Vi polysaccharide exp 99.9 7.1E-23 1.5E-27 204.2 35.3 299 121-486 45-347 (656)
9 KOG1130 Predicted G-alpha GTPa 99.9 5.7E-24 1.2E-28 184.2 23.2 319 168-503 23-361 (639)
10 PRK11788 tetratricopeptide rep 99.9 8.2E-22 1.8E-26 187.8 38.2 314 116-487 33-348 (389)
11 PRK11447 cellulose synthase su 99.9 4.6E-22 9.9E-27 212.0 38.3 321 124-486 275-700 (1157)
12 KOG1130 Predicted G-alpha GTPa 99.9 1.4E-22 2.9E-27 175.8 25.3 330 121-472 20-370 (639)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 1.6E-21 3.4E-26 207.2 35.6 300 119-487 568-867 (899)
14 PRK11447 cellulose synthase su 99.9 1.7E-21 3.6E-26 207.7 35.7 309 122-485 355-739 (1157)
15 TIGR02917 PEP_TPR_lipo putativ 99.9 9.4E-21 2E-25 201.3 37.5 306 120-486 501-832 (899)
16 KOG0547 Translocase of outer m 99.9 9.3E-21 2E-25 168.0 29.0 330 115-489 112-569 (606)
17 KOG1126 DNA-binding cell divis 99.9 1.1E-21 2.4E-26 180.8 24.0 294 126-487 327-621 (638)
18 PRK11788 tetratricopeptide rep 99.9 2.5E-20 5.4E-25 177.6 32.8 277 162-486 35-311 (389)
19 KOG2002 TPR-containing nuclear 99.9 1.8E-19 4E-24 172.6 31.7 333 117-487 306-710 (1018)
20 PRK10049 pgaA outer membrane p 99.9 1.5E-18 3.2E-23 177.2 36.9 318 121-487 52-423 (765)
21 KOG2002 TPR-containing nuclear 99.9 1.2E-18 2.5E-23 167.2 32.9 305 132-487 250-560 (1018)
22 PRK09782 bacteriophage N4 rece 99.9 6.4E-19 1.4E-23 180.0 31.6 269 158-487 471-741 (987)
23 PRK09782 bacteriophage N4 rece 99.9 2.9E-18 6.2E-23 175.2 36.0 305 118-487 376-707 (987)
24 PRK10049 pgaA outer membrane p 99.9 4.8E-18 1E-22 173.4 37.7 320 121-487 86-457 (765)
25 KOG1155 Anaphase-promoting com 99.9 1.9E-18 4.1E-23 152.6 29.3 278 158-485 258-535 (559)
26 KOG1126 DNA-binding cell divis 99.9 6.5E-20 1.4E-24 169.3 19.3 265 121-444 356-620 (638)
27 KOG1173 Anaphase-promoting com 99.8 1.2E-18 2.5E-23 157.8 25.5 280 113-444 239-518 (611)
28 KOG1155 Anaphase-promoting com 99.8 3.5E-18 7.7E-23 150.9 25.5 268 124-443 268-535 (559)
29 KOG2076 RNA polymerase III tra 99.8 2.1E-17 4.5E-22 157.7 31.4 322 114-484 135-510 (895)
30 PRK04841 transcriptional regul 99.8 1.6E-16 3.5E-21 167.9 41.0 436 41-489 260-763 (903)
31 PLN03218 maturation of RBCL 1; 99.8 3.1E-16 6.7E-21 161.6 39.1 304 125-485 479-782 (1060)
32 KOG1129 TPR repeat-containing 99.8 1.6E-18 3.5E-23 146.3 18.2 282 128-464 189-470 (478)
33 PLN03218 maturation of RBCL 1; 99.8 2.7E-16 5.8E-21 162.1 37.9 308 121-485 440-747 (1060)
34 KOG0548 Molecular co-chaperone 99.8 7.8E-17 1.7E-21 145.5 26.6 324 121-487 5-456 (539)
35 KOG1173 Anaphase-promoting com 99.8 3.3E-17 7.2E-22 148.5 23.9 278 160-487 242-519 (611)
36 KOG0624 dsRNA-activated protei 99.8 2.4E-16 5.1E-21 134.2 26.1 319 117-487 37-371 (504)
37 COG2956 Predicted N-acetylgluc 99.8 3.8E-15 8.3E-20 126.0 32.3 306 121-485 38-346 (389)
38 KOG1129 TPR repeat-containing 99.8 4.8E-17 1E-21 137.5 20.5 284 158-491 177-463 (478)
39 KOG1941 Acetylcholine receptor 99.8 4.5E-15 9.8E-20 127.4 32.4 346 121-487 9-361 (518)
40 KOG2003 TPR repeat-containing 99.8 2.2E-17 4.8E-22 145.5 18.3 324 125-487 244-690 (840)
41 KOG0547 Translocase of outer m 99.8 2.3E-16 5E-21 140.4 23.1 272 133-447 294-569 (606)
42 PRK12370 invasion protein regu 99.8 3.5E-16 7.6E-21 154.0 27.1 251 132-443 275-534 (553)
43 PF13429 TPR_15: Tetratricopep 99.8 1.2E-17 2.5E-22 150.7 14.1 266 122-444 12-277 (280)
44 TIGR00540 hemY_coli hemY prote 99.8 6.4E-15 1.4E-19 139.8 33.2 316 119-490 85-403 (409)
45 PRK12370 invasion protein regu 99.8 1.8E-15 3.8E-20 149.0 30.3 263 164-485 260-534 (553)
46 PLN03081 pentatricopeptide (PP 99.8 8.2E-16 1.8E-20 156.7 28.9 293 124-486 265-557 (697)
47 PF13429 TPR_15: Tetratricopep 99.8 1.2E-17 2.7E-22 150.6 13.9 267 166-487 12-278 (280)
48 TIGR02521 type_IV_pilW type IV 99.7 1.4E-15 3E-20 134.1 25.5 205 242-486 28-232 (234)
49 KOG2003 TPR repeat-containing 99.7 4.7E-15 1E-19 131.0 28.0 286 121-472 422-709 (840)
50 COG3063 PilF Tfp pilus assembl 99.7 1.1E-15 2.3E-20 123.5 21.6 205 243-487 33-237 (250)
51 COG3063 PilF Tfp pilus assembl 99.7 1.6E-15 3.5E-20 122.5 21.9 204 200-443 32-235 (250)
52 cd05804 StaR_like StaR_like; a 99.7 4.9E-14 1.1E-18 132.5 35.6 332 121-493 9-343 (355)
53 TIGR02521 type_IV_pilW type IV 99.7 3.6E-15 7.7E-20 131.5 25.5 204 200-443 28-231 (234)
54 PRK11189 lipoprotein NlpI; Pro 99.7 9.6E-15 2.1E-19 131.8 28.2 227 175-444 39-265 (296)
55 PRK10747 putative protoheme IX 99.7 6.4E-14 1.4E-18 132.2 34.1 303 119-489 85-393 (398)
56 PLN03081 pentatricopeptide (PP 99.7 5.5E-15 1.2E-19 150.7 28.0 295 121-481 161-486 (697)
57 COG2956 Predicted N-acetylgluc 99.7 3.7E-14 8.1E-19 120.1 27.5 270 166-485 39-310 (389)
58 PRK11189 lipoprotein NlpI; Pro 99.7 1.1E-14 2.4E-19 131.4 25.7 228 216-487 39-266 (296)
59 PRK14574 hmsH outer membrane p 99.7 8E-14 1.7E-18 140.1 34.1 144 331-486 329-479 (822)
60 PRK04841 transcriptional regul 99.7 3.4E-13 7.3E-18 142.9 40.1 315 123-447 414-763 (903)
61 PRK14574 hmsH outer membrane p 99.7 2.6E-13 5.6E-18 136.5 36.5 324 121-487 105-514 (822)
62 KOG2076 RNA polymerase III tra 99.7 1.4E-13 3.1E-18 131.9 32.6 285 162-487 139-479 (895)
63 KOG1941 Acetylcholine receptor 99.7 6E-14 1.3E-18 120.6 27.0 314 165-495 9-328 (518)
64 KOG1174 Anaphase-promoting com 99.7 8.8E-14 1.9E-18 121.6 27.7 298 124-487 202-501 (564)
65 KOG1125 TPR repeat-containing 99.7 1E-14 2.2E-19 133.1 22.5 208 121-361 288-530 (579)
66 KOG0550 Molecular chaperone (D 99.7 1.2E-14 2.7E-19 127.0 21.1 291 116-445 47-351 (486)
67 PLN03077 Protein ECB2; Provisi 99.7 3.2E-13 7E-18 141.2 32.5 140 330-485 555-719 (857)
68 KOG1125 TPR repeat-containing 99.7 2.7E-14 5.8E-19 130.4 21.0 268 166-476 289-561 (579)
69 KOG0624 dsRNA-activated protei 99.6 5.6E-13 1.2E-17 114.0 27.3 284 115-444 69-370 (504)
70 KOG4162 Predicted calmodulin-b 99.6 1.9E-12 4.1E-17 122.3 33.3 320 125-489 401-786 (799)
71 KOG1174 Anaphase-promoting com 99.6 3.6E-13 7.9E-18 117.9 25.7 267 118-444 232-500 (564)
72 TIGR00540 hemY_coli hemY prote 99.6 6E-13 1.3E-17 126.4 29.1 280 121-447 121-402 (409)
73 PLN03077 Protein ECB2; Provisi 99.6 2.8E-13 6E-18 141.7 28.0 163 287-485 424-617 (857)
74 cd05804 StaR_like StaR_like; a 99.6 2.9E-12 6.3E-17 120.5 30.8 295 121-451 46-343 (355)
75 KOG0550 Molecular chaperone (D 99.6 7.8E-14 1.7E-18 122.1 16.7 287 161-489 48-353 (486)
76 KOG0548 Molecular co-chaperone 99.6 1.8E-12 3.8E-17 117.8 24.8 260 120-440 226-485 (539)
77 TIGR03302 OM_YfiO outer membra 99.6 1.1E-12 2.3E-17 115.4 23.0 182 282-485 28-231 (235)
78 KOG1156 N-terminal acetyltrans 99.6 1.8E-11 3.9E-16 113.6 31.1 320 120-487 9-435 (700)
79 TIGR03302 OM_YfiO outer membra 99.6 1.2E-12 2.6E-17 115.1 22.9 180 242-443 30-231 (235)
80 PRK10747 putative protoheme IX 99.6 6.7E-12 1.5E-16 118.6 29.4 264 122-445 122-391 (398)
81 KOG2376 Signal recognition par 99.5 4.4E-10 9.5E-15 103.5 34.4 342 119-504 13-424 (652)
82 PF14938 SNAP: Soluble NSF att 99.5 1.5E-11 3.2E-16 110.4 22.9 228 201-441 33-263 (282)
83 KOG2376 Signal recognition par 99.5 1.9E-09 4.1E-14 99.4 36.0 333 122-485 83-486 (652)
84 PF14938 SNAP: Soluble NSF att 99.5 6.9E-12 1.5E-16 112.5 20.4 226 243-481 33-261 (282)
85 KOG0495 HAT repeat protein [RN 99.5 2E-10 4.3E-15 106.8 29.6 309 119-487 517-847 (913)
86 KOG0495 HAT repeat protein [RN 99.5 5.5E-10 1.2E-14 103.9 31.1 275 155-487 509-783 (913)
87 PF12569 NARP1: NMDA receptor- 99.4 1.4E-09 3E-14 103.9 34.1 292 121-450 7-340 (517)
88 KOG4162 Predicted calmodulin-b 99.4 2.4E-10 5.3E-15 108.4 28.0 261 135-445 461-784 (799)
89 PF12569 NARP1: NMDA receptor- 99.4 3.5E-10 7.7E-15 107.9 28.5 297 161-494 3-342 (517)
90 COG2909 MalT ATP-dependent tra 99.4 1.9E-09 4E-14 104.6 32.1 413 39-483 264-685 (894)
91 PLN02789 farnesyltranstransfer 99.4 5.4E-10 1.2E-14 100.7 27.0 217 204-470 38-268 (320)
92 COG3071 HemY Uncharacterized e 99.4 1.1E-08 2.5E-13 90.1 33.7 304 120-489 86-393 (400)
93 PLN02789 farnesyltranstransfer 99.4 5E-10 1.1E-14 100.9 26.4 209 171-428 46-268 (320)
94 KOG1127 TPR repeat-containing 99.4 5.4E-10 1.2E-14 108.7 25.6 338 121-498 565-1008(1238)
95 KOG3785 Uncharacterized conser 99.3 7.2E-09 1.6E-13 89.7 28.9 317 122-481 61-452 (557)
96 KOG1156 N-terminal acetyltrans 99.3 3.1E-08 6.7E-13 92.6 35.0 311 123-483 80-465 (700)
97 PF13424 TPR_12: Tetratricopep 99.3 7.6E-12 1.7E-16 88.3 9.0 78 411-489 1-78 (78)
98 PRK15179 Vi polysaccharide bio 99.3 2.3E-10 4.9E-15 113.4 22.2 167 121-317 51-218 (694)
99 KOG1127 TPR repeat-containing 99.3 9.1E-09 2E-13 100.5 30.5 235 130-406 470-704 (1238)
100 PRK15179 Vi polysaccharide bio 99.3 1.1E-09 2.3E-14 108.7 23.4 191 161-403 27-218 (694)
101 KOG3785 Uncharacterized conser 99.3 4.4E-09 9.6E-14 90.9 23.8 311 126-483 30-419 (557)
102 PRK15359 type III secretion sy 99.3 1.8E-10 3.9E-15 91.6 14.3 126 138-299 13-138 (144)
103 PF13424 TPR_12: Tetratricopep 99.3 6E-11 1.3E-15 83.7 9.8 78 199-277 1-78 (78)
104 KOG1915 Cell cycle control pro 99.3 1.4E-07 3E-12 85.1 32.4 269 199-487 204-537 (677)
105 KOG2300 Uncharacterized conser 99.2 9.8E-08 2.1E-12 86.2 31.3 349 118-490 7-518 (629)
106 PRK10370 formate-dependent nit 99.2 5.4E-09 1.2E-13 87.9 21.9 150 168-359 22-174 (198)
107 PRK15359 type III secretion sy 99.2 3.8E-10 8.3E-15 89.8 13.8 125 182-340 13-137 (144)
108 KOG3617 WD40 and TPR repeat-co 99.2 4.2E-08 9.1E-13 94.0 28.6 288 167-485 831-1173(1416)
109 PRK14720 transcript cleavage f 99.2 1.1E-08 2.5E-13 102.3 26.3 253 195-489 23-286 (906)
110 KOG1128 Uncharacterized conser 99.2 1.3E-09 2.8E-14 103.0 17.9 232 204-500 399-630 (777)
111 KOG1839 Uncharacterized protei 99.2 1.2E-08 2.5E-13 103.3 25.7 206 292-500 937-1142(1236)
112 PF13525 YfiO: Outer membrane 99.2 3.9E-08 8.5E-13 83.5 24.9 183 118-349 5-198 (203)
113 COG5010 TadD Flp pilus assembl 99.2 3.9E-09 8.5E-14 88.0 17.9 165 158-354 63-227 (257)
114 KOG1585 Protein required for f 99.2 1.1E-07 2.5E-12 78.1 25.0 227 239-481 25-251 (308)
115 PRK14720 transcript cleavage f 99.2 1.2E-08 2.6E-13 102.2 23.3 249 155-444 24-283 (906)
116 KOG4340 Uncharacterized conser 99.1 2.7E-08 5.8E-13 84.2 20.9 228 127-397 19-265 (459)
117 KOG2047 mRNA splicing factor [ 99.1 3.5E-07 7.6E-12 85.6 29.8 336 124-485 175-578 (835)
118 CHL00033 ycf3 photosystem I as 99.1 4E-09 8.7E-14 87.0 15.8 116 200-328 32-154 (168)
119 PRK10370 formate-dependent nit 99.1 4.5E-09 9.7E-14 88.4 16.0 119 131-274 52-173 (198)
120 PRK10866 outer membrane biogen 99.1 1.3E-07 2.8E-12 82.2 25.3 186 120-354 34-237 (243)
121 KOG2300 Uncharacterized conser 99.1 7E-06 1.5E-10 74.6 36.1 339 129-484 178-554 (629)
122 PF13525 YfiO: Outer membrane 99.1 6.8E-08 1.5E-12 82.0 22.4 184 161-393 4-198 (203)
123 COG5010 TadD Flp pilus assembl 99.1 5.4E-09 1.2E-13 87.2 14.5 159 122-313 70-228 (257)
124 CHL00033 ycf3 photosystem I as 99.1 1.2E-08 2.5E-13 84.2 16.5 117 326-457 32-155 (168)
125 KOG3617 WD40 and TPR repeat-co 99.1 7E-07 1.5E-11 86.0 30.0 266 158-443 854-1173(1416)
126 KOG1128 Uncharacterized conser 99.1 5E-08 1.1E-12 92.6 21.6 218 124-407 404-621 (777)
127 PRK15363 pathogenicity island 99.1 8.4E-09 1.8E-13 80.2 13.8 102 200-317 32-133 (157)
128 KOG1915 Cell cycle control pro 99.1 2.2E-06 4.8E-11 77.6 30.7 270 161-444 206-536 (677)
129 COG3071 HemY Uncharacterized e 99.1 1.6E-06 3.4E-11 77.0 29.2 271 120-446 120-392 (400)
130 PF10345 Cohesin_load: Cohesin 99.0 3.3E-05 7.2E-10 77.5 43.0 334 155-495 52-442 (608)
131 PRK10866 outer membrane biogen 99.0 1.9E-07 4.1E-12 81.2 23.3 175 286-482 31-237 (243)
132 PF09976 TPR_21: Tetratricopep 99.0 7.2E-08 1.6E-12 77.2 18.4 135 118-272 11-145 (145)
133 TIGR02552 LcrH_SycD type III s 99.0 1.6E-08 3.5E-13 80.2 14.6 102 158-274 13-114 (135)
134 PF09976 TPR_21: Tetratricopep 99.0 7.6E-08 1.6E-12 77.0 18.4 123 299-442 23-145 (145)
135 KOG2047 mRNA splicing factor [ 99.0 1.3E-06 2.7E-11 82.1 28.4 243 129-400 358-613 (835)
136 KOG4340 Uncharacterized conser 99.0 1.5E-07 3.2E-12 79.8 20.2 225 173-440 21-266 (459)
137 KOG0553 TPR repeat-containing 99.0 1E-08 2.2E-13 87.3 13.3 101 115-232 78-178 (304)
138 TIGR02552 LcrH_SycD type III s 99.0 2.7E-08 6E-13 78.9 15.3 103 241-359 13-115 (135)
139 PRK15363 pathogenicity island 99.0 3.1E-08 6.7E-13 77.1 14.8 102 115-233 32-133 (157)
140 KOG0553 TPR repeat-containing 99.0 1.9E-08 4.1E-13 85.7 13.4 122 243-390 79-200 (304)
141 KOG3060 Uncharacterized conser 99.0 1.7E-06 3.6E-11 72.0 24.1 192 218-445 27-221 (289)
142 KOG3060 Uncharacterized conser 98.9 2.8E-06 6.1E-11 70.6 25.2 195 130-359 24-221 (289)
143 KOG1585 Protein required for f 98.9 3.4E-06 7.5E-11 69.6 25.3 224 158-396 27-250 (308)
144 KOG1839 Uncharacterized protei 98.9 3.4E-08 7.4E-13 100.1 16.9 212 247-461 934-1145(1236)
145 PRK02603 photosystem I assembl 98.9 8E-08 1.7E-12 79.5 16.6 115 324-453 30-151 (172)
146 PF04733 Coatomer_E: Coatomer 98.9 5.8E-08 1.3E-12 86.6 16.5 252 171-485 10-264 (290)
147 PRK02603 photosystem I assembl 98.9 9E-08 2E-12 79.2 16.6 112 198-322 30-148 (172)
148 PF04733 Coatomer_E: Coatomer 98.9 5.6E-08 1.2E-12 86.6 14.7 263 124-457 7-273 (290)
149 TIGR02795 tol_pal_ybgF tol-pal 98.9 1E-07 2.2E-12 73.7 14.2 103 246-358 3-105 (119)
150 TIGR02795 tol_pal_ybgF tol-pal 98.9 8.6E-08 1.9E-12 74.2 13.5 103 330-444 3-105 (119)
151 PLN03088 SGT1, suppressor of 98.8 1.1E-07 2.5E-12 88.0 13.8 95 121-232 5-99 (356)
152 COG4783 Putative Zn-dependent 98.8 1.8E-06 3.9E-11 78.7 19.6 134 243-402 304-437 (484)
153 KOG3616 Selective LIM binding 98.7 2.9E-05 6.2E-10 74.4 27.8 208 121-358 663-911 (1636)
154 PF12895 Apc3: Anaphase-promot 98.7 1.1E-07 2.3E-12 68.0 9.4 84 130-229 1-84 (84)
155 PF12688 TPR_5: Tetratrico pep 98.7 7.1E-07 1.5E-11 67.4 13.7 102 288-401 2-103 (120)
156 PF12688 TPR_5: Tetratrico pep 98.7 4.9E-07 1.1E-11 68.2 12.5 102 246-357 2-103 (120)
157 KOG3616 Selective LIM binding 98.7 0.0001 2.2E-09 70.8 30.1 208 247-484 663-909 (1636)
158 PF12895 Apc3: Anaphase-promot 98.7 1.9E-07 4.1E-12 66.7 9.4 83 216-313 2-84 (84)
159 PLN03088 SGT1, suppressor of 98.7 3.9E-07 8.4E-12 84.5 13.8 113 165-300 5-117 (356)
160 COG2909 MalT ATP-dependent tra 98.7 0.00011 2.3E-09 72.5 30.2 265 162-441 415-685 (894)
161 COG4783 Putative Zn-dependent 98.7 4.4E-06 9.5E-11 76.3 19.2 133 160-315 304-436 (484)
162 PF13414 TPR_11: TPR repeat; P 98.7 1.9E-07 4E-12 63.9 8.2 64 415-486 3-67 (69)
163 PF13414 TPR_11: TPR repeat; P 98.6 2E-07 4.3E-12 63.8 8.1 64 245-316 3-67 (69)
164 KOG1070 rRNA processing protei 98.6 2.8E-05 6.1E-10 79.6 25.4 249 200-490 1455-1704(1710)
165 PF10345 Cohesin_load: Cohesin 98.6 0.00087 1.9E-08 67.5 42.0 367 112-485 173-605 (608)
166 KOG1586 Protein required for f 98.6 1.7E-05 3.8E-10 65.1 19.5 198 213-443 24-223 (288)
167 KOG1070 rRNA processing protei 98.6 4.7E-06 1E-10 85.0 19.2 210 241-486 1454-1663(1710)
168 KOG2471 TPR repeat-containing 98.6 5.6E-05 1.2E-09 69.1 24.0 304 160-483 238-681 (696)
169 KOG0543 FKBP-type peptidyl-pro 98.6 1.9E-06 4.2E-11 77.0 14.8 139 205-359 210-356 (397)
170 PRK10803 tol-pal system protei 98.6 2.7E-06 5.9E-11 74.5 15.4 103 120-233 144-247 (263)
171 COG4105 ComL DNA uptake lipopr 98.6 4.6E-05 1E-09 64.4 21.9 172 118-310 34-227 (254)
172 PRK10803 tol-pal system protei 98.6 3.2E-06 6.9E-11 74.1 15.8 104 246-359 143-247 (263)
173 PF08631 SPO22: Meiosis protei 98.6 0.00031 6.8E-09 62.9 28.6 254 173-443 4-274 (278)
174 KOG1464 COP9 signalosome, subu 98.6 2.9E-05 6.2E-10 65.4 19.6 243 175-429 40-286 (440)
175 KOG3081 Vesicle coat complex C 98.5 0.00016 3.4E-09 61.1 23.4 252 124-443 14-269 (299)
176 cd00189 TPR Tetratricopeptide 98.5 1.4E-06 3E-11 64.1 10.7 96 375-486 2-97 (100)
177 KOG4555 TPR repeat-containing 98.5 1.6E-05 3.5E-10 58.8 15.3 99 121-232 46-144 (175)
178 cd00189 TPR Tetratricopeptide 98.5 1.2E-06 2.6E-11 64.5 10.0 96 247-358 2-97 (100)
179 KOG0543 FKBP-type peptidyl-pro 98.5 5.8E-06 1.3E-10 74.0 15.2 138 162-315 208-354 (397)
180 COG3898 Uncharacterized membra 98.5 0.00075 1.6E-08 60.2 27.0 262 124-443 126-391 (531)
181 COG3898 Uncharacterized membra 98.5 0.00089 1.9E-08 59.8 31.7 298 124-485 90-391 (531)
182 KOG1586 Protein required for f 98.5 0.0001 2.2E-09 60.8 19.8 193 174-401 26-223 (288)
183 COG4105 ComL DNA uptake lipopr 98.4 0.00013 2.9E-09 61.7 21.1 171 287-479 34-226 (254)
184 PF13432 TPR_16: Tetratricopep 98.4 1.8E-06 3.8E-11 58.2 8.1 59 292-358 2-60 (65)
185 PF13432 TPR_16: Tetratricopep 98.4 1.5E-06 3.2E-11 58.5 7.5 60 420-487 2-61 (65)
186 KOG4555 TPR repeat-containing 98.4 2.1E-05 4.5E-10 58.3 13.2 101 246-358 44-144 (175)
187 KOG1464 COP9 signalosome, subu 98.4 8.2E-05 1.8E-09 62.7 18.4 242 130-387 39-286 (440)
188 COG1729 Uncharacterized protei 98.4 4.5E-06 9.7E-11 71.1 11.2 102 121-233 144-245 (262)
189 PF10300 DUF3808: Protein of u 98.4 0.00076 1.6E-08 65.1 27.7 173 299-496 200-386 (468)
190 PF08631 SPO22: Meiosis protei 98.4 0.0017 3.6E-08 58.3 28.2 253 214-484 4-273 (278)
191 KOG3081 Vesicle coat complex C 98.4 0.0006 1.3E-08 57.7 22.6 246 171-482 17-266 (299)
192 COG4785 NlpI Lipoprotein NlpI, 98.4 4.4E-05 9.4E-10 62.1 15.4 203 242-485 62-265 (297)
193 COG4785 NlpI Lipoprotein NlpI, 98.4 0.00039 8.4E-09 56.8 20.6 205 198-443 60-265 (297)
194 PRK10153 DNA-binding transcrip 98.3 4.4E-05 9.6E-10 74.0 18.0 135 160-316 337-482 (517)
195 PF13512 TPR_18: Tetratricopep 98.3 2.8E-05 6.1E-10 59.7 12.7 104 119-233 11-129 (142)
196 COG1729 Uncharacterized protei 98.3 1E-05 2.3E-10 68.9 11.1 102 376-487 144-245 (262)
197 PRK15331 chaperone protein Sic 98.3 8.2E-06 1.8E-10 64.1 9.6 100 115-231 34-133 (165)
198 PRK10153 DNA-binding transcrip 98.3 6E-05 1.3E-09 73.1 17.8 131 120-274 341-482 (517)
199 PF13374 TPR_10: Tetratricopep 98.3 1.7E-06 3.6E-11 52.3 4.7 41 457-497 2-42 (42)
200 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.6E-05 7.9E-10 71.2 15.0 119 336-483 176-294 (395)
201 PRK11906 transcriptional regul 98.2 8.6E-05 1.9E-09 68.5 16.9 163 120-313 257-433 (458)
202 COG4235 Cytochrome c biogenesi 98.2 9.6E-05 2.1E-09 64.0 15.8 103 158-275 152-257 (287)
203 PRK15331 chaperone protein Sic 98.2 2.4E-05 5.2E-10 61.5 11.0 101 158-273 33-133 (165)
204 KOG2796 Uncharacterized conser 98.2 0.001 2.2E-08 56.1 20.7 186 125-358 129-315 (366)
205 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.9E-05 1.5E-09 69.4 15.4 120 167-312 174-293 (395)
206 COG4700 Uncharacterized protei 98.2 0.0011 2.3E-08 53.0 19.3 139 200-361 87-225 (251)
207 COG4235 Cytochrome c biogenesi 98.2 8E-05 1.7E-09 64.5 14.4 113 241-375 152-267 (287)
208 COG4700 Uncharacterized protei 98.2 0.00048 1E-08 54.8 16.9 136 245-404 89-224 (251)
209 PF13512 TPR_18: Tetratricopep 98.2 0.00012 2.6E-09 56.3 13.2 104 329-444 10-128 (142)
210 PRK11906 transcriptional regul 98.2 0.00016 3.4E-09 66.8 16.4 163 206-398 258-432 (458)
211 KOG2796 Uncharacterized conser 98.1 0.0014 3E-08 55.4 19.6 140 162-317 177-316 (366)
212 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.8E-05 4E-10 72.7 9.6 72 410-486 70-141 (453)
213 COG0457 NrfG FOG: TPR repeat [ 98.1 0.0061 1.3E-07 53.5 27.5 228 131-403 36-266 (291)
214 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 2.4E-05 5.1E-10 72.0 9.7 72 324-402 70-141 (453)
215 PF14559 TPR_19: Tetratricopep 98.1 1.7E-05 3.7E-10 53.9 6.8 55 128-192 1-55 (68)
216 COG0457 NrfG FOG: TPR repeat [ 98.1 0.0037 8.1E-08 54.9 23.7 231 216-488 36-267 (291)
217 PF13374 TPR_10: Tetratricopep 98.0 1.2E-05 2.6E-10 48.5 4.8 41 415-455 2-42 (42)
218 KOG1463 26S proteasome regulat 98.0 0.0086 1.9E-07 52.7 26.5 299 122-443 8-315 (411)
219 KOG4234 TPR repeat-containing 98.0 0.00013 2.9E-09 58.6 11.1 100 206-316 98-197 (271)
220 KOG4234 TPR repeat-containing 98.0 0.0003 6.4E-09 56.7 12.9 105 116-232 93-197 (271)
221 KOG2471 TPR repeat-containing 97.9 0.00053 1.2E-08 62.9 15.1 305 164-489 19-367 (696)
222 PF14559 TPR_19: Tetratricopep 97.9 4E-05 8.8E-10 52.0 6.4 53 256-316 2-54 (68)
223 PF13371 TPR_9: Tetratricopept 97.9 0.00014 3E-09 50.2 8.5 57 252-316 2-58 (73)
224 PF02259 FAT: FAT domain; Int 97.9 0.025 5.4E-07 53.2 28.2 265 169-470 5-305 (352)
225 PF04184 ST7: ST7 protein; In 97.9 0.0071 1.5E-07 56.3 21.2 129 253-399 176-321 (539)
226 PF12968 DUF3856: Domain of Un 97.9 0.0031 6.8E-08 46.1 15.0 122 287-408 7-135 (144)
227 PF12968 DUF3856: Domain of Un 97.8 0.0055 1.2E-07 44.8 16.3 118 244-362 6-133 (144)
228 PF13371 TPR_9: Tetratricopept 97.8 0.00015 3.3E-09 50.0 8.3 58 293-358 1-58 (73)
229 COG5159 RPN6 26S proteasome re 97.8 0.015 3.3E-07 49.9 25.6 230 122-361 7-238 (421)
230 KOG2610 Uncharacterized conser 97.8 0.019 4E-07 50.6 24.7 169 121-314 106-274 (491)
231 PF10300 DUF3808: Protein of u 97.8 0.035 7.6E-07 53.8 28.0 179 253-456 196-388 (468)
232 PF13281 DUF4071: Domain of un 97.8 0.014 3E-07 53.5 22.3 205 133-358 114-334 (374)
233 KOG4648 Uncharacterized conser 97.8 0.00021 4.7E-09 62.4 9.6 94 249-358 101-194 (536)
234 PF13281 DUF4071: Domain of un 97.8 0.031 6.8E-07 51.3 24.2 205 218-444 114-334 (374)
235 KOG4648 Uncharacterized conser 97.7 0.00042 9.2E-09 60.6 10.8 98 118-232 97-194 (536)
236 COG5159 RPN6 26S proteasome re 97.7 0.0066 1.4E-07 52.0 17.3 227 250-488 8-237 (421)
237 KOG2053 Mitochondrial inherita 97.7 0.073 1.6E-06 53.3 31.4 235 126-402 17-255 (932)
238 KOG0985 Vesicle coat protein c 97.7 0.027 5.9E-07 57.0 23.0 212 205-479 1106-1334(1666)
239 KOG2610 Uncharacterized conser 97.6 0.037 8.1E-07 48.8 27.4 165 169-356 110-274 (491)
240 PF09986 DUF2225: Uncharacteri 97.6 0.0018 3.9E-08 55.0 13.4 102 340-444 88-194 (214)
241 KOG2041 WD40 repeat protein [G 97.6 0.037 8.1E-07 53.7 22.9 130 158-313 688-822 (1189)
242 PF09986 DUF2225: Uncharacteri 97.6 0.0012 2.5E-08 56.1 12.1 100 175-274 90-194 (214)
243 KOG1550 Extracellular protein 97.6 0.057 1.2E-06 53.7 25.1 281 134-485 228-537 (552)
244 PF03704 BTAD: Bacterial trans 97.6 0.0037 8E-08 50.1 13.9 116 118-240 6-133 (146)
245 PF03704 BTAD: Bacterial trans 97.6 0.0035 7.7E-08 50.1 13.8 117 377-502 10-140 (146)
246 COG2976 Uncharacterized protei 97.6 0.0085 1.8E-07 48.5 15.2 99 330-444 90-188 (207)
247 PF04184 ST7: ST7 protein; In 97.6 0.018 3.9E-07 53.8 19.3 148 124-313 174-321 (539)
248 KOG4642 Chaperone-dependent E3 97.5 0.00099 2.2E-08 55.4 9.5 102 118-236 10-111 (284)
249 KOG2041 WD40 repeat protein [G 97.5 0.11 2.4E-06 50.6 28.8 32 198-229 791-822 (1189)
250 KOG4642 Chaperone-dependent E3 97.4 0.00084 1.8E-08 55.8 8.3 99 206-320 13-111 (284)
251 COG2976 Uncharacterized protei 97.4 0.03 6.4E-07 45.5 16.5 103 159-274 86-188 (207)
252 PF10602 RPN7: 26S proteasome 97.4 0.011 2.3E-07 48.8 14.5 125 309-444 18-142 (177)
253 KOG0545 Aryl-hydrocarbon recep 97.4 0.005 1.1E-07 51.5 12.3 106 203-316 178-293 (329)
254 PF13176 TPR_7: Tetratricopept 97.3 0.00064 1.4E-08 39.0 4.8 31 459-489 1-31 (36)
255 PF10602 RPN7: 26S proteasome 97.3 0.018 3.8E-07 47.5 14.9 111 283-402 32-142 (177)
256 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0043 9.3E-08 54.4 11.5 107 199-317 77-183 (390)
257 KOG0545 Aryl-hydrocarbon recep 97.3 0.0088 1.9E-07 50.1 12.5 110 116-232 176-293 (329)
258 PF13176 TPR_7: Tetratricopept 97.3 0.00093 2E-08 38.3 4.8 31 417-447 1-31 (36)
259 PF06552 TOM20_plant: Plant sp 97.2 0.0068 1.5E-07 48.5 10.2 93 134-236 7-106 (186)
260 KOG1538 Uncharacterized conser 97.2 0.27 5.7E-06 47.7 22.1 183 207-441 636-830 (1081)
261 KOG2053 Mitochondrial inherita 97.1 0.38 8.2E-06 48.5 24.1 191 214-440 20-215 (932)
262 KOG0985 Vesicle coat protein c 97.1 0.42 9E-06 49.0 23.9 220 160-439 1102-1336(1666)
263 PF12862 Apc5: Anaphase-promot 97.1 0.013 2.7E-07 42.6 10.5 82 297-382 8-90 (94)
264 PF13431 TPR_17: Tetratricopep 97.0 0.00055 1.2E-08 38.5 2.4 32 141-182 2-33 (34)
265 PF13428 TPR_14: Tetratricopep 97.0 0.0023 5E-08 38.7 5.3 42 246-295 2-43 (44)
266 KOG0551 Hsp90 co-chaperone CNS 97.0 0.01 2.2E-07 52.1 11.0 107 114-233 77-183 (390)
267 PF12862 Apc5: Anaphase-promot 97.0 0.013 2.9E-07 42.5 10.2 81 383-465 8-89 (94)
268 PF13428 TPR_14: Tetratricopep 97.0 0.0025 5.4E-08 38.5 5.2 42 416-465 2-43 (44)
269 PF13431 TPR_17: Tetratricopep 97.0 0.00099 2.1E-08 37.5 2.9 32 268-307 2-33 (34)
270 PF00515 TPR_1: Tetratricopept 96.9 0.0027 5.8E-08 35.8 4.7 30 245-274 1-30 (34)
271 PF00515 TPR_1: Tetratricopept 96.9 0.0025 5.3E-08 36.0 4.5 30 458-487 2-31 (34)
272 KOG1463 26S proteasome regulat 96.9 0.29 6.3E-06 43.5 29.1 260 119-398 49-312 (411)
273 COG3118 Thioredoxin domain-con 96.9 0.28 6E-06 43.0 18.5 131 119-274 135-265 (304)
274 PF07719 TPR_2: Tetratricopept 96.8 0.0039 8.5E-08 35.1 4.5 30 458-487 2-31 (34)
275 PF06552 TOM20_plant: Plant sp 96.7 0.032 6.9E-07 44.8 10.8 77 200-277 22-105 (186)
276 PF07719 TPR_2: Tetratricopept 96.7 0.0052 1.1E-07 34.6 4.7 29 246-274 2-30 (34)
277 KOG1550 Extracellular protein 96.7 0.63 1.4E-05 46.5 22.1 252 178-487 228-505 (552)
278 PF05843 Suf: Suppressor of fo 96.7 0.038 8.3E-07 49.6 12.4 134 289-445 3-137 (280)
279 KOG4814 Uncharacterized conser 96.7 0.71 1.5E-05 44.8 32.8 104 120-234 356-459 (872)
280 KOG1538 Uncharacterized conser 96.6 0.31 6.8E-06 47.2 18.1 189 167-400 637-831 (1081)
281 PF13181 TPR_8: Tetratricopept 96.6 0.0057 1.2E-07 34.4 4.3 31 458-488 2-32 (34)
282 KOG3783 Uncharacterized conser 96.5 0.8 1.7E-05 43.7 24.5 227 158-403 263-521 (546)
283 COG3118 Thioredoxin domain-con 96.5 0.1 2.2E-06 45.6 13.0 149 334-509 139-287 (304)
284 PF10579 Rapsyn_N: Rapsyn N-te 96.5 0.072 1.6E-06 36.1 9.3 70 119-195 7-76 (80)
285 PF05843 Suf: Suppressor of fo 96.4 0.096 2.1E-06 47.1 13.4 134 247-403 3-137 (280)
286 PF13181 TPR_8: Tetratricopept 96.4 0.01 2.2E-07 33.3 4.6 30 246-275 2-31 (34)
287 PF02259 FAT: FAT domain; Int 96.1 1.2 2.6E-05 41.8 28.5 130 242-385 143-304 (352)
288 PF10516 SHNi-TPR: SHNi-TPR; 96.1 0.02 4.3E-07 32.9 4.7 36 458-493 2-37 (38)
289 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.28 6.1E-06 33.3 9.5 66 334-406 11-76 (80)
290 COG4649 Uncharacterized protei 95.7 0.83 1.8E-05 36.6 13.6 96 377-485 98-195 (221)
291 PF04910 Tcf25: Transcriptiona 95.6 1.5 3.2E-05 41.0 17.4 152 199-360 36-224 (360)
292 PF04910 Tcf25: Transcriptiona 95.6 1.8 3.9E-05 40.4 17.9 156 324-489 35-225 (360)
293 KOG0376 Serine-threonine phosp 95.6 0.026 5.7E-07 52.5 5.7 95 121-232 7-101 (476)
294 COG0790 FOG: TPR repeat, SEL1 95.5 1.9 4.1E-05 39.1 21.7 181 255-485 51-265 (292)
295 PF10516 SHNi-TPR: SHNi-TPR; 95.5 0.05 1.1E-06 31.3 4.5 36 416-451 2-37 (38)
296 KOG0376 Serine-threonine phosp 95.4 0.043 9.3E-07 51.1 6.5 94 249-358 8-101 (476)
297 KOG1914 mRNA cleavage and poly 95.4 2.7 6E-05 40.3 28.0 62 119-191 21-82 (656)
298 COG0790 FOG: TPR repeat, SEL1 95.3 2.2 4.8E-05 38.7 21.7 167 128-343 51-236 (292)
299 PF00244 14-3-3: 14-3-3 protei 95.2 1.9 4.1E-05 37.5 16.0 185 120-320 3-202 (236)
300 KOG4322 Anaphase-promoting com 95.1 2.7 5.9E-05 39.0 22.6 198 239-443 267-470 (482)
301 PF09613 HrpB1_HrpK: Bacterial 95.0 0.33 7.2E-06 38.5 9.5 91 113-220 5-95 (160)
302 PF13174 TPR_6: Tetratricopept 95.0 0.042 9.1E-07 30.4 3.4 29 459-487 2-30 (33)
303 KOG1308 Hsp70-interacting prot 94.9 0.017 3.8E-07 51.0 2.4 96 120-232 116-211 (377)
304 PF11817 Foie-gras_1: Foie gra 94.8 2.6 5.7E-05 37.1 22.0 188 291-484 14-245 (247)
305 PF13174 TPR_6: Tetratricopept 94.6 0.081 1.8E-06 29.2 4.0 29 205-233 2-30 (33)
306 PF08424 NRDE-2: NRDE-2, neces 94.4 4 8.7E-05 37.6 20.0 149 282-445 14-184 (321)
307 PF11207 DUF2989: Protein of u 94.2 2.8 6.2E-05 34.8 13.7 78 218-307 121-198 (203)
308 PF12739 TRAPPC-Trs85: ER-Golg 94.2 5.6 0.00012 38.2 18.9 179 163-361 209-402 (414)
309 KOG3783 Uncharacterized conser 94.1 5.8 0.00013 38.2 30.9 254 209-487 237-521 (546)
310 KOG1308 Hsp70-interacting prot 94.0 0.048 1E-06 48.4 3.1 89 254-358 123-211 (377)
311 PF14561 TPR_20: Tetratricopep 93.9 0.84 1.8E-05 32.6 8.7 36 158-193 18-53 (90)
312 PF04781 DUF627: Protein of un 93.8 2 4.4E-05 31.7 11.3 100 124-230 2-105 (111)
313 PF12739 TRAPPC-Trs85: ER-Golg 93.7 6.9 0.00015 37.6 19.1 178 247-446 210-401 (414)
314 PF09613 HrpB1_HrpK: Bacterial 93.6 2 4.4E-05 34.2 11.0 89 242-346 7-95 (160)
315 KOG0890 Protein kinase of the 93.4 19 0.0004 41.6 28.5 110 325-446 1666-1786(2382)
316 KOG0687 26S proteasome regulat 93.4 4.6 0.0001 36.1 13.7 128 266-404 85-212 (393)
317 PF11207 DUF2989: Protein of u 93.3 3 6.4E-05 34.7 11.9 81 257-349 118-198 (203)
318 KOG1914 mRNA cleavage and poly 93.2 8.7 0.00019 37.1 23.2 135 247-404 368-503 (656)
319 COG5187 RPN7 26S proteasome re 93.2 4.5 9.8E-05 35.5 13.1 132 262-404 92-223 (412)
320 TIGR02561 HrpB1_HrpK type III 93.1 1 2.2E-05 35.2 8.4 91 113-220 5-95 (153)
321 KOG2114 Vacuolar assembly/sort 92.9 7.4 0.00016 39.6 15.9 48 185-232 350-397 (933)
322 KOG4507 Uncharacterized conser 92.8 0.38 8.1E-06 46.2 6.9 91 253-358 615-705 (886)
323 smart00028 TPR Tetratricopepti 92.7 0.17 3.6E-06 27.3 3.1 29 458-486 2-30 (34)
324 smart00028 TPR Tetratricopepti 92.3 0.25 5.3E-06 26.6 3.5 29 416-444 2-30 (34)
325 PF14853 Fis1_TPR_C: Fis1 C-te 92.2 1.5 3.3E-05 27.5 7.0 29 246-274 2-30 (53)
326 PF14853 Fis1_TPR_C: Fis1 C-te 92.0 2 4.3E-05 27.0 7.8 28 331-358 3-30 (53)
327 PF08424 NRDE-2: NRDE-2, neces 92.0 10 0.00022 35.0 18.4 128 134-275 47-184 (321)
328 PF11817 Foie-gras_1: Foie gra 91.9 8.4 0.00018 33.9 23.8 187 206-398 13-243 (247)
329 KOG4507 Uncharacterized conser 91.8 0.45 9.8E-06 45.6 6.2 96 206-316 610-705 (886)
330 PF07721 TPR_4: Tetratricopept 91.8 0.26 5.7E-06 25.5 2.8 24 459-482 3-26 (26)
331 COG4649 Uncharacterized protei 91.8 5.9 0.00013 32.0 15.4 130 124-273 64-195 (221)
332 KOG2908 26S proteasome regulat 91.7 9.6 0.00021 34.4 13.6 91 128-222 85-176 (380)
333 PF04053 Coatomer_WDAD: Coatom 91.5 7.5 0.00016 37.5 14.2 157 173-399 272-428 (443)
334 PF07721 TPR_4: Tetratricopept 91.4 0.32 7E-06 25.2 2.9 24 288-311 2-25 (26)
335 KOG0686 COP9 signalosome, subu 91.3 4.4 9.5E-05 37.4 11.5 105 328-441 149-255 (466)
336 PF00244 14-3-3: 14-3-3 protei 91.3 9.3 0.0002 33.3 22.6 62 431-492 142-204 (236)
337 KOG0686 COP9 signalosome, subu 91.1 4.4 9.6E-05 37.4 11.3 108 200-314 147-256 (466)
338 PF08626 TRAPPC9-Trs120: Trans 90.9 23 0.0005 39.4 18.9 154 244-403 241-475 (1185)
339 KOG0687 26S proteasome regulat 90.9 12 0.00026 33.7 14.9 128 138-275 84-211 (393)
340 PF07079 DUF1347: Protein of u 90.7 15 0.00033 34.7 35.9 138 121-275 9-158 (549)
341 PF15015 NYD-SP12_N: Spermatog 90.7 5.5 0.00012 37.0 11.5 104 207-318 180-293 (569)
342 TIGR02561 HrpB1_HrpK type III 90.3 5.9 0.00013 31.1 9.9 86 244-345 9-94 (153)
343 smart00101 14_3_3 14-3-3 homol 90.3 12 0.00025 32.7 20.8 184 291-489 5-203 (244)
344 KOG4322 Anaphase-promoting com 90.1 17 0.00036 34.1 23.8 194 283-485 269-470 (482)
345 COG3629 DnrI DNA-binding trans 90.0 9.9 0.00021 33.8 12.4 75 414-496 152-226 (280)
346 PF09670 Cas_Cas02710: CRISPR- 90.0 17 0.00038 34.3 17.1 140 119-277 132-273 (379)
347 KOG2114 Vacuolar assembly/sort 89.9 7.8 0.00017 39.5 12.7 48 310-358 350-397 (933)
348 PF10952 DUF2753: Protein of u 89.9 6.9 0.00015 29.4 10.5 74 248-321 4-84 (140)
349 PRK13184 pknD serine/threonine 89.9 5.7 0.00012 42.0 12.6 145 337-495 483-629 (932)
350 KOG0508 Ankyrin repeat protein 89.7 0.69 1.5E-05 43.1 5.3 73 397-469 319-391 (615)
351 PF04781 DUF627: Protein of un 89.6 6.8 0.00015 29.0 10.9 101 168-273 2-106 (111)
352 COG5187 RPN7 26S proteasome re 89.3 15 0.00032 32.5 16.3 131 135-275 92-222 (412)
353 PF04053 Coatomer_WDAD: Coatom 89.2 17 0.00037 35.1 14.4 50 125-185 268-318 (443)
354 PF04190 DUF410: Protein of un 89.0 16 0.00034 32.5 24.3 109 114-228 6-115 (260)
355 KOG2581 26S proteasome regulat 89.0 19 0.00042 33.5 20.2 144 126-275 134-277 (493)
356 KOG0890 Protein kinase of the 89.0 52 0.0011 38.4 29.8 132 345-489 1645-1787(2382)
357 COG3629 DnrI DNA-binding trans 89.0 16 0.00034 32.6 12.9 76 243-326 151-226 (280)
358 COG3947 Response regulator con 88.8 13 0.00028 32.9 11.8 72 416-495 280-351 (361)
359 KOG3824 Huntingtin interacting 88.6 1.3 2.7E-05 39.1 5.8 67 116-192 114-180 (472)
360 PRK10941 hypothetical protein; 88.5 8.8 0.00019 34.1 11.2 76 243-331 179-254 (269)
361 PF10952 DUF2753: Protein of u 88.4 9 0.00019 28.8 10.7 73 206-278 4-83 (140)
362 TIGR03504 FimV_Cterm FimV C-te 88.3 1.5 3.3E-05 26.2 4.3 25 419-443 3-27 (44)
363 PRK10941 hypothetical protein; 87.8 12 0.00026 33.3 11.5 62 121-192 184-245 (269)
364 PF10255 Paf67: RNA polymerase 87.7 1.2 2.7E-05 41.6 5.7 74 375-448 124-197 (404)
365 PF15015 NYD-SP12_N: Spermatog 87.6 14 0.0003 34.5 11.8 104 379-490 182-295 (569)
366 cd02682 MIT_AAA_Arch MIT: doma 87.2 7.4 0.00016 26.5 8.2 40 118-157 6-45 (75)
367 PF08626 TRAPPC9-Trs120: Trans 87.1 26 0.00057 39.0 16.1 155 287-445 242-475 (1185)
368 PRK14707 hypothetical protein; 86.8 68 0.0015 37.2 21.8 315 167-490 836-1158(2710)
369 PF09670 Cas_Cas02710: CRISPR- 86.8 29 0.00063 32.9 16.1 64 164-232 133-198 (379)
370 KOG4014 Uncharacterized conser 86.6 16 0.00035 29.8 12.4 165 160-362 32-237 (248)
371 PF10255 Paf67: RNA polymerase 86.5 1.6 3.4E-05 41.0 5.6 74 247-320 124-197 (404)
372 TIGR03504 FimV_Cterm FimV C-te 86.5 1.5 3.3E-05 26.2 3.6 25 461-485 3-27 (44)
373 KOG0508 Ankyrin repeat protein 86.3 2.6 5.7E-05 39.5 6.7 139 158-299 241-391 (615)
374 KOG3807 Predicted membrane pro 86.3 25 0.00054 31.7 16.1 57 253-319 192-248 (556)
375 PF13041 PPR_2: PPR repeat fam 86.3 4.4 9.5E-05 24.9 6.0 28 416-443 4-31 (50)
376 PF08311 Mad3_BUB1_I: Mad3/BUB 85.6 14 0.00031 28.4 11.1 86 387-484 40-126 (126)
377 cd02682 MIT_AAA_Arch MIT: doma 85.6 8.3 0.00018 26.3 7.2 42 330-371 7-48 (75)
378 PRK14707 hypothetical protein; 85.5 79 0.0017 36.8 21.9 316 167-490 878-1200(2710)
379 PF12854 PPR_1: PPR repeat 85.4 2.4 5.2E-05 23.6 4.0 26 329-354 7-32 (34)
380 KOG2422 Uncharacterized conser 85.1 41 0.00088 33.1 15.0 179 300-488 251-450 (665)
381 PF12854 PPR_1: PPR repeat 85.1 2.8 6.1E-05 23.3 4.2 27 286-312 6-32 (34)
382 PF13041 PPR_2: PPR repeat fam 85.0 4.9 0.00011 24.7 5.8 30 245-274 3-32 (50)
383 COG3947 Response regulator con 84.1 30 0.00065 30.8 11.7 73 246-326 280-352 (361)
384 KOG2561 Adaptor protein NUB1, 83.5 40 0.00087 31.8 12.7 116 205-320 165-300 (568)
385 KOG1258 mRNA processing protei 83.4 49 0.0011 32.7 33.8 129 325-478 293-421 (577)
386 COG2178 Predicted RNA-binding 83.3 25 0.00053 29.2 11.2 108 166-279 33-155 (204)
387 PRK15180 Vi polysaccharide bio 83.2 7.1 0.00015 37.0 8.1 130 120-274 291-420 (831)
388 smart00101 14_3_3 14-3-3 homol 82.7 32 0.0007 30.1 24.8 183 121-317 4-201 (244)
389 KOG4814 Uncharacterized conser 82.5 56 0.0012 32.7 31.6 106 203-318 354-459 (872)
390 KOG4563 Cell cycle-regulated h 82.4 7.4 0.00016 35.5 7.6 69 113-183 36-104 (400)
391 KOG4521 Nuclear pore complex, 81.8 81 0.0018 34.1 19.2 183 247-444 922-1132(1480)
392 KOG2561 Adaptor protein NUB1, 81.8 20 0.00044 33.7 10.2 118 375-492 165-302 (568)
393 PF01535 PPR: PPR repeat; Int 81.8 2.8 6.1E-05 22.2 3.3 27 417-443 2-28 (31)
394 PF04190 DUF410: Protein of un 81.7 37 0.00081 30.1 24.0 204 211-429 18-242 (260)
395 COG4976 Predicted methyltransf 81.1 3.2 7E-05 35.1 4.7 55 212-274 4-58 (287)
396 KOG1497 COP9 signalosome, subu 80.9 43 0.00093 30.2 18.5 110 285-399 101-210 (399)
397 KOG3364 Membrane protein invol 80.7 24 0.00053 27.3 9.9 66 286-358 31-100 (149)
398 cd02681 MIT_calpain7_1 MIT: do 80.7 16 0.00034 25.1 8.8 35 117-151 5-39 (76)
399 cd02683 MIT_1 MIT: domain cont 80.5 16 0.00035 25.1 8.0 35 118-152 6-40 (77)
400 COG4976 Predicted methyltransf 80.4 3.8 8.3E-05 34.7 4.9 56 127-192 4-59 (287)
401 KOG3024 Uncharacterized conser 79.9 43 0.00093 29.7 11.7 111 114-229 42-153 (312)
402 KOG3824 Huntingtin interacting 79.4 6 0.00013 35.1 5.9 57 169-232 123-179 (472)
403 KOG2908 26S proteasome regulat 79.1 51 0.0011 30.1 15.3 94 172-267 85-179 (380)
404 PF01535 PPR: PPR repeat; Int 78.9 3.8 8.3E-05 21.7 3.3 27 289-315 2-28 (31)
405 smart00745 MIT Microtubule Int 78.4 12 0.00025 25.8 6.2 33 463-495 14-46 (77)
406 KOG4014 Uncharacterized conser 78.0 37 0.0008 27.9 12.8 152 309-494 50-241 (248)
407 PF04212 MIT: MIT (microtubule 77.6 8 0.00017 25.9 5.1 34 461-494 9-42 (69)
408 KOG4563 Cell cycle-regulated h 77.6 7.1 0.00015 35.5 6.0 62 206-267 44-105 (400)
409 PF14561 TPR_20: Tetratricopep 77.2 24 0.00051 25.2 9.0 33 411-443 18-50 (90)
410 TIGR00756 PPR pentatricopeptid 77.2 5.6 0.00012 21.6 3.8 27 417-443 2-28 (35)
411 cd02679 MIT_spastin MIT: domai 76.2 21 0.00046 24.7 6.7 35 417-451 10-44 (79)
412 PRK13184 pknD serine/threonine 76.0 1.2E+02 0.0026 32.7 28.9 100 126-233 483-582 (932)
413 KOG1497 COP9 signalosome, subu 75.2 64 0.0014 29.2 18.9 110 328-442 102-211 (399)
414 KOG4521 Nuclear pore complex, 75.1 1.3E+02 0.0028 32.7 17.4 186 289-489 922-1135(1480)
415 TIGR00756 PPR pentatricopeptid 74.8 7.6 0.00017 21.1 3.9 27 289-315 2-28 (35)
416 PF07720 TPR_3: Tetratricopept 72.7 15 0.00033 20.8 4.5 23 459-481 3-25 (36)
417 cd02683 MIT_1 MIT: domain cont 72.2 29 0.00063 23.9 7.0 29 334-362 11-39 (77)
418 cd02678 MIT_VPS4 MIT: domain c 72.1 28 0.00061 23.7 8.2 35 118-152 6-40 (75)
419 PF13812 PPR_3: Pentatricopept 72.1 11 0.00024 20.4 4.1 27 417-443 3-29 (34)
420 PF05053 Menin: Menin; InterP 71.4 1.1E+02 0.0024 30.2 13.4 70 375-447 279-350 (618)
421 KOG0276 Vesicle coat complex C 70.6 28 0.00061 34.3 8.4 120 332-485 617-749 (794)
422 PF13812 PPR_3: Pentatricopept 70.5 14 0.00031 19.9 4.3 27 331-357 3-29 (34)
423 PF04212 MIT: MIT (microtubule 70.4 29 0.00063 23.1 8.6 34 120-153 7-40 (69)
424 PF05053 Menin: Menin; InterP 70.1 1.2E+02 0.0026 30.0 13.4 73 287-362 277-351 (618)
425 KOG2063 Vacuolar assembly/sort 70.0 1E+02 0.0023 32.6 12.8 185 289-485 506-712 (877)
426 smart00745 MIT Microtubule Int 69.9 32 0.0007 23.5 8.6 35 118-152 8-42 (77)
427 PF07720 TPR_3: Tetratricopept 69.7 18 0.00039 20.5 4.6 24 163-186 2-25 (36)
428 cd02681 MIT_calpain7_1 MIT: do 69.6 33 0.00072 23.5 7.8 31 418-448 9-39 (76)
429 KOG2422 Uncharacterized conser 68.8 1.3E+02 0.0028 29.9 16.7 176 174-360 250-450 (665)
430 cd02679 MIT_spastin MIT: domai 68.2 22 0.00047 24.6 5.4 35 461-495 12-46 (79)
431 cd02656 MIT MIT: domain contai 67.8 31 0.00067 23.5 6.3 33 463-495 12-44 (75)
432 PF07079 DUF1347: Protein of u 67.5 1.2E+02 0.0026 29.1 29.8 138 283-440 375-520 (549)
433 KOG1310 WD40 repeat protein [G 67.5 34 0.00073 33.2 8.1 91 208-314 379-472 (758)
434 KOG3364 Membrane protein invol 67.4 57 0.0012 25.4 12.4 67 161-232 31-100 (149)
435 KOG1310 WD40 repeat protein [G 67.2 42 0.00091 32.6 8.6 97 117-230 373-472 (758)
436 PF04097 Nic96: Nup93/Nic96; 66.3 1.6E+02 0.0035 30.2 19.0 30 327-356 412-441 (613)
437 COG3014 Uncharacterized protei 64.4 1.2E+02 0.0025 27.9 16.0 29 291-319 62-90 (449)
438 PF10373 EST1_DNA_bind: Est1 D 63.6 1.1E+02 0.0024 27.3 12.8 62 264-341 1-62 (278)
439 COG4455 ImpE Protein of avirul 63.4 65 0.0014 27.5 8.1 58 125-192 8-65 (273)
440 KOG3024 Uncharacterized conser 63.0 1.1E+02 0.0024 27.2 13.6 136 126-271 14-153 (312)
441 cd02684 MIT_2 MIT: domain cont 62.9 44 0.00095 22.9 6.1 31 464-494 13-43 (75)
442 PRK15180 Vi polysaccharide bio 62.2 34 0.00074 32.7 7.1 121 298-444 300-420 (831)
443 PF08311 Mad3_BUB1_I: Mad3/BUB 62.1 71 0.0015 24.6 12.7 86 217-314 40-126 (126)
444 KOG2581 26S proteasome regulat 61.8 1.5E+02 0.0032 28.1 22.8 140 172-317 136-277 (493)
445 cd02656 MIT MIT: domain contai 61.7 48 0.001 22.5 8.4 33 120-152 8-40 (75)
446 PHA02537 M terminase endonucle 61.7 1.1E+02 0.0023 26.6 10.5 108 126-234 91-209 (230)
447 PF07163 Pex26: Pex26 protein; 61.6 1.2E+02 0.0026 27.1 13.1 140 246-397 36-182 (309)
448 PF10373 EST1_DNA_bind: Est1 D 60.9 71 0.0015 28.5 9.2 62 222-299 1-62 (278)
449 PF07163 Pex26: Pex26 protein; 60.0 1.3E+02 0.0028 26.9 14.2 135 205-353 37-182 (309)
450 cd02680 MIT_calpain7_2 MIT: do 59.4 27 0.00059 23.9 4.5 32 119-150 7-38 (75)
451 PF10938 YfdX: YfdX protein; 58.7 45 0.00097 26.8 6.5 111 333-443 6-145 (155)
452 KOG0276 Vesicle coat complex C 58.0 98 0.0021 30.8 9.4 49 255-316 647-695 (794)
453 PF09311 Rab5-bind: Rabaptin-l 57.9 28 0.0006 28.9 5.4 47 451-497 134-180 (181)
454 KOG0128 RNA-binding protein SA 57.1 2.5E+02 0.0055 29.4 22.0 245 132-401 93-340 (881)
455 PF09205 DUF1955: Domain of un 57.0 91 0.002 24.2 7.8 60 121-190 88-148 (161)
456 PHA02537 M terminase endonucle 56.8 1.3E+02 0.0029 26.0 9.9 102 172-275 93-208 (230)
457 PF10858 DUF2659: Protein of u 56.7 1E+02 0.0023 24.8 14.1 129 343-485 71-199 (220)
458 KOG4279 Serine/threonine prote 56.1 1.1E+02 0.0024 31.3 9.7 181 242-443 198-394 (1226)
459 cd02677 MIT_SNX15 MIT: domain 56.0 63 0.0014 22.1 7.8 35 118-152 6-40 (75)
460 COG5107 RNA14 Pre-mRNA 3'-end 55.4 2E+02 0.0043 27.7 20.4 83 339-437 442-524 (660)
461 PF14863 Alkyl_sulf_dimr: Alky 55.0 57 0.0012 25.7 6.3 48 119-176 71-118 (141)
462 COG3014 Uncharacterized protei 54.9 1.7E+02 0.0038 26.9 16.0 27 166-192 62-88 (449)
463 cd02678 MIT_VPS4 MIT: domain c 53.6 69 0.0015 21.8 7.7 30 420-449 11-40 (75)
464 COG2912 Uncharacterized conser 53.3 1.4E+02 0.0031 26.4 9.0 66 117-192 179-245 (269)
465 cd02677 MIT_SNX15 MIT: domain 53.3 71 0.0015 21.9 5.9 28 467-494 16-43 (75)
466 cd02684 MIT_2 MIT: domain cont 53.1 71 0.0015 21.8 8.4 35 118-152 6-40 (75)
467 KOG2063 Vacuolar assembly/sort 52.0 2.6E+02 0.0056 29.9 12.0 183 164-357 506-712 (877)
468 PF06957 COPI_C: Coatomer (COP 51.5 1.8E+02 0.0039 27.9 10.1 33 116-148 202-234 (422)
469 KOG1258 mRNA processing protei 49.6 2.8E+02 0.0061 27.7 34.1 314 129-485 52-394 (577)
470 COG3914 Spy Predicted O-linked 49.6 2.8E+02 0.0061 27.7 11.6 111 322-445 61-172 (620)
471 KOG1920 IkappaB kinase complex 48.5 4.1E+02 0.0089 29.3 24.8 63 335-400 958-1026(1265)
472 KOG1920 IkappaB kinase complex 48.1 4.2E+02 0.0091 29.2 23.2 63 293-356 958-1026(1265)
473 COG3914 Spy Predicted O-linked 47.2 3.1E+02 0.0067 27.5 12.3 109 238-360 61-173 (620)
474 PF09311 Rab5-bind: Rabaptin-l 46.6 77 0.0017 26.3 6.2 47 409-455 134-180 (181)
475 PF14689 SPOB_a: Sensor_kinase 44.4 88 0.0019 20.4 5.9 39 111-149 16-54 (62)
476 KOG3807 Predicted membrane pro 44.1 2.6E+02 0.0056 25.7 17.5 57 124-192 190-246 (556)
477 KOG2396 HAT (Half-A-TPR) repea 44.0 3.2E+02 0.007 26.8 11.0 79 161-251 104-183 (568)
478 PF10858 DUF2659: Protein of u 43.3 1.8E+02 0.0038 23.6 16.1 103 333-443 97-199 (220)
479 TIGR02710 CRISPR-associated pr 42.1 3.1E+02 0.0067 26.0 14.6 58 168-227 136-195 (380)
480 smart00386 HAT HAT (Half-A-TPR 39.7 58 0.0013 16.9 3.7 16 132-147 1-16 (33)
481 KOG2396 HAT (Half-A-TPR) repea 39.6 2.1E+02 0.0046 28.0 8.4 79 119-211 106-185 (568)
482 TIGR02710 CRISPR-associated pr 39.5 3.4E+02 0.0074 25.8 15.4 58 335-397 136-195 (380)
483 PF08969 USP8_dimer: USP8 dime 39.0 67 0.0014 24.2 4.5 38 458-497 39-76 (115)
484 cd09034 BRO1_Alix_like Protein 37.7 3.4E+02 0.0074 25.3 12.9 35 457-491 251-285 (345)
485 COG2178 Predicted RNA-binding 37.6 2.5E+02 0.0053 23.6 14.9 118 332-456 32-162 (204)
486 smart00671 SEL1 Sel1-like repe 36.1 75 0.0016 17.2 3.8 27 459-485 3-33 (36)
487 COG2912 Uncharacterized conser 35.8 3.2E+02 0.0069 24.4 9.0 67 243-317 179-245 (269)
488 cd09239 BRO1_HD-PTP_like Prote 35.3 3.9E+02 0.0085 25.2 11.3 30 459-488 254-283 (361)
489 COG4455 ImpE Protein of avirul 34.8 3E+02 0.0065 23.7 8.2 73 295-382 9-81 (273)
490 KOG2709 Uncharacterized conser 32.7 1.6E+02 0.0036 27.8 6.4 32 416-447 23-54 (560)
491 PF04097 Nic96: Nup93/Nic96; 29.6 6.4E+02 0.014 26.0 22.0 18 126-143 266-283 (613)
492 COG5600 Transcription-associat 29.5 4E+02 0.0087 25.1 8.2 67 166-235 181-252 (413)
493 KOG0546 HSP90 co-chaperone CPR 29.1 1.5E+02 0.0032 27.5 5.5 101 250-358 227-338 (372)
494 TIGR01716 RGG_Cterm transcript 29.1 3.6E+02 0.0079 22.9 9.5 101 344-446 99-199 (220)
495 KOG2582 COP9 signalosome, subu 28.5 2.4E+02 0.0052 26.3 6.7 109 328-442 101-210 (422)
496 cd02680 MIT_calpain7_2 MIT: do 28.4 2E+02 0.0043 19.7 8.9 23 425-447 16-38 (75)
497 KOG0292 Vesicle coat complex C 28.3 7.7E+02 0.017 26.5 10.9 113 117-233 990-1114(1202)
498 cd09034 BRO1_Alix_like Protein 28.3 4.9E+02 0.011 24.2 13.3 18 217-234 135-152 (345)
499 smart00777 Mad3_BUB1_I Mad3/BU 27.2 2.9E+02 0.0063 21.3 13.0 80 391-482 44-124 (125)
500 PF12753 Nro1: Nuclear pore co 26.6 2.9E+02 0.0063 26.2 7.0 55 222-278 330-388 (404)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=2.7e-33 Score=259.96 Aligned_cols=311 Identities=28% Similarity=0.372 Sum_probs=293.3
Q ss_pred HHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHH
Q 010446 188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267 (510)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 267 (510)
........+...|....+...++..|..+|+|++|+..+++++++..+..+.+++.+......+|.+|..++++.+|+.+
T Consensus 184 ~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~l 263 (508)
T KOG1840|consen 184 LDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNL 263 (508)
T ss_pred HHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33334455778888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHH
Q 010446 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE 347 (510)
Q Consensus 268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 347 (510)
|++|+.+.+...|+++|..+.++.+||..|...|++++|..++++|+++.++..+..++.+...+.+++.++...+++++
T Consensus 264 y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee 343 (508)
T KOG1840|consen 264 YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE 343 (508)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010446 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 427 (510)
Q Consensus 348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 427 (510)
|..++++++++... ..+++++.++.++.+||.+|..+|++++|.+++++|+.+.++..+..++.....+++||..|.+
T Consensus 344 a~~l~q~al~i~~~--~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 344 AKKLLQKALKIYLD--APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE 421 (508)
T ss_pred HHHHHHHHHHHHHh--hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence 99999999999985 3678888899999999999999999999999999999999999888899999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 010446 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLL 501 (510)
Q Consensus 428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 501 (510)
.+++.+|...|.++..+. +..|+++|++...+.+|+.+|..+|++++|.++.++++...++.+|..++.....
