BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010448
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/498 (70%), Positives = 404/498 (81%)
Query: 13 IQANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFL 72
+ ANGHRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+KRGVDRVF+DHP FL
Sbjct: 39 MAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFL 98
Query: 73 AKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFV 132
KVWGKT KIYGP TG DY+DNQ+RFSLLCQAALEAPRILNLN+N YF G YGEDVVFV
Sbjct: 99 EKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFV 158
Query: 133 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFD 192
NDWHT + YLK Y+P G+Y++AKV FCIHNI+YQGRFAFED+ LNL +F+SSFD
Sbjct: 159 CNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFD 218
Query: 193 FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGI 252
FIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+EL+SG +G ELDNI+R TGI GI
Sbjct: 219 FIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGI 278
Query: 253 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEE 312
VNGMDV EW+P DKYI KYDA+T ++AK L KEALQAE GLPVDR IP+I FIGRLEE
Sbjct: 279 VNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEE 338
Query: 313 QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMI 372
QKG D++AAAIP ++E+VQI++LGTGKK EK L+ +E YP K R V KFN PLAH+I
Sbjct: 339 QKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLI 398
Query: 373 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEA 432
+AGAD + +PSRFEPCGLIQL MRYGT ASTGGLVDTV EG TGF MG SVDC+
Sbjct: 399 MAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKV 458
Query: 433 VDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEP 492
V+P DV V+ T++RA+ GT A EM++N M QDLSWKGPAK WE LL L VAGS P
Sbjct: 459 VEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAP 518
Query: 493 GIDGEEIAPLAKENVATP 510
GI+G+EIAPLAKENVA P
Sbjct: 519 GIEGDEIAPLAKENVAAP 536
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 235/467 (50%), Gaps = 35/467 (7%)
Query: 13 IQANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKI-EKVRFFHCHKRGVDRVFVDHPWF 71
++A+G R T+ P Y K A TD V + D + EK +D + +D P +
Sbjct: 30 LEAHGVRTRTLIPGYPAVKAAV-TDPVKCFEFTDLLGEKADLLEVQHERLDLLILDAPAY 88
Query: 72 LAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVF 131
+ G Y +TG+DY DN RF+ L +L A RI G + D+V
Sbjct: 89 YERSGGP-----YLGQTGKDYPDNWKRFAAL---SLAAARI----GAGVLPG-WRPDMVH 135
Query: 132 VANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSF 191
A+DW ++ P Y++ P+ + IHNIA+QG+F F L LPA
Sbjct: 136 -AHDWQAAMTPVYMRYAETPE-----IPSLLTIHNIAFQGQFGANIFSKLALPAH-AFGM 188
Query: 192 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGI 249
+ I+ YN ++++K G+ + + TVSP YA+E+++ E G+ L+ +I R +
Sbjct: 189 EGIEYYND------VSFLKGGLQTATALSTVSPSYAEEILTAE-FGMGLEGVIGSRAHVL 241
Query: 250 KGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGR 309
GIVNG+D WNP TD I Y A+ + + + L K+A+ + D P+ I R
Sbjct: 242 HGIVNGIDADVWNPATDHLIHDNYSAANLKN-RALNKKAVAEHFRID-DDGSPLFCVISR 299
Query: 310 LEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 369
L QKG D++A A+ + +++VLG G +E L + + +N PL+
Sbjct: 300 LTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLS 359
Query: 370 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 429
H++ AG D I+IPSRFEPCGL QL+A+RYG +P+VA TGGL DTV + + S +
Sbjct: 360 HLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDA-NHAALASKAAT 418
Query: 430 CEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 475
PV + + +RR + Y L +M K GM D+SW+ A
Sbjct: 419 GVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSA 465
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 201 bits (511), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 132/404 (32%), Positives = 201/404 (49%), Gaps = 38/404 (9%)
Query: 92 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 151
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 152 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 211
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 212 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 268
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 269 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 328
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 329 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC 388
+ Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRFEPC
Sbjct: 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPC 379
Query: 389 GLIQLHAMRYGTVPIVASTGGLVDTVEEGFT-----GFQMGSFSVDCEAVDPVDVAAVST 443
GL QL+ ++YGT+P+V TGGL DTV + G G D A ++
Sbjct: 380 GLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGVASGFVFEDSNAW------SLLR 433
Query: 444 TVRRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEETLLNLE 486
+RRA + +L + + MA D SW+ AK + E L+
Sbjct: 434 AIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 201 bits (511), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 133/405 (32%), Positives = 202/405 (49%), Gaps = 38/405 (9%)
Query: 92 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 151
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 152 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 211
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 212 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 268
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 269 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 328
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 329 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC 388
+ Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRFEPC
Sbjct: 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPC 379
Query: 389 GLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVST 443
GL QL+ ++YGT+P+V TGGL DTV E G G D A ++
Sbjct: 380 GLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLR 433
Query: 444 TVRRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEETLLNLEV 487
+RRA + +L + + MA D SW+ AK + E L++
Sbjct: 434 AIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLKL 478
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 201/405 (49%), Gaps = 38/405 (9%)
Query: 92 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 151
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 152 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 211
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 212 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 268
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 269 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 328
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 329 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC 388
+ Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRF PC
Sbjct: 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFAPC 379
Query: 389 GLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVST 443
GL QL+ ++YGT+P+V TGGL DTV E G G D A ++
Sbjct: 380 GLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAW------SLLR 433
Query: 444 TVRRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEETLLNLEV 487
+RRA + +L + + MA D SW+ AK + E L++
Sbjct: 434 AIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLKL 478
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 227/467 (48%), Gaps = 35/467 (7%)
