Query 010448
Match_columns 510
No_of_seqs 253 out of 3666
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 100.0 6.7E-72 2.3E-76 587.7 48.6 506 5-510 31-536 (536)
2 2qzs_A Glycogen synthase; glyc 100.0 9.1E-47 3.1E-51 394.9 42.5 446 3-489 20-480 (485)
3 1rzu_A Glycogen synthase 1; gl 100.0 7.3E-47 2.5E-51 395.6 41.2 444 3-489 20-479 (485)
4 3fro_A GLGA glycogen synthase; 100.0 8.1E-45 2.8E-49 374.3 38.7 403 4-488 22-433 (439)
5 3c48_A Predicted glycosyltrans 100.0 1.8E-39 6.2E-44 334.9 34.7 371 4-490 46-430 (438)
6 2jjm_A Glycosyl transferase, g 100.0 1.8E-39 6.2E-44 330.3 29.6 353 3-489 30-389 (394)
7 2r60_A Glycosyl transferase, g 100.0 7.8E-39 2.7E-43 336.0 35.1 390 4-491 37-465 (499)
8 3s28_A Sucrose synthase 1; gly 100.0 2.2E-39 7.4E-44 351.3 26.3 400 7-486 317-770 (816)
9 3okp_A GDP-mannose-dependent a 100.0 2.2E-38 7.6E-43 321.6 29.5 345 4-488 23-382 (394)
10 2x6q_A Trehalose-synthase TRET 100.0 1.1E-35 3.9E-40 304.5 29.2 276 126-486 126-415 (416)
11 2gek_A Phosphatidylinositol ma 100.0 4.9E-36 1.7E-40 305.7 24.4 275 126-490 107-388 (406)
12 3oy2_A Glycosyltransferase B73 100.0 1.2E-35 4.1E-40 304.0 27.3 278 126-490 81-395 (413)
13 2iw1_A Lipopolysaccharide core 100.0 4.1E-37 1.4E-41 310.2 13.9 229 215-486 136-372 (374)
14 3nb0_A Glycogen [starch] synth 100.0 5.7E-36 1.9E-40 310.3 21.7 343 92-488 156-636 (725)
15 2iuy_A Avigt4, glycosyltransfe 100.0 2.8E-35 9.5E-40 293.6 23.9 208 216-489 120-339 (342)
16 2x0d_A WSAF; GT4 family, trans 100.0 7.4E-32 2.5E-36 275.0 13.4 271 126-487 132-411 (413)
17 1uqt_A Alpha, alpha-trehalose- 100.0 4.3E-29 1.5E-33 258.0 27.3 286 127-485 124-454 (482)
18 2hy7_A Glucuronosyltransferase 100.0 4.8E-31 1.6E-35 269.0 12.4 201 207-486 170-380 (406)
19 1f0k_A MURG, UDP-N-acetylgluco 100.0 1.6E-28 5.5E-33 246.6 25.3 322 6-486 23-358 (364)
20 3t5t_A Putative glycosyltransf 99.9 2.5E-26 8.5E-31 234.7 26.1 295 127-488 149-476 (496)
21 2bfw_A GLGA glycogen synthase; 99.9 1E-26 3.4E-31 213.2 20.7 182 252-464 2-192 (200)
22 3beo_A UDP-N-acetylglucosamine 99.9 1E-26 3.4E-31 234.4 21.7 270 126-483 95-374 (375)
23 1vgv_A UDP-N-acetylglucosamine 99.9 5.6E-27 1.9E-31 237.1 17.7 283 126-488 86-379 (384)
24 2vsy_A XCC0866; transferase, g 99.9 9.7E-26 3.3E-30 240.1 21.7 213 215-491 328-565 (568)
25 2c4m_A Glycogen phosphorylase; 99.9 1.3E-25 4.3E-30 236.7 17.0 348 126-487 289-721 (796)
26 3qhp_A Type 1 capsular polysac 99.9 2.6E-25 8.8E-30 197.4 15.5 160 301-477 2-166 (166)
27 1l5w_A Maltodextrin phosphoryl 99.9 2.3E-25 7.9E-30 234.7 16.9 340 126-487 299-732 (796)
28 2gj4_A Glycogen phosphorylase, 99.9 1.5E-23 5.1E-28 221.7 20.4 341 127-487 321-756 (824)
29 1v4v_A UDP-N-acetylglucosamine 99.9 3.4E-22 1.2E-26 201.4 27.3 220 212-488 143-367 (376)
30 2f9f_A First mannosyl transfer 99.9 4.3E-22 1.5E-26 178.7 16.8 142 299-453 21-164 (177)
31 2xci_A KDO-transferase, 3-deox 99.9 8.8E-21 3E-25 190.8 18.9 199 208-465 146-360 (374)
32 3rhz_A GTF3, nucleotide sugar 99.8 3E-20 1E-24 183.2 20.0 193 208-476 126-327 (339)
33 3dzc_A UDP-N-acetylglucosamine 99.8 8.6E-18 2.9E-22 170.2 20.3 228 209-482 159-394 (396)
34 3otg_A CALG1; calicheamicin, T 99.8 7.9E-18 2.7E-22 171.5 16.6 160 300-484 242-409 (412)
35 3ot5_A UDP-N-acetylglucosamine 99.8 3.8E-17 1.3E-21 165.6 21.3 221 214-487 168-393 (403)
36 3s2u_A UDP-N-acetylglucosamine 99.7 3.8E-15 1.3E-19 149.1 26.6 161 302-483 182-356 (365)
37 4fzr_A SSFS6; structural genom 99.6 3.5E-15 1.2E-19 151.3 15.8 152 300-479 227-396 (398)
38 2iyf_A OLED, oleandomycin glyc 99.6 2.5E-14 8.7E-19 146.4 22.0 161 300-486 232-402 (430)
39 4hwg_A UDP-N-acetylglucosamine 99.5 6.7E-14 2.3E-18 140.6 16.4 195 210-452 140-343 (385)
40 3ia7_A CALG4; glycosysltransfe 99.5 6.5E-13 2.2E-17 134.4 23.8 157 300-484 231-399 (402)
41 3oti_A CALG3; calicheamicin, T 99.5 2E-13 7E-18 138.2 19.4 154 300-482 232-396 (398)
42 3tsa_A SPNG, NDP-rhamnosyltran 99.5 6.5E-14 2.2E-18 141.4 12.2 157 301-482 219-387 (391)
43 3rsc_A CALG2; TDP, enediyne, s 99.4 4.1E-12 1.4E-16 129.3 19.9 157 300-484 247-414 (415)
44 2p6p_A Glycosyl transferase; X 99.4 1.4E-11 4.7E-16 124.0 20.8 153 301-482 211-378 (384)
45 2iya_A OLEI, oleandomycin glyc 99.1 3.7E-08 1.3E-12 100.3 24.9 157 300-482 255-420 (424)
46 3q3e_A HMW1C-like glycosyltran 99.0 3.4E-09 1.2E-13 110.1 16.0 175 293-487 433-625 (631)
47 1ygp_A Yeast glycogen phosphor 99.0 4.6E-08 1.6E-12 103.5 24.4 295 127-424 360-760 (879)
48 3h4t_A Glycosyltransferase GTF 99.0 2.6E-08 8.7E-13 100.8 19.5 126 300-450 221-351 (404)
49 2o6l_A UDP-glucuronosyltransfe 98.9 3.7E-09 1.3E-13 93.3 10.8 122 301-451 22-154 (170)
50 4amg_A Snogd; transferase, pol 98.9 2.5E-08 8.6E-13 100.5 17.1 154 301-480 238-397 (400)
51 2yjn_A ERYCIII, glycosyltransf 98.7 3.9E-08 1.3E-12 100.7 11.1 154 301-482 268-434 (441)
52 1iir_A Glycosyltransferase GTF 98.3 2.7E-06 9.3E-11 86.1 10.9 155 301-488 239-401 (415)
53 1rrv_A Glycosyltransferase GTF 98.0 1.3E-05 4.5E-10 81.0 9.8 155 301-487 238-401 (416)
54 4gyw_A UDP-N-acetylglucosamine 98.0 0.00022 7.6E-09 77.1 18.5 179 290-488 514-708 (723)
55 1psw_A ADP-heptose LPS heptosy 96.6 0.015 5E-07 56.8 12.1 114 286-407 167-288 (348)
56 3hbm_A UDP-sugar hydrolase; PS 96.3 0.014 4.9E-07 55.1 9.2 94 302-407 159-252 (282)
57 3hbf_A Flavonoid 3-O-glucosylt 95.7 0.072 2.5E-06 54.0 11.9 136 301-451 274-414 (454)
58 2c1x_A UDP-glucose flavonoid 3 95.6 0.044 1.5E-06 55.7 9.9 132 301-451 272-412 (456)
59 3l7i_A Teichoic acid biosynthe 95.2 0.087 3E-06 57.0 11.2 197 213-451 476-683 (729)
60 2pq6_A UDP-glucuronosyl/UDP-gl 94.9 0.15 5.2E-06 52.1 11.5 133 301-451 296-439 (482)
61 3tov_A Glycosyl transferase fa 94.7 0.23 7.9E-06 48.3 11.8 116 288-411 174-292 (349)
62 2vch_A Hydroquinone glucosyltr 94.4 0.43 1.5E-05 48.7 13.4 136 301-450 269-428 (480)
63 2acv_A Triterpene UDP-glucosyl 93.9 0.65 2.2E-05 47.1 13.4 137 301-450 277-424 (463)
64 2gt1_A Lipopolysaccharide hept 92.0 1.2 4E-05 42.6 11.7 99 301-406 179-279 (326)
65 2jzc_A UDP-N-acetylglucosamine 88.1 0.59 2E-05 42.2 5.3 38 367-408 123-161 (224)
66 3grc_A Sensor protein, kinase; 71.9 34 0.0012 26.9 10.7 109 330-451 6-127 (140)
67 1rcu_A Conserved hypothetical 68.8 52 0.0018 28.6 11.1 129 314-448 42-192 (195)
68 3gd5_A Otcase, ornithine carba 64.1 47 0.0016 31.4 10.5 129 212-384 100-234 (323)
69 2zay_A Response regulator rece 62.8 42 0.0014 26.6 9.1 109 330-451 8-128 (147)
70 4f3y_A DHPR, dihydrodipicolina 58.3 11 0.00038 34.8 5.0 44 369-412 67-110 (272)
71 3gt7_A Sensor protein; structu 56.6 71 0.0024 25.6 9.5 109 330-451 7-127 (154)
72 3t6k_A Response regulator rece 56.5 69 0.0024 25.0 10.7 108 331-451 5-124 (136)
73 3kht_A Response regulator; PSI 56.4 71 0.0024 25.1 12.2 111 330-451 5-128 (144)
74 3heb_A Response regulator rece 54.8 79 0.0027 25.1 11.2 109 330-451 4-135 (152)
75 2pln_A HP1043, response regula 54.7 67 0.0023 25.0 8.9 106 330-451 18-133 (137)
76 2iz6_A Molybdenum cofactor car 53.2 43 0.0015 28.6 7.5 125 313-451 28-174 (176)
77 1k68_A Phytochrome response re 52.6 78 0.0027 24.4 11.8 110 331-451 3-131 (140)
78 3ehd_A Uncharacterized conserv 52.6 19 0.00065 30.3 5.1 36 371-406 65-104 (162)
79 3hdg_A Uncharacterized protein 51.9 81 0.0028 24.4 10.5 109 330-451 7-125 (137)
80 3cg4_A Response regulator rece 51.7 83 0.0028 24.5 10.0 110 329-451 6-127 (142)
81 3n53_A Response regulator rece 51.5 84 0.0029 24.5 9.8 107 331-451 4-122 (140)
82 3jte_A Response regulator rece 51.0 86 0.003 24.5 11.8 108 331-451 4-123 (143)
83 3hzh_A Chemotaxis response reg 50.4 97 0.0033 24.9 10.6 107 331-449 37-155 (157)
84 3hdv_A Response regulator; PSI 49.4 89 0.003 24.1 10.4 109 330-451 7-127 (136)
85 3h1g_A Chemotaxis protein CHEY 49.3 87 0.003 24.0 11.9 109 330-450 5-126 (129)
86 4e7p_A Response regulator; DNA 47.9 1E+02 0.0035 24.4 11.2 110 331-451 21-140 (150)
87 4dad_A Putative pilus assembly 47.6 61 0.0021 25.6 7.6 68 374-451 66-141 (146)
88 1oth_A Protein (ornithine tran 46.3 1.7E+02 0.0059 27.4 11.2 130 210-383 96-231 (321)
89 3vnd_A TSA, tryptophan synthas 45.4 1.6E+02 0.0055 26.8 10.6 114 306-424 100-235 (267)
90 3cnb_A DNA-binding response re 44.5 1.1E+02 0.0037 23.7 10.8 110 330-452 8-131 (143)
91 2qzj_A Two-component response 44.2 1.1E+02 0.0038 23.7 8.7 109 330-451 4-121 (136)
92 3ijp_A DHPR, dihydrodipicolina 43.3 19 0.00066 33.5 4.0 43 369-411 82-124 (288)
93 3nav_A Tryptophan synthase alp 42.8 1.4E+02 0.0048 27.3 9.8 117 302-424 99-237 (271)
94 3h5i_A Response regulator/sens 42.7 1.2E+02 0.004 23.6 13.0 109 330-451 5-124 (140)
95 2qsj_A DNA-binding response re 42.3 1.3E+02 0.0043 23.9 10.2 111 330-451 3-124 (154)
96 1i3c_A Response regulator RCP1 42.2 1.3E+02 0.0043 23.8 12.1 111 330-451 8-137 (149)
97 3m6m_D Sensory/regulatory prot 39.5 1.4E+02 0.0047 23.5 9.6 109 330-451 14-136 (143)
98 1k66_A Phytochrome response re 39.4 1.3E+02 0.0046 23.3 11.3 109 330-451 6-138 (149)
99 1qkk_A DCTD, C4-dicarboxylate 39.3 1.4E+02 0.0049 23.6 9.7 108 331-451 4-121 (155)
100 3nhm_A Response regulator; pro 39.0 1.3E+02 0.0044 23.0 12.3 107 331-451 5-122 (133)
101 4fyk_A Deoxyribonucleoside 5'- 38.9 31 0.0011 28.7 4.2 34 371-405 64-100 (152)
102 3ilh_A Two component response 38.9 1.3E+02 0.0046 23.2 11.5 111 330-451 9-139 (146)
103 1rrv_A Glycosyltransferase GTF 38.8 16 0.00054 35.8 2.9 21 6-26 17-37 (416)
104 2j48_A Two-component sensor ki 38.4 1.2E+02 0.004 22.3 7.8 105 332-449 3-116 (119)
105 3eul_A Possible nitrate/nitrit 38.1 1.5E+02 0.005 23.4 11.2 111 330-451 15-135 (152)
106 2pq6_A UDP-glucuronosyl/UDP-gl 38.0 17 0.00057 36.7 3.0 21 6-26 25-45 (482)
107 1iir_A Glycosyltransferase GTF 37.5 17 0.00058 35.6 2.9 21 6-26 17-37 (415)
108 3tpf_A Otcase, ornithine carba 36.9 2.3E+02 0.0078 26.4 10.3 130 210-383 86-222 (307)
109 2yjn_A ERYCIII, glycosyltransf 36.7 17 0.00058 36.0 2.7 21 6-26 37-57 (441)
110 3cfy_A Putative LUXO repressor 36.6 1.5E+02 0.005 23.0 9.5 107 332-451 6-122 (137)
111 2qr3_A Two-component system re 36.6 1.2E+02 0.0042 23.3 7.7 108 331-451 4-126 (140)
112 3bq9_A Predicted rossmann fold 36.4 3.3E+02 0.011 26.9 14.5 69 371-451 241-332 (460)
113 3f6c_A Positive transcription 36.2 1.4E+02 0.0049 22.7 10.0 110 331-451 2-120 (134)
114 3r0j_A Possible two component 35.8 2.2E+02 0.0077 24.9 11.1 109 330-451 23-141 (250)
115 3p2y_A Alanine dehydrogenase/p 35.8 1.6E+02 0.0054 28.5 9.3 45 368-412 258-310 (381)
116 3hv2_A Response regulator/HD d 35.6 1.6E+02 0.0056 23.2 10.3 109 330-451 14-133 (153)
117 2qxy_A Response regulator; reg 35.5 1.4E+02 0.0048 23.1 7.9 108 330-451 4-121 (142)
118 2i6u_A Otcase, ornithine carba 35.4 2E+02 0.0069 26.8 9.7 132 210-384 89-226 (307)
119 1p9l_A Dihydrodipicolinate red 34.9 1.1E+02 0.0036 27.6 7.6 78 332-412 2-82 (245)
120 3lua_A Response regulator rece 34.6 1.6E+02 0.0054 22.7 8.5 109 330-451 4-127 (140)
121 4ep1_A Otcase, ornithine carba 33.7 1.9E+02 0.0065 27.4 9.3 131 210-384 120-256 (340)
122 3f6p_A Transcriptional regulat 33.4 1.5E+02 0.0052 22.2 9.1 107 331-450 3-118 (120)
123 1mb3_A Cell division response 33.3 1.5E+02 0.0051 22.1 10.8 106 332-450 3-120 (124)
124 3kb6_A D-lactate dehydrogenase 32.2 1.3E+02 0.0046 28.3 8.2 78 331-410 142-234 (334)