T Consensus 422 ~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
T KOG1840|consen 422 LKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDE 494 (508)
T ss_pred hcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHH
Confidence 999999999999999999 8899999999999999999999999999999999999999999999888765543
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-35 Score=262.60 Aligned_cols=273 Identities=17% Similarity=0.228 Sum_probs=224.7
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (510)
.|..+.+|.++|.++..+|+...|+..|+++..+. |....+|.+||.+|...+.|++|+..|.+|+.+
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----- 281 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----- 281 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----
Confidence 44555566677777777777777777777776553 666677888888888888888888888888765
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
.|..+.++.++|.+|+.+|..+-|+..|++++++ .|....++++||..+...|+..+|+.+|.+++.+.
T Consensus 282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 3566777888888888888888888888888876 67778889999999999999999999999998863
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (510)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (510)
|..+.+++|||.+|..+|.+++|..+|.++++.. +..+.+..+||.+|..+|++++|+..|+
T Consensus 351 --------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~----------p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 351 --------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF----------PEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred --------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC----------hhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 4556788899999999999999999999998873 3446677899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 010446 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (510)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (510)
+++.+ .|..+.++.++|..|..+|+.+.|+.+|.+|+.+ +|..+++..+||.+|...|+..+|+
T Consensus 413 ealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 413 EALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHH
Confidence 98886 5778889999999999999999999999999884 7888999999999999999999999
Q ss_pred HHHHHHHHHH
Q 010446 478 KLVLEALYIR 487 (510)
Q Consensus 478 ~~~~~al~~~ 487 (510)
..|++++.+.
T Consensus 477 ~sY~~aLklk 486 (966)
T KOG4626|consen 477 QSYRTALKLK 486 (966)
T ss_pred HHHHHHHccC
Confidence 9999998855
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-34 Score=260.10 Aligned_cols=307 Identities=19% Similarity=0.248 Sum_probs=245.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc-----
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL----- 195 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----- 195 (510)
+-+.+..+...|++++|+.+|+.++++ .|+..+++.++|.++...|+.+.|...|..++++...+
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel----------~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s 188 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIEL----------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS 188 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhc----------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence 344556666666666666666666665 55566666666666666666666666555555543100
Q ss_pred ----------------------CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010446 196 ----------------------KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253 (510)
Q Consensus 196 ----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 253 (510)
-...|..+.+|.+||.++..+|+...|+.+|++|+.+ +|....+|.++|.
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGn 260 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGN 260 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHH
Confidence 0011444555677777777777777777777777765 4677888999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 010446 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC 333 (510)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 333 (510)
+|...+.+++|+.+|.+|+.+ .|..+.++.++|.+|.++|..+-|+..|++++++ .|....+++
T Consensus 261 V~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~ 324 (966)
T KOG4626|consen 261 VYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYN 324 (966)
T ss_pred HHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHh
Confidence 999999999999999999876 6777888999999999999999999999999884 577888999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010446 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413 (510)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (510)
|+|..+-..|+..+|+.+|.+++.+. +++ +.+.++||.+|.++|++++|..+|++++++ .|.
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~-------p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~ 386 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLC-------PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPE 386 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhC-------Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------Chh
Confidence 99999999999999999999999983 334 456799999999999999999999999986 477
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
.+.+.++||.+|.++|++++|+.+|++++.| .|..++++.++|.+|..+|+...|+++|.+|+.+.
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 7889999999999999999999999999986 68899999999999999999999999999998754
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=2.7e-31 Score=246.64 Aligned_cols=308 Identities=23% Similarity=0.330 Sum_probs=285.0
Q ss_pred CCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh-hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV-DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
+...|....+...++..|...|+|++|+..++.++++. +..+..++.+...+..+|.+|..++++.+|+..|++|+.+.
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 55678888888889999999999999999999998875 44577889999988889999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (510)
Q Consensus 234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (510)
+..+|.++|.++.++.+||..|...|++++|..++++|+++.++..+..++.....+.+++.++..++++++|..+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 010446 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393 (510)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (510)
++++....+++++.++..+.++|.+|...|++++|.+++++++.+.++. .+..+..+...+.++|..|.+.+++.+|.
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~--~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL--LGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc--ccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 9999999999999999999999999999999999999999999999874 44556677778899999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Q 010446 394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (510)
Q Consensus 394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (510)
..|.++..+. +..|+++|++...+.+||.+|..+|++++|+++.+.++...+...+..++.....-..++.
T Consensus 430 ~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
T KOG1840|consen 430 QLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD 500 (508)
T ss_pred HHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence 9999999999 8889999999999999999999999999999999999999998888877776654444443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=2.2e-26 Score=230.26 Aligned_cols=317 Identities=15% Similarity=0.132 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHh--------
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI-------- 191 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 191 (510)
.+.+.+.++...|++++|+..+++++++ .|....++..+|.+|...|++++|+..+..+...
T Consensus 162 ~~~n~a~~~~~l~~~~~Ai~~~~~al~l----------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~ 231 (615)
T TIGR00990 162 YYSNRAACHNALGDWEKVVEDTTAALEL----------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS 231 (615)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH
Confidence 4667788888888888888888888877 7888889999999999999999997655332110
Q ss_pred --------------------------------------------------------------------------------
Q 010446 192 -------------------------------------------------------------------------------- 191 (510)
Q Consensus 192 -------------------------------------------------------------------------------- 191 (510)
T Consensus 232 ~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 232 AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence
Q ss_pred -----hhh-c--CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHH
Q 010446 192 -----VDS-L--KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263 (510)
Q Consensus 192 -----~~~-~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 263 (510)
.+. + +...|..+.++..+|.++..+|++++|+..+++++++ +|....++..+|.++...|++++
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence 000 0 0112445556778888888889999999998888875 34556778889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC
Q 010446 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (510)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (510)
|+..++++++. .|....++..+|.++...|++++|+..|++++++ .|.....+.++|.++...|
T Consensus 384 A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 384 AEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCC
Confidence 99999998876 4555778899999999999999999999999885 3555667889999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010446 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (510)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (510)
++++|+..+++++... |+. ..++..+|.++...|++++|+..|++++.+..... .........+...+.
T Consensus 448 ~~~eA~~~~~~al~~~-------P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 448 SIASSMATFRRCKKNF-------PEA---PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALA 516 (615)
T ss_pred CHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHH
Confidence 9999999999998762 333 34568899999999999999999999998753321 111222223333334
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
.+...|++++|+.++++++.+ +|....++..+|.++..+|++++|+.+|++++++.+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 455579999999999999984 3455567889999999999999999999999988753
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=7.2e-26 Score=226.55 Aligned_cols=317 Identities=16% Similarity=0.086 Sum_probs=248.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (510)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (510)
....+...|..++..|+|++|+..|++++.. .|+ +..+.++|.+|...|++++|+..+++++.+.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----------~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---- 190 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----------KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELD---- 190 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence 3445788899999999999999999999986 443 5678999999999999999999999998764
Q ss_pred CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH---------------------------------------------
Q 010446 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN--------------------------------------------- 231 (510)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------------------------- 231 (510)
|....+++.+|.+|..+|++++|+..+..+..
T Consensus 191 ---p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 191 ---PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 45566789999999999999999765543321
Q ss_pred ------------------------------------------------HHHHhcC--CCChhHHHHHHHHHHHHhhcCCH
Q 010446 232 ------------------------------------------------VLESRYG--KTSILLVTSLLGMAKVLGSIGRA 261 (510)
Q Consensus 232 ------------------------------------------------~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 261 (510)
.+..... ...+..+.++..+|.++...|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 1111111 11345566788889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 010446 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (510)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (510)
++|+..+++++++ .|....++..+|.++...|++++|+..++++++. +|....++..+|.++..
T Consensus 348 ~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 348 LEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence 9999999999886 5666788999999999999999999999999875 34445788899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010446 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 421 (510)
Q Consensus 342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 421 (510)
.|++++|+..|++++.+ .|+. ...+.++|.++...|++++|+..+++++.. .|....++..+
T Consensus 412 ~g~~~~A~~~~~kal~l-------~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~l 473 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDL-------DPDF---IFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDVYNYY 473 (615)
T ss_pred cCCHHHHHHHHHHHHHc-------CccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHH
Confidence 99999999999999887 2333 345688999999999999999999999874 35556788899
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446 422 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (510)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (510)
|.++...|++++|+..|++++.+.... .+.+......+...+..+...|++++|..++++++.+
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999999999999864221 0111122222222333444579999999999999875
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=1.8e-23 Score=208.47 Aligned_cols=305 Identities=12% Similarity=0.033 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
.+...+......|++++|+..+++++.. .|..+.++..+|.++...|++++|+..+++++.+.
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~----------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~------- 140 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAV----------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF------- 140 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 3566677778899999999999999988 88888899999999999999999999999998764
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
|....++..+|.++...|++++|+..+++++... ++++ ..+..++ .+...|++++|+..++++++..
T Consensus 141 P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~~---~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~---- 207 (656)
T PRK15174 141 SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-----PPRG---DMIATCL-SFLNKSRLPEDHDLARALLPFF---- 207 (656)
T ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCCH---HHHHHHH-HHHHcCCHHHHHHHHHHHHhcC----
Confidence 3344557889999999999999999999776542 2222 2333443 4788999999999999887651
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHH----HHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE----AVELYKKA 355 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a 355 (510)
.+........++.++...|++++|+..+++++.. +|....++.++|.++...|++++ |+..++++
T Consensus 208 ---~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 208 ---ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred ---CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 1122234456788999999999999999999974 34456788899999999999986 89999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (510)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (510)
+.. .|+. ..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+
T Consensus 277 l~l-------~P~~---~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 277 LQF-------NSDN---VRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred Hhh-------CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 887 3333 456788999999999999999999999875 3455677888999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010446 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (510)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 491 (510)
..|++++.. +|........+|.++...|++++|+..|+++++......
T Consensus 339 ~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 339 DEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999873 344445566678999999999999999999999865543
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=7.1e-23 Score=204.18 Aligned_cols=299 Identities=12% Similarity=0.072 Sum_probs=248.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+..-+......|++++|+..++..+.. .|..+.++..+|.+....|++++|+..+++++... |
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~----------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------P 107 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT----------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------V 107 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh----------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------C
Confidence 555677889999999999999999987 88889999999999999999999999999998775 4
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
....++..+|.++...|++++|+..+++++.+. |....++..++.++...|++++|+..+++++..
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~------ 173 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQAQE------ 173 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------
Confidence 445568999999999999999999999999862 445667889999999999999999999987765
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
.|.....+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..+++++..
T Consensus 174 --~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-- 241 (656)
T PRK15174 174 --VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-- 241 (656)
T ss_pred --CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 233344444443 4788999999999999887641 1111223456688899999999999999999976
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010446 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQE----GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (510)
.++. ..++.++|.++...|++++ |+..|++++.+ .|....++..+|.++...|++++|+.
T Consensus 242 -----~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 242 -----GLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred -----CCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3333 4566889999999999986 78999998875 35667889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (510)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (510)
.+++++.+ +|....++..+|.++...|++++|+..|+++++.
T Consensus 306 ~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 306 LLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999984 4555667789999999999999999999998874
No 9
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.93 E-value=5.7e-24 Score=184.22 Aligned_cols=319 Identities=15% Similarity=0.118 Sum_probs=261.4
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 010446 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 247 (510)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 247 (510)
-|.-+++.|++...+.+|+.+++.. .++-..+..+|..+|+.|+..++|++|+++...-+.+.+.. .+....+.+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvG---TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKs 97 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVG---TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKS 97 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhc---chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccc
Confidence 3566788999999999999999875 33445677789999999999999999999988777666554 223344667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC--------------------hHHHH
Q 010446 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------------AVDAE 307 (510)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~ 307 (510)
..++|+.+...|.|++|+.+..+-+.+.++.. +......+++++|.+|...|+ ++.|.
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 78999999999999999999999999988875 445567899999999998876 45677
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 010446 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387 (510)
Q Consensus 308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (510)
++|..-+++.++.. +......++.+||..|+-.|+|+.|+...+.-+.+.++- .+....-.++.++|.++.-.|
T Consensus 176 ~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----GDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 176 KFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----GDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----hhHHHHHHhhcccchhhhhhc
Confidence 77777777776652 334466789999999999999999999999999998873 344455678899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHH
Q 010446 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467 (510)
Q Consensus 388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 467 (510)
+++.|+++|+.++.+..++. +....+...+.||..|.-..++++|+.|+.+-+.|.++. .+......+++.||..+
T Consensus 250 ~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNAF 325 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHH
Confidence 99999999999999988874 344556778899999999999999999999999998876 33455678899999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 010446 468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTV 503 (510)
Q Consensus 468 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 503 (510)
...|..++|+.+.++.+++..++-.+.....+...+
T Consensus 326 ~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nl 361 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRSSLEVNDTSGELTARDNL 361 (639)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhh
Confidence 999999999999999999998875554333344333
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=8.2e-22 Score=187.76 Aligned_cols=314 Identities=16% Similarity=0.128 Sum_probs=244.9
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (510)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (510)
..+...+..+..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..++.++...
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--- 99 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--- 99 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---
Confidence 34445666778888999999999999999987 67778899999999999999999999999887632
Q ss_pred CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (510)
.........++..+|.+|...|++++|+..|+++++. .+....++..++.++...|++++|++.++++++..
T Consensus 100 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 100 DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 1112233456889999999999999999999998763 24446778899999999999999999999987652
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010446 276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (510)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (510)
.. +........+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++
T Consensus 172 ~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 172 GD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred CC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 111123445778999999999999999999999875 2344567888999999999999999999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (510)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (510)
+... + .....++..++.+|...|++++|...+++++... |+. ..+..++.++...|++++|.
T Consensus 241 ~~~~-------p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~-~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 241 EEQD-------P--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGA-DLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHHC-------h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-hHHHHHHHHHHHhCCHHHHH
Confidence 8761 2 2223456789999999999999999999987752 222 23478999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHH
Q 010446 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLY--HLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~ 487 (510)
..++++++. .|+.......++..+. ..|+..+|+..+++.++..
T Consensus 303 ~~l~~~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 303 ALLREQLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 999999884 3444333222333222 2568999999999888643
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=4.6e-22 Score=212.00 Aligned_cols=321 Identities=14% Similarity=0.096 Sum_probs=222.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH--
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL-- 201 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-- 201 (510)
.+..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..|+++++...........
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRA----------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 367788999999999999999987 77788999999999999999999999999998765221110000
Q ss_pred -----HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446 202 -----LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (510)
Q Consensus 202 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (510)
.......+|..+...|++++|+..|+++++.. |....++..+|.++...|++++|+.+|++++++..
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 11123456888999999999999999999862 34456788999999999999999999999987621
Q ss_pred Hhc----------CCCCc------------------------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 277 LNR----------GTESA------------------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 277 ~~~----------~~~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
... ....+ .....+..+|.++...|++++|+..|+++++.
T Consensus 417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~------ 490 (1157)
T PRK11447 417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL------ 490 (1157)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 100 00000 00112344677778899999999999999885
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc------------------------cCC---CC-------
Q 010446 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN------------------------YMS---LD------- 368 (510)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------~~~---~~------- 368 (510)
.|....++..+|.+|...|++++|+..++++++...... ... .+
T Consensus 491 --~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 491 --DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 344456788999999999999999999999876421100 000 00
Q ss_pred ------------------------------ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010446 369 ------------------------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418 (510)
Q Consensus 369 ------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 418 (510)
.+.....+..+|.++...|++++|+..|++++.. .|....++
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~ 640 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADAR 640 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 0000123456777777778888888888777764 23444566
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (510)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (510)
..++.+|...|++++|+..+++++.. .|+...++..+|.++...|++++|.++|++++..
T Consensus 641 ~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 641 LGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66677777777777777666655542 2333344555666666666666666666666553
No 12
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-22 Score=175.77 Aligned_cols=330 Identities=15% Similarity=0.149 Sum_probs=262.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
+...+..+++.|++...+.+|+.|++. +..+. ....+|..+|.+|+..+||++|+++...-+.+.+.+++.-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qv-------GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQV-------GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHh-------cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 455788899999999999999999987 33232 3455788999999999999999999877666655544432
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCC-------------------
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR------------------- 260 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 260 (510)
. -+..--++|+.+-..|.|++|+.+..+-+.+.++. .+.....++++++|.+|...|+
T Consensus 93 G-EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 93 G-EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred c-cccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 2 23345789999999999999999999999998876 3344668899999999998875
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 010446 261 -AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 339 (510)
Q Consensus 261 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 339 (510)
++.|.++|..-+++.++.. +......++.+||..|+-+|+|+.|+...+.-+.+.++.. +....-.++.++|.++
T Consensus 170 al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhh
Confidence 4556667777777766654 3445567899999999999999999999999999988763 3344667899999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 010446 340 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 419 (510)
Q Consensus 340 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 419 (510)
.-.|+++.|+++|++.+.+..+. .+...-+...+.||..|.-..++++|+.++++-+.|.++.. +......+++
T Consensus 246 iflg~fe~A~ehYK~tl~LAiel----g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~Racw 319 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIEL----GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACW 319 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHHh----cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHH
Confidence 99999999999999999998875 33444456668999999999999999999999999998873 4445667899
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC
Q 010446 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472 (510)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 472 (510)
.||..|...|..++|+.+.++.+++..+...+.. ...+..++...-...|.
T Consensus 320 SLgna~~alg~h~kAl~fae~hl~~s~ev~D~sg--elTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 320 SLGNAFNALGEHRKALYFAELHLRSSLEVNDTSG--ELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcch--hhhhhhhhHHHHHHhCC
Confidence 9999999999999999999999999887744332 23334555555555554
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=1.6e-21 Score=207.23 Aligned_cols=300 Identities=20% Similarity=0.209 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
...+..+..+...|++++|+.++++++.. .|....++..+|.++...|++++|+..++++....
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 631 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADA----------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ------ 631 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 44667788889999999999999998765 55567788999999999999999999999887653
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
|.....+..+|.++...|++++|...|+++++.. |....++..++.++...|++++|+.+++.+.+.
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 698 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK--------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ---- 698 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence 2223457889999999999999999999988642 333456677777777778888887777766553
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
.|.....+..+|.++...|++++|+..|++++... ++. ..+..++.++...|++++|...+++++..
T Consensus 699 ----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 699 ----HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-----PSS----QNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred ----CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23345566667777777777777777777777641 111 34556677777777777777777776654
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (510)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (510)
.+++ ..++..+|.++...|++++|+..|+++++. .|....++..+|.++...|+ .+|+.++
T Consensus 766 -------~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 766 -------HPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred -------CCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 2222 234566777777777777777777776653 23344556666777777777 6677777
Q ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
++++.+ .|.....+..+|.++...|++++|..+|+++++..
T Consensus 827 ~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 827 EKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 766663 12223344566666777777777777777776643
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.7e-21 Score=207.71 Aligned_cols=309 Identities=10% Similarity=0.051 Sum_probs=239.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH
Q 010446 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (510)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (510)
...+..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..|+++++.... .+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~----~~~ 420 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQV----------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG----NTN 420 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHH
Confidence 44567788999999999999999988 6777788999999999999999999999999876421 111
Q ss_pred H---------------------------------------HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh
Q 010446 202 L---------------------------------------DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242 (510)
Q Consensus 202 ~---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 242 (510)
. ...+..+|..+...|++++|+..|+++++.. |
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P 492 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------P 492 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C
Confidence 0 1123346777788899999999999998762 4
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH--------
Q 010446 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-------- 314 (510)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------- 314 (510)
....++..+|.+|...|++++|+..++++++. .|.....+..++..+...|++++|+..++++.
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 44567889999999999999999999999875 34445556666777777777777777665421
Q ss_pred -----------------------------HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010446 315 -----------------------------KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (510)
Q Consensus 315 -----------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (510)
...+ .+|.....+..+|.++...|++++|+..|+++++.
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~------- 632 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR------- 632 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 1111 12333456788999999999999999999999987
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (510)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (510)
.|++ ..++..++.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 633 ~P~~---~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 633 EPGN---ADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 3444 346789999999999999999999987653 34455677889999999999999999999998753
Q ss_pred HHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
... +.......++..+|.++...|++++|+.+|++++.
T Consensus 702 ~~~--~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 702 KSQ--PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 110 11112345667789999999999999999999985
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=9.4e-21 Score=201.31 Aligned_cols=306 Identities=17% Similarity=0.185 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
.+...+..+...|++++|+..+++++.. .|....++..++.++...|++++|...++++....
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------- 563 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTI----------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN------- 563 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 3556667777777777777777777765 44555666666666666777777776666665432
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
|.....+..++..+...|++++|+..++++++.. |.....+..+|.++...|++++|+..++++++.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 630 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL----- 630 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 1112234455555555566666655555554321 122334555555555555555555555555543
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH--------------------------cCCCChHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV--------------------------YGENDGRVGMAMC 333 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~~~~~~~~~~~~ 333 (510)
.|.....+..+|.++...|++++|...++++++..... .....|.....+.
T Consensus 631 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 631 ---QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 22233444555555555555555555555544321000 0001222334556
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010446 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413 (510)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (510)
.+|.++...|++++|+..|++++.. .++. ..+..++.++...|++++|...+++++.. .|.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~ 768 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKR-------APSS----QNAIKLHRALLASGNTAEAVKTLEAWLKT--------HPN 768 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh-------CCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC
Confidence 6677777777777777777777665 2222 23456777777777777777777776653 344
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (510)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (510)
...++..+|.+|...|++++|+..|+++++. .|....++..++.++...|+ .+|+.++++++++
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 4567788888888888888888888888873 34455677888888888888 7788888888764
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.3e-21 Score=167.97 Aligned_cols=330 Identities=14% Similarity=0.102 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (510)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (510)
......+-+.|..++..|+|++|+.+|.+|+++ .|+.+..|.+++.||...|+|++.++...+++++.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-- 179 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-- 179 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--
Confidence 344556778899999999999999999999998 66668899999999999999999999999998775
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHH------------------HHHHHH-----HHHhc--------------
Q 010446 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVY------------------QRVINV-----LESRY-------------- 237 (510)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~-----~~~~~-------------- 237 (510)
|....+++..+..+...|++++|+.-. ++.+.. ..+.+
T Consensus 180 -----P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi 254 (606)
T KOG0547|consen 180 -----PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFI 254 (606)
T ss_pred -----cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 788888999999999999998886432 222211 00000
Q ss_pred -----------------------------------------------------------CC---C--ChhHHHHHHHHHH
Q 010446 238 -----------------------------------------------------------GK---T--SILLVTSLLGMAK 253 (510)
Q Consensus 238 -----------------------------------------------------------~~---~--~~~~~~~~~~la~ 253 (510)
.. + -...+.++...|.
T Consensus 255 ~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 255 ASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred HHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 00 0 0123556666777
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcC--------------------------CCCcchHHHHHHHHHHHHHcCChHHHH
Q 010446 254 VLGSIGRAKKAVEIYHRVITILELNRG--------------------------TESADLVLPLFSLGSLFIKEGKAVDAE 307 (510)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~ 307 (510)
.++..|++..|...++.++.+...... .-+|....+|+..|.++.-++++++|+
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 778888888888887777764321110 124556778888888888889999999
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 010446 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387 (510)
Q Consensus 308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (510)
.-|++++.+ +|..+.++..++...+++++++++...|+++...+... ..++...|.++..++
T Consensus 415 aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~----------~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 415 ADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC----------PEVYNLFAEILTDQQ 476 (606)
T ss_pred HHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------chHHHHHHHHHhhHH
Confidence 999998875 57778888889999999999999999999988875332 345677899999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHH
Q 010446 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466 (510)
Q Consensus 388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 466 (510)
++++|++.|..++.+.....+- +.. +..+..-|.+ ..-.+++.+|+.++++|+++ +|..-.++..||.+
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~-~v~-~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLI-IVN-AAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQF 546 (606)
T ss_pred hHHHHHHHHHHHHhhccccccc-ccc-chhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHH
Confidence 9999999999999875442110 111 1112222222 22348999999999999985 56667789999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHH
Q 010446 467 LYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 467 ~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
..++|+.++|+++|+++..+.+.
T Consensus 547 ~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988765
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-21 Score=180.78 Aligned_cols=294 Identities=15% Similarity=0.125 Sum_probs=230.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (510)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
......-+..+|+..|++ +. ....+...++..+|..|+.+++|++|..+|+.+.+...-.-++
T Consensus 327 ~~~~s~y~~~~A~~~~~k-lp---------~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~------- 389 (638)
T KOG1126|consen 327 YRSLSQYNCREALNLFEK-LP---------SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG------- 389 (638)
T ss_pred HHHHHHHHHHHHHHHHHh-hH---------HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------
Confidence 334455566777777777 32 1255666899999999999999999999999987664221111
Q ss_pred HHHHHHHHHhhhcHHHHHHHH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446 206 LLHMGSMYSTLENYEKSMLVY-QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (510)
.-....+++...+-- ++.++ +..++ .++....+|..+|++|..+++++.|++++++|+.+ +|
T Consensus 390 meiyST~LWHLq~~v-~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp 452 (638)
T KOG1126|consen 390 MEIYSTTLWHLQDEV-ALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DP 452 (638)
T ss_pred hhHHHHHHHHHHhhH-HHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CC
Confidence 111222222222211 12222 22222 23555678999999999999999999999999997 67
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (510)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (510)
..+.+|..+|.-+....++|.|..+|++|+.+ +|..-.+|+.+|.+|.++++++.|+-+|++|+++
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I------ 518 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI------ 518 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC------
Confidence 78899999999999999999999999999985 5667789999999999999999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
.|.. ..+...+|.++.+.|+.++|+.+|++|+.+ +|......+..|.++...+++++|+..+++..++
T Consensus 519 -NP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 519 -NPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred -Cccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 3333 334577999999999999999999999875 3444566778999999999999999999988775
Q ss_pred HHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
.|+...++..+|.+|...|+.+.|+..|.-|.++.
T Consensus 587 --------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 587 --------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred --------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 46777889999999999999999999999998865
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.5e-20 Score=177.61 Aligned_cols=277 Identities=18% Similarity=0.135 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (510)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (510)
....+..|..+...|++++|+..+++++... |....++..+|.++...|++++|+..+++++... ....
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~ 103 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTR 103 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCH
Confidence 3345667888899999999999999998753 4445668899999999999999999999887621 1111
Q ss_pred hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (510)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (510)
.....++..+|.+|...|++++|+.+++++++. .+....++..++.++...|++++|+..++++++....
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-- 173 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-- 173 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC--
Confidence 234467899999999999999999999999864 3445678899999999999999999999998764211
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (510)
+........+..+|.++...|++++|+.+++++++.. ++. ..++..+|.++...|++++|+.++++++.
T Consensus 174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-------PQC---VRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-------cCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112244567789999999999999999999998862 222 34667899999999999999999999886
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (510)
.. ......++..++.+|...|++++|...+++++.. +|+. ..+..++.++...|++++|...++
T Consensus 243 ~~-------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~-~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 243 QD-------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGA-DLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HC-------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCc-hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 42 1223456788999999999999999999998874 2222 234789999999999999999999
Q ss_pred HHHHH
Q 010446 482 EALYI 486 (510)
Q Consensus 482 ~al~~ 486 (510)
++++.
T Consensus 307 ~~l~~ 311 (389)
T PRK11788 307 EQLRR 311 (389)
T ss_pred HHHHh
Confidence 99875
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.8e-19 Score=172.60 Aligned_cols=333 Identities=16% Similarity=0.132 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE-EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (510)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (510)
.....+..|+.+..+|+|++|..+|.+++.. .++ ....+..+|..|+..|+++.|...|+++....
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--- 372 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA----------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--- 372 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----------CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC---
Confidence 3444777888888888888888888887765 222 35566778888888888888888888777654
Q ss_pred CCCchHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010446 196 KDDEPLLDAILLHMGSMYSTLE----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271 (510)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 271 (510)
|.....+..+|.+|...+ ..+.|..+..++++. .|....++..++.++....-+. ++.+|..|
T Consensus 373 ----p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~~~-sL~~~~~A 439 (1018)
T KOG2002|consen 373 ----PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDPWA-SLDAYGNA 439 (1018)
T ss_pred ----cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcChHH-HHHHHHHH
Confidence 444445667777777665 445555555555543 2555778889998887655554 49999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHHCCCHHHHH
Q 010446 272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRVGMAMCSLAHAKCANGNAEEAV 349 (510)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 349 (510)
+.+....... .-...++++|..++..|++.+|...|.+|+..+......+. .......+|+|.++...++++.|.
T Consensus 440 ~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 440 LDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 9988776533 34678999999999999999999999999988553322222 112345677888887777777777
Q ss_pred HHHHHHHHHHHh---------------------------hccCCCCChHH------------------------------
Q 010446 350 ELYKKALRVIKD---------------------------SNYMSLDDSIM------------------------------ 372 (510)
Q Consensus 350 ~~~~~al~~~~~---------------------------~~~~~~~~~~~------------------------------ 372 (510)
+.|...+..... .......++..
T Consensus 517 e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 517 EMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 777765542110 00000111110
Q ss_pred ---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 373 ---ENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 373 ---~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
..+...||+++... .+.+.+...+++|++++.+.+ ..+|....+-+.+|.++...|++.+|...|.++.+-
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL-~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL-RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH-hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 11223455554432 122445556666666665554 245666667777777777778888887777777663
Q ss_pred HHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
.. +...+|.++|.||..+|+|..|++.|+.++..+
T Consensus 676 ~~--------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 676 TS--------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred Hh--------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 234567888888888888888888888887755
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.5e-18 Score=177.20 Aligned_cols=318 Identities=11% Similarity=0.008 Sum_probs=233.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+...+..+...|++++|+..+++++.. .|..+.++..++.++...|++++|+..+++++... |
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-------P 114 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSL----------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-------P 114 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------C
Confidence 566788899999999999999999987 77778888999999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHH----------
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR---------- 270 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------- 270 (510)
.... +..+|.++...|++++|+..++++++.. |....++..++.++...|..++|+..+++
T Consensus 115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 3344 7789999999999999999999999863 34455666778888888888877755552
Q ss_pred -----------------------------HHHHHHHhcC--CCC----cchHHHHHH-HHHHHHHcCChHHHHHHHHHHH
Q 010446 271 -----------------------------VITILELNRG--TES----ADLVLPLFS-LGSLFIKEGKAVDAESVFSRIL 314 (510)
Q Consensus 271 -----------------------------al~~~~~~~~--~~~----~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al 314 (510)
|++.++.... +.. +....+... ++ .+...|++++|+..|++++
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhh
Confidence 2222211110 111 122222222 34 3467799999999999987
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHHHHcCChHHHH
Q 010446 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGR 393 (510)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 393 (510)
+. ++..|..+..+ +|.+|...|++++|+..|+++++. .+.. .........++.++...|++++|+
T Consensus 265 ~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~-------~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 265 AE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH-------PETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred cc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc-------CCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 64 22234443333 588999999999999999998764 2222 111234466788889999999999
Q ss_pred HHHHHHHHHHHHh---h--CCCCh--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHH
Q 010446 394 ELLEECLLITEKY---K--GKEHP--SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466 (510)
Q Consensus 394 ~~~~~al~~~~~~---~--~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 466 (510)
.+++++....... . ....| ....++..+|.++...|++++|++.+++++.. .|.....+..+|.+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l 402 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASV 402 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 9999887652110 0 00112 23456778899999999999999999998874 45556788999999
Q ss_pred HHhcCChHHHHHHHHHHHHHH
Q 010446 467 LYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 467 ~~~~g~~~~A~~~~~~al~~~ 487 (510)
+...|++++|++.+++++++.
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999988854
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.2e-18 Score=167.20 Aligned_cols=305 Identities=19% Similarity=0.224 Sum_probs=245.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHH
Q 010446 132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS 211 (510)
Q Consensus 132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (510)
..+..+...+.++... .+..+.++..|+..++..|+|..+..+...++... ...+..+..++.+|.
T Consensus 250 ~s~~~~~~ll~~ay~~----------n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t----~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKE----------NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT----ENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHHHHHHhh----------cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHH
Confidence 3456666666666655 77778899999999999999999999998887764 344677888999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 010446 212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 291 (510)
Q Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 291 (510)
+|..+|+|++|..+|.+++... ++ ...-.+..+|++|...|+++.|..+|++.++. .|....+..
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~-----~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~ 380 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKAD-----ND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMK 380 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccC-----CC--CccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHH
Confidence 9999999999999999998752 12 23566889999999999999999999999886 566678888
Q ss_pred HHHHHHHHcC----ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446 292 SLGSLFIKEG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (510)
Q Consensus 292 ~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (510)
.||.+|...+ ..++|..+..++++. .|....+|..++.++.... ...++.+|.+|+.+..... .+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~--~~ 449 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKG--KQ 449 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcC--CC
Confidence 8999998876 456666666666653 3667789999999887654 4455999999998887641 22
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (510)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (510)
.-...++++|..++..|++.+|...+.+|+.........+. .......+++|.++...++++.|.+.|...+.
T Consensus 450 ---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk-- 524 (1018)
T KOG2002|consen 450 ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK-- 524 (1018)
T ss_pred ---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--
Confidence 22456799999999999999999999999988553322222 12345688999999999999999999999887
Q ss_pred HHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
.||..+.++..+|......++..+|..++..++.+-
T Consensus 525 ------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 525 ------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred ------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 589999999999988888899999999999998754
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=6.4e-19 Score=179.95 Aligned_cols=269 Identities=15% Similarity=0.028 Sum_probs=220.5
Q ss_pred Chh--HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 010446 158 GIE--EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES 235 (510)
Q Consensus 158 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 235 (510)
.|. .+.++..+|.++.. |++.+|+..+.++.... ++ .. ....+|..+...|++++|+..|+++...
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~----Pd---~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~--- 538 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ----PD---AW-QHRAVAYQAYQVEDYATALAAWQKISLH--- 538 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC----Cc---hH-HHHHHHHHHHHCCCHHHHHHHHHHHhcc---
Confidence 455 78899999999987 89999999998887654 22 11 2556777778999999999999987542
Q ss_pred hcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 236 RYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (510)
Q Consensus 236 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (510)
+ +. ...+..+|.++...|++++|+.+++++++. .|.....+..++......|++++|+..++++++
T Consensus 539 ---~--p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 539 ---D--MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred ---C--CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1 11 234678899999999999999999999875 244445555666667778999999999999998
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 010446 316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 395 (510)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (510)
. .|. ...+.++|.++.+.|++++|+..+++++.. .|+++ .++.++|.++...|++++|+..
T Consensus 605 l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd~~---~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 605 I--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-------EPNNS---NYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred h--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHCCCHHHHHHH
Confidence 5 233 578899999999999999999999999988 34443 4678999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHH
Q 010446 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475 (510)
Q Consensus 396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 475 (510)
|++++++ .|....++.++|.++...|++++|+..|++++++ .|....+....|.+.....+++.
T Consensus 666 l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 666 LERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHH
Confidence 9999885 4566788999999999999999999999999984 46667777888888888888888
Q ss_pred HHHHHHHHHHHH
Q 010446 476 AEKLVLEALYIR 487 (510)
Q Consensus 476 A~~~~~~al~~~ 487 (510)
|.+.+.++..+.
T Consensus 730 a~~~~~r~~~~~ 741 (987)
T PRK09782 730 LHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHhhcC
Confidence 888888877654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=2.9e-18 Score=175.21 Aligned_cols=305 Identities=10% Similarity=0.014 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC---hHHH-------------
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD---LKFV------------- 181 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A------------- 181 (510)
...+...+......|++++|..+++++... ..+..........++.+|...+. ..++
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPF-------QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCC-------CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 344566667789999999999999998863 01011122233366666666554 3333
Q ss_pred ---------HHHHHHHHHhhhhcCCCchH--HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010446 182 ---------QSLLDMMSGIVDSLKDDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (510)
Q Consensus 182 ---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (510)
...+..+.... ...|. ...+++++|.++.. |++.+|+..+.+++... ++ ......
T Consensus 449 ~~~~~~~~~~~~~~~~~~al----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd----~~~~L~ 514 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLL----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PD----AWQHRA 514 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhc----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cc----hHHHHH
Confidence 22233332222 23233 56678999999987 89999999999988753 22 123566
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (510)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (510)
+|.++...|++++|+..+++++.. .+. ...+..+|.++...|++++|+.+++++++. .|....
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~ 577 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNA 577 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHH
Confidence 777888999999999999987543 121 234678899999999999999999999874 233334
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010446 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (510)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (510)
.+..++......|++++|+..++++++. .|+ ...+.++|.++.+.|++++|+..|++++.+
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~l-------~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------- 638 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLNI-------APS----ANAYVARATIYRQRHNVPAAVSDLRAALEL-------- 638 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 4555666677789999999999999987 332 356789999999999999999999999985
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
.|....++.++|.++...|++++|+..|++++++ +|....++.++|.++...|++++|+.+|++++++.
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4666688999999999999999999999999984 46667888999999999999999999999999866
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=4.8e-18 Score=173.42 Aligned_cols=320 Identities=10% Similarity=-0.020 Sum_probs=234.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
....+..+...|++++|+..++++++. .|..+. +..+|.++...|++++|+..+++++... |
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~----------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P 147 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSG----------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------P 147 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------C
Confidence 456777889999999999999999987 777777 8899999999999999999999998875 3
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHH---------------------------------------HHHHHHHhcC--C
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQR---------------------------------------VINVLESRYG--K 239 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------------------------------al~~~~~~~~--~ 239 (510)
....++..++.++...|..++|+..+++ |++.++.... +
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 3334456677777777777766655542 2221111110 1
Q ss_pred C----ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 240 T----SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (510)
Q Consensus 240 ~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (510)
. .+....+.......+...|++++|+..|+++++. ++..|..+. ..+|.+|...|++++|+..|++++.
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-----GQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 1 1222333333223446779999999999998765 112243333 3368899999999999999999876
Q ss_pred HHHHHcCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh------ccCCCCChHHHHHHHHHHHHHHHcCC
Q 010446 316 IYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS------NYMSLDDSIMENMRIDLAELLHIVGR 388 (510)
Q Consensus 316 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (510)
. .+..+ ........++.++...|++++|..+++++....... ....|+ +....++..+|.++...|+
T Consensus 301 ~-----~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 301 H-----PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred c-----CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCC
Confidence 3 12221 113456677778899999999999999988763210 000111 1233466789999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH
Q 010446 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 468 (510)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 468 (510)
+++|+..+++++.. .|.....+..+|.++...|++++|+..+++++.+ .|+....+..+|.++.
T Consensus 375 ~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 375 LPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHH
Confidence 99999999998875 3555678999999999999999999999999984 4666678889999999
Q ss_pred hcCChHHHHHHHHHHHHHH
Q 010446 469 HLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~ 487 (510)
..|++++|...++++++..
T Consensus 439 ~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HhCCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.9e-18 Score=152.58 Aligned_cols=278 Identities=17% Similarity=0.139 Sum_probs=218.6
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (510)
-+.....-...|.+...+.|+++|+..|+...+.. |....-+....++++-..+-.+---+.+.+..+
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-------PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i----- 325 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-------PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI----- 325 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh-----
Confidence 44455566677888889999999999998876531 322222333344444443323222222333332
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
+.-...+...+|+.|...++.++|+.+|++|+++ +|....++..+|.-|..+.+...|+..|++|+++
T Consensus 326 ---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi- 393 (559)
T KOG1155|consen 326 ---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI- 393 (559)
T ss_pred ---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-
Confidence 1223455667899999999999999999999998 6778899999999999999999999999999997
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (510)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (510)
.|..-.+|+.||..|.-++-+.=|+-+|++|... .|.++ .+|..||.+|.+.++.++|+.+|.
T Consensus 394 -------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-------kPnDs---Rlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 394 -------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-------KPNDS---RLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred -------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-------CCCch---HHHHHHHHHHHHhccHHHHHHHHH
Confidence 4666789999999999999999999999999987 44454 356789999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 010446 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (510)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (510)
+++.... ....++..||.+|.+.++..+|..+|++.++.. ...|...+.+..+...|+.-+.+.+++++|.
T Consensus 457 rai~~~d--------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 457 RAILLGD--------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHhccc--------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 9987531 235788999999999999999999999999976 3345567778888888999999999999999
Q ss_pred HHHHHHHH
Q 010446 478 KLVLEALY 485 (510)
Q Consensus 478 ~~~~~al~ 485 (510)
.+..+++.
T Consensus 528 ~Ya~~~~~ 535 (559)
T KOG1155|consen 528 YYATLVLK 535 (559)
T ss_pred HHHHHHhc
Confidence 98777664
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=6.5e-20 Score=169.26 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=215.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+...|+.|+..++|++|..+|+.+-+. .|....-.-....+++...+- -++.++-+ .+. +..|
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~----------~p~rv~~meiyST~LWHLq~~-v~Ls~Laq--~Li----~~~~ 418 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRI----------EPYRVKGMEIYSTTLWHLQDE-VALSYLAQ--DLI----DTDP 418 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccccccchhHHHHHHHHHHhh-HHHHHHHH--HHH----hhCC
Confidence 566789999999999999999988766 444444444444444444332 22233322 111 2234
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
.....|..+|++|.-+++++.|++.|++|+++ +|..+.+|..+|.-+....++++|..+|++|+..
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~------ 484 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV------ 484 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC------
Confidence 44456899999999999999999999999986 4666888999999999999999999999999987
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
.|..-.+|+.+|.+|.++++++.|+-+|++|+++ +|........+|.++.+.|+.++|+.++++|+.+.
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld- 553 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD- 553 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-
Confidence 5667899999999999999999999999999986 56667788889999999999999999999999872
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (510)
+.++. ..+..|.++...+++++|+..+++..++ .|+...++..+|.+|.+.|+.+.|+..|.-
T Consensus 554 ------~kn~l---~~~~~~~il~~~~~~~eal~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 554 ------PKNPL---CKYHRASILFSLGRYVEALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred ------CCCch---hHHHHHHHHHhhcchHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 33332 3478999999999999999999987765 467788999999999999999999999998
Q ss_pred HHHH
Q 010446 441 CLDI 444 (510)
Q Consensus 441 al~~ 444 (510)
|.++
T Consensus 617 A~~l 620 (638)
T KOG1126|consen 617 ALDL 620 (638)
T ss_pred HhcC
Confidence 8874
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-18 Score=157.77 Aligned_cols=280 Identities=15% Similarity=0.187 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
......+.+...+..++..+++.+..+..+..++. +|-+..++...-.++...|+..+-..+-.++.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----------dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV--- 305 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----------DPFHLPCLPLHIACLYELGKSNKLFLLSHKLV--- 305 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----------CCCCcchHHHHHHHHHHhcccchHHHHHHHHH---
Confidence 33455666888899999999999999999998877 55555554443338888887665444333333
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010446 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (510)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (510)
+..|..+..|+.+|..|...|++.+|..+|.++..+ ++..+.+|...|..+...|+.++|+..|..|-
T Consensus 306 ----~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa 373 (611)
T KOG1173|consen 306 ----DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA 373 (611)
T ss_pred ----HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence 333666667999999999999999999999999775 35667889999999999999999999999998
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010446 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (510)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (510)
++... .......+|.-|..+++++-|..+|.+|+.++ |.....+..+|.+.+..+.+.+|..+|
T Consensus 374 rl~~G--------~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 374 RLMPG--------CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred HhccC--------CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHH
Confidence 88533 22345568889999999999999999999974 444467888999999999999999999
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH
Q 010446 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432 (510)
Q Consensus 353 ~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 432 (510)
+.++...+.. .+....+.-++.+||.++.+++++++|+.++++++.+ .|..+.++..+|-+|..+|+++
T Consensus 438 ~~~l~~ik~~---~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 438 QKALEVIKSV---LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HHHHHHhhhc---cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChH
Confidence 9999777664 3344456667899999999999999999999999986 3556688899999999999999
Q ss_pred HHHHHHHHHHHH
Q 010446 433 EAERLLRICLDI 444 (510)
Q Consensus 433 ~A~~~~~~al~~ 444 (510)
.|+++|.+++.+
T Consensus 507 ~Aid~fhKaL~l 518 (611)
T KOG1173|consen 507 KAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHHhc
Confidence 999999999985
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.5e-18 Score=150.87 Aligned_cols=268 Identities=16% Similarity=0.176 Sum_probs=213.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
.|...+.+.|+++|+..|+...+. +|....-+....++++-..+-.+-.-+.+.+..+. .-.|+
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~kn----------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~E-- 331 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKN----------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPE-- 331 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhc----------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCcc--
Confidence 345667888999999999987754 55444444445555554444332222223333321 22232
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (510)
....+|+.|...++.++|+.+|++|+++ +|....++..+|.-|..+.+...|++.|++|+++ .
T Consensus 332 -TCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~ 394 (559)
T KOG1155|consen 332 -TCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------N 394 (559)
T ss_pred -ceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------C
Confidence 2567899999999999999999999987 4667889999999999999999999999999998 5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (510)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (510)
|..-.+|+.||+.|.-++-+.=|+-+|++|... .|.....+..||.+|.+.++.++|+..|.+++....
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--- 463 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--- 463 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc---
Confidence 666799999999999999999999999999985 355567888999999999999999999999998722
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
. -..++..||.+|.+.++.++|..+|++.++.. ...|...+.+..+...|+..+.+.+++++|..+..+++.
T Consensus 464 -----t--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 -----T--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred -----c--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 1 13467899999999999999999999999876 333556677888888899999999999999998887766
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=2.1e-17 Score=157.66 Aligned_cols=322 Identities=14% Similarity=0.121 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (510)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (510)
..++++.++..|..++..|++++|..++.+++.. .|..+.+|..||.+|-.+|+.+++....-.|..+.
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~- 203 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN- 203 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-
Confidence 4467888999999999999999999999999988 89999999999999999999999999887776654
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (510)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (510)
+.++ ..|..++.....+|++++|.-+|.+|++. .|.........+.+|.+.|+...|...+.+++.
T Consensus 204 ---p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 204 ---PKDY---ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred ---CCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 3333 44889999999999999999999999986 244567788899999999999999999999998
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010446 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK 353 (510)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (510)
.... .+...........+..+...++-+.|.+.++.++..... ......++.++.++.....++.|.....
T Consensus 270 ~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~------~~~~ed~ni~ael~l~~~q~d~~~~~i~ 340 (895)
T KOG2076|consen 270 LDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD------EASLEDLNILAELFLKNKQSDKALMKIV 340 (895)
T ss_pred hCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc------cccccHHHHHHHHHHHhHHHHHhhHHHH
Confidence 7420 011222333445577788888889999999888873221 1122334456666776666766666554
Q ss_pred HHHH----------------------HHHhhc--------------------------------cCCCCChHHHHHHHHH
Q 010446 354 KALR----------------------VIKDSN--------------------------------YMSLDDSIMENMRIDL 379 (510)
Q Consensus 354 ~al~----------------------~~~~~~--------------------------------~~~~~~~~~~~~~~~l 379 (510)
.... ++.-.. ............+..+
T Consensus 341 ~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~ 420 (895)
T KOG2076|consen 341 DDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDL 420 (895)
T ss_pred HHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHH
Confidence 4332 000000 0001123345567889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHH
Q 010446 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP 459 (510)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 459 (510)
+.++...|++.+|+.++...... .......+|..+|.||..+|.+++|+++|++++.. .|+...+
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~ 485 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDA 485 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhh
Confidence 99999999999999999876542 22234678999999999999999999999999984 5677788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 010446 460 MLHLGITLYHLNRDKEAEKLVLEAL 484 (510)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~al 484 (510)
...|+.++..+|++++|.+.+.+..
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8999999999999998877776643
No 30
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.83 E-value=1.6e-16 Score=167.95 Aligned_cols=436 Identities=13% Similarity=0.064 Sum_probs=297.7
Q ss_pred ccccccccccccccchhhHHHhhhhcccccCCCcccchhhhhhhccCCC----CCchHHhhhhhhhhhhcccccchHHHH
Q 010446 41 LQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFS----APNDFARSKTLHDHSSNLWDGMNDFER 116 (510)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~ 116 (510)
+.+.+...+.|+..++.+.++....+.+.++..+...+...+....-|. ....|.+++.++..+....-...+..
T Consensus 260 ~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~- 338 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQ- 338 (903)
T ss_pred HhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCch-
Confidence 4566777788888888888888888887777777666666655433322 11236666777665542221111111
Q ss_pred HHHHHH-HHHHHHHHcCChhHHHHHHHHHH------HH----------------HHHHHhcCC--CChhHHHHHHHHHHH
Q 010446 117 QLLELF-NEVKSMIMMGNKNDAIDLLQANY------EA----------------VKEQINAGN--KGIEEVAILDIIALG 171 (510)
Q Consensus 117 ~~~~l~-~~~~~~~~~g~~~~A~~~~~~al------~~----------------~~~~~~~~~--~~~~~~~~~~~l~~~ 171 (510)
....+. ..+..+...|++.+|+..+..+- .. ........+ .....+......+.+
T Consensus 339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 339 ELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 122333 33455666777776666554320 00 000000000 000112234556777
Q ss_pred HHhhCChHHHHHHHHHHHHhhhhcC-C-CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446 172 YVYIGDLKFVQSLLDMMSGIVDSLK-D-DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (510)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (510)
+...|++++|...+..+.......+ . .......+...++.++...|++++|..++++++..... .+......+..
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~ 495 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATS 495 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHH
Confidence 8889999999999988876543321 1 11223444556788899999999999999999875211 12223455678
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (510)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (510)
.+|.++...|++++|...+++++....... .......++..+|.++...|++++|...+++++.+.....+...+...
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 899999999999999999999999877643 222335577889999999999999999999999998776443334444
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC-
Q 010446 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG- 408 (510)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 408 (510)
..+..+|.++...|++++|...+.+++...... + +......+..+|.++...|++++|...+.++..+......
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 556778999999999999999999999987642 1 2234456678999999999999999999988765432100
Q ss_pred -------------------C----------------C-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCC
Q 010446 409 -------------------K----------------E-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452 (510)
Q Consensus 409 -------------------~----------------~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (510)
. . .......+..++.++...|++++|...+++++...+.. ..
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~ 726 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RL 726 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--Cc
Confidence 0 0 00011124578889999999999999999999986553 23
Q ss_pred ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
......++..+|.++...|+.++|...+.+++++...
T Consensus 727 ~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 727 MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 3466778889999999999999999999999998744
No 31
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.82 E-value=3.1e-16 Score=161.61 Aligned_cols=304 Identities=13% Similarity=0.086 Sum_probs=199.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHH
Q 010446 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (510)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (510)
+..+.+.|++++|..+++++.+. + ...+..++..+...|.+.|++++|..+|+.+.... -.|+..
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~-------G--v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-----v~PD~v- 543 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNA-------G--VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-----VKPDRV- 543 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-----CCCCHH-
Confidence 34455556666666555555432 1 12234566666777777777777777776654421 123322
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (510)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (510)
+|..+...|.+.|++++|.+.+.++..... .-.|+ ..++..+...|.+.|++++|.++|+++.+. +.+
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~ 611 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIK 611 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCC
Confidence 366677777777777777777776654210 01122 346667777788888888888877776553 223
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (510)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (510)
....+|+.+...|.+.|++++|..+|.++.+. | -.|+ ..++..+...|.+.|++++|.++++++.+.
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~------ 678 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ------ 678 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence 34567777888888888888888888876652 1 1222 356777888888888888888888887654
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
+..+. ..++..+...|.+.|++++|.++|++.... ...|+ ..+|+.+...|.+.|++++|.++|+++...
T Consensus 679 -G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 679 -GIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred -CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 21121 235678888899999999998888876432 12233 356888899999999999999999887652
Q ss_pred HHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
.-.|+ ..++..+...+.+.|++++|.+++.++.+
T Consensus 749 ------Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 749 ------GLCPN-TITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred ------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12233 34567777888999999999999888765
No 32
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=146.25 Aligned_cols=282 Identities=16% Similarity=0.199 Sum_probs=226.7
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHH
Q 010446 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL 207 (510)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (510)
++...|...|-......++.-.............-.--..+|.||.+.|-+.+|.+.++..+... ..++ .+.
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-----~~~d---Tfl 260 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-----PHPD---TFL 260 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-----Cchh---HHH
Confidence 35666778887777766665333221122223333444679999999999999999999988654 1232 377
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 010446 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (510)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (510)
.++.+|.+..+...|+..+.+.++.+ |.....+..++.++..++++++|.++|+.+++. ++..+
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nv 324 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDSF--------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINV 324 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhcC--------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccc
Confidence 89999999999999999999988753 556777889999999999999999999999986 56667
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (510)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (510)
.+...+|..|+..++.+-|+.+|++.+.+ |..+ ...++|+|.+++..++++-++..|++++....
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat------- 389 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT------- 389 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-------
Confidence 77778899999999999999999999986 2333 46789999999999999999999999998854
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (510)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (510)
.+...+.+|+|+|.+....|++.-|...|+-++. .++....++++||.+-.+.|+.++|..++..+-..
T Consensus 390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--- 458 (478)
T KOG1129|consen 390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV--- 458 (478)
T ss_pred CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh---
Confidence 3556678999999999999999999999988775 45677899999999999999999999999988764
Q ss_pred HhCCCChhhHHHHHHHH
Q 010446 448 TVGPDDQSISFPMLHLG 464 (510)
Q Consensus 448 ~~~~~~~~~~~~~~~la 464 (510)
.|+..+...+++
T Consensus 459 -----~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 459 -----MPDMAEVTTNLQ 470 (478)
T ss_pred -----Ccccccccccee
Confidence 345555445544
No 33
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.81 E-value=2.7e-16 Score=162.06 Aligned_cols=308 Identities=13% Similarity=0.051 Sum_probs=237.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+......+...|++++|..+++++.+. + ......++..+...|.+.|+.++|..+|+++.... ..|
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~-------G--l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v~P 505 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEA-------G--LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----VEA 505 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CCC
Confidence 334456778889999999988887653 1 23456678899999999999999999999887532 223
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
+. ..|..+...|.+.|++++|...|.+..+.. -.| ...+|..+...|.+.|++++|.+++.++......
T Consensus 506 dv-vTynaLI~gy~k~G~~eeAl~lf~~M~~~G------v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g--- 574 (1060)
T PLN03218 506 NV-HTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP--- 574 (1060)
T ss_pred CH-HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC---
Confidence 33 347888999999999999999998876531 112 2567889999999999999999999988653110
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
-.| ...+++.+...|.+.|++++|.++|+++.+. +.+....+|+.+...|.+.|++++|..+|+++...
T Consensus 575 -i~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-- 643 (1060)
T PLN03218 575 -IDP-DHITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-- 643 (1060)
T ss_pred -CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Confidence 122 2567888999999999999999999987663 22334467888999999999999999999998764
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (510)
+..+. ..++..+...|.+.|++++|.++++++.+. .......++..+...|.+.|++++|.+.|++
T Consensus 644 -----Gv~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 644 -----GVKPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred -----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 22222 236688999999999999999999987652 1223346788999999999999999999998
Q ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
+... .-.|+ ..+|..+...|.+.|++++|.++|+++.+
T Consensus 710 M~~~------g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 710 IKSI------KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7652 12333 45789999999999999999999998754
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.8e-17 Score=145.49 Aligned_cols=324 Identities=15% Similarity=0.157 Sum_probs=245.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+-..+...+..|+|+.|+.+|..++.+ +|.+...+.+...+|...|+|++|..--.+..++. |
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l----------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p 67 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIML----------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------P 67 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHcc----------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------C
Confidence 344667778888888888888888877 66666777778888888888888877776666554 6
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH----------------------------------------------
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE---------------------------------------------- 234 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------------------------------------- 234 (510)
.++..|..+|..+.-.|+|++|+..|.+.++...
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 6667778888888888888888887777665300
Q ss_pred -------------------------Hh----c-------------------CC------------CCh------hHHHHH
Q 010446 235 -------------------------SR----Y-------------------GK------------TSI------LLVTSL 248 (510)
Q Consensus 235 -------------------------~~----~-------------------~~------------~~~------~~~~~~ 248 (510)
+. . .+ +.. ..+.-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 00 0 00 000 123456
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (510)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (510)
..+|...+...++..|+++|.+++++. .....+++.+-+|...|.+.+.+....++++.....-. +...+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klI 297 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLI 297 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHH
Confidence 678999999999999999999999984 33567788999999999999999999988876543311 11225
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc----------------cCCCCChHHHHHHHHHHHHHHHcCChHHH
Q 010446 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN----------------YMSLDDSIMENMRIDLAELLHIVGRGQEG 392 (510)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A 392 (510)
+.++..+|..|...++++.|+.+|.+++.-.+... ...--.+..+.--..-|..++..|+|..|
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 56666788899999999999999999876543200 00000112233334568899999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC
Q 010446 393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472 (510)
Q Consensus 393 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 472 (510)
+..|.+++.. .|+....|.+.|.+|...|++..|+...+.++++ +|.....|..-|.++..+.+
T Consensus 378 v~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 378 VKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHH
Confidence 9999998873 4788899999999999999999999999999885 78889999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 010446 473 DKEAEKLVLEALYIR 487 (510)
Q Consensus 473 ~~~A~~~~~~al~~~ 487 (510)
|++|.+.|+++++..
T Consensus 442 ydkAleay~eale~d 456 (539)
T KOG0548|consen 442 YDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998754
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.3e-17 Score=148.46 Aligned_cols=278 Identities=15% Similarity=0.154 Sum_probs=223.6
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (510)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (510)
+..+++...+..++..++|.+..++.+..++.. +-++.. .-..+| ++...|+..+=..+-.+.++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d----pfh~~~--~~~~ia-~l~el~~~n~Lf~lsh~LV~-------- 306 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD----PFHLPC--LPLHIA-CLYELGKSNKLFLLSHKLVD-------- 306 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC----CCCcch--HHHHHH-HHHHhcccchHHHHHHHHHH--------
Confidence 445667778888889999999999888877654 222222 234566 66777766554433333333
Q ss_pred CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (510)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (510)
..|..+.+|+.+|..|...|++.+|..++.++..+ ++..+.+|...|..+...|..++|+..|..|-++...
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 34667788999999999999999999999999877 6777899999999999999999999999999887633
Q ss_pred HcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (510)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (510)
. + .-...+|.-|...++++-|..+|.+|+.+. |.+|. ++..+|.+....+.+.+|..+|+.+
T Consensus 379 ~----h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-------P~Dpl---v~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 379 C----H----LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-------PSDPL---VLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred C----c----chHHHHHHHHHHhccHHHHHHHHHHHHhcC-------CCcch---hhhhhhheeehHhhhHHHHHHHHHH
Confidence 2 1 223558889999999999999999999984 44544 3488999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446 400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (510)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (510)
+...+... +..+.....+.+||.+|.+++.+++|+.+|++++.+ .|....++..+|-+|..+|+++.|+++
T Consensus 441 l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 441 LEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 97666653 334456678999999999999999999999999985 456677889999999999999999999
Q ss_pred HHHHHHHH
Q 010446 480 VLEALYIR 487 (510)
Q Consensus 480 ~~~al~~~ 487 (510)
|.+++.+.
T Consensus 512 fhKaL~l~ 519 (611)
T KOG1173|consen 512 FHKALALK 519 (611)
T ss_pred HHHHHhcC
Confidence 99998754
No 36
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.79 E-value=2.4e-16 Score=134.22 Aligned_cols=319 Identities=17% Similarity=0.093 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (510)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (510)
++..-+..+..+...|++..|+..|..|++. +|....+++..|.+|...|+-..|+.-+.+++++-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---- 102 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---- 102 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----
Confidence 4555777899999999999999999999987 89999999999999999999999999999998775
Q ss_pred CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010446 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYH 269 (510)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 269 (510)
|+...+....|.++.++|++++|..-|...++......... .......+......+...|++..|+++..
T Consensus 103 ---pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 103 ---PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred ---ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 77777788999999999999999999999987521100000 00112233444556777899999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHH
Q 010446 270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349 (510)
Q Consensus 270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 349 (510)
..+++ .|..+..+...+.||...|+...|+.-++.+-++. .+....++.++.+++..|+.+.++
T Consensus 180 ~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 180 HLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHHHH
Confidence 99987 56778888899999999999999999998887652 334467888999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCChHHHHHHHHH---------HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 010446 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDL---------AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420 (510)
Q Consensus 350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 420 (510)
...++++++ .|++......|-.+ +.-....++|.++++..++.++.-.+ ..+........
T Consensus 244 ~~iRECLKl-------dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~----~~~ir~~~~r~ 312 (504)
T KOG0624|consen 244 KEIRECLKL-------DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE----ETMIRYNGFRV 312 (504)
T ss_pred HHHHHHHcc-------CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc----ccceeeeeehe
Confidence 999999987 56665544333333 23344556677777666666543111 12233445667
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
+..|+..-|++.+|+....+++++ .|+.+.++...|.+|.....|+.|+.-|++|.+.-
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888999999999999999999984 57778899999999999999999999999998753
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=3.8e-15 Score=126.01 Aligned_cols=306 Identities=13% Similarity=0.124 Sum_probs=234.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
-+-.+..+.-..+.++|++.|..+++. ++...++...+|..|...|..+.|+.+.+...... +-...
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~----------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~ 104 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQE----------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFE 104 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhc----------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchH
Confidence 344566667788999999999999886 88999999999999999999999999998877543 22233
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
....++..+|.-|...|-++.|+..|....+. ......++..+..+|....++++|++..++...+-.+
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q--- 173 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---
Confidence 45566899999999999999999999887653 1233467888999999999999999999887776322
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
+.....+..|..++..+....+.+.|...+.+|++. +|....+-..+|.+....|+++.|++.++.+++.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-- 243 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-- 243 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh--
Confidence 234567788899999999999999999999999984 5667778888999999999999999999998875
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (510)
++..+..+...|..+|...|+.++.+.++.++.+.... + .....++..-....-.+.|..++.+
T Consensus 244 -------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g------~---~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 244 -------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG------A---DAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred -------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC------c---cHHHHHHHHHHHhhChHHHHHHHHH
Confidence 46667778889999999999999999999998775321 1 2334455555566667777777766
Q ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHH---hcCChHHHHHHHHHHHH
Q 010446 441 CLDIMTKTVGPDDQSISFPMLHLGITLY---HLNRDKEAEKLVLEALY 485 (510)
Q Consensus 441 al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~ 485 (510)
-+. .+|+....+..+ .... ..|...+....++..+.
T Consensus 308 Ql~--------r~Pt~~gf~rl~-~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 308 QLR--------RKPTMRGFHRLM-DYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHh--------hCCcHHHHHHHH-HhhhccccccchhhhHHHHHHHHH
Confidence 655 356655433322 2222 23445555556555543
No 38
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=4.8e-17 Score=137.49 Aligned_cols=284 Identities=15% Similarity=0.063 Sum_probs=227.1
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh--cCCCchHH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS--LKDDEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (510)
.|....+++. .+++...|...|........++... .+...... ...-..+|.||.+.|-+.+|.+.++.+++..
T Consensus 177 ~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~- 253 (478)
T KOG1129|consen 177 RPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF- 253 (478)
T ss_pred ChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-
Confidence 3444444433 3566778888887766665544322 11111111 2224579999999999999999999998742
Q ss_pred HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (510)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (510)
...+++..++.+|....++..|+..+.+.++. .|..+..+..+++++..++++++|.++|+.++
T Consensus 254 --------~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 254 --------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred --------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 23567888999999999999999999999875 56678888999999999999999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 010446 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (510)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (510)
+. ++....+...+|.-|+..++.+-|+.+|++.+++ +...+. .+.|+|.++...++++-++.
T Consensus 318 k~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-------G~~spe---Lf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 318 KL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-------GAQSPE---LFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred hc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-------cCCChH---HHhhHHHHHHhhcchhhhHH
Confidence 84 4555666777888899999999999999999988 444443 45899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChH
Q 010446 395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 474 (510)
Q Consensus 395 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 474 (510)
.|++++.... .....+.+|+++|.+....|++.-|..+|+-++. .+++...++.+||.+-.+.|+.+
T Consensus 380 sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 380 SFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchH
Confidence 9999998763 2345678999999999999999999999999887 46778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010446 475 EAEKLVLEALYIREIAF 491 (510)
Q Consensus 475 ~A~~~~~~al~~~~~~~ 491 (510)
+|..++..|-.+....+
T Consensus 447 ~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 447 GARSLLNAAKSVMPDMA 463 (478)
T ss_pred HHHHHHHHhhhhCcccc
Confidence 99999999877654443
No 39
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.78 E-value=4.5e-15 Score=127.39 Aligned_cols=346 Identities=14% Similarity=0.089 Sum_probs=267.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
-...+..++...++.+|+..+.+.+..... .......+..+..+...+|.|++++.+--..+...... ++..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-------~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-~ds~ 80 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD-------LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-EDSD 80 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHH-------HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345677889999999999999998877544 44556677778888899999999988765555554442 2334
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
....++.+++..+....++.+++.+-...+.+--...+ ..-......+|..+..++.++++++.|++|+++.....
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~- 156 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND- 156 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC-
Confidence 45667899999999999999999888776654211100 12235566799999999999999999999999987654
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
+......++..||..+....++++|.-+..+|.++.....-.+. .....+++.++..+..+|+.-.|.++.+++.++
T Consensus 157 -D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 157 -DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred -CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33344677889999999999999999999999999877632221 124567888999999999999999999999999
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHH-----
Q 010446 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE----- 433 (510)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----- 433 (510)
.-. ..+.+..+.....+|++|...|+.+.|..-|++|+.+..... +......++...|.+.....-..+
T Consensus 236 al~----~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g--drmgqv~al~g~Akc~~~~r~~~k~~~Cr 309 (518)
T KOG1941|consen 236 ALQ----HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG--DRMGQVEALDGAAKCLETLRLQNKICNCR 309 (518)
T ss_pred HHH----hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 876 467777788889999999999999999999999999887763 344555677777777766554444
Q ss_pred HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 434 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 434 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
|++.-++++++...+. ....+......++.+|..+|.-++=...+..+-+..