Query: 13 IQANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKI-EKVRFFHCHKRGVDRVFVDHPWF 71
++A+G R T+ P Y K A TD V + D + EK +D + +D P +
Sbjct: 30 LEAHGVRTRTLIPGYPAVKAAV-TDPVKCFEFTDLLGEKADLLEVQHERLDLLILDAPAY 88
Query: 72 LAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVF 131
+ G Y +TG+DY DN RF+ L +L A RI G + D V
Sbjct: 89 YERSGGP-----YLGQTGKDYPDNWKRFAAL---SLAAARI----GAGVLPG-WRPDXVH 135
Query: 132 VANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSF 191
A+DW + P Y + P+ + IHNIA+QG+F F L LPA
Sbjct: 136 -AHDWQAAXTPVYXRYAETPE-----IPSLLTIHNIAFQGQFGANIFSKLALPAH-AFGX 188
Query: 192 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGI 249
+ I+ YN ++++K G+ + + TVSP YA+E+++ E G L+ +I R +
Sbjct: 189 EGIEYYND------VSFLKGGLQTATALSTVSPSYAEEILTAE-FGXGLEGVIGSRAHVL 241
Query: 250 KGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGR 309
GIVNG+D WNP TD I Y A+ + + + L K+A+ + D P+ I R
Sbjct: 242 HGIVNGIDADVWNPATDHLIHDNYSAANLKN-RALNKKAVAEHFRID-DDGSPLFCVISR 299
Query: 310 LEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 369
L QKG D+ A A+ + +++VLG G +E L + + +N PL+
Sbjct: 300 LTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLS 359
Query: 370 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 429
H+ AG D I+IPSRFEPCGL QL+A+RYG +P+VA TGGL DTV + + S +
Sbjct: 360 HLXQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDA-NHAALASKAAT 418
Query: 430 CEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 475
PV + + +RR + Y L + K G D+SW+ A
Sbjct: 419 GVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQXQKLGXKSDVSWEKSA 465
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 54/288 (18%)
Query: 134 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 191
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 130 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 182
Query: 192 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 251
+ GY +D+V TVS Y D+ N K I
Sbjct: 183 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 217
Query: 252 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 311
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 218 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 262
Query: 312 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 366
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 263 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 322
Query: 367 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 414
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 323 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 370
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 54/288 (18%)
Query: 134 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 191
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 129 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 181
Query: 192 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 251
+ GY +D+V TVS Y D+ N K I
Sbjct: 182 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 216
Query: 252 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 311
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 217 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 261
Query: 312 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 366
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 262 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 321
Query: 367 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 414
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 322 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 369
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 54/288 (18%)
Query: 134 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 191
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 129 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 181
Query: 192 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 251
+ GY +D+V TVS Y D+ N K I
Sbjct: 182 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 216
Query: 252 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 311
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 217 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 261
Query: 312 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 366
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 262 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 321
Query: 367 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 414
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 322 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 369
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 254 NGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEE- 312
NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 4 NGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFDRG 48
Query: 313 QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPL 368
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 49 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREF 108
Query: 369 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 414
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 109 VRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 154
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 49/198 (24%)
Query: 249 IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIG 308
I + G DV+ ++P D+ E + E+G+P+ + V+ F+G
Sbjct: 190 ISVVSPGADVELYSPGNDR-----------------ATERSRRELGIPL--HTKVVAFVG 230
Query: 309 RLEEQKGSDILAAAIPHFIKE----NVQIIVLGTGKKP---------------MEKQLEQ 349
RL+ KG +L A+ N+++I+ G P +EK++
Sbjct: 231 RLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 290
Query: 350 LEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 409
L+ P + V + AD + +PS E GL+ + A GT I A GG
Sbjct: 291 LDPRPPSELVAVYR-----------AADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG 339
Query: 410 LVDTVEEGFTGFQMGSFS 427
L V EG TG + S
Sbjct: 340 LPIAVAEGETGLLVDGHS 357
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 49/198 (24%)
Query: 249 IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIG 308
I + G DV+ ++P D+ E + E+G+P+ + V+ F+G
Sbjct: 210 ISVVSPGADVELYSPGNDR-----------------ATERSRRELGIPL--HTKVVAFVG 250
Query: 309 RLEEQKGSDILAAAIPHFIKE----NVQIIVLGTGKKP---------------MEKQLEQ 349
RL+ KG +L A+ N+++I+ G P +EK++
Sbjct: 251 RLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 310
Query: 350 LEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 409
L+ P + V + AD + +PS E GL+ + A GT I A GG
Sbjct: 311 LDPRPPSELVAVYR-----------AADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG 359
Query: 410 LVDTVEEGFTGFQMGSFS 427
L V EG TG + S
Sbjct: 360 LPIAVAEGETGLLVDGHS 377
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 274 DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI--KENV 331
D A P K A + ++G PVI RL +KG D L A+P I + +
Sbjct: 173 DVKRFTPATPEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR------- 384
Q++++G+G+ E L +L + + + + +A AD +P+R
Sbjct: 231 QLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 385 FEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVD 429
E G++ L A G VP++A T GG +TV TG + VD
Sbjct: 289 VEGLGIVYLEAQACG-VPVIAGTSGGAPETVTPA-TGLVVEGSDVD 332
