Query 010447
Match_columns 510
No_of_seqs 261 out of 1469
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 8.4E-63 2.9E-67 513.9 53.4 428 77-508 4-451 (475)
2 1hr6_B Beta-MPP, mitochondrial 100.0 4.9E-58 1.7E-62 473.8 51.9 427 75-508 3-442 (443)
3 3hdi_A Processing protease; CA 100.0 5.2E-58 1.8E-62 470.5 50.9 406 79-501 2-411 (421)
4 1pp9_A Ubiquinol-cytochrome C 100.0 1.3E-57 4.4E-62 471.1 50.6 423 77-508 12-442 (446)
5 3eoq_A Putative zinc protease; 100.0 1.6E-57 5.4E-62 464.7 49.4 398 79-495 2-405 (406)
6 1pp9_B Ubiquinol-cytochrome C 100.0 1.7E-56 5.8E-61 461.6 52.9 420 75-503 20-439 (439)
7 3ami_A Zinc peptidase; alpha/b 100.0 2.1E-55 7.1E-60 454.5 47.1 413 76-502 4-430 (445)
8 3gwb_A Peptidase M16 inactive 100.0 2.4E-54 8.3E-59 444.9 44.9 408 76-500 11-427 (434)
9 3cx5_A Cytochrome B-C1 complex 100.0 1.4E-53 4.9E-58 438.6 46.3 412 80-508 2-427 (431)
10 3amj_B Zinc peptidase inactive 100.0 4.7E-53 1.6E-57 434.0 45.7 405 77-499 2-419 (424)
11 3d3y_A Uncharacterized protein 100.0 2.4E-48 8.4E-53 398.8 44.9 391 82-495 6-423 (425)
12 3go9_A Insulinase family prote 100.0 1.1E-46 3.6E-51 393.1 38.3 405 77-508 24-462 (492)
13 1q2l_A Protease III; hydrolase 100.0 1.8E-45 6.3E-50 414.1 40.7 406 75-497 17-442 (939)
14 3cww_A Insulysin, insulin-degr 100.0 1.2E-42 4.2E-47 393.0 37.5 404 75-495 31-456 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 1.7E-42 5.9E-47 391.8 32.6 403 77-497 36-487 (995)
16 3s5m_A Falcilysin; M16 metallo 100.0 9.7E-41 3.3E-45 374.0 36.7 406 75-495 83-588 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 7.5E-41 2.6E-45 334.7 28.1 346 88-502 1-351 (352)
18 1q2l_A Protease III; hydrolase 100.0 9.4E-37 3.2E-41 343.2 35.2 413 56-495 474-907 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 4.8E-35 1.6E-39 330.9 30.3 393 77-500 552-981 (995)
20 3cww_A Insulysin, insulin-degr 100.0 1.9E-33 6.7E-38 317.8 36.9 415 56-498 492-937 (990)
21 3s5m_A Falcilysin; M16 metallo 100.0 2.4E-29 8.1E-34 282.0 24.7 383 85-495 724-1174(1193)
22 3ih6_A Putative zinc protease; 99.9 7.1E-23 2.4E-27 186.7 21.6 175 303-495 19-195 (197)
23 3ih6_A Putative zinc protease; 98.3 1.5E-05 5.3E-10 71.3 15.3 160 98-265 23-192 (197)
24 3amj_B Zinc peptidase inactive 98.0 0.00014 4.7E-09 73.3 17.8 169 309-495 24-199 (424)
25 3hdi_A Processing protease; CA 98.0 0.00034 1.2E-08 70.4 19.3 167 309-495 22-193 (421)
26 3eoq_A Putative zinc protease; 98.0 0.0005 1.7E-08 68.8 19.9 165 309-494 22-191 (406)
27 3gwb_A Peptidase M16 inactive 97.9 0.00034 1.2E-08 70.6 17.8 167 309-495 34-206 (434)
28 3cx5_A Cytochrome B-C1 complex 97.9 0.00046 1.6E-08 69.5 18.7 163 309-495 21-189 (431)
29 3d3y_A Uncharacterized protein 97.9 0.00034 1.2E-08 70.3 17.0 173 309-495 23-210 (425)
30 3cx5_B Cytochrome B-C1 complex 97.8 0.00059 2E-08 66.8 17.5 164 309-494 11-176 (352)
31 1pp9_B Ubiquinol-cytochrome C 97.8 0.00053 1.8E-08 69.3 17.2 163 309-493 43-211 (439)
32 3ami_A Zinc peptidase; alpha/b 97.7 0.00091 3.1E-08 67.8 17.8 167 309-495 27-199 (445)
33 1hr6_B Beta-MPP, mitochondrial 97.7 0.0012 4E-08 66.9 18.3 166 96-265 243-426 (443)
34 1pp9_A Ubiquinol-cytochrome C 97.7 0.00097 3.3E-08 67.7 17.7 167 309-495 33-204 (446)
35 1hr6_A Alpha-MPP, mitochondria 97.7 0.0013 4.4E-08 67.4 17.3 165 309-494 25-194 (475)
36 3go9_A Insulinase family prote 96.4 0.046 1.6E-06 56.0 14.5 119 147-265 313-446 (492)
37 2v75_A Nuclear polyadenylated 23.4 2E+02 0.0068 21.4 5.6 44 437-480 26-70 (104)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=8.4e-63 Score=513.92 Aligned_cols=428 Identities=35% Similarity=0.554 Sum_probs=392.8
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEeec
Q 010447 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (510)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (510)
+.++.++|+||++|++.+.+.+.+++++++++|+.+|++...|++||++||+|+||.+++..++.+.++..|++++++++
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57899999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCCCCCh
Q 010447 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPE 235 (510)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~ 235 (510)
.+++.|.+++++++++.+|+++.+++.+|.|++++|+++|+.+.+|+++..++|..++.+.++..+|++ +|+++..|+.
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 999999999999999999999999999999999999999999999999988999999999999999987 9999999999
Q ss_pred HHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCC-CCCCCccCCCceEEe------cCCCC
Q 010447 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQ------ADSGD 308 (510)
Q Consensus 236 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~------~~~~~ 308 (510)
+.|++++.++|++||+++|+|+||+++++|+++++++++++++|+.||....+ ..+.+.+.++..++. .+.
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 241 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLP-- 241 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSC--
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCc--
Confidence 99999999999999999999999999999999999999999999999865443 212234444444444 344
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEE
Q 010447 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~ 388 (510)
+++++.++|++++ | ++++.+++.|++.|||++++||+|||||||+++||++||++.|++|+++++...+.+.|.|+++
T Consensus 242 ~~~~v~~~~~~~~-~-~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~ 319 (475)
T 1hr6_A 242 ELFHIQIGFEGLP-I-DHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGIS 319 (475)
T ss_dssp CCEEEEEEEECCC-T-TCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEE
T ss_pred cceEEEEEEecCC-C-CCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEE
Confidence 7899999999776 4 6789999999999999999999999999999999999999999999999998877788999999
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010447 389 GTTGSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTV 466 (510)
Q Consensus 389 ~~~~p~~~~~~~~~~~~~l~~l~~~--~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 466 (510)
+.++|+++.++++.+.+++.++.+. +++|++||+++|+.++.++....+++..+++.++++++.+|.+.+.+++.+.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 399 (475)
T 1hr6_A 320 LSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKI 399 (475)
T ss_dssp EEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999999999998752 35999999999999999999999999999999998776678777788899999
Q ss_pred hcCCHHHHHHHHHHHhcC----------CceEEEEcCCCCCCCHHHHHhHhh
Q 010447 467 EGVTAKDIASVAQKLLSS----------PLTMASYGDVINVPSYDAVSSKFK 508 (510)
Q Consensus 467 ~~vT~~di~~~a~~~l~~----------~~~~~v~G~~~~~p~~~~i~~~~~ 508 (510)
++||++||++++++++.. +++++++|+...+|+++++.+.+.
T Consensus 400 ~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 451 (475)
T 1hr6_A 400 EDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG 451 (475)
T ss_dssp HTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence 999999999999999975 789999999999999999988875
No 2
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=4.9e-58 Score=473.80 Aligned_cols=427 Identities=29% Similarity=0.457 Sum_probs=384.8
Q ss_pred CCCceEEEEcCCCcEEEEecCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeE
Q 010447 75 EPGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 153 (510)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 153 (510)
..+.++.++|+||++|++.+++.+ .+++.+++++|+..|++...|++|+++||+|+||++++..++.+.++..|+++++
T Consensus 3 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 3 QIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNA 82 (443)
T ss_dssp --CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEE
Confidence 346789999999999999887765 9999999999999999899999999999999999999999999999999999999
Q ss_pred eecceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCCC
Q 010447 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLL 232 (510)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~ 232 (510)
+++.+++.|.+++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.+++.+|++ +|+.+..
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTIL 162 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSS
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 9999889
Q ss_pred CChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC------CCccCCCceEEe-c
Q 010447 233 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP------KSVYTGGDYRCQ-A 304 (510)
Q Consensus 233 ~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~-~ 304 (510)
|+.+.|++++.++|++||+++|+|+|++++++| +++++++++++++|+.||....+... .+.+.++...+. +
T Consensus 163 g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
T 1hr6_B 163 GPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKEN 242 (443)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECT
T ss_pred CCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccC
Confidence 999999999999999999999999999999999 99999999999999999865433211 222333333332 4
Q ss_pred CCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcce
Q 010447 305 DSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGM 384 (510)
Q Consensus 305 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~ 384 (510)
+. +++++.++|..+. | ++++..++.|++.+|+++. ...|+|+|++++||++||++.|++|+++++...+.+.|.
T Consensus 243 ~~--~~~~v~~~~~~~~-~-~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~ 316 (443)
T 1hr6_B 243 TL--PTTHIAIALEGVS-W-SAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGL 316 (443)
T ss_dssp TC--SEEEEEEEEECCC-T-TCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEE
T ss_pred Cc--cceEEEEEEecCC-C-CCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceE
Confidence 45 7899999999986 4 7789999999999998743 244678889999999999999999999998877778899
Q ss_pred EEEEEEeC--cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHH
Q 010447 385 FGIQGTTG--SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHF 462 (510)
Q Consensus 385 ~~i~~~~~--p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 462 (510)
|.+++.++ |+++.++++.+.++++++++ ++++++||+++|+.++..+....+++..+++.++.+++.+|.+.+.+++
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 395 (443)
T 1hr6_B 317 WGMYIVTDSNEHNVRLIVNEILKEWKRIKS-GKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEV 395 (443)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred EEEEEEecCChhHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHH
Confidence 99999999 99999999999999999998 7799999999999999999999999999999998876557777677889
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCCHHHHHhHhh
Q 010447 463 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 508 (510)
Q Consensus 463 ~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~i~~~~~ 508 (510)
.+.|++||++||++++++|+. ++.+++++||...+|++++|..++.
T Consensus 396 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 442 (443)
T 1hr6_B 396 FEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442 (443)
T ss_dssp HHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHhccCCcEEEEECCcccCccHHHHHHHhc
Confidence 999999999999999999998 7899999999999999999988764
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=5.2e-58 Score=470.50 Aligned_cols=406 Identities=25% Similarity=0.391 Sum_probs=372.9
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEeecc
Q 010447 79 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (510)
Q Consensus 79 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (510)
++.++|+||++|++.+.+ .+.+++.+++++|+.+|++...|++||++||+|+||.+++..++.+.++..|+.++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 578999999999987776 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCCCCChH
Q 010447 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPES 236 (510)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~ 236 (510)
+++.|.+++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.+...+|++ +++++..|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred HhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC-CCccCCCceEEecCCCCCceEEE
Q 010447 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-KSVYTGGDYRCQADSGDQLTHFV 314 (510)
Q Consensus 237 ~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 314 (510)
.|++++.++|++||+++|.|+|++++++| ++ ++++++++++|+.||....+... .+.+.+.......+. +++++.
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~~v~ 238 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKET--EQAHLC 238 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCC--SEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCC--CceEEE
Confidence 99999999999999999999999999999 99 99999999999999876543322 223333333444666 899999
Q ss_pred EEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEEEEeCcc
Q 010447 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 394 (510)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~~~~~p~ 394 (510)
++|+.+. .++++.+++.|++.+||++ ++++||++||++.|++|+++++...+.+.|.|.+++.++|+
T Consensus 239 ~~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~ 305 (421)
T 3hdi_A 239 LGYPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHD 305 (421)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGG
T ss_pred EEEecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHH
Confidence 9999876 4779999999999999976 45999999999999999999988878888999999999999
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHH
Q 010447 395 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDI 474 (510)
Q Consensus 395 ~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di 474 (510)
++.++++.+.++++++++ ++++++||+++|+.++.++....+++..++..++...+..+...+.+++.+.|++||++||
T Consensus 306 ~~~~~~~~i~~~l~~l~~-~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv 384 (421)
T 3hdi_A 306 QLDDLVYSIQETTSALAE-KGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDV 384 (421)
T ss_dssp GHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHH
Confidence 999999999999999988 6799999999999999999999999999999998777767777778999999999999999
Q ss_pred HHHHHHHhcCCceEEEEcCCCCCCCHH
Q 010447 475 ASVAQKLLSSPLTMASYGDVINVPSYD 501 (510)
Q Consensus 475 ~~~a~~~l~~~~~~~v~G~~~~~p~~~ 501 (510)
+++|++++.++.+++++||..++|++.