T Consensus 310 ale~n~r~levA~~IG--~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 310 ALEFNTRLLEVASSIG--AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred hhHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 9999999999987763 234566778899999999998887777776665443
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=145.52 Aligned_cols=324 Identities=16% Similarity=0.141 Sum_probs=197.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHH
Q 010446 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (510)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (510)
+..+++..+|.+|+.+|+-+++....+. ......++.++|..+.+.|.|+.|+..|+...+.. |....
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsin-----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-------pn~~a 311 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSIN-----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-------PNFIA 311 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccc-----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-------ccHHh
Confidence 3445566678888888888887643322 44556778888888888888888888888766543 33333
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHH---------------------------------------------------
Q 010446 205 ILLHMGSMYSTLENYEKSMLVYQRVINVL--------------------------------------------------- 233 (510)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------------------------------------- 233 (510)
-+++..+++..|+-++-.+.|++.+.+-
T Consensus 312 -~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii 390 (840)
T KOG2003|consen 312 -ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII 390 (840)
T ss_pred -hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 2445555555666655555555554330
Q ss_pred HHhcCCC-----------------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--------------HHhc-CC
Q 010446 234 ESRYGKT-----------------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL--------------ELNR-GT 281 (510)
Q Consensus 234 ~~~~~~~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------~~~~-~~ 281 (510)
.....++ .+.....-.+.+..+.+.|+++.|++.++-.-..- .-.. |.
T Consensus 391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 0000000 00011112234556677788887777654221100 0000 00
Q ss_pred --------------CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHH
Q 010446 282 --------------ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE 347 (510)
Q Consensus 282 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 347 (510)
.+...+.++.+-|.+-+..|++++|.+.|++++. ++.....+++++|..+..+|+.++
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~lde 542 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDE 542 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHH
Confidence 0122234455566666677888888888888875 456677888888888888899999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----------hh---C------
Q 010446 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK----------YK---G------ 408 (510)
Q Consensus 348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~---~------ 408 (510)
|+++|-+...+.... +.++..++.+|..+.+..+|++++-++..+... .+ |
T Consensus 543 ald~f~klh~il~nn----------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 543 ALDCFLKLHAILLNN----------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHHHHHHHHHHHhh----------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 988888877765432 445677788888888888888877766543200 00 0
Q ss_pred -------CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446 409 -------KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (510)
Q Consensus 409 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (510)
...|....+...||..|....-+++|+.+|+++--+ .|....-...++.|+.+.|+|++|.+.|+
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 012333344445566666666666666666666442 34555555678899999999999999998
Q ss_pred HHHHHH
Q 010446 482 EALYIR 487 (510)
Q Consensus 482 ~al~~~ 487 (510)
...+-+
T Consensus 685 ~~hrkf 690 (840)
T KOG2003|consen 685 DIHRKF 690 (840)
T ss_pred HHHHhC
Confidence 876544
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.3e-16 Score=140.44 Aligned_cols=272 Identities=12% Similarity=0.085 Sum_probs=217.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446 133 NKNDAIDLLQANYEAVKEQINAG---NKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (510)
Q Consensus 133 ~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (510)
.|.+|.+.+.+............ ......+.++...|..++..|++-.|...++.++.+... ....|..+
T Consensus 294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-------~~~lyI~~ 366 (606)
T KOG0547|consen 294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-------FNSLYIKR 366 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-------cchHHHHH
Confidence 67888888887766544432111 112345778889999999999999999999999987522 22337889
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 289 (510)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (510)
|.+|....+..+....|.+|.++ +|....+|+..|.+++-++++++|+.-|++++.+ .|..+.+
T Consensus 367 a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~ 430 (606)
T KOG0547|consen 367 AAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYA 430 (606)
T ss_pred HHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHH
Confidence 99999999999999999999886 3555678999999999999999999999999998 6778899
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (510)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (510)
+..++...+++++++++...|+++... -|....+++..|.++..+++|++|++.|++++++.........+
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~- 501 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN- 501 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc-
Confidence 999999999999999999999999874 46677888999999999999999999999999985442000000
Q ss_pred hHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446 370 SIMENMRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (510)
Q Consensus 370 ~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (510)
+..+..-|.+. .-.+++..|+.++++|+++ +|..-.++..||.+..++|+.++|+++|+++..+.+.
T Consensus 502 ---~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 502 ---AAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred ---chhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 11122223222 2358999999999999885 4666678999999999999999999999999987654
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=3.5e-16 Score=153.98 Aligned_cols=251 Identities=10% Similarity=-0.035 Sum_probs=193.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh---------CChHHHHHHHHHHHHhhhhcCCCchHH
Q 010446 132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---------GDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (510)
Q Consensus 132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (510)
+++++|+.++++++++ +|..+.++..+|.++... +++++|...+++++++. |..
T Consensus 275 ~~~~~A~~~~~~Al~l----------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~ 337 (553)
T PRK12370 275 YSLQQALKLLTQCVNM----------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNN 337 (553)
T ss_pred HHHHHHHHHHHHHHhc----------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCC
Confidence 4577999999999987 888888899999887643 34789999999988764 444
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (510)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (510)
..++..+|.++...|++++|+..|++++++ +|....++..+|.++...|++++|+..+++++++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-------- 401 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKL-------- 401 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 556888999999999999999999999986 2555678899999999999999999999999997
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (510)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (510)
.|........++.++...|++++|+..+++++.. ..|.....+.++|.++...|++++|...+.+....
T Consensus 402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---- 470 (553)
T PRK12370 402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---- 470 (553)
T ss_pred CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----
Confidence 3444444555666778899999999999998764 23445567888999999999999999999876443
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010446 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (510)
.+........++..|...| ++|...+++.++...... .+ ...++.+|.-.|+.+.+..+ +++.
T Consensus 471 ------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~--~~------~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 471 ------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID--NN------PGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred ------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh--cC------chHHHHHHHHHhhhHHHHHH-HHhh
Confidence 2222344577888888888 488888888666544321 11 12267788888888888777 6555
Q ss_pred H
Q 010446 443 D 443 (510)
Q Consensus 443 ~ 443 (510)
+
T Consensus 534 ~ 534 (553)
T PRK12370 534 N 534 (553)
T ss_pred c
Confidence 4
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.2e-17 Score=150.75 Aligned_cols=266 Identities=18% Similarity=0.172 Sum_probs=109.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH
Q 010446 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (510)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (510)
+..+..++..|++++|++.+.+.+... .++.....+..+|.+....|+++.|+..+++++... +.
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~--------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----~~--- 76 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI--------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----KA--- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccccccc----cc---
Confidence 356888999999999999997655431 135666888889999999999999999999987653 22
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (510)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (510)
....+..++.+ ...+++++|..+++++.+.. .+ ...+.....++...|+++++...++++....
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------ 140 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD------GD---PRYLLSALQLYYRLGDYDEAEELLEKLEELP------ 140 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T------
T ss_pred ccccccccccc-cccccccccccccccccccc------cc---cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------
Confidence 22335566666 68999999999998876542 11 2345566778899999999999999877431
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (510)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (510)
..+.....+..+|.++...|+.++|+..++++++. .|....+...++.++...|+.+++.+.+........
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~- 211 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP- 211 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-
Confidence 23455778889999999999999999999999996 344556677889999999999998888888776642
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (510)
+++. .+..+|.++...|++++|+.++++++.. +|....++..+|.++...|+.++|..+++++
T Consensus 212 ------~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 212 ------DDPD---LWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp ------TSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT---------------
T ss_pred ------CHHH---HHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccc
Confidence 2222 3467899999999999999999998874 4556677889999999999999999999998
Q ss_pred HHH
Q 010446 442 LDI 444 (510)
Q Consensus 442 l~~ 444 (510)
+..
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 764
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=6.4e-15 Score=139.81 Aligned_cols=316 Identities=11% Similarity=-0.014 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
......|......|+++.|.+.+.++.+. .|.....+...|.++...|+++.|..++.++.+.. ++
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~----------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----p~ 150 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH----------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA----GN 150 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----Cc
Confidence 34566778889999999999999887664 44445566678999999999999999999987543 12
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
.. . .+....+.++...|++++|...+++..+. .|....++..++.++...|++++|.+.+.+..+..
T Consensus 151 ~~-l-~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--- 217 (409)
T TIGR00540 151 DN-I-LVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--- 217 (409)
T ss_pred Cc-h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC---
Confidence 11 1 12344588999999999999999988875 24445678899999999999999999998887651
Q ss_pred cCCCCcchH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446 279 RGTESADLV-LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (510)
Q Consensus 279 ~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (510)
...+... ........-+...+..+++...+.++..... ...+.....+..++..+...|++++|.+.++++++
T Consensus 218 --~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p----~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 218 --LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP----RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC----HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 1122211 1112222222334444445556655554321 11123456778889999999999999999999998
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHHH
Q 010446 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAE 435 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~ 435 (510)
. .+++...... ..........++.+.+++.++++++. +|+.. ..+..+|.++...|++++|.
T Consensus 292 ~-------~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 292 K-------LGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAA 355 (409)
T ss_pred h-------CCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHH
Confidence 7 3333321100 11222233457778888888887763 34444 77889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (510)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 490 (510)
++|+++.... .+|+... +..+|.++.+.|+.++|.+++++++...-.+
T Consensus 356 ~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 356 DAFKNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred HHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 9999543321 1333333 5689999999999999999999998876543
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=1.8e-15 Score=149.03 Aligned_cols=263 Identities=12% Similarity=0.020 Sum_probs=197.4
Q ss_pred HHHHHHHHHHh---hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhh---------hcHHHHHHHHHHHHH
Q 010446 164 ILDIIALGYVY---IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL---------ENYEKSMLVYQRVIN 231 (510)
Q Consensus 164 ~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~ 231 (510)
.++..|..... .+++++|+..+++++++. |....++..+|.++... +++++|...++++++
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34445544433 345779999999988764 44555677888776644 448899999999988
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446 232 VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311 (510)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 311 (510)
+ +|....++..+|.++...|++++|+..+++++++ .|....++..+|.++...|++++|+..++
T Consensus 333 l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 333 L--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred c--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6 3555678889999999999999999999999997 56677889999999999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHH
Q 010446 312 RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE 391 (510)
Q Consensus 312 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 391 (510)
+++++ .|.+ ......++.++...|++++|+..+++++... .++. ...+..+|.++...|++++
T Consensus 397 ~Al~l-----~P~~---~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~------~p~~---~~~~~~la~~l~~~G~~~e 459 (553)
T PRK12370 397 ECLKL-----DPTR---AAAGITKLWITYYHTGIDDAIRLGDELRSQH------LQDN---PILLSMQVMFLSLKGKHEL 459 (553)
T ss_pred HHHhc-----CCCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc------cccC---HHHHHHHHHHHHhCCCHHH
Confidence 99986 2232 2334445666777999999999999987652 1223 3355789999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC
Q 010446 392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471 (510)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 471 (510)
|...+.+... ..+........++..|...| ++|...+++.++..... +.+ ...++.+|.-.|
T Consensus 460 A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g 521 (553)
T PRK12370 460 ARKLTKEIST--------QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNN------PGLLPLVLVAHG 521 (553)
T ss_pred HHHHHHHhhh--------ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHh
Confidence 9999987644 34555567778888888888 48888888876644332 111 133777888899
Q ss_pred ChHHHHHHHHHHHH
Q 010446 472 RDKEAEKLVLEALY 485 (510)
Q Consensus 472 ~~~~A~~~~~~al~ 485 (510)
+.+.|.-+ +++.+
T Consensus 522 ~~~~~~~~-~~~~~ 534 (553)
T PRK12370 522 EAIAEKMW-NKFKN 534 (553)
T ss_pred hhHHHHHH-HHhhc
Confidence 98888776 66654
No 46
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.75 E-value=8.2e-16 Score=156.68 Aligned_cols=293 Identities=15% Similarity=0.090 Sum_probs=219.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
.+..|.+.|++++|...|+++. +....+|+.+...|...|++++|..+|+++.... -.|+..
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~-------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-----~~pd~~ 326 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMP-------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-----VSIDQF 326 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCHH
Confidence 3466778888888888887642 2345678888899999999999999998876431 223333
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (510)
.+..+...+...|++++|.+.+..+++.. .+....++..+...|.+.|++++|...|++..+
T Consensus 327 -t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------- 388 (697)
T PLN03081 327 -TFSIMIRIFSRLALLEHAKQAHAGLIRTG-------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---------- 388 (697)
T ss_pred -HHHHHHHHHHhccchHHHHHHHHHHHHhC-------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------
Confidence 37778888888999999998888876641 122345677888999999999999998887632
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (510)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (510)
+ ...+|+.+...|...|+.++|++.|++..+. | -.|+ ..++..+...+...|..++|.++|+.+.+...
T Consensus 389 ~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g--- 457 (697)
T PLN03081 389 K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----G-VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--- 457 (697)
T ss_pred C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC---
Confidence 1 2467889999999999999999999987753 1 1222 35677788889999999999999988775421
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
..|+ ...|..+..+|.+.|++++|.+++++. +..|+ ..+|..+...+...|+.+.|...+++.++
T Consensus 458 -~~p~----~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 458 -IKPR----AMHYACMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred -CCCC----ccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 1122 235677899999999999999887652 12333 35688888999999999999999888765
Q ss_pred HHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (510)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (510)
+ .|.....|..++.+|...|++++|.+.+++..+.
T Consensus 523 ~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 523 M--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred C--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3 3444567888999999999999999999987654
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=1.2e-17 Score=150.57 Aligned_cols=267 Identities=20% Similarity=0.192 Sum_probs=107.7
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010446 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245 (510)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 245 (510)
..+|.++...|++++|...+.+...... ++.....+..+|.+....+++++|+..|++.+... +...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~-----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~ 78 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIA-----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KANP 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccc--------cccc
Confidence 3669999999999999999966443220 13333557789999999999999999999998753 2233
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (510)
..+..++.+ ...+++++|..+++++.+... ....+..+..++...++++++...++++... +..
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~---------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~ 142 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYERDG---------DPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAA 142 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T--
T ss_pred ccccccccc-ccccccccccccccccccccc---------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCC
Confidence 445566666 689999999999988765421 1234455677889999999999999987742 123
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 405 (510)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 405 (510)
+.....+..+|.++...|+.++|+..++++++. .|+++. +...++.++...|+.+++.+.+.......
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-------~P~~~~---~~~~l~~~li~~~~~~~~~~~l~~~~~~~-- 210 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALEL-------DPDDPD---ARNALAWLLIDMGDYDEAREALKRLLKAA-- 210 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------TT-HH---HHHHHHHHHCTTCHHHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHHC--
Confidence 445677888999999999999999999999998 344444 44678999999999999888887766543
Q ss_pred hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
+.++ ..+..+|.+|...|++++|+.+|++++.. +|.....+..+|.++...|+.++|..++++++.
T Consensus 211 ---~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 ---PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ---HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-----------------
T ss_pred ---cCHH---HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccc
Confidence 1223 35667899999999999999999999874 455566778999999999999999999999887
Q ss_pred HH
Q 010446 486 IR 487 (510)
Q Consensus 486 ~~ 487 (510)
..
T Consensus 277 ~l 278 (280)
T PF13429_consen 277 LL 278 (280)
T ss_dssp --
T ss_pred cc
Confidence 54
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=1.4e-15 Score=134.13 Aligned_cols=205 Identities=16% Similarity=0.117 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (510)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (510)
......+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 94 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----- 94 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 355778899999999999999999999999876 4556788899999999999999999999999985
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (510)
.|.....+.++|.++...|++++|..++++++... ..+.....+..+|.++...|++++|...+++++.
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23334678889999999999999999999998642 1222234567899999999999999999999987
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (510)
.. |.....+..+|.++...|++++|..++++++.. .+.....+..++.++...|+.++|..+.+
T Consensus 164 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 ID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred hC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 52 333567889999999999999999999999885 12334555678899999999999999887
Q ss_pred HHHHH
Q 010446 482 EALYI 486 (510)
Q Consensus 482 ~al~~ 486 (510)
.+...
T Consensus 228 ~~~~~ 232 (234)
T TIGR02521 228 QLQKL 232 (234)
T ss_pred HHHhh
Confidence 76543
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=4.7e-15 Score=131.03 Aligned_cols=286 Identities=15% Similarity=0.129 Sum_probs=220.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhC--ChHHHHHHHHHHHHhhhhcCCC
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG--DLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
-++.+..+.+.|+++.|++.+.-. .+ .+......+-.++...++.+| ++..|..+...++.+.
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~----~~-----kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d------ 486 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVF----EK-----KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID------ 486 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHH----Hh-----ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc------
Confidence 345677889999999999865432 11 112233344566666666644 7888888888887653
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
...+.++.+.|++-+..|++++|.+.|.+++. ++.....+++++|..+..+|+.++|+++|-+...+...
T Consensus 487 -ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n- 556 (840)
T KOG2003|consen 487 -RYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN- 556 (840)
T ss_pred -ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-
Confidence 33455678899999999999999999999986 44566889999999999999999999999998887543
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
.+.++..++.+|..+.+..+|++++.++..+. |....++..||.+|-+.|+-.+|..++-.....
T Consensus 557 -------n~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 557 -------NAEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred -------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 47889999999999999999999999987752 334466788999999999999999998777665
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (510)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (510)
+. .+ ..+...||..|....-+++|+.+|+++--+ .|........++.|+.+.|+|.+|.+.|
T Consensus 622 fp-------~n---ie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 622 FP-------CN---IETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cC-------cc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 32 12 233366899999999999999999998654 4566666778899999999999999999
Q ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC
Q 010446 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472 (510)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 472 (510)
+..-.- -|....++..|.++.-.+|-
T Consensus 684 k~~hrk--------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRK--------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHh--------CccchHHHHHHHHHhccccc
Confidence 876552 35556677777777666664
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=1.1e-15 Score=123.51 Aligned_cols=205 Identities=17% Similarity=0.148 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
..+.+...+|.-|...|++..|...+++|++. +|....++..++.+|...|+.+.|.+.|++|+.+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------ 98 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL------ 98 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------
Confidence 55678889999999999999999999999997 6778899999999999999999999999999985
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (510)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (510)
+|....+++|.|..++.+|++++|...|++|+.. |..+....++.|+|.|..+.|+.+.|..+|++++++
T Consensus 99 --~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 99 --APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD--------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred --CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC--------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 5677789999999999999999999999999874 556666778899999999999999999999999986
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010446 403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (510)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (510)
. |........++..+...|++..|..+++..... .+..+.++....++-...|+-..|-.+=.+
T Consensus 169 d--------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 169 D--------PQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred C--------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3 444566778999999999999999998876652 224556666667777889998888877666
Q ss_pred HHHHH
Q 010446 483 ALYIR 487 (510)
Q Consensus 483 al~~~ 487 (510)
..+.+
T Consensus 233 L~r~f 237 (250)
T COG3063 233 LQRLF 237 (250)
T ss_pred HHHhC
Confidence 55544
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=1.6e-15 Score=122.53 Aligned_cols=204 Identities=18% Similarity=0.138 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
...+.+...+|.-|...|++..|...++++++. +|....++..+|.+|...|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 445667889999999999999999999999986 4677889999999999999999999999999997
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
.|....+++|.|..++.+|++++|...|++|+. .|..+....++.|+|.|..+.|+++.|.++|++++++.
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 677899999999999999999999999999997 36667788899999999999999999999999999983
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (510)
++.+. ....++..+...|++..|..++++.... .+..+..+.....+-...|+-+.|-++=.
T Consensus 170 -------p~~~~---~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 170 -------PQFPP---ALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred -------cCCCh---HHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33332 3367899999999999999998875442 12445666666777788899888877765
Q ss_pred HHHH
Q 010446 440 ICLD 443 (510)
Q Consensus 440 ~al~ 443 (510)
+...
T Consensus 232 qL~r 235 (250)
T COG3063 232 QLQR 235 (250)
T ss_pred HHHH
Confidence 5544
No 52
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=4.9e-14 Score=132.52 Aligned_cols=332 Identities=14% Similarity=0.048 Sum_probs=226.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
....+..+...|+++.+...+.++..... ............+..+...|++++|...+++++... +.++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~ 77 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALA-------ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----PRDL 77 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcH
Confidence 44466777788899998877777766522 233455567778899999999999999999988764 2222
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
.++.. +..+...|++..+.....+++.. ..+.++.....+..+|.++...|++++|+..+++++++
T Consensus 78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------ 143 (355)
T cd05804 78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------ 143 (355)
T ss_pred ---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 22333 55566666665555555555543 23456777778889999999999999999999999997
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
.|.....+..+|.++...|++++|+.++++++..... ........+..+|.++...|++++|+..+++++..
T Consensus 144 --~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~-- 215 (355)
T cd05804 144 --NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP-- 215 (355)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 3445678899999999999999999999999876321 11223456778999999999999999999998543
Q ss_pred hhccCCCCChHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446 361 DSNYMSLDDSIMENM--RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (510)
.+........ ...+...+...|....+..+ +.+........ +. +.....-...+.++...|+.++|...+
T Consensus 216 -----~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 216 -----SAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred -----ccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1211222111 11233344445554444433 22222211110 11 112222236788889999999999999
Q ss_pred HHHHHHHHHHh-CCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010446 439 RICLDIMTKTV-GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (510)
Q Consensus 439 ~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 493 (510)
+......+... ..............|.++...|++++|...+..++.+...+=|+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 98877654410 01123345566788999999999999999999999999776443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.73 E-value=3.6e-15 Score=131.50 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
......+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 94 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----- 94 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 445667899999999999999999999999875 2444678889999999999999999999999986
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
.|.....+.++|.++...|++++|+..+++++... ..+.....+.++|.++...|++++|...+.+++...
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34456788899999999999999999999998741 233445678889999999999999999999998872
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (510)
++. ...+..+|.++...|++++|..++++++... +.....+..++.++...|+.++|..+.+
T Consensus 166 -------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 166 -------PQR---PESLLELAELYYLRGQYKDARAYLERYQQTY--------NQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred -------cCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333 2356789999999999999999999988761 2234455678899999999999999877
Q ss_pred HHHH
Q 010446 440 ICLD 443 (510)
Q Consensus 440 ~al~ 443 (510)
.+..
T Consensus 228 ~~~~ 231 (234)
T TIGR02521 228 QLQK 231 (234)
T ss_pred HHHh
Confidence 6654
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=9.6e-15 Score=131.83 Aligned_cols=227 Identities=12% Similarity=0.086 Sum_probs=166.5
Q ss_pred hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010446 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (510)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (510)
.+..+.++..+.+++... ..+++..+..++.+|.+|...|++++|+..|++++++ .|....++..+|.+
T Consensus 39 ~~~~e~~i~~~~~~l~~~---~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 39 TLQQEVILARLNQILASR---DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred chHHHHHHHHHHHHHccc---cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 345567777777766543 2333555777999999999999999999999999985 35557889999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 010446 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 334 (510)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 334 (510)
+...|++++|+..|++++++ .|....++.++|.++...|++++|+..++++++. .++++. ...+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~-~~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPY-RALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-HHHH--
Confidence 99999999999999999987 5667789999999999999999999999999985 234432 1111
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH
Q 010446 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414 (510)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 414 (510)
..+....+++++|+..+.++.... .+ +.. ..+.+....|+..++ ..++.+........ ...+..
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~~------~~--~~~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~ 235 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEKL------DK--EQW-----GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERL 235 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhhC------Cc--ccc-----HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHH
Confidence 123456789999999998766431 11 111 134555567776554 24444332211100 012445
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 415 VTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
..++..+|.++...|++++|+.+|+++++.
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 678999999999999999999999999984
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=6.4e-14 Score=132.21 Aligned_cols=303 Identities=12% Similarity=0.069 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII-ALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (510)
...+..|......|++++|.+...++-+. .+.+..++.+ +......|+++.|..++.++.+.. +
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----~ 149 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADH-----------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----D 149 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----C
Confidence 33556777778899999999766654331 1223333444 556589999999999999987643 1
Q ss_pred CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (510)
+ ..... ....+.++...|++++|+..+++..+. .|....++..++.+|...|++++|++.+.+..+..
T Consensus 150 ~-~~~~~-~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-- 217 (398)
T PRK10747 150 N-DQLPV-EITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-- 217 (398)
T ss_pred c-chHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--
Confidence 1 22222 234588999999999999999998775 24445778889999999999999999998877642
Q ss_pred hcCCCCcchHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010446 278 NRGTESADLVL-----PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (510)
Q Consensus 278 ~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (510)
...+.... ++..+........+ .+.+.+..+...+ ..+....+...++..+...|+.++|...+
T Consensus 218 ---~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~----~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 218 ---VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSR----KTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCH----HHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 11111111 22222111112222 2223333222111 12334566777899999999999999999
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH
Q 010446 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432 (510)
Q Consensus 353 ~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 432 (510)
+++++. .+ ++... +.......++.+++++..++.++ .+|+....+..+|.++...|+++
T Consensus 287 ~~~l~~-------~~-~~~l~-----~l~~~l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 287 LDGLKR-------QY-DERLV-----LLIPRLKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHhc-------CC-CHHHH-----HHHhhccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHH
Confidence 998873 23 22222 12222345899999998888765 35677788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
+|.++|+++++. .|+. ..+..++.++.++|+.++|..+|++++.+...
T Consensus 346 ~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 346 EASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 999999999984 3333 34578999999999999999999999987643
No 56
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.71 E-value=5.5e-15 Score=150.67 Aligned_cols=295 Identities=14% Similarity=0.055 Sum_probs=184.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
....+..|.+.|++++|..+|+++.+ ....+|+.+...|...|++++|..+|+++...... ++..
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~-------------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~--p~~~ 225 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE-------------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD--AEPR 225 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC-------------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC--CChh
Confidence 34455778888999999888887531 23457888899999999999999999988653211 1100
Q ss_pred H-------------------------------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446 201 L-------------------------------LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (510)
Q Consensus 201 ~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (510)
. ...++..+...|.+.|++++|...|++... ....+|+
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~~~vt~n 294 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----------KTTVAWN 294 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----------CChhHHH
Confidence 0 011245677888899999999988876421 1345788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (510)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (510)
.+...|...|++++|+.+|+++.+. .......++..+...+...|++++|...+..+++. ..+...
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~-------g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~ 360 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDS-------GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDI 360 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCe
Confidence 8999999999999999999887543 11223456777778888888888888877776653 112223
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (510)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (510)
.+++.+...|.+.|++++|...|++..+ ++ ..+|+.+...|.+.|+.++|+++|++.....
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g------ 421 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR---------KN----LISWNALIAGYGNHGRGTKAVEMFERMIAEG------ 421 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC---------CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 4556667777777777777777665421 11 1245666777777777777777776654321
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (510)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (510)
..|+ ..++..+...+...|..++|.++|+.+.+.. +..|+ ...|..+...|.+.|+.++|.+.++
T Consensus 422 ~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p~-~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 422 VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKPR-AMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCCC-ccchHhHHHHHHhcCCHHHHHHHHH
Confidence 1222 2345555556666666666666666554310 11111 2234445555555555555555544
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=3.7e-14 Score=120.12 Aligned_cols=270 Identities=17% Similarity=0.156 Sum_probs=208.6
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh--h
Q 010446 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--L 243 (510)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~ 243 (510)
+.-|.-+.-..+.++|+..|..+++. +|....+...+|++|...|+.+.|+...+..++. ++.+ .
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~-------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~q 105 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE-------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQ 105 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc-------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHH
Confidence 34455666788999999999887753 3667777899999999999999999988776642 2222 4
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 010446 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (510)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (510)
...++..+|.-|+..|-++.|+..|....+. ......++..|..+|....++++|++..++...+..+ +
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~ 174 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---T 174 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---c
Confidence 5678899999999999999999999988763 2233567888999999999999999998887775322 2
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (510)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (510)
....++..|+.++..+....+.+.|...+.++++..++ ...+-..+|.+....|+++.|++.++.+++-
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~----------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ- 243 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK----------CVRASIILGRVELAKGDYQKAVEALERVLEQ- 243 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc----------ceehhhhhhHHHHhccchHHHHHHHHHHHHh-
Confidence 34558888999999999999999999999999987332 2344467999999999999999999988763
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (510)
++.....+...|..+|...|+.++.+..+.++.+.. ..+ .+...++..-....-.+.|..+..+-
T Consensus 244 ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~------~g~---~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 244 ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN------TGA---DAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred ------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc------CCc---cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 455667888899999999999999999999998842 112 22344455555555556666665554
Q ss_pred HH
Q 010446 484 LY 485 (510)
Q Consensus 484 l~ 485 (510)
+.
T Consensus 309 l~ 310 (389)
T COG2956 309 LR 310 (389)
T ss_pred Hh
Confidence 43
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=1.1e-14 Score=131.43 Aligned_cols=228 Identities=14% Similarity=0.035 Sum_probs=167.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (510)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (510)
.+..+.++..+.+++.... .+.+..+..++.+|.+|...|++++|+..|++++++ .|....+++.+|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~ 106 (296)
T PRK11189 39 TLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGI 106 (296)
T ss_pred chHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Confidence 3566777777777765321 233456788999999999999999999999999987 5667899999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH
Q 010446 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 375 (510)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 375 (510)
++...|++++|+..|++++++ .|....++.++|.++...|++++|++.++++++. .|+++.. ..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~~~~~-~~ 170 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPNDPYR-AL 170 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH-HH
Confidence 999999999999999999985 4555678899999999999999999999999987 4444431 12
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (510)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (510)
+ ..+....+++++|+..+.++.... ++.. + ..+.++...|+..++ ..++.+.+...... .-.|.
T Consensus 171 ~---~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~ 234 (296)
T PRK11189 171 W---LYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAER 234 (296)
T ss_pred H---HHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHH
Confidence 1 223445788999999997765321 1111 1 134455556666544 23444432111100 01244
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
...++.++|.++..+|++++|+.+|++++++.
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999754
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=8e-14 Score=140.08 Aligned_cols=144 Identities=11% Similarity=-0.063 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-h--h
Q 010446 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK-Y--K 407 (510)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~ 407 (510)
+...+|..|...+++++|+.+|+.++.-.... ...+.. ......|...|...+++++|..++++..+...- . .
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~---~~~~~~-~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKT---FRNSDD-LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccc---cCCCcc-hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 33445778888888888888888876542110 011111 122356788889999999999999987762210 0 1
Q ss_pred ----CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446 408 ----GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (510)
Q Consensus 408 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (510)
...+|+.......++.++...|++.+|++.+++.+.. .|.....+..+|.++...|.+.+|...++.+
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1245677788888999999999999999999998773 4555667788999999999999999999777
Q ss_pred HHH
Q 010446 484 LYI 486 (510)
Q Consensus 484 l~~ 486 (510)
..+
T Consensus 477 ~~l 479 (822)
T PRK14574 477 ESL 479 (822)
T ss_pred hhh
Confidence 654
No 60
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.70 E-value=3.4e-13 Score=142.90 Aligned_cols=315 Identities=14% Similarity=0.101 Sum_probs=234.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHH
Q 010446 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (510)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (510)
..+..+...|++++|...+.++.+...... ..............++.++...|++++|...+++++..... .+....
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~ 490 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRN-IELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL--TWYYSR 490 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccC-cccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--ccHHHH
Confidence 345566788999999999988766532210 00011224455666888999999999999999998875321 122223
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (510)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (510)
..+...+|.++...|++++|...+++++...... + +......++..+|.++...|++++|..++++++.+.....+..
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQH-D-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 4556789999999999999999999999987754 2 2234456788999999999999999999999999987764433
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (510)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (510)
.+.....+..+|.++...|++++|...+.+++.+.+... ......++..+|.++...|++++|...+.++..+....
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 343445567889999999999999999999999876431 23345677789999999999999999999987764431
Q ss_pred ccC--------------------------------C---CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010446 363 NYM--------------------------------S---LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (510)
Q Consensus 363 ~~~--------------------------------~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (510)
... . .........+..++.++...|++++|...+++++.......
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 000 0 00000111235788899999999999999999999865542
Q ss_pred CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (510)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (510)
.....+.++..+|.++...|+.++|...+.+++++...
T Consensus 726 --~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 726 --LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred --chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 33456678889999999999999999999999998644
No 61
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=2.6e-13 Score=136.50 Aligned_cols=324 Identities=10% Similarity=0.005 Sum_probs=225.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+...+..+...|++++|+++|+++++. .|..+.++..++..+...++.++|+..++++.... |
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~----------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-------p 167 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKK----------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-------P 167 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-------c
Confidence 444577888999999999999999988 77778888888999999999999999998876553 3
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH---------------------------------------------
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES--------------------------------------------- 235 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------------------- 235 (510)
.... +..++.++...++..+|+..++++++....
T Consensus 168 ~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~ 246 (822)
T PRK14574 168 TVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA 246 (822)
T ss_pred chHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence 3222 234455555567776788888888765100
Q ss_pred ------------------------------hcC---C---CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 236 ------------------------------RYG---K---TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 236 ------------------------------~~~---~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
... . .++....+....-.++...|++.+++..|+....
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~------ 320 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA------ 320 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh------
Confidence 000 0 0001111122222233334444444444443321
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
+..+.-..+....|..|...+++++|+.+|++++.-..... ..+........|-..|...+++++|..++++..+..
T Consensus 321 -~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 321 -EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred -cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 12222234667789999999999999999999876321100 112223334567888999999999999999988632
Q ss_pred H-hhc----cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010446 360 K-DSN----YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434 (510)
Q Consensus 360 ~-~~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 434 (510)
. ... .....++........++.++...|++.+|++.+++.+.. .|........+|.++...|.+.+|
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 2 000 011234555677788999999999999999999998764 466678888999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
+..++.+..+ +|....+...+|.++..+|++.+|.....++++..
T Consensus 470 ~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 470 EQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999877763 56667788999999999999999999998887755
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=1.4e-13 Score=131.91 Aligned_cols=285 Identities=19% Similarity=0.134 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (510)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (510)
...+...|...+..|++++|+.++.++++.. |....+|+.||.+|..+|+.+++....-.|-.+ .
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~--- 203 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----N--- 203 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----C---
Confidence 4566777888888999999999999988765 666777999999999999999999888776543 2
Q ss_pred hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (510)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (510)
|.....|..++.....+|++++|.-+|.+|+.. .|.........+.+|.++|+...|...|.+.+.....
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-- 273 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-- 273 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc--
Confidence 222367888999999999999999999999997 4556778888999999999999999999999886320
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (510)
.+...........+..+...++-+.|.+.++.++...... ...+ .+..++.++....+++.|.........
T Consensus 274 -~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~----~~~e----d~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 274 -VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE----ASLE----DLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred -hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc----cccc----HHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 0111233344455777888888899999999988842221 1111 224567777777777777665543332
Q ss_pred ----------------------HHH----------------------------------HhhCCCChhHHHHHHHHHHHH
Q 010446 402 ----------------------ITE----------------------------------KYKGKEHPSFVTHLLNLAASY 425 (510)
Q Consensus 402 ----------------------~~~----------------------------------~~~~~~~~~~~~~~~~la~~~ 425 (510)
+.. ........+....+..++..|
T Consensus 345 r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al 424 (895)
T KOG2076|consen 345 RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADAL 424 (895)
T ss_pred cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Confidence 000 000001223455678899999
Q ss_pred HhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
...|++.+|+.++...... ........|..+|.+|..+|.+++|+++|++++.+.
T Consensus 425 ~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~ 479 (895)
T KOG2076|consen 425 TNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA 479 (895)
T ss_pred HhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999887762 223346789999999999999999999999998743
No 63
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.69 E-value=6e-14 Score=120.61 Aligned_cols=314 Identities=14% Similarity=0.047 Sum_probs=241.0
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446 165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL 244 (510)
Q Consensus 165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 244 (510)
...-|.-++...++++|+..+.+.+..... .......+-.+..+..++|.|++++.+---.++.+... .+....
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~ 82 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFL 82 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 344556667788889998888877665422 12333446677788899999999988877767666554 344566
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 010446 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (510)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (510)
..++.+++..+....++.+++.+-+..+.+- +... ..-......+|..+..++.+++++++|++|+.+.....
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~-- 156 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND-- 156 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--
Confidence 7889999999999999999998887776642 2111 22235566789999999999999999999999886652
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (510)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (510)
+......++..||.++....++++|.-+..+|.++.......+.+......+++.++..+..+|+.-.|.++.+++.++.
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 22235677889999999999999999999999999887533333344456677899999999999999999999999998
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHH-----HHH
Q 010446 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEK 478 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~ 478 (510)
-... +.+..+.....+|.+|...|+.+.|..-|++|..+.... .+......++...|.++....-..+ |++
T Consensus 237 l~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale 312 (518)
T KOG1941|consen 237 LQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALE 312 (518)
T ss_pred HHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhH
Confidence 7763 567778888999999999999999999999999988765 2344555677777877776555554 999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 010446 479 LVLEALYIREIAFGKDS 495 (510)
Q Consensus 479 ~~~~al~~~~~~~~~~~ 495 (510)
.-++++++..++ |..+
T Consensus 313 ~n~r~levA~~I-G~K~ 328 (518)
T KOG1941|consen 313 FNTRLLEVASSI-GAKL 328 (518)
T ss_pred HHHHHHHHHHHh-hhhH
Confidence 999999998775 4343
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=8.8e-14 Score=121.64 Aligned_cols=298 Identities=14% Similarity=0.078 Sum_probs=230.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
.+....-.++...|...+--+- . ...-+.+...+..+|.+++..|++.+|+..|+++..+. |...
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le-~-------~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-------py~i 266 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLH-D-------NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-------PDNV 266 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHH-h-------hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-------hhhh
Confidence 3444445555555554332221 1 22267778899999999999999999999999987653 6666
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (510)
...-..|.++...|+++.-..+....+.+.. ..+.-++.-+...+...++..|+.+-+++++. .
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~ 330 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--------YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------E 330 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------C
Confidence 6677788888899999887777666665432 12334556677888899999999999999986 5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (510)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (510)
+....++..-|.++...|+.++|.-.|+.|..+ .|....+|..|-.+|...|++.||....+.++..+...
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s- 401 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS- 401 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-
Confidence 556788889999999999999999999999875 35667889999999999999999999999999886542
Q ss_pred cCCCCChHHHHHHHHHH-HHHHH-cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446 364 YMSLDDSIMENMRIDLA-ELLHI-VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (510)
+.++.-+| .++.. ----++|..++++++.+ .|....+...+|.++...|++++++.++++.
T Consensus 402 ---------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 402 ---------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred ---------hhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 33334443 33332 22347899999998874 5777888889999999999999999999999
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
+..+ ++ ...+..||.++...+.+++|+++|..|+++-
T Consensus 465 L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 465 LIIF--------PD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred Hhhc--------cc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9853 22 2456889999999999999999999998754
No 65
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1e-14 Score=133.14 Aligned_cols=208 Identities=14% Similarity=0.142 Sum_probs=180.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
-+..|..+.+.|+..+|.-.|+.++.. +|.++++|..||.+....++-..|+..+++++++. |
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkq----------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P 350 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQ----------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-------P 350 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhh----------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------C
Confidence 355788899999999999999999987 99999999999999999999999999999999875 6
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh-----------cC----------------------CCCh--hHH
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-----------YG----------------------KTSI--LLV 245 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~----------------------~~~~--~~~ 245 (510)
....++..||..|...|.-.+|+.++.+-+....+. .+ ...+ ...
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence 667779999999999999999999998876542000 00 0001 234
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (510)
.+...||.+|...|+|++|+++|+.|+.. .|.....|+.||-.+....+.++|+..|++|+++ .
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------q 494 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------Q 494 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------C
Confidence 56778999999999999999999999986 6778899999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (510)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (510)
|..+++.+|||..|+.+|.|++|.++|-.|+.+.+.
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 788899999999999999999999999999999776
No 66
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-14 Score=126.98 Aligned_cols=291 Identities=15% Similarity=0.077 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (510)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (510)
.+.......+..++...+|..|+..+..|+++ .|+.+..|.+.+.+++..|+|++|.-..++..++-..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~- 115 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG- 115 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-
Confidence 34455667888899999999999999999998 7777899999999999999999999998887766422
Q ss_pred CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH--------HHHHHhcCC--CChhHHHHHHHHHHHHhhcCCHHHHH
Q 010446 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI--------NVLESRYGK--TSILLVTSLLGMAKVLGSIGRAKKAV 265 (510)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~ 265 (510)
........+.++...++..+|...++..- .....+... ..|....+...-+.++...|++++|.
T Consensus 116 ------~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 116 ------FSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred ------ccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 22235667777777777777776665221 111111111 12444556667789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHH
Q 010446 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCA 341 (510)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~ 341 (510)
..--..+++ ++....++..-|.++...++.+.|+..|++++.+-..... ...+.....+..-|.-.++
T Consensus 190 ~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 190 SEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred HHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 877777665 4556788888899999999999999999999986322100 0123344556677888999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010446 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 421 (510)
Q Consensus 342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 421 (510)
.|++.+|.+.|..++.+.+ .+....+.+|.+.|.+..+.|+..+|+.-.+.++.+ ++....++...
T Consensus 262 ~G~y~~A~E~Yteal~idP------~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~r 327 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDP------SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRR 327 (486)
T ss_pred ccchhHHHHHHHHhhcCCc------cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHH
Confidence 9999999999999999833 234456778999999999999999999999999986 46678899999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHH
Q 010446 422 AASYSRSKNFVEAERLLRICLDIM 445 (510)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~ 445 (510)
|.++...++|++|.+.|+++++..
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998753
No 67
>PLN03077 Protein ECB2; Provisional
Probab=99.65 E-value=3.2e-13 Score=141.21 Aligned_cols=140 Identities=15% Similarity=0.087 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (510)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (510)
.+|+.+...|...|+.++|+++|++..+. ...|+.. ++..+...+.+.|++++|..+|++..+.. .
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd~~----T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----g 620 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPDEV----TFISLLCACSRSGMVTQGLEYFHSMEEKY-----S 620 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCcc----cHHHHHHHHhhcChHHHHHHHHHHHHHHh-----C
Confidence 45777788888888888888888887653 1233332 34556677888899999999988766332 1
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH------------HHH-------------HHHhCCCChhhHHHHHHHH
Q 010446 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICL------------DIM-------------TKTVGPDDQSISFPMLHLG 464 (510)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------~~~-------------~~~~~~~~~~~~~~~~~la 464 (510)
..|+ ...|..+..++.+.|++++|.+.++++- ..+ ++.. .-.|.....+..++
T Consensus 621 i~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~-~l~p~~~~~y~ll~ 698 (857)
T PLN03077 621 ITPN-LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF-ELDPNSVGYYILLC 698 (857)
T ss_pred CCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hhCCCCcchHHHHH
Confidence 2233 3678888999999999999998887741 000 0111 11244455667788
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 010446 465 ITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~al~ 485 (510)
.+|...|++++|.+..+...+
T Consensus 699 n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 699 NLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHCCChHHHHHHHHHHHH
Confidence 888888888888887776654
No 68
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.7e-14 Score=130.45 Aligned_cols=268 Identities=16% Similarity=0.146 Sum_probs=190.1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010446 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245 (510)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 245 (510)
+..|..+++.|+..+|.-.|+.++.. +|..+.+|..||.+....++-..|+..+++++++ +|...
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq-------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nl 353 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ-------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNL 353 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh-------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccH
Confidence 46788889999999999999988753 3888888999999999999999999999999886 36667
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--GTE-SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
.++..||..|...|.-.+|..++.+-+....+.. ... .+.... ...-......+..-.++|..+.. ..
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~---~~-- 424 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAAR---QL-- 424 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHH---hC--
Confidence 8899999999999999999999988876421100 000 000000 00000000001111222222221 11
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (510)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (510)
.......+...||.+|...|+|++|+++|+.|+.. .|++ ..+|+.||-.+....+.++|+..|++|+++
T Consensus 425 -~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-------~Pnd---~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 425 -PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-------KPND---YLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred -CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-------CCch---HHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 11134467788999999999999999999999987 3333 457899999999999999999999999986
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh--hHHHHHHHHHHHHhcCChHHH
Q 010446 403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS--ISFPMLHLGITLYHLNRDKEA 476 (510)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A 476 (510)
.|..++++++||..|..+|.|++|.++|-.|+.+.++..+..... .-.+|..|-.++...++.+-+
T Consensus 494 --------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 494 --------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred --------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 477889999999999999999999999999999987743322211 112344444555666665533
No 69
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.65 E-value=5.6e-13 Score=113.95 Aligned_cols=284 Identities=16% Similarity=0.084 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (510)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (510)
......++.++..|...|+-.-|+.-+.+++++ .|+...+....|.+++.+|.+++|+.-|+.++.....
T Consensus 69 p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s 138 (504)
T KOG0624|consen 69 PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS 138 (504)
T ss_pred chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC
Confidence 345667999999999999999999999999998 8999999999999999999999999999998865421
Q ss_pred cCCCch--------HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHH
Q 010446 195 LKDDEP--------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 266 (510)
Q Consensus 195 ~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 266 (510)
.+.... .-...+......+...|++..|+.+....+++ .|..+..+...+.+|...|+...|+.
T Consensus 139 ~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 139 NGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred cchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHH
Confidence 111000 00112334455567789999999999998886 36667788899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH---------HH
Q 010446 267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL---------AH 337 (510)
Q Consensus 267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------a~ 337 (510)
-++.+-++ ..+....++.++.+++..|+.+.++...++++++ .++|......|-.+ +.
T Consensus 211 Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 211 DLKQASKL--------SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 99988776 3445678899999999999999999999999985 34544433333322 23
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccCCCC-ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010446 338 AKCANGNAEEAVELYKKALRVIKDSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT 416 (510)
Q Consensus 338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 416 (510)
-....++|.++++..++.++. .|. .+........+..|+..-|++.+|+....+++.+ .|+.+.
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~-------ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~ 342 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKN-------EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQ 342 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhc-------CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHH
Confidence 345667777777777777665 233 4444455566788999999999999999998874 577788
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 417 HLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
++...|..|.....|+.|+.-|++|.+.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999885
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=1.9e-12 Score=122.27 Aligned_cols=320 Identities=16% Similarity=0.120 Sum_probs=224.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh----CC-------hHHHHHHHHHHHHhhh
Q 010446 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GD-------LKFVQSLLDMMSGIVD 193 (510)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~-------~~~A~~~~~~~~~~~~ 193 (510)
..+.-..|.+++++++..+++....... ..-.+..+..+|.+|..+ .. ..++++.++++.+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~-----~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~-- 473 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQR-----SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF-- 473 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhh-----hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--
Confidence 3455678899999999999998653322 455567778888877532 11 23444455555443
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (510)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (510)
++.+| .+.+.++.-|..+++.+.|..+.++++++. ....+.++..++.++...+++.+|+...+.+++
T Consensus 474 --d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 474 --DPTDP---LVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred --CCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34444 447899999999999999999999999873 224467889999999999999999999999988
Q ss_pred HHHHhcCCCC------------cchHHH-HHHHH----------------------HHHHHcCChHHHHHHHHHHHHHHH
Q 010446 274 ILELNRGTES------------ADLVLP-LFSLG----------------------SLFIKEGKAVDAESVFSRILKIYT 318 (510)
Q Consensus 274 ~~~~~~~~~~------------~~~~~~-~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~~ 318 (510)
-.....+-.+ .....+ ...|+ .+....++..+|.+...++.....
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 7544211000 000000 00000 011111233344444444433332
Q ss_pred HH----------------cCCCChH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 010446 319 KV----------------YGENDGR--VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380 (510)
Q Consensus 319 ~~----------------~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la 380 (510)
.. .+++++. ....+...+..+...++.++|..++.++-.+. +.....++..|
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~----------~l~~~~~~~~G 691 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID----------PLSASVYYLRG 691 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc----------hhhHHHHHHhh
Confidence 11 0112222 23345567888889999999999998887773 44467788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH--HHHHHHHHHHHHhCCCChhhHH
Q 010446 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER--LLRICLDIMTKTVGPDDQSISF 458 (510)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~ 458 (510)
.++...|++.+|.+.|..|+.+ +|+...+...+|.++.+.|+..-|.. ++..++++ +|...+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~e 755 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHE 755 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHH
Confidence 9999999999999999999886 34555677889999999999888877 89999885 577778
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
+|+.+|.++..+|+.++|.++|+-|+++.+.
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999997644
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.6e-13 Score=117.87 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (510)
...+...+..++..|++++|+..|+++.-+ +|.........|..+...|+++.-..+......+.+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~---- 297 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK---- 297 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhC----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh----
Confidence 344677889999999999999999999877 888889999999999999999988887777665541
Q ss_pred CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (510)
..+.-|+.-+...+...++..|+.+-+++++. ++....++..-|..+...|+.++|+-.|+.|..+
T Consensus 298 ---~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--- 363 (564)
T KOG1174|consen 298 ---YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML--- 363 (564)
T ss_pred ---cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc---
Confidence 22333667778888999999999999999875 2444667888999999999999999999999887
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH-HHHHHC-CCHHHHHHHHHHH
Q 010446 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAKCAN-GNAEEAVELYKKA 355 (510)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~-g~~~~A~~~~~~a 355 (510)
.|....+|..|-.+|...|++.+|....+.++... +..+.++..+| .++... .--++|.++++++
T Consensus 364 -----ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 364 -----APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred -----chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 45667899999999999999999999999888864 33445666665 444332 3347899999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (510)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (510)
+.+ .|....+-..+|+++...|++..++.++++.+..+. + ...+..||.+....+.+.+|.
T Consensus 431 L~~----------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--------D-~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 431 LKI----------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--------D-VNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred hcc----------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--------c-cHHHHHHHHHHHHhhhHHHHH
Confidence 887 223334447899999999999999999999988642 2 256788999999999999999
Q ss_pred HHHHHHHHH
Q 010446 436 RLLRICLDI 444 (510)
Q Consensus 436 ~~~~~al~~ 444 (510)
++|..|+.+
T Consensus 492 ~~y~~ALr~ 500 (564)
T KOG1174|consen 492 EYYYKALRQ 500 (564)
T ss_pred HHHHHHHhc
Confidence 999999985
No 72
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=6e-13 Score=126.38 Aligned_cols=280 Identities=13% Similarity=0.047 Sum_probs=195.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEV-AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
++-.+......|+++.|..++.++.+. .|... .+....+.++...|+++.|...++.+.+..
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~----------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~------- 183 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAEL----------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA------- 183 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 445678888999999999999998765 33322 344456899999999999999999987764
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
|....++..++.++...|++++|.+.+.+..+.. ..++. ...........+...+..+++.+.+.++.+....
T Consensus 184 P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~- 257 (409)
T TIGR00540 184 PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR- 257 (409)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH-
Confidence 3333557899999999999999999998887651 12222 2222222222223444455555566655544211
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
..+.....+..++..+...|++++|.+.++++++.. ++++..... ..........++.+.+.+.++++++.
T Consensus 258 ---~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 258 ---HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred ---HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 122457788889999999999999999999999852 222221101 11223334468888898888888876
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (510)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (510)
.|+++. ...+..+|.++.+.|++++|.++|+++.... ..|+... +..+|.++...|+.++|.+++
T Consensus 329 -------~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 329 -------VDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred -------CCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Confidence 455553 3455789999999999999999999543332 1343333 558999999999999999999
Q ss_pred HHHHHHHHH
Q 010446 439 RICLDIMTK 447 (510)
Q Consensus 439 ~~al~~~~~ 447 (510)
++++...-.
T Consensus 394 ~~~l~~~~~ 402 (409)
T TIGR00540 394 QDSLGLMLA 402 (409)
T ss_pred HHHHHHHhc
Confidence 999886543
No 73
>PLN03077 Protein ECB2; Provisional
Probab=99.62 E-value=2.8e-13 Score=141.72 Aligned_cols=163 Identities=13% Similarity=0.031 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010446 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (510)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (510)
..+++.+...|.+.|++++|.+.|++..+ + ...+|+.+...|...|+.++|+.+|+++... ..
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------~~ 486 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----------K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT------LK 486 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC------CC
Confidence 34555566666666666666666654321 1 1235666666677777777777777776531 12
Q ss_pred CCChHHHHH-------------------------------HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010446 367 LDDSIMENM-------------------------------RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (510)
Q Consensus 367 ~~~~~~~~~-------------------------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (510)
|+....... .+.+...|.+.|+.++|...|++. ....
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------------~~d~ 554 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------------EKDV 554 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------------CCCh
Confidence 332222111 123345666666666666665542 1123
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
.+|+.+...|...|+.++|+++|+++.+. .-.|+. .++..+-..+.+.|+.++|..+|++..+
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 56777888888888888888888877652 112222 3345555667777777777777776653
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=2.9e-12 Score=120.52 Aligned_cols=295 Identities=15% Similarity=0.073 Sum_probs=200.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
....+..+...|++++|...++++++. .|....++.. +..+...|++..+.....+++.. ..+..|
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~----------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~ 111 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDD----------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL---WAPENP 111 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc---cCcCCC
Confidence 445677889999999999999999987 5555555554 66666666665555544444433 245556
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
.....+..+|.++..+|++++|+..++++++.. |....++..+|.++...|++++|+.++++++.....
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--- 180 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--- 180 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---
Confidence 666667889999999999999999999999863 333567889999999999999999999999886421
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA--MCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
+.......+..+|.++...|++++|+..+++++... +........ ...+...+...|....+..+ +.+...
T Consensus 181 -~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~ 253 (355)
T cd05804 181 -SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADY 253 (355)
T ss_pred -CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHH
Confidence 122234567789999999999999999999985431 111112111 11223334445543333333 222222
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010446 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERL 437 (510)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (510)
.... .+. ..........+.++...|+.++|...++.......... ..............+.++...|++++|...
T Consensus 254 ~~~~---~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~ 329 (355)
T cd05804 254 AAWH---FPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALEL 329 (355)
T ss_pred HHhh---cCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHH
Confidence 1110 111 11122224688888999999999999998877665410 011223455667789999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 010446 438 LRICLDIMTKTVGP 451 (510)
Q Consensus 438 ~~~al~~~~~~~~~ 451 (510)
+..++.......|.
T Consensus 330 L~~al~~a~~~ggs 343 (355)
T cd05804 330 LGPVRDDLARIGGS 343 (355)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999988766443
No 75
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.8e-14 Score=122.09 Aligned_cols=287 Identities=15% Similarity=0.048 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (510)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (510)
.+.-....|..++...+|.+|+..+..++... |..+..|.+.+..++..|+|++|....++.+++-
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k------- 113 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK------- 113 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecC-------
Confidence 34445567778889999999999999999876 4446668899999999999999999998887752
Q ss_pred ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHH--------HHHHHhcCC--CCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 010446 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI--------TILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVF 310 (510)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 310 (510)
+.........+.++...++..+|...++..- ...+..... ..|........-+.|+...|++++|...-
T Consensus 114 -d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 114 -DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred -CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 2334456667777777777777776655221 111111111 12444555566788999999999998877
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH---------HHHHHHHHHH
Q 010446 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI---------MENMRIDLAE 381 (510)
Q Consensus 311 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---------~~~~~~~la~ 381 (510)
-..+++ ++....++...|.++...++.+.|+..|++++.+ +|++.. ....+..-|+
T Consensus 193 ~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-------dpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 193 IDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-------DPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred HHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-------ChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 666653 4556677788899999999999999999999987 344332 2344556688
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH
Q 010446 382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461 (510)
Q Consensus 382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 461 (510)
-..+.|++.+|.+.|.+++.+... +....+..|.+.|.+....|+..+|+.-.+.++.+ ++..+.++.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall 325 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALL 325 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHH
Confidence 888999999999999999987533 23456778999999999999999999999999986 678889999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 462 HLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
..|.++...++|++|.+.|+++++....
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999986644
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.8e-12 Score=117.77 Aligned_cols=260 Identities=18% Similarity=0.177 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
..-+.+...+...++..|+..|..++++ . .....+.+.+.+|+..|.+.+.+.....+.+.......+.
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el----------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALEL----------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhH----------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 3556778889999999999999999998 4 4556677888899999999888888877766543333333
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
..++.++..+|..|...++++.|+.+|++++...+. ..+.......++++...+...-+
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----------------~~~ls~lk~~Ek~~k~~e~~a~~----- 353 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----------------PDLLSKLKEAEKALKEAERKAYI----- 353 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----------------HHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 446666777899999999999999999998775322 23333444455555444433322
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
.|..+.--..-|..++..|+|..|+..|.+++.. .|.....|.|.|.+|..+|.+..|+...+.++++
T Consensus 354 ---~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL- 421 (539)
T KOG0548|consen 354 ---NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL- 421 (539)
T ss_pred ---ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3444555566689999999999999999998874 5778889999999999999999999998888877
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (510)
++.....|..-|.++..+.+|++|.+.|+++++. +|....+...+..+...+.......+.++
T Consensus 422 ---------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 422 ---------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 4455677888899999999999999999998874 35555666666666665444444444444
Q ss_pred H
Q 010446 440 I 440 (510)
Q Consensus 440 ~ 440 (510)
.
T Consensus 485 r 485 (539)
T KOG0548|consen 485 R 485 (539)
T ss_pred h
Confidence 4
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=1.1e-12 Score=115.40 Aligned_cols=182 Identities=14% Similarity=0.049 Sum_probs=148.1
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (510)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (510)
..+.....+..+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+..++++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--- 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--- 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Confidence 345667889999999999999999999999998753 455666678899999999999999999999999987
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhhCCCChhHHH--------------HHH
Q 010446 362 SNYMSLDDSIMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVT--------------HLL 419 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~ 419 (510)
.|+++....++..+|.++... |++++|+..+++++... +.++.... ...
T Consensus 100 ----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 100 ----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred ----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHH
Confidence 345555556778899999876 78999999999988653 22222111 124
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
.+|.+|...|++.+|+..++++++.. +++|....++..+|.++...|++++|..+++....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67899999999999999999999853 45677788999999999999999999998877654
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=1.8e-11 Score=113.59 Aligned_cols=320 Identities=14% Similarity=0.100 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
.++..+...+..++|.+.+...++.+.. .|++++++...|..+...|+-++|......++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k----------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d------- 71 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK----------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND------- 71 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh----------CCccchhHHhccchhhcccchHHHHHHHHHHhccC-------
Confidence 3677888889999999999999988875 88889999999999999999999999998877532
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
+....+|..+|.++....+|++|+++|+.|+.+ .++....+..++....++++++-....-.+.++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----- 138 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----- 138 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----
Confidence 333456899999999999999999999999986 2455677888888888999998888777777765
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC-------------------------------ChH-
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN-------------------------------DGR- 327 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~- 327 (510)
.|..-..|...+..+...|++..|....+...........+. .+.
T Consensus 139 ---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i 215 (700)
T KOG1156|consen 139 ---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI 215 (700)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH
Confidence 344556777888888888888888877766554432110000 000
Q ss_pred --HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH-HHHHHHHH----------HHHHHc-CC-----
Q 010446 328 --VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM-ENMRIDLA----------ELLHIV-GR----- 388 (510)
Q Consensus 328 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~la----------~~~~~~-g~----- 388 (510)
-.......+.++..++++++|...|...+... |+.... ......+| .+|... .+
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 11122234667778888888888888777652 222111 11111111 001000 00
Q ss_pred --------------hHHHH-----------------------------HHHHHHHHHHHHhhCC-------------CCh
Q 010446 389 --------------GQEGR-----------------------------ELLEECLLITEKYKGK-------------EHP 412 (510)
Q Consensus 389 --------------~~~A~-----------------------------~~~~~al~~~~~~~~~-------------~~~ 412 (510)
+.+.. .+.++.+..+....+. ...
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 00000 0111111111111111 122
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
...+++..++.-+...|+++.|..+...|++ ..|...+.+..-|+++...|+.++|..++.++.++-
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 3456777889999999999999999999987 468889999999999999999999999999987653
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=1.2e-12 Score=115.07 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (510)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (510)
+.....++.+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+..++++++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---- 100 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---- 100 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence 4567789999999999999999999999998862 3345556788999999999999999999999999863
Q ss_pred CCCChHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH--------------HHHH
Q 010446 322 GENDGRVGMAMCSLAHAKCAN--------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENM--------------RIDL 379 (510)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------------~~~l 379 (510)
++++....++..+|.++... |++++|++.+++++... |++.....+ ...+
T Consensus 101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667888899999876 88999999999998773 333322111 2367
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
|.++...|++.+|+..+++++... ++.|....++..+|.++...|++++|..+++....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 899999999999999999998764 34567788999999999999999999998876654
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=6.7e-12 Score=118.58 Aligned_cols=264 Identities=14% Similarity=0.079 Sum_probs=185.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEV-AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
.-.+......|+++.|..++.++.+. .|+.. ......+.++...|++++|...++++.+.. |
T Consensus 122 llaA~aA~~~g~~~~A~~~l~~A~~~----------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-------P 184 (398)
T PRK10747 122 LLAAEAAQQRGDEARANQHLERAAEL----------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-------P 184 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc----------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------C
Confidence 33456669999999999999999865 33332 233344889999999999999999987664 3
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT-----SLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (510)
....++..++.+|...|++++|+..+.+..+.. ..++.... ++..+........+ .+.+.+..+..
T Consensus 185 ~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~l 255 (398)
T PRK10747 185 RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-----VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQ 255 (398)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhC
Confidence 334557888999999999999999998877642 11122111 22222221112222 22233322221
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010446 276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (510)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (510)
. ...+........++..+...|+.++|...++++++. +.++.....+. ....++.+++++.+++.
T Consensus 256 p----~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~~-----~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 256 S----RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLIP-----RLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred C----HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHHh-----hccCCChHHHHHHHHHH
Confidence 1 123445677888999999999999999999999872 23443332222 23459999999999888
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (510)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (510)
++. .|+++. .+..+|.++...|++++|.++|+++++. .|+. ..+..++.++...|+.++|.
T Consensus 321 lk~-------~P~~~~---l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 321 IKQ-------HGDTPL---LWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred Hhh-------CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHH
Confidence 765 445543 4577999999999999999999999875 2333 34567999999999999999
Q ss_pred HHHHHHHHHH
Q 010446 436 RLLRICLDIM 445 (510)
Q Consensus 436 ~~~~~al~~~ 445 (510)
.+|++++.+.
T Consensus 382 ~~~~~~l~~~ 391 (398)
T PRK10747 382 AMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.4e-10 Score=103.49 Aligned_cols=342 Identities=13% Similarity=0.123 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
..++.....+...|+|++|.....+.+.. .|+...++..--.+....+.|++|+...+.-...
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~----------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------- 75 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSI----------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------- 75 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhc----------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-------
Confidence 34667778888999999999999998876 5777778888888889999999998655542211
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL--- 275 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 275 (510)
.......+..+.|.++.+..++|+..++-+ + ..+ ...+...|.+++++|+|++|...|+...+-.
T Consensus 76 -~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~-------~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 76 -LVINSFFFEKAYCEYRLNKLDEALKTLKGL-D-------RLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred -hhcchhhHHHHHHHHHcccHHHHHHHHhcc-c-------ccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 111111267888999999999999988721 1 111 3355667999999999999999998774310
Q ss_pred --------------------HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh-------HH
Q 010446 276 --------------------ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-------RV 328 (510)
Q Consensus 276 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~ 328 (510)
.+............++|.|.++...|+|.+|++.+++++.++++.+..++. ..
T Consensus 144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 111111223356678999999999999999999999999998877544322 24
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHH-HHHHH-----------
Q 010446 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE-GRELL----------- 396 (510)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~----------- 396 (510)
..+...++.++..+|+.++|...|...+... ..|.+..+.+-+||..+-....-++. ++..+
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~------~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN------PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc------CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 4567788999999999999999999887762 34444555444554433222111110 00000
Q ss_pred --------------------------HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446 397 --------------------------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (510)
Q Consensus 397 --------------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (510)
.++.++.... ....|..................+.+|.+++...-+
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l-p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~------- 369 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL-PGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD------- 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC-CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-------
Confidence 0011111111 112222221111222222222245556555554433
Q ss_pred CCChhh-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-cCCCCcchhHHHHh
Q 010446 451 PDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLPGKLLTVW 504 (510)
Q Consensus 451 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~ 504 (510)
.+|.. ..+...++.+...+|+++.|+..+...++..... ..-.|.+..+.++-
T Consensus 370 -~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv 424 (652)
T KOG2376|consen 370 -GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIV 424 (652)
T ss_pred -cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHH
Confidence 34443 5567888899999999999999999766544433 33344444444443
No 82
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.48 E-value=1.5e-11 Score=110.37 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
..+..+...|..|...|++++|...|.++.....+. .+....+.++...+.+|... ++++|+.+++++++++....
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G- 108 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG- 108 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence 345667788899999999999999999999988774 33346677888888887666 99999999999999998754
Q ss_pred CCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
.....+.++..+|.+|... |++++|+++|++|+++++... .......++..+|.++...|+|++|++.|++.....
T Consensus 109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 3455678899999999999 999999999999999998752 233466788899999999999999999999987753
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHHHHHH
Q 010446 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAERL 437 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~ 437 (510)
.+. +.........+...+.+++..|+...|...+++........ .+..-......|-..+.. ...+++|+.-
T Consensus 186 l~~---~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 186 LEN---NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp CCH---CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred hcc---cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 221 11122334455677889999999999998888765442211 123334455556665543 3346666666
Q ss_pred HHHH
Q 010446 438 LRIC 441 (510)
Q Consensus 438 ~~~a 441 (510)
|...
T Consensus 260 ~d~~ 263 (282)
T PF14938_consen 260 YDSI 263 (282)
T ss_dssp HTTS
T ss_pred Hccc
Confidence 6543
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.9e-09 Score=99.38 Aligned_cols=333 Identities=13% Similarity=0.086 Sum_probs=210.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh---------
Q 010446 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV--------- 192 (510)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------- 192 (510)
++.+.+.++.+..++|+..++- + ++....++...|.+++++|+|++|..+|+...+-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~-~------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG-L------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc-c------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 6889999999999999998872 1 33335577888999999999999999998874311
Q ss_pred ---------------hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHH
Q 010446 193 ---------------DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLG 250 (510)
Q Consensus 193 ---------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~ 250 (510)
...+.........+++.+.++...|+|.+|++.+++++.++++.+..++. .+..+...
T Consensus 150 ~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 150 ANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred HHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 11111112244568999999999999999999999999988876544322 35567788
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH-HHHHHH------------------
Q 010446 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFS------------------ 311 (510)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~------------------ 311 (510)
++.++..+|+..+|...|...+... ..|.+..+.+-+||-.+-....-++. ++..++
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999887752 23445555555555433222221110 000000
Q ss_pred -------------------HHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 010446 312 -------------------RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372 (510)
Q Consensus 312 -------------------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 372 (510)
++.++... .....|..................+.+|.+++....+- .+.. .
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~-------~p~~--s 375 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG-------HPEK--S 375 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc-------CCch--h
Confidence 01111111 11122221111111111122222344444444443222 2222 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC--CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK--EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (510)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (510)
..+...++.+...+|+++.|++.+...+......... ..|.++ ..+-..|...++.+-|...+.+++..+.....
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 3455678899999999999999998555333222211 233332 23445677888888899999999998877643
Q ss_pred CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
. .+.....+..++..-.+.|+-++|...+++.+.
T Consensus 453 ~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 453 G-SIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred c-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 3 355556677788888888999999999999876
No 84
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.48 E-value=6.9e-12 Score=112.48 Aligned_cols=226 Identities=15% Similarity=0.071 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
..+..+...|..|...|++++|.+.|.++.+...+.. +....+..+...+.+|... ++++|+.+++++++++....