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 274 DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI--KENV 331
D A P K A + ++G PVI RL +KG D L A+P I + +
Sbjct: 173 DVKRFTPATPEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR------- 384
Q++++G+G+ E L +L + + + + +A AD +P+R
Sbjct: 231 QLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 385 FEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVD 429
E G++ L A G VP++A T GG +TV TG + VD
Sbjct: 289 VEGLGIVYLEAQACG-VPVIAGTSGGAPETVTPA-TGLVVEGSDVD 332
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 372 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCE 431
++A +D +L+ S E GL+ L AM G I GG+ + ++ G TG+ CE
Sbjct: 281 LLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYL-------CE 333
Query: 432 AVDPVDVA 439
D VA
Sbjct: 334 VGDTTGVA 341
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 372 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCE 431
++A +D +L+ S E GL+ L AM G I GG+ + ++ G TG+ CE
Sbjct: 301 LLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYL-------CE 353
Query: 432 AVDPVDVA 439
D VA
Sbjct: 354 VGDTTGVA 361
>pdb|2F2L|X Chain X, Crystal Structure Of Tracheal Cytotoxin (Tct) Bound To The
Ectodomain Complex Of Peptidoglycan Recognition Proteins
Lca (Pgrp-Lca) And Lcx (Pgrp-Lcx)
Length = 167
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 303 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT--GKKPMEKQLEQLEILYPEKAR 359
++G GR+ E +G D + A + + ++ I +GT +KP E+QLE ++L E R
Sbjct: 69 LVGGDGRVYEGRGWDYVGAHTKGYNRGSIGISFIGTFTTRKPNERQLEACQLLLQEGVR 127
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 369 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSV 428
A++ G+ F L S +EP GL + AM G +V GG + ++ G G
Sbjct: 353 AYLASKGSVFALT-SFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGV------- 404
Query: 429 DCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKWEETL 482
VDP D ++ + +A + T A E K + + +W+ A+ + E +
Sbjct: 405 ---LVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVI 456
>pdb|1OKB|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
pdb|1OKB|B Chain B, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
Length = 223
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 194 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE--LDNIIR 245
IDG+ P G W K G+L + VLTV H A S +D+G E D +I+
Sbjct: 100 IDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKDRGWETFTDAVIK 150
>pdb|3SDY|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
Length = 216
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 374 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 412
+G DF L SR EP + +YGT P G V+
Sbjct: 69 SGTDFTLTISRLEPADFAVYYCQQYGTSPRTFGQGAKVE 107
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 180 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 234
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 235 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 267
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1UUG|C Chain C, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1LQG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQJ|A Chain A, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|B Chain B, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|C Chain C, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|D Chain D, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQM|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|C Chain C, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|E Chain E, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|G Chain G, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 229
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 180 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 234
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 235 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 267
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
pdb|3EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 180 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 234
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 235 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 267
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
pdb|5EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
Length = 229
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 180 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 234
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 235 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 267
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap
Length = 228
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 180 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 234
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 235 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 267
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1EUI|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 228
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 180 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 234
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 235 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 267
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|3UF7|A Chain A, Co-Crystal Structure Of Escherichia Coli Uracil-Dna
Glycosylase And A C-Terminal Fragement Of The
Single-Stranded Dna-Binding Protein
Length = 237
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 180 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 234
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 235 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 267
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
pdb|2UUG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
Length = 229
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 180 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 234
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 235 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 284
DK + L N R+ G+ ++ G Q+ + DK ++ D PL
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDKQ---RHHVLKAPDPSPL 191
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase
D183gK302R MUTANT
Length = 223
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 194 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE 239
I+G+ P G W K G+L + VLTV H A S +++G E
Sbjct: 100 IEGFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKERGWE 142
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 306 FIGRLEE-QKGSDILAAAIPHFIKE--NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVA 362
F+GR +E +KG +L AA+P + +V+I+++G G E +L + R +
Sbjct: 213 FLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGD---EDELREQAGDLAGHLRFLG 269
Query: 363 KFNIPLAHMIIAGADFILIPSR-FEPCGLIQLHAMRYGTVPIVAS 406
+ + + AD P E G++ + AM GT +VAS
Sbjct: 270 QVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTA-VVAS 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,939,034
Number of Sequences: 62578
Number of extensions: 708212
Number of successful extensions: 1568
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1521
Number of HSP's gapped (non-prelim): 35
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)