T Consensus 385 ~~~a~~~~~~~~~~~vvgp~~~ip~~~ 411 (421)
T 3hdi_A 385 SRLAKILLSASPSISLINANGELPKAL 411 (421)
T ss_dssp HHHHHHHTTSCCEEEEEESSCSCCSCS
T ss_pred HHHHHHHcccCcEEEEECchhcCcchh
Confidence 999999997778999999999999864
No 4
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.3e-57 Score=471.11 Aligned_cols=423 Identities=27% Similarity=0.473 Sum_probs=383.0
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEeec
Q 010447 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (510)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (510)
+.++.++|+||++|++.+.+++.+++.+++++|+..|++...|++||++||+|+||++++..++.+.++..|++++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57789999999999998877889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCCCCCh
Q 010447 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPE 235 (510)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~ 235 (510)
.+++.|.+++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.+++.+|++ +|+.+..|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 9999999999
Q ss_pred HHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC----CCccCCCceEE-ecCCCCC
Q 010447 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP----KSVYTGGDYRC-QADSGDQ 309 (510)
Q Consensus 236 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~-~~~~~~~ 309 (510)
+.|++++.++|++||+++|+|+|++++++| +++++++++++++|+.|+....+..+ .+.+.++...+ .++. +
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 249 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGL--P 249 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTS--S
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecCCc--c
Confidence 999999999999999999999999999999 99999999999999999865433211 22233333333 3455 7
Q ss_pred ceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEEE
Q 010447 310 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG 389 (510)
Q Consensus 310 ~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~~ 389 (510)
++++.++|+.+. .++++..++.|++.+||++.+ +.| +|+|++++||++||++ |++|+++++...+.+.|.|.+++
T Consensus 250 ~~~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~~-glay~~~s~~~~~~~~g~~~i~~ 324 (446)
T 1pp9_A 250 LAHVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAATN-KLCQSFQTFNICYADTGLLGAHF 324 (446)
T ss_dssp SEEEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHHH-TCCSEEEEEEEECSSCEEEEEEE
T ss_pred ceEEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHhc-CCeEEEEEecccCCCCeEEEEEE
Confidence 899999999887 467899999999999987554 444 6789999999999964 78999999887777789999999
Q ss_pred EeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcC
Q 010447 390 TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGV 469 (510)
Q Consensus 390 ~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 469 (510)
.++|++..++++.+.++++++.+ + ++++||+++|..++.++....+++...++.++.+++.+|.+.+.+++.+.|++|
T Consensus 325 ~~~~~~~~~~~~~i~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~v 402 (446)
T 1pp9_A 325 VCDHMSIDDMMFVLQGQWMRLCT-S-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEV 402 (446)
T ss_dssp EECTTSHHHHHHHHHHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTC
T ss_pred EECHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcC
Confidence 99999999999999999999988 6 999999999999999999999999999999888775678777788899999999
Q ss_pred CHHHHHHHHHHHhc-CCceEEEEcCCCCCCCHHHHHhHhh
Q 010447 470 TAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 508 (510)
Q Consensus 470 T~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~i~~~~~ 508 (510)
|++||++++++|+. ++.+++++||...+|.++.+.+++.
T Consensus 403 t~edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 442 (446)
T 1pp9_A 403 DARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMF 442 (446)
T ss_dssp CHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTC
T ss_pred CHHHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhHH
Confidence 99999999999998 7899999999999999999988764
No 5
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-57 Score=464.69 Aligned_cols=398 Identities=19% Similarity=0.234 Sum_probs=363.7
Q ss_pred eEEEEcCCCcEEEEecCCC-CeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEeecc
Q 010447 79 TKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (510)
Q Consensus 79 ~~~~~L~NGl~v~~~~~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (510)
++.++|+||++|++.+++. +.+++.+++++|+.+|++...|++||++||+|+||++++..++.+.++..|+.+|++|+.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 4789999999999987775 799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCCCCChH
Q 010447 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPES 236 (510)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~ 236 (510)
+++.|.+++++++++.+|+++.+++ +|.|++++|+++|..+.+|++...++|...+.+.+++.+|++ ||+++..|+.+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999987 99999999999
Q ss_pred HhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCCC-CccCCCceEEe-cCCCCCceEE
Q 010447 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQ-ADSGDQLTHF 313 (510)
Q Consensus 237 ~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~v 313 (510)
.|++++.++|++||+++|.|+|++++++| ++++++.++++++|++||..+.+.... ....++...+. +.. +++++
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~~~ 238 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKA--RALYL 238 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTTC--SSEEE
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecCCc--cceEE
Confidence 99999999999999999999999999999 999999999999999998654332211 11222333333 333 68999
Q ss_pred EEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEEEEeCc
Q 010447 314 VLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGS 393 (510)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~~~~~p 393 (510)
.++|+.+. .++++.+++.|++.+||++ ++++||++||+ .|++|+++++...+.+.|.|.+++.++|
T Consensus 239 ~~~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~ 304 (406)
T 3eoq_A 239 VALFPGVA--YQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADP 304 (406)
T ss_dssp EEEEECCC--TTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECG
T ss_pred EEEecCCC--CCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCc
Confidence 99999887 4778999999999999986 45999999999 8999999999888888999999999999
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHH
Q 010447 394 DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKD 473 (510)
Q Consensus 394 ~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~d 473 (510)
++..++++.+.++++++++ +++|++||+++|+.++.++....+++..++..++...+.++.+.+.+++.+.|++||++|
T Consensus 305 ~~~~~~~~~i~~~l~~l~~-~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~d 383 (406)
T 3eoq_A 305 ARKGEVLAVLQEELDRLGR-EGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSRE 383 (406)
T ss_dssp GGHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHH
T ss_pred chHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHH
Confidence 9999999999999999988 679999999999999999999999999999999988887788888999999999999999
Q ss_pred HHHHHHHHhc-CCceEEEEcCCC
Q 010447 474 IASVAQKLLS-SPLTMASYGDVI 495 (510)
Q Consensus 474 i~~~a~~~l~-~~~~~~v~G~~~ 495 (510)
|+++|++|+. ++. ++++||..
T Consensus 384 v~~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 384 VNALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHHHTTTTTSCE-EEEEECCC
T ss_pred HHHHHHHhcCcccE-EEEECCCC
Confidence 9999999999 555 99999864
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=1.7e-56 Score=461.63 Aligned_cols=420 Identities=30% Similarity=0.504 Sum_probs=381.3
Q ss_pred CCCceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEe
Q 010447 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (510)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (510)
..++++.++|+||++|++.++..+.+++.+++++|+..+++...|++|+++||+++||++++..++.+.++..|++++++
T Consensus 20 ~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~ 99 (439)
T 1pp9_B 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVT 99 (439)
T ss_dssp -CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEE
T ss_pred cCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEE
Confidence 35788999999999999877767899999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCC
Q 010447 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAP 234 (510)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 234 (510)
++.+++.|.+++++++++.+|+++.+.+.+|.|++++|+++|+.+.++++...++|..++.+.++..+|+++++++..|+
T Consensus 100 t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 179 (439)
T 1pp9_B 100 STRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCP 179 (439)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCC
T ss_pred ecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999988999999999999999976788888899
Q ss_pred hHHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCCCCCCCccCCCceEEecCCCCCceEEE
Q 010447 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 314 (510)
Q Consensus 235 ~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 314 (510)
.+.|++++.++|++||+++|+|+|++++++|-+++++.++++++|+ ||....+....+++.++...+..+. +++++.
T Consensus 180 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 256 (439)
T 1pp9_B 180 DYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGD--SLVHAA 256 (439)
T ss_dssp GGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCC--SEEEEE
T ss_pred HHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCc--cceEEE
Confidence 9999999999999999999999999999999888999999999998 8765433222223334444444555 789999
Q ss_pred EEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEEEEeCcc
Q 010447 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 394 (510)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~~~~~p~ 394 (510)
++|+.+. .++++..++.|++.+|+++++|++|| ||+++||++||++.|++|+++++...+.+.|.|.+++.++|+
T Consensus 257 ~~~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~ 331 (439)
T 1pp9_B 257 LVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAA 331 (439)
T ss_dssp EEEECCC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGG
T ss_pred EEecCCC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHH
Confidence 9999886 47789999999999999999999888 788999999999999999999988777778999999999999
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHH
Q 010447 395 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDI 474 (510)
Q Consensus 395 ~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di 474 (510)
++.++++.+.+++.++++ ++++++||+++|+.++.++....+++..++..++..+..++.+.+.+++.+.|++||++||
T Consensus 332 ~~~~~~~~~~~~l~~l~~-~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv 410 (439)
T 1pp9_B 332 SAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADV 410 (439)
T ss_dssp GHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHH
Confidence 999999999999999998 6799999999999999999999999999999999887766777778999999999999999
Q ss_pred HHHHHHHhcCCceEEEEcCCCCCCCHHHH
Q 010447 475 ASVAQKLLSSPLTMASYGDVINVPSYDAV 503 (510)
Q Consensus 475 ~~~a~~~l~~~~~~~v~G~~~~~p~~~~i 503 (510)
++++++++.++.+++++|+..++|.++++
T Consensus 411 ~~~a~~~~~~~~~~~v~g~~~~~~~~~~~ 439 (439)
T 1pp9_B 411 INAAKKFVSGRKSMAASGNLGHTPFIDEL 439 (439)
T ss_dssp HHHHHHHHHSCEEEEEEECGGGCCCGGGC
T ss_pred HHHHHHHhcCCceEEEECCcccCCccccC
Confidence 99999999878889999999999998763
No 7
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=2.1e-55 Score=454.48 Aligned_cols=413 Identities=21% Similarity=0.297 Sum_probs=363.3
Q ss_pred CCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEe
Q 010447 76 PGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (510)
Q Consensus 76 ~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (510)
.++++.++|+||++|++.+++ .+.+.+.+++++|+..|++...|++|+++||+|+||++++..++.+.++..|+.++++
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~ 83 (445)
T 3ami_A 4 AASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAF 83 (445)
T ss_dssp GGGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEE
T ss_pred CcCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccc
Confidence 367899999999999987665 5799999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-HhhCChHHHHHHHHHHhhcCC-CCCCCCC
Q 010447 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAGYSG-ALANPLL 232 (510)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~-~~~~~p~~~~~~~l~~~~~~~-~~~~~~~ 232 (510)
|+.+.+.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++ ...++|...+.+.+++.+|++ ||+++..
T Consensus 84 t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~ 163 (445)
T 3ami_A 84 TTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVI 163 (445)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTT
T ss_pred cCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999 678899999999999999987 9999989
Q ss_pred CChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC--C-CccCCCc-eEEecCCC
Q 010447 233 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--K-SVYTGGD-YRCQADSG 307 (510)
Q Consensus 233 ~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~--~-~~~~~~~-~~~~~~~~ 307 (510)
|+.++|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+... . +...+.. ..+..+.
T Consensus 164 G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (445)
T 3ami_A 164 GWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA- 242 (445)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEEC-
T ss_pred CCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCC-
Confidence 999999999999999999999999999999999 99999999999999999865433221 1 1222222 2333445
Q ss_pred CCceEEEEEEecCCC--CCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecC-CCC-cc
Q 010447 308 DQLTHFVLAFELPGG--WHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNH-SG 383 (510)
Q Consensus 308 ~~~~~v~~~~~~~~~--~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~-~~~-~~ 383 (510)
+++++.++|..+.. |.+.++..++.+++.+|+++ +++||+++||++.|++|+++++... ..+ .+
T Consensus 243 -~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g 310 (445)
T 3ami_A 243 -ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQG 310 (445)
T ss_dssp -SSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCE
T ss_pred -CccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCC
Confidence 78899999998752 33378899999999999976 4599999999999999999998764 456 79
Q ss_pred eEEEEEEeCcch-HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHH
Q 010447 384 MFGIQGTTGSDF-VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHF 462 (510)
Q Consensus 384 ~~~i~~~~~p~~-~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 462 (510)
.|.+++.|.|+. .+++++.+.+++.++++ ++++++||+++|+.++.++....+++..++..++..++.++.....+++
T Consensus 311 ~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~-~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 389 (445)
T 3ami_A 311 LFILEGVPSKGVTIAQLETDLRAQVRDIAA-KGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRF 389 (445)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999884 89999999999999988 6799999999999999999999999999999999887754455567889
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCCHHH
Q 010447 463 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDA 502 (510)
Q Consensus 463 ~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~ 502 (510)
.+.|++||++||++++++||. ++.+++++||...+|..++
T Consensus 390 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~~~~~~~~ 430 (445)
T 3ami_A 390 YQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLPPDPKAQQ 430 (445)
T ss_dssp HHHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEECC------
T ss_pred HHHHHcCCHHHHHHHHHHHcCcCCeEEEEEccCccCccccc
Confidence 999999999999999999999 8899999999988887664
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=2.4e-54 Score=444.88 Aligned_cols=408 Identities=17% Similarity=0.192 Sum_probs=365.0
Q ss_pred CCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEe
Q 010447 76 PGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (510)
Q Consensus 76 ~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (510)
.++++.++|+||++|++.+++ .|.+++.+++++|+..+ +...|++||++||+++|+++++..++.+.++..|++++++
T Consensus 11 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~ 89 (434)
T 3gwb_A 11 NLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNG 89 (434)
T ss_dssp -CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEE
T ss_pred CCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEee
Confidence 368899999999999987776 48999999999999999 8899999999999999999999999999999999999999
Q ss_pred ecceeEEEEEeccCCC--hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCC
Q 010447 155 ASREQMGYSFDALKTY--VPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPL 231 (510)
Q Consensus 155 ~~~~~~~~~~~~~~~~--l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~ 231 (510)
++.+++.|.+++++++ ++.+|+++.+++.+|.|++++|+++|+.+.+++++..++|..++.+.++..+|++ +++.+.
T Consensus 90 t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
T 3gwb_A 90 AYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHAS 169 (434)
T ss_dssp ECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCT
T ss_pred ecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999998 9999999999999999999999999999999999999999999999999999987 999999
Q ss_pred CCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCCC-C-ccCCCceEEecCCCC
Q 010447 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-S-VYTGGDYRCQADSGD 308 (510)
Q Consensus 232 ~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 308 (510)
.|+.+.|++++.++|++||+++|+|+|++++++| ++++++.++++++|+.||....+..+. + ...++...+..+.
T Consensus 170 ~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (434)
T 3gwb_A 170 DGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPS-- 247 (434)
T ss_dssp TCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCS--
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCC--
Confidence 9999999999999999999999999999999999 999999999999999998764433221 1 2223344444555
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEE
Q 010447 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~ 388 (510)
.++++.++|..+. .+.++..++.|++.+||++ |++++||++||++.|++|+++++...+.+.+.|.++
T Consensus 248 ~~~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~ 315 (434)
T 3gwb_A 248 SQTSLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMIN 315 (434)
T ss_dssp SEEEEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEE
T ss_pred CceeEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEE
Confidence 7899999999886 4778999999999999975 256999999999999999999998888888999999
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC-CHHHHHHHHh
Q 010447 389 GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK-PVEHFLKTVE 467 (510)
Q Consensus 389 ~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~ 467 (510)
++++|+++.++++.+.+++.++.+ ++++++||+++|+.++.++....+++..++..++.... .+.+. ..+++.+.|+
T Consensus 316 ~~~~~~~~~~~~~~i~~~l~~l~~-~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~ 393 (434)
T 3gwb_A 316 LQTRAEMSEGTLKLVQDVFAEYLK-NGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGF-YNLPLSYLEDFMRQSQ 393 (434)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHH
T ss_pred EecchhhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH-cCCCccHHHHHHHHHH
Confidence 999999999999999999999987 67999999999999999999999999999999998766 55444 4688999999
Q ss_pred cCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCCH
Q 010447 468 GVTAKDIASVAQKLLS-SPLTMASYGDVINVPSY 500 (510)
Q Consensus 468 ~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~ 500 (510)
+||++||++++++|+. ++.+++++||...-|-.