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G- 108 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG- 108 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence 3455566678888999999999999999999987743 3445667788888887766 99999999999999998752
Q ss_pred CCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 323 ENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (510)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (510)
.....+.++..+|.+|... |++++|+++|++|.+++... ..+.....++..+|.++...|+|++|++.|++...
T Consensus 109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3345788999999999999 99999999999999999873 35556677889999999999999999999999876
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh--cCChHHHHHH
Q 010446 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKL 479 (510)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~ 479 (510)
...... .........+...+.++...|++..|...+++....... -.+.........|-.++.. ...+++|+.-
T Consensus 184 ~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 184 KCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp TCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred Hhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 432210 012233345667788999999999999988887653211 1123334455566555543 2334444444
Q ss_pred HH
Q 010446 480 VL 481 (510)
Q Consensus 480 ~~ 481 (510)
|.
T Consensus 260 ~d 261 (282)
T PF14938_consen 260 YD 261 (282)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 85
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=2e-10 Score=106.80 Aligned_cols=309 Identities=13% Similarity=0.040 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
..+++-+..+.+.+.++-|+..|..+++. .|....+|...+..--.-|..++-..+++++....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv----------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~------ 580 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV----------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC------ 580 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh----------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------
Confidence 34666777788888888888888888877 55566667777666677788888888888887765
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
|..-..+...+..++..|+...|...+.++++.. |..-..+..-..+.....+++.|..++.++...
T Consensus 581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--------pnseeiwlaavKle~en~e~eraR~llakar~~---- 647 (913)
T KOG0495|consen 581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--------PNSEEIWLAAVKLEFENDELERARDLLAKARSI---- 647 (913)
T ss_pred -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----
Confidence 3333446777888888899999999999988752 333455666667778889999999999988764
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
..+..++..-+.+...+++.++|+++++++++.+ |.....|..+|.++...++.+.|.+.|...++.
T Consensus 648 -----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 648 -----SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred -----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 2345677777888888999999999999999853 666788899999999999999999999888776
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (510)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (510)
+.. . .-.|..++.+-.+.|+...|...++++.- .+|.....|......-.+.|+.+.|....
T Consensus 715 cP~------~----ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 715 CPN------S----IPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred CCC------C----chHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 432 1 22457788999999999999999988754 35666677777778888899999999999
Q ss_pred HHHHHHHHHHh--------CCCC--------------hhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 439 RICLDIMTKTV--------GPDD--------------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 439 ~~al~~~~~~~--------~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
.+|++-+.... -..+ .....++..+|..+....++++|.++|.+++.+.
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 88887543210 0000 1122356778999999999999999999998754
No 86
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=5.5e-10 Score=103.93 Aligned_cols=275 Identities=14% Similarity=0.059 Sum_probs=220.1
Q ss_pred CCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446 155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (510)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (510)
+....+.-.++..-+..+...+.++-|..+|..+++.+ |..-.+|...+..-...|..++-..++++++...
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~- 580 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC- 580 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-
Confidence 55566677788888888888888999999998888876 3334446666666667788888888999998764
Q ss_pred HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (510)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (510)
|..-..+...+..+...|+...|...+.++.+. +|..-..+..-..+.....+++.|..++.++.
T Consensus 581 -------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 581 -------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred -------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 223345666778888899999999999999886 45556667666778888999999999999987
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 010446 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (510)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (510)
.. ..+..+++.-+.+...+++.++|+.+++++++.+ +.....|..+|+++..+++.+.|..
T Consensus 646 ~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----------p~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 646 SI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----------PDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred cc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----------CchHHHHHHHhHHHHHHHHHHHHHH
Confidence 63 2234667777888888999999999999999884 3335567889999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChH
Q 010446 395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 474 (510)
Q Consensus 395 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 474 (510)
.|...+.. -|.....|..|+.+-...|+..+|...++++.- .+|.....|......-.+.|+.+
T Consensus 707 aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 707 AYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHH
Confidence 99887664 356667888999999999999999999998865 46777777777888888999999
Q ss_pred HHHHHHHHHHHHH
Q 010446 475 EAEKLVLEALYIR 487 (510)
Q Consensus 475 ~A~~~~~~al~~~ 487 (510)
.|.....+|++-+
T Consensus 771 ~a~~lmakALQec 783 (913)
T KOG0495|consen 771 QAELLMAKALQEC 783 (913)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998744
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=1.4e-09 Score=103.87 Aligned_cols=292 Identities=14% Similarity=0.098 Sum_probs=186.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
++-.+..+...|++++|++++++.... -.+....+-..|.++..+|++++|...+...+... |
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~----------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------P 69 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ----------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------P 69 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh----------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------C
Confidence 455667788999999999999875544 56677788899999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHhcCC--------CCh----------------hHHHHHHHH
Q 010446 201 LLDAILLHMGSMYSTL-----ENYEKSMLVYQRVINVLESRYGK--------TSI----------------LLVTSLLGM 251 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~--------~~~----------------~~~~~~~~l 251 (510)
+....+..+..+.... .+.+.-...|++....+.....+ ... .+.....++
T Consensus 70 dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~l 149 (517)
T PF12569_consen 70 DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNL 149 (517)
T ss_pred CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3333344444444222 13444455555443322110000 000 011122233
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHhcC--------CCCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 252 AKVLGSIGRAKKAVEIYHRVITILELNRG--------TESA-DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
-..|....+..-...+........+.... ...| ...++++.+|..|...|++++|+.+.+++++.
T Consensus 150 k~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------ 223 (517)
T PF12569_consen 150 KPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------ 223 (517)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------
Confidence 33333222222112222222221111100 1122 23567889999999999999999999999984
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (510)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (510)
.|..+..+...|.++-..|++.+|.+.++.+..+.. .+.. +....+..+.+.|+.++|...+..-..-
T Consensus 224 --tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-------~DRy---iNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 224 --TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-------ADRY---INSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-------hhHH---HHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 577788999999999999999999999999987732 2222 3356788889999999998876543221
Q ss_pred HHHhhCC-C---ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446 403 TEKYKGK-E---HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (510)
Q Consensus 403 ~~~~~~~-~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (510)
.. ++ . .....+.....|.+|.+.|++..|+..|..+..++.....
T Consensus 292 ~~---~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 292 DV---DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CC---CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 00 00 0 1122344456799999999999999999999999887643
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=2.4e-10 Score=108.37 Aligned_cols=261 Identities=16% Similarity=0.149 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH
Q 010446 135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS 214 (510)
Q Consensus 135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (510)
.++++.++++++. ++.++.+.+.++.-|..+++.+.|..+.++++++. +.+ ...+|..++.++.
T Consensus 461 ~kslqale~av~~----------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~---~~~---~~~~whLLALvlS 524 (799)
T KOG4162|consen 461 KKSLQALEEAVQF----------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN---RGD---SAKAWHLLALVLS 524 (799)
T ss_pred HHHHHHHHHHHhc----------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc---CCc---cHHHHHHHHHHHh
Confidence 3445555555544 66667899999999999999999999999998874 222 2445889999999
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH------------------
Q 010446 215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE------------------ 276 (510)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------ 276 (510)
.++++.+|+...+.+++.+...+.. ......+-...++.++|+..+...+..++
T Consensus 525 a~kr~~~Al~vvd~al~E~~~N~~l--------~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk 596 (799)
T KOG4162|consen 525 AQKRLKEALDVVDAALEEFGDNHVL--------MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLK 596 (799)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhhhh--------chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhh
Confidence 9999999999999998876442111 11111122223444444444444444433
Q ss_pred -------------------------HhcC----------------CCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 277 -------------------------LNRG----------------TESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (510)
Q Consensus 277 -------------------------~~~~----------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (510)
.... ++++. ....+...+..+...++.++|..++.++
T Consensus 597 ~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 597 AGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred cccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 1100 01111 1123445677788888889998888888
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 010446 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393 (510)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (510)
-.+ .+.....|+..|..+..+|++.+|.+.|..++.+ .|++.. +...+|.++.+.|+..-|.
T Consensus 677 ~~~--------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-------dP~hv~---s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 677 SKI--------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-------DPDHVP---SMTALAELLLELGSPRLAE 738 (799)
T ss_pred Hhc--------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-------CCCCcH---HHHHHHHHHHHhCCcchHH
Confidence 775 3667788999999999999999999999999987 455544 3477999999999887777
Q ss_pred H--HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446 394 E--LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (510)
Q Consensus 394 ~--~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (510)
. ++..++++ +|....+|+.+|.++..+|+.++|.++|+.++++-
T Consensus 739 ~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 739 KRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 7 88888875 56777899999999999999999999999999864
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=3.5e-10 Score=107.88 Aligned_cols=297 Identities=15% Similarity=0.079 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (510)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (510)
..+++.....++...|++++|+.+++...... .+...++...|.++..+|++++|...|...++.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------- 67 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQI-------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------- 67 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 34566777888899999999999997755433 444555788999999999999999999999876
Q ss_pred ChhHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHhcCC--------C----------------CcchHHHHH
Q 010446 241 SILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVITILELNRGT--------E----------------SADLVLPLF 291 (510)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~--------~----------------~~~~~~~~~ 291 (510)
+|+....+..+..+..... +.+.-..+|++....+.+...+ . ...+.....
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~ 147 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS 147 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 2444555555655552222 3445555555443332111000 0 001122233
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHH--cC------CCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446 292 SLGSLFIKEGKAVDAESVFSRILKIYTKV--YG------ENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (510)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~------~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (510)
++-.+|....+..--...+.......+.. +. ...|. ...+++.+|..|...|++++|+++++++++.
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---- 223 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---- 223 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Confidence 33333432222222222222222211111 00 12232 4678899999999999999999999999987
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010446 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (510)
.|.....+...|.++...|++.+|...++.|..+. ...-.+....+..+.+.|+.++|...+..-.
T Consensus 224 ------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 224 ------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred ------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 34446778899999999999999999999987653 2222344556778889999999988765432
Q ss_pred HHHHHHh-CC-CCh---hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010446 443 DIMTKTV-GP-DDQ---SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (510)
Q Consensus 443 ~~~~~~~-~~-~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 494 (510)
. .. ++ .+. ...+.....|.+|.+.|++..|++.|....+++.....+.
T Consensus 290 r----~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 290 R----EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred C----CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 2 11 01 111 1233345679999999999999999999999998875543
No 90
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.41 E-value=1.9e-09 Score=104.55 Aligned_cols=413 Identities=12% Similarity=0.036 Sum_probs=257.1
Q ss_pred hcccccccccccccccchhhHHHhhhhcccccCCCcccchhhhhhhccCC----CCCchHHhhhhhhhhhhcccccchHH
Q 010446 39 ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGF----SAPNDFARSKTLHDHSSNLWDGMNDF 114 (510)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (510)
..+.+.+...+.|+..|+++.+|+...|.+.++..|...+...+....-| ..-+.|.|++.+|.......-.. ..
T Consensus 264 eVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~-~~ 342 (894)
T COG2909 264 EVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR-EL 342 (894)
T ss_pred HHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc-cc
Confidence 45678889999999999999999999999999999999888877663333 34466778888776654221111 11
Q ss_pred HHHHHH-HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446 115 ERQLLE-LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (510)
Q Consensus 115 ~~~~~~-l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (510)
..+... ..+.+..+...|..++|++..-.|-+ ....+..+...+.-....++..--....+.. ..
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d-----------~~~aa~lle~~~~~L~~~~~lsll~~~~~~l---P~ 408 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAGD-----------PEMAADLLEQLEWQLFNGSELSLLLAWLKAL---PA 408 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhCCC-----------HHHHHHHHHhhhhhhhcccchHHHHHHHHhC---CH
Confidence 223333 44455788899999999986554321 2223334444555555555544333333221 00
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010446 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (510)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (510)
..-..+|.. ....++......++++|.....++........ .......+...-..|.+....|++++|+++.+.++
T Consensus 409 ~~l~~~P~L---vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al 485 (894)
T COG2909 409 ELLASTPRL---VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL 485 (894)
T ss_pred HHHhhCchH---HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 001122332 34456677778999999999888776553310 00111344445556788889999999999999998
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHH--H
Q 010446 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV--E 350 (510)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--~ 350 (510)
...... .....+.++..+|.+..-.|++++|..+..++.++.+... .......+....+.++..+|+...|. .
T Consensus 486 ~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~~~ 560 (894)
T COG2909 486 VQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQEK 560 (894)
T ss_pred Hhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 875332 2334466788899999999999999999999999987751 22334556677788999999433332 2
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010446 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430 (510)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 430 (510)
.+...-..... ..+.+.....++..+...+.+ ++.+..-....+++..... +........+..|+.++...|+
T Consensus 561 ~~~~~~~q~l~---q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gd 633 (894)
T COG2909 561 AFNLIREQHLE---QKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGD 633 (894)
T ss_pred HHHHHHHHHhh---hcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCC
Confidence 23222222111 122233333344444444443 6666655555555543321 1122222334589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhh-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446 431 FVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEA 483 (510)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (510)
.++|...+.+......... .+++. +.++.........+|+.++|.....+.
T Consensus 634 l~~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 634 LDKALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 9999999999888765431 23332 233333344555789999998887773
No 91
>PLN02789 farnesyltranstransferase
Probab=99.40 E-value=5.4e-10 Score=100.69 Aligned_cols=217 Identities=13% Similarity=0.030 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHhcCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRGTE 282 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 282 (510)
.++..+-.++...+.+++|+..+.+++.+ +|....++...+.++..+| ++++++..+.+++..
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-------- 101 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-------- 101 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------
Confidence 33444444556678899999999999986 3666788999999999998 689999999999986
Q ss_pred CcchHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 283 SADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
+|....+++..+.++...|+. ++++.+++++++. +|....++...+.++...|++++|++++.++++..
T Consensus 102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d- 172 (320)
T PLN02789 102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED- 172 (320)
T ss_pred CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-
Confidence 566677899999999888874 6788888888874 56777899999999999999999999999999872
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----cc
Q 010446 361 DSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SK 429 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g 429 (510)
+.+ ..+++..+.++... |.+ ++++.+..+++.+ .|....++..++.++.. .+
T Consensus 173 ------~~N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 173 ------VRN---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred ------CCc---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccc
Confidence 222 34667778777665 333 4677777777764 45666788888888887 35
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhc
Q 010446 430 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470 (510)
Q Consensus 430 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 470 (510)
+..+|.+.+.+++. ..+....++..|+.+|...
T Consensus 236 ~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 236 SDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 56778887777655 2455566778889998763
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.1e-08 Score=90.12 Aligned_cols=304 Identities=17% Similarity=0.121 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
...+.|-.-+..|+|.+|.....++-+. .+.....+..-+.+-...||++.+-.++.++-+.. + +
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~----------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~----~-~ 150 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEH----------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA----G-D 150 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhc----------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC----C-C
Confidence 3445666667899999999988885543 34444456666777888999999999999887653 1 2
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
+... +....+.+...+|+++.|..-..++++.. |....++.....+|...|++.+...+..+..+.- ..
T Consensus 151 ~~l~-v~ltrarlll~~~d~~aA~~~v~~ll~~~--------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l 219 (400)
T COG3071 151 DTLA-VELTRARLLLNRRDYPAARENVDQLLEMT--------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LL 219 (400)
T ss_pred chHH-HHHHHHHHHHhCCCchhHHHHHHHHHHhC--------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CC
Confidence 3333 36778899999999999999999988752 4445667778899999999999888877654421 00
Q ss_pred CCCCcchHHHHHHHHH--HHHHcCChHHHHH--HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010446 280 GTESADLVLPLFSLGS--LFIKEGKAVDAES--VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~--~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (510)
++++ ..-+-+.+. ++.+.++-+.+.. .+-+.+.... ..+|. ....++.-+...|+.++|.+..+.+
T Consensus 220 --~~~e-~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l----r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 220 --SDEE-AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL----RNDPE---LVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred --ChHH-HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh----hcChh---HHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1222 222222221 1222333222222 1111111111 12343 3345677789999999999999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (510)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (510)
++.. .++. .. ..++ ...-++...=++..++.+. .+|+....+..||.+|.+.+.|.+|.
T Consensus 290 Lk~~-------~D~~-L~---~~~~--~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 290 LKRQ-------WDPR-LC---RLIP--RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HHhc-------cChh-HH---HHHh--hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHH
Confidence 8872 2322 11 1111 1244566666666666554 24555578889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
.+|+.+++. ......+..+|.++.++|+.++|.+.+++++.+..+
T Consensus 349 ~~leaAl~~---------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 349 EALEAALKL---------RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHhc---------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 999998873 122456789999999999999999999999966544
No 93
>PLN02789 farnesyltranstransferase
Probab=99.40 E-value=5e-10 Score=100.89 Aligned_cols=209 Identities=13% Similarity=0.031 Sum_probs=162.2
Q ss_pred HHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (510)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (510)
++...+.+++|+..+.+++.+. |....++...+.++...| ++++++..+++++.. +|....++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~ 110 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWH 110 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhH
Confidence 3445678899999999998775 666778899999999998 689999999999875 355566788
Q ss_pred HHHHHHhhcCCH--HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 010446 250 GMAKVLGSIGRA--KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (510)
Q Consensus 250 ~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (510)
..+.++...|+. ++++.++.++++. +|....++...+.++...|++++|+.++.++++. ++.
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~ 174 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVR 174 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCC
Confidence 889888888874 6788999999886 6677899999999999999999999999999985 455
Q ss_pred HHHHHHHHHHHHHHC---CCH----HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHH
Q 010446 328 VGMAMCSLAHAKCAN---GNA----EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELL 396 (510)
Q Consensus 328 ~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 396 (510)
...+++..+.+.... |.+ ++++.+..+++.. .|++ ..+|..++.++.. .++..+|.+.+
T Consensus 175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-------~P~N---~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-------NPRN---ESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-------CCCC---cCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 567888888887765 333 4677888888877 3333 3456778888877 34567788887
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010446 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (510)
Q Consensus 397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (510)
.+++. ..+....++..|+.+|...
T Consensus 245 ~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 245 LEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 77655 2345566788889998763
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.36 E-value=5.4e-10 Score=108.72 Aligned_cols=338 Identities=14% Similarity=0.085 Sum_probs=212.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
...++-.+.+.++...|+..++.++.. +|....++..+|.+|...|.+..|++.|.++..+. |
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~----------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P 627 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRT----------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------P 627 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcC----------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------c
Confidence 334677788899999999999999988 99999999999999999999999999999987764 5
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
......+..+.+....|+|.+|+..+...+....... ......+.++..++..+...|=+.+|..+++++++.+.-...
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5445568889999999999999999998877654321 112356777888888888888888888888887765421110
Q ss_pred ----------------------------------------------CCC----------------cchHHHHHHHHHHHH
Q 010446 281 ----------------------------------------------TES----------------ADLVLPLFSLGSLFI 298 (510)
Q Consensus 281 ----------------------------------------------~~~----------------~~~~~~~~~la~~~~ 298 (510)
++. ......++++|..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 000 011234566666655
Q ss_pred H--------cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh
Q 010446 299 K--------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370 (510)
Q Consensus 299 ~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (510)
+ +.+...|+.++.+++.+.-.. -..++.||.+ ...|++.-|...|-+++... +
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann--------~~~WnaLGVl-sg~gnva~aQHCfIks~~se----------p 847 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANN--------EGLWNALGVL-SGIGNVACAQHCFIKSRFSE----------P 847 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhcc--------HHHHHHHHHh-hccchhhhhhhhhhhhhhcc----------c
Confidence 4 122346777777777654221 1233334433 33344444444444433321 1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------------------------HHHHhhCCCChhHHH
Q 010446 371 IMENMRIDLAELLHIVGRGQEGRELLEECLL----------------------------------ITEKYKGKEHPSFVT 416 (510)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~~~~~~~~~~~ 416 (510)
.....|.|+|.++....+++.|.+.+.++.. ...... ..+. ..
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g--ka~~-f~ 924 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG--KAKK-FQ 924 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc--ccch-hh
Confidence 1122334444444444444444444443332 211110 0111 11
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH--HHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010446 417 HLLNLAASYSRSKNFVEAERLLRICLD--IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (510)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 494 (510)
.+..-.......|++++-+...+++-. +.-+.+-..+|+...++...|....+++.+++|.+.+.+.+.+.+..+..+
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~s 1004 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDES 1004 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222233344455566555554443221 111222245788888999999999999999999999999999988877766
Q ss_pred Ccch
Q 010446 495 SLPG 498 (510)
Q Consensus 495 ~~~~ 498 (510)
..++
T Consensus 1005 qynv 1008 (1238)
T KOG1127|consen 1005 QYNV 1008 (1238)
T ss_pred hhhh
Confidence 6554
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=7.2e-09 Score=89.68 Aligned_cols=317 Identities=15% Similarity=0.108 Sum_probs=171.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHH----------h
Q 010446 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSG----------I 191 (510)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~ 191 (510)
.-.+.+++..|+|++|+..|+-+.+. +...+....+++.+++..|.|.+|.....++-+ +
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~----------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNK----------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcc----------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 34678899999999999999876542 444567788999999999999999887655322 1
Q ss_pred hhhcCCCchHHH----------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCH
Q 010446 192 VDSLKDDEPLLD----------AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261 (510)
Q Consensus 192 ~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 261 (510)
.-++++. ..+. .-...++.+.+..-.|++|++.|.+.+. +++.......++|.+|+++.-|
T Consensus 131 ahklndE-k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 131 AHKLNDE-KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHhCcH-HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchh
Confidence 1122221 1111 1124456666666777888887777764 4566666777889999999988
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc--CChHHHHH--H-------HHHHHHHHHHH----------
Q 010446 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--GKAVDAES--V-------FSRILKIYTKV---------- 320 (510)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~--~-------~~~al~~~~~~---------- 320 (510)
+-+.+.+.--+.- .|+...+.+..+...++. |+..+++. . |..+-.+++..
T Consensus 202 dvsqevl~vYL~q--------~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgA 273 (557)
T KOG3785|consen 202 DVSQEVLKVYLRQ--------FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGA 273 (557)
T ss_pred hhHHHHHHHHHHh--------CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccH
Confidence 8887776655442 333334444444333322 22211110 0 00000000000
Q ss_pred ---cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------------------HHHHHHhhccCC
Q 010446 321 ---YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK-------------------------------ALRVIKDSNYMS 366 (510)
Q Consensus 321 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------------------------------al~~~~~~~~~~ 366 (510)
.++--.....+..++...|.++++..+|..+.+. |-+.+.-.+..+
T Consensus 274 LqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 274 LQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred HHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 0000011234455555556666666666554433 222222110000
Q ss_pred CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 010446 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446 (510)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (510)
..- ...-....+|.++.-..++++-+.+++..-..+ ..+ -....++|..+...|++.+|.+.|-+.-.
T Consensus 354 ~ec-DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF----~Nd----D~Fn~N~AQAk~atgny~eaEelf~~is~--- 421 (557)
T KOG3785|consen 354 LEC-DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF----TND----DDFNLNLAQAKLATGNYVEAEELFIRISG--- 421 (557)
T ss_pred ccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCc----chhhhHHHHHHHHhcChHHHHHHHhhhcC---
Confidence 000 001112334555555556666665554433222 111 12345778888888888888887754422
Q ss_pred HHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (510)
Q Consensus 447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (510)
++-.+...-...||++|...|+++-|.+.+-
T Consensus 422 ----~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 422 ----PEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred ----hhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 2222222334567778887777777766654
No 96
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=3.1e-08 Score=92.64 Aligned_cols=311 Identities=15% Similarity=0.093 Sum_probs=202.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHH
Q 010446 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (510)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (510)
..|..+....+|++|+.+|+.|+.+ .+++..++..++....++|+++.....-.+.++.. |..
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~----------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ 142 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKI----------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQ 142 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhh
Confidence 3556667788999999999999988 88888999999999999999998877777766554 555
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (510)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (510)
...|...+..+...|++..|....+...+...............+......+....|.+++|.+.+..--.-
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-------- 214 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-------- 214 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------
Confidence 555888899999999999999988877766542222222234455556667777777777777665543221
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH----------------------
Q 010446 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC---------------------- 340 (510)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------------- 340 (510)
..+........|.++...+++++|...+...+... |+....+..+-.++.
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 11223344456777777777777777777655431 111111111100000
Q ss_pred -----------------------------HC-------------CCHHHHHHHHHHHHHHHHhhc----cCC-------C
Q 010446 341 -----------------------------AN-------------GNAEEAVELYKKALRVIKDSN----YMS-------L 367 (510)
Q Consensus 341 -----------------------------~~-------------g~~~~A~~~~~~al~~~~~~~----~~~-------~ 367 (510)
.. .+..+ ..++++.+..+.... ... .
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 00 01111 112222222222110 000 1
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (510)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (510)
.+.....++..++.-+-..|+++.|..+.+.|+. ..|.....+..-|.++...|+.++|...+.++.++
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--- 434 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--- 434 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---
Confidence 3344567778899999999999999999999886 46788888999999999999999999999998874
Q ss_pred HhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446 448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (510)
Q Consensus 448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (510)
+.++... -..-|.-..+.++.++|.+...+.
T Consensus 435 ----D~aDR~I-NsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 435 ----DTADRAI-NSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred ----cchhHHH-HHHHHHHHHHccccHHHHHHHHHh
Confidence 3333321 124566666777888887665543
No 97
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.34 E-value=7.6e-12 Score=88.34 Aligned_cols=78 Identities=29% Similarity=0.338 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
||.++.++.++|.+|..+|++++|+.+|++++++ .+..+++++.++.++.++|.++..+|++++|+++++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5788899999999999999999999999999999 66667788889999999999999999999999999999999864
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.34 E-value=2.3e-10 Score=113.39 Aligned_cols=167 Identities=11% Similarity=0.026 Sum_probs=144.4
Q ss_pred HHHHH-HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 121 LFNEV-KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 121 l~~~~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
+..++ ...-..|....+...+-+++...+. .+..+.++..||.+....|.+++|..+++.++++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~------- 116 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRR-------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF------- 116 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-------
Confidence 34444 3345666777777777777777665 67779999999999999999999999999999886
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
|+...+..+++.++.+.+++++|+..+++++.. .|..+..++.+|.++...|++++|+.+|++++..
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----- 183 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ----- 183 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence 677777899999999999999999999999875 4667889999999999999999999999999873
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
+|+...++.++|.++...|+.++|...|+++++..
T Consensus 184 ---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 56778899999999999999999999999999874
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.31 E-value=9.1e-09 Score=100.47 Aligned_cols=235 Identities=13% Similarity=0.088 Sum_probs=186.4
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (510)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (510)
.+.+...|+..+-+++.+ ++..+.++..+|.+|...-|...|...|+++.++. +..+.+.-..
T Consensus 470 ~rK~~~~al~ali~alrl----------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~ 532 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRL----------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAAS 532 (1238)
T ss_pred hhhhHHHHHHHHHHHHhc----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHH
Confidence 344577888888888887 88889999999999999889999999999998764 4445556778
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 289 (510)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (510)
+..|....+++.|......+-+.... ......+..+|..|...+++.+|+..++.+++. .|....+
T Consensus 533 adtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~ 598 (1238)
T KOG1127|consen 533 ADTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNL 598 (1238)
T ss_pred HHHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHH
Confidence 89999999999999885444332211 122334555899999999999999999999986 6777899
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (510)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (510)
+..+|.+|...|++..|++.|.++..+ .|......+..+.+....|+|.+|+..+...+...... .+-.
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e---~~~q 667 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE---RTGQ 667 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhh
Confidence 999999999999999999999999875 46666677788999999999999999999988776542 1223
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010446 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (510)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (510)
...+.++..++..+...|=..+|..+++++++.+.-.
T Consensus 668 ~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 668 NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3345666777777777888888889998888776543
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.28 E-value=1.1e-09 Score=108.69 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHhhCChHHHH-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446 161 EVAILDIIALGYVYIGDLKFVQ-SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (510)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (510)
.+..+..+-.+....|..++|- +.++++.++.+ ..|....+...+-+++.+.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~---- 81 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQVLE---------------------RHAAVHKPAAALPELLDYVRR---- 81 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHHHHH---------------------HhhhhcchHhhHHHHHHHHHh----
Confidence 3445555555666677766663 33444443332 222333333333344444332
Q ss_pred CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (510)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (510)
.+....++.++|.+....|.+++|+.+++.++++ .|+...+..+++.++.+.+++++|+..+++++..
T Consensus 82 -~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--- 149 (694)
T PRK15179 82 -YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--- 149 (694)
T ss_pred -ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---
Confidence 3555788999999999999999999999999987 6777889999999999999999999999999874
Q ss_pred HcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (510)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (510)
.|+....++.+|.++...|++++|+.+|++++.- +++. ..++.++|.++...|+.++|...|+++
T Consensus 150 -----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-------~p~~---~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 150 -----GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ-------HPEF---ENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred -----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-------CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677788889999999999999999999998873 2333 456788999999999999999999999
Q ss_pred HHHH
Q 010446 400 LLIT 403 (510)
Q Consensus 400 l~~~ 403 (510)
++..
T Consensus 215 ~~~~ 218 (694)
T PRK15179 215 LDAI 218 (694)
T ss_pred HHhh
Confidence 8865
No 101
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=4.4e-09 Score=90.93 Aligned_cols=311 Identities=17% Similarity=0.143 Sum_probs=189.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (510)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
..+....+|..|+.+++-.+.. +..+...+-..+|.|++..|+|++|...|.-+... ++.| +..
T Consensus 30 edfls~rDytGAislLefk~~~---------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-----~~~~--~el 93 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNL---------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-----DDAP--AEL 93 (557)
T ss_pred HHHHhcccchhHHHHHHHhhcc---------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-----CCCC--ccc
Confidence 3456778999999988876643 23333456677899999999999999999876642 1222 334
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHH----------HHHhcCCC---------ChhHHHHHHHHHHHHhhcCCHHHHHH
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINV----------LESRYGKT---------SILLVTSLLGMAKVLGSIGRAKKAVE 266 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~ 266 (510)
..+++.+++..|.|.+|.....++-+. ..+. +.. -.+...-...+|.+.+..-.|.+|++
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAId 172 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAID 172 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 688999999999999999887765321 1111 110 01122334456777777778888888
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH--CCC
Q 010446 267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA--NGN 344 (510)
Q Consensus 267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~ 344 (510)
.|.+.+. +++.....-..+|.||.++.-++-+.+.+.--+. . .|+...+.+..+...++ .|+
T Consensus 173 vYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~----q----~pdStiA~NLkacn~fRl~ngr 236 (557)
T KOG3785|consen 173 VYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR----Q----FPDSTIAKNLKACNLFRLINGR 236 (557)
T ss_pred HHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH----h----CCCcHHHHHHHHHHHhhhhccc
Confidence 8888775 4666677777899999999999888766654443 2 23222333333322222 122
Q ss_pred ----------------HHHHHHHHHH----------HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446 345 ----------------AEEAVELYKK----------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (510)
Q Consensus 345 ----------------~~~A~~~~~~----------al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (510)
++.+..+.+. |++.... --..+..+..+|+..|.++++..+|..+.+.
T Consensus 237 ~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~------L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 237 TAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS------LMKHIPEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred hhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH------HHhhChHhhhhheeeecccccHHHHHHHHhh
Confidence 2222222221 3333221 1222344557777778888888887766542
Q ss_pred H------------HH---HHHHhhCCC-----------------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 010446 399 C------------LL---ITEKYKGKE-----------------HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446 (510)
Q Consensus 399 a------------l~---~~~~~~~~~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (510)
. +- ..++....+ ..++......+|.+++-..++++.+.++...-..+.
T Consensus 311 l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 311 LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 10 001110011 112223344567777777888888888776554432
Q ss_pred HHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (510)
Q Consensus 447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (510)
.++ ....++|.++...|++.+|.+.|-+.
T Consensus 391 ----NdD----~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 391 ----NDD----DFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred ----Ccc----hhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 121 34588999999999999999988654
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.27 E-value=1.8e-10 Score=91.64 Aligned_cols=126 Identities=13% Similarity=0.050 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh
Q 010446 138 IDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE 217 (510)
Q Consensus 138 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (510)
..++++++++ .|.. +..+|.++...|++++|...|++++... |....++..+|.++...|
T Consensus 13 ~~~~~~al~~----------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 13 EDILKQLLSV----------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHc----------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHh
Confidence 4567777776 5554 5578999999999999999999988664 555677899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (510)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (510)
++++|+..|++++.+ .|....+++++|.++...|++++|+..|++++++ .|.....+.+.+.+.
T Consensus 73 ~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 73 EYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQ 136 (144)
T ss_pred hHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Confidence 999999999999985 3556788999999999999999999999999997 455566666666655
Q ss_pred HH
Q 010446 298 IK 299 (510)
Q Consensus 298 ~~ 299 (510)
..
T Consensus 137 ~~ 138 (144)
T PRK15359 137 IM 138 (144)
T ss_pred HH
Confidence 43
No 103
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.26 E-value=6e-11 Score=83.73 Aligned_cols=78 Identities=18% Similarity=0.397 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (510)
+|..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.++...|++++|++++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 4778889999999999999999999999999999 66667777888999999999999999999999999999998653
No 104
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=1.4e-07 Score=85.08 Aligned_cols=269 Identities=13% Similarity=0.064 Sum_probs=162.1
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE-- 276 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-- 276 (510)
+|.+.. +...+..-...|+..-|...|++|++.... +..........|..-..+..++.|...|+-|++...
T Consensus 204 HP~v~~-wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 204 HPKVSN-WIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred cccHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344433 667777778889999999999999887532 223333444455555566677777777766655321
Q ss_pred -------------HhcC---------------------CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 277 -------------LNRG---------------------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 277 -------------~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
+..| ..+|..-.++...-.+-...|+.+.-.+.|++|+.-.....
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~- 356 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS- 356 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh-
Confidence 1111 23455556677777777778999999999999987321100
Q ss_pred CCC--hHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 323 END--GRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (510)
Q Consensus 323 ~~~--~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (510)
... ...+..+.+.+. .-....+.+.+.+.|+.++++. +......+.++...|....++.+...|...+-.|
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI------PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI------PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc------CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 000 012222333222 1234788999999999999974 3445667777777888888888887777776655
Q ss_pred HHHH--------------------------HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCC
Q 010446 400 LLIT--------------------------EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 453 (510)
Q Consensus 400 l~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 453 (510)
+..+ ++.. ...|....++...|.+-..+|+.+.|...|+-|++-- ..+-
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl-e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp----~ldm 505 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL-EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP----ALDM 505 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH-hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc----cccc
Confidence 5432 1111 2345666666777777777777777777777666510 0111
Q ss_pred hhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 454 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 454 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
|... +......-...|.++.|..+|++.++..
T Consensus 506 pell--wkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 506 PELL--WKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHH--HHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 2211 2233334445677777777777766643
No 105
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=9.8e-08 Score=86.19 Aligned_cols=349 Identities=14% Similarity=0.087 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HhhCChHHHHHHHHHHHHhhhh
Q 010446 118 LLELFNEVKSMIMMG--NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY-VYIGDLKFVQSLLDMMSGIVDS 194 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~ 194 (510)
...++..+..+...| +..+++.+++..... .....-.+.+...+|.++ ....+++.|...++++..+.+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~-------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ 79 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQF-------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS 79 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 345777888888888 788888887776644 222334566677788765 4588999999999999888766
Q ss_pred cCCCchHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHH---------------------------------------
Q 010446 195 LKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLE--------------------------------------- 234 (510)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~--------------------------------------- 234 (510)
++.-......+...++.+|.... .+..+...+++++++.+
T Consensus 80 ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~ 159 (629)
T KOG2300|consen 80 IPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADH 159 (629)
T ss_pred cccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccch
Confidence 55443333444556666666555 55666666666655400
Q ss_pred --------------------------------------------------------------------------------
Q 010446 235 -------------------------------------------------------------------------------- 234 (510)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (510)
T Consensus 160 ~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ 239 (629)
T KOG2300|consen 160 ICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ 239 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence
Q ss_pred ---------------HhcCCCChhHH--------HHHHHHHH--HHhhcCCHHHHHHHHHHHHHHHHHhcCCCC--c---
Q 010446 235 ---------------SRYGKTSILLV--------TSLLGMAK--VLGSIGRAKKAVEIYHRVITILELNRGTES--A--- 284 (510)
Q Consensus 235 ---------------~~~~~~~~~~~--------~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~--- 284 (510)
++++.+.+... .++..+-. --...|-+++|.++-++++...++....+. +
T Consensus 240 ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srils 319 (629)
T KOG2300|consen 240 DSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILS 319 (629)
T ss_pred HHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 00011111110 01111111 112346678888888888877666543221 1
Q ss_pred -chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446 285 -DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN--DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (510)
Q Consensus 285 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (510)
.....+..+..+-.-.|++.+|++-...+.+.+.+..++. ....+.....+|.....-+.++.|+..|..|.+....
T Consensus 320 m~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~ 399 (629)
T KOG2300|consen 320 MFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES 399 (629)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH
Confidence 1123345567777889999999999999999887653211 1224556777888888899999999999999988543
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-------ChhHHHHHHHHHHHHHhccCHHHH
Q 010446 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-------HPSFVTHLLNLAASYSRSKNFVEA 434 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A 434 (510)
....+.+..++|.+|.+.|+-+.-.+.++. . ++. ....+.+++..|...+.++++.||
T Consensus 400 -------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~----i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEa 464 (629)
T KOG2300|consen 400 -------IDLQAFCNLNLAISYLRIGDAEDLYKALDL----I----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEA 464 (629)
T ss_pred -------HHHHHHHHHhHHHHHHHhccHHHHHHHHHh----c----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344566778999999998876543333322 1 222 112345666778888899999999
Q ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446 435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (510)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 490 (510)
...+.+.+++.... ....-++..+..|+.+....|+..++.+...-++.+.+++
T Consensus 465 K~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 465 KRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 99999999976321 2234455667789999999999999999999999998876
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.23 E-value=5.4e-09 Score=87.89 Aligned_cols=150 Identities=14% Similarity=0.189 Sum_probs=119.0
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 010446 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 247 (510)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 247 (510)
-+..|+..|+++......+... . +.. -+...++.++++..+++++.. +|.....
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~------~---~~~---------~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~ 75 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA------D---PLH---------QFASQQTPEAQLQALQDKIRA--------NPQNSEQ 75 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh------C---ccc---------cccCchhHHHHHHHHHHHHHH--------CCCCHHH
Confidence 3456788999888654432211 0 100 112367778888888888875 3566789
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHHHHHHcCCC
Q 010446 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYTKVYGEN 324 (510)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~ 324 (510)
+..+|.+|...|++++|+..|++++++ .|.....+..+|.++ ...|+ +++|...++++++.
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-------- 139 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-------- 139 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------
Confidence 999999999999999999999999998 566788999999975 67787 59999999999985
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
+|....++.++|..+...|++++|+.+++++++..
T Consensus 140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 46667889999999999999999999999999883
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.22 E-value=3.8e-10 Score=89.76 Aligned_cols=125 Identities=12% Similarity=0.145 Sum_probs=101.8
Q ss_pred HHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCH
Q 010446 182 QSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261 (510)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 261 (510)
..++++++++. |.. +..+|..+...|++++|..+|++++.. +|....++..+|.++...|++
T Consensus 13 ~~~~~~al~~~-------p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVD-------PET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcC-------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence 34566666553 433 557899999999999999999999875 356678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 010446 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 340 (510)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 340 (510)
++|+..|++++.+ .|....++.++|.++...|++++|+..|++++.+. |.....+.+.+.+..
T Consensus 75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH
Confidence 9999999999987 56778999999999999999999999999999862 333445555555443
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=4.2e-08 Score=94.02 Aligned_cols=288 Identities=16% Similarity=0.141 Sum_probs=150.2
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh---cCCCCh-
Q 010446 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR---YGKTSI- 242 (510)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~- 242 (510)
.+-..|...|.+++|.++.+. .+...+...|++.+..+...++.+.|+++|+++-....+. +..+.+
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~---------~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAET---------KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhh---------ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 344456667777777655543 2334455568899999999999999999999863221111 011111
Q ss_pred --------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc-----CC--------CCcchHHHHHHHHHHHHHcC
Q 010446 243 --------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR-----GT--------ESADLVLPLFSLGSLFIKEG 301 (510)
Q Consensus 243 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~--------~~~~~~~~~~~la~~~~~~g 301 (510)
.....|...|......|+.+.|+.+|..|-+.+.... |. +......+.+.||+.|...|
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH
Confidence 1123566778889999999999999988865432110 00 00011223344555555555
Q ss_pred ChHHHHHHHHHHHHHHHHH--cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 010446 302 KAVDAESVFSRILKIYTKV--YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379 (510)
Q Consensus 302 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 379 (510)
++.+|+.+|.+|-.....+ ..+++ .-.-+.+++.. ....+.-.|..||++.--.. ..-
T Consensus 982 ~v~~Av~FfTrAqafsnAIRlcKEnd--~~d~L~nlal~-s~~~d~v~aArYyEe~g~~~-----------------~~A 1041 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQAFSNAIRLCKEND--MKDRLANLALM-SGGSDLVSAARYYEELGGYA-----------------HKA 1041 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHhh-cCchhHHHHHHHHHHcchhh-----------------hHH
Confidence 5555555544432211000 00000 00011111110 01112222233333211000 112
Q ss_pred HHHHHHcCChHHHHHHHH-----HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH------HHHHHHHH
Q 010446 380 AELLHIVGRGQEGRELLE-----ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI------CLDIMTKT 448 (510)
Q Consensus 380 a~~~~~~g~~~~A~~~~~-----~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~ 448 (510)
..+|.+.|.+.+|+++.- .++++..+.+.+ ......+..-+..+....+|++|..++-. |+.++...
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~--~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA--GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC--CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 234555555555555432 133333333222 22335566778888889999999877644 44444321
Q ss_pred -----------hCC------CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 449 -----------VGP------DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 449 -----------~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
..+ +......++..+|.++.++|.|..|.+-|.+|=.
T Consensus 1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 011 1123456788999999999999999999988743
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.21 E-value=1.1e-08 Score=102.31 Aligned_cols=253 Identities=15% Similarity=0.067 Sum_probs=178.8
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
.+.-.|....++..+...+...+++++|...++.+++. +|.....++.+|.++...+++.++... .++.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 35566777888999999999999999999999988764 466677888999999999999888766 55554
Q ss_pred HHHhcC-----------CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC
Q 010446 275 LELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (510)
Q Consensus 275 ~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (510)
...... .+.+..-.++..+|.||..+|+.++|...|+++++. +|..+.+++++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-
Confidence 322110 012333468889999999999999999999999985 477788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010446 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (510)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (510)
+.++|+.++.+|+..+-.. .........|..+. ...-.+.+.=..+.++... .. .....+..+.-+=.
T Consensus 164 dL~KA~~m~~KAV~~~i~~----kq~~~~~e~W~k~~--~~~~~d~d~f~~i~~ki~~----~~--~~~~~~~~~~~l~~ 231 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKK----KQYVGIEEIWSKLV--HYNSDDFDFFLRIERKVLG----HR--EFTRLVGLLEDLYE 231 (906)
T ss_pred hHHHHHHHHHHHHHHHHhh----hcchHHHHHHHHHH--hcCcccchHHHHHHHHHHh----hh--ccchhHHHHHHHHH
Confidence 9999999999999875532 12222222222221 1122223322222222221 11 12234455666778
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
.|...++|++++..++.++++ .+....+...++.+|. +.|.. ...+++.+++..-
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l 286 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDI 286 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcc
Confidence 899999999999999999985 3444566788999887 56655 7778888777644
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=1.3e-09 Score=103.05 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (510)
.....++..+...|-..+|+..|++.- .+.....+|...|+..+|.....+-++ .
T Consensus 399 q~q~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le---------k 453 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE---------K 453 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc---------C
Confidence 335678888999998888888887642 345667889999999999888777654 1
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (510)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (510)
+.....|..+|.+..+. .+|++|.++.... .+.+...+|......++|+++.+.++.++++
T Consensus 454 ~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~----- 514 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDP-------SLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI----- 514 (777)
T ss_pred CCcchhHHHhhhhccCh-------HHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc-----
Confidence 23345555566555544 4555555553221 2334555666667789999999999999988
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
.+....+|+.+|.+..+.++++.|...|..++.. .|+...++++++..|...|+-.+|...++++++
T Consensus 515 -----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 515 -----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred -----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 3444668899999999999999999999998874 577889999999999999999999999999998
Q ss_pred HHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010446 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKL 500 (510)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 500 (510)
. +.....++.|...+....|.+++|++.|.+.+.+.+....+.++..-+
T Consensus 582 c--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv 630 (777)
T KOG1128|consen 582 C--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV 630 (777)
T ss_pred c--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 4 133345566777778899999999999999999988766555544333
No 111
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.20 E-value=1.2e-08 Score=103.35 Aligned_cols=206 Identities=19% Similarity=0.145 Sum_probs=186.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (510)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (510)
..|......|.+.+|.+ .-+++......++..++.++..+..++.++...|+.++|+..-.++.-+.+.. .+.+++.
T Consensus 937 e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~--~g~ds~~ 1013 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV--LGKDSPN 1013 (1236)
T ss_pred hhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh--ccCCCHH
Confidence 34555566677888888 78888888888888999999999999999999999999999999998777764 6778888
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Q 010446 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (510)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (510)
....+.+++......++...|...+.++..+..-..++.+|..+.+..+++.++...++++.|+.+.+.|+...+...++
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 88899999999999999999999999999998888888999999999999999999999999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010446 452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKL 500 (510)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 500 (510)
........+..+++.+...+++..|....+....++...+|++|.....
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~ 1142 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKE 1142 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchh
Confidence 8888999999999999999999999999999999999999999966543
No 112
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.18 E-value=3.9e-08 Score=83.46 Aligned_cols=183 Identities=17% Similarity=0.177 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (510)
...++..|...+..|++.+|+..|++.+.. .+.++....+...+|.+++..|++++|+..+++.+... +
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----P 73 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----P 73 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----C
Confidence 355889999999999999999999998876 55578888999999999999999999999999988876 5
Q ss_pred CchHHHHHHHHHHHHHHhhhc-----------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTLEN-----------YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 266 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 266 (510)
.++....+++.+|.+++.... ..+|...|+..+..+ ++++.. .+|..
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~-----------------~~A~~ 131 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYA-----------------EEAKK 131 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTH-----------------HHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHH-----------------HHHHH
Confidence 667788888999988766532 235555555555443 222322 22322
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHH
Q 010446 267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 346 (510)
Q Consensus 267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 346 (510)
....+.+. .+.--..+|..|.+.|.+..|+..++.+++.+ ++.+....++..++..|...|..+
T Consensus 132 ~l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 132 RLAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence 22222221 13334567888999999999999999888864 456667778888899999998887
Q ss_pred HHH
Q 010446 347 EAV 349 (510)
Q Consensus 347 ~A~ 349 (510)
.|.
T Consensus 196 ~a~ 198 (203)
T PF13525_consen 196 AAD 198 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.18 E-value=3.9e-09 Score=88.02 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=135.9
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (510)
.|+...+ ..++..+...|+-+.+..+..+..... +....++..+|......|++.+|+..++++...
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence 6666666 888999999999999988887754332 333334556899999999999999999999875
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
.|.....+..+|.+|.+.|++++|..-|.+++++. +......+|+|..|.-.|+++.|..++..+...
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~- 197 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS- 197 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 35567889999999999999999999999999983 445678899999999999999999999988762
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010446 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (510)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (510)
.+....+..|++.+....|++++|.....+
T Consensus 198 -------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 -------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 233446778999999999999999887654
No 114
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.1e-07 Score=78.09 Aligned_cols=227 Identities=15% Similarity=0.097 Sum_probs=167.2
Q ss_pred CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (510)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (510)
++....+..|..-+.+|....+|++|...+.+|.+..+... .....+.++-..+.+...+..+.++..++++|..++.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444556667778888899999999999999998877643 3344567788889999999999999999999999998
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (510)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (510)
+. ..|+.+..-...+--.....++++|+.+|++++.+.++. .........+...++++.+..++++|-..+.+
T Consensus 103 E~---GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 103 EC---GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred Hh---CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 87 345544444444555667789999999999999998762 33334445667889999999999999988888
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 010446 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478 (510)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (510)
-..+..+.. ..+.....+.....+|.-..+|..|..+++...++- +-..++...++.+|-..| ..|+.++..+
T Consensus 176 e~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip----~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 176 EGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP----AFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred hhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc----cccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 776666552 233444455566667777889999999999876642 223455566667776554 6788887766
Q ss_pred HHH
Q 010446 479 LVL 481 (510)
Q Consensus 479 ~~~ 481 (510)
.+.
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 543
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.15 E-value=1.2e-08 Score=102.18 Aligned_cols=249 Identities=13% Similarity=0.060 Sum_probs=171.9
Q ss_pred CCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446 155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (510)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (510)
+.-+|....++..+...+...|++++|+...+.++... |.....++.+|.++...++++++... .++....
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 45588889999999999999999999999999777654 55566688999999999998888766 5555432
Q ss_pred HhcC-----------CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 010446 235 SRYG-----------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA 303 (510)
Q Consensus 235 ~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 303 (510)
.... .+.+..-.+++.+|.||-.+|+.++|...|++++++ .|..+.+++++|..|... +.
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence 2100 012233368899999999999999999999999998 477889999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 010446 304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383 (510)
Q Consensus 304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~ 383 (510)
++|+.++.+|+..+-..- ........|.. .+.....+++.=..+.++.+.. .........+.-+=..|
T Consensus 166 ~KA~~m~~KAV~~~i~~k--q~~~~~e~W~k--~~~~~~~d~d~f~~i~~ki~~~--------~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 166 EKAITYLKKAIYRFIKKK--QYVGIEEIWSK--LVHYNSDDFDFFLRIERKVLGH--------REFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHHHHHHHhhh--cchHHHHHHHH--HHhcCcccchHHHHHHHHHHhh--------hccchhHHHHHHHHHHH
Confidence 999999999998743220 11111122211 1222223333333333332222 11233344556677888
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 384 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
...++|++++.+++.+++.. +....+...++.+|. +.|.. ...+++.+.+
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~--------~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHD--------NKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcC--------CcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 89999999999999998853 334456777888877 44433 4455555443
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2.7e-08 Score=84.22 Aligned_cols=228 Identities=17% Similarity=0.136 Sum_probs=163.5
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHH
Q 010446 127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL 206 (510)
Q Consensus 127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (510)
.+++..+|..|++++..-.+. .|.....+..+|.||+...+|..|...|++.-... |......
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er----------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-------P~~~qYr 81 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELER----------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-------PELEQYR 81 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------hHHHHHH
Confidence 346677888888887766554 67677789999999999999999999999876554 7776666
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 010446 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286 (510)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (510)
...+..++..+.+..|+.......+ +......++..-+.+.+..+++..+..+.++. . ....
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p---~en~ 143 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------P---SENE 143 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------c---CCCc
Confidence 6778888899999999877655432 22234455666677778888888777665543 1 2345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc---
Q 010446 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--- 363 (510)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--- 363 (510)
+...++.|.+.++.|++++|++-|+.+++. +.-.|. .-++++.+++..|+++.|+++..+.++..-+..
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhh-----cCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 778889999999999999999999999985 223333 346789999999999999999988876543310
Q ss_pred -----cCCCCC-----------hHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446 364 -----YMSLDD-----------SIMENMRIDLAELLHIVGRGQEGRELLE 397 (510)
Q Consensus 364 -----~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (510)
..+++. ..+..+++-.+.++.+.|+++.|.+.+.
T Consensus 216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 001111 1122344555677788888888776653
No 117
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.13 E-value=3.5e-07 Score=85.65 Aligned_cols=336 Identities=15% Similarity=0.124 Sum_probs=194.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHH---HHHHHHHHhhhhcCCCch
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ---SLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~ 200 (510)
-+..+...++.++|.+-+...+..-+-. +...+.....+..+.....+.-+.-..+ .+++..+. .-..
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~---sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~------rftD 245 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFV---SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR------RFTD 245 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhh---hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc------cCcH
Confidence 3445566677777766666655321111 1122333344455554444332222211 12222222 2234
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh---------------------c------CCCChhHHH-------
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR---------------------Y------GKTSILLVT------- 246 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------~------~~~~~~~~~------- 246 (510)
.....+..||..|.+.|.+++|...|++++...... . +.+......
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 566778999999999999999999999987641100 0 000000000
Q ss_pred --HH---------------------HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 010446 247 --SL---------------------LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA 303 (510)
Q Consensus 247 --~~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 303 (510)
.+ ..+-.+-...|+..+-+..|.+|+........ .......+..+|..|...|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcH
Confidence 00 01122334456777777788887765422211 223346778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--ccCCCCChHH------HHH
Q 010446 304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS--NYMSLDDSIM------ENM 375 (510)
Q Consensus 304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~------~~~ 375 (510)
+.|...|+++.+.- -+.-.+.+.+|.+-|..-....+++.|..+.++|...-... .......+.. ..+
T Consensus 404 ~~aRvifeka~~V~----y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 404 DDARVIFEKATKVP----YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred HHHHHHHHHhhcCC----ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 99999999998751 11223468889999999999999999999999987542220 0111222222 234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (510)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (510)
|..++......|-++.-...|++.+++.- .+..+..+.|..+....-+++|.+.|++.+.+++- |.-.+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLri--------aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~---p~v~d 548 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRI--------ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW---PNVYD 548 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC---ccHHH
Confidence 55566666677777777777777776542 22344456677777777778888888777775421 11122
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
+...|......-+..-..+.|..+|++|++
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 222333333333334456777777777776
No 118
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.12 E-value=4e-09 Score=86.98 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
...+..++.+|.++...|++++|+..|++++.+. ++++....++.++|.++...|++++|+.++++++.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~----- 101 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER----- 101 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 4456678999999999999999999999999873 233455678999999999999999999999999987
Q ss_pred CCCCcchHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446 280 GTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (510)
.|.....+.++|.++. ..|++++|+..+.+++..+++..+.+++..
T Consensus 102 ---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 102 ---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred ---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 3334455566666666 899999999999999999888877666443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.12 E-value=4.5e-09 Score=88.41 Aligned_cols=119 Identities=10% Similarity=0.103 Sum_probs=103.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q 010446 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210 (510)
Q Consensus 131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 210 (510)
.++.++++..+++++.. .|+.+..|..+|.+|...|++++|+..|++++.+. |....++..+|
T Consensus 52 ~~~~~~~i~~l~~~L~~----------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~~~~~~~lA 114 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA----------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------GENAELYAALA 114 (198)
T ss_pred chhHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence 56778888888888887 88889999999999999999999999999999875 34455578899
Q ss_pred HHH-Hhhhc--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 211 SMY-STLEN--YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 211 ~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
.++ ...|+ +++|...++++++. +|....++..+|..+...|++++|+.+++++++.
T Consensus 115 ~aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 115 TVLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 874 67777 59999999999986 3555778999999999999999999999999987
No 120
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.11 E-value=1.3e-07 Score=82.19 Aligned_cols=186 Identities=17% Similarity=0.147 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
.++..+......|++++|+..|++.+.. .+..+....+...+|.+++..+++++|+..+++.++.. +++
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-------yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----P~~ 102 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNR-------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----PTH 102 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----cCC
Confidence 3677888999999999999999999876 45567777788999999999999999999999998885 677
Q ss_pred hHHHHHHHHHHHHHHhhh---------------c---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCH
Q 010446 200 PLLDAILLHMGSMYSTLE---------------N---YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 261 (510)
|....+++.+|.++...+ + ..+|+..+++.++.+ |+++..
T Consensus 103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya----------------- 160 (243)
T PRK10866 103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT----------------- 160 (243)
T ss_pred CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH-----------------
Confidence 888888999998764443 1 234555565555543 222221
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 010446 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (510)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (510)
.+|...+....+. .+.--..+|..|.+.|.|..|+.-++.+++.+ ++.+....++..++..|..
T Consensus 161 ~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 161 TDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQ 224 (243)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHH
Confidence 2222222222111 13333467888999999999999999888864 4567788888899999999
Q ss_pred CCCHHHHHHHHHH
Q 010446 342 NGNAEEAVELYKK 354 (510)
Q Consensus 342 ~g~~~~A~~~~~~ 354 (510)
.|..++|......
T Consensus 225 lg~~~~a~~~~~~ 237 (243)
T PRK10866 225 LQLNAQADKVAKI 237 (243)
T ss_pred cCChHHHHHHHHH
Confidence 9999988876543
No 121
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=7e-06 Score=74.62 Aligned_cols=339 Identities=16% Similarity=0.095 Sum_probs=216.6
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHH----HHHHHHHH-HHhhCChHHHHHHHHHHHHhhhhc--------
Q 010446 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVA----ILDIIALG-YVYIGDLKFVQSLLDMMSGIVDSL-------- 195 (510)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~-------- 195 (510)
...-+..+.....+.+-+++... ..++..-+ .+..+-.+ |...|+...+...+++........
T Consensus 178 ~me~d~~dV~~ll~~~~qi~~n~----~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~ 253 (629)
T KOG2300|consen 178 IMERDDYDVEKLLQRCGQIWQNI----SSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHD 253 (629)
T ss_pred HhCccHHHHHHHHHHHHHHHhcc----CCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCcc
Confidence 33345555555555554444432 22332222 23333333 455788887777776654433321
Q ss_pred ----CCCchHHHHH--------HHHHH--HHHHhhhcHHHHHHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHH
Q 010446 196 ----KDDEPLLDAI--------LLHMG--SMYSTLENYEKSMLVYQRVINVLESRYGKT--SI----LLVTSLLGMAKVL 255 (510)
Q Consensus 196 ----~~~~~~~~~~--------~~~l~--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la~~~ 255 (510)
+...+..... +..+- .--...|-+++|.++-++++...++....+ .+ .....+-.+..+-
T Consensus 254 e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~ 333 (629)
T KOG2300|consen 254 EKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCR 333 (629)
T ss_pred ccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 2222222211 11111 112346889999999999988766653333 11 1234456777888
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 010446 256 GSIGRAKKAVEIYHRVITILELNRGTE--SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC 333 (510)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 333 (510)
.-.|++.+|++-...+.+.+.+..++. ....+.....+|......+.++.|+..|..|.+...+. .-.+.+..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nl 408 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNL 408 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHH
Confidence 889999999999999998887654321 12234556678888888899999999999999875432 22556677
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh
Q 010446 334 SLAHAKCANGNAEEAVELYKKALRVIKDSN-YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412 (510)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 412 (510)
++|.+|...|+-+.-.+ +++.....+ .........+.+++..|-..+.++++.||...+.+.+++.... +...
T Consensus 409 nlAi~YL~~~~~ed~y~----~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~r 482 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYK----ALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNR 482 (629)
T ss_pred hHHHHHHHhccHHHHHH----HHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHH
Confidence 89999999887654333 333321100 0000112334566677888889999999999999999887332 2234
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC--hHHHHHHHHHHH
Q 010446 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR--DKEAEKLVLEAL 484 (510)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al 484 (510)
.++-.+..|+.+....|+..++.+..+-++++.++. ++.+........+-.+|...|+ .+...+.+.+-.
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~q 554 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKHQ 554 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 455677789999999999999999999999998886 6677777666777788888888 666666666533
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.09 E-value=6.8e-08 Score=82.00 Aligned_cols=184 Identities=17% Similarity=0.163 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (510)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (510)
.+..++..|..++..|+|.+|+..|+.+.... +.++....+.+.+|.+++..|++++|+..+++.++.. ++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~ 74 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN 74 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 45678899999999999999999999998775 5557777889999999999999999999999998875 56
Q ss_pred ChhHHHHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHH
Q 010446 241 SILLVTSLLGMAKVLGSIG-----------RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV 309 (510)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 309 (510)
++....+++.+|.++.... ...+|+..++..++.+ =...-..+|...
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----------------------P~S~y~~~A~~~ 132 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----------------------PNSEYAEEAKKR 132 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------------TTSTTHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC----------------------cCchHHHHHHHH
Confidence 6777888888888876542 1224444444444432 111222333333
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCCh
Q 010446 310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG 389 (510)
Q Consensus 310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 389 (510)
+..+.+. .+.--..+|..|.+.|.+..|+..++.+++.+ |+.+....++..++..|...|..
T Consensus 133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-------p~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-------PDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-------TTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCCchHHHHHHHHHHHHHHhCCh
Confidence 3322221 22334568999999999999999999999884 56677778889999999999998
Q ss_pred HHHH
Q 010446 390 QEGR 393 (510)
Q Consensus 390 ~~A~ 393 (510)
+.|.
T Consensus 195 ~~a~ 198 (203)
T PF13525_consen 195 QAAD 198 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8544
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.08 E-value=5.4e-09 Score=87.21 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=133.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH
Q 010446 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (510)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (510)
.+....+...|+-+.+..+..++... .+.....+..+|......|++..|+..++++.... |.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~ 132 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA----------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PT 132 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc----------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CC
Confidence 66778888999988888887776544 66667777779999999999999999999998764 44
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (510)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (510)
....++.+|.+|.+.|++++|..-|.+++++.. .......|+|..|.-.|+++.|..++..+...
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~------- 197 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAP--------NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS------- 197 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-------
Confidence 556689999999999999999999999999852 22456889999999999999999999988764
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (510)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (510)
.+....+..+++.+....|++++|.+...+-
T Consensus 198 -~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 198 -PAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred -CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 3445678889999999999999998876543
No 124
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=1.2e-08 Score=84.25 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 405 (510)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 405 (510)
......+..+|.++...|++++|+..|++++.+. +++.....++.++|.++...|++++|+.++++++.+.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-- 102 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-------IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-- 102 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3456788999999999999999999999999872 3344455688999999999999999999999999763
Q ss_pred hhCCCChhHHHHHHHHHHHHH-------hccCHHHHHHHHHHHHHHHHHHhCCCChhhH
Q 010446 406 YKGKEHPSFVTHLLNLAASYS-------RSKNFVEAERLLRICLDIMTKTVGPDDQSIS 457 (510)
Q Consensus 406 ~~~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 457 (510)
|.....+.++|.++. ..|++++|...+.+++..+++..+.+++...
T Consensus 103 ------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 103 ------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred ------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 223344445555555 9999999999999999999988777764443
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=7e-07 Score=85.97 Aligned_cols=266 Identities=14% Similarity=0.096 Sum_probs=156.5
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHH----HhhhhcCCCchHH---------HHHHHHHHHHHHhhhcHHHHHH
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMS----GIVDSLKDDEPLL---------DAILLHMGSMYSTLENYEKSML 224 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~ 224 (510)
......+|++.+..+...+|.+.|+++|+++- ++.+-+.++.+.+ ...|...|......|+.+.|+.
T Consensus 854 RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 854 RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence 44455688999999999999999999998743 2332222332221 1346677888899999999999
Q ss_pred HHHHHHHHHHHh-----cCCCC--------hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 010446 225 VYQRVINVLESR-----YGKTS--------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 291 (510)
Q Consensus 225 ~~~~al~~~~~~-----~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 291 (510)
+|..|-+.+... .|.-+ .....+.+.+|..|...|++.+|+.+|.+|......+.--...+.-.-+.
T Consensus 934 ~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 934 FYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred HHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999987764322 01100 11233567899999999999999999988755432221000111122222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHHHHhhccCC
Q 010446 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK-----ALRVIKDSNYMS 366 (510)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-----al~~~~~~~~~~ 366 (510)
+++.. ....+.-.|..||++.--. ...-..+|.+.|.+.+|+++.-+ ++++..+....+
T Consensus 1014 nlal~-s~~~d~v~aArYyEe~g~~---------------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1014 NLALM-SGGSDLVSAARYYEELGGY---------------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred HHHhh-cCchhHHHHHHHHHHcchh---------------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 33221 1122333444455432110 01112346666777777665322 344444321222
Q ss_pred CCChHHHHHHHHHHHHHHHcCChHHHHHHHH------HHHHHHHHh-----------hC------CCChhHHHHHHHHHH
Q 010446 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLE------ECLLITEKY-----------KG------KEHPSFVTHLLNLAA 423 (510)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~-----------~~------~~~~~~~~~~~~la~ 423 (510)
.|+ ..+..-+..+....+|++|..++- .|+.+.... .. ++......++..+|.
T Consensus 1078 sDp----~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1078 SDP----KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred CCH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 333 234667888888889999887754 444443211 00 112234567888999
Q ss_pred HHHhccCHHHHHHHHHHHHH
Q 010446 424 SYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~ 443 (510)
++.++|.|..|-+-|.+|-+
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred HHHhccchHHHHHHHhhhhh
Confidence 99999999999888877643
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=5e-08 Score=92.59 Aligned_cols=218 Identities=15% Similarity=0.153 Sum_probs=164.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
.+..+...|-...|+..+++ ...+.....||...|+..+|..+..+-++. +...
T Consensus 404 laell~slGitksAl~I~Er------------------lemw~~vi~CY~~lg~~~kaeei~~q~lek--------~~d~ 457 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFER------------------LEMWDPVILCYLLLGQHGKAEEINRQELEK--------DPDP 457 (777)
T ss_pred HHHHHHHcchHHHHHHHHHh------------------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--------CCcc
Confidence 44556666767777666665 335566677888889888888887765541 1122
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (510)
..|..+|.+ -.=-.+|+++.++.+. ..+.+...+|......++|.++.++++.++++ .
T Consensus 458 ~lyc~LGDv-------~~d~s~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------n 515 (777)
T KOG1128|consen 458 RLYCLLGDV-------LHDPSLYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEI--------N 515 (777)
T ss_pred hhHHHhhhh-------ccChHHHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhc--------C
Confidence 224444444 4444566666665433 22445566777777899999999999999998 6
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (510)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (510)
|....+|+.+|.+..+.+++..|.+.|..++.. .|+...+++|++..|...|+-.+|...+.++++..
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---- 583 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---- 583 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC----
Confidence 778899999999999999999999999999874 57778999999999999999999999999999873
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010446 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (510)
.++ ..++.|.-.+....|.+++|++.+.+.+.+.+...
T Consensus 584 ---~~~---w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 584 ---YQH---WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred ---CCC---CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 223 23557777888899999999999999988876553
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.05 E-value=8.4e-09 Score=80.25 Aligned_cols=102 Identities=9% Similarity=0.092 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
++....++.+|..++..|++++|...|+-...+ +|.....+++||.++..+|++++|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 556666899999999999999999999988775 4677889999999999999999999999999987
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
.|+....+.++|.++...|+.+.|.+.|+.++..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 46678899999999999999999999999999987
No 128
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=2.2e-06 Score=77.59 Aligned_cols=270 Identities=13% Similarity=0.123 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH-------
Q 010446 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL------- 233 (510)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 233 (510)
....+...+..-...|+..-|...|+.+.... ++ +......+...|..-..+..++.|...|.-|++..
T Consensus 206 ~v~~wikyarFE~k~g~~~~aR~VyerAie~~---~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee 281 (677)
T KOG1915|consen 206 KVSNWIKYARFEEKHGNVALARSVYERAIEFL---GD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE 281 (677)
T ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 34556667777778888889999998888765 32 23334445566666677778888877777666542
Q ss_pred --------HHhcCC---------------------CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC-C
Q 010446 234 --------ESRYGK---------------------TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE-S 283 (510)
Q Consensus 234 --------~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~ 283 (510)
++.+|. ++|..-++++..-.+-...|+.+.-.+.|++|+.-........ .