125 3crn_A Response regulator rece 32.2 1.7E+02 0.0058 22.4 10.5 108 331-451 4-121 (132)
126 3c97_A Signal transduction his 32.2 1.7E+02 0.006 22.5 12.1 108 331-451 11-130 (140)
127 1jbe_A Chemotaxis protein CHEY 32.1 1.6E+02 0.0055 22.1 10.0 108 330-450 4-124 (128)
128 1ys7_A Transcriptional regulat 31.6 2.4E+02 0.0084 24.1 12.3 109 330-451 7-125 (233)
129 2f62_A Nucleoside 2-deoxyribos 31.5 2.2E+02 0.0077 23.6 9.4 37 371-407 63-106 (161)
130 3cg0_A Response regulator rece 31.5 1.8E+02 0.006 22.3 10.0 110 330-451 9-128 (140)
131 2khz_A C-MYC-responsive protei 31.4 47 0.0016 27.9 4.3 35 371-406 73-110 (165)
132 3eod_A Protein HNR; response r 31.4 1.7E+02 0.0058 22.1 8.7 109 330-451 7-126 (130)
133 1fy2_A Aspartyl dipeptidase; s 31.2 1.2E+02 0.0043 26.7 7.3 97 310-408 11-122 (229)
134 3rqi_A Response regulator prot 30.8 1.8E+02 0.0061 24.1 8.1 109 330-451 7-125 (184)
135 1pvv_A Otcase, ornithine carba 30.1 2.3E+02 0.008 26.5 9.2 129 212-384 98-232 (315)
136 2w37_A Ornithine carbamoyltran 29.8 2.4E+02 0.0081 27.0 9.3 132 210-384 117-254 (359)
137 4ekn_B Aspartate carbamoyltran 29.7 1.4E+02 0.0049 27.8 7.7 140 210-389 91-233 (306)
138 3gl9_A Response regulator; bet 29.6 1.8E+02 0.0061 21.9 11.9 106 332-450 4-121 (122)
139 1zgz_A Torcad operon transcrip 29.4 1.7E+02 0.006 21.7 10.2 108 331-451 3-119 (122)
140 3to5_A CHEY homolog; alpha(5)b 29.4 2.1E+02 0.0073 22.7 9.8 110 329-450 11-132 (134)
141 2gwr_A DNA-binding response re 29.2 2.8E+02 0.0095 23.9 10.8 108 331-451 6-122 (238)
142 3kyj_B CHEY6 protein, putative 28.9 2E+02 0.0069 22.3 7.8 92 330-423 13-117 (145)
143 2vch_A Hydroquinone glucosyltr 28.9 24 0.00081 35.6 2.3 22 6-27 23-45 (480)
144 2gk4_A Conserved hypothetical 28.3 25 0.00086 31.5 2.1 19 8-26 34-52 (232)
145 2pju_A Propionate catabolism o 28.1 1.5E+02 0.0053 26.1 7.3 53 317-371 93-145 (225)
146 1zq6_A Otcase, ornithine carba 27.6 2.3E+02 0.0078 27.1 8.8 91 286-384 176-274 (359)
147 1vlv_A Otcase, ornithine carba 27.6 2.6E+02 0.009 26.2 9.1 132 210-384 108-245 (325)
148 3kcn_A Adenylate cyclase homol 27.3 2.2E+02 0.0077 22.2 12.5 108 330-451 4-123 (151)
149 1ydh_A AT5G11950; structural g 26.6 3.2E+02 0.011 23.8 10.1 95 313-410 24-146 (216)
150 4dio_A NAD(P) transhydrogenase 26.5 2.8E+02 0.0095 27.0 9.3 46 368-413 268-321 (405)
151 4g65_A TRK system potassium up 26.4 2.6E+02 0.0087 27.7 9.4 104 313-416 218-344 (461)
152 2oqr_A Sensory transduction pr 26.1 2.7E+02 0.0093 23.7 8.8 108 331-451 5-121 (230)
153 4had_A Probable oxidoreductase 25.9 87 0.003 29.6 5.7 92 302-406 24-117 (350)
154 3uuw_A Putative oxidoreductase 25.9 1.3E+02 0.0045 27.7 6.8 91 302-406 7-97 (308)
155 3kto_A Response regulator rece 25.8 92 0.0032 24.1 5.1 109 330-451 6-126 (136)
156 3q9s_A DNA-binding response re 25.5 2.6E+02 0.0089 24.6 8.6 107 331-450 38-153 (249)
157 3b2n_A Uncharacterized protein 25.5 2.2E+02 0.0076 21.6 11.5 110 331-451 4-123 (133)
158 1zh2_A KDP operon transcriptio 25.5 2E+02 0.007 21.1 9.2 107 332-451 3-118 (121)
159 3lkv_A Uncharacterized conserv 25.3 3.9E+02 0.013 24.3 12.1 92 316-407 126-228 (302)
160 1srr_A SPO0F, sporulation resp 25.0 2.1E+02 0.0073 21.3 9.5 107 331-450 4-120 (124)
161 1duv_G Octase-1, ornithine tra 24.5 3.1E+02 0.011 25.9 9.0 130 213-384 97-233 (333)
162 3cu5_A Two component transcrip 24.4 2.5E+02 0.0084 21.7 11.4 108 332-451 4-123 (141)
163 2rjn_A Response regulator rece 24.4 2.6E+02 0.0088 21.9 9.9 109 330-451 7-126 (154)
164 1p2f_A Response regulator; DRR 24.2 2.9E+02 0.01 23.3 8.6 106 332-451 4-117 (220)
165 2hqr_A Putative transcriptiona 24.2 2.1E+02 0.007 24.4 7.5 104 332-451 2-115 (223)
166 2qip_A Protein of unknown func 23.9 97 0.0033 25.8 5.0 67 312-381 90-158 (165)
167 1xhf_A DYE resistance, aerobic 23.8 2.3E+02 0.0077 21.0 10.4 108 331-451 4-120 (123)
168 2pl1_A Transcriptional regulat 23.6 2.2E+02 0.0076 20.9 11.0 107 332-451 2-118 (121)
169 2jba_A Phosphate regulon trans 23.5 2.3E+02 0.0079 21.1 8.2 107 332-451 4-122 (127)
170 2a9o_A Response regulator; ess 23.4 2.2E+02 0.0076 20.9 11.4 107 332-451 3-118 (120)
171 2q5c_A NTRC family transcripti 23.4 1.3E+02 0.0043 26.0 5.7 24 317-340 81-104 (196)
172 1kgs_A DRRD, DNA binding respo 23.3 3.4E+02 0.012 22.9 11.4 108 331-451 3-120 (225)
173 1dbw_A Transcriptional regulat 23.2 2.4E+02 0.0081 21.1 11.3 109 330-451 3-121 (126)
174 3dfz_A SIRC, precorrin-2 dehyd 23.1 3.8E+02 0.013 23.5 10.7 90 317-415 41-131 (223)
175 4b4o_A Epimerase family protei 23.1 44 0.0015 30.7 2.9 20 6-25 13-32 (298)
176 3u3x_A Oxidoreductase; structu 22.8 1.8E+02 0.0063 27.6 7.3 92 301-406 26-119 (361)
177 1ml4_A Aspartate transcarbamoy 22.7 2.3E+02 0.0079 26.4 7.7 136 213-389 98-236 (308)
178 3lte_A Response regulator; str 21.5 2.6E+02 0.009 21.0 10.6 109 330-451 6-125 (132)
179 1f8y_A Nucleoside 2-deoxyribos 21.3 75 0.0026 26.4 3.6 37 371-407 74-114 (157)
180 3a10_A Response regulator; pho 21.0 2.5E+02 0.0085 20.5 9.5 105 332-449 3-115 (116)
181 1t35_A Hypothetical protein YV 20.9 3.9E+02 0.013 22.7 11.0 39 371-411 93-139 (191)
182 3cz5_A Two-component response 20.8 3E+02 0.01 21.4 10.0 110 330-451 5-125 (153)
183 2qv0_A Protein MRKE; structura 20.7 2.9E+02 0.0099 21.1 11.4 110 330-451 9-127 (143)
184 3kux_A Putative oxidoreductase 20.4 4E+02 0.014 24.9 9.2 90 301-406 7-98 (352)
185 1dxh_A Ornithine carbamoyltran 20.4 2.8E+02 0.0097 26.1 7.8 133 210-384 95-233 (335)
186 2lpm_A Two-component response 20.3 3.1E+02 0.011 21.3 7.4 108 330-449 8-120 (123)
187 2rdm_A Response regulator rece 20.2 2.8E+02 0.0095 20.8 12.2 110 330-452 5-124 (132)
188 1u7z_A Coenzyme A biosynthesis 20.2 45 0.0016 29.7 2.1 19 7-25 38-56 (226)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=6.7e-72 Score=587.66 Aligned_cols=506 Identities=69% Similarity=1.157 Sum_probs=415.1
Q ss_pred hhhhHHHHHHHCCCcEEEEeeCCCCcccccCCcEEEEEEeCCeEEEEEEEEEeeCCceEEEEeCccccccccCCCCCccc
Q 010448 5 SSTKLDSFIQANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIY 84 (510)
Q Consensus 5 ~~~~la~~l~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~p~~~~~~~~~~~~~~y 84 (510)
.++.|+++|+++||+|+|++|.|+.+.+.........+.+..+....++++...+||+++++++|.++.+.+++....+|
T Consensus 31 vv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~y~id~~~~~~r~~~~~~~~~Y 110 (536)
T 3vue_A 31 VLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIY 110 (536)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTEEEEEEECTTTTCC----------
T ss_pred HHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCceEEEecChhhhccccccCCCccc
Confidence 47789999999999999999999998887777777788899988899999999999999999999999887777778899
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhhhcCcCCCCCCCCCCCCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEEEe
Q 010448 85 GPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCI 164 (510)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~ti 164 (510)
++..|.+|.|+..||++|++++++.++.++...+.++...+.+|+|+|+|||+++++|.+++..+...+.+.++|+|+|+
T Consensus 111 ~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~Ti 190 (536)
T 3vue_A 111 GPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCI 190 (536)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEE
T ss_pred CCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeee
Confidence 99999999999999999999999998887765555566666677799999999999999999887766666799999999
Q ss_pred cCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhh
Q 010448 165 HNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII 244 (510)
Q Consensus 165 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~ 244 (510)
||+.++|.++...+...+.+........+...+..+.+...+++++.++..||.|+|||+.+++++.+...+|...+...
T Consensus 191 Hnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~ 270 (536)
T 3vue_A 191 HNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIM 270 (536)
T ss_dssp SCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCS
T ss_pred cCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEEEcCHHHhhhhhccccccccccccc
Confidence 99999999988888777777766555444445555556677899999999999999999999999987544555544445
Q ss_pred hcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHH
Q 010448 245 RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIP 324 (510)
Q Consensus 245 ~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~ 324 (510)
+..++.+|+||||++.|+|..+..+..+++.....+.|..++..+++++|++.+++.++|+|+||+.++||++.|++|+.
T Consensus 271 ~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~ 350 (536)
T 3vue_A 271 RLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIP 350 (536)
T ss_dssp CCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHH
T ss_pred ccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHH
Confidence 56689999999999999999998888899888888889999999999999998888999999999999999999999999
Q ss_pred hhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEE
Q 010448 325 HFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV 404 (510)
Q Consensus 325 ~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~ 404 (510)
++.+++.+++|+|.|++.....++.+...+++++.+.+.++.++...+|+.||++|+||++|+||++++|||+||+|||+
T Consensus 351 ~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~ 430 (536)
T 3vue_A 351 ELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCAC 430 (536)
T ss_dssp HHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEE
T ss_pred HhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEE
Confidence 99888999999999998888888999989888899999999999999999999999999999999999999999999999
Q ss_pred ecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhhCHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 010448 405 ASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLN 484 (510)
Q Consensus 405 s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 484 (510)
|++||++|+|.++.||++++....++.++++.|+++|+++|.++++..+.+.+++++++++.++|||++++++|+++|++
T Consensus 431 s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~~~~~~~~am~~~fSW~~~A~~y~~ly~~ 510 (536)
T 3vue_A 431 ASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLG 510 (536)
T ss_dssp CSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHSCCSSHHHHHHHHHHHHT
T ss_pred cCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999988888888889999999999999999986556678889999998999999999999999999
Q ss_pred HHHcCCCCCCCCCCcchhhhhcCCCC
Q 010448 485 LEVAGSEPGIDGEEIAPLAKENVATP 510 (510)
Q Consensus 485 l~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (510)
+......++..+++++|++++++++|
T Consensus 511 L~~~~~~p~~~~~~~aP~~~~~~~~p 536 (536)
T 3vue_A 511 LGVAGSAPGIEGDEIAPLAKENVAAP 536 (536)
T ss_dssp TCC-----------------------
T ss_pred hhhccCCCCCcccccCCCCCCCCCCC
Confidence 87777788889999999999999998
No 2
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=9.1e-47 Score=394.88 Aligned_cols=446 Identities=30% Similarity=0.525 Sum_probs=322.0
Q ss_pred chhhhhHHHHHHHCCCcEEEEeeCCCCcccccCCcEEEEEEeCCeEEEEEEEEEeeCCceEEEEeCccccccccCCCCCc
Q 010448 3 NASSTKLDSFIQANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSK 82 (510)
Q Consensus 3 ~~~~~~la~~l~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~p~~~~~~~~~~~~~ 82 (510)
+..+..|+++|+++||+|+|+|+.++............. ....-.......+...+|+++++++.+.+..+ ..