T Consensus 394 ~vt~~dv~~~a~~~l~~~~~~~~vvg~~~~~~~~ 427 (434)
T 3gwb_A 394 ELTVEQVKAAMNKHLNVDKMVIVSAGPTVAQKPL 427 (434)
T ss_dssp HCCHHHHHHHHHHHCCGGGCEEEEEECCCCCCC-
T ss_pred hCCHHHHHHHHHHhcChhhEEEEEEcCccccCcc
Confidence 9999999999999999 88999999998765543
No 9
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=1.4e-53 Score=438.61 Aligned_cols=412 Identities=19% Similarity=0.295 Sum_probs=366.6
Q ss_pred EEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEeecce
Q 010447 80 KISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASRE 158 (510)
Q Consensus 80 ~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 158 (510)
+.++|+||++|++.+++ .+.+++.+++++|+..|+++..|++|+++||+++|+.+ +.++..|++++++++.+
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 45789999999988776 47999999999999999999999999999999998643 34788999999999999
Q ss_pred eEEEEEeccCCChHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHHHHhhCCh-HHHHHHHHHHhhcCC-CCCCCCCC
Q 010447 159 QMGYSFDALKTYVPEMVELLIDCVRNPV---FLDWEVNEQLTKVKSEISEVSNNP-QSLLLEAIHSAGYSG-ALANPLLA 233 (510)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~---f~~~~~~~~k~~~~~e~~~~~~~p-~~~~~~~l~~~~~~~-~~~~~~~~ 233 (510)
++.|.+++++++++.+|+++.+++.+|. |++++|+++|+.+.++++...++| ..++.+.+++.+|++ +++++..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999888899 999999999999987 99998899
Q ss_pred ChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCCC-CccCCCceEEe-cCCCCCc
Q 010447 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQ-ADSGDQL 310 (510)
Q Consensus 234 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 310 (510)
+.+.|++++.++|++||+++|.|+|++++++| +++++++++++++|++||....+.... +.+.+....+. .+. ++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 232 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTL--PK 232 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECTTS--SS
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCCCC--Cc
Confidence 99999999999999999999999999999999 999999999999888888654332111 12223333332 344 78
Q ss_pred eEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCC-cccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEEE
Q 010447 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG-MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG 389 (510)
Q Consensus 311 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~-~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~~ 389 (510)
+++.++|+.+. .++++..++.+++.+|+++ ++||||+| ++++||+.||++ |++|+++++...+.+.|.|.+++
T Consensus 233 ~~v~~~~~~~~--~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe~-gl~y~v~~~~~~~~~~g~~~i~~ 306 (431)
T 3cx5_A 233 AWISLAVEGEP--VNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQEY-QLCDNFNHFSLSYKDSGLWGFST 306 (431)
T ss_dssp EEEEEEEECCC--TTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHTT-TCCSEEEEEEEECSSCEEEEEEE
T ss_pred eEEEEEeecCC--CCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHhc-CceeeEeEeecccCCCceEEEEE
Confidence 99999999887 4778999999999999964 56899996 789999999975 89999999887777789999999
Q ss_pred EeCc-chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010447 390 TTGS-DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM--NLESRMVVSEDIGRQVLTYGERKPVEHFLKTV 466 (510)
Q Consensus 390 ~~~p-~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 466 (510)
.++| +++.++++.+.+++.++++ + ++++||+++|+.++.++.. ..+++..++..++..++.+|.+.+.+++.+.|
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 384 (431)
T 3cx5_A 307 ATRNVTMIDDLIHFTLKQWNRLTI-S-VTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKI 384 (431)
T ss_dssp EESCTTCHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred eeCchhhHHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999 9999999999999999987 4 9999999999999999999 89999999999988765567766678899999
Q ss_pred hcCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCCHHHHHhHhh
Q 010447 467 EGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 508 (510)
Q Consensus 467 ~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~i~~~~~ 508 (510)
++||++||++++++++. ++.+++++||..++|++++|.+++.
T Consensus 385 ~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 427 (431)
T 3cx5_A 385 DAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMS 427 (431)
T ss_dssp HHCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTS
T ss_pred hcCCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHHH
Confidence 99999999999999998 8899999999999999999988763
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=4.7e-53 Score=433.99 Aligned_cols=405 Identities=17% Similarity=0.253 Sum_probs=359.6
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCC----CCChHHHHHHHHHcCCee
Q 010447 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----NRSHLRIVREVEAIGGNV 151 (510)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~----~~s~~~l~~~l~~~g~~~ 151 (510)
++++.++|+||++|++.+++ .+.+++.+++++|+..++++..|++|+++||+++||+ +++..++.+.++..|+++
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 46789999999999987776 5799999999999999999999999999999999999 999999999999999999
Q ss_pred eEeecceeEEEEEeccCCCh--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCC
Q 010447 152 QASASREQMGYSFDALKTYV--PEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALA 228 (510)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l--~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~ 228 (510)
+++++.+++.|.++++++++ +.+|+++.+.+.+|.|++++|+++|+.+.+++++..++|...+.+.+...+|++ +|+
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 999999999999999999999999999999999988999999999999999987 998
Q ss_pred CCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCC-CCCccCCC-ceEEecC
Q 010447 229 NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKSVYTGG-DYRCQAD 305 (510)
Q Consensus 229 ~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~ 305 (510)
.+. +.+.|++++.++|++||+++|.|+|++++++| +++++++++++++|+.||....+.. +.+....+ ...+..+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 886 88999999999999999999999999999999 9999999999999999986543322 11222222 3334445
Q ss_pred CCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceE
Q 010447 306 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 385 (510)
Q Consensus 306 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~ 385 (510)
. +++++.++|+.+. .+.++..++.+++.+||++ |+++|||++||++.|++|+++++...+.+.+.|
T Consensus 240 ~--~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~ 305 (424)
T 3amj_B 240 A--TQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLF 305 (424)
T ss_dssp S--SEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEE
T ss_pred C--CccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeE
Confidence 5 7899999999876 4778999999999999964 266999999999999999999998887788999
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC-CHHHHHH
Q 010447 386 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK-PVEHFLK 464 (510)
Q Consensus 386 ~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~ 464 (510)
.++++++|+++.++++.+.+++.++++ ++++++||+++|+.++..+....+++..++..++.... ++.+. ..+++.+
T Consensus 306 ~i~~~~~~~~~~~~~~~i~~~l~~l~~-~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 383 (424)
T 3amj_B 306 QIGFETRAEKADEAVQVANDTLDAFLR-EGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGY-YGLPLDYLDHYTE 383 (424)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHH-TTCCTTTTTSHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHH-cCCChhHHHHHHH
Confidence 999999999999999999999999987 67999999999999999999999999999999987655 55543 4678899
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCC
Q 010447 465 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPS 499 (510)
Q Consensus 465 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~ 499 (510)
.|++||++||++++++++. ++.+++++||...+..
T Consensus 384 ~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~~ 419 (424)
T 3amj_B 384 RVQAVTVEQVREAFARHVKRENLITVVVGGKASLEH 419 (424)
T ss_dssp HHHTCCHHHHHHHHHHHCCGGGCEEEEEECC-----
T ss_pred HHHcCCHHHHHHHHHHhcCccceEEEEECChhhhhh
Confidence 9999999999999999999 8999999999877654
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=2.4e-48 Score=398.77 Aligned_cols=391 Identities=15% Similarity=0.180 Sum_probs=342.2
Q ss_pred EEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCC-ChHHHHHHHHHc-CCeeeEeecce
Q 010447 82 STLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAI-GGNVQASASRE 158 (510)
Q Consensus 82 ~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~-s~~~l~~~l~~~-g~~~~~~~~~~ 158 (510)
++|+||++|++.+++ .+.+.+.+++++|+..++ .|++|+++||++.|+.++ +..++.+.++.. |++++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 889999999998775 589999999999997654 699999999999999998 888999999998 99999999988
Q ss_pred e----EEEEEeccCC-------ChHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhh
Q 010447 159 Q----MGYSFDALKT-------YVPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAG 222 (510)
Q Consensus 159 ~----~~~~~~~~~~-------~l~~~l~ll~~~~~~p~-----f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~ 222 (510)
+ +.|+++++++ +++.+|+++.+++.+|. |++++|+++|+.+.+++++..++|..++.+.++..+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 7 6999999987 69999999999999999 999999999999999999988999999999999999
Q ss_pred c-CC-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC-C--CccC
Q 010447 223 Y-SG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-K--SVYT 296 (510)
Q Consensus 223 ~-~~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~ 296 (510)
| ++ +++++..|+.+.|++++.++|++||+++|.|+|++++++| ++++++++++ ++|+ ||....+... . .+..
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 77 9999889999999999999999999999999999999999 9999999999 9999 9865432211 1 1111
Q ss_pred CCc-eE-EecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEE
Q 010447 297 GGD-YR-CQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSA 374 (510)
Q Consensus 297 ~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a 374 (510)
... .. ...+. +++++.++|+.+..| ++++..++.|++.+||++ ++++||++||++.|++|++++
T Consensus 241 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lRe~~glaY~v~~ 306 (425)
T 3d3y_A 241 NVIEERTEREVL--AQSKLNLAYNTDIYY-GDSYYFALQVFNGIFGGF-----------PHSKLFMNVREKEHLAYYASS 306 (425)
T ss_dssp SSCEEEEEEEEC--SSEEEEEEEECCCCT-TSTTHHHHHHHHHHHTTS-----------TTSHHHHHTTTTSCCCSEEEE
T ss_pred CcceeEEecCCc--cccEEEEEeecCCCC-CCchHHHHHHHHHHhCCC-----------hhhHHHHHHHHhcCeEEEEec
Confidence 111 22 22456 799999999986334 678999999999999976 449999999999999999998
Q ss_pred eecCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 010447 375 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYG 454 (510)
Q Consensus 375 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 454 (510)
.... ..|.|.+++.++|+++.++++.+.+++.++++ ++++++||+++|+.++..+....+++..++..++..++.+|
T Consensus 307 ~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 383 (425)
T 3d3y_A 307 SIDT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRL-GKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQ 383 (425)
T ss_dssp EEET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTT
T ss_pred cccc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcC
Confidence 7654 36889999999999999999999999999998 67999999999999999999999999999999988877436
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEEcCCC
Q 010447 455 ERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVI 495 (510)
Q Consensus 455 ~~~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~~ 495 (510)
.+.+.+++.+.|++||++||++++++++.+ ..++++|+.+
T Consensus 384 ~~~~~~~~~~~i~~vt~edv~~~a~~~~~~-~~~~v~g~~~ 423 (425)
T 3d3y_A 384 TMLTAEEWIARINAVTIPEIQEVAKRLELQ-AIFFLEGETE 423 (425)
T ss_dssp SCCCHHHHHHHHHHCCHHHHHHHHHHCEEE-EEEEEEEECC
T ss_pred CCCCHHHHHHHHHhCCHHHHHHHHHhccCc-eEEEEeCCCC
Confidence 666688999999999999999999998755 4567777654
No 12
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1.1e-46 Score=393.08 Aligned_cols=405 Identities=16% Similarity=0.126 Sum_probs=328.9
Q ss_pred CceEEEEcCCCcEEEEecC---CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHH----HcCC
Q 010447 77 GKTKISTLPNGVKIASETS---VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE----AIGG 149 (510)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~---~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~----~~g~ 149 (510)
+.++.++|+||++|++..+ +.|.+++.+++++|+.+|++...|++||++||+|+||++++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999997543 35689999999999999999999999999999999999999999998765 4789
Q ss_pred eeeEeecceeEEEEEeccC---CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-
Q 010447 150 NVQASASREQMGYSFDALK---TYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG- 225 (510)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~- 225 (510)
.+|++|+.+++.|.+++++ ++++.+|+++.+.+.+|.|++++|+++|..+.++++....+|....+ ...+++.
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCC
Confidence 9999999999999999999 67999999999999999999999999998777777666667765433 2345555
Q ss_pred CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCC--C-CCccCCCc-e
Q 010447 226 ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P-KSVYTGGD-Y 300 (510)
Q Consensus 226 ~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~-~ 300 (510)
.++++..+ +.|++++.++|++||++||+|+|++++++| ++++++.++++++|++||....... + .++..+.. .
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 66666533 578999999999999999999999999999 9999999999999999987543211 1 11222222 3
Q ss_pred EEecCCCCCceEEEEEEecCCCCCCCcchHHH------HHHHHhhCCCCCCCCCCCCCCcccHHHHHHHh--hcCCeEEE
Q 010447 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTL------TVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN--EFPQVQSF 372 (510)
Q Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe--~~~~~Y~v 372 (510)
.+..+. +++++.++|..+. ..+++..++ .+++.+|+ ++|+.+||+ +.|++|++
T Consensus 259 ~~~~~~--~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~~ 319 (492)
T 3go9_A 259 LMNEQA--AQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLGF 319 (492)
T ss_dssp EEESSC--SSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEEE
T ss_pred EEcCCC--CCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhcccccccc
Confidence 334556 8999999999986 455665554 89999998 899999999 89999999
Q ss_pred EEeecCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHH
Q 010447 373 SAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE-----SRMVVSEDIG 447 (510)
Q Consensus 373 ~a~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~-----s~~~~~~~~~ 447 (510)
+++.....+.+. +++.+.+++..++++.+.+++.++++ +++|++||+++|+.++.++....+ ++...++.+.
T Consensus 320 ~s~~~~~~~~~~--~~i~~~~~~~~~a~~~i~~el~~l~~-~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~ 396 (492)
T 3go9_A 320 DCRVQYQRAQCA--IHLNTPVENLTANMTFVARELAALRA-NGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRL 396 (492)
T ss_dssp EEEEETTEEEEE--EEEEECGGGHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHH
T ss_pred CchhhhhhcceE--EEEEcCcccHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 988766555544 45566899999999999999999988 679999999999999999877654 4667788877
Q ss_pred HHHHhcCCCCCHHH----HHHHHhcCCHHHHHHHHHHHhcCCceEEEEcCCCCCCC-HHHHHhHhh
Q 010447 448 RQVLTYGERKPVEH----FLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPS-YDAVSSKFK 508 (510)
Q Consensus 448 ~~~~~~~~~~~~~~----~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~~~~p~-~~~i~~~~~ 508 (510)
+.+.........++ +.+.|++||++||++++++++..+..++++|+...++. .+++...+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~~ 462 (492)
T 3go9_A 397 RSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIYN 462 (492)
T ss_dssp HHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHHH
T ss_pred HHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHHH
Confidence 77664443333333 34669999999999999999996678888888877764 666665543
No 13
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.8e-45 Score=414.05 Aligned_cols=406 Identities=13% Similarity=0.119 Sum_probs=344.9
Q ss_pred CCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCh-HHHHHHHHHcCCeee
Q 010447 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQ 152 (510)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~~ 152 (510)
+...++..+|+||++|++.+++ .+.+.+.+++++|+..|+++..|++||+|||+|+||.+++. .++.+.++.+|+++|
T Consensus 17 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~N 96 (939)
T 1q2l_A 17 DNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHN 96 (939)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcce
Confidence 3456889999999999987766 56899999999999999999999999999999999999985 699999999999999
Q ss_pred EeecceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCC
Q 010447 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPL 231 (510)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~ 231 (510)
++|+.+++.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+|++ ||+++.