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W 361 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW 361 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH
Confidence 111111 2344455666777777778999999999999986421100000 0
Q ss_pred cchHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446 284 ADLVLPLFSLGS-LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (510)
Q Consensus 284 ~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (510)
...+..+.+.+. .-....+.+.+.+.|+.++++.. ..+-..+..+...|....++.+...|...+-.|+..+.+.
T Consensus 362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~ 437 (677)
T KOG1915|consen 362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence 011122222221 12356788999999999988631 1222344445545554445555544444444433221110
Q ss_pred cc-----------------------CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 010446 363 NY-----------------------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 419 (510)
Q Consensus 363 ~~-----------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 419 (510)
+. .-.-.|....++...|.+-..+|+.+.|...|+-|+.-- . -+.|. ..+.
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp--~--ldmpe--llwk 511 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP--A--LDMPE--LLWK 511 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--c--cccHH--HHHH
Confidence 00 001123335677888898899999999999998776521 0 12222 2344
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 420 NLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
.....-...|.+++|..+|++.++.
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHh
Confidence 5556667889999999999999884
No 129
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=1.6e-06 Score=76.96 Aligned_cols=271 Identities=15% Similarity=0.089 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
.++..+...-..|+++.|-.+..++-+.. ...........+......||++.|..-..++....
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~---------~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~------- 183 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELA---------GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT------- 183 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccC---------CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-------
Confidence 35666788899999999999999886541 23344566778889999999999999998887664
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHH
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV--LGSIGRAKKAVEIYHRVITILEL 277 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~ 277 (510)
|....++.....+|...|++.+...+..+..+.. --+++.. .-+.+.+.. +...++-..+..+...--+.-.+
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~----~l~~~e~-~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~ 258 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG----LLSDEEA-ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK 258 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc----CCChHHH-HHHHHHHHHHHHHHHhccccchHHHHHHHhccHH
Confidence 3334446777889999999999988887664421 0112222 222222221 22222222222211111111111
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (510)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (510)
.. .+ ......++.-+...|+.++|.+...++++.. .++... ..++ ...-++...=++..++.++
T Consensus 259 lr--~~---p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~L~---~~~~--~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 259 LR--ND---PELVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPRLC---RLIP--RLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred hh--cC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChhHH---HHHh--hcCCCCchHHHHHHHHHHH
Confidence 10 12 3344556778899999999999999998742 233311 1111 2345677776676776666
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010446 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (510)
. .++.+ ..+..||.++.+.+.|.+|..+++.+++.. .....+..+|.++.++|+..+|.+.
T Consensus 323 ~-------h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 323 Q-------HPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLR---------PSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred h-------CCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHH
Confidence 5 34444 456789999999999999999999888753 2345678899999999999999999
Q ss_pred HHHHHHHHH
Q 010446 438 LRICLDIMT 446 (510)
Q Consensus 438 ~~~al~~~~ 446 (510)
+++++....
T Consensus 384 r~e~L~~~~ 392 (400)
T COG3071 384 RREALLLTR 392 (400)
T ss_pred HHHHHHHhc
Confidence 999996543
No 130
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.05 E-value=3.3e-05 Score=77.55 Aligned_cols=334 Identities=11% Similarity=0.044 Sum_probs=218.3
Q ss_pred CCCChhHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 155 GNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
...+...+.+...+|.++. ...+++.|+.+++++..+.+. ..-......+...++.++.+.+... |....++.++..
T Consensus 52 ~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 52 KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 3344566778899999987 689999999999999888765 3333334555667788988888777 999999999987
Q ss_pred HHhcCCCChhHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446 234 ESRYGKTSILLVTSLLGM-AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312 (510)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 312 (510)
+.. .+.....+...+ ...+...+++..|.+.++.......... +....+.+....+.+....+..+++++..++
T Consensus 130 ~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 130 ETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQR 204 (608)
T ss_pred hcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 652 122222333333 3333344899999999999998875432 2233334445556777788889999999999
Q ss_pred HHHHHHHH--cCCCChHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHhhccCC------CC--------------
Q 010446 313 ILKIYTKV--YGENDGRVGMAMCSLAH--AKCANGNAEEAVELYKKALRVIKDSNYMS------LD-------------- 368 (510)
Q Consensus 313 al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~-------------- 368 (510)
+....... .+..++....++..+-. ++...|+++.+...+++.-....+..... ++
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~ 284 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS 284 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence 97776654 11123334445544444 44567888888877776655555432111 00
Q ss_pred ------------ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCChh---------------HHHHH
Q 010446 369 ------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPS---------------FVTHL 418 (510)
Q Consensus 369 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~---------------~~~~~ 418 (510)
....+-++.--|......|..++|.+++++++...++... ...+. ...+.
T Consensus 285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~ 364 (608)
T PF10345_consen 285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL 364 (608)
T ss_pred CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence 0111223333455566677778999999999999887651 11100 12234
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGP-DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (510)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 495 (510)
..++.+..-.|++.+|....+.+.....+...+ ........++..|..+...|+.+.|..+|.+..-......++..
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~ 442 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKS 442 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCC
Confidence 456777888999999999999888866543221 12234556678888899999999999999966544444444333
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.04 E-value=1.9e-07 Score=81.22 Aligned_cols=175 Identities=11% Similarity=0.055 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010446 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (510)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (510)
....++..|..+...|++++|+..|++.+... +..+....+...+|.++.+.+++++|+..+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~------- 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL------- 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Confidence 35557778899999999999999999998853 456677778899999999999999999999999988
Q ss_pred CCCChHHHHHHHHHHHHHHHcC---------------C---hHHHHHHHHHHHHHHHHhhCCCChh--------------
Q 010446 366 SLDDSIMENMRIDLAELLHIVG---------------R---GQEGRELLEECLLITEKYKGKEHPS-------------- 413 (510)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~-------------- 413 (510)
.|+++....+++.+|.++...+ + ..+|+..+++.+..+. +.+.
T Consensus 99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP-----~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP-----NSQYTTDATKRLVFLKDR 173 (243)
T ss_pred CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc-----CChhHHHHHHHHHHHHHH
Confidence 5677777888888998764443 1 2356666666655432 1111
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010446 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (510)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (510)
.+.--..+|..|.+.|.|..|+.-++.+++-+ |+.+...+++..+..+|...|..++|.+....
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 12223356888999999999999999998854 56778889999999999999999999886544
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.01 E-value=7.2e-08 Score=77.18 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (510)
....+..+......++...+...+++.+.. .++.+....+...+|.+++..|++++|...|+.++... +
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~ 79 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKD-------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----P 79 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----C
Confidence 334566666666899999988877776654 45566667888999999999999999999999988743 3
Q ss_pred CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (510)
+......+...++.++...|++++|+..++.. .+.+........+|.+|...|++++|+..|++|+
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 33445566788999999999999999998652 2334556678889999999999999999999874
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.01 E-value=1.6e-08 Score=80.24 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (510)
+|........+|..+...|++++|...++++.... |....++..+|.++...|++++|..++++++..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 77778889999999999999999999999987653 334556889999999999999999999998875
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
.|.....+..+|.++...|++++|+..++++++.
T Consensus 81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2445677889999999999999999999999987
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.01 E-value=7.6e-08 Score=77.04 Aligned_cols=123 Identities=22% Similarity=0.215 Sum_probs=99.5
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 010446 299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378 (510)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 378 (510)
..++...+...+++.+.- .++.+....+...+|.++...|++++|...|++++.. .+++.....+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR 90 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence 578888887777766653 2445566778888999999999999999999999886 3555666667789
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010446 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (510)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (510)
+|.++...|++++|+..++.. +..+........+|.+|...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999998652 1334455678889999999999999999999874
No 135
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.01 E-value=1.3e-06 Score=82.06 Aligned_cols=243 Identities=14% Similarity=0.138 Sum_probs=168.9
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (510)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (510)
+..|+..+-+..|.+|+..+.. ..........+..+|..|...|+.+.|..+|+++.+.. -..-.+++.+|..
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP----~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDP----KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---YKTVEDLAEVWCA 430 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCc----ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---ccchHHHHHHHHH
Confidence 4467788888888888775432 12233345678899999999999999999999988764 2233567888999
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHH----hcCCCChh------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 209 MGSMYSTLENYEKSMLVYQRVINVLES----RYGKTSIL------LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
.|..-.+..+++.|+.+.++|...-.. .+....|. ....+..++......|-++.....|++.+++.
T Consensus 431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr--- 507 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR--- 507 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---
Confidence 999999999999999999988754221 12223332 23456667777778888888888999988873
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH---HHHHHHHHHCCCHHHHHHHHHHH
Q 010446 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM---CSLAHAKCANGNAEEAVELYKKA 355 (510)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~a 355 (510)
..+.....|.|..+....-+++|.+.|++.+.++ ..|.....| ......-...-+.+.|..+|++|
T Consensus 508 -----iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 508 -----IATPQIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred -----cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2234566778888888888899999999888875 234433333 33333333445788999999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (510)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (510)
++.+. +...-.++...|.+-.+-|-...|+..|++|-
T Consensus 577 L~~Cp--------p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 577 LDGCP--------PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HhcCC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98531 22223344556666666777777887777754
No 136
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.5e-07 Score=79.81 Aligned_cols=225 Identities=16% Similarity=0.083 Sum_probs=161.7
Q ss_pred HhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 010446 173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (510)
Q Consensus 173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (510)
.+..+|++|++++..-.+. .|.....+..+|.||+...+|..|..+|++.-.. .|.........+
T Consensus 21 I~d~ry~DaI~~l~s~~Er-------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~A 85 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER-------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQA 85 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHH
Confidence 4566788888877654433 3544455889999999999999999999987654 466677777889
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 010446 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (510)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (510)
..++..+.+.+|+.......+ +......+.-.-+.+.+..+++..+..+.++.- ....+...
T Consensus 86 QSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~ 147 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQ 147 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchh
Confidence 999999999999887765532 112223344445666777788877766555421 12355678
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----
Q 010446 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---- 408 (510)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 408 (510)
.+.|-+.++.|++++|.+-|+.+++. +.-.+.++ ++++.++.+.|+++.|+++..+.++...+...
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 89999999999999999999999987 34444443 78999999999999999998887765433211
Q ss_pred ------CC-----C------hhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446 409 ------KE-----H------PSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (510)
Q Consensus 409 ------~~-----~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (510)
.+ + .....+++..+.++.+.|+++.|.+.+..
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 00 0 11234566678889999999998876643
No 137
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1e-08 Score=87.26 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (510)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (510)
....+.+-..|..+.+.++|.+|+..|.+||++ .|..+..|.+.+.+|.++|.++.|++-.+.++.+.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-- 145 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-- 145 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--
Confidence 345566888999999999999999999999999 99999999999999999999999999999999875
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
|....+|..||.+|..+|++.+|++.|++++++
T Consensus 146 -----p~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 146 -----PHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred -----hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 888899999999999999999999999999987
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.00 E-value=2.7e-08 Score=78.89 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=90.5
Q ss_pred ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (510)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (510)
+|........+|..+...|++++|...+++++.. .|.....+..+|.++...|++++|..++++++..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3455677889999999999999999999999886 4556788999999999999999999999999874
Q ss_pred cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
+|.....+..+|.++...|++++|+..++++++..
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35556778899999999999999999999999873
No 139
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.99 E-value=3.1e-08 Score=77.14 Aligned_cols=102 Identities=10% Similarity=-0.042 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (510)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (510)
...++.++..+..++..|++++|...|+-.... +|..+..++.||.++...|++++|+..|.++..+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-- 99 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-- 99 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 346677899999999999999999999999888 99999999999999999999999999999998875
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
+++ ...+.++|.++...|+.+.|.+.|+.++...
T Consensus 100 --~dd---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 100 --IDA---PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred --CCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 333 4458999999999999999999999999987
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.9e-08 Score=85.67 Aligned_cols=122 Identities=25% Similarity=0.233 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
..+..+..-|.-....++|.+|+..|.+|+++ .|..+..|.+.|.+|.++|.++.|++-++.++.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 45666778899999999999999999999998 6777899999999999999999999999999985
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH
Q 010446 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 390 (510)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 390 (510)
+|....+|..||.+|..+|++++|++.|++++++ .|+... ...+|..+-.+.++..
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-------dP~Ne~---~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-------DPDNES---YKSNLKIAEQKLNEPK 200 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-------CCCcHH---HHHHHHHHHHHhcCCC
Confidence 6888999999999999999999999999999998 455553 3345555544444443
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.7e-06 Score=71.97 Aligned_cols=192 Identities=19% Similarity=0.090 Sum_probs=140.3
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (510)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (510)
+.++-+++....+...... .-.++....+-.+..+....|+.+-|..++++....+ |....+...-|..+
T Consensus 27 nseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~l 96 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLL 96 (289)
T ss_pred CHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHH
Confidence 4444455555554443332 1123445567777788888999999999988876552 33345555678888
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHH
Q 010446 298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377 (510)
Q Consensus 298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 377 (510)
...|++++|+++|+..++ ++|....++-.--.+...+|+.-+|++.+.+-++.+. .| ..+|.
T Consensus 97 Ea~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------~D----~EAW~ 158 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM------ND----QEAWH 158 (289)
T ss_pred HHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc------Cc----HHHHH
Confidence 999999999999998876 4555555555555667778998899999999888853 22 35778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHH
Q 010446 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIM 445 (510)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 445 (510)
.++.+|...|++++|.-++++.+-+ .|.....+..+|.++.-+| +..-|.++|.+++++.
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764 4555566677788777666 5778999999999963
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.8e-06 Score=70.65 Aligned_cols=195 Identities=15% Similarity=0.189 Sum_probs=148.0
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (510)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (510)
...+.++-+++..+.+.-... +...++.-.++-.+..+....|+.+-|..++++....+ +.++ .+...-
T Consensus 24 ~~rnseevv~l~~~~~~~~k~----~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~---RV~~lk 92 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKS----GALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSK---RVGKLK 92 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhh----cccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCCh---hHHHHH
Confidence 345677777777777665443 22356666777778888888999999999998876655 2223 334566
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 289 (510)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (510)
|..+...|++++|+++|+..++ ++|....++..--.+...+|+.-+|++.+..-++.+ +....+
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EA 156 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEA 156 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHH
Confidence 7788899999999999998875 345555556666667788899999999988888774 445789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHH
Q 010446 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVI 359 (510)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 359 (510)
|..++.+|...|+|++|.-++++.+-+ .|.....+..+|.+++-+| +..-|.++|.+++++.
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998864 4555556667777776655 5678999999999984
No 143
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=3.4e-06 Score=69.63 Aligned_cols=224 Identities=11% Similarity=0.010 Sum_probs=156.5
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (510)
....+..+..-+.+|....+|++|...+.++.+..+. +......+..+-..+.+......+.++..+|+++..++.+..
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 3344556666777888899999999999998876654 222234456677778888889999999999999999998763
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
.|+.+..-...+--....-++++|+.+|++++.+.+... ........+...++++.+..++++|-..+.+-..+.
T Consensus 106 ---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 106 ---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred ---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 343343333444445677899999999999999987632 223345567788899999999999999988877766
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010446 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396 (510)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (510)
.+.- ..+.....+.....+|....+|..|...++..-++-. -..+.-..+..+|-..| ..|+.++....+
T Consensus 181 ~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~------f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 181 DKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA------FLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc------ccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 5542 2344445566666677777899999999998766521 12223334445555554 456766665544
No 144
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.94 E-value=3.4e-08 Score=100.07 Aligned_cols=212 Identities=19% Similarity=0.131 Sum_probs=190.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (510)
-....+......|.+.+|.+ .-+++.......+.-++..+..+..++.++...|++++|+.+-.++.-+.++..|.+++
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 34455667777888999998 88888888877777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010446 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (510)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (510)
.....+.+++...+..++...|...+.++..+..- ..++++|..+.+..+++.++...++++.|+.+.+.|....+..
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L--s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL--SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc--ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999877654 3567788888888999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH
Q 010446 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461 (510)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 461 (510)
.++....++..+..+++.+...+++..|....+....++...+|++|.....+-.
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~ 1145 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSE 1145 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHH
Confidence 9988889999999999999999999999999999999999999999877765543
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=8e-08 Score=79.49 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=89.1
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (510)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (510)
..+..+..+.++|..+...|++++|+.+|++++.... +++....++.++|.++...|++++|+.++++++...
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-------DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3455777899999999999999999999999998732 333345678999999999999999999999999852
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHHHHHhCCCC
Q 010446 404 EKYKGKEHPSFVTHLLNLAASYSRSK-------NFVEAERLLRICLDIMTKTVGPDD 453 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~ 453 (510)
|.....+..+|.++...| ++++|+..++++++..++....++
T Consensus 103 --------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 103 --------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred --------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 344566677777777655 467777777777777666654443
No 146
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=5.8e-08 Score=86.56 Aligned_cols=252 Identities=16% Similarity=0.129 Sum_probs=152.9
Q ss_pred HHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010446 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (510)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (510)
-++..|+|..++.-.+ .. ..+.+........+.+++..+|+++..+.-... ..+|. ..+...
T Consensus 10 n~fy~G~Y~~~i~e~~-~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~ 71 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRL 71 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHH
T ss_pred HHHHhhhHHHHHHHhh-cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHH
Confidence 4567899999986665 11 122334445567788899999988765543321 12222 334456
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (510)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (510)
++..+...++-+.++.-++..+. ..............|.++...|++++|++.+.+. .+ ..
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~~---lE 132 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------GS---LE 132 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------TC---HH
T ss_pred HHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------Cc---cc
Confidence 66666554555444443332211 1112122344566678888899999998887643 11 23
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhhC
Q 010446 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKG 408 (510)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 408 (510)
.......++...++++.|.+.++.+.+. .. +..+.. ...+++....| ++.+|...|++..+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-------~e-D~~l~q--La~awv~l~~g~e~~~~A~y~f~El~~------- 195 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI-------DE-DSILTQ--LAEAWVNLATGGEKYQDAFYIFEELSD------- 195 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-------SC-CHHHHH--HHHHHHHHHHTTTCCCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC-cHHHHH--HHHHHHHHHhCchhHHHHHHHHHHHHh-------
Confidence 4445667899999999999888775443 22 222211 22333334444 68999999988532
Q ss_pred CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 010446 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALY 485 (510)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~ 485 (510)
..+....+++.++.++..+|+|++|.+.+++++. .+|....++.+++.+....|+. +.+.+++.+...
T Consensus 196 -~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 196 -KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 2234567788999999999999999999999875 2455567889999999999998 445556655443
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=9e-08 Score=79.19 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=88.5
Q ss_pred CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (510)
..+..+..++.+|..+...|++++|+.+|++++.... +.+....++.++|.++...|++++|+.++++++..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 3456677789999999999999999999999998642 23344678999999999999999999999999987
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHcC
Q 010446 278 NRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~ 322 (510)
.|.....+..+|.++...|+ +++|+..++++++..++...
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 34556777888888877665 56666666666666655543
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=5.6e-08 Score=86.64 Aligned_cols=263 Identities=17% Similarity=0.145 Sum_probs=161.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
.++.++-.|+|..++.-++ +. ....+........+.+++..+|+++..+.-... ..+|...
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~--~~--------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---------~~~~~l~ 67 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS--LK--------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---------SSSPELQ 67 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH--CH--------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---------TSSCCCH
T ss_pred HHHHHHHhhhHHHHHHHhh--cc--------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---------CCChhHH
Confidence 4566788899999987655 11 223455667778889999999998766543321 1223322
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (510)
+...++..+...++-+.++.-++. ....... .........|.++...|++++|++.+.+.
T Consensus 68 -av~~la~y~~~~~~~e~~l~~l~~-------~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------- 128 (290)
T PF04733_consen 68 -AVRLLAEYLSSPSDKESALEELKE-------LLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------- 128 (290)
T ss_dssp -HHHHHHHHHCTSTTHHCHHHHHHH-------CCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------
T ss_pred -HHHHHHHHHhCccchHHHHHHHHH-------HHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------
Confidence 235556555443444444333322 2212211 22334556778899999999999887653
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
Q 010446 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG--NAEEAVELYKKALRVIK 360 (510)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~ 360 (510)
....+......+|..+++++.|.+.++.+-++ . .+...+....+.+....| ++.+|...|++..+.+
T Consensus 129 --~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~- 197 (290)
T PF04733_consen 129 --GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----D---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF- 197 (290)
T ss_dssp --TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----S---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred --CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-
Confidence 12345556678899999999999888776542 1 122222222233333334 6899999999854321
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCH-HHHHHHHH
Q 010446 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF-VEAERLLR 439 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~ 439 (510)
++ ...+++.+|.++..+|++++|...+++++. ..|....++.+++.+....|+. +.+.+++.
T Consensus 198 -----~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 198 -----GS----TPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp -----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred -----CC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 11 234568899999999999999999998764 2355667888999999999998 55666666
Q ss_pred HHHHHHHHHhCCCChhhH
Q 010446 440 ICLDIMTKTVGPDDQSIS 457 (510)
Q Consensus 440 ~al~~~~~~~~~~~~~~~ 457 (510)
+.... .|+||.+.
T Consensus 261 qL~~~-----~p~h~~~~ 273 (290)
T PF04733_consen 261 QLKQS-----NPNHPLVK 273 (290)
T ss_dssp HCHHH-----TTTSHHHH
T ss_pred HHHHh-----CCCChHHH
Confidence 65442 35665544
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.88 E-value=1e-07 Score=73.71 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (510)
.+++.+|..+...|++++|+..+.+++.. .++++....++..+|.++...|++++|+.++++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46788999999999999999999999876 22344456788999999999999999999999998753 344
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
+....++..+|.++...|++++|..++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 555677899999999999999999999999987
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.87 E-value=8.6e-08 Score=74.17 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (510)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (510)
.+++.+|..+...|++++|...+.+++.. .++++....++..+|.++...|++++|+.++++++... +
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-------YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----P 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----C
Confidence 46788999999999999999999999876 34444445677889999999999999999999988753 3
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
.++....++..+|.++...|++++|..+++++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44455678899999999999999999999999885
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.79 E-value=1.1e-07 Score=88.01 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+...|..++..|++++|+.+|++++.. .|..+.++..+|.++...|++++|+..+++++.+. |
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P 67 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL----------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-------P 67 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c
Confidence 667889999999999999999999988 77888999999999999999999999999998875 4
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
....+++.+|.++...|++++|+..|++++.+
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 44566899999999999999999999999986
No 152
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=1.8e-06 Score=78.74 Aligned_cols=134 Identities=20% Similarity=0.179 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
....+.+..+..++..|++++|+..++..+.. .|+....+...+.++...++..+|.+.+++++..
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------ 369 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL------ 369 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Confidence 33556777888888888888888888875553 5666777777888888888888888888888874
Q ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (510)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (510)
.|.......++|..+.+.|++.+|+..++..+.. .++++ ..|..||+.|..+|+..+|...+-+....
T Consensus 370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-------~p~dp---~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-------DPEDP---NGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-------CCCCc---hHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 3444556677888888888888888888776654 23333 34566788888887777777666555443
No 153
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=2.9e-05 Score=74.41 Aligned_cols=208 Identities=13% Similarity=0.172 Sum_probs=125.0
Q ss_pred HHHHH-HHHHHcCChhHHHHHHHHH------HHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446 121 LFNEV-KSMIMMGNKNDAIDLLQAN------YEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (510)
Q Consensus 121 l~~~~-~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (510)
+++.+ ..+-+..++++|+++|++. +++.+-.+ +......-...|.-+...|+++.|+..|-.+..+.+
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf-----p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF-----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC-----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 34433 5566778889999888754 44433222 333344445567777788888888887754432221
Q ss_pred h----cC--------------CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010446 194 S----LK--------------DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255 (510)
Q Consensus 194 ~----~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 255 (510)
. ++ .+.......|-.++.-|...|+|+.|.++|.++-. ...-...|
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------------~~dai~my 801 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL----------------FKDAIDMY 801 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch----------------hHHHHHHH
Confidence 1 00 01111112234566777778888888887766521 11224567
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHHcC-------
Q 010446 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF------SRILKIYTKVYG------- 322 (510)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~------- 322 (510)
.+.|++++|.++.++.. ........|..-+.-+-..|+|.+|+.+| .+++.++.+..-
T Consensus 802 ~k~~kw~da~kla~e~~---------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECH---------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred hccccHHHHHHHHHHhc---------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence 77788888776665543 23345566777777777788887777765 355665554421
Q ss_pred --CCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 323 --ENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 323 --~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
..|++ ...+...+|.-+...|+...|...|-++-+.
T Consensus 873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 11222 3456677888888999999998888776543
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.74 E-value=1.1e-07 Score=68.02 Aligned_cols=84 Identities=20% Similarity=0.187 Sum_probs=65.1
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (510)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (510)
..|+++.|+.+++++++.. +..+ ....+..+|.+++..|++++|+.++++ .... +......+.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-------~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~ 64 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-------PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLL 64 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-------CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHC-------CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHH
Confidence 3689999999999999872 1122 566777899999999999999999988 3332 2234446677
Q ss_pred HHHHHhhhcHHHHHHHHHHH
Q 010446 210 GSMYSTLENYEKSMLVYQRV 229 (510)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~a 229 (510)
|.++..+|++++|+..++++
T Consensus 65 a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999875
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.72 E-value=7.1e-07 Score=67.36 Aligned_cols=102 Identities=28% Similarity=0.305 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (510)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (510)
.+.+.+|.++...|+.++|+.+|++++.. |...+....++..+|..+...|++++|+..+++++.. .|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-------~p 69 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-------FP 69 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CC
Confidence 35678999999999999999999999884 4455666789999999999999999999999998865 24
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (510)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (510)
+++....+...++.++...|+.++|+..+-.++.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4333344556788999999999999999877654
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.71 E-value=4.9e-07 Score=68.23 Aligned_cols=102 Identities=26% Similarity=0.330 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (510)
.+.+.+|.++-..|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... +++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 35788999999999999999999999885 44455667889999999999999999999999988632 233
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (510)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (510)
+........++.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33455566688899999999999999877664
No 157
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.70 E-value=0.0001 Score=70.77 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=125.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHH------HHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIYHR------VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (510)
.|-.-|.+|.+..++++|+++|++ ++++.+-.. +...+..-...|.-+...|+++.|+..|-++-...+..
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 455567777788888888888765 444443322 22333344456777888899998888876543322111
Q ss_pred ---cC-CCCh-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 010446 321 ---YG-ENDG-------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383 (510)
Q Consensus 321 ---~~-~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~ 383 (510)
.+ ...+ .....|-.++.-|...|+|+-|.++|.++-.. ..-...|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~------------------~dai~my 801 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF------------------KDAIDMY 801 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh------------------HHHHHHH
Confidence 00 0011 11122445677777888888888877664322 2234567
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH------HHHHHHHHHHh--------
Q 010446 384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL------RICLDIMTKTV-------- 449 (510)
Q Consensus 384 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~-------- 449 (510)
.+.|++..|..+-++.. + ...+...|...+.-..+.|+|.+|..+| .+++.++.+..
T Consensus 802 ~k~~kw~da~kla~e~~-------~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECH-------G--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred hccccHHHHHHHHHHhc-------C--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence 77788887777655542 1 2344556666777777777777777665 34555554432
Q ss_pred -CCCChh-hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010446 450 -GPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (510)
Q Consensus 450 -~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 484 (510)
+..|++ ...+...+|.-|...|+..+|...|-++-
T Consensus 873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 122333 34566788999999999999888776653
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.69 E-value=1.9e-07 Score=66.70 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=65.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (510)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (510)
+|+++.|+.+++++++... .++ ....+..+|.+|+..|++++|+.++++ .+. .+........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence 6899999999999998742 122 455677799999999999999999998 443 2234566677899
Q ss_pred HHHHcCChHHHHHHHHHH
Q 010446 296 LFIKEGKAVDAESVFSRI 313 (510)
Q Consensus 296 ~~~~~g~~~~A~~~~~~a 313 (510)
++..+|++++|++.++++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.69 E-value=3.9e-07 Score=84.52 Aligned_cols=113 Identities=11% Similarity=-0.009 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446 165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL 244 (510)
Q Consensus 165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 244 (510)
+...|..++..|+|++|+..|++++... |....++..+|.++...|++++|+..+++++.+. |..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~~ 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD-------PNNAELYADRAQANIKLGNFTEAVADANKAIELD--------PSL 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCC
Confidence 4556788889999999999999999764 3345568999999999999999999999999873 445
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc
Q 010446 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300 (510)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 300 (510)
..+++.+|.++...|++++|+..|++++++ .|........++.+....
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999987 344455555566554443
No 160
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.68 E-value=0.00011 Score=72.53 Aligned_cols=265 Identities=11% Similarity=0.014 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC--CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK--DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (510)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (510)
+......++......++.+|..++.++.......+ ......+...-..|.+....|++++|+++.+.++......
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~--- 491 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA--- 491 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---
Confidence 34455667777889999999999988776654311 1122334444456777888999999999999998875332
Q ss_pred CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (510)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (510)
.....+.++..+|.+..-.|++++|..+..++.+..++.. .......+....+.++..+|+...|. -.++......
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~ 567 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIRE 567 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHH
Confidence 2234567788999999999999999999999999887753 22334455666788899999433322 2222222222
Q ss_pred HcCCCChH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010446 320 VYGENDGR---VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396 (510)
Q Consensus 320 ~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (510)
......+. ...+...+...+. +++.+..-....++..... .+.+......+..|+.+....|++++|...+
T Consensus 568 q~l~q~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~~~~---~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 568 QHLEQKPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVGSVY---TPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHhhhcccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhhhhc---ccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 21122222 2233333333333 3777777777777665432 3333333334468999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhH-HHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446 397 EECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRIC 441 (510)
Q Consensus 397 ~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (510)
.+......... .+.+. +.++.........+|+.++|.....+.
T Consensus 642 ~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 642 DELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 98887765431 23332 233333344556788998888877763
No 161
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=4.4e-06 Score=76.33 Aligned_cols=133 Identities=14% Similarity=0.045 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (510)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (510)
....+.+..+..++..|++++|+..++..+... |.....+...+.++...++..+|.+.+++++...
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------ 370 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-------PDNPYYLELAGDILLEANKAKEAIERLKKALALD------ 370 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Confidence 334455666666666666666666666644332 2222234455666666666666666666666542
Q ss_pred CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (510)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (510)
|.......++|..|...|++.+|+..++..+.- .|+....|..||..|..+|+..+|...+.+...
T Consensus 371 --P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 371 --PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred --CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 222344556666666666666666666655442 445555666666666666666665555544443
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.65 E-value=1.9e-07 Score=63.94 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHH
Q 010446 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-RDKEAEKLVLEALYI 486 (510)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 486 (510)
+.++..+|.++...|++++|+.+|++++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 467889999999999999999999999996 5677789999999999999 799999999999986
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.65 E-value=2e-07 Score=63.81 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 010446 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI 316 (510)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 316 (510)
+..+..+|.++...|++++|+.+|++++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567899999999999999999999999998 5777899999999999999 799999999999985
No 164
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=2.8e-05 Score=79.64 Aligned_cols=249 Identities=15% Similarity=0.156 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
|.-+..|..........++.++|.+..++|+....-.-+........++.|+-.. -|.-+.-.+.|++|.+++.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhcc---
Confidence 4445556666677888999999999999999865211111222344455555444 4566677788888887742
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
....+..|..+|...+++++|.++++..++-+. .....|...+..++.+.+-+.|...+.+|+...
T Consensus 1529 ------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1529 ------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred ------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 246778899999999999999999999988653 345678889999999999999999999999985
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (510)
++ ..| .......|.+-++.|+.+.+..+|+..+.. +|.....|..+...-.+.|+.+.+..+|+
T Consensus 1595 Pk-----~eH---v~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1595 PK-----QEH---VEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred ch-----hhh---HHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 43 123 234467899999999999999999988763 56666788888888899999999999999
Q ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh
Q 010446 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIA 490 (510)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 490 (510)
+++.+. -.+..+..++..-.-|.+ .|+-+.....=.+|.+..++.
T Consensus 1659 Rvi~l~------l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1659 RVIELK------LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred HHHhcC------CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 999852 233344444444444444 366555555556666665543
No 165
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.63 E-value=0.00087 Score=67.47 Aligned_cols=367 Identities=14% Similarity=0.068 Sum_probs=221.3
Q ss_pred hHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHHH--HHHhhCChHHHHHHHHHH
Q 010446 112 NDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ-INAGNKGIEEVAILDIIAL--GYVYIGDLKFVQSLLDMM 188 (510)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~ 188 (510)
.++...+-..+-.+......+..+++++..+++....... .+... .++...++..+-. ++...|+++.+...+++.
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333334444555567788899999999998776654 22222 4444445554433 456788888888877665
Q ss_pred HHhhhhcCCCc-------------------------h----------HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 189 SGIVDSLKDDE-------------------------P----------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 189 ~~~~~~~~~~~-------------------------~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
....+...... + ..+-++..-|......|..++|.++++++++..
T Consensus 252 q~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i 331 (608)
T PF10345_consen 252 QQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQI 331 (608)
T ss_pred HHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Confidence 55443321110 1 112234444666777788889999999999998
Q ss_pred HHhcC---CCCh---------------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHH
Q 010446 234 ESRYG---KTSI---------------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT-ESADLVLPLFSLG 294 (510)
Q Consensus 234 ~~~~~---~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la 294 (510)
++... ...+ ....++...+.+....|++.+|......+.....+...+ ........++..|
T Consensus 332 ~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~g 411 (608)
T PF10345_consen 332 EKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLG 411 (608)
T ss_pred HHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHH
Confidence 88651 1110 123345566777888999999999999888776553321 1223456678889
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446 295 SLFIKEGKAVDAESVFSRILKIYTKVYG---ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (510)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (510)
..+...|+.+.|+.+|.+..-....... ....-...+..|+..++...+.-.....-+.+.++..+.... ......
T Consensus 412 l~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~-~~~~~~ 490 (608)
T PF10345_consen 412 LYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCS-NSPNSY 490 (608)
T ss_pred HHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcccc-CCccHH
Confidence 9999999999999999855533222212 222234556677788887766544422222233322211100 111112
Q ss_pred HHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHH-HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446 372 MENMRIDLAELLH--IVGRGQEGRELLEECLLIT-EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (510)
Q Consensus 372 ~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (510)
....+..+-.++. ..-...++...+.++++.. ... .+......++..++..++ .|+..+.......+....++.
T Consensus 491 ~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~--~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 491 NRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKL--GNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred HHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence 2222222222222 2234458999999999988 444 234455566777888777 888888888888888877664
Q ss_pred hCCCChhhHH---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 449 VGPDDQSISF---PMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 449 ~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
++...... +-..++..+...|+.++|.....+.-.
T Consensus 568 --~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 568 --SDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred --hhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 22222222 234567778899999999998877654
No 166
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.7e-05 Score=65.14 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=124.8
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 010446 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (510)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (510)
+.-.+++++|.++|.++-.++ ....++..|-..|.++-+...+.. +..+.+.+|..
T Consensus 24 fgg~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~--skhDaat~Yve 79 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVE 79 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHH
Confidence 334458888888888775543 334445555555666655554443 22334556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (510)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (510)
.+.+|.. ++.++|...++++++++.... .-...+.-+..+|.+|... .++++|+.+|+.+-+.+... .....
T Consensus 80 A~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e----es~ss 152 (288)
T KOG1586|consen 80 AANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE----ESVSS 152 (288)
T ss_pred HHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch----hhhhh
Confidence 6666654 489999999999999987652 1223445566788888775 89999999999999987642 22333
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
...++...|..-...++|.+|+..|++.....-.. +- ....-..+..-|.|+.-..+.-.+...+++-.+
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n--~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN--NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 34556667777788899999999999865532110 00 011112334456666666776666655555544
No 167
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=4.7e-06 Score=85.04 Aligned_cols=210 Identities=15% Similarity=0.089 Sum_probs=159.6
Q ss_pred ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (510)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (510)
+|..+..|...-..+...++.++|.+..++|+....-..+........++.||-. .-|.-+.-.+.|++|.+.+..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl~kVFeRAcqycd~- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESLKKVFERACQYCDA- 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHHHHhcch-
Confidence 4555666777777888999999999999999976411111111223334444443 445667778888888876422
Q ss_pred cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (510)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (510)
...+..|..+|...+++++|.++++..++.+.+. ..+|..+|..++++++-+.|..++.+|+
T Consensus 1530 --------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1530 --------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred --------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2567889999999999999999999999886532 4577889999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHH
Q 010446 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (510)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (510)
....+. .........|.+-++.|+.+.+..+|+..+. .+|...+.|..+...-.+.|+.+.+..+|
T Consensus 1592 ~~lPk~------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1592 KSLPKQ------EHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred hhcchh------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 876442 2345556778899999999999999998887 36777778888888888889988888888
Q ss_pred HHHHHH
Q 010446 481 LEALYI 486 (510)
Q Consensus 481 ~~al~~ 486 (510)
++++.+
T Consensus 1658 eRvi~l 1663 (1710)
T KOG1070|consen 1658 ERVIEL 1663 (1710)
T ss_pred HHHHhc
Confidence 888764
No 168
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=5.6e-05 Score=69.06 Aligned_cols=304 Identities=14% Similarity=0.066 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHH--HHHHHHHHHHhhhcHHHHHHHHHHHHH-HHHHh
Q 010446 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA--ILLHMGSMYSTLENYEKSMLVYQRVIN-VLESR 236 (510)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~ 236 (510)
+.+..+...+..++..|++.+|.+.+...-.....-+...|.... .++++|.+++..|.|.-+..+|.+|++ ...+.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 445567778888999999999999886543222221223344433 357999999999999999999999996 33332
Q ss_pred cCC---C------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC-----
Q 010446 237 YGK---T------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----- 302 (510)
Q Consensus 237 ~~~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----- 302 (510)
-.. . .......+++.|..|...|++-.|.++|.++...+... ...|..++.++....+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCima~~~~l~e 389 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCIMALQKGLLE 389 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHhhhhhhh
Confidence 111 0 11346778999999999999999999999998876442 2444555554432100
Q ss_pred --------------------------------------------hHHHHHHHHHHHHHHHHH------------------
Q 010446 303 --------------------------------------------AVDAESVFSRILKIYTKV------------------ 320 (510)
Q Consensus 303 --------------------------------------------~~~A~~~~~~al~~~~~~------------------ 320 (510)
.+=|.-+++.++-+..+.
T Consensus 390 e~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~ 469 (696)
T KOG2471|consen 390 EGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGS 469 (696)
T ss_pred hccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCC
Confidence 122333344443332000
Q ss_pred -----------------------cCCCChH--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446 321 -----------------------YGENDGR--------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (510)
Q Consensus 321 -----------------------~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (510)
..+..|. ....+.+.+.+-...|+.-.|+..-.+.++..+-. ...
T Consensus 470 ~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS----~~~ 545 (696)
T KOG2471|consen 470 SSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLS----KIY 545 (696)
T ss_pred CCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhh----hHH
Confidence 0001111 12345566777788999999999988888764321 111
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHH------H--HHHHhhCC-------------C-------Chh--HHHHHH
Q 010446 370 SIMENMRIDLAELLHIVGRGQEGRELLEECL------L--ITEKYKGK-------------E-------HPS--FVTHLL 419 (510)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~--~~~~~~~~-------------~-------~~~--~~~~~~ 419 (510)
. .-.+..-|+.+....+..+|...+.--+ . .....++. . .++ ......
T Consensus 546 k--fLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~ 623 (696)
T KOG2471|consen 546 K--FLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFA 623 (696)
T ss_pred H--HHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHH
Confidence 1 1122234555566778888877664311 0 00000000 0 111 224578
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (510)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (510)
+||..+.-+|++++|..++..+..+..+. .+..+.++ ---+-..+|+...|...+++.
T Consensus 624 nLa~a~alq~~~dqAk~ll~~aatl~hs~----v~~~A~~l--avyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 624 NLAAALALQGHHDQAKSLLTHAATLLHSL----VNVQATVL--AVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhcc----ccHHHHHH--HHHHHHhcCCCcchHHHHHhc
Confidence 99999999999999999999998875422 11111111 111234789999998877764
No 169
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.9e-06 Score=76.99 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (510)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (510)
....-|+.|++.|+|..|...|++++.........+.. ....++.|++.++..+++|.+|+....+++++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 35678999999999999999999999887643222211 24567899999999999999999999999997
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHH
Q 010446 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKAL 356 (510)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al 356 (510)
.+....+++.-|.++..+|+++.|+..|++++++. |..-.+...+..+-.+..++. ...+.|.+++
T Consensus 287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678999999999999999999999999999862 333344445555544444333 3356666666
Q ss_pred HHH
Q 010446 357 RVI 359 (510)
Q Consensus 357 ~~~ 359 (510)
...
T Consensus 354 ~k~ 356 (397)
T KOG0543|consen 354 AKL 356 (397)
T ss_pred hcc
Confidence 553
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.59 E-value=2.7e-06 Score=74.53 Aligned_cols=103 Identities=14% Similarity=0.073 Sum_probs=88.5
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446 120 ELFNEVKSM-IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 120 ~l~~~~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
..+..+..+ ...|+|++|+..|++.+.. .++.+..+.+++.+|.+|+..|++++|+..|+.++... ++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y----P~ 212 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK-------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY----PK 212 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CC
Confidence 356666655 6679999999999999987 44466667899999999999999999999999998775 56
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
++....+++.+|.++...|++++|...|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67788889999999999999999999999998764
No 171
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.59 E-value=4.6e-05 Score=64.42 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (510)
...+++.+...++.|++++|+..|+..... .+..|....+...++.+++..++++.|+...++.+.+. +
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----P 102 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----P 102 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----C
Confidence 345889999999999999999999987754 55567778899999999999999999999999998886 6
Q ss_pred CchHHHHHHHHHHHHHHhh-----hcH---HHHHHHHHHHHHHHHHhcCCCCh--------------hHHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTL-----ENY---EKSMLVYQRVINVLESRYGKTSI--------------LLVTSLLGMAKVL 255 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~-----g~~---~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~la~~~ 255 (510)
.+|....+++..|.+++.. .+. .+|..-+++.+..+ ++++ .++.--..+|..|
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888876643 233 34444444444432 2222 1222334578899
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 010446 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310 (510)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 310 (510)
.+.|.+..|+..++.+++-.. +.+....++..+...|..+|-.++|.+.-
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHhcChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999999999988743 34556678888999999999999887653
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.58 E-value=3.2e-06 Score=74.10 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=88.1
Q ss_pred HHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446 246 TSLLGMAKVL-GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (510)
Q Consensus 246 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (510)
...+..|..+ ...|+|++|+..|++.++.+ ++.+....+++.+|.+|...|++++|+..|+++++.+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3445555554 56799999999999999873 3445557889999999999999999999999999864 56
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
++....++..+|.++...|++++|...|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888999999999999999999999999998874
No 173
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.57 E-value=0.00031 Score=62.94 Aligned_cols=254 Identities=19% Similarity=0.155 Sum_probs=146.4
Q ss_pred HhhCChHHHHHHHHHHHHhhh-hcCCCchHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHH-h-cCCCCh----hH
Q 010446 173 VYIGDLKFVQSLLDMMSGIVD-SLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLES-R-YGKTSI----LL 244 (510)
Q Consensus 173 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-~-~~~~~~----~~ 244 (510)
...|+++.|..++.++..... ..+.....++..+++.|......+ +++.|..+++++.++... . ....++ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 468999999999999887763 222333456788999999999999 999999999999999755 1 111222 45
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (510)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (510)
..++..++.+|...+.++...+ ..++++..+...+ +++ ..+..--.+....++.+++.+.+.+++....-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~---~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~----- 153 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKP---EVFLLKLEILLKSFDEEEYEEILMRMIRSVDH----- 153 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCc---HHHHHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence 6788999999999998865544 4445555444322 222 22222223333378889888888888764210
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--ChHHH--HHHHHHHH
Q 010446 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEG--RELLEECL 400 (510)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al 400 (510)
..............+.. .....|...+...+...-. .+++. ..... -+..++...+ +.... ++.....+
T Consensus 154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~---~~~~~-~~e~~--vl~~~~~~~~~~~~~~~~~i~~l~~~~ 226 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFK---SSEDQ-WLEKL--VLTRVLLTTQSKDLSSSEKIESLEELL 226 (278)
T ss_pred ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhC---CChhH-HHHHH--HHHHHHHHcCCccccchhHHHHHHHHH
Confidence 11111111111111222 3345666666666554322 11221 22222 1222333222 22222 33444444
Q ss_pred HHHHHhhC-CCChhHH----HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 401 LITEKYKG-KEHPSFV----THLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 401 ~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
....+..+ +-.+... ..+.+.|...++.++|++|..+|+-++.
T Consensus 227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 43332222 2222222 3455678889999999999999998764
No 174
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.56 E-value=2.9e-05 Score=65.39 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=164.1
Q ss_pred hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010446 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (510)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (510)
..+.++|+..|++++++- +.....-..++-.+..+++.+|+|++-...|.+.+...+.....+.... +.+.+-..
T Consensus 40 e~~p~~Al~sF~kVlelE---gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDy 114 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE---GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDY 114 (440)
T ss_pred ccCHHHHHHHHHHHHhcc---cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHH
Confidence 347889999999998876 4444555566888899999999999999999999988776544443321 22222222
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh----HHHH
Q 010446 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGM 330 (510)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~ 330 (510)
-....+.+--.++|+..++..+... +......+-..||.+|+..|+|.+-.+.+++.-..++...|.++. ....
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 2334455555667777776665543 223334455679999999999999888888887777665454432 2455
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010446 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (510)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (510)
.|..-..+|..+.+-.+-..+|++++.+-..+ |.+..+..+...=|..+.+.|++++|-.-|-+|..-+.+...+
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp- 267 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP- 267 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-
Confidence 56556678888888888888999999886543 4454555555555677888999999988887777766655322
Q ss_pred ChhHHHHHHHHHHHHHhcc
Q 010446 411 HPSFVTHLLNLAASYSRSK 429 (510)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g 429 (510)
......-|..||..+.+.|
T Consensus 268 RRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 268 RRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred chhHHHHHHHHHHHHHHcC
Confidence 2223334555666666554
No 175
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00016 Score=61.08 Aligned_cols=252 Identities=16% Similarity=0.093 Sum_probs=157.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
-++.++-.|.|..++...++.-. .+........+...|..+|.+...+.-... +.. +...
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~-----------~~~~~e~d~y~~raylAlg~~~~~~~eI~~--------~~~-~~lq 73 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSS-----------SKTDVELDVYMYRAYLALGQYQIVISEIKE--------GKA-TPLQ 73 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcc-----------ccchhHHHHHHHHHHHHccccccccccccc--------ccC-ChHH
Confidence 45666778888888775554321 224556667788888888887665443322 122 2222
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (510)
. ...++.+...-++.++-+.-..+-+.. ............-|.+|..-|++++|++.......+
T Consensus 74 A-vr~~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------- 137 (299)
T KOG3081|consen 74 A-VRLLAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------- 137 (299)
T ss_pred H-HHHHHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH---------
Confidence 2 345555555555544444333332221 112222334555688899999999999888763322
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 010446 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI 359 (510)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 359 (510)
.+...-..++.++.+.+-|...++++.++.+. .++..||..+.. .++..+|.-+|++.-+..
T Consensus 138 ----E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~ 203 (299)
T KOG3081|consen 138 ----EAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT 203 (299)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc
Confidence 22223346778888899999988888876322 234445544433 345777777777654321
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (510)
++. ..+++.++.+...+|++++|...++.++.- .+....++.++..+-...|...++.+-+-
T Consensus 204 ------~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 204 ------PPT----PLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred ------CCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 122 345688999999999999999999999873 34446777888888888898887776554
Q ss_pred HHHH
Q 010446 440 ICLD 443 (510)
Q Consensus 440 ~al~ 443 (510)
.-+.
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4443
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=1.4e-06 Score=64.14 Aligned_cols=96 Identities=26% Similarity=0.343 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCCh
Q 010446 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454 (510)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (510)
++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++.. .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 35789999999999999999999988752 233367888999999999999999999999874 23
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (510)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (510)
....++..+|.++...|++++|..++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33367889999999999999999999988764
No 177
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.52 E-value=1.6e-05 Score=58.79 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+-..+..+...|+.+.|++.|.+++.+ .|..+.+|++.+..+..+|+.++|+.-+++++++. ++...
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l----------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~tr 112 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCL----------APERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQTR 112 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHh----------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Cccch
Confidence 555778889999999999999999998 88889999999999999999999999999999987 55556
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
....++...|.+|..+|+.+.|..-|+.+-++
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 66777889999999999999999999998776
No 178
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.52 E-value=1.2e-06 Score=64.51 Aligned_cols=96 Identities=26% Similarity=0.390 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (510)
++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..++++++... +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 4678899999999999999999999876 23334778899999999999999999999998752 2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
....++..+|.++...|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 23367888999999999999999999988764
No 179
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.8e-06 Score=74.02 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch--------HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP--------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
+.....-|..|++.|+|..|...|++++.........++ ....++.+++.++.++++|.+|+....+++.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 334566788999999999999999998887753222221 13456889999999999999999999999986
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH-HHHHHH
Q 010446 234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA-ESVFSR 312 (510)
Q Consensus 234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 312 (510)
.+....+++..|.++...|+|+.|+..|++++++ .|..-.+...+..+-....++.+. .+.|..
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999999999999998 455556666666665554444433 455555
Q ss_pred HHH
Q 010446 313 ILK 315 (510)
Q Consensus 313 al~ 315 (510)
+..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 544
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.47 E-value=0.00075 Score=60.25 Aligned_cols=262 Identities=13% Similarity=0.077 Sum_probs=176.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEV-AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (510)
.+....-.|+++.|.+-|+.++. +|+.- .-+..|-.--...|+.+.|..+-+.+.... |..
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~-----------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-------p~l 187 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLD-----------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-------PQL 187 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-----------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-------cCC
Confidence 34556788999999999999875 33322 122333333456899999999999887765 444
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL--VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
..+....-...+..|+++.|+++.+.......- +++..+. +..+..-+.... ..+...|.....++.++
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi--e~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL------ 258 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVI--EKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL------ 258 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc------
Confidence 444455555667889999999999877654321 2222222 222222222222 34578888888888876
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
.|+.+..-..-+..++..|+..++-.+++.+.+. ..||.+... |.....-+.++.-++++-.+..
T Consensus 259 --~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~l-------Y~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 259 --APDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALL-------YVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred --CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHH-------HHHhcCCCcHHHHHHHHHHHHh
Confidence 4566667777889999999999999999988774 356665444 3333344456666777666533
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc-cCHHHHHHHHH
Q 010446 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLR 439 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 439 (510)
- .+++ .......+..-...|++..|..-.+.+..+. | ...++..|+.+-... |+-.++..++-
T Consensus 324 l----k~nn---aes~~~va~aAlda~e~~~ARa~Aeaa~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 324 L----KPNN---AESSLAVAEAALDAGEFSAARAKAEAAAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred c----Cccc---hHHHHHHHHHHHhccchHHHHHHHHHHhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 2 2333 3344668888899999999988877776543 1 235677788887765 99999999999
Q ss_pred HHHH
Q 010446 440 ICLD 443 (510)
Q Consensus 440 ~al~ 443 (510)
+++.
T Consensus 388 qav~ 391 (531)
T COG3898 388 QAVK 391 (531)
T ss_pred HHhc
Confidence 9987
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.47 E-value=0.00089 Score=59.77 Aligned_cols=298 Identities=13% Similarity=0.015 Sum_probs=197.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
.+......|+-..|..+..++-.++. ....+-++..-+..-...|+++.|.+-|+.++.- |+..
T Consensus 90 tGliAagAGda~lARkmt~~~~~lls--------sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PEtR 153 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLS--------SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--------PETR 153 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhh--------ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--------hHHH
Confidence 34445667888888888887765432 2222334455566777899999999999987632 3322
Q ss_pred -HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446 204 -AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (510)
Q Consensus 204 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (510)
..+..|-.--...|..+.|..|-+++.... |....+....-...+..|+++.|+++.+....... .+++
T Consensus 154 llGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~ 223 (531)
T COG3898 154 LLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKD 223 (531)
T ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchh
Confidence 112333333456799999999999987754 33344444555667789999999999987765421 1111
Q ss_pred Ccc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 283 SAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 283 ~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
..+ .+..+..-+.... ..+...|...-.++.++ .|+...+-..-+..++..|+..++-.+++.+.+.
T Consensus 224 ~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-- 292 (531)
T COG3898 224 VAERSRAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA-- 292 (531)
T ss_pred hHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--
Confidence 111 1222222232222 34577788887777775 3455555566788899999999999999998875
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (510)
..||. ++.+|....--+.++.-++++-.+.. -.++........+..-...|++..|..--+.
T Consensus 293 ------ePHP~-------ia~lY~~ar~gdta~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 293 ------EPHPD-------IALLYVRARSGDTALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred ------CCChH-------HHHHHHHhcCCCcHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 23444 34455555445566667777665432 3456677788889999999999999988877
Q ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010446 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALY 485 (510)
Q Consensus 441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 485 (510)
+..+. | ...++..|+.+-... |+-.+...++.+++.
T Consensus 355 a~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 355 AAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 76631 2 235677888888876 999999999998876
No 182
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.0001 Score=60.77 Aligned_cols=193 Identities=10% Similarity=0.103 Sum_probs=122.1
Q ss_pred hhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010446 174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253 (510)
Q Consensus 174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 253 (510)
..+.+++|.+++.++. +.|....+++.|=..|.++-+...+.. +..+.+.+|...+.
T Consensus 26 g~~k~eeAadl~~~Aa---------------------n~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~ 82 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAA---------------------NMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAAN 82 (288)
T ss_pred CCcchHHHHHHHHHHH---------------------HHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHH
Confidence 3446677766666543 344444555666666666666655542 22344566666666
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 010446 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (510)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (510)
+|.. +++.+|..+++++++++..++ .-...+.-+..+|.+|... .++++|+.+|+++-+.+..- ......-.++
T Consensus 83 cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~ 157 (288)
T KOG1586|consen 83 CYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCL 157 (288)
T ss_pred Hhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHH
Confidence 6655 499999999999999987654 1222344566788888765 89999999999999987532 1112233456
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM----ENMRIDLAELLHIVGRGQEGRELLEECLL 401 (510)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (510)
...+..-...++|.+|+..|++.....- +++.. -..+..-|.++.-..+.-.+...+++-.+
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~-------~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSL-------DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 6677777888999999999998876532 22221 11233445666665666555555444333
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.45 E-value=0.00013 Score=61.72 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010446 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (510)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (510)
+..+++-|....+.|++++|.+.|+..... -+..|..-.+...++..+.+.+++++|+...++-+.. .
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-------y 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-------Y 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-------C
Confidence 566788888899999999999999987753 2455666788999999999999999999999999888 4
Q ss_pred CCChHHHHHHHHHHHHHHHc-----CChH---HHHHHHHHHHHHHHHhhCCCChhH--------------HHHHHHHHHH
Q 010446 367 LDDSIMENMRIDLAELLHIV-----GRGQ---EGRELLEECLLITEKYKGKEHPSF--------------VTHLLNLAAS 424 (510)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~~al~~~~~~~~~~~~~~--------------~~~~~~la~~ 424 (510)
|.++....+++..|.++... .+.. +|+.-+++.+..+ |+.+.. +.--..+|..
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777776643 2223 3444444443322 222211 1122356899
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446 425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (510)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (510)
|.+.|.+..|+..++.+++-. ++.+....++..+..+|..+|-.++|...
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 999999999999999999854 34566678889999999999999998764
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.43 E-value=1.8e-06 Score=58.18 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=54.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
.+|..+...|++++|+..|+++++ .+|....++..+|.++..+|++++|+.+|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578999999999999999999987 46888999999999999999999999999999987
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.42 E-value=1.5e-06 Score=58.53 Aligned_cols=60 Identities=25% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
.+|..+...|++++|+..|++++. .+|....++..+|.++..+|++++|+.+|++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 578999999999999999999987 468889999999999999999999999999999754
No 186
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.40 E-value=2.1e-05 Score=58.27 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (510)
..+-.-|......|+.+.|++.|.+++.+ -|..+.+|++.+..+.-+|+.++|++-+++++++. |+..
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~t 111 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQT 111 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccc
Confidence 34555677888999999999999999998 45668999999999999999999999999999985 4445
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
.....++...|.+|..+|+.+.|..-|+.+-++
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 557788999999999999999999999998876
No 187
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.39 E-value=8.2e-05 Score=62.72 Aligned_cols=242 Identities=14% Similarity=0.111 Sum_probs=161.7
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC-CCchHHHHHHHH
Q 010446 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-DDEPLLDAILLH 208 (510)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 208 (510)
...++++|+.-|++++++ .+.....-..++..+..+++.+|+|++....|.+++...+... .+.... ..+.
T Consensus 39 ~e~~p~~Al~sF~kVlel------EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~ 110 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLEL------EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINS 110 (440)
T ss_pred cccCHHHHHHHHHHHHhc------ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHH
Confidence 344789999999999987 1333444556788889999999999999999998887654321 111111 1222
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC----c
Q 010446 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES----A 284 (510)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~ 284 (510)
+-..-....+.+--..+|+..++..+.. .+......+...+|.+|+..|+|.+-.+.+++....++...|.++ .
T Consensus 111 IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt 188 (440)
T KOG1464|consen 111 ILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT 188 (440)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence 2222233445555556676666655443 223334455668999999999999998888888777765554433 2
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA-MCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (510)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (510)
.....|..-..+|..+.+-.+-..+|++++.+.... .||....+ .-.=|..+.+.|++++|-.-|-+|.+.+.+.
T Consensus 189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs- 264 (440)
T KOG1464|consen 189 QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES- 264 (440)
T ss_pred hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc-
Confidence 334555555678888888888888999999875443 35554333 2333567888999999999999988887764
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcC
Q 010446 364 YMSLDDSIMENMRIDLAELLHIVG 387 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g 387 (510)
+........-|..+|..+.+.|
T Consensus 265 --GspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 265 --GSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred --CCcchhHHHHHHHHHHHHHHcC
Confidence 3333344445667788887765
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.39 E-value=4.5e-06 Score=71.11 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+++.+..++..|+|..|...|..-++. .++.+..+.+++.||.+++.+|++++|...|..+.+-. +++|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~----P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY----PKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC----CCCC
Confidence 888999999999999999999998876 66688889999999999999999999999999888765 5567
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
....+++.+|.+...+|+.++|...++++++.+
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 777789999999999999999999999998875
No 189
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.38 E-value=0.00076 Score=65.10 Aligned_cols=173 Identities=17% Similarity=0.087 Sum_probs=119.6
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChHH---HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446 299 KEGKAVDAESVFSRILKIYTKVYGENDGRV---GMAMCSLAHAKC----ANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (510)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (510)
-.|+-+.+++.+.++.+. . +-..|-. ...|+....... .....+.|.+.+....+.+ |+..
T Consensus 200 F~gdR~~GL~~L~~~~~~-~---~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------P~s~- 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-E---NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------PNSA- 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-C---CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------CCcH-
Confidence 468888999988887651 1 1111211 112222222222 2345677777777777663 3332
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Q 010446 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (510)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (510)
..+...|+++...|+.++|++.+++++....+. ......++..+|.++..+++|++|..++.+..+.
T Consensus 268 --lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------- 334 (468)
T PF10300_consen 268 --LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------- 334 (468)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------
Confidence 344778999999999999999999988533322 1233457889999999999999999999988872
Q ss_pred CChhhHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHHhcCCCCc
Q 010446 452 DDQSISFPMLHLGITLYHLNRD-------KEAEKLVLEALYIREIAFGKDSL 496 (510)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~ 496 (510)
+....+.-.+..|.++...|+. ++|.+++.++-.+..++.|...|
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 3344455557788999999999 89999999999998888885443
No 190
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.37 E-value=0.0017 Score=58.31 Aligned_cols=253 Identities=17% Similarity=0.140 Sum_probs=145.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHh-c-CCCCc----ch
Q 010446 214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN-R-GTESA----DL 286 (510)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~-~-~~~~~----~~ 286 (510)
..+|+++.|..++.++-..............+..+++.|......+ ++++|..+++++.++.... . ...++ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 5689999999999999877642211222367889999999999999 9999999999999997551 1 11222 34
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010446 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (510)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (510)
..++..++.+|...+.++...+ ..++++..+..++ +++..... --.++.+.++.+++.+.+.+++....-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~L---~l~il~~~~~~~~~~~~L~~mi~~~~~----- 153 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFLL---KLEILLKSFDEEEYEEILMRMIRSVDH----- 153 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHHH---HHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence 5677889999999888764444 4445555554443 33333211 122333378899999999888876321
Q ss_pred CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhcc--CHHHH--HHHHHHH
Q 010446 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSK--NFVEA--ERLLRIC 441 (510)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g--~~~~A--~~~~~~a 441 (510)
++. .+..+ .....-+.. .....|...+...+...-. ..++ ..... .+..++...+ +.... ++-.+..
T Consensus 154 ~e~-~~~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~~----~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~ 225 (278)
T PF08631_consen 154 SES-NFDSI-LHHIKQLAE-KSPELAAFCLDYLLLNRFK----SSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEEL 225 (278)
T ss_pred ccc-hHHHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHhC----CChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHH
Confidence 111 11111 111211222 2335566666655542211 1121 22211 1222222222 22222 3334444
Q ss_pred HHHHHHHhC-CCChhh----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010446 442 LDIMTKTVG-PDDQSI----SFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (510)
Q Consensus 442 l~~~~~~~~-~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 484 (510)
++...+..+ +-.+.. ...+.+.|...++.++|.+|..+|+-++
T Consensus 226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 443333222 222222 2335677889999999999999999876
No 191
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.0006 Score=57.66 Aligned_cols=246 Identities=17% Similarity=0.124 Sum_probs=148.3
Q ss_pred HHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010446 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (510)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (510)
-++..|+|..++...++.... +........+.+.|..+|++..-+.-...+ ..+ ...+...
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--------~~~~e~d~y~~raylAlg~~~~~~~eI~~~----------~~~-~lqAvr~ 77 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--------KTDVELDVYMYRAYLALGQYQIVISEIKEG----------KAT-PLQAVRL 77 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--------cchhHHHHHHHHHHHHcccccccccccccc----------cCC-hHHHHHH
Confidence 345678888777666553321 112222455667777777766544322211 111 1233444
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (510)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (510)
++.....-++.++-+.-..+-+.. ............-|.+|...|++++|++.......+ .
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E 138 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------------E 138 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------------H
Confidence 555554445544433333222221 111222234445578899999999999887763222 2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHh
Q 010446 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKY 406 (510)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 406 (510)
+...-..++.+..+++-|...++++.++.++ .++..||..+.. .+++.+|.-+|++.-+
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------------~tLtQLA~awv~la~ggek~qdAfyifeE~s~----- 201 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDED------------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE----- 201 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchH------------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence 2222345677888899999988888877432 133556666554 3456777777766432
Q ss_pred hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010446 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (510)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (510)
..+.+...++.++.++..+|+|++|...++.++.- .+....++.++-.+-...|...++..-+-.
T Consensus 202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 23445577889999999999999999999999982 344466778888888889988777654433
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=4.4e-05 Score=62.14 Aligned_cols=203 Identities=16% Similarity=0.091 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (510)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (510)
...+..++..|..|-..|-..-|.--+.+++.+ .|..+.+++.+|..+...|+++.|.+.|+..+++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----- 128 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 128 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence 455677888888999999999999999999987 6778899999999999999999999999988875
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH-HHHH
Q 010446 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL-EECL 400 (510)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al 400 (510)
+|..-.+..|.|..+..-|++.-|.+-+.+-.+. .+++|... .|..+. ...-+..+|..-+ +++.
T Consensus 129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAE 194 (297)
T ss_pred ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHH
Confidence 4555567788888888899999988776654443 34444432 211111 1223455555433 3332
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHH
Q 010446 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (510)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (510)
...+.. .....+-..+| +..+ ...++++....+.. ..-.....++++.+|..+...|+..+|..+|
T Consensus 195 ~~d~e~-----WG~~iV~~yLg-------kiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf 260 (297)
T COG4785 195 KSDKEQ-----WGWNIVEFYLG-------KISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALF 260 (297)
T ss_pred hccHhh-----hhHHHHHHHHh-------hccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 221111 11111111122 2111 12222222211100 0001223456778888888888888888888
Q ss_pred HHHHH
Q 010446 481 LEALY 485 (510)
Q Consensus 481 ~~al~ 485 (510)
+-++.
T Consensus 261 KLaia 265 (297)
T COG4785 261 KLAVA 265 (297)
T ss_pred HHHHH
Confidence 77764
No 193
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=0.00039 Score=56.81 Aligned_cols=205 Identities=14% Similarity=0.140 Sum_probs=134.8
Q ss_pred CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (510)
.+...+..++..|..|-..|-..-|..-|.+++.+. |..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--- 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---
Confidence 345567778899999999999999999999999873 667888999999999999999999999999987
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HH
Q 010446 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK-AL 356 (510)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 356 (510)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+- .+.+|-.. .|..+ -...-++.+|..-+.+ +.
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl---~E~k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYL---NEQKLDPKQAKTNLKQRAE 194 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHH---HHhhCCHHHHHHHHHHHHH
Confidence 5666677788888889999999998877655442 23334321 12111 1233466677655433 22
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010446 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436 (510)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (510)
.. +..... .++...| .|+..+ ...++++.+-.+.. ..-......++..+|..|...|+.++|..
T Consensus 195 ~~---------d~e~WG---~~iV~~y--LgkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 195 KS---------DKEQWG---WNIVEFY--LGKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred hc---------cHhhhh---HHHHHHH--HhhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 22 212111 1222222 233321 12333333222100 00012344688899999999999999999
Q ss_pred HHHHHHH
Q 010446 437 LLRICLD 443 (510)
Q Consensus 437 ~~~~al~ 443 (510)
+|+-++.
T Consensus 259 LfKLaia 265 (297)
T COG4785 259 LFKLAVA 265 (297)
T ss_pred HHHHHHH
Confidence 9998876
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.33 E-value=4.4e-05 Score=74.04 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHhhCC---hHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhc--------HHHHHHHHHH
Q 010446 160 EEVAILDIIALGYVYIGD---LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN--------YEKSMLVYQR 228 (510)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~ 228 (510)
..+.-++..|..+...++ ...|+.+|++++++. |..+.++-.++.++..... ...+....++
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345555666777766554 778999999998875 5556566666666544322 2333333333
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 010446 229 VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAES 308 (510)
Q Consensus 229 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 308 (510)
++.+ +..+....++..+|..+...|++++|...+++|+++ .+ ...+|..+|.++...|++++|++
T Consensus 410 a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 410 IVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EM-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3322 112333467788888888999999999999999998 34 36799999999999999999999
Q ss_pred HHHHHHHH
Q 010446 309 VFSRILKI 316 (510)
Q Consensus 309 ~~~~al~~ 316 (510)
.|++|+.+
T Consensus 475 ~~~~A~~L 482 (517)
T PRK10153 475 AYSTAFNL 482 (517)
T ss_pred HHHHHHhc
Confidence 99999986
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.30 E-value=2.8e-05 Score=59.71 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
..++..|...++.|+|.+|++.++..... -+.++....+...++.+|+..|++++|+..+++.+++. +.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh----P~ 79 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTR-------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH----PT 79 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC
Confidence 34888999999999999999999887655 44466677889999999999999999999999998874 77
Q ss_pred chHHHHHHHHHHHHHHhhhc---------------HHHHHHHHHHHHHHH
Q 010446 199 EPLLDAILLHMGSMYSTLEN---------------YEKSMLVYQRVINVL 233 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~al~~~ 233 (510)
+|.+..+++..|.+++.+.. ..+|...|++.+..+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 88888889999999888876 667777777776654
No 196
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.29 E-value=1e-05 Score=68.94 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (510)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (510)
.++.|.-+...|+|.+|...|..-+.-+ ++.+....+++.||.+++.+|++++|...|..+..- -|.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 4778888889999999999999887754 566778889999999999999999999999998874 367888
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
..++++.||.+...+|+.++|...|+++++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999998866
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=98.28 E-value=8.2e-06 Score=64.10 Aligned_cols=100 Identities=8% Similarity=0.023 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (510)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (510)
...+..++..+..++..|++++|..+|+-.... ++...+.+..||.++...++|++|+..|..+..+..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~- 102 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK- 102 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 356677899999999999999999999977665 777788899999999999999999999998877642
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 010446 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN 231 (510)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 231 (510)
++|.. .+..|.||...|+...|...|+.++.