T Consensus 20 ~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~------~~ 92 (485)
T 2qzs_A 20 ADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVS-RRDTFAGHITLLFGHYNGVGIYLIDAPHLYDR------PG 92 (485)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEE-EECCTTCCEEEEEEEETTEEEEEEECHHHHCC------SS
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEE-EecccCCcEEEEEEEECCcEEEEEeChhhccC------CC
Confidence 456789999999999999999997643221111000000 00000000122333458999999976544421 11
Q ss_pred -ccCCCCCCCCCChHHHHHHHHHHHHHhhhhcCcCCCCCCCCCCCCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEE
Q 010448 83 -IYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVV 161 (510)
Q Consensus 83 -~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V 161 (510)
+|....+.+|.+...++..+...+.++++.+.. +++|| |||+|.+.+.+++.+++... .++|+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~D-ivh~~~~~~~~~~~~~~~~~------~~~p~v 157 (485)
T 2qzs_A 93 SPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDP--------FWRPD-VVHAHDWHAGLAPAYLAARG------RPAKSV 157 (485)
T ss_dssp CSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSST--------TCCCS-EEEEETGGGTTHHHHHHHTT------CSSEEE
T ss_pred CccCCcccCCCCchHHHHHHHHHHHHHHHHHhcc--------CCCCC-EEEeeccchhHHHHHHhhcc------CCCCEE
Confidence 343333445777777887777777777665431 02599 99999988887777665211 589999
Q ss_pred EEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchh
Q 010448 162 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELD 241 (510)
Q Consensus 162 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~ 241 (510)
+|+|+..+.+.++...+...+.+...... . ...+.....+++..++.+|.|+++|+.+++.+.+. .+|.+.+
T Consensus 158 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~-~~~~~~~ 229 (485)
T 2qzs_A 158 FTVHNLAYQGMFYAHHMNDIQLPWSFFNI-----H--GLEFNGQISFLKAGLYYADHITAVSPTYAREITEP-QFAYGME 229 (485)
T ss_dssp EEESCTTCCCEEEGGGGGTTTCCGGGCST-----T--TTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSH-HHHTTCH
T ss_pred EEecCccccCCCCHHHHHhcCCCchhccc-----c--cccccccccHHHHHHHhcCeEEecCHHHHHHHhcc-ccCcchH
Confidence 99998765554433333333333221110 0 00001223567888999999999999999988641 0122111
Q ss_pred hhh--hc--CCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcccccChh
Q 010448 242 NII--RK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSD 317 (510)
Q Consensus 242 ~~~--~~--~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~ 317 (510)
..+ +. .++.+||||+|.+.|.+.....+..+|+.+.+ +.+...+..+++++|++.+++.++|+|+||+.+.||++
T Consensus 230 ~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~ 308 (485)
T 2qzs_A 230 GLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTL-EDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLD 308 (485)
T ss_dssp HHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCG-GGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHH
T ss_pred HHHHhhccCCceEEEecCCCccccCccccccccccccccch-hHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHH
Confidence 111 11 48999999999999988665444455655554 45566678899999998544668999999999999999
Q ss_pred hHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHH
Q 010448 318 ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMR 397 (510)
Q Consensus 318 ~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama 397 (510)
.+++|+..+.+++++|+|+|+|++.+.+.+++++.++++++.++.+++.+.+..+|++||++|+||.+|+||++++|||+
T Consensus 309 ~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma 388 (485)
T 2qzs_A 309 LVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLK 388 (485)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHH
T ss_pred HHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHhCCEEEECCccCCCcHHHHHHHH
Confidence 99999999987899999999998667888999998887778756666888878899999999999999999999999999
Q ss_pred hCCCcEEecCCCccceEEcC---------CceeEeccccccCCCCCccCHHHHHHHHHHHHHhh-CHHHHHHHHHHHhhc
Q 010448 398 YGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQ 467 (510)
Q Consensus 398 ~G~Pvv~s~~gg~~e~v~~~---------~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~-~~~~~~~~~~~~~~~ 467 (510)
||+|||+|+.||+.|++.++ .+|+++ +++|+++++++|.++++.. +++.+.++++++..+
T Consensus 389 ~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 458 (485)
T 2qzs_A 389 YGTLPLVRRTGGLADTVSDCSLENLADGVASGFVF----------EDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAM 458 (485)
T ss_dssp HTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE----------CSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred CCCCEEECCCCCccceeccCccccccccccceEEE----------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999998 899998 8999999999999999421 267788888888889
Q ss_pred cCChHHHHHHHHHHHHHHHHcC
Q 010448 468 DLSWKGPAKKWEETLLNLEVAG 489 (510)
Q Consensus 468 ~fs~~~~~~~~~~~y~~l~~~~ 489 (510)
+|||+.++++|.++|++++.+.
T Consensus 459 ~fs~~~~~~~~~~ly~~~~~~~ 480 (485)
T 2qzs_A 459 DFSWQVAAKSYRELYYRLKLEH 480 (485)
T ss_dssp CCCHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999987653
No 3
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=7.3e-47 Score=395.60 Aligned_cols=444 Identities=32% Similarity=0.523 Sum_probs=323.2
Q ss_pred chhhhhHHHHHHHCCCcEEEEeeCCCCcccccCCcEEE-EEEeCCeEEEEEEEEEeeCCceEEEEeCccccccccCCCCC
Q 010448 3 NASSTKLDSFIQANGHRVMTIAPRYDQYKDAWDTDVVI-ELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQS 81 (510)
Q Consensus 3 ~~~~~~la~~l~~~Gh~V~vi~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~v~~~~~p~~~~~~~~~~~~ 81 (510)
+..+..|+++|+++||+|+|+|+.++............ ....... ......+...+|+++++++.+.+..+ . .
T Consensus 20 ~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gv~v~~~~~~~~~~~----~-~ 93 (485)
T 1rzu_A 20 ADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLG-EKADLLEVQHERLDLLILDAPAYYER----S-G 93 (485)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSS-CCEEEEEEEETTEEEEEEECHHHHCS----S-S
T ss_pred HHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecC-CeEEEEEEEecCceEEEEeChHHhCC----C-c
Confidence 35678999999999999999999865322211000000 0000000 01223334468999999976544321 0 0
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHhhhhc-CcCCCCCCCCCCCCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcE
Q 010448 82 KIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL-NLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKV 160 (510)
Q Consensus 82 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (510)
.+|+...+.+|.+...++..+...+.++++.+ .. ++|| |||+|.+.+++++.+++.... .++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~D-iIh~~~~~~~~~~~~~~~~~~-----~~~p~ 158 (485)
T 1rzu_A 94 GPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPG---------WRPD-MVHAHDWQAAMTPVYMRYAET-----PEIPS 158 (485)
T ss_dssp CSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSS---------CCCS-EEEEEHHHHTTHHHHHHHSSS-----CCCCE
T ss_pred cccCCcccccccchHHHHHHHHHHHHHHHHHhccC---------CCCC-EEEecccchhHHHHHHhhccc-----CCCCE
Confidence 14443334557777788888877777776654 21 3699 999999888777777665311 48999
Q ss_pred EEEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCch
Q 010448 161 VFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVEL 240 (510)
Q Consensus 161 V~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~ 240 (510)
|+|+|+..+.+.++...+...+++...... .. ..+.....+++..++.+|.|+++|+.+++.+.+. .+|...
T Consensus 159 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~-~~g~~~ 230 (485)
T 1rzu_A 159 LLTIHNIAFQGQFGANIFSKLALPAHAFGM-----EG--IEYYNDVSFLKGGLQTATALSTVSPSYAEEILTA-EFGMGL 230 (485)
T ss_dssp EEEESCTTCCCEECGGGGGGSCCCGGGSST-----TT--TEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSH-HHHTTC
T ss_pred EEEecCccccCCCCHHHHhhcCCChhhccc-----cc--ccccccccHHHHHHhhcCEEEecCHhHHHHHhcc-ccCcch
Confidence 999998876555554333333333322110 00 0001123567888999999999999999988641 012100
Q ss_pred hhh--hhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcccccChhh
Q 010448 241 DNI--IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDI 318 (510)
Q Consensus 241 ~~~--~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~ 318 (510)
+.. .+..++.+||||+|.+.|.+.....+..+|..+++ +.+...+..+++++|++.+ +.++|+|+||+.+.||++.
T Consensus 231 ~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~-~~~~i~~vGrl~~~Kg~~~ 308 (485)
T 1rzu_A 231 EGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANL-KNRALNKKAVAEHFRIDDD-GSPLFCVISRLTWQKGIDL 308 (485)
T ss_dssp HHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBC-TTHHHHHHHHHHHHTCCCS-SSCEEEEESCBSTTTTHHH
T ss_pred HHHHHhhcCCceEEcCCCcccccCCcccccccccccccch-hhHHHhHHHHHHhcCCCCC-CCeEEEEEccCccccCHHH
Confidence 000 11238999999999999987655444444544443 4556667889999999843 2469999999999999999
Q ss_pred HHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHh
Q 010448 319 LAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRY 398 (510)
Q Consensus 319 li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~ 398 (510)
+++|+.++.+++++|+|+|+|++.+.+.+++++.+++++|.++.+++.+.+..+|++||++|+||.+|+||++++|||+|
T Consensus 309 li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~ 388 (485)
T 1rzu_A 309 MAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRY 388 (485)
T ss_dssp HHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhcCCEEEECcccCCCCHHHHHHHHC
Confidence 99999999878999999999987678889999988877787666678888788999999999999999999999999999
Q ss_pred CCCcEEecCCCccceEEcC---------CceeEeccccccCCCCCccCHHHHHHHHHHHH---HhhCHHHHHHHHHHHhh
Q 010448 399 GTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL---ATYGTQALAEMMKNGMA 466 (510)
Q Consensus 399 G~Pvv~s~~gg~~e~v~~~---------~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll---~~~~~~~~~~~~~~~~~ 466 (510)
|+|||+|+.||+.|++.++ .+|+++ +++|+++|+++|.+++ ++ ++.+.++++++..
T Consensus 389 G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~ll~~~~~--~~~~~~~~~~~~~ 456 (485)
T 1rzu_A 389 GCIPVVARTGGLADTVIDANHAALASKAATGVQF----------SPVTLDGLKQAIRRTVRYYHD--PKLWTQMQKLGMK 456 (485)
T ss_dssp TCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE----------SSCSHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHT
T ss_pred CCCEEEeCCCChhheecccccccccccCCcceEe----------CCCCHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 9999999999999999998 899998 8999999999999999 45 7778888888888
Q ss_pred ccCChHHHHHHHHHHHHHHHHcC
Q 010448 467 QDLSWKGPAKKWEETLLNLEVAG 489 (510)
Q Consensus 467 ~~fs~~~~~~~~~~~y~~l~~~~ 489 (510)
++|||+.++++|.++|++++++.
T Consensus 457 ~~fs~~~~~~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 457 SDVSWEKSAGLYAALYSQLISKG 479 (485)
T ss_dssp CCCBHHHHHHHHHHHHHHHTC--
T ss_pred HhCChHHHHHHHHHHHHHhhCCC
Confidence 89999999999999999998663
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=8.1e-45 Score=374.29 Aligned_cols=403 Identities=23% Similarity=0.298 Sum_probs=303.4
Q ss_pred hhhhhHHHHHHHCCCcEEEEeeCCCCcccccCCcEEEEEEeCCeEEEEEEEEEeeCCceEEEEeCccccccccCCCCCcc
Q 010448 4 ASSTKLDSFIQANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKI 83 (510)
Q Consensus 4 ~~~~~la~~l~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~p~~~~~~~~~~~~~~ 83 (510)
..+..||++|+++||+|+|+||.++...... ...+.+ -++...........+|+++++++. .+..+ ..+
T Consensus 22 ~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~gv~v~~~~~-~~~~~------~~~ 90 (439)
T 3fro_A 22 EALTAISEALASLGHEVLVFTPSHGRFQGEE--IGKIRV--FGEEVQVKVSYEERGNLRIYRIGG-GLLDS------EDV 90 (439)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCSCCEE--EEEEEE--TTEEEEEEEEEEEETTEEEEEEES-GGGGC------SST
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCchhhh--hccccc--cCcccceeeeeccCCCceEEEecc-hhccc------ccc
Confidence 4678999999999999999999877554332 111122 234445566666889999999977 33321 233
Q ss_pred cCCCCCCCCCCh-HHHHHHHHHHHHHhhhhcCcCCCCCCCCCCCCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEE
Q 010448 84 YGPRTGEDYQDN-QLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 162 (510)
Q Consensus 84 y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~ 162 (510)
|.. +.+. ..++..+...+...++.+-. ..++|| |||+|++...+++.++++. .++|+|+
T Consensus 91 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D-ii~~~~~~~~~~~~~~~~~-------~~~~~v~ 150 (439)
T 3fro_A 91 YGP-----GWDGLIRKAVTFGRASVLLLNDLLR-------EEPLPD-VVHFHDWHTVFAGALIKKY-------FKIPAVF 150 (439)
T ss_dssp TCS-----HHHHHHHHHHHHHHHHHHHHHHHTT-------TSCCCS-EEEEESGGGHHHHHHHHHH-------HCCCEEE
T ss_pred ccC-----CcchhhhhhHHHHHHHHHHHHHHhc-------cCCCCe-EEEecchhhhhhHHHHhhc-------cCCCEEE
Confidence 321 3334 56666777777777766510 013599 9999999888888877754 4899999
Q ss_pred EecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhh
Q 010448 163 CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDN 242 (510)
Q Consensus 163 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~ 242 (510)
++|+....+. +...+....+.. ........+++..++.||.|+++|+.+++..... ++.+
T Consensus 151 ~~h~~~~~~~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~--~~~~--- 210 (439)
T 3fro_A 151 TIHRLNKSKL-PAFYFHEAGLSE--------------LAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGF--FRNF--- 210 (439)
T ss_dssp EESCCCCCCE-EHHHHHHTTCGG--------------GCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHH--HGGG---
T ss_pred EecccccccC-chHHhCcccccc--------------ccccceeeHhhhhhhhccEEEecCHHHHHHHhhh--hhhc---
Confidence 9997654221 111110000000 0011233667889999999999999998874321 1122
Q ss_pred hhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcc-cccChhhHHH
Q 010448 243 IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE-EQKGSDILAA 321 (510)
Q Consensus 243 ~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~-~~Kg~~~li~ 321 (510)
..++.+||||+|.+.|.|... ...+...+..+++++|++ ++ ++|+|+||+. +.||++.+++
T Consensus 211 ---~~~i~vi~ngvd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~-~~i~~~G~~~~~~Kg~~~li~ 272 (439)
T 3fro_A 211 ---EGKITYVFNGIDCSFWNESYL------------TGSRDERKKSLLSKFGMD--EG-VTFMFIGRFDRGQKGVDVLLK 272 (439)
T ss_dssp ---TTSEEECCCCCCTTTSCGGGS------------CSCHHHHHHHHHHHHTCC--SC-EEEEEECCSSCTTBCHHHHHH
T ss_pred ---CCceeecCCCCCchhcCcccc------------cchhhhhHHHHHHHcCCC--CC-cEEEEEcccccccccHHHHHH
Confidence 348999999999998876421 123455678899999996 33 8999999999 9999999999
Q ss_pred HHHhhhh----CCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHH
Q 010448 322 AIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMR 397 (510)
Q Consensus 322 a~~~l~~----~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama 397 (510)
|++++.+ ++++|+|+|+|+..+.+.+++++.++++.+.+.+.++.+++..+|++||++|+||.+|+||++++|||+
T Consensus 273 a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma 352 (439)
T 3fro_A 273 AIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMC 352 (439)
T ss_dssp HHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHH
T ss_pred HHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHH
Confidence 9999987 689999999999777799999999988545555558999999999999999999999999999999999
Q ss_pred hCCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH-hhCHHHHHHHHHHHh--hccCChHHH
Q 010448 398 YGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA-TYGTQALAEMMKNGM--AQDLSWKGP 474 (510)
Q Consensus 398 ~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~--~~~fs~~~~ 474 (510)
||+|||+|+.||..|++.++ +|+++ +++|+++++++|.++++ + ++.+.++++++. .++|||+.+
T Consensus 353 ~G~Pvi~s~~~~~~e~~~~~-~g~~~----------~~~d~~~la~~i~~ll~~~--~~~~~~~~~~~~~~~~~~s~~~~ 419 (439)
T 3fro_A 353 LGAIPIASAVGGLRDIITNE-TGILV----------KAGDPGELANAILKALELS--RSDLSKFRENCKKRAMSFSWEKS 419 (439)
T ss_dssp TTCEEEEESSTHHHHHCCTT-TCEEE----------CTTCHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHTSCHHHH
T ss_pred CCCCeEEcCCCCcceeEEcC-ceEEe----------CCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhhCcHHHH
Confidence 99999999999999999887 99998 89999999999999999 6 344444444442 277999999
Q ss_pred HHHHHHHHHHHHHc
Q 010448 475 AKKWEETLLNLEVA 488 (510)
Q Consensus 475 ~~~~~~~y~~l~~~ 488 (510)
+++|.++|++++++
T Consensus 420 ~~~~~~~~~~~~~~ 433 (439)
T 3fro_A 420 AERYVKAYTGSIDR 433 (439)
T ss_dssp HHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.8e-39 Score=334.86 Aligned_cols=371 Identities=17% Similarity=0.214 Sum_probs=267.3
Q ss_pred hhhhhHHHHHHHCCCcEEEEeeCCCCcccccCCcEEEEEEeCCeEEEEEEEEEeeCCceEEEEeCccccccccCCCCCcc
Q 010448 4 ASSTKLDSFIQANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKI 83 (510)
Q Consensus 4 ~~~~~la~~l~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~p~~~~~~~~~~~~~~ 83 (510)
..+..|+++|+++||+|+|+|+........ .....+|++++.++...+...