T Consensus 97 A~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 176 (939)
T 1q2l_A 97 ASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFS 176 (939)
T ss_dssp EEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCC
T ss_pred EEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred CCChHHhcc----CCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCccCC---C-ce
Q 010447 232 LAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTG---G-DY 300 (510)
Q Consensus 232 ~~~~~~l~~----l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~---~-~~ 300 (510)
.|+.+.|++ ++.++|++||++||+|+||+++|+| ++++++.++++++|++||....+.+. .+.+.. + ..
T Consensus 177 ~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (939)
T 1q2l_A 177 GGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIII 256 (939)
T ss_dssp SCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEE
T ss_pred CCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEE
Confidence 999999999 9999999999999999999999999 99999999999999999875433221 122221 1 12
Q ss_pred EEecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeec--C
Q 010447 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSN--I 378 (510)
Q Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~--~ 378 (510)
...++. +++.+.++|..|. +.+..+..++.+++.+||++++ ++|+..||+ .|++|+++++.. .
T Consensus 257 ~~~~~~--~~~~l~i~~~~~~-~~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~ 321 (939)
T 1q2l_A 257 HYVPAL--PRKVLRVEFRIDN-NSAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIV 321 (939)
T ss_dssp EECCSS--CCCEEEEEEEEEC-CGGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESST
T ss_pred EEEeCC--CCcEEEEEEEcCC-hHHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeecccccc
Confidence 222455 7899999999987 3233366788999999998744 899999995 699999998752 3
Q ss_pred CCCcceEEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcC
Q 010447 379 YNHSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL-ESRMVVSEDIGRQVLTYG 454 (510)
Q Consensus 379 ~~~~~~~~i~~~~~p---~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~ 454 (510)
+.+.+.|.+++.+.+ ++..++++.+.+++..+++ ++++++||+++|+.+..++.... +++...+..++..+. +.
T Consensus 322 ~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~-~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 399 (939)
T 1q2l_A 322 NGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLRE-KGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI-RV 399 (939)
T ss_dssp TSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT-TS
T ss_pred CCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh-cC
Confidence 456789999999877 4889999999999999987 67999999999999999987765 567777888877754 33
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEEcCCCCC
Q 010447 455 ERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINV 497 (510)
Q Consensus 455 ~~~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~~~~ 497 (510)
...........++++|++||+++++++..++.+++++||....
T Consensus 400 ~~~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~~~~ 442 (939)
T 1q2l_A 400 PVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPH 442 (939)
T ss_dssp CGGGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEECTTCCC
T ss_pred CHHHHhcCchhhhccCHHHHHHHHHhcCHHHcEEEEEcCCCCC
Confidence 2222333456799999999999998743388899999986543
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.2e-42 Score=393.00 Aligned_cols=404 Identities=17% Similarity=0.156 Sum_probs=336.0
Q ss_pred CCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCh-HHHHHHHHHcCCeee
Q 010447 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQ 152 (510)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~~ 152 (510)
+...++..+|+||++|++.+++ .+.+.+.+++++|+..|+++..|++||+|||+|+||.+++. .++.+.++.+|+.+|
T Consensus 31 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 110 (990)
T 3cww_A 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSN 110 (990)
T ss_dssp CCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCcee
Confidence 4467899999999999987665 46999999999999999999999999999999999999987 799999999999999
Q ss_pred EeecceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCC
Q 010447 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPL 231 (510)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~ 231 (510)
++|+.+++.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+|++ +|+++.
T Consensus 111 A~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~ 190 (990)
T 3cww_A 111 AFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFG 190 (990)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCC
T ss_pred EEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999988899999888888888887 999999
Q ss_pred CCChHHhccC-------CHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCccCC---C
Q 010447 232 LAPESAINRL-------NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTG---G 298 (510)
Q Consensus 232 ~~~~~~l~~l-------~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~---~ 298 (510)
.|+.+.|..+ +.++|++||++||+|+||+++++| +++++++++++++|+.||....+.+. .+++.. +
T Consensus 191 ~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 270 (990)
T 3cww_A 191 TGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270 (990)
T ss_dssp SCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSS
T ss_pred CCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcC
Confidence 9999999999 999999999999999999999999 99999999999999999876433211 112211 1
Q ss_pred c-eEEecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeec
Q 010447 299 D-YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSN 377 (510)
Q Consensus 299 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~ 377 (510)
. ....+.. +++.+.++|..+. ..+..+..++.+++.+||+++. ++ |+..||+ .|++|+++++..
T Consensus 271 ~~~~~~~~~--~~~~l~~~~~~~~-~~~~~~~~~~~~l~~lLg~~~~----------~s-l~~~Lr~-~g~~~~~~a~~~ 335 (990)
T 3cww_A 271 QLYKIVPIK--DIRNLYVTFPIPD-LQKYYKSNPGHYLGHLIGHEGP----------GS-LLSELKS-KGWVNTLVGGQK 335 (990)
T ss_dssp EEEEECCSS--SCCEEEEEEEECC-CGGGTTTCHHHHHHHHHTCCST----------TC-HHHHHHH-TTSCSCEEEEEE
T ss_pred eEEEEEECC--CCcEEEEEEEcCC-hhhhhhhCHHHHHHHHhcCCCC----------Cc-HHHHHHH-CCCcceeeeccc
Confidence 1 2222444 6889999999987 2234567889999999986421 25 6679997 589999998766
Q ss_pred C-CCCcceEEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHh
Q 010447 378 I-YNHSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMVVSEDIGRQVLT 452 (510)
Q Consensus 378 ~-~~~~~~~~i~~~~~p---~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~-~~s~~~~~~~~~~~~~~ 452 (510)
. ..+.+.|.+++.+.+ ++..++++.+.++++.+++ +++++++|++++......+... .+++...+..+...+.
T Consensus 336 ~~~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 413 (990)
T 3cww_A 336 AGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRA-EGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILH- 413 (990)
T ss_dssp EEETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT-
T ss_pred cCCCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHh-
Confidence 4 345688999999765 4889999999999999988 6799999999998877776653 4567777777765533
Q ss_pred cCCCCCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEEcCCC
Q 010447 453 YGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVI 495 (510)
Q Consensus 453 ~~~~~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~~ 495 (510)
...+.......+.|.++|++||+++++++..++.+++++|+..
T Consensus 414 ~~~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~~ 456 (990)
T 3cww_A 414 YYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSF 456 (990)
T ss_dssp TSCGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGGG
T ss_pred hCCHHHHhccchhhhcCCHHHHHHHHHhcCHhHEEEEEEcCCC
Confidence 3222223344577999999999999986544777888888743
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.7e-42 Score=391.76 Aligned_cols=403 Identities=12% Similarity=0.071 Sum_probs=327.2
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHH-HHHHHH-cCCeeeEe
Q 010447 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI-VREVEA-IGGNVQAS 154 (510)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l-~~~l~~-~g~~~~~~ 154 (510)
..++..+|+||++|++.+++.... ++.+|+..++++..|++|++|||+|+||.+++..++ .+.+.. .|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 456778999999999877775433 356788889989999999999999999999998774 444544 68899999
Q ss_pred ecceeEEEEEecc-CCChHHHHHHHHHhhhCCCC--CHHHHHHH---------------HHHHHHHHHHhhCChHHHHHH
Q 010447 155 ASREQMGYSFDAL-KTYVPEMVELLIDCVRNPVF--LDWEVNEQ---------------LTKVKSEISEVSNNPQSLLLE 216 (510)
Q Consensus 155 ~~~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~f--~~~~~~~~---------------k~~~~~e~~~~~~~p~~~~~~ 216 (510)
|+.+++.|.+.+. .++++.+|+++.+.+.+|.| ++++|+++ +..+.+|++...++|..++.+
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~ 191 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGR 191 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHH
Confidence 9999999999875 56999999999999999999 99999999 889999999988999999999
Q ss_pred HHHHhhcCC-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCC--CCCC--CCC
Q 010447 217 AIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLP--SIHP--REE 290 (510)
Q Consensus 217 ~l~~~~~~~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~--~~~~--~~~ 290 (510)
.+.+.+|++ +|+++..|+.+.|++++.++|++||++||+|+||+++++| +|+++++++++++|+.|+ .... ...
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~ 271 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK 271 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC
Confidence 999999988 9999999999999999999999999999999999999999 999999999999999998 4221 111
Q ss_pred CCCccCCCc---eEEec---CCCCCceEEEEEEecCCCCC-CCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHH
Q 010447 291 PKSVYTGGD---YRCQA---DSGDQLTHFVLAFELPGGWH-KDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVL 363 (510)
Q Consensus 291 ~~~~~~~~~---~~~~~---~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lR 363 (510)
..+++.... ..+.. +...+++++.++|..+. +. +.++..++.+++.+|+++. +++|++.||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~a~~vl~~~Lg~~~-----------~S~L~~~l~ 339 (995)
T 2fge_A 272 FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE-KPLDLQTQLALGFLDHLMLGTP-----------ASPLRKILL 339 (995)
T ss_dssp CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS-SCCCHHHHHHHHHHHHHHHSST-----------TSHHHHHHH
T ss_pred CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCC-CcCCHHHHHHHHHHHHHHcCCC-----------CCHHHHHHH
Confidence 122333321 11211 21126899999999987 32 3578999999999998753 499999999
Q ss_pred hhcCCeEEEEEe-ecCCCCcceEEEE-EEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc--CCh
Q 010447 364 NEFPQVQSFSAF-SNIYNHSGMFGIQ-GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL--ESR 439 (510)
Q Consensus 364 e~~~~~Y~v~a~-~~~~~~~~~~~i~-~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~--~s~ 439 (510)
++ |++|+++++ +......+.|.|. ..+++++..++++.+.++++++++ ++++++||+++|+.+...+.... +++
T Consensus 340 e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~-~g~~~~el~~ak~~~~~~~~~~~~~~~~ 417 (995)
T 2fge_A 340 ES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAE-EGFDNDAVEASMNTIEFSLRENNTGSFP 417 (995)
T ss_dssp HT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCTTSC
T ss_pred hc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhccCCCCc
Confidence 86 899999865 4444557889886 468899999999999999999988 67999999999999999887654 233
Q ss_pred H--HHHHHHHHHHHhcCCCCCHHHHHHHHhcCCH----H----HHHHHHHHHhc-C-CceEEEEcCCCCC
Q 010447 440 M--VVSEDIGRQVLTYGERKPVEHFLKTVEGVTA----K----DIASVAQKLLS-S-PLTMASYGDVINV 497 (510)
Q Consensus 440 ~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~----~----di~~~a~~~l~-~-~~~~~v~G~~~~~ 497 (510)
. ..+..+...++.++.+....++.+.+++++. + +|++++++|+. + +.++++++|....
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~ 487 (995)
T 2fge_A 418 RGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEK 487 (995)
T ss_dssp HHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTH
T ss_pred cHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCccH
Confidence 4 3556776676655666655555566666666 8 89999999997 3 4567777775543
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=9.7e-41 Score=373.96 Aligned_cols=406 Identities=13% Similarity=0.095 Sum_probs=322.8
Q ss_pred CCCceEEEEcCCCcEEEEecCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHH--cCCee
Q 010447 75 EPGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGGNV 151 (510)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~--~g~~~ 151 (510)
..+.++..+|+||++|++.+++.+ .+. ..+..|+..+++...|++|++|||+|+||++++..++...+.. .|+.+
T Consensus 83 ~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~l 160 (1193)
T 3s5m_A 83 KMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHL 160 (1193)
T ss_dssp TEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEE
T ss_pred cccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceE
Confidence 346788899999999997665543 222 2345566778889999999999999999999999999999988 88999
Q ss_pred eEeecceeEEEEEeccC-CChHHHHHHHHHhhhCCCCCHHH--HHHH-----------------------------HHHH
Q 010447 152 QASASREQMGYSFDALK-TYVPEMVELLIDCVRNPVFLDWE--VNEQ-----------------------------LTKV 199 (510)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~--~~~~-----------------------------k~~~ 199 (510)
|++|+.+++.|.+.+.+ ++++.+|+++.|.+.+|.|++++ |.++ |..+
T Consensus 161 NA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV 240 (1193)
T 3s5m_A 161 NAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIV 240 (1193)
T ss_dssp EEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHH
T ss_pred EeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHH
Confidence 99999999999999888 89999999999999999998877 8776 5689
Q ss_pred HHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHh
Q 010447 200 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (510)
Q Consensus 200 ~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~ 277 (510)
.+|++...++|..++.+.+.+.+|++ ||+++..|++++|.+++.++|++||++||+|+|++++++| ++++++++++++
T Consensus 241 ~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~ 320 (1193)
T 3s5m_A 241 YNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQ 320 (1193)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999988 9999999999999999999999999999999999999999 999999999999
Q ss_pred hcCCCCCCCCCC------CCCCccCCC-ceEEe--cCCCCCceEEEEEEecCCC---CCC--------------------
Q 010447 278 LLSDLPSIHPRE------EPKSVYTGG-DYRCQ--ADSGDQLTHFVLAFELPGG---WHK-------------------- 325 (510)
Q Consensus 278 ~~~~l~~~~~~~------~~~~~~~~~-~~~~~--~~~~~~~~~v~~~~~~~~~---~~~-------------------- 325 (510)
+|+.|+..+.+. ...+++.+. ..... ...+.+++++.++|..++. ..+
T Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~ 400 (1193)
T 3s5m_A 321 YLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGS 400 (1193)
T ss_dssp HHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CC
T ss_pred HhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCccccccccccccccccccccccccccc
Confidence 999998554311 111222222 22221 1112278999999998740 112
Q ss_pred ---------CcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEE-EeecCCCCcceEEEEEE-eCcc
Q 010447 326 ---------DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFS-AFSNIYNHSGMFGIQGT-TGSD 394 (510)
Q Consensus 326 ---------~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~-a~~~~~~~~~~~~i~~~-~~p~ 394 (510)
.++..++.||+.+|++|.+ ||||+.||+. |++|+++ +++......+.|.|++. ++++
T Consensus 401 ~~~~~~~~~~~d~~al~vL~~iLggg~s-----------SrL~~~L~e~-gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~ 468 (1193)
T 3s5m_A 401 HSSDLSLENPTDYFVLLIINNLLIHTPE-----------SVLYKALTDC-GLGNNVIDRGLNDSLVQYIFSIGLKGIKRN 468 (1193)
T ss_dssp CCSTTCCCSHHHHHHHHHHHHHHHSSTT-----------SHHHHHHHHH-CSCSEEEEEEEECSSSSCEEEEEEEEECTT
T ss_pred ccccccccCccHHHHHHHHHHHHCCCCC-----------CHHHHHHHhc-CCeeeecccccccccCCcEEEEEEecCChh
Confidence 4788999999999998644 9999999984 9999997 56666666678888874 5554
Q ss_pred h--------H-HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh-cCChHH--HHHHHHHHHHhcCCCCC---H
Q 010447 395 F--------V-SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMV--VSEDIGRQVLTYGERKP---V 459 (510)
Q Consensus 395 ~--------~-~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~-~~s~~~--~~~~~~~~~~~~~~~~~---~ 459 (510)
+ + +++.+.+.+++.++++ ++++++||+++|+++..++... ..++.. .+..+...+++.|++.. .