T Consensus 103 ---~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 ---NDYRP---VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ---CCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 22222 68899999999999999999999887
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.28 E-value=6e-05 Score=73.15 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChH--------HHHHHHHHH
Q 010446 120 ELFNEVKSMIMMGN---KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK--------FVQSLLDMM 188 (510)
Q Consensus 120 ~l~~~~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~ 188 (510)
.++-+|..+...++ ..+|+.+|++++++ +|+.+.++-.++.++.....+. .+....+++
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l----------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS----------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 35556666665554 78999999999998 8888888888888776543332 222222222
Q ss_pred HHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHH
Q 010446 189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268 (510)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 268 (510)
..+ .. .+....++..+|......|++++|...+++|+.+. + .+.+|..+|.++...|++++|++.|
T Consensus 411 ~al----~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 411 VAL----PE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred hhc----cc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 221 11 12223557778888888999999999999999862 3 2578999999999999999999999
Q ss_pred HHHHHH
Q 010446 269 HRVITI 274 (510)
Q Consensus 269 ~~al~~ 274 (510)
++|+.+
T Consensus 477 ~~A~~L 482 (517)
T PRK10153 477 STAFNL 482 (517)
T ss_pred HHHHhc
Confidence 999987
No 199
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.28 E-value=1.7e-06 Score=52.31 Aligned_cols=41 Identities=32% Similarity=0.279 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497 (510)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 497 (510)
+.++.++|.+|..+|++++|..++++++++.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999974
No 200
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=3.6e-05 Score=71.20 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=97.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010446 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (510)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (510)
-.++...++++.|+.++++..+. . +. +...++.++...++-.+|++.+++++.. .|...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~-------~---pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~ 234 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRER-------D---PE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS 234 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhc-------C---Cc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence 34455678899999999886654 1 22 2245899999999999999999999853 34457
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (510)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (510)
..+...+..+...++++.|++..+++..+ .|....+|..|+.+|...|++++|+..+..+
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 78888999999999999999999999985 5777889999999999999999999877644
No 201
>PRK11906 transcriptional regulator; Provisional
Probab=98.25 E-value=8.6e-05 Score=68.51 Aligned_cols=163 Identities=11% Similarity=0.048 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh---C------ChHHHHHHHHH
Q 010446 120 ELFNEVKSMIMMG---NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---G------DLKFVQSLLDM 187 (510)
Q Consensus 120 ~l~~~~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g------~~~~A~~~~~~ 187 (510)
.++-.|......+ ..+.|+.+|.+++.. ...+|..+.++..++.+++.. | +..+|....++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK-------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 3445555544443 345677788888722 233889999999999988654 2 22344455555
Q ss_pred HHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHH
Q 010446 188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267 (510)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 267 (510)
+.++. +.-+.++..+|.+....|+++.|...|++|+.+ +|..+.+++..|.+....|+.++|.+.
T Consensus 330 Aveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 330 VSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55442 333456889999999999999999999999986 477789999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcch-HHHHHHHHH-HHHHcCChHHHHHHHHHH
Q 010446 268 YHRVITILELNRGTESADL-VLPLFSLGS-LFIKEGKAVDAESVFSRI 313 (510)
Q Consensus 268 ~~~al~~~~~~~~~~~~~~-~~~~~~la~-~~~~~g~~~~A~~~~~~a 313 (510)
.++++++ +|.. ......+-. .|+ ....++|+.+|-+-
T Consensus 395 i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQL--------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHhcc--------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 9999987 3332 333333333 344 45578888777543
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=9.6e-05 Score=64.01 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHH
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE---NYEKSMLVYQRVINVLE 234 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~ 234 (510)
+|.++.-|..||.+|+..|++..|...|.++.++. ++++++ +..+|.+++.+. .-.++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEI---LLGLAEALYYQAGQQMTAKARALLRQALAL-- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHH---HHHHHHHHHHhcCCcccHHHHHHHHHHHhc--
Confidence 88889999999999999999999999999999986 444544 556666655543 456888999999875
Q ss_pred HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (510)
++....+++.+|..++..|+|.+|...++..++..
T Consensus 223 ------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 ------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 45667889999999999999999999999998873
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=98.22 E-value=2.4e-05 Score=61.54 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=83.1
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (510)
+++.....+..|.-++..|++++|..+|+-+.... +.....+..||.++..+++|++|+..|..+..+..
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--- 102 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--- 102 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence 66677788999999999999999999998765532 22234478999999999999999999999887642
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (510)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (510)
++| ...+..|.||...|+.+.|...|+.+++
T Consensus 103 --~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 --NDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --CCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 222 2367889999999999999999999887
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.001 Score=56.10 Aligned_cols=186 Identities=18% Similarity=0.214 Sum_probs=130.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCh-HHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL-KFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
+......|...+.+.-+.......+++. .. ..+|.. +..+..+++- ..
T Consensus 129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii-----------------~~-~e~~~~~ESsv~lW~KR-------------l~ 177 (366)
T KOG2796|consen 129 AELQQYLGNPQESLDRLHKLKTVVSKIL-----------------AN-LEQGLAEESSIRLWRKR-------------LG 177 (366)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHH-----------------HH-HHhccchhhHHHHHHHH-------------HH
Confidence 3444567777777776665555433322 11 123333 3444444432 22
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (510)
.+.+.+..++.-.|+|.-+...+.+.++. +++........+|.+-++.|+.+.|..++++.-+...+.. +.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~ 248 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GL 248 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--cc
Confidence 34677788888899999999999888873 2233445566789999999999999999997765544432 12
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
.....+..+.+.+|.-.+++.+|...+.+.+.. ++..+.+.++.|.+....|+...|++.++.+++.
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233456778888999999999999999888763 4566677888999999999999999999988877
No 205
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=6.9e-05 Score=69.37 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=98.9
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010446 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (510)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (510)
.+-..+...++++.|+.++++..+.. |.. ...++.++...++..+|+..+.+++.. .|....
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~-------pev---~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD-------PEV---AVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC-------CcH---HHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 34455566789999999998866432 443 456888998899999999999999853 344477
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 312 (510)
.+...+..+...++++.|+.+.++++++ .|....+|..|+.+|...|++++|+..++.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888999999999999999999999997 677789999999999999999999977663
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.19 E-value=0.0011 Score=52.96 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
|.+.. .+.+|....+.|++.+|...|++++.-. -......+..+++..+..+++..|...+++..+.-.
T Consensus 87 pTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p--- 155 (251)
T COG4700 87 PTVQN-RYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP--- 155 (251)
T ss_pred hhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC---
Confidence 44444 6789999999999999999999998632 122355678899999999999999999998877521
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
..........+|.++...|++.+|+..|+.++..+ ..+ .+....+..+.++|+.++|..-+....+..
T Consensus 156 ---a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y------pg~---~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 156 ---AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY------PGP---QARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred ---ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC------CCH---HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 11234456678999999999999999999999864 111 233445788889999999988887766655
Q ss_pred Hh
Q 010446 360 KD 361 (510)
Q Consensus 360 ~~ 361 (510)
.+
T Consensus 224 ~r 225 (251)
T COG4700 224 KR 225 (251)
T ss_pred Hh
Confidence 44
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8e-05 Score=64.50 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=92.5
Q ss_pred ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 010446 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIY 317 (510)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 317 (510)
+|..+.-|..||.+|...|++..|...|.+|+++ .++....+..+|.++..+. .-.++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 4667888999999999999999999999999998 4556677778888776554 356888999999884
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH
Q 010446 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 375 (510)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 375 (510)
+|....+...||..++..|+|.+|...++..++.. .++.+....+
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l------p~~~~rr~~i 267 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL------PADDPRRSLI 267 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------CCCCchHHHH
Confidence 56677889999999999999999999999999873 4455554433
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.16 E-value=0.00048 Score=54.83 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (510)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (510)
......+|......|++.+|..+|++++.-. .......+..+++.....+++..|...+++..+.- .
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------p 155 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------P 155 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------C
Confidence 4456789999999999999999999998631 23345677889999999999999999998877642 1
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (510)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (510)
..........+|..+...|++.+|+..|+.++..+ |+.. .....+..+.++|+.++|..-+....+...
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-------pg~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-------PGPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------CCHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 11233455668999999999999999999999874 2222 234578899999999999887766655443
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.15 E-value=0.00012 Score=56.32 Aligned_cols=104 Identities=17% Similarity=0.101 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010446 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (510)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (510)
...+..-|...+..|+|++|++.|+.....+ |..+....+...++.+|...|++++|+..+++-+++ .
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-------P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----h 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-------PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----H 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-------CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C
Confidence 3456778888999999999999999877663 445555667789999999999999999999999886 4
Q ss_pred CCChhHHHHHHHHHHHHHhccC---------------HHHHHHHHHHHHHH
Q 010446 409 KEHPSFVTHLLNLAASYSRSKN---------------FVEAERLLRICLDI 444 (510)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~ 444 (510)
+.||....+++..|.++..+.. ..+|...|++.+..
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 7788888999999999988876 67777777777764
No 210
>PRK11906 transcriptional regulator; Provisional
Probab=98.15 E-value=0.00016 Score=66.82 Aligned_cols=163 Identities=16% Similarity=0.057 Sum_probs=116.8
Q ss_pred HHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHH
Q 010446 206 LLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVIT 273 (510)
Q Consensus 206 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~ 273 (510)
++..|......+ ..+.|+.+|.+++... +-+|..+.++..++.++... .+..+|..+.++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 355555554443 4567888888888431 23577788888888887654 234567777777777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010446 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK 353 (510)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (510)
+ .+..+.++..+|.+....++++.|...|++|+.+ +|..+.+++..|.+....|+.++|.+.++
T Consensus 333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6 5666889999999999999999999999999985 67888999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446 354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (510)
Q Consensus 354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (510)
+++++ +|.... +.+.......|. ....++|+.+|-+
T Consensus 397 ~alrL-------sP~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQL-------EPRRRK-AVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHhcc-------CchhhH-HHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 99987 222211 112111222343 3456778777644
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0014 Score=55.35 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (510)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (510)
..+.+.+..++...|.|.-....+.+.++.. ++..|. ....+|.+.++.|+.+.|..+|++.-+...+..+ -
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---~e~~p~---L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~ 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY---PEQEPQ---LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--L 248 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC---CcccHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--c
Confidence 3467788888889999999999998887643 233343 3678999999999999999999987765544422 2
Q ss_pred hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
.....+..+.+.+|.-.+++.+|...+.+.+.. ++..+.+.++-|.|....|+...|++..+.++++.
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 234556778899999999999999999888765 55667888999999999999999999999888763
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.11 E-value=1.8e-05 Score=72.65 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=63.4
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (510)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (510)
..|.....++++|.+|...|+|++|+..|++++++ .|+++....+++++|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999996 3444433356999999999999999999999999997
No 213
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.08 E-value=0.0061 Score=53.45 Aligned_cols=228 Identities=26% Similarity=0.351 Sum_probs=163.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446 131 MGNKNDAIDLLQANYEAVKEQINAGNKGI--EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (510)
Q Consensus 131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (510)
.+.+..+...+...+.. .+ .........+..+...+++..+...+...... ...+.....+..
T Consensus 36 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 100 (291)
T COG0457 36 LGELAEALELLEEALEL----------LPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-----ELLPNLAEALLN 100 (291)
T ss_pred HhhHHHHHHHHHHHHhc----------CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----hhccchHHHHHH
Confidence 34555555555555543 22 23567788888999999999999999887653 122445556788
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 010446 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK-VLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (510)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (510)
.+..+...+++..+...+.+++..... . .......+. ++...|++++|...+.+++... +......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 167 (291)
T COG0457 101 LGLLLEALGKYEEALELLEKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELA 167 (291)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchH
Confidence 899999999999999999888764211 1 122223333 8999999999999999995531 0012345
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (510)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (510)
..+...+..+...+++++|+..+.+++...... ....+..++..+...+++++|...+..++....
T Consensus 168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------- 233 (291)
T COG0457 168 EALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP------- 233 (291)
T ss_pred HHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc-------
Confidence 566667777888999999999999998863211 456778899999999999999999999988732
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (510)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (510)
. ....+..++..+...+.++++...+.+++...
T Consensus 234 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 234 D---NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred c---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 22344667777777778999999998887753
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.08 E-value=2.4e-05 Score=71.97 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=64.3
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (510)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (510)
..|.....++++|.+|...|++++|+..|++++++ .|++.....+++++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999998 5566554457899999999999999999999999986
No 215
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=1.7e-05 Score=53.89 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=49.3
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
++..|++++|+..|++++.. .|....++..+|.+|...|++++|...++++....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR----------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH----------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 36789999999999999988 88899999999999999999999999999887664
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.05 E-value=0.0037 Score=54.86 Aligned_cols=231 Identities=27% Similarity=0.341 Sum_probs=164.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (510)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (510)
.+.+..+...+...+..... ..........+..+...+++..+...+...... ...+.....+...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 103 (291)
T COG0457 36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL 103 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence 34455555555554443210 013456778888999999999999999988764 124556778888999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH
Q 010446 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374 (510)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 374 (510)
.+...+++..+...+.+++.... .+ .......+. ++...|++++|...+.+++.. .+.......
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~ 168 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALEL-------DPELNELAE 168 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCccchHH
Confidence 99999999999999988876421 11 122223333 899999999999999999552 111122334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCCh
Q 010446 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454 (510)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (510)
.....+..+...+++++|+..+.+++...... ....+..++..+...+++++|...+..++... +
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 233 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------P 233 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------c
Confidence 44566666888999999999999988764221 45678889999999999999999999998852 2
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010446 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (510)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 488 (510)
.....+..++..+...|.++++...+.+++....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 2344566777777777889999999998887553
No 217
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.03 E-value=1.2e-05 Score=48.46 Aligned_cols=41 Identities=34% Similarity=0.520 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (510)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (510)
+.++.++|.+|..+|++++|..++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999885
No 218
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0086 Score=52.68 Aligned_cols=299 Identities=11% Similarity=0.096 Sum_probs=184.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI----EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (510)
+..+.......++++++..+.+.+..... ...++ ..-.+...+|..+...|+.++-....+........++.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~----~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K 83 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQG----ASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK 83 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhcc----ccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh
Confidence 44555566666778888888777664211 11121 22346788999999999999888877766555433222
Q ss_pred CchHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYST-LENYEKSMLVYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (510)
+..+.+...+-..+.. .+..+.-+..+..+++...+. +.. ..-..-..+...|...++|.+|+......+.-.
T Consensus 84 --akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rEl 158 (411)
T KOG1463|consen 84 --AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLREL 158 (411)
T ss_pred --HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333444333332 344556666777777665432 111 122334468889999999999999999998888
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010446 276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKK 354 (510)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (510)
++.. +.+....++..-..+|....+..+|...+..|.......+.| |.. +..-..-|.++....+|.-|..||-+
T Consensus 159 KKlD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyE 234 (411)
T KOG1463|consen 159 KKLD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYE 234 (411)
T ss_pred Hhcc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHH
Confidence 8765 445556666667788999999999998888877766555432 332 22223336667777899999999999
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHH
Q 010446 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFV 432 (510)
Q Consensus 355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~ 432 (510)
|.+-+... .++......+-.+--+-...+..++--.++.-=..+. . ......+...++..+.. ..+|+
T Consensus 235 AfEgf~s~----~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y----~g~~i~AmkavAeA~~nRSLkdF~ 304 (411)
T KOG1463|consen 235 AFEGFDSL----DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y----AGRDIDAMKAVAEAFGNRSLKDFE 304 (411)
T ss_pred HHcccccc----CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c----cCcchHHHHHHHHHhcCCcHHHHH
Confidence 99887652 3333444444455555556666666544443211111 1 11233566667776653 34667
Q ss_pred HHHHHHHHHHH
Q 010446 433 EAERLLRICLD 443 (510)
Q Consensus 433 ~A~~~~~~al~ 443 (510)
.|+.-|..-+.
T Consensus 305 ~AL~~yk~eL~ 315 (411)
T KOG1463|consen 305 KALADYKKELA 315 (411)
T ss_pred HHHHHhHHHHh
Confidence 77666665443
No 219
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00013 Score=58.61 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (510)
+-.-|+-++..|+|.+|..-|..|+.++... ........|.+.|.+.+.++.++.|+.-+.+++++ .|.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt 166 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT 166 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence 4566888899999999999999999987553 12356778899999999999999999999999998 566
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (510)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (510)
...++...|.+|..+..|++|+.-|.+.++.
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 7788888999999999999999999999885
No 220
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.0003 Score=56.65 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (510)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (510)
.....+-..+..++..|+|.+|..-|..||++..... ......+|.+.|.+++.++.++.|+.-..+++.+.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--- 164 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--- 164 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence 3455577788999999999999999999999854432 45667788899999999999999999999999875
Q ss_pred CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
|....++...+.+|....+|++|+.-|.+.++.
T Consensus 165 ----pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 ----PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ----chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 667777888999999999999999999998876
No 221
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00053 Score=62.93 Aligned_cols=305 Identities=12% Similarity=0.017 Sum_probs=165.8
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh-------
Q 010446 164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR------- 236 (510)
Q Consensus 164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 236 (510)
.+..-+...+..|.|+.-.++++....+.+..+ |.. ++.--..|+..|.... ....++...+-...
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~---~v~---~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~ 91 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSG---PVL---HNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVS 91 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhcccccc---cee---eehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchh
Confidence 334444455677888888888877665542211 111 2222223444444332 22222222221111
Q ss_pred cCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (510)
Q Consensus 237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (510)
.+.+.......+++.|.+|+....+..|++.....+...+... ...........-..+....+.++|+.++.-.-++
T Consensus 92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~ 168 (696)
T KOG2471|consen 92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI 168 (696)
T ss_pred cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223355678899999999999999988777766544332 1112222333445566667778887765533222
Q ss_pred HHHH----cCC----------CChHHHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446 317 YTKV----YGE----------NDGRVGMA-----------MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (510)
Q Consensus 317 ~~~~----~~~----------~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (510)
.... .|. .+|..+.. ...-...+....+..-+..-.+.++.+. + +.
T Consensus 169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a------~-~s-- 239 (696)
T KOG2471|consen 169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA------Q-DS-- 239 (696)
T ss_pred HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc------C-CC--
Confidence 2111 010 01110000 0001112222222222222222222221 1 12
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HHHHH
Q 010446 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLD-IMTKT 448 (510)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~ 448 (510)
...+.-.+..++..|++.+|.+.+... .+.+...+...|. ....+++||.++++.|.|.-+..+|.+|+. ...+.
T Consensus 240 -~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 240 -SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred -cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 123355678888999999999887643 2222222222232 334568999999999999999999999996 43333
Q ss_pred hCC---C------ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 449 VGP---D------DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 449 ~~~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
-.. . .-....++++.|..|...|++-.|.++|.+++..+..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 211 1 1233567899999999999999999999999987743
No 222
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.92 E-value=4e-05 Score=52.03 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=47.2
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (510)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (510)
...|++++|+..+++++.. .|....++..+|.+|...|++++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5689999999999999987 5677889999999999999999999999998874
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.87 E-value=0.00014 Score=50.18 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=52.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (510)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (510)
..+|...+++++|++++++++.+ +|.....+...|.++...|++++|...++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56889999999999999999998 5667888999999999999999999999999976
No 224
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.87 E-value=0.025 Score=53.16 Aligned_cols=265 Identities=15% Similarity=0.107 Sum_probs=145.0
Q ss_pred HHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh-HHHH
Q 010446 169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTS 247 (510)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~ 247 (510)
+.+..+.|+++.-..+.... ..+.+ ......+......|+++++..+.+++.............. ....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~-------~~~~~---~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~ 74 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS-------NEDSP---EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRA 74 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc-------cCCCh---hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45667888988844443332 12222 1223334444588999999999999887765432221111 1111
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHHHcC--CC
Q 010446 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG-SLFIKEGKAVDAESVFSRILKIYTKVYG--EN 324 (510)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~ 324 (510)
+..+. .+....+.+++..+...... . ......+- ..-.+......-....+..+......+. ..
T Consensus 75 y~~l~-~lq~L~Elee~~~~~~~~~~---------~---~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~ 141 (352)
T PF02259_consen 75 YPSLV-KLQQLVELEEIIELKSNLSQ---------N---PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILL 141 (352)
T ss_pred HHHHH-HHhHHHHHHHHHHHHHhhcc---------c---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccc
Confidence 21111 11222333333333211100 0 00000010 0011111112223333444444333322 12
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HH
Q 010446 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-IT 403 (510)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~ 403 (510)
.......+...+.+..+.|+++.|...+.++....... ... ...+....+.++...|+..+|+..++..+. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~---~~~---~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS---ESL---LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc---cCC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34577889999999999999999999999887653211 111 223446679999999999999999988887 22
Q ss_pred HHhh-------------------------CCCChhHHHHHHHHHHHHHhc------cCHHHHHHHHHHHHHHHHHHhCCC
Q 010446 404 EKYK-------------------------GKEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPD 452 (510)
Q Consensus 404 ~~~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~ 452 (510)
.... .......+.++..+|...... +..+++...|+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 287 (352)
T PF02259_consen 216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-------- 287 (352)
T ss_pred hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------
Confidence 2210 011233456677777777777 7888889999988875
Q ss_pred ChhhHHHHHHHHHHHHhc
Q 010446 453 DQSISFPMLHLGITLYHL 470 (510)
Q Consensus 453 ~~~~~~~~~~la~~~~~~ 470 (510)
+|....++..+|..+...
T Consensus 288 ~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 288 DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 344455677777766654
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.86 E-value=0.0071 Score=56.33 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=96.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh------
Q 010446 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------ 326 (510)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------ 326 (510)
.-..+..++..-++..++|+++ +|+.+.+|..|+.- ......+|+++++++++..+..++....
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3344567778888888999988 46667777776642 2334688999999999988776554311
Q ss_pred -----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 010446 327 -----------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 395 (510)
Q Consensus 327 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (510)
....+...+|.+..+.|+.++|++.++..++.. + ......+..+|..++...+.+.++..+
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-------p-~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-------P-NLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-------C-ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 123456779999999999999999999988762 1 222345789999999999999999988
Q ss_pred HHHH
Q 010446 396 LEEC 399 (510)
Q Consensus 396 ~~~a 399 (510)
+.+-
T Consensus 318 L~kY 321 (539)
T PF04184_consen 318 LAKY 321 (539)
T ss_pred HHHh
Confidence 8763
No 226
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.85 E-value=0.0031 Score=46.08 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=87.5
Q ss_pred HHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 287 VLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 287 ~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
+.+|..|+. -...-|-|++|...+++++++.+.+....-- ..+.++..|+..+..+|+|++++....+++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 445555544 3456689999999999999998766322211 2556778899999999999999999999999988
Q ss_pred hhccCCCCCh-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010446 361 DSNYMSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (510)
Q Consensus 361 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (510)
....+..+.. .+..+-.+.|..+...|+.++|+..|+.+-++..+..|
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 7654444432 34455678899999999999999999999988766544
No 227
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.84 E-value=0.0055 Score=44.85 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=85.5
Q ss_pred HHHHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHHhcCCCCc----chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 244 LVTSLLGMAKV--LGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 244 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
++.+|..|+.. ...-|-|++|...++++++..+.+.....- ..+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 34555555444 445689999999999999998776543221 235577889999999999999999999999988
Q ss_pred HHHcCCCChH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446 318 TKVYGENDGR----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (510)
Q Consensus 318 ~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (510)
.+.. .-+.+ .+.+.++.+..+...|+.++|+..|+.+-+...+.
T Consensus 86 NRRG-EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 86 NRRG-ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred hhcc-ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 7653 22222 45566778889999999999999999999887664
No 228
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.84 E-value=0.00015 Score=50.02 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=52.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
|..+|...+++++|+.++++++.+ +|.....+...|.++...|++++|...++++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356889999999999999999986 4666788899999999999999999999999987
No 229
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.015 Score=49.87 Aligned_cols=230 Identities=10% Similarity=0.104 Sum_probs=152.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH
Q 010446 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (510)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (510)
++.+....+..++++|+..|.+.+..-... ......+.-.+...++..|...|++..-.+...........+. .|.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~--dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft--k~k 82 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSK--DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT--KPK 82 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCCh--hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc--chh
Confidence 346777788899999999998887541000 0001223445778999999999999887776665544443322 244
Q ss_pred HHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 202 LDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 202 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
...+...+-.-+ .....++.-+......++...+.. ..-.....-..+...++..|.|.+|+....-.+.-.++..
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D- 159 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD- 159 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-
Confidence 444444443333 334566777777777776654320 0011223345678899999999999999999888877764
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (510)
+.+.....+..-..+|....+..++...+..|.......+.| |. .+..-..-|...+...+|.-|..+|-++++-+
T Consensus 160 -DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 160 -DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred -CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 456666777777889999999999988888777766655433 32 22222233566777889999999999998876
Q ss_pred Hh
Q 010446 360 KD 361 (510)
Q Consensus 360 ~~ 361 (510)
..
T Consensus 237 t~ 238 (421)
T COG5159 237 TL 238 (421)
T ss_pred cc
Confidence 54
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.019 Score=50.62 Aligned_cols=169 Identities=11% Similarity=0.019 Sum_probs=123.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+...+...+..|++.+|....++.++- .|....++..--..++..|+.......+++.+.. -+.+.|
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d----------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp 172 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDD----------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLP 172 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHh----------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCc
Confidence 444556677888888888888887765 6666666666777788888888888777776543 245556
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
-...+.-.++-.+...|-|++|++..++++++. +....+....+.++...|++.++.++..+.-...+.
T Consensus 173 ~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--- 241 (491)
T KOG2610|consen 173 CYSYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--- 241 (491)
T ss_pred HHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---
Confidence 666666677888889999999999999998863 444667778888999999999999988776554432
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (510)
.......-|...|.++...+.|+.|+..|++-+
T Consensus 242 -s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 242 -SWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -hhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 112223345566788888899999999998643
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.83 E-value=0.035 Score=53.80 Aligned_cols=179 Identities=18% Similarity=0.085 Sum_probs=121.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH---HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLV---LPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGEND 325 (510)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (510)
.+..-.|+-+.++..+.++.+. ..+ ..|... ..|+.....+.. ....+.|.+.+...... .
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------y 263 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------Y 263 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------C
Confidence 3344568999999999887652 111 111111 112222222221 33455566666665553 4
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 405 (510)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 405 (510)
|.....+...|.++...|+.++|++.+++++....+. ......++..++.++..+++|++|..++.+..+.
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~------~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~--- 334 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW------KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE--- 334 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH------HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---
Confidence 5556677888999999999999999999988543321 2223456789999999999999999999887763
Q ss_pred hhCCCChhHHHHHHHHHHHHHhccCH-------HHHHHHHHHHHHHHHHHhCCCChhh
Q 010446 406 YKGKEHPSFVTHLLNLAASYSRSKNF-------VEAERLLRICLDIMTKTVGPDDQSI 456 (510)
Q Consensus 406 ~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~ 456 (510)
.....+...+..|.++...|+. ++|.+++.++-....+..+...|..
T Consensus 335 ----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E 388 (468)
T PF10300_consen 335 ----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLE 388 (468)
T ss_pred ----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChH
Confidence 2344556677889999999999 8999999998888877655454433
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.81 E-value=0.014 Score=53.52 Aligned_cols=205 Identities=15% Similarity=0.199 Sum_probs=125.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHH
Q 010446 133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSM 212 (510)
Q Consensus 133 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (510)
.+..+.....+.+...+..++ ......+.+...+-..|....+|+.-+.+.+.+..+..- +-+....+....|.+
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd--~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~---~~~~~~~i~~~yafA 188 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLD--DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC---DVANQHNIKFQYAFA 188 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhC--CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc---chhcchHHHHHHHHH
Confidence 344455566666666666542 222334556677777899999999999999887665211 112223335667777
Q ss_pred HHh---hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHHHhcC
Q 010446 213 YST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 213 ~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~ 280 (510)
+.+ .|+.++|+..+..++.. ......+++..+|.+|... ...++|+..|.++.++
T Consensus 189 LnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~------ 255 (374)
T PF13281_consen 189 LNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI------ 255 (374)
T ss_pred HhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC------
Confidence 777 89999999999887543 2233455677777776543 2355666666666655
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (510)
+ + ....-.|++.++...|...+...-.++.........+ .+....-..+..++.+..-.|++++|...++++.
T Consensus 256 -~-~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 256 -E-P-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred -C-c-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2 2 2233456777777777655444333333311111111 1122233455567778888999999999999998
Q ss_pred HH
Q 010446 357 RV 358 (510)
Q Consensus 357 ~~ 358 (510)
..
T Consensus 333 ~l 334 (374)
T PF13281_consen 333 KL 334 (374)
T ss_pred hc
Confidence 76
No 233
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.77 E-value=0.00021 Score=62.38 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=83.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (510)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (510)
...|+-|+.+|.|++|+++|.+++.. .|.....+.+.+..|.+..+|..|+.-+..|+.+- ...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHH
Confidence 45688999999999999999999987 56667888999999999999999999999999863 456
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 329 GMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
..+|...+..-..+|...+|.+-++.++++
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 688889999999999999999999999987
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.77 E-value=0.031 Score=51.27 Aligned_cols=205 Identities=13% Similarity=0.141 Sum_probs=124.2
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (510)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (510)
.+..+.....+.+...+..++........+..++-..|....+|+.-+.+.+..-.+ ...+.+....+....|.++
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFAL 189 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHH
Confidence 333344445555555444433322233455667777788888888877776655433 1112233455666788888
Q ss_pred HH---cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhhccC
Q 010446 298 IK---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGNAEEAVELYKKALRVIKDSNYM 365 (510)
Q Consensus 298 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~ 365 (510)
.+ .|+.++|+..+..++.. .......++..+|.+|-. ....++|+..|.++.++.
T Consensus 190 nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~------ 256 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE------ 256 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC------
Confidence 88 89999999999887653 233344567777777643 234677888888877762
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (510)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (510)
++. ..-.|++.++...|...+...-.++.........+ .......+.+..++.+..-.|++++|...++++
T Consensus 257 -~~~----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 257 -PDY----YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred -ccc----cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 11256777888777654444333333311111111 122233345567788888999999999999999
Q ss_pred HHH
Q 010446 442 LDI 444 (510)
Q Consensus 442 l~~ 444 (510)
...
T Consensus 332 ~~l 334 (374)
T PF13281_consen 332 FKL 334 (374)
T ss_pred hhc
Confidence 874
No 235
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.73 E-value=0.00042 Score=60.62 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (510)
...+-+.|..|+++|.|++|+++|.+++.. .|..+..+.+.+.+|+++..|..|+.-...++.+.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~----------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd----- 161 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV----------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD----- 161 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhcc----------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-----
Confidence 334677899999999999999999999987 78888889999999999999999999999888775
Q ss_pred CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
..+..+|...|..-..+|...+|.+-++.++.+
T Consensus 162 --~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 162 --KLYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred --HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 455667888899999999999999999999886
No 236
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0066 Score=52.04 Aligned_cols=227 Identities=14% Similarity=0.125 Sum_probs=148.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (510)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (510)
.+|+-....+++++|+..|.+.+..-.........+.-.+...++.+|...|++..--+......+..... ..|...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~ 84 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKIT 84 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHH
Confidence 45666677889999999998887641000000112334567889999999999987766666655555443 233333
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010446 330 MAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (510)
Q Consensus 330 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (510)
.....+-.-. .....++.-+..+...++...+. .........-..++.++.+.|+|.+|+......+.-.++.
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~-- 158 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY-- 158 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--
Confidence 3333333222 33456777777777777766542 1111222334567889999999999999999888877776
Q ss_pred CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHH--HHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--LHLGITLYHLNRDKEAEKLVLEALYI 486 (510)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 486 (510)
++.+....++..-..+|....+..++..-+..|.......+- |....+- ..-|.......+|.-|..+|-++++-
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC---Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC---PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC---CHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 356666777777788999999999999888877766544432 2222222 22355566777889999999888875
Q ss_pred HH
Q 010446 487 RE 488 (510)
Q Consensus 487 ~~ 488 (510)
+.
T Consensus 236 ft 237 (421)
T COG5159 236 FT 237 (421)
T ss_pred cc
Confidence 53
No 237
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.69 E-value=0.073 Score=53.33 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=139.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (510)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
......+++.+|+....+.++. .|+...+...-|..+.++|..++|..+++..... +.++ ...
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk----------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~----~~~D---~~t 79 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKK----------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL----KGTD---DLT 79 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC----CCCc---hHH
Confidence 3456778899999999888876 7888888888899999999999999777654332 2222 223
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (510)
+..+-.+|..+|++++|..+|++++..+ |. -..+..+=.+|.+.+.|.+-.+. ++++++..+ ..+.
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~p--k~~y 145 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNFP--KRAY 145 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCC--cccc
Confidence 6678889999999999999999998753 33 44455666677777777654443 333333221 2222
Q ss_pred hHHHHHHHHHHHHHcCChHHHHH-H-HHHHHHHHHHHcCCC-ChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446 286 LVLPLFSLGSLFIKEGKAVDAES-V-FSRILKIYTKVYGEN-DGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (510)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~-~-~~~al~~~~~~~~~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (510)
..|..+..+.......++... . .--|-.++++..... ... .+... ..-.++..+|++++|.+.+..-+.- .
T Consensus 146 --yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~--~ 220 (932)
T KOG2053|consen 146 --YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAE--K 220 (932)
T ss_pred --hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHH--h
Confidence 223334444444444444433 0 011111122222111 111 22221 1234567789999999998543322 1
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (510)
..+.+.. .-..-...+...+++.+-.++..+.+..
T Consensus 221 ---l~~~~~~---l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 221 ---LTSANLY---LENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred ---ccccchH---HHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 1122221 2234556677778888777776666553
No 238
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.027 Score=56.97 Aligned_cols=212 Identities=14% Similarity=0.083 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (510)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (510)
+|..+|......|...+|++.|-++ ++| ..|..........|.|++-+.++.-+.+..++.
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~------ 1166 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP------ 1166 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc------
Confidence 3666777777777777777766654 222 234455556666777777777666655443221
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (510)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (510)
..-..|...|.+.++..+-+++. .|+++.. ....|.-++..|.|+.|.-+|...-
T Consensus 1167 ---~id~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~vS-------- 1221 (1666)
T KOG0985|consen 1167 ---YIDSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNVS-------- 1221 (1666)
T ss_pred ---cchHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHhh--------
Confidence 11122334455555554433222 1333221 2345666667777766665554422
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--HH---------------hhCCCChhHHHHHHHHHHHHHh
Q 010446 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT--EK---------------YKGKEHPSFVTHLLNLAASYSR 427 (510)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~---------------~~~~~~~~~~~~~~~la~~~~~ 427 (510)
-+..||..+...|+|..|....++|-... ++ ..|-+-.-.+.-+..+...|..
T Consensus 1222 ----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1222 ----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence 22446666677777777776666543221 00 0111111112234445666677
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (510)
Q Consensus 428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (510)
.|-+++-+.+++.++.+ +. .....+..||.+|.+- ++++-.++
T Consensus 1292 rGyFeElIsl~Ea~LGL-------ER-AHMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGL-------ER-AHMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred cCcHHHHHHHHHhhhch-------hH-HHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 77777666666666553 11 1223445566655432 34444333
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.037 Score=48.82 Aligned_cols=165 Identities=11% Similarity=-0.053 Sum_probs=124.7
Q ss_pred HHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 010446 169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL 248 (510)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 248 (510)
+.+....|++.+|....++.+.-. |.-..++..--..++..|+.......+++.+... .++-|-.....
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~ 178 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVH 178 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHH
Confidence 445567889999888888876543 4443445555667888999999888888877543 34556566667
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (510)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (510)
..++..+...|-|++|++..++++++ ++....+....+.++...|++.++.++..+.-...+. .....
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~mla 246 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWMLA 246 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhHHH
Confidence 77888999999999999999999988 4556778888999999999999999998876554332 12223
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446 329 GMAMCSLAHAKCANGNAEEAVELYKKAL 356 (510)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (510)
...|-..|..+...+.++.|++.|.+-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 4445667888889999999999998754
No 240
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.65 E-value=0.0018 Score=54.97 Aligned_cols=102 Identities=24% Similarity=0.212 Sum_probs=82.3
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-----ChhH
Q 010446 340 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPSF 414 (510)
Q Consensus 340 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~ 414 (510)
.....+++|++.|.-|+-...-. +.++...+.++..+|.+|...|+.+....++++|+..+.+.+... ..+.
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~---~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIK---KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 34557889999999888776643 456667888999999999999998888888888888877665332 2344
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 415 VTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
..+.+.+|.++.+.|++++|..+|.+++..
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 568889999999999999999999999873
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.037 Score=53.65 Aligned_cols=130 Identities=9% Similarity=0.051 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHh-----hhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI-----VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
+..++..|..++......-+++-|+..|-+.... .+.++.-+.. -...+.+-..-|+|++|++.|..+-..
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~----~~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSK----EQQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhH----HHHhHhHhhhhcchhHhhhhhhccchh
Confidence 4446778888888887777788888777654322 1111111100 122344444558888888888654221
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446 233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312 (510)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 312 (510)
+.+ ...+...|+|-.-.++++.. ..+.++...-.++.++|..+..+..+++|.++|.+
T Consensus 764 ----------DLA------ielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 764 ----------DLA------IELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ----------hhh------HHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 12233444444333332211 01112333445666667666666667766666654
Q ss_pred H
Q 010446 313 I 313 (510)
Q Consensus 313 a 313 (510)
.
T Consensus 822 ~ 822 (1189)
T KOG2041|consen 822 C 822 (1189)
T ss_pred c
Confidence 4
No 242
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.64 E-value=0.0012 Score=56.11 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=80.3
Q ss_pred hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC-----hhHHHHHH
Q 010446 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-----ILLVTSLL 249 (510)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~ 249 (510)
...+++|+..|.-|+-.....+..+...+.++..+|++|...|+.+....++++|++.+.+.+.... ......++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4456777777777776666556666678888999999999999999888999999888877653322 24567888
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 250 GMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
.+|.++.+.|++++|..++.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999864
No 243
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.59 E-value=0.057 Score=53.70 Aligned_cols=281 Identities=13% Similarity=0.093 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-----hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-----IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (510)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (510)
...|..+++.+-+. ....+...+|.+|.. ..|.+.|+.+++.+......... .....+.+.
T Consensus 228 ~~~a~~~~~~~a~~------------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~--~~~~~a~~~ 293 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL------------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT--KGLPPAQYG 293 (552)
T ss_pred hhHHHHHHHHHHhh------------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh--hcCCccccH
Confidence 45677777765533 445566777777754 46899999999988762111000 001224678
Q ss_pred HHHHHHhhh-----cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcC
Q 010446 209 MGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 209 l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 280 (510)
+|.+|.... ++..|..+|.++-+. ....+.+.+|.++..-. ++..|.++|..|...
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 888888743 678899999888764 22456778888887765 578999999988754
Q ss_pred CCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKA 355 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 355 (510)
....+...++.+|.. .-+...|..++.++.+. +++. +...++..+.. .++++.+...+...
T Consensus 358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence 236778888888764 24678999999998874 2222 22333333322 27777776666655
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc---
Q 010446 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--- 428 (510)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--- 428 (510)
.+...+. .......+.......... .+...+...+.++.. .....+...+|.+|..-
T Consensus 424 a~~g~~~------~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~ 487 (552)
T KOG1550|consen 424 AELGYEV------AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGT 487 (552)
T ss_pred HHhhhhH------HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCC
Confidence 5442221 111111111111111111 133444555544432 23345667788888764
Q ss_pred -cCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhc-C--ChHHHHHHHHHHHH
Q 010446 429 -KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N--RDKEAEKLVLEALY 485 (510)
Q Consensus 429 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~al~ 485 (510)
.+++.|...|..+... . ....+++|..+..- | ....|..+|.++.+
T Consensus 488 ~~d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 488 GRDPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred CCChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 3589999999988762 1 57788999888752 1 15778888877765
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.0037 Score=50.06 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC------------hhHHHHHHHHHHHHHhhCChHHHHHHH
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG------------IEEVAILDIIALGYVYIGDLKFVQSLL 185 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 185 (510)
+..+...+......|+...++..+++++.+++..+-.+... .....++..++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34455566777788899999999999988765432111111 112345567788888999999999999
Q ss_pred HHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (510)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (510)
++++... |..-.++..+..+|...|+..+|+..|++......+.+|..
T Consensus 86 ~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 86 QRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 9998875 55555688899999999999999999999998887665544
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.0035 Score=50.15 Aligned_cols=117 Identities=21% Similarity=0.136 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC--------------hhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010446 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--------------PSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (510)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (510)
...|......|+.+.++..+++++.++...+-++. .....+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 33455556677888888888888877643321110 1233456678888999999999999999999
Q ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 010446 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLT 502 (510)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 502 (510)
.+ +|..-.++..+..+|...|+..+|...|++......+-+|... +..+..
T Consensus 90 ~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P-s~~~~~ 140 (146)
T PF03704_consen 90 AL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP-SPETRA 140 (146)
T ss_dssp HH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-----HHHHH
T ss_pred hc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc-CHHHHH
Confidence 85 5666778899999999999999999999999999998888653 444443
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0085 Score=48.54 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (510)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (510)
.+...++..+...|++++|+..++.++.. ..|......+-.+||.+...+|++++|+..+....
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~-------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--------- 153 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQ-------TKDENLKALAALRLARVQLQQKKADAALKTLDTIK--------- 153 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------
Confidence 34566788899999999999999998865 33444445566889999999999999998876532
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
++..........|.++...|+.++|+..|++++..
T Consensus 154 ~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 154 EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 22234445667899999999999999999999985
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.57 E-value=0.018 Score=53.78 Aligned_cols=148 Identities=10% Similarity=0.091 Sum_probs=93.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
.....++..++..-++...+||++ .|+.+.+|..|+.-. .....+|+.+++++++..+..-.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei----------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg------ 235 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI----------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLG------ 235 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhc------
Confidence 345567788888999999999988 777888887776532 23457888888887766533110
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (510)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (510)
........|..-+.. . ..+......+...+|.+..+.|+.++|++.++..++.. ..
T Consensus 236 -----~s~~~~~~g~~~e~~--~-----------~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~ 291 (539)
T PF04184_consen 236 -----KSQFLQHHGHFWEAW--H-----------RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PN 291 (539)
T ss_pred -----hhhhhhcccchhhhh--h-----------ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------Cc
Confidence 000011111111110 0 01122234455678888888888888888888877652 11
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (510)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (510)
.+...+..+|..++...+.|.++...+.+-
T Consensus 292 ~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 292 LDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 234567788888888888888887777653
No 248
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00099 Score=55.37 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (510)
+..+-..+..++....|..|+..|.+++.+ .|..+..+.+.+.++++..+++.+..-..+++++.
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~----- 74 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD----- 74 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc----------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-----
Confidence 344566778888888999999999999988 88888889999999999999999999999998876
Q ss_pred CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 010446 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (510)
|.....++.+|........|++|+..++++..+.+..
T Consensus 75 --~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 75 --PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred --hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 7778889999999999999999999999999887664
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.11 Score=50.56 Aligned_cols=32 Identities=13% Similarity=0.333 Sum_probs=23.1
Q ss_pred CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRV 229 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 229 (510)
++...-.++.++|..+..+..+++|.++|.+.
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445566778888888888888888887764
No 250
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00084 Score=55.78 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (510)
+..-|+.++....|+.|+..|.+++.+ +|..+..+.+.+.+|.+..+++.+..-.++++++ .+.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 556677888889999999999999875 4666778899999999999999999999999998 567
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (510)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (510)
.+...+.+|.+......|++|+..++++..+.+..
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999988765
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.03 Score=45.51 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 010446 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (510)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (510)
..-..+...++..+...|++++|+..++.++... .+......+-.+++.+...+|.+++|+..+....
T Consensus 86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------- 153 (207)
T COG2976 86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRLARVQLQQKKADAALKTLDTIK-------- 153 (207)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--------
Confidence 3344456678889999999999999999887543 2333344456789999999999999998876542
Q ss_pred CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
++......-...|.++...|+-++|...|+++++.
T Consensus 154 -~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 154 -EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred -cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 22334555667899999999999999999999986
No 252
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.41 E-value=0.011 Score=48.77 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC
Q 010446 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388 (510)
Q Consensus 309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (510)
-++.-++-++... ....+..++..+|..|.+.|+.++|.+.|.++.+.. ........++.++..+....|+
T Consensus 18 ~Le~elk~~~~n~--~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-------~~~~~~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 18 KLEAELKDAKSNL--GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-------TSPGHKIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHHhCC
Confidence 3334444444332 344577889999999999999999999999987763 3445566778899999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
+.....+..++-....... +..........-|..+...++|.+|...|-.+...
T Consensus 89 ~~~v~~~i~ka~~~~~~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEKGG--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 9999999999988876531 11222223334566777889999999999877653
No 253
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.005 Score=51.50 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC---Ch-------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010446 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---SI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (510)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (510)
..++..-|+-++..|+|.+|...|+.|+...+...-.. .| .....+.|++.|+...|+|-+++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999998876653222 22 234467899999999999999999999988
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (510)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (510)
.. +|....+|+..|......=+.++|..-+.+++++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 76 6778999999999999999999999999999985
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.34 E-value=0.00064 Score=38.97 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 489 (510)
++.+||.+|..+|++++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4688999999999999999999999988765
No 255
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.33 E-value=0.018 Score=47.47 Aligned_cols=111 Identities=15% Similarity=0.088 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (510)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (510)
......++..+|..|...|+.++|++.|.++.+.+ .........+.++..+....|++.....++.++-.....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~- 105 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK- 105 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence 34556788999999999999999999999987753 233456778888999999999999999999999988765
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (510)
+.+..........-|..+...++|.+|-..|-.+...
T Consensus 106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 3444444445556677778889999999988776543
No 256
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0043 Score=54.39 Aligned_cols=107 Identities=10% Similarity=0.036 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
....+.-+-.-|+-|+...+|..|...|.+.+..- ..+....+..|.|.|.+....|+|..|+.-..+++.+
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 34566767888999999999999999999998752 2344466788999999999999999999999999987
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
.|....+++.=|.++..+.++++|..+.+..+.+.
T Consensus 149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 67778899999999999999999999999887764
No 257
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0088 Score=50.12 Aligned_cols=110 Identities=10% Similarity=0.003 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH-hcCCCChhH-------HHHHHHHHHHHHhhCChHHHHHHHHH
Q 010446 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI-NAGNKGIEE-------VAILDIIALGYVYIGDLKFVQSLLDM 187 (510)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~ 187 (510)
..+..+...|..++..|+|.+|...|..|+..++.+. ...+..|+. ...+.+.+.|+...|+|-++++....
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 4556688899999999999999999999998887763 334444432 34578899999999999999998888
Q ss_pred HHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
.+... |....+|+..|......-+.++|..-+.+++++
T Consensus 256 iL~~~-------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 256 ILRHH-------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhcC-------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 77554 666777999999999999999999999999886
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.25 E-value=0.00093 Score=38.29 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (510)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (510)
++.+||.+|...|++++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999876543
No 259
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.16 E-value=0.0068 Score=48.54 Aligned_cols=93 Identities=10% Similarity=0.104 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q 010446 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210 (510)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 210 (510)
|+.|.+.++..... +|.+++.+++.|.++..+.++ .++..+++.++.-.+..-.-+|....+++.+|
T Consensus 7 FE~ark~aea~y~~----------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lG 76 (186)
T PF06552_consen 7 FEHARKKAEAAYAK----------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHh----------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34566666665555 788889999999888776555 34555555544433322222366677789999
Q ss_pred HHHHhhhc----HHHHHHHHHHHHHHHHHh
Q 010446 211 SMYSTLEN----YEKSMLVYQRVINVLESR 236 (510)
Q Consensus 211 ~~~~~~g~----~~~A~~~~~~al~~~~~~ 236 (510)
.+|...+. ..+|..+|++|...+++.
T Consensus 77 nA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 77 NAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 99887764 446666777766665543
No 260
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.16 E-value=0.27 Score=47.67 Aligned_cols=183 Identities=14% Similarity=0.160 Sum_probs=105.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHH------HHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446 207 LHMGSMYSTLENYEKSMLVYQRV------INVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (510)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (510)
..++..+...|+|.+|.+.|.+. ++++.. .-.+..++-+...|..++-..+.++--+......
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k- 704 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK- 704 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC-
Confidence 35677888899999999988753 333211 1234556667777777776666665555443332
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010446 281 TESADLVLPLFSLGSLFIKEGKAVDAESVF------SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (510)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (510)
.|. .-|.++...|+.++|+... +-++++.++. +......+..++..+.....+.-|.+.|.+
T Consensus 705 --ePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 705 --EPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred --CcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 222 2356677788888887653 3445554443 222234444555555556666666666655
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010446 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434 (510)
Q Consensus 355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 434 (510)
.-.. ..+..++...+++++|..+.++--+. ...++.-.|..+.+..++++|
T Consensus 773 ~gD~------------------ksiVqlHve~~~W~eAFalAe~hPe~-----------~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 773 MGDL------------------KSLVQLHVETQRWDEAFALAEKHPEF-----------KDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred hccH------------------HHHhhheeecccchHhHhhhhhCccc-----------cccccchHHHHhhhhhhHHHH
Confidence 3222 23456667778888887765542111 123455556666666666666
Q ss_pred HHHHHHH
Q 010446 435 ERLLRIC 441 (510)
Q Consensus 435 ~~~~~~a 441 (510)
.+.|.+|
T Consensus 824 qkAfhkA 830 (1081)
T KOG1538|consen 824 QKAFHKA 830 (1081)
T ss_pred HHHHHHh
Confidence 6666544
No 261
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.11 E-value=0.38 Score=48.55 Aligned_cols=191 Identities=16% Similarity=0.117 Sum_probs=107.3
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 010446 214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL 293 (510)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 293 (510)
...+++.+|+....+.++. +|....+...-|.++.++|+.++|..+++.. ... .+..-.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~-------~~~D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YGL-------KGTDDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-ccC-------CCCchHHHHHH
Confidence 3467888888888877764 3544455556678899999999999655433 221 12234567778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHH
Q 010446 294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373 (510)
Q Consensus 294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 373 (510)
-.+|.++|++++|..+|++++..+ |. -..+..+=.+|.+.+.|.+-.+. ++++++. -|..+..
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~----~pk~~yy- 146 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN----FPKRAYY- 146 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh----CCcccch-
Confidence 899999999999999999998752 33 33444455566666666543322 3333333 2333332
Q ss_pred HHHHHHHHHHHHcCChHHHHH-----HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446 374 NMRIDLAELLHIVGRGQEGRE-----LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (510)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (510)
.|..+..++......++... +.++..+..-+..| .-...++.. ..-.++..+|++++|.+.+..
T Consensus 147 -fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 147 -FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEII-LYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred -HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHH-HHHHHHHhcccHHHHHHHHHH
Confidence 22334444444444443333 11222111111111 111112221 223456778899999988843
No 262
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.42 Score=49.02 Aligned_cols=220 Identities=19% Similarity=0.119 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (510)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (510)
+.+.+|..+|.+....|...+|++.|-++ ++ |.. |........+.|.|++-..++.-+-+..++.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika--------dD-ps~---y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--- 1166 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA--------DD-PSN---YLEVIDVASRTGKYEDLVKYLLMARKKVREP--- 1166 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc--------CC-cHH---HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---
Confidence 44678999999999999999999988764 22 322 5666777888999999998888776543321
Q ss_pred CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (510)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (510)
. .-..+...|.+.++..+-+++. .|++. + -.-..|.-++..|.|+.|.-+|...-
T Consensus 1167 ---~---id~eLi~AyAkt~rl~elE~fi----------~gpN~---A-~i~~vGdrcf~~~~y~aAkl~y~~vS----- 1221 (1666)
T KOG0985|consen 1167 ---Y---IDSELIFAYAKTNRLTELEEFI----------AGPNV---A-NIQQVGDRCFEEKMYEAAKLLYSNVS----- 1221 (1666)
T ss_pred ---c---chHHHHHHHHHhchHHHHHHHh----------cCCCc---h-hHHHHhHHHhhhhhhHHHHHHHHHhh-----
Confidence 1 1112334444555544433322 12221 1 12234555555555555554443221
Q ss_pred HcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHhhc-------------cCCCCChHHHHHHHHHHHHHH
Q 010446 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV--IKDSN-------------YMSLDDSIMENMRIDLAELLH 384 (510)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~-------------~~~~~~~~~~~~~~~la~~~~ 384 (510)
-+..|+..+...|+|..|.+..++|-.. +++.. ..|-+-...+.-+-.+...|.
T Consensus 1222 -----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1222 -----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH
Confidence 2233444445555555555555443211 11000 001111112233456777888
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (510)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (510)
..|-+++-+.+++.++.+- ......+..||.+|.+- ++++-.++++
T Consensus 1291 ~rGyFeElIsl~Ea~LGLE--------RAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLE--------RAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hcCcHHHHHHHHHhhhchh--------HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 8888888888887776542 12234566778777653 4555444443
No 263
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.09 E-value=0.013 Score=42.58 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=61.5
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH
Q 010446 297 FIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 375 (510)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 375 (510)
....|++.+|.+.+.+..+......... ......+..++|.++...|++++|...+++++++.++. .|......+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~----~D~~~l~~a 83 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN----GDRRCLAYA 83 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----CCHHHHHHH
Confidence 4578999999999999999876653222 11356678889999999999999999999999999874 444444444
Q ss_pred HHHHHHH
Q 010446 376 RIDLAEL 382 (510)
Q Consensus 376 ~~~la~~ 382 (510)
+..+..+
T Consensus 84 l~~~~~l 90 (94)
T PF12862_consen 84 LSWLANL 90 (94)
T ss_pred HHHHHHH
Confidence 4444433
No 264
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.04 E-value=0.00055 Score=38.52 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHH
Q 010446 141 LQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182 (510)
Q Consensus 141 ~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 182 (510)
|++++++ .|+.+.+++.+|.+|...|++++|+
T Consensus 2 y~kAie~----------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL----------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH----------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6788887 9999999999999999999999986
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.04 E-value=0.0023 Score=38.66 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (510)
.++..+|..|...|++++|++.|+++++. .|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35778999999999999999999999997 5666777777764
No 266
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.01 Score=52.11 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (510)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (510)
........-..|..+++..+|..|+..|.++|.. ...+..-.+..|.+.+.+....|+|..|+.-..+++.+-
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~- 149 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK- 149 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3445556778899999999999999999999975 133344567788899999999999999999999988764
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
|....+++.-+.++..+.++.+|..+++..+.+.
T Consensus 150 ------P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 150 ------PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ------cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6677778999999999999999999999987764
No 267
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.03 E-value=0.013 Score=42.47 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=59.5
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH
Q 010446 383 LHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461 (510)
Q Consensus 383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 461 (510)
..+.|++.+|.+.+.+..+......... ......+..++|.++...|++++|+..+++++.+.++. .+......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 3568999999999999998876653222 12345677889999999999999999999999999886 23333344444
Q ss_pred HHHH
Q 010446 462 HLGI 465 (510)
Q Consensus 462 ~la~ 465 (510)
.+..
T Consensus 86 ~~~~ 89 (94)
T PF12862_consen 86 WLAN 89 (94)
T ss_pred HHHH
Confidence 4443
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.00 E-value=0.0025 Score=38.54 Aligned_cols=42 Identities=36% Similarity=0.327 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Q 010446 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (510)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (510)
.++..+|..|...|++++|++.|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35778999999999999999999999984 4555666676664
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.96 E-value=0.00099 Score=37.49 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 010446 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307 (510)
Q Consensus 268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 307 (510)
|++++++ +|....+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6778887 6888999999999999999999986
No 270
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.94 E-value=0.0027 Score=35.83 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
+.+++++|.+|..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999997
No 271
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.93 E-value=0.0025 Score=35.96 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
.++.++|.+|..+|++++|+.+|++++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999999875
No 272
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.29 Score=43.53 Aligned_cols=260 Identities=12% Similarity=0.061 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhhhhcCC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~ 197 (510)
+.+++.+..+.+.|+..+-..+.+..-..+.... .+..+.....+-..... -+..+.-+.++..++++.... .
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-----KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e-k 122 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-----KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE-K 122 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH-h
Confidence 4478888999999999988888777666655443 44555555555544433 445566777778877776541 1
Q ss_pred CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (510)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (510)
..-.....-..+...|...++|.+|+......+.-.++. .+.+....++..-..+|....+..+|...+..|......
T Consensus 123 RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana 200 (411)
T KOG1463|consen 123 RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA 200 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc
Confidence 111122334578889999999999999999988888776 344556667777788999999999999888887766554
Q ss_pred hcCCCCcchHHH-HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446 278 NRGTESADLVLP-LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (510)
Q Consensus 278 ~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (510)
... +|..-.. -..-|..+....+|.-|..||-+|.+-+... .++.....++-.+-.+-...+..++--.++..=.
T Consensus 201 iYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~ 276 (411)
T KOG1463|consen 201 IYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL 276 (411)
T ss_pred ccc--CHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence 442 2222222 2233556666789999999999999877554 2333444444444444555666666555443322
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 010446 357 RVIKDSNYMSLDDSIMENMRIDLAELLHI--VGRGQEGRELLEE 398 (510)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~ 398 (510)
.+.- .+++ ..+...+|..+.+ ..+|+.|+.-|..
T Consensus 277 ~l~y----~g~~----i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 277 ALKY----AGRD----IDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred HHhc----cCcc----hHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 2211 1222 2344556666654 2345555555544
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.28 Score=43.02 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
...+..+......|++.+|...+..++.. .++...+...++.+|...|+.+.|...+...-.-..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~----------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----- 199 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA----------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ----- 199 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh----------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-----
Confidence 33566778889999999999999999988 666788899999999999999999998876322110
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
......+......+.+.....+....-.++ . .+|.....-+.+|..+...|+.++|.+.+-..+..
T Consensus 200 -~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 200 -DKAAHGLQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred -hhHHHHHHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 011110111112222222222222222211 1 23555677788999999999999999887666554
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.77 E-value=0.0039 Score=35.08 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
.++..+|.++..+|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567899999999999999999999999875
No 275
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.74 E-value=0.032 Score=44.81 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC----CHHHHHHHHHHHH
Q 010446 200 PLLDAILLHMGSMYSTLENY---EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG----RAKKAVEIYHRVI 272 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al 272 (510)
|..+..+++.|..+..+.++ .++..+++.++..++..+.- +|....+++++|.+|...+ +..+|..+|++|.
T Consensus 22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 44456678888887777655 34666666666655543221 3667788999999998764 4556777777777
Q ss_pred HHHHH
Q 010446 273 TILEL 277 (510)
Q Consensus 273 ~~~~~ 277 (510)
+.+++
T Consensus 101 ~~Fqk 105 (186)
T PF06552_consen 101 EYFQK 105 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 276
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.70 E-value=0.0052 Score=34.56 Aligned_cols=29 Identities=10% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
.++..+|.++...|++++|+.++++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999987
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.69 E-value=0.63 Score=46.46 Aligned_cols=252 Identities=17% Similarity=0.070 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 010446 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST-----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (510)
Q Consensus 178 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (510)
...|..+++.+.... .......+|.+|.. ..+.+.|+.+++.+.+.+.+... .....+.+.+|
T Consensus 228 ~~~a~~~~~~~a~~g---------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~---~~~~~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT---KGLPPAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhhc---------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh---hcCCccccHHH
Confidence 456777776654432 12234666666654 36899999999999873211100 11233577888
Q ss_pred HHHhhcC-----CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHcCCC
Q 010446 253 KVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGEN 324 (510)
Q Consensus 253 ~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~ 324 (510)
.+|.... +++.|..++.++-+. ....+.+.+|.++.... +...|..+|..|... .
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G 358 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------G 358 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------C
Confidence 8888743 678899999988765 23467788898887665 567899999888763 2
Q ss_pred ChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 010446 325 DGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEEC 399 (510)
Q Consensus 325 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 399 (510)
+ ..++..++.+|.. .-+...|..+++++.+.. ++. +...++..+... ++++.+.-.+...
T Consensus 359 ~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g---------~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 359 H---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG---------NPS---AAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred C---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc---------Chh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence 2 3566777777764 347889999999988762 111 113333333322 7777766665554
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhc----C
Q 010446 400 LLITEKYKGKEHPSFVTHLLNLAASYSRS----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----N 471 (510)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g 471 (510)
.+..-+. .......+.......... .+...+...+.++.. .....+...+|.+|..- .
T Consensus 424 a~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 424 AELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred HHhhhhH----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCC
Confidence 4432221 011111111111111111 244555555555443 12234557777777654 3
Q ss_pred ChHHHHHHHHHHHHHH
Q 010446 472 RDKEAEKLVLEALYIR 487 (510)
Q Consensus 472 ~~~~A~~~~~~al~~~ 487 (510)
+++.|...|..+..-.
T Consensus 490 d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG 505 (552)
T ss_pred ChHHHHHHHHHHHHhh
Confidence 5778888887776543
No 278
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.67 E-value=0.038 Score=49.64 Aligned_cols=134 Identities=11% Similarity=0.152 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSL 367 (510)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (510)
+|..+.....+.+..+.|...|.+|++ .......+|...|.+-.. .++.+.|...|+.+++.+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS------ 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------
Confidence 345555666666778999999999974 222334567777888666 56666699999999988532
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (510)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (510)
.. ..+......+...|+.+.|..+|++++.... .......+|......-...|+.+......+++.+..
T Consensus 69 -~~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~-----~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 69 -DP---DFWLEYLDFLIKLNDINNARALFERAISSLP-----KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp --H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS-----CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred -CH---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 32 3345566888899999999999999876421 111134577777888888899999999988888764
No 279
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.71 Score=44.85 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
.+++.+...++..+|..++++|...+..... ...+...+.....++.||....+.+.|.++++++.+..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------- 424 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------- 424 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccc----hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence 3778888899999999999999998876432 22244557788999999999999999999999987654
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (510)
|...-....+-......|.-++|+...........
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 22222234455566677888999998887776543
No 280
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.31 Score=47.20 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=109.5
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010446 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (510)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (510)
.++..+...|++.+|.++|.+.-.-.+.+. -....-.+..+.-+...|..++-..+.++-.+..... +.|..
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlE---myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePka-- 708 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALE---MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPKA-- 708 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHH---HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcHH--
Confidence 467777788999999998876322111100 0000113556666777777777666666555544433 22322
Q ss_pred HHHHHHHHHhhcCCHHHHHHHH------HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIY------HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (510)
-|..+...|+.++|+... +-++++.++.. ......+..++..+.....+.-|.+.|.+.-++
T Consensus 709 ----AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---- 776 (1081)
T KOG1538|consen 709 ----AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---- 776 (1081)
T ss_pred ----HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence 366778889999888753 34455544431 122344555566666666666666666544221
Q ss_pred cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (510)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (510)
..+..++...+++++|..+.++--+. ...++...|+.+.+..++++|.+.|.+|-
T Consensus 777 ------------ksiVqlHve~~~W~eAFalAe~hPe~-------------~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 777 ------------KSLVQLHVETQRWDEAFALAEKHPEF-------------KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ------------HHHhhheeecccchHhHhhhhhCccc-------------cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 22345567788888887766553222 23345667777777778888877776653
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.58 E-value=0.0057 Score=34.41 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010446 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (510)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 488 (510)
.++..+|.+|..+|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5688999999999999999999999999863
No 282
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.8 Score=43.69 Aligned_cols=227 Identities=12% Similarity=0.042 Sum_probs=135.9
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (510)
.|..+..+..-+..+...|+.+.|+..++......- ..-..-.++.+|.++..+.+|..|-..+....+...
T Consensus 263 ~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~-----kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd--- 334 (546)
T KOG3783|consen 263 YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRM-----KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD--- 334 (546)
T ss_pred CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh---
Confidence 445555666777788888888888888877665211 122344578899999999999999999888766521
Q ss_pred CCCChhHHHHHHHHH-HHH--------hhcCCHHHHHHHHHHHHHHHHHhcCCCCcc--------------------h--
Q 010446 238 GKTSILLVTSLLGMA-KVL--------GSIGRAKKAVEIYHRVITILELNRGTESAD--------------------L-- 286 (510)
Q Consensus 238 ~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------------~-- 286 (510)
-..+ .|..++ .++ ...|+-++|..+.+...++..... .+.|. .
T Consensus 335 ----WS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~-K~~P~E~f~~RKverf~~~~~~~~~~~l 408 (546)
T KOG3783|consen 335 ----WSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAG-KNLPLEKFIVRKVERFVKRGPLNASILL 408 (546)
T ss_pred ----hhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhcc-ccCchhHHHHHHHHHHhccccccccccc
Confidence 1111 122222 222 224566666666666555544311 11110 0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010446 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (510)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (510)
+..+..++.++..-.+ -+..-..++..-.+..--.+..+..--+..+|.++..+|+...|..+|..+.+..... .
T Consensus 409 a~P~~El~Y~Wngf~~--~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~---~ 483 (546)
T KOG3783|consen 409 ASPYYELAYFWNGFSR--MSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR---T 483 (546)
T ss_pred cchHHHHHHHHhhccc--CChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---c
Confidence 0012233322221111 1111111222222211112333455567788999999999999999999988664432 4
Q ss_pred CCChHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q 010446 367 LDDSIMENMRIDLAELLHIVGR-GQEGRELLEECLLIT 403 (510)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 403 (510)
.++-....+++.+|.++..+|. ..++..++.+|-+..
T Consensus 484 ~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 484 EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 5566667788999999999998 999999999987653
No 283
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.1 Score=45.61 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=89.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010446 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413 (510)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (510)
.-+.-....|++.+|...+..++....+ . ..+...++.+|...|+.+.|...+...-.-. ...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~-------~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~~ 201 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPE-------N---SEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QDK 201 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcc-------c---chHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hhh
Confidence 3455677889999999999999988432 2 3345779999999999999998876521111 001
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010446 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (510)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 493 (510)
....+......+.+.....+....-++.- .+|+.......+|..+...|+.++|.+.+-..++.-. .+.+
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~a---------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-~~~d 271 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLA---------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-GFED 271 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccC
Confidence 11111111122222222222222222221 2566667778999999999999999887766655322 2233
Q ss_pred CCcchhHHHHhhccCC
Q 010446 494 DSLPGKLLTVWSLFRP 509 (510)
Q Consensus 494 ~~~~~~~~~~~~l~~~ 509 (510)
+.....+..+.++++|
T Consensus 272 ~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 272 GEARKTLLELFEAFGP 287 (304)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 3345556666666665
No 284
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.46 E-value=0.072 Score=36.12 Aligned_cols=70 Identities=9% Similarity=0.067 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (510)
..-++.+..++...+..+|+..++++++. ..+.++.-.++..+..+|...|+|++++.+...-+.+...+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k-------~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEK-------ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhh-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777788999999999999999987 44467778888899999999999999999987777766554
No 285
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.44 E-value=0.096 Score=47.09 Aligned_cols=134 Identities=10% Similarity=0.096 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEND 325 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (510)
+|..+.....+.+..+.|...|.+|++ .......+|...|.+-.. .++.+.|...|+.+++.+. .+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CC
Confidence 344555666666678899999999863 233445778888888666 5666669999999998651 22
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (510)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (510)
+ ..+......+...|+.+.|..+|++++... +.......+|......-...|+.+....+.+++.+..