T Consensus 46 ~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--------------------~~~~~~~v~v~~~~~~~~~~~--------- 96 (438)
T 3c48_A 46 VYILSTATELAKQGIEVDIYTRATRPSQGE--------------------IVRVAENLRVINIAAGPYEGL--------- 96 (438)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCGGGCS--------------------EEEEETTEEEEEECCSCSSSC---------
T ss_pred HHHHHHHHHHHhcCCEEEEEecCCCCCCcc--------------------cccccCCeEEEEecCCCcccc---------
Confidence 457899999999999999999874321110 112246888888854332210
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHh-hhhcCcCCCCCCCCCCCCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEE
Q 010448 84 YGPRTGEDYQDNQLRFSLLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 162 (510)
Q Consensus 84 y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~ 162 (510)
. ..+....+..+...++.. ++... +|| |||+|.+...+++.++.+. .++|+|+
T Consensus 97 -~------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~D-iv~~~~~~~~~~~~~~~~~-------~~~p~v~ 150 (438)
T 3c48_A 97 -S------KEELPTQLAAFTGGMLSFTRREKV-----------TYD-LIHSHYWLSGQVGWLLRDL-------WRIPLIH 150 (438)
T ss_dssp -C------GGGGGGGHHHHHHHHHHHHHHHTC-----------CCS-EEEEEHHHHHHHHHHHHHH-------HTCCEEE
T ss_pred -c------hhHHHHHHHHHHHHHHHHHHhccC-----------CCC-EEEeCCccHHHHHHHHHHH-------cCCCEEE
Confidence 0 000011122233333333 33221 389 9999987766666555544 3899999
Q ss_pred EecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhh
Q 010448 163 CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDN 242 (510)
Q Consensus 163 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~ 242 (510)
++|+........ +........ .....+.+..++.+|.|+++|+..++.+.+. +|++.+
T Consensus 151 ~~h~~~~~~~~~---~~~~~~~~~----------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~--~g~~~~- 208 (438)
T 3c48_A 151 TAHTLAAVKNSY---RDDSDTPES----------------EARRICEQQLVDNADVLAVNTQEEMQDLMHH--YDADPD- 208 (438)
T ss_dssp ECSSCHHHHSCC-------CCHHH----------------HHHHHHHHHHHHHCSEEEESSHHHHHHHHHH--HCCCGG-
T ss_pred EecCCccccccc---ccccCCcch----------------HHHHHHHHHHHhcCCEEEEcCHHHHHHHHHH--hCCChh-
Confidence 999653211000 000000000 0011234677889999999999999998752 455544
Q ss_pred hhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcccccChhhHHHH
Q 010448 243 IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAA 322 (510)
Q Consensus 243 ~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a 322 (510)
++.+||||+|.+.|.+... .....+++++|++. +.++|+|+||+.+.||++.+++|
T Consensus 209 -----k~~vi~ngvd~~~~~~~~~-----------------~~~~~~r~~~~~~~--~~~~i~~~G~~~~~Kg~~~li~a 264 (438)
T 3c48_A 209 -----RISVVSPGADVELYSPGND-----------------RATERSRRELGIPL--HTKVVAFVGRLQPFKGPQVLIKA 264 (438)
T ss_dssp -----GEEECCCCCCTTTSCCC---------------------CHHHHHHTTCCS--SSEEEEEESCBSGGGCHHHHHHH
T ss_pred -----heEEecCCccccccCCccc-----------------chhhhhHHhcCCCC--CCcEEEEEeeecccCCHHHHHHH
Confidence 8999999999988876431 01234788888863 55899999999999999999999
Q ss_pred HHhhhh--C--CcEEEEEec----CChhHHHHHHHHHHHCC--CceEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHH
Q 010448 323 IPHFIK--E--NVQIIVLGT----GKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQ 392 (510)
Q Consensus 323 ~~~l~~--~--~~~l~i~G~----g~~~~~~~~~~l~~~~~--~~v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~ 392 (510)
+..+.+ + +++|+|+|+ |+ ..+.+++++.+++ ++|.+.+..+.+++..+|+.||++|+||..|+||+++
T Consensus 265 ~~~l~~~~p~~~~~l~i~G~~~~~g~--~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~ 342 (438)
T 3c48_A 265 VAALFDRDPDRNLRVIICGGPSGPNA--TPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVA 342 (438)
T ss_dssp HHHHHHHCTTCSEEEEEECCBC--------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHH
T ss_pred HHHHHhhCCCcceEEEEEeCCCCCCc--HHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHH
Confidence 999975 2 799999998 54 5566777777654 4799999899888889999999999999999999999
Q ss_pred HHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhhCHHHHHHHHHHH---hhccC
Q 010448 393 LHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG---MAQDL 469 (510)
Q Consensus 393 ~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~---~~~~f 469 (510)
+|||+||+|||+++.||..|++.++.+|+++ ++.|+++++++|.+++++ ++.+.++++++ +.+ |
T Consensus 343 ~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~d~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~-~ 409 (438)
T 3c48_A 343 MEAQASGTPVIAARVGGLPIAVAEGETGLLV----------DGHSPHAWADALATLLDD--DETRIRMGEDAVEHART-F 409 (438)
T ss_dssp HHHHHTTCCEEEESCTTHHHHSCBTTTEEEE----------SSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHcCCCEEecCCCChhHHhhCCCcEEEC----------CCCCHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHh-C
Confidence 9999999999999999999999999999998 889999999999999998 66666665554 445 9
Q ss_pred ChHHHHHHHHHHHHHHHHcCC
Q 010448 470 SWKGPAKKWEETLLNLEVAGS 490 (510)
Q Consensus 470 s~~~~~~~~~~~y~~l~~~~~ 490 (510)
||+.++++|.++|++++++..
T Consensus 410 s~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3c48_A 410 SWAATAAQLSSLYNDAIANEN 430 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999998743
No 6
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.8e-39 Score=330.32 Aligned_cols=353 Identities=17% Similarity=0.193 Sum_probs=253.7
Q ss_pred chhhhhHHHHHHHCCCcEEEEeeCCCCcccccCCcEEEEEEeCCeEEEEEEEEEeeCCceEEEEeCccccccccCCCCCc
Q 010448 3 NASSTKLDSFIQANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSK 82 (510)
Q Consensus 3 ~~~~~~la~~l~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~p~~~~~~~~~~~~~ 82 (510)
+..+..|+++|+++||+|+|+++..+.... ...+|+.+..++.+.+..
T Consensus 30 ~~~~~~la~~L~~~G~~V~v~~~~~~~~~~-----------------------~~~~~i~~~~~~~~~~~~--------- 77 (394)
T 2jjm_A 30 GVVGTELGKQLAERGHEIHFITSGLPFRLN-----------------------KVYPNIYFHEVTVNQYSV--------- 77 (394)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSCC---------------------------CCCTTEEEECCCCC-------------
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCCCccc-----------------------ccCCceEEEecccccccc---------
Confidence 346778999999999999999986321100 112455555443322110
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHhhhhcCcCCCCCCCCCCCCCeEEEeccchhh-hHHHHHHHhhcCCCCCCCCcEE
Q 010448 83 IYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS-LIPCYLKTMYKPKGMYKSAKVV 161 (510)
Q Consensus 83 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~iih~h~~~~~-~~~~~l~~~~~~~~~~~~~~~V 161 (510)
+. +.. ..+ .+...+.+.++.. +|| |||+|...+. +.+.+.+.... .++|+|
T Consensus 78 -~~------~~~--~~~-~~~~~l~~~l~~~------------~~D-vv~~~~~~~~~~~~~~~~~~~~-----~~~p~v 129 (394)
T 2jjm_A 78 -FQ------YPP--YDL-ALASKMAEVAQRE------------NLD-ILHVHYAIPHAICAYLAKQMIG-----ERIKIV 129 (394)
T ss_dssp -CC------SCC--HHH-HHHHHHHHHHHHH------------TCS-EEEECSSTTHHHHHHHHHHHTT-----TCSEEE
T ss_pred -cc------ccc--ccH-HHHHHHHHHHHHc------------CCC-EEEEcchhHHHHHHHHHHHhhc-----CCCCEE
Confidence 00 011 111 1233344444443 499 9999965543 33333333321 269999
Q ss_pred EEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchh
Q 010448 162 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELD 241 (510)
Q Consensus 162 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~ 241 (510)
+++|+.... ..+. ......+++..++.+|.++++|+.+++.+.+. ++.
T Consensus 130 ~~~h~~~~~---------~~~~------------------~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~--~~~--- 177 (394)
T 2jjm_A 130 TTLHGTDIT---------VLGS------------------DPSLNNLIRFGIEQSDVVTAVSHSLINETHEL--VKP--- 177 (394)
T ss_dssp EECCHHHHH---------TTTT------------------CTTTHHHHHHHHHHSSEEEESCHHHHHHHHHH--TCC---
T ss_pred EEEecCccc---------ccCC------------------CHHHHHHHHHHHhhCCEEEECCHHHHHHHHHh--hCC---
Confidence 999953210 0000 00122456778899999999999999998863 222
Q ss_pred hhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcccccChhhHHH
Q 010448 242 NIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAA 321 (510)
Q Consensus 242 ~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~ 321 (510)
..++.+||||+|.+.|.+.. ...++++++++. +.++|+|+|++.+.||++.+++
T Consensus 178 ----~~~~~vi~ngv~~~~~~~~~--------------------~~~~~~~~~~~~--~~~~i~~~G~~~~~Kg~~~li~ 231 (394)
T 2jjm_A 178 ----NKDIQTVYNFIDERVYFKRD--------------------MTQLKKEYGISE--SEKILIHISNFRKVKRVQDVVQ 231 (394)
T ss_dssp ----SSCEEECCCCCCTTTCCCCC--------------------CHHHHHHTTCC-----CEEEEECCCCGGGTHHHHHH
T ss_pred ----cccEEEecCCccHHhcCCcc--------------------hHHHHHHcCCCC--CCeEEEEeeccccccCHHHHHH
Confidence 12899999999998887643 345677888853 4589999999999999999999
Q ss_pred HHHhhhh-CCcEEEEEecCChhHHHHHHHHHHHCC--CceEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHh
Q 010448 322 AIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRY 398 (510)
Q Consensus 322 a~~~l~~-~~~~l~i~G~g~~~~~~~~~~l~~~~~--~~v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~ 398 (510)
|+..+.+ .+++|+|+|+|+ ..+.+++++.+++ ++|.+.+. .+++..+|+.||++++||..|++|++++|||+|
T Consensus 232 a~~~l~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~ 307 (394)
T 2jjm_A 232 AFAKIVTEVDAKLLLVGDGP--EFCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMSDLMLLLSEKESFGLVLLEAMAC 307 (394)
T ss_dssp HHHHHHHSSCCEEEEECCCT--THHHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHT
T ss_pred HHHHHHhhCCCEEEEECCch--HHHHHHHHHHHcCCCCeEEEeCc--hhhHHHHHHhCCEEEeccccCCCchHHHHHHhc
Confidence 9999976 479999999987 4566777776654 36776664 344567999999999999999999999999999
Q ss_pred CCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhhCHHHHHHHHHHH---hhccCChHHHH
Q 010448 399 GTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKGPA 475 (510)
Q Consensus 399 G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~~ 475 (510)
|+|||+++.||..|++.++.+|+++ +++|+++++++|.+++++ ++.+.++++++ +.++|||+.++
T Consensus 308 G~PvI~~~~~~~~e~v~~~~~g~~~----------~~~d~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~~~s~~~~~ 375 (394)
T 2jjm_A 308 GVPCIGTRVGGIPEVIQHGDTGYLC----------EVGDTTGVADQAIQLLKD--EELHRNMGERARESVYEQFRSEKIV 375 (394)
T ss_dssp TCCEEEECCTTSTTTCCBTTTEEEE----------CTTCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCEEEecCCChHHHhhcCCceEEe----------CCCCHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999998 899999999999999998 66666666555 45889999999
Q ss_pred HHHHHHHHHHHHcC
Q 010448 476 KKWEETLLNLEVAG 489 (510)
Q Consensus 476 ~~~~~~y~~l~~~~ 489 (510)
++|.++|++++++.
T Consensus 376 ~~~~~~~~~~~~~~ 389 (394)
T 2jjm_A 376 SQYETIYYDVLRDD 389 (394)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998653
No 7
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=7.8e-39 Score=335.98 Aligned_cols=390 Identities=15% Similarity=0.141 Sum_probs=271.4
Q ss_pred hhhhhHHHHHHHCCCcEEEEeeCCCCcc-cccCCcEEEEEEeCCeEEEEEEEEEe--eCCceEEEEeCccccccccCCCC
Q 010448 4 ASSTKLDSFIQANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVRFFHCH--KRGVDRVFVDHPWFLAKVWGKTQ 80 (510)
Q Consensus 4 ~~~~~la~~l~~~Gh~V~vi~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~gv~v~~~~~p~~~~~~~~~~~ 80 (510)
..+..|+++|+++||+|+|+|+...... ..+... .... .+|++++.++.+..... . .
T Consensus 37 ~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~----------------~~~~~~~~gv~v~~~~~~~~~~~--~--~ 96 (499)
T 2r60_A 37 VYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGE----------------IDYYQETNKVRIVRIPFGGDKFL--P--K 96 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCS----------------EEECTTCSSEEEEEECCSCSSCC--C--G
T ss_pred ehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhh----------------HHhccCCCCeEEEEecCCCcCCc--C--H
Confidence 4578899999999999999998643211 110000 0111 36888888854321100 0 0
Q ss_pred CcccCCCCCCCCCChHHHHHHHHHHHHHhhhhcCcCCCCCCCCCCCCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcE
Q 010448 81 SKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKV 160 (510)
Q Consensus 81 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (510)
..++ ..+..+...+.+.+++... +|| |||+|.+...+++.++.+. .++|+
T Consensus 97 ~~~~------------~~~~~~~~~l~~~l~~~~~----------~~D-ivh~~~~~~~~~~~~~~~~-------~~~p~ 146 (499)
T 2r60_A 97 EELW------------PYLHEYVNKIINFYREEGK----------FPQ-VVTTHYGDGGLAGVLLKNI-------KGLPF 146 (499)
T ss_dssp GGCG------------GGHHHHHHHHHHHHHHHTC----------CCS-EEEEEHHHHHHHHHHHHHH-------HCCCE
T ss_pred HHHH------------HHHHHHHHHHHHHHHhcCC----------CCC-EEEEcCCcchHHHHHHHHh-------cCCcE
Confidence 0000 1112233344444544211 499 9999987766666655554 38999
Q ss_pred EEEecCCCcccccCccchhhcCCC-hhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCC-C
Q 010448 161 VFCIHNIAYQGRFAFEDFGLLNLP-AQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKG-V 238 (510)
Q Consensus 161 V~tiH~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g-~ 238 (510)
|+|+|+........ +...+.. ..+...+. +.....+.+..++.||.|+++|+..++.+.+...+| +
T Consensus 147 v~~~H~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~ 214 (499)
T 2r60_A 147 TFTGHSLGAQKMEK---LNVNTSNFKEMDERFK---------FHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGA 214 (499)
T ss_dssp EEECSSCHHHHHHT---TCCCSTTSHHHHHHHC---------HHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTT
T ss_pred EEEccCcccccchh---hccCCCCcchhhhhHH---------HHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhccccc
Confidence 99999753211000 0000000 00000000 000112346788999999999999999887520024 3
Q ss_pred ----chhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhC-----CCCCCCCcEEEEecC
Q 010448 239 ----ELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG-----LPVDRNIPVIGFIGR 309 (510)
Q Consensus 239 ----~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~i~~~Gr 309 (510)
+.+ ++.+||||+|.+.|.+... ...+..+++++| ++ .+.++|+|+||
T Consensus 215 ~~~~~~~------ki~vi~ngvd~~~~~~~~~----------------~~~~~~~r~~~~~~~~~~~--~~~~~i~~vGr 270 (499)
T 2r60_A 215 VNVEDDD------KFSVIPPGVNTRVFDGEYG----------------DKIKAKITKYLERDLGSER--MELPAIIASSR 270 (499)
T ss_dssp CCTTCGG------GEEECCCCBCTTTSSSCCC----------------HHHHHHHHHHHHHHSCGGG--TTSCEEEECSC
T ss_pred ccccCCC------CeEEECCCcChhhcCccch----------------hhhHHHHHHHhcccccccC--CCCcEEEEeec
Confidence 333 8999999999988876431 122466778887 65 34589999999
Q ss_pred cccccChhhHHHHHHhhhh--C-CcEEEEEec--CC--------h---hHHHHHHHHHHHCC--CceEEeccCCHHHHHH
Q 010448 310 LEEQKGSDILAAAIPHFIK--E-NVQIIVLGT--GK--------K---PMEKQLEQLEILYP--EKARGVAKFNIPLAHM 371 (510)
Q Consensus 310 l~~~Kg~~~li~a~~~l~~--~-~~~l~i~G~--g~--------~---~~~~~~~~l~~~~~--~~v~~~~~~~~~~~~~ 371 (510)
+.+.||++.+++|+..+.+ + .++++|+|+ |+ . .+.+.+++++.+++ ++|.+.+.++.+++..