T Consensus 469 ~~~~~~~~~~~~~~~~~I~~~L~~l~~-~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~ 547 (1193)
T 3s5m_A 469 NEKIKNFDKVHYEVEDVIMNALKKVVK-EGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEF 547 (1193)
T ss_dssp CTTCSCGGGHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSH
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 5 6899999999999998 6799999999999999888764 344443 24455666676787765 4
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHhc-CCc-eEEEEcCCC
Q 010447 460 EHFLKTVEGVT---AKDIASVAQKLLS-SPL-TMASYGDVI 495 (510)
Q Consensus 460 ~~~~~~i~~vT---~~di~~~a~~~l~-~~~-~~~v~G~~~ 495 (510)
++.++.+++.+ ++++++++++||. ++. +++++-|..
T Consensus 548 ~~~l~~l~~~~~~~~~~~~~li~~yll~n~~~~~~~~~P~~ 588 (1193)
T 3s5m_A 548 EKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVILLEGDE 588 (1193)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHTTTCCCEEEEEEEEES
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhccCCceEEEEEEcCC
Confidence 45555555543 4599999999996 443 555555543
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=7.5e-41 Score=334.67 Aligned_cols=346 Identities=22% Similarity=0.303 Sum_probs=288.4
Q ss_pred cEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEeecceeEEEEEecc
Q 010447 88 VKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (510)
Q Consensus 88 l~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (510)
+||++++.+.|.+++++++++|+.+++ ..|++|+++||+|+||++++..++.+.++..|++++++++.+++.|.++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 588998888899999999999999963 789999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhhhCCCCCHHHHH-HHHHHHHHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCChHHhccCCHHHH
Q 010447 168 KTYVPEMVELLIDCVRNPVFLDWEVN-EQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 246 (510)
Q Consensus 168 ~~~l~~~l~ll~~~~~~p~f~~~~~~-~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l 246 (510)
+++++.+|+++.+++.+|.|++++|+ ++|+.+.++++...++|...+.+.+++.+|+++++.+.. .+.|++++.++|
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999999999999999999999998 999999999999899999999999999999668888863 688999999999
Q ss_pred HHHHHhhcCCCCeEEEEcCCCHHHHHHHH-HhhcCCCCCCCCCCC--CCCccCCCceEEecCCCCCceEEEEEEecCCCC
Q 010447 247 EEFVAENYTGPRMVLAASGVEHDQLVSVA-EPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGDQLTHFVLAFELPGGW 323 (510)
Q Consensus 247 ~~f~~~~~~~~~~~l~i~Gv~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 323 (510)
++||+++|.|+|++++++|++++++++++ +++|++||....+.. +.+.+.++...+. .. .++.+.+++..
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~---- 229 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVR-FI--GDSVAAIGIPV---- 229 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEE-CS--SSEEEEEEEEE----
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEe-cC--CCceEEEecCC----
Confidence 99999999999999999999999999999 899999986543321 1122334444433 33 56666665432
Q ss_pred CCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEEEEeC-cchHHHHHHH
Q 010447 324 HKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG-SDFVSKAIDL 402 (510)
Q Consensus 324 ~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~~~~~-p~~~~~~~~~ 402 (510)
++++.+++.|++.+|| + +||++.|++ ++++...+.+.|.|.++++++ ++.+.+ .
T Consensus 230 -~~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~~~~~~~~---~ 284 (352)
T 3cx5_B 230 -NKASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQDSAVVSS---N 284 (352)
T ss_dssp -CTTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEESCHHHHHH---H
T ss_pred -CChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeCCHHHHHH---H
Confidence 4578999999999998 3 678888876 555555566788999999997 554444 4
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHh
Q 010447 403 AARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLL 482 (510)
Q Consensus 403 ~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di~~~a~~~l 482 (510)
+.+++.+ +++++||+++|+.++.++..+.++. |.+.+. .|++||.+ + +
T Consensus 285 i~~~l~~-----~~t~~el~~ak~~~~~~~~~~~~~~--------------~~~~~~-----~i~~vt~~-------~-~ 332 (352)
T 3cx5_B 285 IKKIVAD-----LKKGKDLSPAINYTKLKNAVQNESV--------------SSPIEL-----NFDAVKDF-------K-L 332 (352)
T ss_dssp HHHHHHH-----HHSCEECGGGHHHHHHHHHHHCCST--------------TCCCCS-----CGGGCCEE-------C-C
T ss_pred HHHHHHh-----cCCHHHHHHHHHHHHHHHHhhhhcc--------------CCccce-----eeeeeeHh-------h-c
Confidence 4444433 3899999999999999999988873 333333 59999932 2 5
Q ss_pred cCCceEEEEcCCCCCCCHHH
Q 010447 483 SSPLTMASYGDVINVPSYDA 502 (510)
Q Consensus 483 ~~~~~~~v~G~~~~~p~~~~ 502 (510)
++++++++||..++|.+++
T Consensus 333 -~~~~~~~~G~~~~~~~~~~ 351 (352)
T 3cx5_B 333 -GKFNYVAVGDVSNLPYLDE 351 (352)
T ss_dssp -CSCEEEEEESGGGSCCGGG
T ss_pred -CCceEEEEccccccCcccc
Confidence 8999999999999998875
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=9.4e-37 Score=343.17 Aligned_cols=413 Identities=9% Similarity=0.055 Sum_probs=324.9
Q ss_pred CCCCCCCCCCCCCCCC--C-CCCCCceEEEEcCCCcEEEEecCCC----CeEEEEEEEcccccCCCCCCCcHHHHHHHhh
Q 010447 56 SLDFPLPGVSLPPSLP--D-YVEPGKTKISTLPNGVKIASETSVS----PVASISLYVGCGSIYESPISFGTTHLLERMA 128 (510)
Q Consensus 56 ~l~~pl~~~~~p~~~~--~-~~~~~~~~~~~L~NGl~v~~~~~~~----~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~ 128 (510)
.+..|-++.++|.+.. . ......++.++|+||++||+++++. |++.|.+.+.+|...+++...|+++++..|+
T Consensus 474 ~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll 553 (939)
T 1q2l_A 474 ALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLA 553 (939)
T ss_dssp CCCCCCCCTTCCCCCCCCCCSSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHH
T ss_pred cccCCCCCcCCCcCcccccCcCCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4566667777777632 1 1223345788999999999988762 4999999999999988877789999999999
Q ss_pred ccCCCCCChHHHHHHHHHcCCeeeEeecceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh-h
Q 010447 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV-S 207 (510)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~-~ 207 (510)
..|+.. +.......|.+++.+. .+++.+.+++.+++++.+|+++.+.+.+|.|++++|+++|+.++.++++. .
T Consensus 554 ~~g~~~-----~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~ 627 (939)
T 1q2l_A 554 GLALDQ-----LSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEK 627 (939)
T ss_dssp HHHHHH-----HHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHH-----HhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 876543 3444566788888888 99999999999999999999999999999999999999999999999997 5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCC
Q 010447 208 NNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH 286 (510)
Q Consensus 208 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~~~~~~~~l~~~~ 286 (510)
++|..++.+.++..+|++ + ++..++.+.|++++.++|.+||+++|.+.+++++++| +++++++++++++++.|+...
T Consensus 628 ~~p~~~a~~~l~~~l~~~-~-~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~ 705 (939)
T 1q2l_A 628 GKAFEQAIMPAQMLSQVP-Y-FSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADG 705 (939)
T ss_dssp SCHHHHHHHHHHHTTSSS-C-CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCC
T ss_pred cChHHHHHHHHHHHhcCC-C-CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCC
Confidence 679999999999988864 3 4445678999999999999999999999999999999 999999999999998887543
Q ss_pred CCCCCC--CccCCC-ceEEecCCCCCceEE-EEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHH
Q 010447 287 PREEPK--SVYTGG-DYRCQADSGDQLTHF-VLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRV 362 (510)
Q Consensus 287 ~~~~~~--~~~~~~-~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~l 362 (510)
...... ....++ ...+....+..++.+ .+.|..+. .+.++.+.+.+|..+ |+++||++|
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lL~~~---------------~~s~lf~~L 768 (939)
T 1q2l_A 706 SEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGY--DEYTSSAYSSLLGQI---------------VQPWFYNQL 768 (939)
T ss_dssp SCCCCCEEECCCSCEEEEEEECCSSSCEEEEEEEECSSC--CHHHHHHHHHHHHHH---------------HHHHHTHHH
T ss_pred ccccccceEEeCCCceEEEecCCCCCCceeEEEEEecCC--CCHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 221111 112223 222222221134555 56665543 243445555555554 459999999
Q ss_pred HhhcCCeEEEEEeecCCC-Ccce-EEEEE-EeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCh
Q 010447 363 LNEFPQVQSFSAFSNIYN-HSGM-FGIQG-TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 439 (510)
Q Consensus 363 Re~~~~~Y~v~a~~~~~~-~~~~-~~i~~-~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~ 439 (510)
|++.|++|+|+++..... ..|. |.|+. .++|+++.++++.+.+++.++++ + +|++||+++|+.++.++....++.
T Consensus 769 Rek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~-~t~~el~~~k~~l~~~~~~~~~s~ 846 (939)
T 1q2l_A 769 RTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLR-A-MKPDEFAQIQQAVITQMLQAPQTL 846 (939)
T ss_dssp HTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHTCCCSSH
T ss_pred HHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCH
Confidence 999999999999876443 3342 56666 57899999999999999999886 5 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHhc--CCc--eEEEEcCCC
Q 010447 440 MVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQKLLS--SPL--TMASYGDVI 495 (510)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vT~~di~~~a~~~l~--~~~--~~~v~G~~~ 495 (510)
...+..+|..+...+...+ .+++.+.|++||++||++++++++. +.. ++.++|+..
T Consensus 847 ~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~~~l~v~v~G~~~ 907 (939)
T 1q2l_A 847 GEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQN 907 (939)
T ss_dssp HHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTSCSSEEEEEEECCSSH
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 9999999988876555544 5888999999999999999999986 333 455889864
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=4.8e-35 Score=330.92 Aligned_cols=393 Identities=10% Similarity=0.010 Sum_probs=310.2
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcc-CCCCCChHHHHHHHHHcCCeeeE-
Q 010447 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQA- 153 (510)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~- 153 (510)
.++++ .+.||++|++++++ .+.+++.+++++|+. +++..++++++.+++.. ||++++..++.+.++...+.+++
T Consensus 552 ~~~~~-~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~ 628 (995)
T 2fge_A 552 VPTEV-GDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVY 628 (995)
T ss_dssp CCCEE-EESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEE
T ss_pred CCcee-eecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEee
Confidence 34444 44899999988776 469999999999876 45678899999888875 99999999999999966555555
Q ss_pred ----eecc-----eeEEEEEeccCCChHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHHhh-CChHHHHHHHHHHhh
Q 010447 154 ----SASR-----EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVS-NNPQSLLLEAIHSAG 222 (510)
Q Consensus 154 ----~~~~-----~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~-~~~~~k~~~~~e~~~~~-~~p~~~~~~~l~~~~ 222 (510)
+++. +++.|++++++++++.+|+++.+++++|.|+++ +|+++++.++.++++.. +++..++...++..+
T Consensus 629 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 708 (995)
T 2fge_A 629 PLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAML 708 (995)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred ccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhC
Confidence 5544 889999999999999999999999999999999 99999999999999865 577777787777664
Q ss_pred cCC-CCCCCC-----CCCh--------HHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCH-HHHHHHHHhhcCCC-CCC
Q 010447 223 YSG-ALANPL-----LAPE--------SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEH-DQLVSVAEPLLSDL-PSI 285 (510)
Q Consensus 223 ~~~-~~~~~~-----~~~~--------~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~-~~~~~~~~~~~~~l-~~~ 285 (510)
+++ +++... .+.. +.++.| .++|++||+++|++++++++++| +++ +++.++++++|+.+ |..
T Consensus 709 ~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~ 787 (995)
T 2fge_A 709 NIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENP 787 (995)
T ss_dssp CHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSC
T ss_pred ChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccC
Confidence 433 332211 1111 457888 99999999999999999999999 995 99999999999999 754
Q ss_pred CCCCCCCCccCCCce--EEecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHH
Q 010447 286 HPREEPKSVYTGGDY--RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVL 363 (510)
Q Consensus 286 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lR 363 (510)
..+.. ...++.+.. .+.... ...++..++.... .++++.+++.|++.+|++ ++||.+||
T Consensus 788 ~~~~~-~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iR 848 (995)
T 2fge_A 788 SGGLV-TWDGRLPLRNEAIVIPT--QVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVR 848 (995)
T ss_dssp SSCSC-CCCCCCCCCCEEEECSC--SSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTT
T ss_pred CCCCC-cccccCCccceEEEecC--ceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhh
Confidence 43221 111222211 122223 4556665665544 478999999999999985 68999999
Q ss_pred hhcCCeEEEEEeecCCCCcceEE-EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 010447 364 NEFPQVQSFSAFSNIYNHSGMFG-IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVV 442 (510)
Q Consensus 364 e~~~~~Y~v~a~~~~~~~~~~~~-i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~ 442 (510)
+ .|++|++++.... .|.|+ ++..++| +..++++.+.+.+..+.+ +++|++||+++|..+++++ ....++...