T Consensus 70 ~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 70 P---DFWLEYLDFLIKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3 344445577888999999999999998652 1112134466777888888999999999888887764
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.40 E-value=0.01 Score=33.33 Aligned_cols=30 Identities=13% Similarity=0.419 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (510)
.++..+|.+|...|++++|..++++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578899999999999999999999999874
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.15 E-value=1.2 Score=41.80 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHH
Q 010446 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK-IYTKV 320 (510)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~ 320 (510)
...+..+...+.+....|+++.|...+.++...... .......+....+.+....|+..+|+..++..+. .....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 466788999999999999999999999887764211 1122455667778999999999999999988887 22221
Q ss_pred c-------------------------CCCChHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446 321 Y-------------------------GENDGRVGMAMCSLAHAKCAN------GNAEEAVELYKKALRVIKDSNYMSLDD 369 (510)
Q Consensus 321 ~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (510)
. .......+.++..+|...... +..+++...|.++....+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-------- 290 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-------- 290 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh--------
Confidence 0 011223556677777777777 8888999999999887332
Q ss_pred hHHHHHHHHHHHHHHH
Q 010446 370 SIMENMRIDLAELLHI 385 (510)
Q Consensus 370 ~~~~~~~~~la~~~~~ 385 (510)
....+..+|..+..
T Consensus 291 --~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 291 --WEKAWHSWALFNDK 304 (352)
T ss_pred --HHHHHHHHHHHHHH
Confidence 23455666666544
No 288
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.14 E-value=0.02 Score=32.87 Aligned_cols=36 Identities=19% Similarity=-0.065 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010446 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (510)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 493 (510)
.++..||.+-...++|++|..-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999999999998765
No 289
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.75 E-value=0.28 Score=33.34 Aligned_cols=66 Identities=18% Similarity=0.083 Sum_probs=54.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010446 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (510)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (510)
.-|.-++...+.++|+..++++++.. .+++....++..+..+|...|++.+.+.+..+=+.+..+.
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444567889999999999999873 4566777888999999999999999999988888877665
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.71 E-value=0.83 Score=36.58 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCCh
Q 010446 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454 (510)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (510)
...+.+....|+...|+..|.++-.-. ..|... .+...-+.++...|-|++-....+. .-++.+|
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-------La~d~n~ 164 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-------LAGDGNP 164 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHHhhh-------ccCCCCh
Confidence 445566666666666666665543210 111111 1222334445555555544433221 1234445
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
....+...||..-++.|++.+|..+|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555566666666666666666655443
No 291
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.63 E-value=1.5 Score=41.00 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh----c-----C------------CCChhHHHHHHHHHHHHhh
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR----Y-----G------------KTSILLVTSLLGMAKVLGS 257 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~-----~------------~~~~~~~~~~~~la~~~~~ 257 (510)
.|....++..++.++..+|+...|.++.++|+-.++.. + . ..+.....++........+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 36667779999999999999999999999998776633 2 0 1123456677788888999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 010446 258 IGRAKKAVEIYHRVITILELNRGTE-SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA 336 (510)
Q Consensus 258 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 336 (510)
.|-+..|.++.+-.+.+ ++. +| ..++..+-....+.++++--+++++.......+. .........+.++
T Consensus 116 RG~~rTAlE~~KlLlsL-----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~a 185 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL-----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIA 185 (360)
T ss_pred cCcHHHHHHHHHHHHhc-----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHH
Confidence 99999999999988877 222 22 3344445555567788876666666544421100 0001123345567
Q ss_pred HHHHHCCCH---------------HHHHHHHHHHHHHHH
Q 010446 337 HAKCANGNA---------------EEAVELYKKALRVIK 360 (510)
Q Consensus 337 ~~~~~~g~~---------------~~A~~~~~~al~~~~ 360 (510)
.++...++. ++|...+.+|+..+.
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 777777777 899999999998754
No 292
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.60 E-value=1.8 Score=40.42 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=105.9
Q ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------ccCCCCChHHHHHHHHHHHHHH
Q 010446 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLH 384 (510)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~ 384 (510)
.+|..+.++..++.++..+|+.+.|.+++++|+-.++.. ....+.+.....++......+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 357778899999999999999999999999998666532 0112233444556677888899
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHH
Q 010446 385 IVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463 (510)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 463 (510)
+.|-+..|.++.+-.+.+. +. +|. .++..+=....+.++++--++.++.......+. .........+..
T Consensus 115 ~RG~~rTAlE~~KlLlsLd-----p~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLD-----PDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred hcCcHHHHHHHHHHHHhcC-----CCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 9999999999988777653 22 332 334444455567788877777776554421100 000112334677
Q ss_pred HHHHHhcCCh---------------HHHHHHHHHHHHHHHH
Q 010446 464 GITLYHLNRD---------------KEAEKLVLEALYIREI 489 (510)
Q Consensus 464 a~~~~~~g~~---------------~~A~~~~~~al~~~~~ 489 (510)
+.++...++. ++|...+++|+..+..
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 7888888888 8999999999876543
No 293
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.59 E-value=0.026 Score=52.45 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (510)
+-+.+..++...+|+.|+..|.+++++ +|..+..+.+.+..+...+++..|+.-+.++++.. |
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l----------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-------P 69 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL----------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-------P 69 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc----------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-------c
Confidence 445777888999999999999999998 88888888888999999999999999998888654 8
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
....+|+.-|.+....+++.+|...|+....+
T Consensus 70 ~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 70 TYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred hhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 88888999999999999999999999888765
No 294
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.48 E-value=1.9 Score=39.14 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=119.4
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (510)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (510)
....+++..|...+.++-.. ........++.+|... .+..+|..+|+.+.+ .....
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~ 110 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAE 110 (292)
T ss_pred ccccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHH
Confidence 34567788888888777552 1125666777777653 457778888885543 22345
Q ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHH
Q 010446 331 AMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------RGQEGRELLEEC 399 (510)
Q Consensus 331 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a 399 (510)
+..++|.+|.. ..+..+|..+|+++... +..+. ..+...++..|..-+ +...|...|.++
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 67778988887 44899999999999876 22221 223466777776642 223677777776
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC----
Q 010446 400 LLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---- 471 (510)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---- 471 (510)
.... ...+...+|.+|.. ..++.+|..+|.++.+. .+ ......++ ++...|
T Consensus 182 a~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 182 AELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred HHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcCCCch
Confidence 5532 34567788888865 34889999999999872 22 45667777 666665
Q ss_pred -----------ChHHHHHHHHHHHH
Q 010446 472 -----------RDKEAEKLVLEALY 485 (510)
Q Consensus 472 -----------~~~~A~~~~~~al~ 485 (510)
+...|..++..+..
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHH
Confidence 66677777766654
No 295
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.47 E-value=0.05 Score=31.27 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Q 010446 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (510)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (510)
.++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999999998876543
No 296
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.42 E-value=0.043 Score=51.10 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=82.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (510)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (510)
-+-+.....-+.|+.|+..|.+|+++ +|..+..+.+.+..+...+++..|+.-+.++++. +|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34566777889999999999999998 6667777888889999999999999999999984 5888
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 329 GMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
..+|..-|..+...+++.+|...|+....+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 889999999999999999999999888776
No 297
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.36 E-value=2.7 Score=40.25 Aligned_cols=62 Identities=5% Similarity=-0.121 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHh
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI 191 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 191 (510)
..+...++.+..+ -+++..+.|++.+.. -|..+.+|.......+...+|+..+.+|.+++.-
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~----------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNV----------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhcc----------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344455555444 889999999988765 6666777877788888899999999999887653
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.28 E-value=2.2 Score=38.71 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=108.7
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----hCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
....+++..|...+..+-.. ..+.....++.+|.. ..+..+|..+++.+... ...
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~------------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------g~~ 109 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL------------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------GLA 109 (292)
T ss_pred ccccccHHHHHHHHHHhhhc------------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---------ccH
Confidence 34566777777777766531 112455666666654 34677888888854321 223
Q ss_pred HHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-------CHHHHHHHHHHHH
Q 010446 204 AILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-------RAKKAVEIYHRVI 272 (510)
Q Consensus 204 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al 272 (510)
...+.+|.+|.. ..++.+|..+|+++.+.- ++.-..+...++..|..-+ +...|...|.++-
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 346778888877 458999999999998752 2221344667777776642 2236777777776
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC
Q 010446 273 TILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (510)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (510)
... ...+...+|.+|.. ..++.+|..+|.++-+. .+ ......++ ++...|
T Consensus 183 ~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 183 ELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred Hhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 542 45778888988855 34789999999999874 22 45667777 555555
No 299
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.22 E-value=1.9 Score=37.52 Aligned_cols=185 Identities=11% Similarity=0.070 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhhhhcCCC
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
.++.+++..-+.|+|++.+.+..+++... ......-.+.++.+|- ..|....+...+......... ..
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~---------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~--~~ 71 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN---------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN--KG 71 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS---------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC---------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc--cc
Confidence 35668888899999999999999988761 2222333444555552 345555555555444333322 11
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC--Ch-hHHHHHHHHHHHHhhc-----C-----CHHHHH
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT--SI-LLVTSLLGMAKVLGSI-----G-----RAKKAV 265 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~-~~~~~~~~la~~~~~~-----g-----~~~~A~ 265 (510)
.+.... +..-| +..=-++=...+..++.+....+-+. ++ ..+-.+...|..|... | -.++|.
T Consensus 72 ~~~~~~----~i~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 72 NEKQVK----LIKDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp THHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hhHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 121111 11111 11111223444555555554432221 12 2222233344444322 2 237899
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHH
Q 010446 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKV 320 (510)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~ 320 (510)
..|++|+++.....++.+|.......+.+..|+ ..|+.++|....+++++.....
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999777888877777777776664 5899999999999988765443
No 300
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=2.7 Score=38.99 Aligned_cols=198 Identities=14% Similarity=0.017 Sum_probs=132.9
Q ss_pred CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (510)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (510)
.+-....+....-+.++....++..|...+.+..-...+ +........++..++.++...+..-.+..+.-.++....
T Consensus 267 ~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~s 344 (482)
T KOG4322|consen 267 GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRS 344 (482)
T ss_pred chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 343455667777899999999999999998887654432 223345566777888888888888888888888777665
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHHHHcCChHHHHHH
Q 010446 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD---SIMENMRIDLAELLHIVGRGQEGREL 395 (510)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (510)
+.. .+...+.+-.+++..+...|..+.|...+..++....-.++..... ...+.++..-+..+ ...+.+.+..+
T Consensus 345 ey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~ 421 (482)
T KOG4322|consen 345 EYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRY 421 (482)
T ss_pred Hhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHH
Confidence 541 2233445566788889999999999999999987765431111110 00111111111112 45667888888
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH---HHHHHHHHHHH
Q 010446 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV---EAERLLRICLD 443 (510)
Q Consensus 396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 443 (510)
++++-.+..+. .-+.....+.+.++..|...|+.+ ++...|+++..
T Consensus 422 L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 422 LDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 88888887776 246667788889999999999865 45555666554
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.05 E-value=0.33 Score=38.53 Aligned_cols=91 Identities=15% Similarity=0.022 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
+....+..+++....-...++.+++..++...-.+ .|..+..-..-|..++..|+|.+|+.+++.+....
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 34455666788888888899999999988876655 88888888999999999999999999999865432
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhhhcHH
Q 010446 193 DSLKDDEPLLDAILLHMGSMYSTLENYE 220 (510)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (510)
+....+--.++.|+..+|+.+
T Consensus 75 -------~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 75 -------PGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -------CCChHHHHHHHHHHHHcCChH
Confidence 322323345677777776653
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.01 E-value=0.042 Score=30.41 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446 459 PMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (510)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (510)
+++.+|.++...|++++|...|++.++.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57899999999999999999999998754
No 303
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.93 E-value=0.017 Score=51.05 Aligned_cols=96 Identities=14% Similarity=0.038 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
..-..+...+..|.+++|++.+..++.+ .|..+..+...+.++..+++...|++-+..++.+.
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~l----------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein------- 178 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIEL----------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN------- 178 (377)
T ss_pred HHHHHHHHHhcCcchhhhhccccccccc----------CCchhhhcccccceeeeccCCchhhhhhhhhhccC-------
Confidence 4445667788999999999999999988 88899999999999999999999999999988775
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
++.+.-|-..|.....+|++.+|...+..+.++
T Consensus 179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 444444566677778899999999999998875
No 304
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.81 E-value=2.6 Score=37.08 Aligned_cols=188 Identities=15% Similarity=0.069 Sum_probs=111.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC---C-------hHHHHHHHHHHHHHHHCC--------------CHH
Q 010446 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN---D-------GRVGMAMCSLAHAKCANG--------------NAE 346 (510)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~~ 346 (510)
+.+..++...|+..+|+.-+++=+..++...++. . ...+.-+..+|++..... -+.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~ 93 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ 93 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence 4567889999999999999999888887775541 1 112233444555544432 123
Q ss_pred HHHHHHHHHHHHHHhhccCCCC-------------------ChHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHh
Q 010446 347 EAVELYKKALRVIKDSNYMSLD-------------------DSIMENMRIDLAEL-LHIVGRGQEGRELLEECLLITEKY 406 (510)
Q Consensus 347 ~A~~~~~~al~~~~~~~~~~~~-------------------~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~ 406 (510)
.|-.+...--+...... ..|+ .+.-... ..+... ..........++++++|+..+...
T Consensus 94 ~AA~~~~~Rr~~a~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 94 IAAKHAVERRKLAEAIP-PDPDSSPASSVVPSFYGYDTYSLPPSPHEE-YPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHhcc-CCCCCCchhhccchhhcccccccCchhHHH-HHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 33333332223333220 0011 0000000 001110 111223346688888888887765
Q ss_pred hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010446 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (510)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 484 (510)
. .......+...+|.-|...|++++|..+|+.+...+++- .-..-...++..+..|+...|+.+..+.+.-+.+
T Consensus 172 ~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 172 G--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred c--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3 234455667789999999999999999999997766542 2234455677889999999999888777655443
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.64 E-value=0.081 Score=29.21 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 205 ILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
+++.+|.++...|++++|...|++.++.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57899999999999999999999998753
No 306
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.44 E-value=4 Score=37.59 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=93.5
Q ss_pred CCcchHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHH
Q 010446 282 ESADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349 (510)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 349 (510)
.+|....++..+....-..-. .+.-+.++++|++. +|.....+..+-....+..+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 356667777666654433322 23445556666653 2333333333334445666777777
Q ss_pred HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC----------ChhHHHHHH
Q 010446 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLL 419 (510)
Q Consensus 350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~ 419 (510)
+-+++++.. .+....+...|...-..-...-.++.....|.+++.......... ......++.
T Consensus 86 ~~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 86 KKWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred HHHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 778887776 344555544444444444445568899999999998776554322 234456677
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446 420 NLAASYSRSKNFVEAERLLRICLDIM 445 (510)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~ 445 (510)
.+.......|..+.|+..++-.+++.
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 78888899999999999999998863
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.17 E-value=2.8 Score=34.81 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (510)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (510)
.-++|...|.++- +......+.....+|..|. ..+.++|+.++.+++++... +.......+..|+.++
T Consensus 121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHH
Confidence 3455666555442 2233355677778887776 67899999999999988533 3344567888899999
Q ss_pred HHcCChHHHH
Q 010446 298 IKEGKAVDAE 307 (510)
Q Consensus 298 ~~~g~~~~A~ 307 (510)
...|+++.|-
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999998874
No 308
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.16 E-value=5.6 Score=38.17 Aligned_cols=179 Identities=13% Similarity=0.053 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcH-------HHHHHHHHHHHHHHHH
Q 010446 163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENY-------EKSMLVYQRVINVLES 235 (510)
Q Consensus 163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~ 235 (510)
.....+|..++..|||+-|...|+.+.+-+.. .......+.++...|.+....+.. ++...+++.|...+.+
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 34678999999999999999999998876532 122223455555666666666533 3777888888887766
Q ss_pred hcC---CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHH--HHcCChHHHH
Q 010446 236 RYG---KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD---LVLPLFSLGSLF--IKEGKAVDAE 307 (510)
Q Consensus 236 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A~ 307 (510)
... .......++....+.++...|.+.+|...+-+.....-. +... .+..+-.+|.+| ..........
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~~ 363 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPGL 363 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCccc
Confidence 211 111244567777888888999998888777666654210 1111 344455556555 1110000000
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (510)
Q Consensus 308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (510)
.. ....+.-+..-|.-|...|+...|..+|.+++..+..
T Consensus 364 ~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 364 TR---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred hh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00 1112233344467899999999999999999998764
No 309
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=5.8 Score=38.20 Aligned_cols=254 Identities=17% Similarity=0.111 Sum_probs=145.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 010446 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (510)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (510)
....+...++++. +...+++....... |..+.....-+..+...|+.+.|+..++.+++..-+ .-...
T Consensus 237 ~~~~~~~~p~~d~--~~~~~~Ll~~~~~~----p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l 304 (546)
T KOG3783|consen 237 FISFVLGTPNPDG--EECEKALKKYRKRY----PKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSL 304 (546)
T ss_pred HHHHHcCCCCccH--HHHHHHhHHHHHhC----CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHH
Confidence 3334444455554 44444444444432 223444566788888888888889998888772211 11245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH-HHH--------HHCCCHHHHHHHHHHHHHHH
Q 010446 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAK--------CANGNAEEAVELYKKALRVI 359 (510)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~~~ 359 (510)
.+..+|.++..+.+|..|-..+....+.. ...-..|..++ -++ ...|+-++|..+++......
T Consensus 305 ~~fE~aw~~v~~~~~~~aad~~~~L~des--------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~ 376 (546)
T KOG3783|consen 305 MVFERAWLSVGQHQYSRAADSFDLLRDES--------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELL 376 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhh--------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHH
Confidence 67788999999999999998888776642 11112222233 222 22456777777766666555
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCC---------------------hHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010446 360 KDSNYMSLDDSIMENMRIDLAELLHIVGR---------------------GQEGRELLEECLLITEKYKGKEHPSFVTHL 418 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 418 (510)
... +.+.|.-. ....-+.-+...+. -.-+..-.+++........-.+..+....+
T Consensus 377 ~~a---~K~~P~E~-f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~ 452 (546)
T KOG3783|consen 377 ANA---GKNLPLEK-FIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKY 452 (546)
T ss_pred Hhc---cccCchhH-HHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHH
Confidence 442 11111110 00112222222221 000000011111111111111233444566
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Q 010446 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR 487 (510)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 487 (510)
..+|.++...|+...|..+|...++- ......++.-...+++.+|..|..+|. ..++..++.+|.+..
T Consensus 453 lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 453 LLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 77899999999999999999988864 222234555667789999999999998 999999999997755
No 310
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.04 E-value=0.048 Score=48.41 Aligned_cols=89 Identities=20% Similarity=0.137 Sum_probs=77.3
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 010446 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC 333 (510)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 333 (510)
-....|.+++|++++..++++ +|..+..+...+.++..+++...|+.-+..++++ +++.+..|-
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 344578899999999999987 6778888999999999999999999999999985 466666777
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 334 SLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
..+.....+|++++|...+..+.++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 7788888999999999999999877
No 311
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.88 E-value=0.84 Score=32.61 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (510)
+|....+.+.++..+...|++++|+..+-.++....
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 888889999999999999999999999887776543
No 312
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.77 E-value=2 Score=31.69 Aligned_cols=100 Identities=11% Similarity=0.100 Sum_probs=55.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh----CChHHHHHHHHHHHHhhhhcCCCc
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
.+..++..|++-+|+++.+..+.. ..++......+..-|.++..+ .|.+-=..++.-+++-......-.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~-------h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR-------HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH-------ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 467789999999999999988765 222333335566667776543 333333334444444333322333
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVI 230 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 230 (510)
|.-+..++.+|.-+-....|+++..-.++++
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 5555556666655444444444444444444
No 313
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.70 E-value=6.9 Score=37.59 Aligned_cols=178 Identities=13% Similarity=0.017 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHH
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-------VDAESVFSRILKIYTK 319 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~ 319 (510)
....+|+.++..|+|+-|...|+.+.+-+.... .....+.+....|.+....+.. ++...+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 466799999999999999999998887654311 1233445555666666666543 4778888988888877
Q ss_pred HcC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhhccCCCCChHHHHHHHHHHHHH--HHcCChHHH
Q 010446 320 VYG---ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI--KDSNYMSLDDSIMENMRIDLAELL--HIVGRGQEG 392 (510)
Q Consensus 320 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A 392 (510)
... ........+....+.++...|.+.+|...+-+..... ... .....+.++..+|.++ ........-
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l-----~~~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL-----RPFGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh-----hhHhhHHHHHHHHHhhcccccCCCCcc
Confidence 311 1122455566777888888999888877766665542 111 0000233444555555 111000000
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 010446 393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446 (510)
Q Consensus 393 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (510)
..- ....+.-+..-|.-|...|+...|..+|.+++.++.
T Consensus 363 ~~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 363 LTR---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred chh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000 111222233447788999999999999999999875
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.56 E-value=2 Score=34.21 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (510)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (510)
......+..+..+-...++.+++...+.-..-+ .|.....-..-|.++...|++.+|+..++...+
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------ 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence 345666777788888889999998887655443 566777778889999999999999999998654
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHH
Q 010446 322 GENDGRVGMAMCSLAHAKCANGNAE 346 (510)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~ 346 (510)
..+....+--.++.++..+|+.+
T Consensus 73 --~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 --RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --cCCCChHHHHHHHHHHHHcCChH
Confidence 33444445555777888887764
No 315
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.40 E-value=19 Score=41.63 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (510)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (510)
...++.+|...|.+....|+++.|..++-+|.+.. ...+....|..+...|+...|+..+++.+....
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR------------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 45688999999999999999999999888877652 134557899999999999999999999987654
Q ss_pred HhhCCC---Ch------hHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHH
Q 010446 405 KYKGKE---HP------SFVTHLLNLAASYSRSKNF--VEAERLLRICLDIMT 446 (510)
Q Consensus 405 ~~~~~~---~~------~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~ 446 (510)
...... .| ....+...++......|++ .+-+.+|+.+.++..
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 321111 01 1112344455555556663 344667777777543
No 316
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=4.6 Score=36.09 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCH
Q 010446 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (510)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (510)
+-+++.++-.++..| ......++.+.|..|.+.|+-+.|++.+.+..+-.-... ...++......+|..|.. .
T Consensus 85 ~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D---~ 157 (393)
T KOG0687|consen 85 KELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLD---H 157 (393)
T ss_pred HHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhcc---H
Confidence 334444444444332 345677889999999999999999999988776443331 234455666777777754 3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (510)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (510)
+--.+..+++-.+.++ |.|..........-|.......++.+|-.+|-.++..+.
T Consensus 158 ~lV~~~iekak~liE~----GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 158 DLVTESIEKAKSLIEE----GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHHHHHHHh----CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 4444445555555554 666666555555567777778899999998887776543
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.26 E-value=3 Score=34.70 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=57.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 010446 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA 336 (510)
Q Consensus 257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 336 (510)
..-.-++|...|.++ .+......+.....||..|. ..+.++|+.++.+++++... ++......+..|+
T Consensus 118 sr~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLa 185 (203)
T PF11207_consen 118 SRFGDQEALRRFLQL-------EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLA 185 (203)
T ss_pred hccCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHH
Confidence 343345555554443 23344566788888988777 67899999999999998532 3234567788899
Q ss_pred HHHHHCCCHHHHH
Q 010446 337 HAKCANGNAEEAV 349 (510)
Q Consensus 337 ~~~~~~g~~~~A~ 349 (510)
.++..+|+++.|-
T Consensus 186 s~~~~~~~~e~AY 198 (203)
T PF11207_consen 186 SIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHhcchhhhh
Confidence 9999999999875
No 318
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.15 E-value=8.7 Score=37.09 Aligned_cols=135 Identities=11% Similarity=0.045 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG-SLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (510)
++..+-..-.+..-.+.|...|.++-+.-. .+. .++..-| .-|...++..-|.+.|+-.+..+ ++.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r------~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf-----~d~ 434 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKR------TRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKF-----GDS 434 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccC------Ccc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhc-----CCC
Confidence 344444555555666677777777655311 111 2222222 22566788888998888777653 244
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (510)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (510)
|.....| ...+...++-..|..+|++++.. ..+......+|..+-..-..-|+....+++=++-...+.
T Consensus 435 p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~s-------~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 435 PEYVLKY---LDFLSHLNDDNNARALFERVLTS-------VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hHHHHHH---HHHHHHhCcchhHHHHHHHHHhc-------cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 5544443 34567788888899999998875 122333445667777777778888877777666554443
No 319
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=4.5 Score=35.49 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 010446 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (510)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (510)
++-++-+.+.++-.+... .......++.++|..|.+.++.+.+.+++.+.+.-..... -..++..+-..+|.+|..
T Consensus 92 eeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 92 EEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhcc
Confidence 333444555555444432 2345678899999999999999999999998877554331 233455556667777765
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (510)
Q Consensus 342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (510)
+.-.++.++..+..++. |.+...........|.......++.+|-.++-..+..+.
T Consensus 168 ~~vV~e~lE~~~~~iEk-------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADDIIEK-------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHHh-------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 54445444444443333 566655555555567777777888888888877766543
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.10 E-value=1 Score=35.23 Aligned_cols=91 Identities=11% Similarity=-0.072 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
+....+..+++....-...++.+++..++...-.+ .|..+..-..-|.+++..|+|.+|+.+++....-.
T Consensus 5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL----------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVL----------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 33444555677777777799999998888766555 77778888888999999999999999998875432
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhhhcHH
Q 010446 193 DSLKDDEPLLDAILLHMGSMYSTLENYE 220 (510)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (510)
+.....--.++.|+..+|+.+
T Consensus 75 -------~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 -------GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -------CCchHHHHHHHHHHHhcCChH
Confidence 121222344566666666543
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=7.4 Score=39.63 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=37.8
Q ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
|.-|+.+++..+.+......++...|..++..|++++|...|-+++..
T Consensus 350 y~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 350 YKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 344455555555666777888899999999999999999999998765
No 322
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.76 E-value=0.38 Score=46.16 Aligned_cols=91 Identities=24% Similarity=0.361 Sum_probs=73.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 010446 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (510)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (510)
..+...|+...|+.++..|+... +......+.+||.+....|-...|-.++.+++.+. .......
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sepl~~ 679 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEPLTF 679 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCchHH
Confidence 33455799999999999998752 22334567899999999999999999999999874 1112456
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 333 CSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
+.+|..+....+.+.|++.++.|++.
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 77899999999999999999999987
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.75 E-value=0.17 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446 458 FPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (510)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (510)
.++..+|.++...|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35688999999999999999999999874
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.29 E-value=0.25 Score=26.56 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 416 THLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
.++..+|.++...|++++|...+++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778999999999999999999999874
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.23 E-value=1.5 Score=27.49 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
.+++.+|..+...|+|++|..+.+.++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 36788999999999999999999999998
No 326
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.00 E-value=2 Score=26.97 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 331 AMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
.++.+|..+.+.|+|++|..+.+.++++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5677899999999999999999999998
No 327
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.96 E-value=10 Score=34.99 Aligned_cols=128 Identities=12% Similarity=0.098 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHH
Q 010446 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMY 213 (510)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (510)
.+.-+.++++|++. .|.....+..+-.......+.++..+-+++++... +..+.+-..|...-...
T Consensus 47 ~E~klsilerAL~~----------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~----~~~~~LW~~yL~~~q~~ 112 (321)
T PF08424_consen 47 AERKLSILERALKH----------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN----PGSPELWREYLDFRQSN 112 (321)
T ss_pred HHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHH
Confidence 34556677777765 45555555555555566667777777777766553 33344433333333333
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446 214 STLENYEKSMLVYQRVINVLESRYGKT----------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (510)
...-.++.....|.+++.......... ......++..+.......|..+.|+..++-.+++.
T Consensus 113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 344568899999999998876653332 12456667788888899999999999999998874
No 328
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.88 E-value=8.4 Score=33.91 Aligned_cols=187 Identities=12% Similarity=0.049 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHHhhcC--------------CH
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---S-------ILLVTSLLGMAKVLGSIG--------------RA 261 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~ 261 (510)
-+.+..++...|+..+|+.-+++=+..+....+.. . ...+.-+..+|.+..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 35667888999999999999998888887765441 1 112233444555444332 12
Q ss_pred HHHHHHHHHHHHHHHHhcC-CC-Cc-chH--------------HHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHc
Q 010446 262 KKAVEIYHRVITILELNRG-TE-SA-DLV--------------LPLFSLGSLF---IKEGKAVDAESVFSRILKIYTKVY 321 (510)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~-~~-~~-~~~--------------~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~ 321 (510)
..|-.+...-.+..+.... ++ .+ ... .......... .........++.+.+|++.++...
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~ 172 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG 172 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence 3333333332333333320 01 00 000 0000001111 112233456788888888887652
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (510)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (510)
...........+|.-|...|++++|..+|+.+...+.+. .=......++..+..++...|+.+..+.+.-+
T Consensus 173 --~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e----gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 173 --QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE----GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred --cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 233455667789999999999999999999998887752 22344556778889999999998877765443
No 329
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.85 E-value=0.45 Score=45.64 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (510)
++.-|..+...|+...|..++..|+.... ......+.++|++....|-..+|-.++.+++.+. ..
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s 674 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS 674 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence 34445556668999999999999986532 1223456789999999999999999999999884 12
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (510)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (510)
.....+.+|+.|..+.+.+.|++.+++|++.
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 2355678999999999999999999999985
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.83 E-value=0.26 Score=25.50 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 010446 459 PMLHLGITLYHLNRDKEAEKLVLE 482 (510)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~ 482 (510)
+...+|.++..+|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 568899999999999999988763
No 331
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.78 E-value=5.9 Score=31.97 Aligned_cols=130 Identities=12% Similarity=0.054 Sum_probs=91.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
.+..+.+.+..++|+.-|...-+. ........+....+.+....|+...|...|..+-... ..|...
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lekt--------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~~~ 130 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKT--------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQIG 130 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcchh
Confidence 555667788888888877764332 1122334456778889999999999999998876543 123322
Q ss_pred --HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446 204 --AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (510)
Q Consensus 204 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (510)
.+...-+.++...|-|++-.... +.+-++.+|....+...||..-++.|++.+|...|.+...
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22345567778888877654433 3333566777788888999999999999999999998765
No 332
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=9.6 Score=34.40 Aligned_cols=91 Identities=24% Similarity=0.328 Sum_probs=68.6
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHH
Q 010446 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL 207 (510)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (510)
..+.++.++|+++.++..+..+.. ..+.........+|.++...||..++.+.+.......+....-.+.+...++
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 345568999999999988876552 2233556677788999999999999999999999888887777776666677
Q ss_pred HHHHHHH-hhhcHHHH
Q 010446 208 HMGSMYS-TLENYEKS 222 (510)
Q Consensus 208 ~l~~~~~-~~g~~~~A 222 (510)
.++.-|+ ..|++...
T Consensus 161 ~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 7766554 45676654
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.48 E-value=7.5 Score=37.50 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=82.7
Q ss_pred HhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 010446 173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (510)
Q Consensus 173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (510)
...|+++++.+..... ++.... |. .....++..+..+|.++.|+.....- ...+
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i----~~--~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rF--- 325 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNI----PK--DQGQSIARFLEKKGYPELALQFVTDP----------------DHRF--- 325 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG------H--HHHHHHHHHHHHTT-HHHHHHHSS-H----------------HHHH---
T ss_pred HHcCChhhhhhhhhhh-hhcccC----Ch--hHHHHHHHHHHHCCCHHHHHhhcCCh----------------HHHh---
Confidence 4567888877666421 222111 21 11466777888889888887755332 1122
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 010446 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (510)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (510)
.+..+.|+.+.|.+..++ ......|..||......|+++-|+..|+++-+ +
T Consensus 326 eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~ 376 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------------F 376 (443)
T ss_dssp HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------H
T ss_pred HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------c
Confidence 234567888877765432 22345788899999999999999999887643 2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (510)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (510)
..|..+|...|+.+.-.++.+.+... .+. +..-.++...|+.++.++.+.++
T Consensus 377 ~~L~lLy~~~g~~~~L~kl~~~a~~~--------~~~-------n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 SGLLLLYSSTGDREKLSKLAKIAEER--------GDI-------NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHT--------T-H-------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cccHHHHHHhCCHHHHHHHHHHHHHc--------cCH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556677777765444443333221 111 11223344557777766666553
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.41 E-value=0.32 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 010446 288 LPLFSLGSLFIKEGKAVDAESVFS 311 (510)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~ 311 (510)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999998875
No 335
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.29 E-value=4.4 Score=37.44 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--
Q 010446 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK-- 405 (510)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 405 (510)
+-.++..+|.-|...|+++.|++.|-++-..+.. ...+..++.++..+-...|+|..-..+-.+|......
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 5678889999999999999999999998877654 3445667788888888899998877777777654200
Q ss_pred hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446 406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (510)
Q Consensus 406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (510)
......+....+...+ +....++|..|..+|-.+
T Consensus 222 ~~~q~v~~kl~C~agL--a~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGL--ANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHhcCcchHHHHHH--HHHHHHHHHHHHHHHHhC
Confidence 0011122333444444 445556888888887654
No 336
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.29 E-value=9.3 Score=33.28 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHhcC
Q 010446 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREIAFG 492 (510)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~ 492 (510)
.++|...|++|+++....+.+.+|.......+.+..|+ ..|+.++|....++|+.-....++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 47899999999999999889999999988888888775 589999999999999887765443
No 337
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.09 E-value=4.4 Score=37.41 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh-
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN- 278 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 278 (510)
..+..++..+|.-|...|+++.|++.|-++-+.+.. ....+..+.++-.+-...|+|..-..+-.+|.......
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 345667889999999999999999999998777643 35667788888888899999998888888876652100
Q ss_pred -cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446 279 -RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (510)
Q Consensus 279 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (510)
....-+....+.. |.+....++|..|.+++-.+.
T Consensus 222 ~~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence 0001122233333 444555568888888876553
No 338
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=90.86 E-value=23 Score=39.44 Aligned_cols=154 Identities=17% Similarity=0.111 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc---C-------------------
Q 010446 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---G------------------- 301 (510)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g------------------- 301 (510)
..+....+|..+...|++.+|+..|..|++..+... |+-..+.++-.++.+..-. |
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~--D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSN--DYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcC--cHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 456677899999999999999999999999988754 4444444444443322110 1
Q ss_pred ----------------------------------ChHHHHHHHHHHHHHHHHHc---CCCChH--HHHHHHHHHHHHHHC
Q 010446 302 ----------------------------------KAVDAESVFSRILKIYTKVY---GENDGR--VGMAMCSLAHAKCAN 342 (510)
Q Consensus 302 ----------------------------------~~~~A~~~~~~al~~~~~~~---~~~~~~--~~~~~~~la~~~~~~ 342 (510)
-.+.=...+++++..+.+.. .+..|. ...+....+.++...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 01111234455555555442 111232 445666667776666
Q ss_pred C--------------------CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 343 G--------------------NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (510)
Q Consensus 343 g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (510)
. .-.++..++.+++..... .-+......++..+|.+|...|-..++-=+++.++..
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~----~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK----DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh----hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 6 677888888888876432 2344556778899999999999888877777776655
Q ss_pred H
Q 010446 403 T 403 (510)
Q Consensus 403 ~ 403 (510)
.
T Consensus 475 ~ 475 (1185)
T PF08626_consen 475 L 475 (1185)
T ss_pred h
Confidence 4
No 339
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=12 Score=33.68 Aligned_cols=128 Identities=16% Similarity=0.069 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh
Q 010446 138 IDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE 217 (510)
Q Consensus 138 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (510)
++-+++.++-..+ +.+..+...++...+..|.+.||-+.|.+.+.+...-.-.+|.. -++.-....+|..|....
T Consensus 84 i~eld~~iedaee----nlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k-iDVvf~~iRlglfy~D~~ 158 (393)
T KOG0687|consen 84 IKELDEKIEDAEE----NLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK-IDVVFYKIRLGLFYLDHD 158 (393)
T ss_pred HHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHHhhccHH
Confidence 3444444444433 23356778899999999999999999999998876654443322 334444567777776554
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (510)
-..+ ..+++-.+.++ |.+....-+.-..-|.......++.+|-.++-.++..+
T Consensus 159 lV~~---~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 159 LVTE---SIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHH---HHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 3333 33444444443 33333222333344666667788888888888777654
No 340
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.72 E-value=15 Score=34.72 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE--EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (510)
+.-.|-.+.+++++++|...|.+..+.... .|- ..+++.......+-..+.+.-...+-...+. .+.
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~-------~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~----~~~ 77 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKES-------SPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ----FGK 77 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhc-------chHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh----cCC
Confidence 666788889999999999999998765332 221 1123332222223344444444444333222 223
Q ss_pred chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh----------HHHHHHHHHHHHhhcCCHHHHHHHH
Q 010446 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL----------LVTSLLGMAKVLGSIGRAKKAVEIY 268 (510)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~ 268 (510)
.+.+ ..-.|...++.+++.+|++.+....+..... ..+. ....-...+.++...|++.++...+
T Consensus 78 s~~l---~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iL 151 (549)
T PF07079_consen 78 SAYL---PLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAIL 151 (549)
T ss_pred chHH---HHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3332 4556778889999999998776554432211 1110 1111234578899999999999999
Q ss_pred HHHHHHH
Q 010446 269 HRVITIL 275 (510)
Q Consensus 269 ~~al~~~ 275 (510)
++.+...
T Consensus 152 n~i~~~l 158 (549)
T PF07079_consen 152 NRIIERL 158 (549)
T ss_pred HHHHHHH
Confidence 9887654
No 341
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.69 E-value=5.5 Score=36.99 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh------h----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI------L----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (510)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (510)
..-|..++++++|..|..-|..+++++.+......| + ...+...+..||..+++.+-|+.+..+.+.+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-- 257 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-- 257 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence 344667788899999999999999887664221111 1 2234567899999999999999999998876
Q ss_pred HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (510)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (510)
+|....-+..-|.++..+.+|.+|-+.+.-+.-++-
T Consensus 258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYW 293 (569)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777788899999999999888776665553
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.34 E-value=5.9 Score=31.12 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 010446 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (510)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (510)
....+..+...-...++.+++...+....-+ .|.....-..-|.++...|++.+|+..++...+-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------- 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------- 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence 3444555555566688999988877654433 4566666777899999999999999999887652
Q ss_pred CChHHHHHHHHHHHHHHHCCCH
Q 010446 324 NDGRVGMAMCSLAHAKCANGNA 345 (510)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~ 345 (510)
.+......-.++.++..+|+.
T Consensus 74 -~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 -AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred -CCCchHHHHHHHHHHHhcCCh
Confidence 222233444466677777765
No 343
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.26 E-value=12 Score=32.69 Aligned_cols=184 Identities=11% Similarity=-0.012 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDD 369 (510)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (510)
..+|.+..+.++|++...+.+++++... + ......-.+.++.+|-. .|....+...+...-+.... .+ +.
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~---~~-~~ 75 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES---RG-NE 75 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhc---cC-ch
Confidence 4577888889999999999998877421 0 01111222333333322 45556666665542221111 01 11
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHHHh-----ccC-----HHHHHH
Q 010446 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH---PSFVTHLLNLAASYSR-----SKN-----FVEAER 436 (510)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 436 (510)
.. ..+..-|.. .=-++=..+....+.+....+-+.. ...+..+...|..|.- .|+ .++|..
T Consensus 76 ~~-----~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 76 DH-----VASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred HH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 11 111111111 0012334455666666655433321 1122222333444332 222 458999
Q ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 010446 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREI 489 (510)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 489 (510)
.|++|.++....+.+.||.......+.+..|+. +++.++|....++|+.-.-.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~ 203 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 203 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999998887889999988888888877765 69999998877777665543
No 344
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=17 Score=34.14 Aligned_cols=194 Identities=18% Similarity=0.131 Sum_probs=131.8
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (510)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (510)
-...+.....-+.++....++..|...+++..-.+.+. .+......+...++.++.+.+..-.+..+.-.++....+-
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey 346 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY 346 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence 33445666778889999999999999988876554332 2333456677788888888888888888887777776652
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHHHhccCHHHHHHH
Q 010446 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-----FVTHLLNLAASYSRSKNFVEAERL 437 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~ 437 (510)
.. +...+..-.+++......|..+.|...+..++....-..|-+... .+.++..-+..+ ...+.+.+.++
T Consensus 347 ---~l-dyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~ 421 (482)
T KOG4322|consen 347 ---SL-DYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRY 421 (482)
T ss_pred ---cc-chhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHH
Confidence 22 222334446788999999999999999999987664433221111 011111111122 45567888888
Q ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHH---HHHHHHHHHH
Q 010446 438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE---AEKLVLEALY 485 (510)
Q Consensus 438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~ 485 (510)
++++-+++.+. .-+..+.++.+-++..|-..|+..+ +...|+++..
T Consensus 422 L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 422 LDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 99888888776 4567788889999999999998654 5555565554
No 345
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.04 E-value=9.9 Score=33.81 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010446 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (510)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 493 (510)
...++..++..+...|+++.+++.+++.+.. +|..-..+..+-..|...|+...|+..|++.-....+-+|-
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4567888999999999999999999988873 67777788999999999999999999999999987777776
Q ss_pred CCc
Q 010446 494 DSL 496 (510)
Q Consensus 494 ~~~ 496 (510)
+..
T Consensus 224 ~P~ 226 (280)
T COG3629 224 DPA 226 (280)
T ss_pred Ccc
Confidence 643
No 346
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.04 E-value=17 Score=34.33 Aligned_cols=140 Identities=16% Similarity=0.042 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIAL--GYVYIGDLKFVQSLLDMMSGIVDSLK 196 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (510)
..-...+..+++.++|..|...++..... + ++... ...+..++. .+....++++|.+.++........+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r----l---~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR----L---PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----C---Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-
Confidence 34567788899999999999999997763 1 11111 344555544 4467889999999998866542110
Q ss_pred CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (510)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (510)
......+..+ -..-++...+.............-.......+..-|.--...|+|+.|...+-+++++.-
T Consensus 203 ---~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 203 ---NQEREGLKEL-------VEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA 272 (379)
T ss_pred ---HhHHHHHHHH-------HHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 0000111111 111122222222222111100000122333333444444568999999999999998864
Q ss_pred H
Q 010446 277 L 277 (510)
Q Consensus 277 ~ 277 (510)
+
T Consensus 273 Q 273 (379)
T PF09670_consen 273 Q 273 (379)
T ss_pred H
Confidence 3
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=7.8 Score=39.46 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
|.-|+.+++.. +.+.......+...|.-++..|++++|...|-+++..
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 44445555443 2233346677788899999999999999999998765
No 348
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=89.87 E-value=6.9 Score=29.42 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc-------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA-------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (510)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (510)
+..+|......+++-.++-+|++|+.+.++....... ..+.+..+||..+..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888899999999999999999998887322211 123456789999999999999999999887766555
Q ss_pred c
Q 010446 321 Y 321 (510)
Q Consensus 321 ~ 321 (510)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 349
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.86 E-value=5.7 Score=42.00 Aligned_cols=145 Identities=18% Similarity=0.093 Sum_probs=84.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010446 337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT 416 (510)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 416 (510)
+++...+.|+.|+..|++.-..+ |....-..+...+|..+..+-.-..--+.+.+|+..++...+ .+...-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 553 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-------PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPL 553 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-------CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCch
Confidence 34455556666666666654432 333333345567777776543333333667777777766643 333344
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHH-HHHHh-cCChHHHHHHHHHHHHHHHHhcCCC
Q 010446 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG-ITLYH-LNRDKEAEKLVLEALYIREIAFGKD 494 (510)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 494 (510)
-|...|.+|..+|++++-++.|.-|+..+ +.||......-.+. +.+.. ..+...|....--++.+..+..+..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch
Confidence 56677889999999999999999998864 56777655433322 11111 1223455555555665555544444
Q ss_pred C
Q 010446 495 S 495 (510)
Q Consensus 495 ~ 495 (510)
+
T Consensus 629 ~ 629 (932)
T PRK13184 629 E 629 (932)
T ss_pred H
Confidence 4
No 350
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=89.73 E-value=0.69 Score=43.13 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh
Q 010446 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469 (510)
Q Consensus 397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 469 (510)
-+++-+.+.++|+.|+++.......|-+|..+|+++..++++.-|+++.++.+.|-+|.+...+...++++..
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 3567778889999999988777778999999999999999999999999999999999988888888887754
No 351
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.64 E-value=6.8 Score=29.02 Aligned_cols=101 Identities=20% Similarity=0.164 Sum_probs=56.3
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhcCCCChh
Q 010446 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE----NYEKSMLVYQRVINVLESRYGKTSIL 243 (510)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~ 243 (510)
.+.-++..||+-+|+++.+...... +.+.. ....+..-|.++..+. +.+-=..++.-+++-+.+... -.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h---~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH---GEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc---cCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cChh
Confidence 3556788999999999999987765 22222 1233556677765543 334334444444444433211 1344
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (510)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (510)
.+..++.+|.-+.....|+++..-.++++.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 466666666655555445555555444443
No 352
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.33 E-value=15 Score=32.48 Aligned_cols=131 Identities=15% Similarity=0.036 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH
Q 010446 135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS 214 (510)
Q Consensus 135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (510)
++-++-+.+.++-.+. .++..+...++.++|..|.+.+|.+.+.+...+..+.....+- .-++.-+-..+|.+|.
T Consensus 92 eeki~Elde~i~~~ee----dngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~-KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 92 EEKIEELDERIREKEE----DNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL-KIDVFLCKIRLGLIYG 166 (412)
T ss_pred HHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc-chhhHHHHHHHHHhhc
Confidence 3344444444443332 3345677889999999999999999999999887665433222 2334444567787776
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446 215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (510)
.+.-..+.++.....++ + |.+....-+.-...|.......++.+|-.++...+..+
T Consensus 167 d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 167 DRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred cHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 66555555554444433 2 33333222333345666667778888888877776554
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.16 E-value=17 Score=35.11 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=22.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhhCChHHHHHHH
Q 010446 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE-VAILDIIALGYVYIGDLKFVQSLL 185 (510)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 185 (510)
-+.....|+++++..+....- + -|.. ..-...++..+...|-.+.|+.+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~-l----------l~~i~~~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASN-L----------LPNIPKDQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHHHTT-HHH-----HHHH-T----------GGG--HHHHHHHHHHHHHTT-HHHHHHHS
T ss_pred HHHHHHcCChhhhhhhhhhhh-h----------cccCChhHHHHHHHHHHHCCCHHHHHhhc
Confidence 345567888888776654110 0 1111 223455666667777777776553
No 354
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.05 E-value=16 Score=32.46 Aligned_cols=109 Identities=6% Similarity=-0.040 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChH-HHHHHHHHHHHhh
Q 010446 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK-FVQSLLDMMSGIV 192 (510)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~ 192 (510)
....++.++.-+..+.+.|++.-|.++..-.++.+.+.. .+........++.+....+.-+ +-.++.++++++.
T Consensus 6 y~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~-----~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS 80 (260)
T PF04190_consen 6 YDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSE-----DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS 80 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 344555677777888999999999998888777766522 2222233455666665554333 3455667777777
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 010446 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQR 228 (510)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (510)
..+....-....+..+|..+++.|++.+|..+|-.
T Consensus 81 -~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 81 -KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred -ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 33333333445577888888888888888877754
No 355
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=19 Score=33.47 Aligned_cols=144 Identities=13% Similarity=0.102 Sum_probs=99.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (510)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
..++.+.++.+|...-+..+....- .+...-+--.+.+|+.+..+|-..|+...-...+...+... .++.+....+..
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~-~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavL 211 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISI-QNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVL 211 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHH
Confidence 3456678888888877766543211 00011133345677888888888888777666666555443 335566666777
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (510)
.+.+-..|...+.|+.|.....++.-- . ...+...++.++.+|.+..-+++|..|.+++-+|+...
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 788888999999999998877665311 0 11223678889999999999999999999999998874
No 356
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.01 E-value=52 Score=38.39 Aligned_cols=132 Identities=13% Similarity=0.054 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 010446 345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424 (510)
Q Consensus 345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 424 (510)
..+-+-.+++++-..... ..-...++.+|...|++....|+++.|..++-.|.+.. ...+....|..
T Consensus 1645 ~~epILa~RRs~l~~~~~---~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~ 1711 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMR---SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKL 1711 (2382)
T ss_pred HHhHHHHHHHHHHHHhcc---ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHH
Confidence 334444445544333221 13356678899999999999999999999887776532 34677789999
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHhCCC---Chh------hHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHH
Q 010446 425 YSRSKNFVEAERLLRICLDIMTKTVGPD---DQS------ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI 489 (510)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~------~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 489 (510)
+..+|+...|+..+++.++....-.... .|. ...+...++......|+++ +-+++|+++.++..+
T Consensus 1712 lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1712 LWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 9999999999999999997654321111 011 1223444555555666643 345667777766654
No 357
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.97 E-value=16 Score=32.56 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
....++..++..+...|+++.++..+++.+.. +|..-..+..+-..|...|+...|+..|++.-....+-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 34667889999999999999999999998886 5666778888889999999999999999998876555444
Q ss_pred CCCh
Q 010446 323 ENDG 326 (510)
Q Consensus 323 ~~~~ 326 (510)
....
T Consensus 223 i~P~ 226 (280)
T COG3629 223 IDPA 226 (280)
T ss_pred CCcc
Confidence 4433
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.80 E-value=13 Score=32.93 Aligned_cols=72 Identities=22% Similarity=0.105 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (510)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 495 (510)
..+...+..|...|.+.+|+++.++++.+ +|..-..+..+-.++...|+--.|.+.|++.-+..+.-+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34556678899999999999999999884 5666677788889999999999999999999999888888654
No 359
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.62 E-value=1.3 Score=39.09 Aligned_cols=67 Identities=9% Similarity=-0.020 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
.+....++.+....+.|+.++|..+|+.|+.+ .|..+.++..+|...-...+.-+|-.+|-+++.+.
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL----------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc----------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 34445667788889999999999999999998 88899999999999988899999999999988765
No 360
>PRK10941 hypothetical protein; Provisional
Probab=88.51 E-value=8.8 Score=34.11 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
...+.+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.++|.+..|..-++..++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----- 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence 45677888999999999999999999999987 45555667789999999999999999999888764
Q ss_pred CCChHHHHH
Q 010446 323 ENDGRVGMA 331 (510)
Q Consensus 323 ~~~~~~~~~ 331 (510)
++.|.....
T Consensus 246 P~dp~a~~i 254 (269)
T PRK10941 246 PEDPISEMI 254 (269)
T ss_pred CCchhHHHH
Confidence 445554333
No 361
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=88.41 E-value=9 Score=28.83 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
+..+|....+.+++-.++-.|++|+.+.++....+.. .......++|..+...|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888889999999999999999998876322211 234457799999999999999999999887766554
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.31 E-value=1.5 Score=26.22 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=23.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 419 LNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
..+|..|..+|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 363
>PRK10941 hypothetical protein; Provisional
Probab=87.76 E-value=12 Score=33.28 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
+-+.-..+.+.++++.|+.+.+..+.+ .|+.+.-+...|.+|.+.|.+..|..-++..++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l----------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF----------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 334446778999999999999999988 88888888999999999999999999998887765
No 364
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.74 E-value=1.2 Score=41.64 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (510)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (510)
+...|.+++.-.|+|..|++.++..---....+....+....+++.+|-+|..+++|.+|+..|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667888999999999999876532111112223344556788999999999999999999999998876655
No 365
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.65 E-value=14 Score=34.52 Aligned_cols=104 Identities=14% Similarity=0.017 Sum_probs=74.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC---h---h----HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEH---P---S----FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (510)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~---~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (510)
=|..++++++|..|..-|..++++..+...... + + ...+-..|..||..+++.+-|+....+.+.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l---- 257 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL---- 257 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence 355666777888887778877777654321111 1 1 1234557899999999999999998888763
Q ss_pred hCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (510)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 490 (510)
+|....-+..-|.++..+.+|.+|..-+.-+.-++--.
T Consensus 258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~ 295 (569)
T PF15015_consen 258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS 295 (569)
T ss_pred ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666667788889999999999988777766665443
No 366
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.15 E-value=7.4 Score=26.51 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCC
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNK 157 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 157 (510)
...+...+..+-+.|++.+|+.+|+++++.+.+.....++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD 45 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPD 45 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456778888899999999999999999998887644333
No 367
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=87.09 E-value=26 Score=38.99 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---CC--------------------
Q 010446 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NG-------------------- 343 (510)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g-------------------- 343 (510)
....-.+|..+...|++.+|++.|.+|+...+.. .++-+.+.++-.++.+..- .|
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 4556678999999999999999999999998875 3445555555444432211 00
Q ss_pred ---------------------------------CHHHHHHHHHHHHHHHHhhcc--CCCC-ChHHHHHHHHHHHHHHHcC
Q 010446 344 ---------------------------------NAEEAVELYKKALRVIKDSNY--MSLD-DSIMENMRIDLAELLHIVG 387 (510)
Q Consensus 344 ---------------------------------~~~~A~~~~~~al~~~~~~~~--~~~~-~~~~~~~~~~la~~~~~~g 387 (510)
-...-.+.+++++..+.+... .... ......+...++.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 011222334444444444210 0011 1233456667777777777
Q ss_pred --------------------ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446 388 --------------------RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (510)
Q Consensus 388 --------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (510)
.-.++.++..+++....... ...+...++..+|.+|...|-..++.-+++.++...
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 67778888888877654322 345667889999999999998888777777666544
No 368
>PRK14707 hypothetical protein; Provisional
Probab=86.77 E-value=68 Score=37.21 Aligned_cols=315 Identities=10% Similarity=-0.007 Sum_probs=166.4
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHH--HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL 244 (510)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 244 (510)
.+++++...++|.++..+-..+..+...+..+ +.....+ ..+++++...+++.+...+-.-+..+...+........
T Consensus 836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e-~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrq 914 (2710)
T PRK14707 836 HVATVLNAMSKWPDNAVCAAAAGAMAERLADE-PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRK 914 (2710)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHhcC-hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHh
Confidence 45666777777777766666666665554333 2222222 34566666677777666666666655555422111111
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
...-..+++++-..+++.++-.+-.-+..+...... .+..... --.+++++...+++.+...+-.-+..+.....
T Consensus 915 al~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~- 991 (2710)
T PRK14707 915 ALSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV- 991 (2710)
T ss_pred hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh-
Confidence 222334566666666666654444444444444321 2222222 23467777778888776666665555555442
Q ss_pred CCChH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 010446 323 ENDGR--VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME--NMRIDLAELLHIVGRGQEGRELLEE 398 (510)
Q Consensus 323 ~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 398 (510)
+++. ....-..+++++....++.++-.+-.-+..+.... ..+ +... .--..++.++....++.+.-.+-.-
T Consensus 992 -~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL---a~e-p~L~~amdaQ~lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707 992 -DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL---SND-PGLCKALSSQGLTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred -ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh---ccC-HhhhhhcchHHHHHHHHhhccCCCchhHHHH
Confidence 1222 11223445666666777765555444455444442 111 1111 1114577777777887765555554
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 010446 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478 (510)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (510)
+..+.........-.....-..++.++....++.+.-.+-+.++.+........++........++.+.....++.....
T Consensus 1067 a~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~ 1146 (2710)
T PRK14707 1067 ASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQA 1146 (2710)
T ss_pred HHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchH
Confidence 44444433211111111223356667777777877777777777777776554444444445666666666666665544
Q ss_pred HHHHHHHHHHHh
Q 010446 479 LVLEALYIREIA 490 (510)
Q Consensus 479 ~~~~al~~~~~~ 490 (510)
+=.-+..+..++
T Consensus 1147 cr~Aa~~LA~RL 1158 (2710)
T PRK14707 1147 CESAIDVLAATL 1158 (2710)
T ss_pred HHHHHHHHHHHh
Confidence 444444444444
No 369
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.76 E-value=29 Score=32.89 Aligned_cols=64 Identities=9% Similarity=-0.077 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH--HHHHHhhhcHHHHHHHHHHHHHH
Q 010446 164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM--GSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
.....+...+..++|..|...+..+... +++... ...+..+ |..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445566778999999999999987764 222222 2334444 45567778899999999987764
No 370
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=86.60 E-value=16 Score=29.84 Aligned_cols=165 Identities=8% Similarity=0.022 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH-----hhhcHHHHHHHHHHHHHHH
Q 010446 160 EEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS-----TLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 160 ~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~ 233 (510)
..++....||..+-. +.+|++|..+|..- -+.......-+.+|..+. ..+++..|...+..+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~n--------Cden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~- 102 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKN--------CDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA- 102 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-
Confidence 344555555554422 34555555555431 122223333455555443 345788888888887652
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhhc-----CC--HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-------
Q 010446 234 ESRYGKTSILLVTSLLGMAKVLGSI-----GR--AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK------- 299 (510)
Q Consensus 234 ~~~~~~~~~~~~~~~~~la~~~~~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------- 299 (510)
+ ...+..++|.++..- ++ ..+|++++.++-++ ....+.+.|...|..
T Consensus 103 ------n---~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t 163 (248)
T KOG4014|consen 103 ------N---IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKT 163 (248)
T ss_pred ------C---CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcc
Confidence 2 234555666665542 23 67888888887654 112333333333332
Q ss_pred -----------------cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 010446 300 -----------------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV 358 (510)
Q Consensus 300 -----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 358 (510)
..+.+.|.++.-+|-++ ++ ..+..|+...|.. -.+-++|..+-.+|.++
T Consensus 164 ~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel-------~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 164 NAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL-------DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred cCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-------CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 24455566555555543 33 3455666666644 24678999999999988
Q ss_pred HHhh
Q 010446 359 IKDS 362 (510)
Q Consensus 359 ~~~~ 362 (510)
.++.
T Consensus 234 ~~e~ 237 (248)
T KOG4014|consen 234 MEEL 237 (248)
T ss_pred HHHH
Confidence 7764
No 371
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.51 E-value=1.6 Score=41.01 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (510)
++..+..++.-+|+|..|++.++..---.+.....-.+..+.+++.+|.+|..+++|.+|++.|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577888999999999998876431111112222345566788999999999999999999999988765443
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.48 E-value=1.5 Score=26.20 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 461 LHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
..||.+|..+|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999885
No 373
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.32 E-value=2.6 Score=39.51 Aligned_cols=139 Identities=14% Similarity=0.086 Sum_probs=88.7
Q ss_pred ChhHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhhhhcC-------CCchHHHHHHHHHH----HHHHhhhcHHHHHHH
Q 010446 158 GIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLK-------DDEPLLDAILLHMG----SMYSTLENYEKSMLV 225 (510)
Q Consensus 158 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~ 225 (510)
.....+++-.+|..|.. ..|.-.|..++.++.+....-+ ...|..+.-+.... ..-.-.++.+ .+
T Consensus 241 r~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~ 317 (615)
T KOG0508|consen 241 RESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EM 317 (615)
T ss_pred hhhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HH
Confidence 34445667777777643 3356667778777666543311 11122211111111 0111111221 12
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 010446 226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 299 (510)
Q Consensus 226 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 299 (510)
--+++-+.+.++++.+++........|-+|...|+++..++++.-|+++.++...+-.|.+...+...+.++..
T Consensus 318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 23566677788899999887777788999999999999999999999999998888888888888777776543
No 374
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.30 E-value=25 Score=31.73 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=35.2
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (510)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (510)
+.-.+..+..+-++....++++ ++..+.+|..++.-- .--..+|++.++++++..+.
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~ 248 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET 248 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH
Confidence 3334445555666666677776 466677776666432 22356788888888876543
No 375
>PF13041 PPR_2: PPR repeat family
Probab=86.25 E-value=4.4 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 416 THLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
.+|+.+-..|.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5688889999999999999999999886
No 376
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=85.65 E-value=14 Score=28.37 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Q 010446 387 GRGQEGRELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (510)
Q Consensus 387 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (510)
|....-..++++++...... .-.+++....++...+.. -+ .+.+.|..+.. +.. ....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~----~~--~~~~if~~l~~---~~I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL----SS--DPREIFKFLYS---KGI---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----BS--HHHHHHHHHHH---HTT---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----cc--CHHHHHHHHHH---cCc---cHHHHHHHHHHHH
Confidence 55566677888888877432 112345555555554442 22 77888876655 222 3345677888999
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 010446 466 TLYHLNRDKEAEKLVLEAL 484 (510)
Q Consensus 466 ~~~~~g~~~~A~~~~~~al 484 (510)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998864
No 377
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.64 E-value=8.3 Score=26.28 Aligned_cols=42 Identities=29% Similarity=0.252 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (510)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (510)
..+...|.-+-..|++.+|+.+|+++++...+.....||.+.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 344556666788999999999999999988776444454443
No 378
>PRK14707 hypothetical protein; Provisional
Probab=85.52 E-value=79 Score=36.76 Aligned_cols=316 Identities=10% Similarity=0.026 Sum_probs=151.8
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHH--HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL 244 (510)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 244 (510)
.++.++...++|.+...+-..+..+...+..+ +.....+ ..+++++....++.++-.+-.-+..+...+........
T Consensus 878 evantLNALSKWPd~~~C~~AA~aLA~rL~~d-~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~ 956 (2710)
T PRK14707 878 GVVIVLNALSKWPNVPVCAAAASALAERLADE-PELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLRE 956 (2710)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHHhcC-HHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhh
Confidence 45666666777777666666666665554322 3332222 34566666666666654444444444433321111111
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (510)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (510)
+..-..+++++-..+++.+...+-.-+..+..... +.+.... .-..+++++....++.++-.+-.-+..+...+-
T Consensus 957 Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa- 1033 (2710)
T PRK14707 957 ALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS- 1033 (2710)
T ss_pred hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-
Confidence 12223456666667777666655555555544432 1111111 123466677777777666555555555555542
Q ss_pred CCChHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH-HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 323 ENDGRVG--MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEEC 399 (510)
Q Consensus 323 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (510)
..+... ..-..++.++....++.+....-.-+..+.... ..+... ....-..++.++...-++.+.-.+-+.+
T Consensus 1034 -~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL---~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa 1109 (2710)
T PRK14707 1034 -NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERL---SDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAA 1109 (2710)
T ss_pred -cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHh---hccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHH
Confidence 222222 223445666666666655444433333333321 111110 0111245667777777777766666677
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446 400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (510)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (510)
+.+.........+........++.+.....++.....+=.-+..+..+......-.....-..++..+-...++.+.-.+
T Consensus 1110 ~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac 1189 (2710)
T PRK14707 1110 SALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVC 1189 (2710)
T ss_pred HHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHH
Confidence 77776664443333333334455555555554443333333333333332111111111123455555555555555555
Q ss_pred HHHHHHHHHHh
Q 010446 480 VLEALYIREIA 490 (510)
Q Consensus 480 ~~~al~~~~~~ 490 (510)
-+-++.+....
T Consensus 1190 ~~A~~~La~rl 1200 (2710)
T PRK14707 1190 RSAFVLLAERA 1200 (2710)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 379
>PF12854 PPR_1: PPR repeat
Probab=85.44 E-value=2.4 Score=23.60 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010446 329 GMAMCSLAHAKCANGNAEEAVELYKK 354 (510)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (510)
..+|+.+...+.+.|+.++|.+++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46788899999999999999999876
No 380
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.13 E-value=41 Score=33.09 Aligned_cols=179 Identities=15% Similarity=0.079 Sum_probs=106.3
Q ss_pred cCChHHHHHHHHHHHHHHHHH----cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------
Q 010446 300 EGKAVDAESVFSRILKIYTKV----YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS------------- 362 (510)
Q Consensus 300 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------- 362 (510)
...|++|...|.-+.....-. .-..+|..+..+..++.++..+|+.+-|..+.++++=.+...
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 445778888877776654211 011356677889999999999999999999999998666553
Q ss_pred -ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446 363 -NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (510)
Q Consensus 363 -~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (510)
.+..+.+..+..+++..-..+.+.|-+..|.++.+-.+.+.. ..+|.- +...+-....+..+|+=-++.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp----~eDPl~--~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDP----SEDPLG--ILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----cCCchh--HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111222333334445556667788999999998887766521 113322 2222222333455666555555544
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHH
Q 010446 442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLEALYIRE 488 (510)
Q Consensus 442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 488 (510)
-.. .+. ..-|....+ ..+|..|..... -+.|...+.+|+.+..
T Consensus 405 e~~-n~l--~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 405 ENM-NKL--SQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred Hhh-ccH--hhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 221 111 012333221 345666666555 5678888999987665
No 381
>PF12854 PPR_1: PPR repeat
Probab=85.12 E-value=2.8 Score=23.31 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446 286 LVLPLFSLGSLFIKEGKAVDAESVFSR 312 (510)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 312 (510)
...+|+.+...|.+.|+.++|.+++++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 357889999999999999999999876
No 382
>PF13041 PPR_2: PPR repeat family
Probab=85.00 E-value=4.9 Score=24.67 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
..+|+.+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 346888899999999999999999998864
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.10 E-value=30 Score=30.76 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (510)
..+...+..|...|.+.+|+.+.++++.+ +|.....+..+-.++...|+--.+.+.|++.-+..+.-+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34555678889999999999999999987 5666677778888899999999999999888777666655443
Q ss_pred h
Q 010446 326 G 326 (510)
Q Consensus 326 ~ 326 (510)
.
T Consensus 352 d 352 (361)
T COG3947 352 D 352 (361)
T ss_pred c
Confidence 3
No 384
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.53 E-value=40 Score=31.82 Aligned_cols=116 Identities=12% Similarity=-0.009 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHh
Q 010446 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KTSILLVTSLLGMAKVLGSIGRA---KKAVEIYHRVITILELN 278 (510)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~ 278 (510)
.++..|........|++|+..+-.|-+.+-.... ..-...+..-..+.+||+.+.+. .+|..-+..+-+-+...
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3566677788888899998888777665533200 00011222333456677766543 45655555554444333
Q ss_pred c-----------CCCCcchH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446 279 R-----------GTESADLV---LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (510)
Q Consensus 279 ~-----------~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (510)
+ |+..|..+ ..+..-|.+.+.+|+-++|.++++.+.....+.
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 3 34445443 334556899999999999999999998876654
No 385
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.37 E-value=49 Score=32.66 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (510)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (510)
.+.....|......-...|+++...-.+++++--+.. ....|...+......|+.+-|...+.++.++.
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~----------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~- 361 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL----------YDEFWIKYARWMESSGDVSLANNVLARACKIH- 361 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh----------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-
Confidence 3445556666677778899999999999998865432 23456777888888899998888888877764
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 010446 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478 (510)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (510)
.+....+...-+..-...|+++.|...++...+- -|....+-..-+.....+|+.+.+..