T Consensus 271 l~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~ 350 (499)
T 2r60_A 271 LDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAG 350 (499)
T ss_dssp CCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHH
Confidence 9999999999999999975 2 468999998 32 1 12677888887664 4699999998888999
Q ss_pred HHHhC----cEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHH
Q 010448 372 IIAGA----DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 447 (510)
Q Consensus 372 ~~~~a----dv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ 447 (510)
+|++| |++|+||.+|+||++++|||+||+|||+|+.||+.|++.++.+|+++ +++|+++++++|.+
T Consensus 351 ~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~----------~~~d~~~la~~i~~ 420 (499)
T 2r60_A 351 CYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLV----------DPEDPEDIARGLLK 420 (499)
T ss_dssp HHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEE----------CTTCHHHHHHHHHH
T ss_pred HHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEe----------CCCCHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHhhCHHHHHHHHHHH---hhccCChHHHHHHHHHHHHHHHHcCCC
Q 010448 448 ALATYGTQALAEMMKNG---MAQDLSWKGPAKKWEETLLNLEVAGSE 491 (510)
Q Consensus 448 ll~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y~~l~~~~~~ 491 (510)
++++ ++.+.++++++ +.++|||+.++++|.++|++++++...
T Consensus 421 ll~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~~ 465 (499)
T 2r60_A 421 AFES--EETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKDE 465 (499)
T ss_dssp HHSC--HHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC---
T ss_pred HHhC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Confidence 9997 66666666554 456799999999999999999987443
No 8
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=2.2e-39 Score=351.26 Aligned_cols=400 Identities=14% Similarity=0.150 Sum_probs=262.9
Q ss_pred hhHHHHHHHCCCcEE----EEeeCCCCcc-cccCCcEEEEEEeCCeEEEEEEEEEeeCCceEEEEeCcccc---ccccCC
Q 010448 7 TKLDSFIQANGHRVM----TIAPRYDQYK-DAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFL---AKVWGK 78 (510)
Q Consensus 7 ~~la~~l~~~Gh~V~----vi~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~p~~~---~~~~~~ 78 (510)
.+||++|+++||+|+ |+|...+.-. +..... .+ .....+|++|++++..+.. .++..
T Consensus 317 ~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~----------~e----~i~~~~gv~I~RvP~~~~~g~l~~~l~- 381 (816)
T 3s28_A 317 IEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGER----------LE----RVYDSEYCDILRVPFRTEKGIVRKWIS- 381 (816)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSS----------EE----ECTTCSSEEEEEECEEETTEEECSCCC-
T ss_pred HHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCc----------ce----eecCcCCeEEEEecCCCcccccccccc-
Confidence 368889999999887 9987644221 110000 00 0011358999998543211 11000
Q ss_pred CCCcccCCCCCCCCCChHHHHHHHH-HHHHHhhhhcCcCCCCCCCCCCCCCeEEEeccchhhhHHHHHHHhhcCCCCCCC
Q 010448 79 TQSKIYGPRTGEDYQDNQLRFSLLC-QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKS 157 (510)
Q Consensus 79 ~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~ 157 (510)
+..++. .+..|. ..+..+++.... +|| |||+|.|.+++++.++++.. +
T Consensus 382 -k~~L~~------------~L~~F~~~~l~~il~~~~~----------~PD-VIHsH~~~sglva~llar~~-------g 430 (816)
T 3s28_A 382 -RFEVWP------------YLETYTEDAAVELSKELNG----------KPD-LIIGNYSDGNLVASLLAHKL-------G 430 (816)
T ss_dssp -TTTCGG------------GHHHHHHHHHHHHHHHCSS----------CCS-EEEEEHHHHHHHHHHHHHHH-------T
T ss_pred -HHHHHH------------HHHHHHHHHHHHHHHhcCC----------CCe-EEEeCCchHHHHHHHHHHHc-------C
Confidence 122221 223333 333344444332 499 99999999888888777663 8
Q ss_pred CcEEEEecCCCcccccCccchhhcCCCh-hhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCC-C
Q 010448 158 AKVVFCIHNIAYQGRFAFEDFGLLNLPA-QFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-D 235 (510)
Q Consensus 158 ~~~V~tiH~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~-~ 235 (510)
+|+|+|.|++...... .. +... .+...+.+ ...+...+.+++.||.|+|+|+..++.+.+.. .
T Consensus 431 vP~V~T~Hsl~~~k~~-~~-----~~~~~~~~~~y~~---------~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~ 495 (816)
T 3s28_A 431 VTQCTIAHALEKTKYP-DS-----DIYWKKLDDKYHF---------SCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQ 495 (816)
T ss_dssp CCEEEECSCCHHHHST-TT-----TTTHHHHHHHHCH---------HHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCT
T ss_pred CCEEEEEecccccccc-cc-----cchhhhHHHHHHH---------HHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHH
Confidence 9999999976432111 00 0000 00000000 00111245589999999999999998643311 0
Q ss_pred CCCch----hh--------hhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHH------HHHHHHHhCCCC
Q 010448 236 KGVEL----DN--------IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL------KEALQAEVGLPV 297 (510)
Q Consensus 236 ~g~~~----~~--------~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~ 297 (510)
++... .. -....++.+||||+|.+.|.|..... ..+....... ....++.+|+..
T Consensus 496 y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~-------~Rl~~~~~~i~~~l~~p~~~r~~lg~l~ 568 (816)
T 3s28_A 496 YESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEK-------RRLTKFHSEIEELLYSDVENKEHLCVLK 568 (816)
T ss_dssp TGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTT-------TCCGGGHHHHHHHHHCSCCBTTEESCBS
T ss_pred hhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhh-------hhhhhccccccccccchhhHHHHhcccC
Confidence 11100 00 00012899999999999998764310 0000000000 011234456644
Q ss_pred CCCCcEEEEecCcccccChhhHHHHHHhhhh--CCcEEEEEecCCh---------hHHHHHHHHHHHCC--CceEEeccC
Q 010448 298 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK---------PMEKQLEQLEILYP--EKARGVAKF 364 (510)
Q Consensus 298 ~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~~~~l~i~G~g~~---------~~~~~~~~l~~~~~--~~v~~~~~~ 364 (510)
++++++|+|+||+.+.||++.+++|+.++.+ ++++|+|+|+|++ ...+.+++++.+++ ++|.+.+..
T Consensus 569 ~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~ 648 (816)
T 3s28_A 569 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQ 648 (816)
T ss_dssp CTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCC
T ss_pred CCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCc
Confidence 4577999999999999999999999999976 5899999999872 24566777777765 478888744
Q ss_pred C----HHHHHHHHH-hCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHH
Q 010448 365 N----IPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVA 439 (510)
Q Consensus 365 ~----~~~~~~~~~-~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~ 439 (510)
+ .+++..+|+ ++|++|+||.+|+||++++||||||+|||+|+.||+.|++.++.+|+++ ++.|++
T Consensus 649 ~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv----------~p~D~e 718 (816)
T 3s28_A 649 MDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHI----------DPYHGD 718 (816)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEE----------CTTSHH
T ss_pred cccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEe----------CCCCHH
Confidence 3 355556777 6899999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHH----HhhCHHHHHHHHHHH---hhccCChHHHHHHHHHHHHHHH
Q 010448 440 AVSTTVRRAL----ATYGTQALAEMMKNG---MAQDLSWKGPAKKWEETLLNLE 486 (510)
Q Consensus 440 ~la~~i~~ll----~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y~~l~ 486 (510)
+++++|.+++ ++ ++.+.++++++ +.++|||+.++++|.++|+.+-
T Consensus 719 ~LA~aI~~lL~~Ll~d--~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 719 QAADTLADFFTKCKED--PSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp HHHHHHHHHHHHHHHC--THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 9999998777 66 55666666665 4589999999999999998763
No 9
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=2.2e-38 Score=321.61 Aligned_cols=345 Identities=21% Similarity=0.252 Sum_probs=261.2
Q ss_pred hhhhhHHHHHHHCCCcEEEEeeCCCCcc-cccCCcEEEEEEeCCeEEEEEEEEEeeCCceEEEEeCccccccccCCCCCc
Q 010448 4 ASSTKLDSFIQANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSK 82 (510)
Q Consensus 4 ~~~~~la~~l~~~Gh~V~vi~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~p~~~~~~~~~~~~~ 82 (510)
..+..|+++| +||+|+|+++..+... ... ....|++++.++......
T Consensus 23 ~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--------- 70 (394)
T 3okp_A 23 SYLRDFIATQ--DPESIVVFASTQNAEEAHAY---------------------DKTLDYEVIRWPRSVMLP--------- 70 (394)
T ss_dssp HHHHHHHTTS--CGGGEEEEEECSSHHHHHHH---------------------HTTCSSEEEEESSSSCCS---------
T ss_pred HHHHHHHHHh--cCCeEEEEECCCCccchhhh---------------------ccccceEEEEcccccccc---------
Confidence 4567788888 6999999998754221 110 012477777774322111
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHhhhhcCcCCCCCCCCCCCCCeEEEeccchhh-hHHHHHHHhhcCCCCCCCCc-E
Q 010448 83 IYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS-LIPCYLKTMYKPKGMYKSAK-V 160 (510)
Q Consensus 83 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~iih~h~~~~~-~~~~~l~~~~~~~~~~~~~~-~ 160 (510)
. ..+...+.+.+++. +|| +||+|..... ++..+++. .++| +
T Consensus 71 -----------~-----~~~~~~l~~~~~~~------------~~D-vv~~~~~~~~~~~~~~~~~--------~~~~~~ 113 (394)
T 3okp_A 71 -----------T-----PTTAHAMAEIIRER------------EID-NVWFGAAAPLALMAGTAKQ--------AGASKV 113 (394)
T ss_dssp -----------C-----HHHHHHHHHHHHHT------------TCS-EEEESSCTTGGGGHHHHHH--------TTCSEE
T ss_pred -----------c-----hhhHHHHHHHHHhc------------CCC-EEEECCcchHHHHHHHHHh--------cCCCcE
Confidence 0 12233344444443 499 9999976543 33333333 3665 8
Q ss_pred EEEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCch
Q 010448 161 VFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVEL 240 (510)
Q Consensus 161 V~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~ 240 (510)
|+++|+....... ......+++..++.+|.++++|+..++.+.+. ++ +
T Consensus 114 i~~~h~~~~~~~~----------------------------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~--~~-~- 161 (394)
T 3okp_A 114 IASTHGHEVGWSM----------------------------LPGSRQSLRKIGTEVDVLTYISQYTLRRFKSA--FG-S- 161 (394)
T ss_dssp EEECCSTHHHHTT----------------------------SHHHHHHHHHHHHHCSEEEESCHHHHHHHHHH--HC-S-
T ss_pred EEEeccchhhhhh----------------------------cchhhHHHHHHHHhCCEEEEcCHHHHHHHHHh--cC-C-
Confidence 9999964320000 00122445778899999999999999998862 12 1
Q ss_pred hhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcccccChhhHH
Q 010448 241 DNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILA 320 (510)
Q Consensus 241 ~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li 320 (510)
..++.+||||+|.+.|.+.. ...+..+++++|++. +.++|+|+||+.+.||++.++
T Consensus 162 -----~~~~~vi~ngv~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~i~~~G~~~~~Kg~~~li 217 (394)
T 3okp_A 162 -----HPTFEHLPSGVDVKRFTPAT-----------------PEDKSATRKKLGFTD--TTPVIACNSRLVPRKGQDSLI 217 (394)
T ss_dssp -----SSEEEECCCCBCTTTSCCCC-----------------HHHHHHHHHHTTCCT--TCCEEEEESCSCGGGCHHHHH
T ss_pred -----CCCeEEecCCcCHHHcCCCC-----------------chhhHHHHHhcCCCc--CceEEEEEeccccccCHHHHH
Confidence 23799999999999887632 223577889999873 458999999999999999999
Q ss_pred HHHHhhhh--CCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEeCCCC-------CCccHH
Q 010448 321 AAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF-------EPCGLI 391 (510)
Q Consensus 321 ~a~~~l~~--~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ps~~-------E~~g~~ 391 (510)
+|+.++.+ ++++|+|+|+|+ ..+.+++++.....+|.+.+..+.+++..+|+.||++|+||.+ |++|++
T Consensus 218 ~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~ 295 (394)
T 3okp_A 218 KAMPQVIAARPDAQLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIV 295 (394)
T ss_dssp HHHHHHHHHSTTCEEEEECCCT--THHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHH
T ss_pred HHHHHHHhhCCCeEEEEEcCch--HHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcH
Confidence 99999976 689999999987 5667777765555679999999999999999999999999999 999999
Q ss_pred HHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhhCHHHHHHHHHHH---hhcc
Q 010448 392 QLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG---MAQD 468 (510)
Q Consensus 392 ~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~---~~~~ 468 (510)
++|||++|+|||+++.||..|++.++ +|+++ +++|+++++++|.+++++ ++.+.++++++ +.++
T Consensus 296 ~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~----------~~~d~~~l~~~i~~l~~~--~~~~~~~~~~~~~~~~~~ 362 (394)
T 3okp_A 296 YLEAQACGVPVIAGTSGGAPETVTPA-TGLVV----------EGSDVDKLSELLIELLDD--PIRRAAMGAAGRAHVEAE 362 (394)
T ss_dssp HHHHHHTTCCEEECSSTTGGGGCCTT-TEEEC----------CTTCHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCChHHHHhcC-CceEe----------CCCCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998 99998 889999999999999997 66666666554 5678
Q ss_pred CChHHHHHHHHHHHHHHHHc
Q 010448 469 LSWKGPAKKWEETLLNLEVA 488 (510)
Q Consensus 469 fs~~~~~~~~~~~y~~l~~~ 488 (510)
|||+.++++|.++|+++..+
T Consensus 363 ~s~~~~~~~~~~~~~~~~r~ 382 (394)
T 3okp_A 363 WSWEIMGERLTNILQSEPRK 382 (394)
T ss_dssp TBHHHHHHHHHHHHHSCCC-
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 99999999999999988755
No 10
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=1.1e-35 Score=304.51 Aligned_cols=276 Identities=15% Similarity=0.124 Sum_probs=210.8
Q ss_pred CCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEEEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCc
Q 010448 126 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 205 (510)
Q Consensus 126 ~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
+|| |||+|.+....+..+++ .++|+|+++|+..... . ...
T Consensus 126 ~~D-vv~~~~~~~~~~~~~~~---------~~~p~v~~~h~~~~~~-------------~-----------------~~~ 165 (416)
T 2x6q_A 126 SFD-YVLVHDPQPAALIEFYE---------KKSPWLWRCHIDLSSP-------------N-----------------REF 165 (416)
T ss_dssp GSS-EEEEESSTTGGGGGGSC---------CCSCEEEECCSCCSSC-------------C-----------------HHH
T ss_pred CCC-EEEEeccchhhHHHHHH---------hcCCEEEEEccccCCc-------------c-----------------HHH
Confidence 599 99999876543322211 2489999999643210 0 011
Q ss_pred chHHHHHHHhcccee-ecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHH
Q 010448 206 INWMKAGILESDMVL-TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 284 (510)
Q Consensus 206 ~~~~~~~~~~ad~vi-~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (510)
..+++..+..+|.++ ++|+...+.+ + ..++.+||||+|...+.+.. ....