T Consensus 849 e-~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~-~~~te~el~~ak~~li~~~-~~~~~~~~~ 921 (995)
T 2fge_A 849 V-SGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRG-LDVDQETLTKAIIGTIGDV-DSYQLPDAK 921 (995)
T ss_dssp T-TTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHT-CCCCHHHHHHHHHHHHHHH-TCCCCHHHH
T ss_pred h-cCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhc-cCCCCHHHH
Confidence 9 7899999998765 47788 7777777 577888888888887776 6799999999999999998 446777777
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHhc--CCceEEEEcCCCCCCCH
Q 010447 443 SEDIGRQVLTYGERK-PVEHFLKTVEGVTAKDIASVAQKLLS--SPLTMASYGDVINVPSY 500 (510)
Q Consensus 443 ~~~~~~~~~~~~~~~-~~~~~~~~i~~vT~~di~~~a~~~l~--~~~~~~v~G~~~~~p~~ 500 (510)
+...+..++ .|... ..+++.+.|.+||++||+++|++|+. ++.+++++|+..+++..
T Consensus 922 ~~~~~~~~~-~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 922 GYSSLLRHL-LGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
T ss_pred HHHHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCHHHHHhh
Confidence 777776655 45533 46788999999999999999999998 47899999998766655
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.9e-33 Score=317.79 Aligned_cols=415 Identities=9% Similarity=0.047 Sum_probs=326.7
Q ss_pred CCCCCCCCCCCCCCCC--C-C-CCCCceEEEEcCCCcEEEEecCC---CCeEEEEEEEcccccCCCCCCCcHHHHHHHhh
Q 010447 56 SLDFPLPGVSLPPSLP--D-Y-VEPGKTKISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLERMA 128 (510)
Q Consensus 56 ~l~~pl~~~~~p~~~~--~-~-~~~~~~~~~~L~NGl~v~~~~~~---~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~ 128 (510)
.+..|-++.++|.++. + . .....+..++++||++||+++++ .|...+.+.+.+|...++++..++++++..|+
T Consensus 492 ~~~~p~~~~~ip~~~~~~~~~~~~~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll 571 (990)
T 3cww_A 492 KFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELL 571 (990)
T ss_dssp TCCCCCCCTTCCCCCCCCCCCTTCCSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCcccccccCCCCCCCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 3566666777777532 1 1 12234577889999999998766 46888888888887777777788999999987
Q ss_pred ccCCCCCChHHHHHHHHHcCCeeeEeecceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhC
Q 010447 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSN 208 (510)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~ 208 (510)
..+ ++..++...+ .|++++++++.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|+.++..+++...
T Consensus 572 ~~~---~~~~~~~~~l--~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~ 646 (990)
T 3cww_A 572 KDS---LNEYAYAAEL--AGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRA 646 (990)
T ss_dssp HHH---HHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHH---HHHhhhHHHh--CCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 653 2344444444 68899999999999999999999999999999999999999999999999999999999766
Q ss_pred -ChHHHHHHHHHHhhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHH---HHhhcCCCC
Q 010447 209 -NPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSV---AEPLLSDLP 283 (510)
Q Consensus 209 -~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~~~~~~~---~~~~~~~l~ 283 (510)
+|..++...+...+++.++. ..+..+.|++|+.++|.+|++++|.+.+++++++| ++.+++.++ ++++|+.+|
T Consensus 647 ~~p~~~a~~~~~~~l~~~~~~--~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~ 724 (990)
T 3cww_A 647 EQPHQHAMYYLRLLMTEVAWT--KDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHA 724 (990)
T ss_dssp SCHHHHHHHHHHHHHBSSCCC--HHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHhCCCCCC--HHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccC
Confidence 89999999999988854333 23467899999999999999999999999999999 999999888 677887665
Q ss_pred CCCCCC-----C-CCCccCCC-ceEE--e-cCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCC
Q 010447 284 SIHPRE-----E-PKSVYTGG-DYRC--Q-ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG 353 (510)
Q Consensus 284 ~~~~~~-----~-~~~~~~~~-~~~~--~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~ 353 (510)
...... . .....+.+ ...+ . ++. .++.+.+.+..+. .+.++.+++.|++.+|.
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~------------- 787 (990)
T 3cww_A 725 HTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVH--NNSGIEIYYQTDM--QSTSENMFLELFAQIIS------------- 787 (990)
T ss_dssp CCEECCGGGCCCCCBBCCCTTEEEEEEEECSSC--SSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH-------------
T ss_pred CCCCCchhhccccceEEcCCCCeEEEEecCCCC--CCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH-------------
Confidence 321111 0 00111222 2222 2 234 6777777777654 46789999999999986
Q ss_pred cccHHHHHHHhhcCCeEEEEEeecCCCCcceEE--EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q 010447 354 MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG--IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 431 (510)
Q Consensus 354 ~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~ 431 (510)
++||.+||++.|++|+|++......+...+. ++..++|+++.++++.+.+++..+++ + +|++||+++|..++++
T Consensus 788 --~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~-~te~el~~~k~~li~~ 863 (990)
T 3cww_A 788 --EPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-D-MTEEAFQKHIQALAIR 863 (990)
T ss_dssp --HHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-H-SCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-h-cCHHHHHHHHHHHHHH
Confidence 9999999999999999999876654443333 34456788999999999999999887 4 9999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHhc------CCceEEEEcCCCCCC
Q 010447 432 ILMNLESRMVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQKLLS------SPLTMASYGDVINVP 498 (510)
Q Consensus 432 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vT~~di~~~a~~~l~------~~~~~~v~G~~~~~p 498 (510)
+....+++......+|..+...+.... .+++.+.|++||++||++++++++. .+.+++++|+.....
T Consensus 864 ~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~~~~ 937 (990)
T 3cww_A 864 RLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDSN 937 (990)
T ss_dssp HHCCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC---
T ss_pred hcCCCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCCCccc
Confidence 999999999988889888775553443 5788999999999999999999987 356789999886553
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.97 E-value=2.4e-29 Score=282.05 Aligned_cols=383 Identities=13% Similarity=0.081 Sum_probs=283.2
Q ss_pred CCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhc-cCCCCCChHHHHHHHHHcCCeeeEeec------
Q 010447 85 PNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAF-RSTRNRSHLRIVREVEAIGGNVQASAS------ 156 (510)
Q Consensus 85 ~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~-~gt~~~s~~~l~~~l~~~g~~~~~~~~------ 156 (510)
.||++|++.+.+ ++.+++.++++.|... .+..++..|+..++. .||+++++.++.+.++.+++.++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999987766 4699999999999644 356677788877765 499999999999999999998888764
Q ss_pred ----------ceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHH-hhCChHHHHHHHHHHhhcC
Q 010447 157 ----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISE-VSNNPQSLLLEAIHSAGYS 224 (510)
Q Consensus 157 ----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~k~~~~~e~~~-~~~~p~~~~~~~l~~~~~~ 224 (510)
..++.+++.++.++++.+++++.+++.+|+|++.+ +.+.+...+..+.+ ...++..++...+.+.+.+
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 34578999999999999999999999999999864 77777777777766 3445555555555444432
Q ss_pred C-CCCCCCCC--C-----------hHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CC-HHHHHHHHHhhcCCCCC----
Q 010447 225 G-ALANPLLA--P-----------ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPS---- 284 (510)
Q Consensus 225 ~-~~~~~~~~--~-----------~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~-~~~~~~~~~~~~~~l~~---- 284 (510)
. .+.....| . .+.++.| .++|++++++.|+++++++.++| .+ .+++.+.++++++.++.
T Consensus 882 ~~~~~e~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~ 960 (1193)
T 3s5m_A 882 KHYAHNIIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEE 960 (1193)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHH
T ss_pred chhhhhhhCChHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhcccc
Confidence 2 22221111 0 1112233 67999999999999999999999 75 47777666666554431
Q ss_pred CCC----------CCCCC---------Ccc-C-CC-ceEEecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCC
Q 010447 285 IHP----------REEPK---------SVY-T-GG-DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGG 342 (510)
Q Consensus 285 ~~~----------~~~~~---------~~~-~-~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~ 342 (510)
... ..... ..+ . .. ...+..+. +..+++.++.... .+++++.++.|++.+||+
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~- 1035 (1193)
T 3s5m_A 961 NDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPT--FVNSVSMSGILFK--PGEYLDPSFTVIVAALKN- 1035 (1193)
T ss_dssp GGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCC--SSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH-
T ss_pred ccccccccccccccccccccccccccccccccccccceeEecCC--cceEEEEEecCCC--CCCCchHHHHHHHHHHCc-
Confidence 000 00000 001 1 11 12233445 7888999888776 678999999999999994
Q ss_pred CCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCC-CCCCHHHH
Q 010447 343 GSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATP-GEVDQVQL 421 (510)
Q Consensus 343 ~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~-~~~t~~el 421 (510)
++||.+||++.| +|++++++. ..|.|.++..++| +..+.++.+.+++..+.+- +++|++||
T Consensus 1036 -------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp-~~~~tl~~~~~~~~~l~~~~~~~teeEL 1097 (1193)
T 3s5m_A 1036 -------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDP-NLEKTLATFRESAKGLRKMADTMTENDL 1097 (1193)
T ss_dssp -------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBS-CSHHHHHHHHTHHHHHHHHHHHCCHHHH
T ss_pred -------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 799999999876 999999876 5678888887777 4677788877666655430 25999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHhcC----CceEEEEcCCC
Q 010447 422 DRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK-PVEHFLKTVEGVTAKDIASVAQKLLSS----PLTMASYGDVI 495 (510)
Q Consensus 422 ~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vT~~di~~~a~~~l~~----~~~~~v~G~~~ 495 (510)
++||..++.++. ...++...+.......+ +|.+. ..+++.+.|.+||++||+++|++|+.. +.+++++|+..
T Consensus 1098 ~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~-~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvvG~~~ 1174 (1193)
T 3s5m_A 1098 LRYIINTIGTID-KPRRGIELSKLSFLRLI-SNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVIITTKE 1174 (1193)
T ss_dssp HHHHHHHHHHHS-CCCCTHHHHHHHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEEECHH
T ss_pred HHHHHHHHhccc-ccCChHHHHHHHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceEEEEcCHH
Confidence 999999999965 56676667777766555 66654 478899999999999999999999974 58899999853
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.91 E-value=7.1e-23 Score=186.74 Aligned_cols=175 Identities=17% Similarity=0.139 Sum_probs=155.7
Q ss_pred ecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCc
Q 010447 303 QADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHS 382 (510)
Q Consensus 303 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~ 382 (510)
..+. +++++.++|.++. .++++.+++.|++.+|++| ++++||++||++ |++|+++++...+.+.
T Consensus 19 ~~~~--~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~ 82 (197)
T 3ih6_A 19 RRAG--GTPLVAAMYHLPA--AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDP 82 (197)
T ss_dssp ---C--CSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSS
T ss_pred ECCC--CCceEEEEEecCC--CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCC
Confidence 3445 7999999999997 4778999999999999976 449999999997 9999999988877889
Q ss_pred ceEEEEEEeCcc-hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHH
Q 010447 383 GMFGIQGTTGSD-FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEH 461 (510)
Q Consensus 383 ~~~~i~~~~~p~-~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 461 (510)
|.|.+++.|.|+ +.+++++.+.+++.++++ ++++++||+++|+.++..+....+++..++..++.+++ +|.+....+
T Consensus 83 g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~-~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~~~~~~ 160 (197)
T 3ih6_A 83 GLAMFGAQLQPGMDQDKALQTLTATLESLSS-KPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFL 160 (197)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHCTTT-SCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHH
T ss_pred eEEEEEEEECCCCCHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCHHHHHH
Confidence 999999999998 599999999999999988 67999999999999999999999999999999998877 576666788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010447 462 FLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 495 (510)
Q Consensus 462 ~~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 495 (510)
+.+.|++||++||++++++||. ++.++++++|..
T Consensus 161 ~~~~i~~vT~~dv~~~a~~~l~~~~~~~~~~~P~~ 195 (197)
T 3ih6_A 161 QRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIPTE 195 (197)
T ss_dssp HHHHHHTCCHHHHHHHHHHHSSGGGCEEEEECC--
T ss_pred HHHHHHhCCHHHHHHHHHHhCCccCeEEEEEeCCC
Confidence 9999999999999999999999 788889999853
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.30 E-value=1.5e-05 Score=71.33 Aligned_cols=160 Identities=5% Similarity=-0.057 Sum_probs=110.5
Q ss_pred CeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEeec------ceeEEEEEeccCC-C
Q 010447 98 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS------REQMGYSFDALKT-Y 170 (510)
Q Consensus 98 ~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~-~ 170 (510)
+...+.+.+.++...+ .......++..++..|.. ..|.+.+...|..+++++. ...+.+.+.+.++ +
T Consensus 23 ~~~~v~~~~~~~~~~~--~d~~al~vl~~iLggg~s----SrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~ 96 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAGS--PDFVGLDLAATILADTPS----SRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMD 96 (197)
T ss_dssp CSCEEEEEEECCCTTS--TTHHHHHHHHHHHHSSTT----SHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSC
T ss_pred CCceEEEEEecCCCCC--CcHHHHHHHHHHHcCCCC----chHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCC
Confidence 4445555555555443 244566777777765533 2455555444654444332 2346667777777 6
Q ss_pred hHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCChHHhccCCHHHHH
Q 010447 171 VPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLE 247 (510)
Q Consensus 171 l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~ 247 (510)
++++++.+.+.+.+ -.+++++|++.|..++..+.....++...+.......+++.+. ......+.|+++|.+|+.
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~~--~~~~~~~~i~~vT~~dv~ 174 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWR--LFFLQRDRVREAKLDDVQ 174 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCTT--HHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCHHHHH
Confidence 99888888777654 3589999999999999999888888888877776666653211 112235789999999999
Q ss_pred HHHHhhcCCCCeEEEEcC
Q 010447 248 EFVAENYTGPRMVLAASG 265 (510)
Q Consensus 248 ~f~~~~~~~~~~~l~i~G 265 (510)
++.+++|.+.+.+++++|
T Consensus 175 ~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 175 RAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHSSGGGCEEEEEC
T ss_pred HHHHHhCCccCeEEEEEe
Confidence 999999999999988887
No 24
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.05 E-value=0.00014 Score=73.31 Aligned_cols=169 Identities=9% Similarity=0.056 Sum_probs=112.0
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCC--C-CcccHHHHHHHhhcCCeEEEEEeecCCCCcceE
Q 010447 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPG--K-GMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 385 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg--~-~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~ 385 (510)
+...+.+.+..+.............++.+++..|. + | .+...-+.+..+..|..++ ++... + ..