T Consensus 362 ------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 362 ------VKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred ------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH
Confidence 3334455556677778889999999999988762 25555555555666778888887774
No 386
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=83.34 E-value=25 Score=29.15 Aligned_cols=108 Identities=20% Similarity=0.154 Sum_probs=58.3
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh--
Q 010446 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-- 243 (510)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 243 (510)
...+......|++++|...++++......+...-..... ++.-|.+-..+..|-+|..+|.-.-.- .-+++.
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe-l~~ag~~~~a~QEyvEA~~l~~~l~~~-----~~ps~~EL 106 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE-LYFAGFVTTALQEYVEATLLYSILKDG-----RLPSPEEL 106 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhhcchHHHHHHHHHHHHHHhcC-----CCCCHHHc
Confidence 444555678899999999998887766543211111111 233344444455666666555432211 011111
Q ss_pred ---HHHHHHHHH----------HHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446 244 ---LVTSLLGMA----------KVLGSIGRAKKAVEIYHRVITILELNR 279 (510)
Q Consensus 244 ---~~~~~~~la----------~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (510)
.......+| ......|++++|..+++-+-+++....
T Consensus 107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm 155 (204)
T COG2178 107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELM 155 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 111222222 335567899999988887777665543
No 387
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.17 E-value=7.1 Score=36.96 Aligned_cols=130 Identities=11% Similarity=0.103 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
.....+...+..|+...|-.-...++.. .+..+......+.+....|+|+.+...+.-+..+. +..+
T Consensus 291 ~~~~si~k~~~~gd~~aas~~~~~~lr~----------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~---~s~~ 357 (831)
T PRK15180 291 EITLSITKQLADGDIIAASQQLFAALRN----------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII---GTTD 357 (831)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHh----------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh---cCCc
Confidence 3444455566777777776666665554 44444555667788889999999988887665554 2221
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
. +...+-......|++++|.....-.+.- + -++|+ +...-+..-...|-+++|..++++.+.+
T Consensus 358 ~----~~~~~~r~~~~l~r~~~a~s~a~~~l~~--e---ie~~e---i~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 358 S----TLRCRLRSLHGLARWREALSTAEMMLSN--E---IEDEE---VLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred h----HHHHHHHhhhchhhHHHHHHHHHHHhcc--c---cCChh---heeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 1 1233344556677777776655544321 0 01121 2222233334455566666666666554
No 388
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=82.72 E-value=32 Score=30.06 Aligned_cols=183 Identities=10% Similarity=0.022 Sum_probs=104.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDE 199 (510)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (510)
+...+...-+.|+|++.+.+..++.+... +......-.+.+..+|- ..|....+.+.+.....-....+ .
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~-------~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~--~ 74 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD-------SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG--N 74 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC-------CccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccC--c
Confidence 44566777788999999998888765311 01222333455555553 46777777777765332211111 1
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHhhc-----CC-----HHHHHH
Q 010446 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---ILLVTSLLGMAKVLGSI-----GR-----AKKAVE 266 (510)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~ 266 (510)
+.. ..+..-|. ..=-++-...+...+.+....+-+.. ...+-.+...|..|... |+ .++|..
T Consensus 75 ~~~----~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 75 EDH----VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred hHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111 11111111 11123444566677777665543332 12222233344444332 22 458899
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 010446 267 IYHRVITILELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 317 (510)
.|++|.++......+.+|-......+.+..|+ -+++.++|....+++..-.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999887666777766666666666555 5699999998888877654
No 389
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.49 E-value=56 Score=32.66 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (510)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (510)
-.++.+-|.-.++..+|..++++|...+.....- ..+...+....+++.||..+.+.++|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3445677778889999999999999998765331 223355788889999999999999999999999775
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (510)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (510)
.|...-....+-.+....|.-++|+...........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 333445555566677778889999988887766543
No 390
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.40 E-value=7.4 Score=35.46 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHH
Q 010446 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQS 183 (510)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 183 (510)
+....+..++..|+..+..+++++|...|..|..+...++ +..+.+...+++..|..++..++.+...-
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~--Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY--GEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777899999999999999999999999999988887 56677788899999999988887776643
No 391
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.85 E-value=81 Score=34.08 Aligned_cols=183 Identities=11% Similarity=0.059 Sum_probs=107.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHH----------HHh--------cCCC--Ccch-HHHHHHHHHHHHHcCChHH
Q 010446 247 SLLGMAKVLGSIGRAKKAVEIYHRVITIL----------ELN--------RGTE--SADL-VLPLFSLGSLFIKEGKAVD 305 (510)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~~~--------~~~~--~~~~-~~~~~~la~~~~~~g~~~~ 305 (510)
..+.+|.+|...|+..+|+.+|.+|..-. ... .|+. .+.. ...|...-+++...+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 45567888999999999999999986532 110 0111 1111 2233334455555566666
Q ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 010446 306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385 (510)
Q Consensus 306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (510)
+.....+|++. .++++|..+..+.++=.-+...|.+-+|...+-+ .++......++..+..+++.
T Consensus 1002 vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-----------npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-----------NPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHHh
Confidence 66666666554 3566777777777777778888888877665433 35555556677888888888
Q ss_pred cCChHHHHH-----HHHHHHH-HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH-HHHHHHHH
Q 010446 386 VGRGQEGRE-----LLEECLL-ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER-LLRICLDI 444 (510)
Q Consensus 386 ~g~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 444 (510)
.|+++.=.+ +-++... +.++............|..|-..+...+++.+|-. +|+.+..+
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 888653211 1122222 11111111222222345555556778888887654 56666654
No 392
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.84 E-value=20 Score=33.66 Aligned_cols=118 Identities=17% Similarity=-0.007 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCChhHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHH
Q 010446 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLAASYSRSKN---FVEAERLLRICLDIMTKT 448 (510)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~ 448 (510)
.++..|.+......|++|+.++-.|-+.+..... .....++..-..+.+||+...+ ..+|..-+..+-.-+...
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3455566666777777777777666554432200 0111222333345677777665 345555555444444433
Q ss_pred hC-----------CCChhhH---HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcC
Q 010446 449 VG-----------PDDQSIS---FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492 (510)
Q Consensus 449 ~~-----------~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 492 (510)
+| +..|..+ ..+..-|.+.+++|+-++|.++++.+.....+..-
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki 302 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKI 302 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeec
Confidence 33 3345433 34455689999999999999999999987776533
No 393
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=81.77 E-value=2.8 Score=22.24 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 417 HLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
+|+.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999998765
No 394
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.74 E-value=37 Score=30.14 Aligned_cols=204 Identities=14% Similarity=0.054 Sum_probs=97.0
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446 211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK-KAVEIYHRVITILELNRGTESADLVLP 289 (510)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (510)
..+.+.|++..|.++..-.++.+.+... +.......+++.+....+.-+ +-..+.+++++.. +. +.........
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~---~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~~~Gdp~L 92 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSED---PVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KF-GSYKFGDPEL 92 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-TT--HHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc-CCCCCCCHHH
Confidence 3344445555555555444444444211 111122334555554443222 3456677777776 32 3334455678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH-----------HHHHHHHcCCCChHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHH
Q 010446 290 LFSLGSLFIKEGKAVDAESVFSRI-----------LKIYTKVYGENDGRVGMAMC-SLAHAKCANGNAEEAVELYKKALR 357 (510)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 357 (510)
+..+|..|++.|++.+|+.+|-.. +...... ..+.....+. .....|...++...|...+..-.+
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~---~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK---GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH---TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh---cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 889999999999999999887421 1111111 1122222222 233457778999999988877776
Q ss_pred HHHhh----c----cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc
Q 010446 358 VIKDS----N----YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 429 (510)
Q Consensus 358 ~~~~~----~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 429 (510)
...+. . ...++.|.+-.++. +-.+ +..++ ...|....+.+..... .+|.....+..+|..|+...
T Consensus 170 ~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t-~e~~~----~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 170 KLIESHPKLENSDIEYPPSYPLLNFLQL-LLLT-CERDN----LPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHH---EEEEEEEEESS-HHHHHHHH-HHHH-HHHT-----HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH---
T ss_pred HHhccCcchhccccCCCCCCchHHHHHH-HHHH-HhcCc----HHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCCC
Confidence 53321 0 11223343322222 2222 22332 3556655555444321 23455667777888887644
No 395
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.11 E-value=3.2 Score=35.08 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=48.5
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446 212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (510)
Q Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (510)
.....++.+.|.+.|.+++.+. |.....|+.+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4456789999999999999874 566788999999999999999999999999987
No 396
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.86 E-value=43 Score=30.23 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (510)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (510)
..+.....||.+|...+++..|-..+.-. ..-......+.......+..+|.+|...++..+|..+..++--....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~--- 176 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE--- 176 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc---
Confidence 34566778999999999999887665422 11000000112234567888999999999999999999887544332
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (510)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (510)
..++..........|+++-..+++-+|-..|.+.
T Consensus 177 -~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 177 -SSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333344455677777788887776665543
No 397
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.68 E-value=24 Score=27.29 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 286 LVLPLFSLGSLFIKEGKA---VDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 286 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
...+.+++++++....+. .+.+.+++..++ ..+| ......+.|+..+.+.|+|+++..+.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456788899998876654 445555555543 1233 34456778899999999999999999998876
No 398
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.67 E-value=16 Score=25.11 Aligned_cols=35 Identities=6% Similarity=-0.034 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 010446 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ 151 (510)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~ 151 (510)
....+...+...=+.|+|++|+.+|..+++.+...
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34457778888889999999999999999988764
No 399
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=80.49 E-value=16 Score=25.14 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (510)
...++..|...=..|++++|+.+|.++++.+....
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34467788888899999999999999999988765
No 400
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.41 E-value=3.8 Score=34.67 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=50.8
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
.....|+.+.|.+.|.+++++ .|+....|..+|......|+++.|...|++.+++.
T Consensus 4 ~~~~~~D~~aaaely~qal~l----------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL----------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc----------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 456789999999999999998 88889999999999999999999999999988874
No 401
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.88 E-value=43 Score=29.66 Aligned_cols=111 Identities=10% Similarity=0.022 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHH-HHHHHHHHHhh
Q 010446 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFV-QSLLDMMSGIV 192 (510)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 192 (510)
....++.++..+..+.+.++..-|.++.-..++...+.. ..+...-.-+++.+....+.-+.. ..+.+.++++.
T Consensus 42 ~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~-----~ad~~~~~anl~~ll~e~~~~eper~~~v~raikWS 116 (312)
T KOG3024|consen 42 HEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAE-----VADSLLKVANLAELLGEADPSEPERKTFVRRAIKWS 116 (312)
T ss_pred hhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH-----hhHhHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Confidence 344555577777788888888777777777666554421 111111112344444444433333 34556777777
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 010446 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRV 229 (510)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 229 (510)
...+...--....+..+|..++..+++.+|..+|-.+
T Consensus 117 ~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 117 KEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 6653333333445788999999999999999888654
No 402
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=79.40 E-value=6 Score=35.09 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=47.1
Q ss_pred HHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
+.-....|+.++|..+|+.++.+. |....++..+|......++.-+|..+|-+|+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlala-------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALA-------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcC-------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 333457899999999999999876 444455889999998889999999999999876
No 403
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=79.05 E-value=51 Score=30.06 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=64.0
Q ss_pred HHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010446 172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM 251 (510)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 251 (510)
..+.+|.++|++++++..+....... +..+.......|.++...|+..++.+.+...-+......+-. +.+-..++.+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e-~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY~l 162 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKE-PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFYSL 162 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHHHH
Confidence 34567999999999998877655322 234555677889999999999999999998888776653332 3334445555
Q ss_pred HH-HHhhcCCHHHHHHH
Q 010446 252 AK-VLGSIGRAKKAVEI 267 (510)
Q Consensus 252 a~-~~~~~g~~~~A~~~ 267 (510)
+. .|...|++...-..
T Consensus 163 ssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 44 45556777754433
No 404
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.92 E-value=3.8 Score=21.69 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 289 PLFSLGSLFIKEGKAVDAESVFSRILK 315 (510)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (510)
+|+.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999988764
No 405
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=78.38 E-value=12 Score=25.77 Aligned_cols=33 Identities=15% Similarity=-0.006 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446 463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (510)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 495 (510)
.|.-+...|++++|+.+|.++++........+.
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~ 46 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLEGIKVES 46 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 344456689999999999999999988765553
No 406
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=77.99 E-value=37 Score=27.87 Aligned_cols=152 Identities=15% Similarity=0.057 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 010446 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-----ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383 (510)
Q Consensus 309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~ 383 (510)
-|++|..+++....++ ..+.+.+.+|..+. ..++...|++.+..+-.. +.+ .+-.++|.++
T Consensus 50 nF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---------n~~---~aC~~~gLl~ 115 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---------NIP---QACRYLGLLH 115 (248)
T ss_pred HHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---------CCH---HHHhhhhhhh
Confidence 4555555555443222 23334444554433 245788888888877653 111 2234556555
Q ss_pred HHc-----CC--hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH------------------------hccCHH
Q 010446 384 HIV-----GR--GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS------------------------RSKNFV 432 (510)
Q Consensus 384 ~~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~ 432 (510)
... ++ ..+|++++.++-++- ...+...|...|. -..+.+
T Consensus 116 ~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd 185 (248)
T KOG4014|consen 116 WNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD 185 (248)
T ss_pred ccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence 432 23 567888888775531 1222333333333 334556
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHhcCCC
Q 010446 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKD 494 (510)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 494 (510)
+|.++--+|-++ ++ ..+..++.+.|.. -.+-++|..+-.+|.++.++....+
T Consensus 186 ka~qfa~kACel-------~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~~ 241 (248)
T KOG4014|consen 186 KALQFAIKACEL-------DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKND 241 (248)
T ss_pred HHHHHHHHHHhc-------CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 666665555552 23 3555677776653 2457899999999999998875443
No 407
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=77.64 E-value=8 Score=25.87 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010446 461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (510)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 494 (510)
...|.-+...|++++|+.+|.++++.........
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~ 42 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEYLMQALKSE 42 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 4455566789999999999999999988765544
No 408
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.55 E-value=7.1 Score=35.55 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHH
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 267 (510)
+...|+-.+.++++++|...|..|..+....+|..+.....+++..|..++..++.+.+.-.
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67788999999999999999999999999999999999999999999999998888776544
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.21 E-value=24 Score=25.22 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=26.7
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
+|....+.+.+|..+...|++++|++.+-.++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566678889999999999999999998887776
No 410
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.17 E-value=5.6 Score=21.62 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 417 HLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
+|+.+-..|.+.|++++|.+.|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 366778889999999999999998765
No 411
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=76.15 E-value=21 Score=24.68 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Q 010446 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (510)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (510)
.+...|..+...|+.++|+.+|++++....+...-
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai 44 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELEEGIAV 44 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 34455566677799999999999999988776543
No 412
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=76.05 E-value=1.2e+02 Score=32.70 Aligned_cols=100 Identities=8% Similarity=-0.052 Sum_probs=57.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (510)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
+.+.....|++|+..|++.-.. -++..+--++.+..|.....+-.-..-.+.+.+|+...+.+.+.. ...--
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 554 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES-------FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV-GAPLE 554 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc-------CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-CCchH
Confidence 3445555566666666554432 444455566777777776543211111134444444443332221 11112
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 206 LLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
|...|.+|.+.|++++-++.|.-|++.+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 6677888999999999999999999875
No 413
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.20 E-value=64 Score=29.19 Aligned_cols=110 Identities=13% Similarity=0.039 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010446 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (510)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (510)
++.....||.+|.+.++|..|...+.-. .... +....+.......+..+|++|.+.++..+|..+..++--.....
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~t--g~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGI-PLDT--GQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcc-Cccc--chhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 5667788999999999999888766432 1100 00112334445677889999999999999999988875443322
Q ss_pred CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010446 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (510)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (510)
.+..-....-...|++.-..++|-+|...|-+..
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233345667777788877766665443
No 414
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.14 E-value=1.3e+02 Score=32.69 Aligned_cols=186 Identities=13% Similarity=0.046 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH----------HHH--------cCCC--ChHH-HHHHHHHHHHHHHCCCHHH
Q 010446 289 PLFSLGSLFIKEGKAVDAESVFSRILKIY----------TKV--------YGEN--DGRV-GMAMCSLAHAKCANGNAEE 347 (510)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~~~--------~~~~--~~~~-~~~~~~la~~~~~~g~~~~ 347 (510)
....+|.+|...|...+|+..|.+|..-. ... -|.. .+.. ...|...-.++..-+..++
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 34567888999999999999999886521 010 0100 0111 2233334445555566666
Q ss_pred HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010446 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 427 (510)
Q Consensus 348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 427 (510)
+..+..+|++. .+++.+..+.++..+-+-....|.+-+|...+-+- ++......++..+-.++++
T Consensus 1002 vcQlA~~AIe~------l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN------LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHHHHh------CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHh
Confidence 66666666655 36677777777777777788888888877654331 2233344677788888888
Q ss_pred ccCHHHHHH-----HHHHHHH-HHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHH
Q 010446 428 SKNFVEAER-----LLRICLD-IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK-LVLEALYIREI 489 (510)
Q Consensus 428 ~g~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~ 489 (510)
.|+++.=.. +-++... +.+.............|..|--.+...+++.+|.. .|+.+..+..+
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 887653321 1122222 22221111222222333444445667888887655 56666665543
No 415
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=74.75 E-value=7.6 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 289 PLFSLGSLFIKEGKAVDAESVFSRILK 315 (510)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (510)
+|+.+-..|.+.|++++|.++|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788889999999999999998754
No 416
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.71 E-value=15 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 010446 459 PMLHLGITLYHLNRDKEAEKLVL 481 (510)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~ 481 (510)
.+..+|-.+..+|++++|+..|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45778999999999999999955
No 417
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=72.22 E-value=29 Score=23.89 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446 334 SLAHAKCANGNAEEAVELYKKALRVIKDS 362 (510)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (510)
..|.-+-..|++++|+.+|.++++.+...
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 34445667899999999999999987764
No 418
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=72.15 E-value=28 Score=23.74 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (510)
...++..|...-..|++++|+.+|.++++.+....
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34567778888899999999999999999887765
No 419
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=72.11 E-value=11 Score=20.37 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 417 HLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
+|..+...+.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788899999999999999998765
No 420
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=71.40 E-value=1.1e+02 Score=30.24 Aligned_cols=70 Identities=27% Similarity=0.296 Sum_probs=47.3
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446 375 MRIDLAELLHI--VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (510)
Q Consensus 375 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (510)
++.+||++-.- ...-..++.+|++|+...+..++..| ..-|..+|..|.+.+++.+|+..+.++-+....
T Consensus 279 ALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 279 ALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554432 23356778999999999998876443 244667899999999999999999888776543
No 421
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.59 E-value=28 Score=34.34 Aligned_cols=120 Identities=17% Similarity=0.091 Sum_probs=67.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 010446 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 411 (510)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 411 (510)
...++..+..+|-.++|++ + .+++... -.+..+.|+++.|.++..++-.
T Consensus 617 rt~va~Fle~~g~~e~AL~-------~-------s~D~d~r-------Felal~lgrl~iA~~la~e~~s---------- 665 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALE-------L-------STDPDQR-------FELALKLGRLDIAFDLAVEANS---------- 665 (794)
T ss_pred hhhHHhHhhhccchHhhhh-------c-------CCChhhh-------hhhhhhcCcHHHHHHHHHhhcc----------
Confidence 3455666666666665544 3 2333222 2344567788877776555322
Q ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH------------HHH-HHHHhcCChHHHHH
Q 010446 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML------------HLG-ITLYHLNRDKEAEK 478 (510)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------------~la-~~~~~~g~~~~A~~ 478 (510)
..-|..||.+....|++..|.+++.++.+...-.+-.........+. ++| .+|...|+++++.+
T Consensus 666 ---~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 666 ---EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred ---hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHH
Confidence 23467788888888888888888888765432211100011111111 122 35667788888888
Q ss_pred HHHHHHH
Q 010446 479 LVLEALY 485 (510)
Q Consensus 479 ~~~~al~ 485 (510)
++.+.-+
T Consensus 743 lLi~t~r 749 (794)
T KOG0276|consen 743 LLISTQR 749 (794)
T ss_pred HHHhcCc
Confidence 8776633
No 422
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=70.46 E-value=14 Score=19.91 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446 331 AMCSLAHAKCANGNAEEAVELYKKALR 357 (510)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (510)
+|..+...+.+.|+++.|..+++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577788899999999999999988765
No 423
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.40 E-value=29 Score=23.14 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (510)
.+...|...=..|++++|+.+|.++++.+.....
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4666788888899999999999999998877653
No 424
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=70.07 E-value=1.2e+02 Score=30.04 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446 287 VLPLFSLGSLFIK--EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (510)
Q Consensus 287 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (510)
..++.+||.+-.. ...-..++.+|.+|+...+..+++.| ..-|..+|..+++.+++.+|+..+-++-.....-
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555554332 23346789999999999999876433 3456778999999999999999999988776653
No 425
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.05 E-value=1e+02 Score=32.62 Aligned_cols=185 Identities=14% Similarity=0.019 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhhc--c
Q 010446 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA--EEAVELYKKALRVIKDSN--Y 364 (510)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~--~ 364 (510)
-+..|+..|...|++++|++.+.+...-.. ..+......+-.+-..+...+.. +-..++-.-.++.....+ .
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee
Confidence 466789999999999999999998776321 01122223333344444444443 444444444433221110 0
Q ss_pred CCCCCh-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--------ccCHHHHH
Q 010446 365 MSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--------SKNFVEAE 435 (510)
Q Consensus 365 ~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~ 435 (510)
+..+.. .....-.....-|......+-++.|++.++...+.. . ......++..|.+ .++-+++.
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~----~---~~lht~ll~ly~e~v~~~~~~~~kg~e~~ 654 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT----S---TLLHTVLLKLYLEKVLEQASTDGKGEEAP 654 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc----c---hHHHHHHHHHHHHHHhhccCchhccccch
Confidence 001111 111111112223456677788889999887654321 1 1122222223322 22334555
Q ss_pred HH--HHHHHHHHHHHhCCCChh-------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 436 RL--LRICLDIMTKTVGPDDQS-------ISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 436 ~~--~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
+. .++..... .....-+|. ....+...+.++.++|+.++|+..|-.-+.
T Consensus 655 E~~~rekl~~~l-~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 655 ETTVREKLLDFL-ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhHHHHHHHHh-hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 55 33333322 221211221 134567788888999999999998876654
No 426
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=69.93 E-value=32 Score=23.50 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (510)
...++..|...-..|++++|+.+|.++++.+....
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34466677777889999999999999999987765
No 427
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=69.71 E-value=18 Score=20.49 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHH
Q 010446 163 AILDIIALGYVYIGDLKFVQSLLD 186 (510)
Q Consensus 163 ~~~~~l~~~~~~~g~~~~A~~~~~ 186 (510)
+.+..+|..+...|++++|+..++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356778999999999999999955
No 428
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.60 E-value=33 Score=23.53 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446 418 LLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (510)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (510)
+...|.-+-..|+|++|+.+|.++++.+...
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4445666778899999999999999988763
No 429
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.85 E-value=1.3e+02 Score=29.92 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=103.8
Q ss_pred hhCChHHHHHHHHHHHHhhhh-----cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC--------
Q 010446 174 YIGDLKFVQSLLDMMSGIVDS-----LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------- 240 (510)
Q Consensus 174 ~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 240 (510)
....|++|...|..+....+. +-..+|.....+..++.++..+|+.+-|..+.++++-.+...+.+.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 356688888888887776532 1134577777789999999999999999999999987776653221
Q ss_pred --------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH-HHcCChHHHHHHHH
Q 010446 241 --------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGKAVDAESVFS 311 (510)
Q Consensus 241 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~ 311 (510)
+.....+++..-......|-+..|.++++-.+.+- ......+...+..+| .+..+|.==++.++
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd-------p~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD-------PSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-------CcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11233445555566778899999999988877761 111222222222332 23334443344443
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Q 010446 312 RILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---AEEAVELYKKALRVIK 360 (510)
Q Consensus 312 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 360 (510)
..-.. .+.. .-|..... ..+|..|..... -+.|...+.+|+....
T Consensus 403 ~~e~~-n~l~--~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 403 EPENM-NKLS--QLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHhh-ccHh--hcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 33221 1110 11222221 235666666555 5677888888876643
No 430
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=68.23 E-value=22 Score=24.64 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446 461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (510)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 495 (510)
...|..+...|+.++|+.+|++++.+..+.+.-..
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33444455668999999999999999888766544
No 431
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=67.81 E-value=31 Score=23.50 Aligned_cols=33 Identities=21% Similarity=0.028 Sum_probs=25.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446 463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (510)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 495 (510)
.|.-....|++++|+.+|.++++..........
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~ 44 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALDYLLQALKAEK 44 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 344455679999999999999999988765443
No 432
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=67.49 E-value=1.2e+02 Score=29.13 Aligned_cols=138 Identities=17% Similarity=0.046 Sum_probs=78.4
Q ss_pred CcchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHH
Q 010446 283 SADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV-----ELYKKAL 356 (510)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-----~~~~~al 356 (510)
....+.-+..-|.-+++.|. -++|+..++.++... +.+.. +. +...... ...|.+|+ ..+-+..
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-----~yD~e---c~-n~v~~fv-Kq~Y~qaLs~~~~~rLlkLe 444 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-----NYDIE---CE-NIVFLFV-KQAYKQALSMHAIPRLLKLE 444 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-----cccHH---HH-HHHHHHH-HHHHHHHHhhhhHHHHHHHH
Confidence 34456666777888999988 788899988888752 12211 11 1111111 11222222 2222222
Q ss_pred HHHHhhccCCCCChHHHHHHHHH--HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010446 357 RVIKDSNYMSLDDSIMENMRIDL--AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434 (510)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 434 (510)
....+. +..+-...-...-+.| |..+..+|+|.++.-+-.-..++. | ...++..+|.+.....+|++|
T Consensus 445 ~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--------P-S~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 445 DFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--------P-SPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--------C-cHHHHHHHHHHHHHHhhHHHH
Confidence 222222 1111111112222334 445678999999987766555542 3 447888999999999999999
Q ss_pred HHHHHH
Q 010446 435 ERLLRI 440 (510)
Q Consensus 435 ~~~~~~ 440 (510)
..++..
T Consensus 515 ~~~l~~ 520 (549)
T PF07079_consen 515 WEYLQK 520 (549)
T ss_pred HHHHHh
Confidence 998874
No 433
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=67.45 E-value=34 Score=33.23 Aligned_cols=91 Identities=15% Similarity=0.071 Sum_probs=61.7
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---GRAKKAVEIYHRVITILELNRGTESA 284 (510)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (510)
.-|.-.+..+....|+..|.+++... +.....+.+.+.++.+. |+.-.|+.-...|+++ ++
T Consensus 379 ~egnd~ly~~~~~~~i~~~s~a~q~~--------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~ 442 (758)
T KOG1310|consen 379 TEGNDGLYESIVSGAISHYSRAIQYV--------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NP 442 (758)
T ss_pred hhccchhhhHHHHHHHHHHHHHhhhc--------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------Ch
Confidence 33444444556677777777777643 44456666777777654 4555565555566554 56
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (510)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (510)
....+++.|+.++...+++.+|+.....+.
T Consensus 443 s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 677889999999999999999998776543
No 434
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.38 E-value=57 Score=25.37 Aligned_cols=67 Identities=13% Similarity=0.025 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446 161 EVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (510)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (510)
.....+++++++....+. .+.+.+++...+ . ..+.....+++.++..+++.++|+.++.+.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 445677888888776554 455666666554 1 222334556788999999999999999999988875
No 435
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=67.20 E-value=42 Score=32.63 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhC---ChHHHHHHHHHHHHhhh
Q 010446 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG---DLKFVQSLLDMMSGIVD 193 (510)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 193 (510)
.++.....+...+..+....|+..|.+++.. .+.....+.+.+.++++.+ +.-.|+.-...++++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl-- 440 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQY----------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL-- 440 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhh----------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--
Confidence 3344444554445555677788888888766 6677777888888877644 333444433344333
Q ss_pred hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 010446 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI 230 (510)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 230 (510)
+|....+++.|+.++...+++.+|+.....+.
T Consensus 441 -----n~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 441 -----NPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred -----ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 36677779999999999999999998765443
No 436
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.31 E-value=1.6e+02 Score=30.19 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446 327 RVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (510)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (510)
..-.+....|.-....|++++|+.+|.-+-
T Consensus 412 ~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 412 FLREIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 344555666777778888888887776654
No 437
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.40 E-value=1.2e+02 Score=27.90 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 291 FSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (510)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (510)
.+-|.++...++|.++...+..+-..++.
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~Kq 90 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQ 90 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhh
Confidence 34578888888988888877766555543
No 438
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=63.55 E-value=1.1e+02 Score=27.29 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 010446 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (510)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (510)
|+.+|.+|..+ .|..+..++.||.++...|+.-.|+-+|-+++-. ..|. ..+..||..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67899999998 5777899999999999999999999999998853 3343 5566777777666
No 439
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.43 E-value=65 Score=27.47 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=45.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
+..+.+.+...+|+...+.-++. .|..+.....+-..+.-.|+|++|...++-+-.+.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVka----------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKA----------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc----------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 44567788888998888776665 66677777788888999999999999888776654
No 440
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.96 E-value=1.1e+02 Score=27.21 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=67.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (510)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
+.....|++-+|...++..+-.....- ...+.....+.-+.+++..++...|..+.-..++..+. ..++..
T Consensus 14 ~a~~~~~d~Yeahqm~RTl~fR~~~~K----~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~ek-----a~~ad~ 84 (312)
T KOG3024|consen 14 RASIELGDYYEAHQMYRTLVFRYTRQK----AHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEK-----AEVADS 84 (312)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH-----HHhhHh
Confidence 333455566666666555443322210 12233334444455555555555555554444433322 111111
Q ss_pred H---HHHHHHHHhhhcHHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010446 206 L---LHMGSMYSTLENYEKSM-LVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271 (510)
Q Consensus 206 ~---~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 271 (510)
. -+++.+....+.-+..+ .+.+++++...+. +.........+..+|..++..+++.+|..+|-.+
T Consensus 85 ~~~~anl~~ll~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 85 LLKVANLAELLGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 1 23333333333322222 3444455444332 2222344567788999999999999999888654
No 441
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=62.87 E-value=44 Score=22.86 Aligned_cols=31 Identities=16% Similarity=-0.015 Sum_probs=24.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010446 464 GITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (510)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 494 (510)
|.-.-..|++++|..+|.++++.+......+
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e 43 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQYFVPALHYE 43 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHhhC
Confidence 3334567999999999999999988866444
No 442
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.21 E-value=34 Score=32.70 Aligned_cols=121 Identities=17% Similarity=0.036 Sum_probs=71.5
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHH
Q 010446 298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377 (510)
Q Consensus 298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 377 (510)
+..|+.-.|-.-...++..+ +..|... ...+.+....|+|+.+...+..+-.+... .+. +..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-----~~~p~~i---~l~~~i~~~lg~ye~~~~~~s~~~~~~~s-----~~~-----~~~ 361 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-----QQDPVLI---QLRSVIFSHLGYYEQAYQDISDVEKIIGT-----TDS-----TLR 361 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-----CCCchhh---HHHHHHHHHhhhHHHHHHHhhchhhhhcC-----Cch-----HHH
Confidence 45677777766666666532 2334433 34577888999999999888776655321 111 223
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (510)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (510)
.+-......|++++|....+-.+. + ..+...+...-+......|-+++|..++++.+.+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~-------~-eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLS-------N-EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhc-------c-ccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 345666778899988877655432 1 1112222222333445566777787777777664
No 443
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.11 E-value=71 Score=24.59 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=54.9
Q ss_pred hcHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446 217 ENYEKSMLVYQRVINVLESR-YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (510)
Q Consensus 217 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (510)
|.-..-...+++++..+... .-.+++.....+...+.... ++.+.|..+... .. ....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~---~I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK---GI---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH---TT---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc---Cc---cHHHHHHHHHHHH
Confidence 44555567788888776432 11234555555555554322 777777765543 11 2345778888999
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 010446 296 LFIKEGKAVDAESVFSRIL 314 (510)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al 314 (510)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 444
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=61.77 E-value=1.5e+02 Score=28.10 Aligned_cols=140 Identities=7% Similarity=-0.005 Sum_probs=93.9
Q ss_pred HHhhCChHHHHHHHHHHHHhhhhcCCC--chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446 172 YVYIGDLKFVQSLLDMMSGIVDSLKDD--EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (510)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (510)
++.+.++++|..+-+..+.-....+.. +-..+.+|+.+...|...|+...-...+..-+... .++.+....+...+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN 213 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLIN 213 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHH
Confidence 345688999988876644332111111 12235567778888888888776666665554433 23344556667777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
.+-..|...+.|+.|.....++.-- . ...+...+...+.+|.+..-+++|..|.+++-+|+...
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 8888999999999988877665311 0 01223567778889999999999999999999998753
No 445
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=61.75 E-value=48 Score=22.54 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010446 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (510)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (510)
.+...|...-..|++++|+.+|.++++.+....
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 356677777788999999999999999987765
No 446
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.68 E-value=1.1e+02 Score=26.56 Aligned_cols=108 Identities=10% Similarity=0.059 Sum_probs=61.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhc-C-CCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446 126 KSMIMMGNKNDAIDLLQANYEAVKEQINA-G-NKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (510)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
...+..|+++.|+++..-+++.-....+. . +-..-.++-....+......|..-+. .++.....+.....-.+...+
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHH
Confidence 35578899999999999998762110000 0 00111222333344445555653222 123444444433333344456
Q ss_pred HHHHHHHHHHH---------hhhcHHHHHHHHHHHHHHHH
Q 010446 204 AILLHMGSMYS---------TLENYEKSMLVYQRVINVLE 234 (510)
Q Consensus 204 ~~~~~l~~~~~---------~~g~~~~A~~~~~~al~~~~ 234 (510)
..+-..|..+. ..++...|+.++++|+++..
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 66667777773 55788899999999998753
No 447
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.60 E-value=1.2e+02 Score=27.06 Aligned_cols=140 Identities=14% Similarity=0.060 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc-----chHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHH
Q 010446 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA-----DLVLPLFSLG-SLFIKEGKAVDAESVFSRILKIYTK 319 (510)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~ 319 (510)
..+-.-+....-..||..|++.++++++..........+ +.-..+..+| .++.+++++.+.+.+.-+-.+.-++
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 344455666777789999999999999887332111111 2222333333 5678899999888877665543222
Q ss_pred HcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH-HHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLE 397 (510)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (510)
. .+.+.. .-...|.+.|++....+.-..=+..-. +..-+. ...+-..+-.++.-.|.+++|+++..
T Consensus 116 l----PpkIle---LCILLysKv~Ep~amlev~~~WL~~p~-----Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 116 L----PPKILE---LCILLYSKVQEPAAMLEVASAWLQDPS-----NQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred C----CHHHHH---HHHHHHHHhcCHHHHHHHHHHHHhCcc-----cCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 1 233322 234458888998877776555444311 111111 11112234445556899999998863
No 448
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=60.88 E-value=71 Score=28.54 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 010446 222 SMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 299 (510)
Q Consensus 222 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 299 (510)
|..+|.+|..+. |.....++.+|.++...|+.-.|+-+|-+++-. ..|. ..+..+|...+..
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 678999999885 566788999999999999999999999998854 2333 5667777777766
No 449
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.98 E-value=1.3e+02 Score=26.89 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-----hHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-----LLVTSLLGM-AKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
.+-.-+....-..||..|+..++++++........+.+ +.-.++..+ ..++..+|++.+.+...-+-.+.-++.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34555667777889999999999999876332111111 222223333 246778899999888776655543322
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH-----HHHHCCCHHHHHHHHH
Q 010446 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH-----AKCANGNAEEAVELYK 353 (510)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-----~~~~~g~~~~A~~~~~ 353 (510)
+ ..++-.-...|.+.|++....+.-..-+.- +++.... -|..++. ++.=.|.+++|+++..
T Consensus 117 ----P---pkIleLCILLysKv~Ep~amlev~~~WL~~------p~Nq~lp-~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 ----P---PKILELCILLYSKVQEPAAMLEVASAWLQD------PSNQSLP-EYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ----C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC------cccCCch-hhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 1 233333345688889988777666554442 2222211 1444444 4455899999999874
No 450
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.44 E-value=27 Score=23.88 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKE 150 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 150 (510)
..++..|...-..|++++|+.+|.++++.+..
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34666777777889999999999999988654
No 451
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=58.68 E-value=45 Score=26.81 Aligned_cols=111 Identities=19% Similarity=0.142 Sum_probs=66.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc----cCC-------------------------CCChHHHHHHHHHHHHH
Q 010446 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSN----YMS-------------------------LDDSIMENMRIDLAELL 383 (510)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~-------------------------~~~~~~~~~~~~la~~~ 383 (510)
...+......|+.++|...+.++........ .+. ..+..........++-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 4567777889999999999999887655320 000 00122233456678888
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 384 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
.+.|+...|.+.++.+-.-..-..-.-.-.........+..+...|++.+|...+..+++
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999999988765421000000000112233445678889999999999999998876
No 452
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.95 E-value=98 Score=30.85 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=36.4
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (510)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (510)
..+.|+++.|.++..++-. ..-|..||......|++..|.+++.++...
T Consensus 647 al~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4567888887776655422 244677899999999999999999888653
No 453
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=57.92 E-value=28 Score=28.88 Aligned_cols=47 Identities=19% Similarity=-0.016 Sum_probs=39.8
Q ss_pred CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497 (510)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 497 (510)
...|....++.++..-|..+|+++-|....+++++-..+..|.+||+
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~ 180 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPD 180 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccC
Confidence 45677888899999999999999999999999999999999999865
No 454
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=57.12 E-value=2.5e+02 Score=29.36 Aligned_cols=245 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHH
Q 010446 132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS 211 (510)
Q Consensus 132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (510)
|.-++-+.-++.-+.+ .+.....+..|..++...|++++-...-.++.++. +..|.+..-|..--.
T Consensus 93 ~~~~~ei~t~~ee~ai----------~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~----pl~~~lWl~Wl~d~~ 158 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAI----------NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA----PLPPHLWLEWLKDEL 158 (881)
T ss_pred ccchhHHHHHHHHhcc----------cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc----CCChHHHHHHHHHHH
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 010446 212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 291 (510)
Q Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 291 (510)
.....++-.++...|++++.-+... +.....+......+..+...++++.-...+.+++...-.... ........+.
T Consensus 159 ~mt~s~~~~~v~~~~ekal~dy~~v--~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~ 235 (881)
T KOG0128|consen 159 SMTQSEERKEVEELFEKALGDYNSV--PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYR 235 (881)
T ss_pred hhccCcchhHHHHHHHHHhcccccc--hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHH
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010446 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA---HAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (510)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (510)
..-..|...-..++-+.++...+.. +-+.......+.... .......+++.|..-+.+.+...... ...
T Consensus 236 E~e~~~l~n~~~~qv~a~~~~el~~-----~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~---~q~ 307 (881)
T KOG0128|consen 236 EFEVTYLCNVEQRQVIALFVRELKQ-----PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERL---VQK 307 (881)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhc-----cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHH---hhh
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (510)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (510)
.+.....+.++.......|....-...++++..
T Consensus 308 ~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 308 EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
No 455
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=57.01 E-value=91 Score=24.24 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=37.1
Q ss_pred HHHHH-HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Q 010446 121 LFNEV-KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSG 190 (510)
Q Consensus 121 l~~~~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 190 (510)
+++.+ ..+..+|+-++--+.+..... +....+..+..+|.+|...|+..++.+++.+|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k----------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK----------NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH---------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh----------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33444 445566665555444444322 1445677899999999999999999999988764
No 456
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.77 E-value=1.3e+02 Score=26.03 Aligned_cols=102 Identities=11% Similarity=0.087 Sum_probs=59.9
Q ss_pred HHhhCChHHHHHHHHHHHHhhhhcCCCc----h-HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010446 172 YVYIGDLKFVQSLLDMMSGIVDSLKDDE----P-LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (510)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (510)
.+..|+++.|+.+.+.+++..-..++.. | .++.-....+......|+.-+ .++.+.+........-.+...+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e--~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVE--PYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHhcCCCChHHHHH
Confidence 3578999999999999988654333221 1 122223334444455554222 12223222222222233345666
Q ss_pred HHHHHHHHH---------hhcCCHHHHHHHHHHHHHHH
Q 010446 247 SLLGMAKVL---------GSIGRAKKAVEIYHRVITIL 275 (510)
Q Consensus 247 ~~~~la~~~---------~~~g~~~~A~~~~~~al~~~ 275 (510)
.+...|..+ ...++...|+.++++|+.+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
Confidence 777778877 35678889999999999984
No 457
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=56.75 E-value=1e+02 Score=24.82 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 010446 343 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422 (510)
Q Consensus 343 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 422 (510)
++-+-|...++..+... +.....-+...+...-...|.+.+|.+++.+.++.- ...+...+|..++
T Consensus 71 ~N~eLa~~tLEnLvt~s--------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~ 136 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS--------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARIN 136 (220)
T ss_pred CcHHHHHHHHHHHHHcc--------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHH
Confidence 45555666666644331 112222233344455567899999999999988753 3345667777888
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
.|.....+-.--+.--++..+...-...+..|..+.+-...|..-.+.|...+|++.++..+.
T Consensus 137 wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 137 WCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 877765432222222222222222223455666666555666666788999999999988765
No 458
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.08 E-value=1.1e+02 Score=31.33 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHH
Q 010446 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK---EGKAVDAESVFSRILKIYT 318 (510)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~ 318 (510)
.....+..++-..|....+|+.-+++.+..-.+-... +..+.....+..+..+.+ -|+-++|+...-.+++.
T Consensus 198 VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~---~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~-- 272 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTL---KVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK-- 272 (1226)
T ss_pred ccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchh---hhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh--
Confidence 3455667778888999999988777665543331000 000111111222333333 46677777766665552
Q ss_pred HHcCCCChHHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC-
Q 010446 319 KVYGENDGRVGMAMCSLAHAKC---------ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR- 388 (510)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 388 (510)
. |+-.| ..++..|.+|- ..+..+.|+++|+++.+.... . ..=.|++.++...|+
T Consensus 273 -e-g~vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~---------~--~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 273 -E-GPVAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL---------E--YSGINLATLLRAAGEH 336 (1226)
T ss_pred -c-CCCCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch---------h--hccccHHHHHHHhhhh
Confidence 1 22223 33444455543 356678899999999876221 1 111567777776664
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH---HhccCHHHHHHHHHHHHH
Q 010446 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY---SRSKNFVEAERLLRICLD 443 (510)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~ 443 (510)
++...++-.-++.+..-............|...|..+ .-.+++.+|+..-+...+
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhc
Confidence 3444443333333221111111122222232333222 234677777766665554
No 459
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=55.99 E-value=63 Score=22.11 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (510)
...++..+...-..|+|++|..+|..+++.+....
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~ 40 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGV 40 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 34466677777888999999999999999887754
No 460
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=55.39 E-value=2e+02 Score=27.70 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=45.1
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010446 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418 (510)
Q Consensus 339 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 418 (510)
+...|++.-|...|+-.+..+ ++.+... ...-..+...++-..|..+|+.++...... ....+|
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f-------~d~~~y~---~kyl~fLi~inde~naraLFetsv~r~~~~------q~k~iy 505 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKF-------PDSTLYK---EKYLLFLIRINDEENARALFETSVERLEKT------QLKRIY 505 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhC-------CCchHHH---HHHHHHHHHhCcHHHHHHHHHHhHHHHHHh------hhhHHH
Confidence 455677777777777776653 2232222 223344556677777777777776654332 223344
Q ss_pred HHHHHHHHhccCHHHHHHH
Q 010446 419 LNLAASYSRSKNFVEAERL 437 (510)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~ 437 (510)
..+...-..-|+...+..+
T Consensus 506 ~kmi~YEs~~G~lN~v~sL 524 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSL 524 (660)
T ss_pred HHHHHHHHhhcchHHHHhH
Confidence 4444444445555444443
No 461
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.00 E-value=57 Score=25.68 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 176 (510)
+.++..+...+..|++.-|.++.+.++.. +|++..+....+.++...|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~a----------dp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFA----------DPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CCCcHHHHHHHHHHHHHHH
Confidence 44777888899999999999999998876 6666666666666665544
No 462
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.90 E-value=1.7e+02 Score=26.86 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 166 DIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
..-|.++...|+|.+....+..+....
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~ 88 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRF 88 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHH
Confidence 345788888899988888887766544
No 463
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=53.62 E-value=69 Score=21.83 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=23.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 010446 420 NLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (510)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (510)
..|.-.-..|++++|+.+|.++++.+....
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344556678999999999999999887754
No 464
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=53.34 E-value=1.4e+02 Score=26.44 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=53.3
Q ss_pred HHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 117 QLLELFNEV-KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 117 ~~~~l~~~~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
.+..+.... ..+...++++.|....++.+.+ .|+.+.-+...|.+|.+.|.+.-|+.-++......
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l----------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL----------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh----------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 344444444 4568889999999999999887 77778888889999999999999999998866655
No 465
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=53.33 E-value=71 Score=21.87 Aligned_cols=28 Identities=7% Similarity=-0.139 Sum_probs=22.0
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010446 467 LYHLNRDKEAEKLVLEALYIREIAFGKD 494 (510)
Q Consensus 467 ~~~~g~~~~A~~~~~~al~~~~~~~~~~ 494 (510)
....|++++|..+|..+++.+......+
T Consensus 16 ~d~~~~y~eA~~~Y~~~i~~~~~~~k~e 43 (75)
T cd02677 16 KEEEGDYEAAFEFYRAGVDLLLKGVQGD 43 (75)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccC
Confidence 3455999999999999999988765433
No 466
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=53.05 E-value=71 Score=21.84 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010446 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (510)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (510)
...++..|...-..|++++|+.+|.++++.+....
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34467778888899999999999999999887765
No 467
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.03 E-value=2.6e+02 Score=29.91 Aligned_cols=183 Identities=15% Similarity=0.044 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcH--HHHHHHHHHHHHHHHH----hc
Q 010446 164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENY--EKSMLVYQRVINVLES----RY 237 (510)
Q Consensus 164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~----~~ 237 (510)
-+..|+..|...|++++|++++.....-.. +.++.....+-.+-......+.. +-..++-.-.++.... ++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~---~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS---DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc---ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 356788889999999999999887665321 01111111122222333333332 3333332222221100 00
Q ss_pred CCCChhHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH--------cCChHHHHH
Q 010446 238 GKTSILLVTS-LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK--------EGKAVDAES 308 (510)
Q Consensus 238 ~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~ 308 (510)
..+++..+.. -...-.-|......+-++.|++.++...+.. .......++..|.. .++-+++.+
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~-------~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E 655 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT-------STLLHTVLLKLYLEKVLEQASTDGKGEEAPE 655 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc-------chHHHHHHHHHHHHHHhhccCchhccccchh
Confidence 0111101111 1111223456677788888888887664321 11222223333322 223334555
Q ss_pred H--HHHHHHHHHHHcCCCChH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446 309 V--FSRILKIYTKVYGENDGR-------VGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (510)
Q Consensus 309 ~--~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (510)
. .++.....+.. ..-+|. ....+...+.++.+.|+.++|+..|-..+.
T Consensus 656 ~~~rekl~~~l~~s-~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 656 TTVREKLLDFLESS-DLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHhhhh-cccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 4 33333322221 111221 134466678888899999999998877654
No 468
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=51.49 E-value=1.8e+02 Score=27.92 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 010446 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAV 148 (510)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 148 (510)
..+...++.+..+...|++.+|+..|+..|..+
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i 234 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSI 234 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 345556778888999999999999999988764
No 469
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=49.64 E-value=2.8e+02 Score=27.73 Aligned_cols=314 Identities=12% Similarity=0.012 Sum_probs=167.0
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHH-H
Q 010446 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL-L 207 (510)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~ 207 (510)
...++..+....++.+....-. ..|..-..|...+..-.+.|..+.+.+.|++++... |.....| .
T Consensus 52 i~~~~~~~~~~~~r~~y~~fL~------kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-------p~SvdlW~~ 118 (577)
T KOG1258|consen 52 IQENDSIEDVDALREVYDIFLS------KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-------PLSVDLWLS 118 (577)
T ss_pred HhccCchhHHHHHHHHHHHHHh------hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-------hhHHHHHHH
Confidence 3444444444555554444321 156666677888888899999999999999988765 3222222 2
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 010446 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (510)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (510)
.++.+-...|+.+.-...|++|.......+-. ...+-..-..-..++++..-...|++.+++-... .
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S-----~~lWdkyie~en~qks~k~v~~iyeRileiP~~~--------~ 185 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLS-----DPLWDKYIEFENGQKSWKRVANIYERILEIPLHQ--------L 185 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhc-----cHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhH--------h
Confidence 34444446678888778888887765332211 1122222233356677777777777777652211 0
Q ss_pred HHHHH-HHHHHHH-----cCChHHHHHHHHHHHH---------------HHHHHcCCCChHHHHHHHHHH-------HHH
Q 010446 288 LPLFS-LGSLFIK-----EGKAVDAESVFSRILK---------------IYTKVYGENDGRVGMAMCSLA-------HAK 339 (510)
Q Consensus 288 ~~~~~-la~~~~~-----~g~~~~A~~~~~~al~---------------~~~~~~~~~~~~~~~~~~~la-------~~~ 339 (510)
..++. .-..... .-..+++...-..... ..-+......+........+. .++
T Consensus 186 ~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~ 265 (577)
T KOG1258|consen 186 NRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVY 265 (577)
T ss_pred HHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHH
Confidence 11100 0000000 1112222211111110 000000000111111111111 112
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 010446 340 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 419 (510)
Q Consensus 340 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 419 (510)
.......+....++..+...-. ...+....-...|......-...|+++...-.|++++--+. .....|.
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYf--hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWi 335 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYF--HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWI 335 (577)
T ss_pred HhhHhHHHHHHhhhhhcccccc--ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHH
Confidence 2222222233333332221110 01222333345666777777889999999999999876542 2345677
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (510)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (510)
..+......|+.+-|...+..+.++. .+....+...-+..-...|++..|..+++...+
T Consensus 336 ky~~~m~~~~~~~~~~~~~~~~~~i~-------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 336 KYARWMESSGDVSLANNVLARACKIH-------VKKTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHHHHHHHcCchhHHHHHHHhhhhhc-------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 77888888899999988888887764 333444456667778889999999999998765
No 470
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=49.62 E-value=2.8e+02 Score=27.74 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=65.2
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 010446 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE-CL 400 (510)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 400 (510)
++.++....... ++..+...++...+.-....++.. .+ ....+..+|+......|....+...+.+ +.
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~-------~~---~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV-------NP---ENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc-------Cc---ccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 445566555544 677777788887777777766655 12 2233557788887777766665554443 32
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (510)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (510)
...... ...-......+ .++......|+..++....+++.++.
T Consensus 130 ~~~~~~-~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 130 WLSPDN-AEFLGHLIRFY-QLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred hcCcch-HHHHhhHHHHH-HHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 221100 00001111223 36888888899999988888888764
No 471
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=48.49 E-value=4.1e+02 Score=29.29 Aligned_cols=63 Identities=22% Similarity=0.185 Sum_probs=34.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHH------HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446 335 LAHAKCANGNAEEAVELYKKA------LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (510)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (510)
-|..|...|+.++|+..|+.+ +.+..+. ..........-..|+.-+..++++-+|-+...+.+
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 355666677777777766553 3333321 22222222223556666777777777777665544
No 472
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=48.08 E-value=4.2e+02 Score=29.25 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHH------HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446 293 LGSLFIKEGKAVDAESVFSRIL------KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (510)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (510)
-|..|...|+.++|+..|+.+. .+..+.. .........-..|+.-+..++++-+|-+.....+
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLS-EGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3445555566666665554332 2222221 1111222223455666667777777766665544
No 473
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=47.17 E-value=3.1e+02 Score=27.49 Aligned_cols=109 Identities=11% Similarity=0.087 Sum_probs=72.5
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH-HHHH
Q 010446 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR-ILKI 316 (510)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~ 316 (510)
++.++....... ++..+...+....+.-....++.. ++....+..+|+......|....+...+.+ +...
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 445566655555 777788888887777777777664 566778888998888877777666655544 3332
Q ss_pred HHHHcCCCChH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446 317 YTKVYGENDGR---VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (510)
Q Consensus 317 ~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (510)
. +.... ....++.++......|+..++.....++..+..
T Consensus 132 ~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 132 S-----PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred C-----cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 1 11111 111223368888889999999999988887744
No 474
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=46.60 E-value=77 Score=26.31 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (510)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (510)
...|.....+.++..-|...|+++-|+...+++++-..+..|.+||+
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~ 180 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPD 180 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccC
Confidence 35667778899999999999999999999999999888888888775
No 475
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.40 E-value=88 Score=20.38 Aligned_cols=39 Identities=8% Similarity=0.277 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 010446 111 MNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVK 149 (510)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~ 149 (510)
+....-++..-+..+..+...|++++|.++..+...-..
T Consensus 16 lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 333444454555667889999999999999998876543
No 476
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=44.11 E-value=2.6e+02 Score=25.67 Aligned_cols=57 Identities=11% Similarity=-0.067 Sum_probs=36.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (510)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (510)
.....++..+..+-++....++++ .++-+.++..++.-- .--..+|+++++++++..
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeI----------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEI----------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhc----------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence 334455666677777777778877 677777776666432 223456777777776654
No 477
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=43.96 E-value=3.2e+02 Score=26.79 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhcCC
Q 010446 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGK 239 (510)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 239 (510)
+...|..........+.+.+-...|.+++... ++.| .+|..-+.-.+..+ +.+.|...+.+++.. .+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H----p~~~---dLWI~aA~wefe~n~ni~saRalflrgLR~-----np 171 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH----PNNP---DLWIYAAKWEFEINLNIESARALFLRGLRF-----NP 171 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCc---hhHHhhhhhHHhhccchHHHHHHHHHHhhc-----CC
Confidence 44555555555555666777777777777654 2333 33444444444444 377788888888775 34
Q ss_pred CChhHHHHHHHH
Q 010446 240 TSILLVTSLLGM 251 (510)
Q Consensus 240 ~~~~~~~~~~~l 251 (510)
+.|.....++.+
T Consensus 172 dsp~Lw~eyfrm 183 (568)
T KOG2396|consen 172 DSPKLWKEYFRM 183 (568)
T ss_pred CChHHHHHHHHH
Confidence 445444444433
No 478
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=43.28 E-value=1.8e+02 Score=23.57 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=66.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh
Q 010446 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412 (510)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 412 (510)
..+-..-...|.+.+|.+++.+.++.- .......+|..++.+.....+-.--++--++..+.......+..|
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~nk--------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kP 168 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIENK--------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKP 168 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCc
Confidence 334445567899999999999988762 344455677777777766544322222222333333333345567
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (510)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (510)
..+.+-...+..-.+.|.-.+|+..++..+.
T Consensus 169 FWatAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 169 FWATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 7766666677777888999999999988776
No 479
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.06 E-value=3.1e+02 Score=26.01 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=39.3
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHH--HHHhhhcHHHHHHHHH
Q 010446 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS--MYSTLENYEKSMLVYQ 227 (510)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~ 227 (510)
.+..++..++|..|...++.+.... +.+........+..+.. .++..-++++|.+.++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~--l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRL--LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc--cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4557789999999999999987652 11222233333445544 4566778899999988
No 480
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.67 E-value=58 Score=16.95 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.1
Q ss_pred CChhHHHHHHHHHHHH
Q 010446 132 GNKNDAIDLLQANYEA 147 (510)
Q Consensus 132 g~~~~A~~~~~~al~~ 147 (510)
|+.+.|...|++++..
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5678888999998876
No 481
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.59 E-value=2.1e+02 Score=27.96 Aligned_cols=79 Identities=10% Similarity=-0.074 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHhhhhcCC
Q 010446 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD-LKFVQSLLDMMSGIVDSLKD 197 (510)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~ 197 (510)
..+..-+....+.+.+.+--..|.+++.. +|..+..|..-+.-.+..+. .+.|..++.++++.. +
T Consensus 106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~----------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n----p 171 (568)
T KOG2396|consen 106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAK----------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN----P 171 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHh----------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC----C
Confidence 33555556666667788888999999988 88888888888877777665 888899999988764 5
Q ss_pred CchHHHHHHHHHHH
Q 010446 198 DEPLLDAILLHMGS 211 (510)
Q Consensus 198 ~~~~~~~~~~~l~~ 211 (510)
+.|.+...++.+-.
T Consensus 172 dsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 172 DSPKLWKEYFRMEL 185 (568)
T ss_pred CChHHHHHHHHHHH
Confidence 66666555554433
No 482
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.52 E-value=3.4e+02 Score=25.75 Aligned_cols=58 Identities=16% Similarity=0.011 Sum_probs=40.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH--HcCChHHHHHHHH
Q 010446 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH--IVGRGQEGRELLE 397 (510)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~ 397 (510)
.+...+..++|..|...|..+.... .+++.......+..++..|. ..-++++|.+.++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~-----l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRL-----LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc-----cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4556788999999999999988652 12333333455566666665 5667889999988
No 483
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=38.96 E-value=67 Score=24.19 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497 (510)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 497 (510)
..+...|..|...|+.+.|.-+|-+.+.+...+ +.||+
T Consensus 39 ~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki--~~Hpd 76 (115)
T PF08969_consen 39 NKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI--PKHPD 76 (115)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH--CCSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hcCcc
Confidence 445777889999999999999999999999444 34443
No 484
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=37.71 E-value=3.4e+02 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010446 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (510)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 491 (510)
+.+++.+|..+...+++.+|+.+++.|....+...
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 44566677777778899999999999988776653
No 485
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.60 E-value=2.5e+02 Score=23.59 Aligned_cols=118 Identities=18% Similarity=0.098 Sum_probs=61.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-
Q 010446 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE- 410 (510)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 410 (510)
++..+......|++++|...++++.+...+.+..-...|.. +.-|.+-..+..|.+|..++.-.-.- ....+.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel----~~ag~~~~a~QEyvEA~~l~~~l~~~--~~ps~~E 105 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPEL----YFAGFVTTALQEYVEATLLYSILKDG--RLPSPEE 105 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHhhcchHHHHHHHHHHHHHHhcC--CCCCHHH
Confidence 44455667788999999999999988776542111112221 11223333344455555544321111 000000
Q ss_pred --ChhHHHHHHH----------HHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhh
Q 010446 411 --HPSFVTHLLN----------LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456 (510)
Q Consensus 411 --~~~~~~~~~~----------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 456 (510)
-|. ...... ........|++++|...+.-+-.++.....-+-|..
T Consensus 106 L~V~~-~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~ 162 (204)
T COG2178 106 LGVPP-IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKA 162 (204)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 011 111111 222345678999999999888887776655444443
No 486
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=36.14 E-value=75 Score=17.20 Aligned_cols=27 Identities=15% Similarity=-0.053 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 010446 459 PMLHLGITLYHL----NRDKEAEKLVLEALY 485 (510)
Q Consensus 459 ~~~~la~~~~~~----g~~~~A~~~~~~al~ 485 (510)
+...+|..|..- .+.++|..+++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 456777776642 378899999998865
No 487
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=35.82 E-value=3.2e+02 Score=24.38 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (510)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (510)
.......++=..+...++++.|..+.++.+.+ .|....-...-|.+|.+.|.+.-|+.-+...++.+
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 34566677778899999999999999999887 34445556678999999999999999888876653
No 488
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=35.34 E-value=3.9e+02 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.010 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010446 459 PMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (510)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 488 (510)
+++..|......+++.+++..++.|....+
T Consensus 254 A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~ 283 (361)
T cd09239 254 AHLHMGKQSEEQQKMGERVAYYQLANDKLE 283 (361)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667888889888888877543
No 489
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=34.78 E-value=3e+02 Score=23.74 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=46.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH
Q 010446 295 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374 (510)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 374 (510)
.-+.+.+...+|+...+.-++ ..|........+-.+++-.|++++|..-++-+-++ .++....+.
T Consensus 9 seLL~~~sL~dai~~a~~qVk--------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-------~p~~t~~a~ 73 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVK--------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-------SPQDTVGAS 73 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHh--------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc-------CcccchHHH
Confidence 345566778888877766554 23444445555667788899999999888877665 344444444
Q ss_pred HHHHHHHH
Q 010446 375 MRIDLAEL 382 (510)
Q Consensus 375 ~~~~la~~ 382 (510)
.|.++..+
T Consensus 74 lyr~lir~ 81 (273)
T COG4455 74 LYRHLIRC 81 (273)
T ss_pred HHHHHHHH
Confidence 44444433
No 490
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.73 E-value=1.6e+02 Score=27.75 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (510)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (510)
.+..++|.+|.+.+++++|+.+|++++.+..+
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 44567899999999999999999999998766
No 491
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=29.62 E-value=6.4e+02 Score=25.98 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=13.2
Q ss_pred HHHHHcCChhHHHHHHHH
Q 010446 126 KSMIMMGNKNDAIDLLQA 143 (510)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~ 143 (510)
..+.-.|+|+.|++++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 455678999999988876
No 492
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=29.48 E-value=4e+02 Score=25.06 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=48.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch-----HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 010446 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP-----LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES 235 (510)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 235 (510)
+.+-.+|.+.|+++-+...++...... ..+.+ ++....+.+|.+|....++.+|...+.+|......
T Consensus 181 NlL~~iY~Rl~~~~l~~n~lka~~~vs---~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFLKASKEVS---MPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHhccccc---ccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 456678899999998888877654411 12222 23344688999999999999999999999876544
No 493
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=1.5e+02 Score=27.46 Aligned_cols=101 Identities=17% Similarity=0.044 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC------C-----CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGT------E-----SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (510)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (510)
..+.-....++++.|..-|.+++......... + .........+++.+-...+.+..|+.....++.
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--- 303 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR--- 303 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc---
Confidence 45666788899999999998888776531110 0 111223455677777888888888776665554
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (510)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (510)
..+....+++..+..+....++++|++.++.+...
T Consensus 304 -----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 304 -----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred -----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 34556678888999999999999999999988765
No 494
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=29.07 E-value=3.6e+02 Score=22.94 Aligned_cols=101 Identities=14% Similarity=0.041 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010446 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (510)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (510)
+.+....+..+++.........+........+..+....+...++++.|..++...-.+. ...............-|.
T Consensus 99 ~~~~~~~l~~~il~~~~~~~~~~~~~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~--~~~~~~~~ki~~~f~~~l 176 (220)
T TIGR01716 99 NSEDLEFLGKELLERLKRYRELNRYRRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKIL--DPEDDLYERILFNFLKGI 176 (220)
T ss_pred CHHHHHHHHHHHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHHH
Q ss_pred HHHhccCHHHHHHHHHHHHHHHH
Q 010446 424 SYSRSKNFVEAERLLRICLDIMT 446 (510)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~ 446 (510)
+....|+..++.+..++++++.+
T Consensus 177 ~~y~~g~~~~~~~~i~~~i~~l~ 199 (220)
T TIGR01716 177 ILYKEGQKESGEEKIEQAIEIFD 199 (220)
T ss_pred HHHHcCCCcccHHHHHHHHHHHH
No 495
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.50 E-value=2.4e+02 Score=26.30 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010446 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (510)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (510)
.......++....+.+...-.+....+++.. ..+.......++..+-.+..+.++|.-+..++..-+.-.....
T Consensus 101 f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k------~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n 174 (422)
T KOG2582|consen 101 FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDK------MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKAN 174 (422)
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHH------hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccC
Q ss_pred CCCChhHHHHHHHH-HHHHHhccCHHHHHHHHHHHH
Q 010446 408 GKEHPSFVTHLLNL-AASYSRSKNFVEAERLLRICL 442 (510)
Q Consensus 408 ~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al 442 (510)
+..+|...-.|... |.+|...++++.|..+|+.++
T Consensus 175 ~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 175 PHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICV 210 (422)
T ss_pred CCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHH
No 496
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.41 E-value=2e+02 Score=19.74 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=19.7
Q ss_pred HHhccCHHHHHHHHHHHHHHHHH
Q 010446 425 YSRSKNFVEAERLLRICLDIMTK 447 (510)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~ 447 (510)
--..|++++|+.+|..+++.+..
T Consensus 16 eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hhHhhhHHHHHHHHHHHHHHHHH
Confidence 34568999999999999998766
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.34 E-value=7.7e+02 Score=26.46 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh------------hCChHHHHHH
Q 010446 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY------------IGDLKFVQSL 184 (510)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~ 184 (510)
++..-++.+..+...|++.+|++.|...+-...-..-........+.-+..++.-|.. .++.+.+
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~--- 1066 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ--- 1066 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH---
Confidence 3555667788889999999999999988754322111112223333344444433321 1122222
Q ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446 185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (510)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (510)
++ +...+....-.......++..--..+++.+++..|-.+..+.+++.
T Consensus 1067 ~E-lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~ 1114 (1202)
T KOG0292|consen 1067 LE-LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELA 1114 (1202)
T ss_pred HH-HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Confidence 11 1122222222333334445555667888899999988888887763
No 498
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=28.32 E-value=4.9e+02 Score=24.24 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=11.2
Q ss_pred hcHHHHHHHHHHHHHHHH
Q 010446 217 ENYEKSMLVYQRVINVLE 234 (510)
Q Consensus 217 g~~~~A~~~~~~al~~~~ 234 (510)
.....|..+|++|...++
T Consensus 135 ~~~k~A~~~fq~AAG~F~ 152 (345)
T cd09034 135 EDLKQAIKSLQKAAGYFE 152 (345)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777777765543
No 499
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.23 E-value=2.9e+02 Score=21.26 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh
Q 010446 391 EGRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469 (510)
Q Consensus 391 ~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 469 (510)
.=..++++++..+.... -.+++....++...+... +++.+.|..+.. + .-....+..|...|..+..
T Consensus 44 ~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~---~---~IG~~~AlfYe~~A~~lE~ 111 (125)
T smart00777 44 GLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYS---K---GIGTKLALFYEEWAQLLEA 111 (125)
T ss_pred hHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHH---C---CcchhhHHHHHHHHHHHHH
Confidence 33556666666543321 135666777777766543 335556665544 1 1233455667788999999
Q ss_pred cCChHHHHHHHHH
Q 010446 470 LNRDKEAEKLVLE 482 (510)
Q Consensus 470 ~g~~~~A~~~~~~ 482 (510)
.|++.+|.+.|+.
T Consensus 112 ~g~~~~A~~iy~~ 124 (125)
T smart00777 112 AGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHc
Confidence 9999999998864
No 500
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=26.56 E-value=2.9e+02 Score=26.18 Aligned_cols=55 Identities=9% Similarity=0.203 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446 222 SMLVYQRVINVLESRYGKTSI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (510)
Q Consensus 222 A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (510)
|..+..+|++..++....+.| .++.++..+|++|-.. -.+=..+|.+|-++..+.
T Consensus 330 a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~e--S~eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNE--SKEQEKAYKEAEKILKKA 388 (404)
T ss_dssp HHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSH--HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccc--hHHHHHHHHHHHHHHHHH
Confidence 556666666666555444445 2344444555444221 122345566666655443
Done!