T Consensus 166 ~~~~~~~~~~~~~~i~~~s~~~~~~~--------~------~~~~~vi~ngvd~~~~~~~~---------------~~~~ 216 (416)
T 2x6q_A 166 WEFLRRFVEKYDRYIFHLPEYVQPEL--------D------RNKAVIMPPSIDPLSEKNVE---------------LKQT 216 (416)
T ss_dssp HHHHHHHHTTSSEEEESSGGGSCTTS--------C------TTTEEECCCCBCTTSTTTSC---------------CCHH
T ss_pred HHHHHHHHHhCCEEEEechHHHHhhC--------C------ccceEEeCCCCChhhhcccc---------------cChh
Confidence 234556677788776 6665443322 1 12799999999987665421 1122
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhh--CCcEEEEEecCC---hhHHHHHHHHHHHCC--Cc
Q 010448 285 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK---KPMEKQLEQLEILYP--EK 357 (510)
Q Consensus 285 ~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~~~~l~i~G~g~---~~~~~~~~~l~~~~~--~~ 357 (510)
....+++++|++. +.++|+|+||+.+.||++.+++|+..+.+ ++++|+|+|+|+ +...+.++++..+.+ ++
T Consensus 217 ~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~ 294 (416)
T 2x6q_A 217 EILRILERFDVDP--EKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYD 294 (416)
T ss_dssp HHHHHHHHTTCCT--TSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTT
T ss_pred hHHHHHHHhCCCC--CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCc
Confidence 3567888899873 55899999999999999999999999976 689999999986 234556666666543 47
Q ss_pred eEEeccC---CHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCC
Q 010448 358 ARGVAKF---NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD 434 (510)
Q Consensus 358 v~~~~~~---~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~ 434 (510)
|.+.+.+ +.+++..+|+.||++|+||..|+||++++|||+||+|||+++.||+.|++.++.+|+++ +
T Consensus 295 V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~----------~ 364 (416)
T 2x6q_A 295 VKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLV----------R 364 (416)
T ss_dssp EEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEE----------S
T ss_pred EEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEE----------C
Confidence 8888744 46778889999999999999999999999999999999999999999999999999998 5
Q ss_pred ccCHHHHHHHHHHHHHhhCHHHHHHHHHHH---hhccCChHHHHHHHHHHHHHHH
Q 010448 435 PVDVAAVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKGPAKKWEETLLNLE 486 (510)
Q Consensus 435 ~~d~~~la~~i~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y~~l~ 486 (510)
|+++++++|.+++++ ++.+.++++++ +.++|||+.++++|.++|++++
T Consensus 365 --d~~~la~~i~~ll~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 365 --DANEAVEVVLYLLKH--PEVSKEMGAKAKERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp --SHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred --CHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 999999999999998 66666666555 4578999999999999999775
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=4.9e-36 Score=305.69 Aligned_cols=275 Identities=18% Similarity=0.216 Sum_probs=216.8
Q ss_pred CCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEEEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCc
Q 010448 126 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 205 (510)
Q Consensus 126 ~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
+|| |||+|.+.....+..+.+. .++|+|+++|+..... . ... ..
T Consensus 107 ~~D-ii~~~~~~~~~~~~~~~~~-------~~~~~i~~~h~~~~~~-----~---------~~~--------------~~ 150 (406)
T 2gek_A 107 DFD-VLHIHEPNAPSLSMLALQA-------AEGPIVATFHTSTTKS-----L---------TLS--------------VF 150 (406)
T ss_dssp CCS-EEEEECCCSSSHHHHHHHH-------EESSEEEEECCCCCSH-----H---------HHH--------------HH
T ss_pred CCC-EEEECCccchHHHHHHHHh-------cCCCEEEEEcCcchhh-----h---------hHH--------------HH
Confidence 499 9999987765554444443 3799999999643211 0 000 01
Q ss_pred chHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHH
Q 010448 206 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 285 (510)
Q Consensus 206 ~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (510)
..+++..++.+|.++++|+..++.+.+. ++ ..++ +||||+|.+.|.+....
T Consensus 151 ~~~~~~~~~~~d~ii~~s~~~~~~~~~~--~~--------~~~~-vi~~~v~~~~~~~~~~~------------------ 201 (406)
T 2gek_A 151 QGILRPYHEKIIGRIAVSDLARRWQMEA--LG--------SDAV-EIPNGVDVASFADAPLL------------------ 201 (406)
T ss_dssp HSTTHHHHTTCSEEEESSHHHHHHHHHH--HS--------SCEE-ECCCCBCHHHHHTCCCC------------------
T ss_pred HHHHHHHHhhCCEEEECCHHHHHHHHHh--cC--------CCcE-EecCCCChhhcCCCchh------------------
Confidence 1223467889999999999999988752 22 2278 99999997766443210
Q ss_pred HHHHHHHhCCCCCCCCcEEEEecCc-ccccChhhHHHHHHhhhh--CCcEEEEEecCChhHHHHHHHHHHHCCCceEEec
Q 010448 286 KEALQAEVGLPVDRNIPVIGFIGRL-EEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVA 362 (510)
Q Consensus 286 ~~~~~~~~g~~~~~~~~~i~~~Grl-~~~Kg~~~li~a~~~l~~--~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~ 362 (510)
.+++ .+.++|+|+|++ .+.||++.+++++..+.+ ++++|+|+|+|+. +.++++..++..+|.+.+
T Consensus 202 -------~~~~--~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~---~~l~~~~~~~~~~v~~~g 269 (406)
T 2gek_A 202 -------DGYP--REGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE---DELREQAGDLAGHLRFLG 269 (406)
T ss_dssp -------TTCS--CSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH---HHHHHHTGGGGGGEEECC
T ss_pred -------hhcc--CCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH---HHHHHHHHhccCcEEEEe
Confidence 1121 245799999999 999999999999999976 5899999999983 666666665555799999
Q ss_pred cCCHHHHHHHHHhCcEEEeCCC-CCCccHHHHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHHHH
Q 010448 363 KFNIPLAHMIIAGADFILIPSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAV 441 (510)
Q Consensus 363 ~~~~~~~~~~~~~adv~v~ps~-~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~l 441 (510)
..+.+++..+|+.||++|+||. .|++|++++|||+||+|||+++.||..|++.++.+|+++ +++|++++
T Consensus 270 ~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~d~~~l 339 (406)
T 2gek_A 270 QVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLV----------PVDDADGM 339 (406)
T ss_dssp SCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEEC----------CTTCHHHH
T ss_pred cCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEe----------CCCCHHHH
Confidence 9999888899999999999996 899999999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHH---hhccCChHHHHHHHHHHHHHHHHcCC
Q 010448 442 STTVRRALATYGTQALAEMMKNG---MAQDLSWKGPAKKWEETLLNLEVAGS 490 (510)
Q Consensus 442 a~~i~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y~~l~~~~~ 490 (510)
+++|.+++++ ++.+.++++++ +. +|||+.++++|.++|++++++..
T Consensus 340 ~~~i~~l~~~--~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~ 388 (406)
T 2gek_A 340 AAALIGILED--DQLRAGYVARASERVH-RYDWSVVSAQIMRVYETVSGAGI 388 (406)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHGG-GGBHHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHcC--HHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999998 55555555554 44 89999999999999999987643
No 12
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.2e-35 Score=303.98 Aligned_cols=278 Identities=14% Similarity=0.104 Sum_probs=217.7
Q ss_pred CCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEEEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCc
Q 010448 126 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 205 (510)
Q Consensus 126 ~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
+|| |||+|.|...+.+.+.+..... ...+++...|+.....
T Consensus 81 ~~D-iv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---------------------------------- 121 (413)
T 3oy2_A 81 KPD-IVMIYNDPIVIGNYLLAMGKCS----HRTKIVLYVDLVSKNI---------------------------------- 121 (413)
T ss_dssp CCS-EEEEEECHHHHHHHHHHGGGCC----SCCEEEEEECCCSBSC----------------------------------
T ss_pred CCC-EEEEcchHHHHHHHHHHhccCC----CCCceeeeccccchhh----------------------------------
Confidence 499 9999976665554444332110 1356677777432200
Q ss_pred chHHHHHHHhcc--ceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchH
Q 010448 206 INWMKAGILESD--MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 283 (510)
Q Consensus 206 ~~~~~~~~~~ad--~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (510)
...++..++.+| .++++|+..++.+.+ +|.+ . ++.+||||+|.+.|.
T Consensus 122 ~~~~~~~~~~~~~~~ii~~S~~~~~~~~~---~~~~-~------~~~vi~ngvd~~~~~--------------------- 170 (413)
T 3oy2_A 122 RENLWWIFSHPKVVGVMAMSKCWISDICN---YGCK-V------PINIVSHFVDTKTIY--------------------- 170 (413)
T ss_dssp CGGGGGGGGCTTEEEEEESSTHHHHHHHH---TTCC-S------CEEECCCCCCCCCCT---------------------
T ss_pred HHHHHHHHhccCCceEEEcCHHHHHHHHH---cCCC-C------ceEEeCCCCCHHHHH---------------------
Confidence 011345577877 999999999999987 4542 2 899999999988772
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhh--CCcEEEEEecCChh----HHHHHHHHHHHCC--
Q 010448 284 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKP----MEKQLEQLEILYP-- 355 (510)
Q Consensus 284 ~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~~~~l~i~G~g~~~----~~~~~~~l~~~~~-- 355 (510)
..+++++++.+.+.++|+|+||+.+.||++.+++|+.++.+ ++++|+|+|+|++. +.+.+++++.+++
T Consensus 171 ----~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~ 246 (413)
T 3oy2_A 171 ----DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVD 246 (413)
T ss_dssp ----THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCS
T ss_pred ----HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcc
Confidence 23566777643357899999999999999999999999875 68999999998742 4467777776654
Q ss_pred Cc-------eEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEEcCCc---------
Q 010448 356 EK-------ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFT--------- 419 (510)
Q Consensus 356 ~~-------v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~--------- 419 (510)
++ +.+.+.++.+++..+|++||++|+||..|+||++++|||+||+|||+|+.||+.|++.++.+
T Consensus 247 ~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~ 326 (413)
T 3oy2_A 247 NVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWI 326 (413)
T ss_dssp CHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEE
T ss_pred cccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCccccccccccc
Confidence 23 56667788899999999999999999999999999999999999999999999999999887
Q ss_pred ------ee--EeccccccCCCCCccCHHHHHHHHHHHHHhhCHHHHHHHHHHH---hhccCChHHHHHHHHHHHHHHHHc
Q 010448 420 ------GF--QMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKGPAKKWEETLLNLEVA 488 (510)
Q Consensus 420 ------G~--l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y~~l~~~ 488 (510)
|+ ++ ++.|+++++++| +++++ ++.+.++++++ +.++|||+.++++|.++|++++++
T Consensus 327 ~~~~~~G~~gl~----------~~~d~~~la~~i-~l~~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 393 (413)
T 3oy2_A 327 SVDDRDGIGGIE----------GIIDVDDLVEAF-TFFKD--EKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRV 393 (413)
T ss_dssp ECTTTCSSCCEE----------EECCHHHHHHHH-HHTTS--HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC-
T ss_pred ccccccCcceee----------CCCCHHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 88 88 889999999999 99998 66666666555 457899999999999999999876
Q ss_pred CC
Q 010448 489 GS 490 (510)
Q Consensus 489 ~~ 490 (510)
..
T Consensus 394 ~~ 395 (413)
T 3oy2_A 394 ES 395 (413)
T ss_dssp --
T ss_pred cC
Confidence 43
No 13
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=4.1e-37 Score=310.16 Aligned_cols=229 Identities=16% Similarity=0.189 Sum_probs=188.8
Q ss_pred hccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhC
Q 010448 215 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 294 (510)
Q Consensus 215 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 294 (510)
.+|.++++|+..++.+.+. +|.+.+ ++.+||||+|.+.|.+... ...+..+++++|
T Consensus 136 ~~d~ii~~s~~~~~~~~~~--~~~~~~------~~~vi~ngv~~~~~~~~~~----------------~~~~~~~~~~~~ 191 (374)
T 2iw1_A 136 KSTKLMMLTDKQIADFQKH--YQTEPE------RFQILPPGIYPDRKYSEQI----------------PNSREIYRQKNG 191 (374)
T ss_dssp CCCEEEESCHHHHHHHHHH--HCCCGG------GEEECCCCCCGGGSGGGSC----------------TTHHHHHHHHTT
T ss_pred CCcEEEEcCHHHHHHHHHH--hCCChh------heEEecCCcCHHhcCcccc----------------hhHHHHHHHHhC
Confidence 6999999999999998752 355544 8999999999887765431 112457888899
Q ss_pred CCCCCCCcEEEEecCcccccChhhHHHHHHhhhh---CCcEEEEEecCChhHHHHHHHHHHHCC--CceEEeccCCHHHH
Q 010448 295 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK---ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLA 369 (510)
Q Consensus 295 ~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~---~~~~l~i~G~g~~~~~~~~~~l~~~~~--~~v~~~~~~~~~~~ 369 (510)
++. +.++++|+||+.+.||++.+++++..+.+ ++++|+|+|+|+. +.+++++.+++ .+|.+.+.. +++
T Consensus 192 ~~~--~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~v~~~g~~--~~~ 264 (374)
T 2iw1_A 192 IKE--QQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP---RKFEALAEKLGVRSNVHFFSGR--NDV 264 (374)
T ss_dssp CCT--TCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC---HHHHHHHHHHTCGGGEEEESCC--SCH
T ss_pred CCC--CCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH---HHHHHHHHHcCCCCcEEECCCc--ccH
Confidence 873 45899999999999999999999999875 4899999999873 34555555443 468887753 446
Q ss_pred HHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCC-ccCHHHHHHHHHHH
Q 010448 370 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD-PVDVAAVSTTVRRA 448 (510)
Q Consensus 370 ~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~-~~d~~~la~~i~~l 448 (510)
..+|+.||++++||..|+||++++|||+||+|||+++.||..|++.++.+|+++ + ++|+++++++|.++
T Consensus 265 ~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~----------~~~~~~~~l~~~i~~l 334 (374)
T 2iw1_A 265 SELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVI----------AEPFSQEQLNEVLRKA 334 (374)
T ss_dssp HHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEE----------CSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEe----------CCCCCHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999998 6 88999999999999
Q ss_pred HHhhCHHHHHHHHHHHh--hccCChHHHHHHHHHHHHHHH
Q 010448 449 LATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLLNLE 486 (510)
Q Consensus 449 l~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~~l~ 486 (510)
+++ ++.+.++++++. .++|+|+..++++.++++..+
T Consensus 335 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 372 (374)
T 2iw1_A 335 LTQ--SPLRMAWAENARHYADTQDLYSLPEKAADIITGGL 372 (374)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC-
T ss_pred HcC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 998 666667766653 457899999999999998765
No 14
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=100.00 E-value=5.7e-36 Score=310.25 Aligned_cols=343 Identities=16% Similarity=0.167 Sum_probs=234.6
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCcCCCCCCCCCCCCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEEEecCCCc--
Q 010448 92 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAY-- 169 (510)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~tiH~~~~-- 169 (510)
+.+...+|+++++++++.+..++. ++|| |+|+|+|++++++.+++... .++++|+|+|++.+
T Consensus 156 ~~dd~~~F~y~~~avl~~l~~~~~---------~~pd-IiH~HDW~tg~~~~~Lk~~~------~~i~tVfTiH~telGR 219 (725)
T 3nb0_A 156 ETNDAILLGYTVAWFLGEVAHLDS---------QHAI-VAHFHEWLAGVALPLCRKRR------IDVVTIFTTHATLLGR 219 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC---------SEEE-EEEEESGGGCTHHHHHHHTT------CSCEEEEEESSCHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhcCC---------CCCc-EEEeCchhhhHHHHHHHHhC------CCCCEEEEEecchhhh
Confidence 556889999999999998876642 2489 99999999999999999754 68999999999853
Q ss_pred ----ccccCccc-hhhcCCChhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhh
Q 010448 170 ----QGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII 244 (510)
Q Consensus 170 ----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~ 244 (510)
++.++... +...+.+..-.. .-.....++++.++..||.|+|||+.+++++... ++.+.
T Consensus 220 ~lagqg~~~~y~~L~~~~~d~ea~~----------~~i~~~~~~EKaga~~AD~ITTVS~~yA~Ei~~L--l~r~~---- 283 (725)
T 3nb0_A 220 YLCASGSFDFYNCLESVDVDHEAGR----------FGIYHRYCIERAAAHSADVFTTVSQITAFEAEHL--LKRKP---- 283 (725)
T ss_dssp HHTSSSCSCHHHHGGGCCHHHHHHH----------TTCHHHHHHHHHHHHHSSEEEESSHHHHHHHHHH--TSSCC----
T ss_pred hhhhcCCCchhhhhhhcCCChhhhh----------hchhHHHHHHHHHHHhCCEEEECCHHHHHHHHHH--hcCCC----
Confidence 23322110 111111111000 0011345778999999999999999999999862 33332
Q ss_pred hcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHh------CCCCC-CCCcEEEEecCcc-cccCh
Q 010448 245 RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV------GLPVD-RNIPVIGFIGRLE-EQKGS 316 (510)
Q Consensus 245 ~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~-~~~~~i~~~Grl~-~~Kg~ 316 (510)
-.+||||+|++.|.|... +.+.+..++..+.+.+ |++.+ ++.++++.+||++ +.||+
T Consensus 284 ----d~iIpNGID~~~f~p~~~-----------~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liifivgRle~~nKGi 348 (725)
T 3nb0_A 284 ----DGILPNGLNVIKFQAFHE-----------FQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGA 348 (725)
T ss_dssp ----SEECCCCBCCCCCSSTTH-----------HHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTH
T ss_pred ----CEEEcCCccccccCcchh-----------hHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEEEeccccCCH
Confidence 233999999999988532 1234445555554433 34433 3345666789999 78999
Q ss_pred hhHHHHHHhhhh----C-----CcEEEEEecCChh--------------HHHH---------------------------
Q 010448 317 DILAAAIPHFIK----E-----NVQIIVLGTGKKP--------------MEKQ--------------------------- 346 (510)
Q Consensus 317 ~~li~a~~~l~~----~-----~~~l~i~G~g~~~--------------~~~~--------------------------- 346 (510)
|.+++|+.+|.. . -+.|+|+..+... +.+.