T Consensus 24 ~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt-------~~~~~~~~~~~~~~~l~~~G~~~~--a~t~~--~--~t 90 (424)
T 3amj_B 24 PMLDVQVDFDAGSAREPADQVGVASMTASLMDAGT-------GSGKSALDENAIADRLADIGARLG--GGAEA--D--RA 90 (424)
T ss_dssp SEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEE-------CSTTSCEEHHHHHHHHHHTTCEEE--EEECS--S--CE
T ss_pred CEEEEEEEEecCCccCCCccchHHHHHHHHHHhcc-------CCCccCCCHHHHHHHHHHhCCEEE--eecCC--C--eE
Confidence 56677777776541112234567788888886421 1 0 1222233444455565443 33221 2 25
Q ss_pred EEEEEeCcchH--HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCC-HHHH
Q 010447 386 GIQGTTGSDFV--SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKP-VEHF 462 (510)
Q Consensus 386 ~i~~~~~p~~~--~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~ 462 (510)
.+++.+.+++. .++++.+.+.+.+- .+++++|++.|..++..+....+++...+.......+..+.+.. .. .
T Consensus 91 ~~~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~-~ 165 (424)
T 3amj_B 91 SFSLRVLSSPAERNSALTILRDILAHP----TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS-S 165 (424)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC-C
T ss_pred EEEEEEeccccChhHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC-C
Confidence 56677777776 77777777766652 49999999999999999988777887777665555554443321 11 4
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010447 463 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 495 (510)
Q Consensus 463 ~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 495 (510)
.+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 166 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~ 199 (424)
T 3amj_B 166 VATLQKISRDQLVSFHRTHYVARTAVVTLVGDIT 199 (424)
T ss_dssp HHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCC
T ss_pred HHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 577899999999999999998 999999999974
No 25
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.99 E-value=0.00034 Score=70.37 Aligned_cols=167 Identities=10% Similarity=0.080 Sum_probs=114.7
Q ss_pred CceEEEEEEecCCCCCCCc--chHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEE
Q 010447 309 QLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~--~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~ 386 (510)
+...+.+.|..+. ..++ ......++.+++..|.. +-=...+...+ +..|... +++... + ...
T Consensus 22 ~~~~~~l~~~~Gs--~~e~~~~~G~ah~leh~lf~gt~-------~~~~~~~~~~l-~~~G~~~--na~t~~--d--~t~ 85 (421)
T 3hdi_A 22 RSVSIGIWVGTGS--RYESAEENGISHFLEHMFFKGTN-------TRSAQEIAEFF-DSIGGQV--NAFTSK--E--YTC 85 (421)
T ss_dssp SEEEEEEEESCCG--GGCCGGGTTHHHHHHHHTTSBBS-------SSBHHHHHHHH-HTTTSCE--EEEECS--S--CEE
T ss_pred CEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCC-------CCCHHHHHHHH-HHhCCce--eeeecc--c--eEE
Confidence 5667777777654 3432 35567788888765421 00012344444 4455444 333321 2 245
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC--CHHHHHH
Q 010447 387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHFLK 464 (510)
Q Consensus 387 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~ 464 (510)
+++.+.+++..++++.+.+.+.+- .+++++|++.|..++..+....+++...+.......+..+.+. +..-..+
T Consensus 86 ~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 86 YYAKVLDDHAGQAIDTLSDMFFHS----TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHSB----CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred EEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 667777788888888888777652 4999999999999999999888888887776666655444332 2222457
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010447 465 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 495 (510)
Q Consensus 465 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 495 (510)
.|+++|.+|++++.++++. ++.+++++|+..
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~ 193 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH 193 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC
Confidence 7899999999999999999 999999999985
No 26
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.96 E-value=0.0005 Score=68.84 Aligned_cols=165 Identities=12% Similarity=0.106 Sum_probs=113.5
Q ss_pred CceEEEEEEecCCCCCCCc--chHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEE
Q 010447 309 QLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~--~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~ 386 (510)
+...+.+.+..+. ..++ ......++.+++..|.. .-| ...+.+.+ +..|... +++.+. + ...
T Consensus 22 ~~~~~~l~~~~Gs--~~e~~~~~G~ah~lehmlf~Gt~---~~~----~~~~~~~l-~~~G~~~--na~t~~--d--~t~ 85 (406)
T 3eoq_A 22 RSVALGYFVKTGA--RDETKEESGVSHFLEHMVFKGPE---DMD----ALAVNRAF-DRMGAQY--NAFTSE--E--ATV 85 (406)
T ss_dssp SCEEEEEEESCSG--GGSCGGGTTHHHHHHHHHTTCCT---TCC----HHHHHHHH-HHTTCEE--EEEECS--S--CEE
T ss_pred CeEEEEEEEcccc--CCCCCCCCCHHHHHHHHHhCCCC---CCC----HHHHHHHH-HHhCCCc--cceecC--C--eEE
Confidence 5677777777664 3332 35567788888775421 001 12344444 4455433 443322 2 245
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC--CHHHHHH
Q 010447 387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHFLK 464 (510)
Q Consensus 387 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~ 464 (510)
+++.+.+++..++++.+.+.+ + -.+++++|++.|..++..+....+++...+.......+..+.+. +..-..+
T Consensus 86 y~~~~~~~~l~~~l~ll~d~~-~----p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 86 YYGAVLPEFAYDLLGLFAKLL-R----PALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp EEEEECGGGHHHHHHHHHHHT-S----CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred EEEEecHHHHHHHHHHHHHHh-c----CCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 677888888888888777766 4 34999999999999999999888888888776666655444332 2222456
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010447 465 TVEGVTAKDIASVAQKLLS-SPLTMASYGDV 494 (510)
Q Consensus 465 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~ 494 (510)
.|+++|.+|++++.++++. ++.+++++||.
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~ 191 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRV 191 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESC
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCC
Confidence 7899999999999999999 99999999997
No 27
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.91 E-value=0.00034 Score=70.62 Aligned_cols=167 Identities=13% Similarity=0.033 Sum_probs=111.7
Q ss_pred CceEEEEEEecCCCCCCC-cchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEE
Q 010447 309 QLTHFVLAFELPGGWHKD-KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 387 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~-~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i 387 (510)
+...+.+.|..+. ..+ .......++..++..|. ++ ....=+.+..+..|..++++.. . ....+
T Consensus 34 ~~~~~~~~~~~Gs--~~e~~~~g~a~lle~ll~~gt-------~~-~~~~~l~~~l~~~g~~~~a~t~----~--~~~~~ 97 (434)
T 3gwb_A 34 PMFDLRLIFAAGS--SQDGNAPGVALLTNAMLNEGV-------AG-KDVGAIAQGFEGLGADFGNGAY----K--DMAVA 97 (434)
T ss_dssp SEEEEEEEESCSG--GGCTTSTTHHHHHHHHGGGEE-------TT-EEHHHHHHHHHTTTCEEEEEEC----S--SCEEE
T ss_pred CEEEEEEEEeccc--ccCCcchhHHHHHHHHHhcCc-------cc-CCHHHHHHHHHHhCCEEEeeec----C--CeEEE
Confidence 5677777777665 333 34456677777776431 11 1112123334445655544332 1 23455
Q ss_pred EEEeCcch--HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCC--HHHHH
Q 010447 388 QGTTGSDF--VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKP--VEHFL 463 (510)
Q Consensus 388 ~~~~~p~~--~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~ 463 (510)
++.+.+++ ...+++.+.+.+.+ -.+++++|++.|..++..+....+++...+.......+..+.+.. .....
T Consensus 98 ~~~~~~~~~~l~~~l~ll~~~~~~----p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 173 (434)
T 3gwb_A 98 SLRSLSAVDKREPALKLFAEVVGK----PTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDA 173 (434)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHS----CCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCT
T ss_pred EEEecCccccHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCH
Confidence 66665655 78888877777665 249999999999999999998888888877666555554443322 21235
Q ss_pred HHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010447 464 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 495 (510)
Q Consensus 464 ~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 495 (510)
+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 174 ~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~ 206 (434)
T 3gwb_A 174 KSIPPITLAQLKAFHAKAYAAGNVVIALVGDLS 206 (434)
T ss_dssp TTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCC
Confidence 77999999999999999999 889999999974
No 28
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.91 E-value=0.00046 Score=69.54 Aligned_cols=163 Identities=10% Similarity=0.047 Sum_probs=111.0
Q ss_pred CceEEEEEEecCCCCCCC--cchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEE
Q 010447 309 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~ 386 (510)
+...+.+.+..+. ..+ .+.....++.+++..| +.- ..-+..|..+ +++... ....
T Consensus 21 ~~~~~~l~~~~Gs--~~e~~~~~g~ahlle~~l~~g-------------t~~--~~~~~~G~~~--na~t~~----~~t~ 77 (431)
T 3cx5_A 21 HTASVGVVFGSGA--ANENPYNNGVSNLWKNIFLSK-------------ENS--AVAAKEGLAL--SSNISR----DFQS 77 (431)
T ss_dssp SSEEEEEEESCCG--GGSCTTTTTHHHHHHHHHTSH-------------HHH--HHHHHTTCEE--EEEECS----SCEE
T ss_pred CEEEEEEEEecCc--cCCCCCCcchHHHHHHHHhcC-------------CCc--ccHHHcCCee--eeeecC----CeEE
Confidence 5677788887665 332 3567788888888653 221 2235566544 333322 1256
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCC--CHHHHH
Q 010447 387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR-MVVSEDIGRQVLTYGERK--PVEHFL 463 (510)
Q Consensus 387 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~--~~~~~~ 463 (510)
+++.+.+++..++++.+.+.+.+... ..+++++|++.|..++..+....+++ ...+.......+..+.+. +.....
T Consensus 78 ~~~~~~~~~l~~~l~ll~~~~~~p~~-~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (431)
T 3cx5_A 78 YIVSSLPGSTDKSLDFLNQSFIQQKA-NLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTL 156 (431)
T ss_dssp EEEEECSTTHHHHHHHHHHHHHTCST-TTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCH
T ss_pred EEEEechhhHHHHHHHHHHHHhCccc-ccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCH
Confidence 77788888888888888877765321 01899999999999999888766666 666554444444333331 222346
Q ss_pred HHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010447 464 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 495 (510)
Q Consensus 464 ~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 495 (510)
+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 157 ~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 189 (431)
T 3cx5_A 157 ESLENLVVADLESFANNHFLNSNAVVVGTGNIK 189 (431)
T ss_dssp HHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCC
Confidence 77899999999999999998 899999999974
No 29
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.88 E-value=0.00034 Score=70.27 Aligned_cols=173 Identities=16% Similarity=0.193 Sum_probs=112.9
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCc-ccHHHHHHHhhc-CCeEEEEEeecCCCCcceEE
Q 010447 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGM-YSRLYRRVLNEF-PQVQSFSAFSNIYNHSGMFG 386 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~-~s~L~~~lRe~~-~~~Y~v~a~~~~~~~~~~~~ 386 (510)
+...+.+.|..+. .. +......++.+++..|.. .+ ...-+.+..+.. |..++++.... .....+.
T Consensus 23 ~~~~~~~~~~~g~--~~-e~~g~a~ll~~~l~~gt~--------~~~~~~~~~~~l~~~~G~~~~a~t~~~--~t~~~~~ 89 (425)
T 3d3y_A 23 KTVRLLVRFNTRL--NH-ETITKRTLLSSLMETNSL--------NYPNQVKLSERLAELYGASFGIGVSKK--GNQHWFN 89 (425)
T ss_dssp SEEEEEEEEEEEC--CT-TTHHHHHHHHHHHHHCCS--------SSCSHHHHHHHHHHTTSCEEEEEEEEE--TTEEEEE
T ss_pred ceEEEEEEEeCCC--Cc-cchhHHHHHHHHHHhhhh--------cCCCHHHHHHHHHHHhCceEeeeeeec--CceEEEE
Confidence 6778888888765 23 335667788887764311 11 122233333443 66665554322 2222355
Q ss_pred EEEEeCcc-------hHHHHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-cCCC
Q 010447 387 IQGTTGSD-------FVSKAIDLAARELISVA--TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT-YGER 456 (510)
Q Consensus 387 i~~~~~p~-------~~~~~~~~~~~~l~~l~--~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~ 456 (510)
+++.+.++ +..++++.+.+.+.+-. . +.+++++|++.|..++..+....+++...+.......+. .+.+
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~-~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~ 168 (425)
T 3d3y_A 90 ISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQA-GQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSED 168 (425)
T ss_dssp EEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEET-TEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTT
T ss_pred EEEEecChhhccchhHHHHHHHHHHHHHhCccccc-CCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCC
Confidence 56666554 57888888777776521 1 128999999999999999988777887777655555553 2333
Q ss_pred C--CHHHHHHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010447 457 K--PVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 495 (510)
Q Consensus 457 ~--~~~~~~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 495 (510)
. +.....+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 169 ~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 210 (425)
T 3d3y_A 169 QKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVN 210 (425)
T ss_dssp TTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC
T ss_pred ccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 2 22234677889999999999999998 899999999974
No 30
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=97.83 E-value=0.00059 Score=66.81 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=109.7
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEE
Q 010447 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~ 388 (510)
+...+.+.+.... ..+.......++.+++..|. ++-=...+.+.+ +..|..+ +++.+ .....++
T Consensus 11 ~~v~~~~~~~~Gs--~~e~~~G~ah~leh~lf~Gt-------~~~~~~~l~~~l-~~~G~~~--na~t~----~~~t~~~ 74 (352)
T 3cx5_B 11 KISTLAVKVHGGS--RYATKDGVAHLLNRFNFQNT-------NTRSALKLVRES-ELLGGTF--KSTLD----REYITLK 74 (352)
T ss_dssp SEEEEEEEESCSG--GGCSSTTHHHHHHHHTTSCB-------SSSCHHHHHHHH-HHHTCEE--EEEEC----SSCEEEE
T ss_pred ceEEEEEEEeeec--cCCCcccHHHHHHHHhccCc-------CCCCHHHHHHHH-HHhCCeE--EEEEc----cceEEEE
Confidence 4455555555543 44456677888888886431 110012344444 4556544 33332 2245667
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 010447 389 GTTGSDFVSKAIDLAARELISVATPGEVDQVQLD-RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVE 467 (510)
Q Consensus 389 ~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~-~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 467 (510)
+.+.+++..++++.+.+.+.+- .+++++|+ +.|..++..+....+++...+......... +.+.......+.|+
T Consensus 75 ~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~-~~p~~~~~~~~~l~ 149 (352)
T 3cx5_B 75 ATFLKDDLPYYVNALADVLYKT----AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITF-RKGLGNPLLYDGVE 149 (352)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTTTSCSSCCSSS
T ss_pred EEechhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCccchhhhc
Confidence 7777888888888888877763 49999998 999999999988778888776555555453 33321111257899
Q ss_pred cCCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010447 468 GVTAKDIASVAQKLLS-SPLTMASYGDV 494 (510)
Q Consensus 468 ~vT~~di~~~a~~~l~-~~~~~~v~G~~ 494 (510)
++|.+|++++.++++. ++.+++++| .