T Consensus 349 Dl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (725)
T 3nb0_A 349 DMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTE 428 (725)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSS
T ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCC
Confidence 999999999874 1 2567777654211 0000
Q ss_pred --------------------------------------------------HHHHHHHC--CC--ceEEeccC-CHH----
Q 010448 347 --------------------------------------------------LEQLEILY--PE--KARGVAKF-NIP---- 367 (510)
Q Consensus 347 --------------------------------------------------~~~l~~~~--~~--~v~~~~~~-~~~---- 367 (510)
++++.... .+ +|++...+ ++.
T Consensus 429 ~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf 508 (725)
T 3nb0_A 429 LPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPIL 508 (725)
T ss_dssp SCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSS
T ss_pred CCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccc
Confidence 00000000 01 24555555 222
Q ss_pred --HHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEEcC-------CceeEeccccccCCCCCccCH
Q 010448 368 --LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-------FTGFQMGSFSVDCEAVDPVDV 438 (510)
Q Consensus 368 --~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~-------~~G~l~~~~~~~~~~~~~~d~ 438 (510)
+...+|+.||++|+||.+||||++++||||||+|||+|+.||+.|.+.++ .+|+++.. .++.|+
T Consensus 509 ~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~~-------rd~~d~ 581 (725)
T 3nb0_A 509 GLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVD-------RRFKAP 581 (725)
T ss_dssp CCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEEEC-------CSSSCH
T ss_pred hhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCceEEEeC-------CCCCCH
Confidence 45679999999999999999999999999999999999999999998875 37987610 024567
Q ss_pred HHHHHHHHHHHHhh---CHHHHHHHHHHH--hhccCChHHHHHHHHHHHHHHHHc
Q 010448 439 AAVSTTVRRALATY---GTQALAEMMKNG--MAQDLSWKGPAKKWEETLLNLEVA 488 (510)
Q Consensus 439 ~~la~~i~~ll~~~---~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y~~l~~~ 488 (510)
++++++|.+++... ++..+.++++++ +.+.|||++++++|.++|+.++.+
T Consensus 582 ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL~~ 636 (725)
T 3nb0_A 582 DESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLALRR 636 (725)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 77777776666531 244555565555 467899999999999999999864
No 15
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.8e-35 Score=293.56 Aligned_cols=208 Identities=15% Similarity=0.134 Sum_probs=179.7
Q ss_pred ccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhCC
Q 010448 216 SDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL 295 (510)
Q Consensus 216 ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 295 (510)
+|.++++|+..++.+.+ ..++.+||||+|.+.|.+... ..
T Consensus 120 ~d~ii~~S~~~~~~~~~-------------~~~~~vi~ngvd~~~~~~~~~---------------------------~~ 159 (342)
T 2iuy_A 120 PVGCTYSSRAQRAHCGG-------------GDDAPVIPIPVDPARYRSAAD---------------------------QV 159 (342)
T ss_dssp CTTEEESCHHHHHHTTC-------------CTTSCBCCCCBCGGGSCCSTT---------------------------CC
T ss_pred ceEEEEcCHHHHHHHhc-------------CCceEEEcCCCChhhcCcccc---------------------------cC
Confidence 89999999999998874 118999999999888766431 01
Q ss_pred CCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh
Q 010448 296 PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 375 (510)
Q Consensus 296 ~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 375 (510)
.+.++|+|+||+.+.||++.+++|++.+ +++|+|+|+|+ ..+.++++..+++++|.+.+..+.+++..+|+.
T Consensus 160 ---~~~~~i~~vG~~~~~Kg~~~li~a~~~~---~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~ 231 (342)
T 2iuy_A 160 ---AKEDFLLFMGRVSPHKGALEAAAFAHAC---GRRLVLAGPAW--EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS 231 (342)
T ss_dssp ---CCCSCEEEESCCCGGGTHHHHHHHHHHH---TCCEEEESCCC--CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH
T ss_pred ---CCCCEEEEEeccccccCHHHHHHHHHhc---CcEEEEEeCcc--cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh
Confidence 2446899999999999999999999988 89999999987 455666666666577999999999988899999
Q ss_pred CcEEEeCCC----------CCCccHHHHHHHHhCCCcEEecCCCccceEEc--CCceeEeccccccCCCCCccCHHHHHH
Q 010448 376 ADFILIPSR----------FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDCEAVDPVDVAAVST 443 (510)
Q Consensus 376 adv~v~ps~----------~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~--~~~G~l~~~~~~~~~~~~~~d~~~la~ 443 (510)
||++++||. .|+||++++|||+||+|||+++.||+.|++.+ +.+|+++ ++ |++++++
T Consensus 232 adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~----------~~-d~~~l~~ 300 (342)
T 2iuy_A 232 AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGT----------DF-APDEARR 300 (342)
T ss_dssp CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSS----------CC-CHHHHHH
T ss_pred CCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEc----------CC-CHHHHHH
Confidence 999999999 79999999999999999999999999999999 8999987 88 9999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHcC
Q 010448 444 TVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG 489 (510)
Q Consensus 444 ~i~~ll~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~~ 489 (510)
+|.++++ .+.+++.+.++|||+.++++|.++|++++++.
T Consensus 301 ~i~~l~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 301 TLAGLPA-------SDEVRRAAVRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp HHHTSCC-------HHHHHHHHHHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 9998876 33444555688999999999999999998763
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.97 E-value=7.4e-32 Score=275.05 Aligned_cols=271 Identities=11% Similarity=0.101 Sum_probs=188.5
Q ss_pred CCCeEEEeccchhhhHHHHHHHh-hcCCCCCCCCcEEEEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCC
Q 010448 126 GEDVVFVANDWHTSLIPCYLKTM-YKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 204 (510)
Q Consensus 126 ~pD~iih~h~~~~~~~~~~l~~~-~~~~~~~~~~~~V~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (510)
++| |||+|.|.++.....+... ....+ ....|.++.+|+.... .++. ..
T Consensus 132 ~~D-vv~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~-~~~~---------------------------~~ 181 (413)
T 2x0d_A 132 KHD-IFIATAWWTAYAAQRIVSWQSDTYG-IPPNKILYIIQDFEPG-FYQW---------------------------SS 181 (413)
T ss_dssp TTE-EEEECSHHHHHHHHHHHHHHHHHHT-CCCCCEEEEECSCGGG-GSCS---------------------------SH
T ss_pred CCC-EEEEehHHHHHHHHHhhhhhhhhcc-cccCcEEEEEeechhh-cCcc---------------------------Ch
Confidence 489 9999988776655443211 00000 0356888888854320 0000 00
Q ss_pred cchHHHHHHHhcc--ceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhch
Q 010448 205 KINWMKAGILESD--MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 282 (510)
Q Consensus 205 ~~~~~~~~~~~ad--~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (510)
...+.+..+..++ .++++|+.+++.+.+ .|++.. ++.++|||+|.+.|.+..
T Consensus 182 ~~~~~~~~~~~~~~~~vi~~S~~~~~~l~~---~g~~~~------~~~~i~~g~d~~~~~~~~----------------- 235 (413)
T 2x0d_A 182 QYVLAESTYKYRGPQIAVFNSELLKQYFNN---KGYNFT------DEYFFQPKINTTLKNYIN----------------- 235 (413)
T ss_dssp HHHHHHHTTSCCSCEEEEEESHHHHHHHHH---HTCCCS------EEEEECCCCCHHHHTTTT-----------------
T ss_pred HHHHHHHHhccCCceEEEEcCHHHHHHHHH---cCCCCC------ceEEeCCCcCchhhcccc-----------------
Confidence 0112233445454 589999999999986 344322 688999999866443211
Q ss_pred HHHHHHHHHHhCCCCCCCCcEEEEecCc-ccccChhhHHHHHHhhhh--CC---cEEEEEecCChhHHHHHHHHHHHCCC
Q 010448 283 PLLKEALQAEVGLPVDRNIPVIGFIGRL-EEQKGSDILAAAIPHFIK--EN---VQIIVLGTGKKPMEKQLEQLEILYPE 356 (510)
Q Consensus 283 ~~~~~~~~~~~g~~~~~~~~~i~~~Grl-~~~Kg~~~li~a~~~l~~--~~---~~l~i~G~g~~~~~~~~~~l~~~~~~ 356 (510)
.+. ++...++++||+ .+.||++.+++|+..+.+ ++ ++|+++|+|+.. .++ ....
T Consensus 236 ----------~~~---~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-----~~l--~~~~ 295 (413)
T 2x0d_A 236 ----------DKR---QKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-----IAL--GKGI 295 (413)
T ss_dssp ----------SCC---CCCSEEEEEECTTCGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-----EEE--ETTE
T ss_pred ----------ccc---CCCCEEEEEecCchhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-----hhc--CCcC
Confidence 011 234688899996 689999999999999875 43 899999998732 111 1224
Q ss_pred ceEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCCcc
Q 010448 357 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPV 436 (510)
Q Consensus 357 ~v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~ 436 (510)
+|.+.+..+.+++..+|++||++++||..|+||++++||||||+|||++ .+|..|++.++.+|+++ +++
T Consensus 296 ~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv----------~~~ 364 (413)
T 2x0d_A 296 HLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSL----------EQL 364 (413)
T ss_dssp EEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEE----------SSC
T ss_pred cEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEe----------CCC
Confidence 6889999999999999999999999999999999999999999999995 46678999999999998 999
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 010448 437 DVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 487 (510)
Q Consensus 437 d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 487 (510)
|+++|+++|.++++|++ .+.+ +.....++|||+.+.++ .++|+++.+
T Consensus 365 d~~~la~ai~~ll~~~~--~~~~-~~~~~~~~~~W~~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 365 NPENIAETLVELCMSFN--NRDV-DKKESSNMMFYINEFNE-FSFIKEIEE 411 (413)
T ss_dssp SHHHHHHHHHHHHHHTC----------CCBSCGGGCCCC----TTHHHHHT
T ss_pred CHHHHHHHHHHHHcCHH--HHHH-hHHHHHHhCCHHHHHHH-HHHHHHHHh
Confidence 99999999999999843 3333 22223568999999877 677777654
No 17
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.97 E-value=4.3e-29 Score=258.02 Aligned_cols=286 Identities=14% Similarity=0.128 Sum_probs=201.3
Q ss_pred CCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEEEecCCCcccccCccch-hhcCCChhhhcccccccCCCCCCCCCc
Q 010448 127 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDF-GLLNLPAQFKSSFDFIDGYNKPVRGRK 205 (510)
Q Consensus 127 pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~tiH~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
+| |||+|+++..+++.+++... .++|+++++|.. +|.... ..+...
T Consensus 124 ~D-iV~vHdyhl~~l~~~lr~~~------~~~~i~~~~H~p-----fp~~~~~~~lp~~--------------------- 170 (482)
T 1uqt_A 124 DD-IIWIHDYHLLPFAHELRKRG------VNNRIGFFLHIP-----FPTPEIFNALPTY--------------------- 170 (482)
T ss_dssp TC-EEEEESGGGTTHHHHHHHTT------CCSCEEEECCSC-----CCCHHHHTTSTTH---------------------
T ss_pred CC-EEEEECchHHHHHHHHHHhC------CCCcEEEEEcCC-----CCCHHHHhhCccH---------------------
Confidence 57 99999999999998887653 589999999953 332211 111100
Q ss_pred chHHHHHHHhccceeecCHHHHHHHhcC---------------CCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccc
Q 010448 206 INWMKAGILESDMVLTVSPHYAQELVSG---------------EDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIG 270 (510)
Q Consensus 206 ~~~~~~~~~~ad~vi~vS~~~~~~l~~~---------------~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~ 270 (510)
..+...+..+|.+...+..+.+.+.+. ..+| . ..++.+||||||.+.|.+....
T Consensus 171 -~~il~~ll~~d~i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~g-~------~~~v~vip~GID~~~f~~~~~~--- 239 (482)
T 1uqt_A 171 -DTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWG-K------AFRTEVYPIGIEPKEIAKQAAG--- 239 (482)
T ss_dssp -HHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETT-E------EEEEEECCCCCCHHHHHHHHHS---
T ss_pred -HHHHHhhhccCeEEEECHHHHHHHHHHHHHHhCCccccCCeEEECC-e------EEEEEEEeccCCHHHHHHHhcC---
Confidence 111222334555555555444443210 0012 1 1378999999998877542100
Q ss_pred cCCCcCChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhh--C----CcEEEEEecCC----
Q 010448 271 VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGK---- 340 (510)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~----~~~l~i~G~g~---- 340 (510)
+.... ...+|++++ ++++|+++||+++.||++.+++|++++.+ + +++|+++|.+.
T Consensus 240 ---------~~~~~-~~~lr~~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~ 304 (482)
T 1uqt_A 240 ---------PLPPK-LAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDV 304 (482)
T ss_dssp ---------CCCHH-HHHHHHHTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTS
T ss_pred ---------cchHH-HHHHHHHhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccch
Confidence 00111 346777776 45799999999999999999999999865 2 47899999531
Q ss_pred h---hHHHHHHHHHHHC----C----CceEE-eccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCC-----CcE
Q 010448 341 K---PMEKQLEQLEILY----P----EKARG-VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT-----VPI 403 (510)
Q Consensus 341 ~---~~~~~~~~l~~~~----~----~~v~~-~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~-----Pvv 403 (510)
+ .+.+.+++++.+. + ..+.+ .+.++.+++..+|+.||++++||..||||++++||||||+ |+|
T Consensus 305 ~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV 384 (482)
T 1uqt_A 305 QAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLV 384 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEE
Confidence 1 3455666665432 1 12554 4567888999999999999999999999999999999997 899
Q ss_pred EecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhhCHHHHHHHHHHH--hhccCChHHHHHHHHHH
Q 010448 404 VASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEET 481 (510)
Q Consensus 404 ~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~ 481 (510)
+|+.+|..+.+ + +|+++ +|.|+++++++|.++++++ ++.+.++++++ ...+|||+..++++.+.
T Consensus 385 ~S~~~G~~~~l-~--~g~lv----------~p~d~~~lA~ai~~lL~~~-~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~ 450 (482)
T 1uqt_A 385 LSQFAGAANEL-T--SALIV----------NPYDRDEVAAALDRALTMS-LAERISRHAEMLDVIVKNDINHWQECFISD 450 (482)
T ss_dssp EETTBGGGGTC-T--TSEEE----------CTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EECCCCCHHHh-C--CeEEE----------CCCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99988888777 2 78998 9999999999999999863 34444444443 23569999999999999
Q ss_pred HHHH
Q 010448 482 LLNL 485 (510)
Q Consensus 482 y~~l 485 (510)
|+++
T Consensus 451 l~~~ 454 (482)
T 1uqt_A 451 LKQI 454 (482)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 9876
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=4.8e-31 Score=269.02 Aligned_cols=201 Identities=15% Similarity=0.111 Sum_probs=162.9
Q ss_pred hHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHH
Q 010448 207 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 286 (510)
Q Consensus 207 ~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (510)
.+++..++.+|.|+++|+..++.+.+ .| ++.+||||+|.+.|.+...
T Consensus 170 ~~~~~~~~~ad~vi~~S~~~~~~~~~---~~----------~i~vipngvd~~~f~~~~~-------------------- 216 (406)
T 2hy7_A 170 REFDRVAPTLDVIALVSPAMAAEVVS---RD----------NVFHVGHGVDHNLDQLGDP-------------------- 216 (406)
T ss_dssp HHHHHHGGGCSEEEESCGGGGGGCSC---ST----------TEEECCCCBCTTHHHHHCS--------------------
T ss_pred HHHHHHHHhCCEEEEcCHHHHHHHHh---cC----------CEEEEcCCcChHhcCcccc--------------------
Confidence 45677889999999999999988765 22 6899999999887643211
Q ss_pred HHHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCH
Q 010448 287 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 366 (510)
Q Consensus 287 ~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~ 366 (510)
.+ .++.++++|+||+.+.||+ ++++.+. .++++|+|+|+|+ .+++ ...++|.+.+..+.