T Consensus 150 ~it~~~l~~f~~~~y~~~n~~l~v~G-~ 176 (352)
T 3cx5_B 150 RVSLQDIKDFADKVYTKENLEVSGEN-V 176 (352)
T ss_dssp CCCHHHHHHHHHHHCCGGGEEEEEES-S
T ss_pred cCCHHHHHHHHHHhCCcCcEEEEEeC-C
Confidence 9999999999999999 888899999 5
No 31
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.81 E-value=0.00053 Score=69.28 Aligned_cols=163 Identities=9% Similarity=0.014 Sum_probs=110.6
Q ss_pred CceEEEEEEecCCCCCCC--cchHHHHHHHHhhCCCCCCCCCCCCCCcc-cHHHHHHHhhcCCeEEEEEeecCCCCcceE
Q 010447 309 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 385 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~~~~-s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~ 385 (510)
+...+.+.+..+. ..+ .......++.+++..|. ++ +. ..+... .+..|..++ ++.. ....
T Consensus 43 ~~~~~~~~~~~Gs--~~e~~~~~g~a~lle~~~~~gt-------~~-~~~~~~~~~-l~~~G~~~n--a~t~----~~~t 105 (439)
T 1pp9_B 43 PASRIGLFIKAGS--RYENSNNLGTSHLLRLASSLTT-------KG-ASSFKITRG-IEAVGGKLS--VTST----RENM 105 (439)
T ss_dssp SEEEEEEEESCSG--GGCCTTSTTHHHHHHHTTTSCB-------SS-SCHHHHHHH-HHHTTCEEE--EEEC----SSCE
T ss_pred ceEEEEEEEeccc--cCCCCCcCcHHHHHHHhhcCCC-------Cc-CCHHHHHHH-HHHhCCeEE--EEec----ceEE
Confidence 6777777777664 332 34667788888875431 11 11 234333 345565443 3322 2335
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC--CHHHHH
Q 010447 386 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHFL 463 (510)
Q Consensus 386 ~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~ 463 (510)
.+++.+.+++..++++.+.+.+.+. .+++++|++.|..++..+....+++...+.......+ ++.+. +.....
T Consensus 106 ~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~g~~ 180 (439)
T 1pp9_B 106 AYTVECLRDDVDILMEFLLNVTTAP----EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAA-YRNALANSLYCPD 180 (439)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH-BSSGGGSCSSCCG
T ss_pred EEEEEeehhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH-hcCCCCCCccCCH
Confidence 6677787888888888888777652 4999999999999999998877788777655555544 33211 122235
Q ss_pred HHHhcCCHHHHHHHHHHHhc-CCceEEEEcC
Q 010447 464 KTVEGVTAKDIASVAQKLLS-SPLTMASYGD 493 (510)
Q Consensus 464 ~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~ 493 (510)
+.|+++|.+|++++.++++. ++.+++++|+
T Consensus 181 ~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~ 211 (439)
T 1pp9_B 181 YRIGKVTPVELHDYVQNHFTSARMALIGLGV 211 (439)
T ss_dssp GGTTTCCHHHHHHHHHHHCSGGGEEEEEESS
T ss_pred HHHhhcCHHHHHHHHHHhCCCCceEEEEeCC
Confidence 67899999999999999998 8899999998
No 32
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.75 E-value=0.00091 Score=67.82 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=107.0
Q ss_pred CceEEEEEEecCCCCCCC--cchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEE
Q 010447 309 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~ 386 (510)
+...+.+.+..+. ..+ .......++.+++..|. ..-|. ..|...| +..|.. ++++.+. + ...
T Consensus 27 ~~v~~~~~~~~Gs--~~e~~~~~Glah~lehmlf~Gt---~~~~~----~~l~~~l-~~~g~~--~na~t~~--d--~t~ 90 (445)
T 3ami_A 27 PTLVHMVWYRVGS--MDETTGTTGVAHALEHMMFKGT---KDVGP----GEFSKRV-AAMGGR--DNAFTTR--D--YTA 90 (445)
T ss_dssp SEEEEEEEESCCG--GGCCTTCTTHHHHHHHHTTSCB---SSSCT----THHHHHH-HHTTCE--EEEEECS--S--CEE
T ss_pred CeEEEEEEEeecc--CCCCCCCccHHHHHHHhhcCCC---CCCCH----HHHHHHH-HHhCCc--cccccCC--C--eEE
Confidence 5566666666554 333 24556677777775431 11121 3344333 445543 3444332 2 233
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHhcCCCC--CHHHHH
Q 010447 387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM-NLESRMVVSEDIGRQVLTYGERK--PVEHFL 463 (510)
Q Consensus 387 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~ 463 (510)
+++.+.+++...+++.+.+.+.+- .+++++|++.|..++..+.+ ..+++...+.......++.+.+. +..-..
T Consensus 91 y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~ 166 (445)
T 3ami_A 91 YYQQVPSSRLSDVMGLEADRMANL----VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWM 166 (445)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCH
T ss_pred EEEECCHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCH
Confidence 455666778888888877776652 49999999999999999884 45677766555555545333332 111235
Q ss_pred HHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010447 464 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 495 (510)
Q Consensus 464 ~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 495 (510)
+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 167 e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d 199 (445)
T 3ami_A 167 NDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVE 199 (445)
T ss_dssp HHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCC
T ss_pred HHHhhCCHHHHHHHHHHhCCccceEEEEEcCCC
Confidence 77889999999999999999 899999999963
No 33
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.74 E-value=0.0012 Score=66.90 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=111.0
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcc-----CCCCCChHHHHHHHH-HcCCeeeEee------cceeEEEE
Q 010447 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFR-----STRNRSHLRIVREVE-AIGGNVQASA------SREQMGYS 163 (510)
Q Consensus 96 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-----gt~~~s~~~l~~~l~-~~g~~~~~~~------~~~~~~~~ 163 (510)
+.+...+.+.+.+..... .......++.+++.. |.+......|.+.+. ..|..++++. ....+.+.
T Consensus 243 ~~~~~~v~~~~~~~~~~~--~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~ 320 (443)
T 1hr6_B 243 TLPTTHIAIALEGVSWSA--PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMY 320 (443)
T ss_dssp TCSEEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEE
T ss_pred CccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEE
Confidence 346777777777654322 244555667777743 111122345666665 4555433322 22345667
Q ss_pred Eecc--CCChHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhh-cCCCCCCCCCCChHH
Q 010447 164 FDAL--KTYVPEMVELLIDCV---RNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAG-YSGALANPLLAPESA 237 (510)
Q Consensus 164 ~~~~--~~~l~~~l~ll~~~~---~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 237 (510)
+.+. +++++++++.+.+.+ .+..++++++++.|..+...+.....++...+.......+ ++.+.. .....+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~ 398 (443)
T 1hr6_B 321 IVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS--PEEVFEQ 398 (443)
T ss_dssp EEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC--HHHHHHH
T ss_pred EEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC--HHHHHHH
Confidence 7777 789998888887655 4555999999999999999998877778766655555443 332222 1123477
Q ss_pred hccCCHHHHHHHHHhhcCCCCeEEEEcC
Q 010447 238 INRLNSTLLEEFVAENYTGPRMVLAASG 265 (510)
Q Consensus 238 l~~l~~~~l~~f~~~~~~~~~~~l~i~G 265 (510)
|.++|.++++++.++++.+++++++++|
T Consensus 399 i~~vt~~dv~~~a~~~l~~~~~~~~v~g 426 (443)
T 1hr6_B 399 VDKITKDDIIMWANYRLQNKPVSMVALG 426 (443)
T ss_dssp HHTCCHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHhCCHHHHHHHHHHHhccCCcEEEEEC
Confidence 9999999999999999999999999999
No 34
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.74 E-value=0.00097 Score=67.65 Aligned_cols=167 Identities=15% Similarity=0.120 Sum_probs=112.1
Q ss_pred CceEEEEEEecCCCCCCC--cchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEE
Q 010447 309 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~ 386 (510)
+...+.+.|..+. ..+ .......++.+++..|. ..-|+ ..+...+ +..|.. ++++... + ...
T Consensus 33 ~~~~~~l~~~~Gs--~~e~~~~~Glahllehmlf~GT---~~~~~----~~~~~~l-~~~G~~--~na~t~~--d--~t~ 96 (446)
T 1pp9_A 33 PTCTVGVWIDAGS--RYESEKNNGAGYFVEHLAFKGT---KNRPG----NALEKEV-ESMGAH--LNAYSTR--E--HTA 96 (446)
T ss_dssp SEEEEEEEESCSG--GGCCTTTTTHHHHHHHHTTSCB---SSSTT----THHHHHH-HHTTCE--EEEEECS--S--CEE
T ss_pred CEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCC---CCCCH----HHHHHHH-HHcCCE--EEEEEcC--C--eEE
Confidence 5666677776654 333 34566778888876541 11121 2344333 445543 3444322 2 245
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC--CHHHHHH
Q 010447 387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHFLK 464 (510)
Q Consensus 387 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~ 464 (510)
+++.+.+++..++++.+.+.+.+- .+++++|++.|..+...+....+++...+.......+..+.+. +..-..+
T Consensus 97 ~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 172 (446)
T 1pp9_A 97 YYIKALSKDLPKAVELLADIVQNC----SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSE 172 (446)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHH
T ss_pred EEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 677777788888998888888773 3999999999999999998887888776665555444333322 1122356
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010447 465 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 495 (510)
Q Consensus 465 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 495 (510)
.|+++|.+|++++.++++. ++.+++++||..
T Consensus 173 ~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~ 204 (446)
T 1pp9_A 173 NVRKLSRADLTEYLSRHYKAPRMVLAAAGGLE 204 (446)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred HHHhCCHHHHHHHHHhccCCCCEEEEEEcCCC
Confidence 7888999999999999999 899999999975
No 35
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.65 E-value=0.0013 Score=67.41 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=111.5
Q ss_pred CceEEEEEEecCCCCCCC--cchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEE
Q 010447 309 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (510)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~ 386 (510)
+.+.+.+.+..+. ..+ .......++.+++..|.. .-| ...+...+ +..|..+. ++.+. ....
T Consensus 25 ~~~~~~l~~~~Gs--~~e~~~~~Glah~lehm~f~Gt~---~~~----~~~~~~~l-e~~G~~~n--a~t~~----d~t~ 88 (475)
T 1hr6_A 25 HFSALGLYIDAGS--RFEGRNLKGCTHILDRLAFKSTE---HVE----GRAMAETL-ELLGGNYQ--CTSSR----ENLM 88 (475)
T ss_dssp SSEEEEEEESCCG--GGCTTTTTTHHHHHHHTTTSCBT---TBC----HHHHHHHH-HHTTSCEE--EEECS----SCEE
T ss_pred CEEEEEEEEcccc--CCCCCCCCcHHHHHHHHHhCCCC---CCC----HHHHHHHH-HHcCCEEE--EEEcc----CeEE
Confidence 6777777777664 332 345677788888765410 000 12343333 44565443 33321 2255
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC--CHHHHHH
Q 010447 387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHFLK 464 (510)
Q Consensus 387 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~ 464 (510)
+++.+.+++...+++.+.+.+.+. .+++++|++.|..++..+....+++...+.......+..+.+. +..-..+
T Consensus 89 y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~ 164 (475)
T 1hr6_A 89 YQASVFNQDVGKMLQLMSETVRFP----KITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRG 164 (475)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGG
T ss_pred EEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 677788888888888888777653 4999999999999999998877888877766666555333321 1122346
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010447 465 TVEGVTAKDIASVAQKLLS-SPLTMASYGDV 494 (510)
Q Consensus 465 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~ 494 (510)
.|+++|.+|++++.++++. ++.+++++| .
T Consensus 165 ~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~ 194 (475)
T 1hr6_A 165 LIPSISKYYLLDYRNKFYTPENTVAAFVG-V 194 (475)
T ss_dssp GGGGCCHHHHHHHHHHHCCGGGEEEEEES-S
T ss_pred HHhhcCHHHHHHHHHHhCCcccEEEEEeC-C
Confidence 7899999999999999998 889999999 5
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.36 E-value=0.046 Score=56.01 Aligned_cols=119 Identities=8% Similarity=0.066 Sum_probs=76.2
Q ss_pred cCCeeeEee----cceeEEEEEeccCCChHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHHhh-----CChHHHH
Q 010447 147 IGGNVQASA----SREQMGYSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVS-----NNPQSLL 214 (510)
Q Consensus 147 ~g~~~~~~~----~~~~~~~~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~e~~~~~-----~~p~~~~ 214 (510)
.|..++.+. .++...|.+.+..++++++++.+...+.. -.++++++++.|..++..+.... .++..++
T Consensus 313 ~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a 392 (492)
T 3go9_A 313 KNLKLGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILM 392 (492)
T ss_dssp TTCEEEEEEEEETTEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHH
T ss_pred cccccccCchhhhhhcceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 455444443 33455677778888999988888776654 45999999999999888876532 2344444
Q ss_pred HHHHHHhhcCCCCCCCCC--CC-hHHhccCCHHHHHHHHHhhcCCCCeEEEEcC
Q 010447 215 LEAIHSAGYSGALANPLL--AP-ESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (510)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~--~~-~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G 265 (510)
...+........+..+.. .. .+.|+++|.+++.++.++++.+++..+++.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~ 446 (492)
T 3go9_A 393 SQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQP 446 (492)
T ss_dssp HHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcC
Confidence 444443333222222210 01 1448899999999999999997655444443
No 37
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=23.37 E-value=2e+02 Score=21.44 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHHhcCCCCC-HHHHHHHHhcCCHHHHHHHHHH
Q 010447 437 ESRMVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQK 480 (510)
Q Consensus 437 ~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vT~~di~~~a~~ 480 (510)
++..+.+++|.-.+.+++.+.+ .+++-...+.+..+.+.++.+.
T Consensus 26 EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt 70 (104)
T 2v75_A 26 EDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQT 70 (104)
T ss_dssp SCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred ccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHH
Confidence 5667778888766665555554 3566667778888866666543
Done!