T Consensus 217 --------~~-~~~~~~i~~vGrl~~~Kg~---~~~l~~~-~~~~~l~ivG~g~------~~~~--~l~~~V~f~G~~~~ 275 (406)
T 2hy7_A 217 --------SP-YAEGIHAVAVGSMLFDPEF---FVVASKA-FPQVTFHVIGSGM------GRHP--GYGDNVIVYGEMKH 275 (406)
T ss_dssp --------CS-CCSSEEEEEECCTTBCHHH---HHHHHHH-CTTEEEEEESCSS------CCCT--TCCTTEEEECCCCH
T ss_pred --------cc-cCCCcEEEEEeccccccCH---HHHHHHh-CCCeEEEEEeCch------HHhc--CCCCCEEEcCCCCH
Confidence 01 1233799999999999998 4444332 2689999999887 1111 23357999999998
Q ss_pred HHHHHHHHhCcEEEeCCCCCCccHHHHHHH-------HhCCCcEEecCCCccceEEcCCceeE-eccccccCCCCCccCH
Q 010448 367 PLAHMIIAGADFILIPSRFEPCGLIQLHAM-------RYGTVPIVASTGGLVDTVEEGFTGFQ-MGSFSVDCEAVDPVDV 438 (510)
Q Consensus 367 ~~~~~~~~~adv~v~ps~~E~~g~~~~Eam-------a~G~Pvv~s~~gg~~e~v~~~~~G~l-~~~~~~~~~~~~~~d~ 438 (510)
+++..+|++||++|+||..|+||++++||| |||+|||+|+. +.++.+|++ + +++|+
T Consensus 276 ~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v----------~~~d~ 339 (406)
T 2hy7_A 276 AQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGY----------TPGNA 339 (406)
T ss_dssp HHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEE----------CTTCH
T ss_pred HHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEe----------CCCCH
Confidence 888899999999999999999999999999 99999999997 566789999 8 99999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHhhccCChHHHHHHHHHH--HHHHH
Q 010448 439 AAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEET--LLNLE 486 (510)
Q Consensus 439 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~--y~~l~ 486 (510)
++|+++|.++++++. . ...++|||+.+++++.++ |+++.
T Consensus 340 ~~la~ai~~ll~~~~--------~-~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 340 DSVIAAITQALEAPR--------V-RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp HHHHHHHHHHHHCCC--------C-CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred HHHHHHHHHHHhCcc--------h-hhhhcCCHHHHHHHHHHhhcccccC
Confidence 999999999999854 1 346789999999999999 87654
No 19
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.96 E-value=1.6e-28 Score=246.60 Aligned_cols=322 Identities=15% Similarity=0.003 Sum_probs=215.7
Q ss_pred hhhHHHHHHHCCCcEEEEeeCCCCcccccCCcEEEEEEeCCeEEEEEEEEEeeCCceEEEEeCccccccccCCCCCcccC
Q 010448 6 STKLDSFIQANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYG 85 (510)
Q Consensus 6 ~~~la~~l~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~p~~~~~~~~~~~~~~y~ 85 (510)
+..|+++|+++||+|+++++..+...... ...|++++.++.+.+... ....
T Consensus 23 ~~~la~~L~~~G~~V~v~~~~~~~~~~~~----------------------~~~g~~~~~~~~~~~~~~-------~~~~ 73 (364)
T 1f0k_A 23 GLAVAHHLMAQGWQVRWLGTADRMEADLV----------------------PKHGIEIDFIRISGLRGK-------GIKA 73 (364)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTSTHHHHG----------------------GGGTCEEEECCCCCCTTC-------CHHH
T ss_pred HHHHHHHHHHcCCEEEEEecCCcchhhhc----------------------cccCCceEEecCCccCcC-------ccHH
Confidence 45899999999999999998643211110 013677766643322110 0000
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhhhcCcCCCCCCCCCCCCCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEEEec
Q 010448 86 PRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH 165 (510)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~tiH 165 (510)
......++......+.+.+++. +|| |||+|.....+...++.+. .++|+|++.|
T Consensus 74 ------~~~~~~~~~~~~~~l~~~l~~~------------~pD-vv~~~~~~~~~~~~~~~~~-------~~~p~v~~~~ 127 (364)
T 1f0k_A 74 ------LIAAPLRIFNAWRQARAIMKAY------------KPD-VVLGMGGYVSGPGGLAAWS-------LGIPVVLHEQ 127 (364)
T ss_dssp ------HHTCHHHHHHHHHHHHHHHHHH------------CCS-EEEECSSTTHHHHHHHHHH-------TTCCEEEEEC
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhc------------CCC-EEEEeCCcCchHHHHHHHH-------cCCCEEEEec
Confidence 0000111122223334444443 499 9999865444333333333 4899999999
Q ss_pred CCCcccccCccchhhcCCChhhhcccccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhhh
Q 010448 166 NIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR 245 (510)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~ 245 (510)
+.. +. ...+...+.+|.+++.|+.. ++
T Consensus 128 ~~~-----~~-------------------------------~~~~~~~~~~d~v~~~~~~~-----------~~------ 154 (364)
T 1f0k_A 128 NGI-----AG-------------------------------LTNKWLAKIATKVMQAFPGA-----------FP------ 154 (364)
T ss_dssp SSS-----CC-------------------------------HHHHHHTTTCSEEEESSTTS-----------SS------
T ss_pred CCC-----Cc-------------------------------HHHHHHHHhCCEEEecChhh-----------cC------
Confidence 532 10 01233456799999987643 11
Q ss_pred cCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhCCCCCCCCc-EEEEecCcccccChhhHHHHHH
Q 010448 246 KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP-VIGFIGRLEEQKGSDILAAAIP 324 (510)
Q Consensus 246 ~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~i~~~Grl~~~Kg~~~li~a~~ 324 (510)
++.+|+||+|.+.+.+.. .+++++++. +.+ ++++.|++.+.||.+.+++|+.
T Consensus 155 --~~~~i~n~v~~~~~~~~~-----------------------~~~~~~~~~--~~~~il~~~g~~~~~k~~~~li~a~~ 207 (364)
T 1f0k_A 155 --NAEVVGNPVRTDVLALPL-----------------------PQQRLAGRE--GPVRVLVVGGSQGARILNQTMPQVAA 207 (364)
T ss_dssp --SCEECCCCCCHHHHTSCC-----------------------HHHHHTTCC--SSEEEEEECTTTCCHHHHHHHHHHHH
T ss_pred --CceEeCCccchhhcccch-----------------------hhhhcccCC--CCcEEEEEcCchHhHHHHHHHHHHHH
Confidence 578999999876554321 134566642 334 5566779999999999999999
Q ss_pred hhhhCCcE-EEEEecCChhHHHHHHHHHHHCC-CceEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCc
Q 010448 325 HFIKENVQ-IIVLGTGKKPMEKQLEQLEILYP-EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVP 402 (510)
Q Consensus 325 ~l~~~~~~-l~i~G~g~~~~~~~~~~l~~~~~-~~v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pv 402 (510)
.+.+ +++ ++++|+|+ . +.++++..+++ .+|.+.+.. +++..+|+.||++|+||. |++++|||+||+||
T Consensus 208 ~l~~-~~~~l~i~G~~~--~-~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pv 277 (364)
T 1f0k_A 208 KLGD-SVTIWHQSGKGS--Q-QSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPA 277 (364)
T ss_dssp HHGG-GEEEEEECCTTC--H-HHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCE
T ss_pred HhcC-CcEEEEEcCCch--H-HHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCE
Confidence 9976 788 56788887 2 45666666654 368887766 445579999999999993 99999999999999
Q ss_pred EEecCCCccc-------eEEcCCceeEeccccccCCCCCccC--HHHHHHHHHHHHHhhCHHHHHHHHHHH--hhccCCh
Q 010448 403 IVASTGGLVD-------TVEEGFTGFQMGSFSVDCEAVDPVD--VAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSW 471 (510)
Q Consensus 403 v~s~~gg~~e-------~v~~~~~G~l~~~~~~~~~~~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~--~~~~fs~ 471 (510)
|+++.+|..+ .+.+.++|+++ +++| +++++++|.++ | ++.+.++++++ ..++|+|
T Consensus 278 i~~~~~g~~~~q~~~~~~~~~~g~g~~~----------~~~d~~~~~la~~i~~l--~--~~~~~~~~~~~~~~~~~~~~ 343 (364)
T 1f0k_A 278 LFVPFQHKDRQQYWNALPLEKAGAAKII----------EQPQLSVDAVANTLAGW--S--RETLLTMAERARAASIPDAT 343 (364)
T ss_dssp EECCCCCTTCHHHHHHHHHHHTTSEEEC----------CGGGCCHHHHHHHHHTC--C--HHHHHHHHHHHHHTCCTTHH
T ss_pred EEeeCCCCchhHHHHHHHHHhCCcEEEe----------ccccCCHHHHHHHHHhc--C--HHHHHHHHHHHHHhhccCHH
Confidence 9999998752 34444569998 8888 99999999998 5 66666666665 3568999
Q ss_pred HHHHHHHHHHHHHHH
Q 010448 472 KGPAKKWEETLLNLE 486 (510)
Q Consensus 472 ~~~~~~~~~~y~~l~ 486 (510)
+.+++++.++|++..
T Consensus 344 ~~~~~~~~~~y~~~~ 358 (364)
T 1f0k_A 344 ERVANEVSRVARALE 358 (364)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997653
No 20
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.95 E-value=2.5e-26 Score=234.67 Aligned_cols=295 Identities=14% Similarity=0.181 Sum_probs=214.5
Q ss_pred CCeEEEeccchhhhHHHHHHHhhcCCCCCCCCcEEEEecCCCcccccCccch-hhcCCChhhhcccccccCCCCCCCCCc
Q 010448 127 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDF-GLLNLPAQFKSSFDFIDGYNKPVRGRK 205 (510)
Q Consensus 127 pD~iih~h~~~~~~~~~~l~~~~~~~~~~~~~~~V~tiH~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (510)
++++|..||+|..++|.+++.+. ++.++.|.+|. .||...+ +.+ |.. .
T Consensus 149 ~~D~VwVhDYhL~llp~~lR~~~------~~~~igfFlHi-----PfPs~e~f~~L--p~~------------------~ 197 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVPALLREQR------PDAPILLFVHI-----PWPSADYWRIL--PKE------------------I 197 (496)
T ss_dssp SSCEEEEESGGGTTHHHHHHHHC------TTSCEEEECCS-----CCCCHHHHTTS--CHH------------------H
T ss_pred CCCEEEEeCccHhHHHHHHHhhC------CCCeEEEEEcC-----CCCCHHHHhhC--cHh------------------H
Confidence 34499999999999999999875 68999999994 3443221 111 100 0
Q ss_pred chHHHHHHHhccceeecCHHHHHHHhcCCC--C-CCchhh---hh----hcCCceEecCCCCCCCCCCCCccccccCCCc
Q 010448 206 INWMKAGILESDMVLTVSPHYAQELVSGED--K-GVELDN---II----RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA 275 (510)
Q Consensus 206 ~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~--~-g~~~~~---~~----~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~ 275 (510)
...+-..+..||.|.+.+..+.+.+.+... . |.+.+. .+ ...++.++|+|||++.|.+....
T Consensus 198 r~ell~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-------- 269 (496)
T 3t5t_A 198 RTGILHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-------- 269 (496)
T ss_dssp HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC--------
T ss_pred HHHHHHHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH--------
Confidence 123455677999999999999887654211 1 322110 00 11368899999999988764310
Q ss_pred CChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhh--C---CcEEEEEecC-----C--hhH
Q 010448 276 STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E---NVQIIVLGTG-----K--KPM 343 (510)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~---~~~l~i~G~g-----~--~~~ 343 (510)
....++++++ ++++|+++||+++.||++.+++|+ ++.+ + ++.|+++|.+ + ..+
T Consensus 270 ---------~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l 334 (496)
T 3t5t_A 270 ---------LPEGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADY 334 (496)
T ss_dssp ---------CCTTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHH
T ss_pred ---------HHHHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHH
Confidence 0245667776 457999999999999999999999 7765 3 3668888742 2 245
Q ss_pred HHHHHHHHHHCC----C-ceEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhC---CCcEEecCCCccceEE
Q 010448 344 EKQLEQLEILYP----E-KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG---TVPIVASTGGLVDTVE 415 (510)
Q Consensus 344 ~~~~~~l~~~~~----~-~v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G---~Pvv~s~~gg~~e~v~ 415 (510)
++++++++.+.+ . .|.+.+..+.+++..+|+.||++++||..||||++++|||||| .|+|+|..+|..+.+.
T Consensus 335 ~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~ 414 (496)
T 3t5t_A 335 VHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVLG 414 (496)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHG
T ss_pred HHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhC
Confidence 566666655432 1 4788887888888899999999999999999999999999997 8999999999888883
Q ss_pred cCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhhCHHHHHHHHHHH--hhccCChHHHHHHHHHHHHHHHHc
Q 010448 416 EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLNLEVA 488 (510)
Q Consensus 416 ~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y~~l~~~ 488 (510)
.+|+++ +|.|++++|++|.++++++ .+.+.++.++. ...++++...++.+++-+......
T Consensus 415 --~~allV----------nP~D~~~lA~AI~~aL~m~-~~er~~r~~~~~~~V~~~d~~~W~~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 415 --EYCRSV----------NPFDLVEQAEAISAALAAG-PRQRAEAAARRRDAARPWTLEAWVQAQLDGLAADHAA 476 (496)
T ss_dssp --GGSEEE----------CTTBHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEE----------CCCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhcccc
Confidence 478998 9999999999999999985 33333333333 357799999999999888776544
No 21
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=1e-26 Score=213.17 Aligned_cols=182 Identities=30% Similarity=0.507 Sum_probs=155.6
Q ss_pred ecCCCCCCCCC--CCCccccccCCCcCChhhchHHHHHHHHHHhCCCCCCCCcEEEEecCcc-cccChhhHHHHHHhhh-
Q 010448 252 IVNGMDVQEWN--PLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE-EQKGSDILAAAIPHFI- 327 (510)
Q Consensus 252 Ipngvd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~Grl~-~~Kg~~~li~a~~~l~- 327 (510)
||||+|.+.|. |... .....+..+++++|++ +.++|+|+|++. +.||++.+++++..+.
T Consensus 2 ipngvd~~~f~~~~~~~--------------~~~~~~~~~r~~~~~~---~~~~i~~~G~~~~~~K~~~~li~a~~~l~~ 64 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTG--------------SRDERKKSLLSKFGMD---EGVTFMFIGRFDRGQKGVDVLLKAIEILSS 64 (200)
T ss_dssp ---CCCTTTSSGGGSCS--------------CHHHHHHHHHHHTTCC---SCEEEEEESCBCSSSSCHHHHHHHHHHHTT
T ss_pred CCCccChhhcccccccc--------------chhhHHHHHHHHcCCC---CCCEEEEeeccccccCCHHHHHHHHHHHHh
Confidence 79999999998 6531 1122356788999987 346999999999 9999999999999995
Q ss_pred -h--CCcEEEEEecCChhHHHHHHHHHHHCCCceEE-eccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcE
Q 010448 328 -K--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG-VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPI 403 (510)
Q Consensus 328 -~--~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~-~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv 403 (510)
+ ++++|+|+|.+++...+.++++..+++ +|.+ .+..+.+++..+|+.||++++||..|++|++++|||+||+|||
T Consensus 65 ~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 65 KKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPI 143 (200)
T ss_dssp SGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEE
T ss_pred hccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEE
Confidence 3 589999999988667778888888877 7998 8888988888999999999999999999999999999999999
Q ss_pred EecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH-hhCHHHHHHHHHHH
Q 010448 404 VASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA-TYGTQALAEMMKNG 464 (510)
Q Consensus 404 ~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~ 464 (510)
+++.++..+++ ++.+|+++ ++.|+++++++|.++++ + ++.+.++++++
T Consensus 144 ~~~~~~~~e~~-~~~~g~~~----------~~~~~~~l~~~i~~l~~~~--~~~~~~~~~~a 192 (200)
T 2bfw_A 144 ASAVGGLRDII-TNETGILV----------KAGDPGELANAILKALELS--RSDLSKFRENC 192 (200)
T ss_dssp EESCHHHHHHC-CTTTCEEE----------CTTCHHHHHHHHHHHHHCC--HHHHHHHHHHH
T ss_pred EeCCCChHHHc-CCCceEEe----------cCCCHHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence 99999999999 88999998 88999999999999999 8 66666666655
No 22
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.95 E-value=1e-26 Score=234.37 Aligned_cols=270 Identities=14% Similarity=0.093 Sum_probs=192.1
Q ss_pred CCCeEEEeccc-hhhhHHHHHHHhhcCCCCCCCCcEEEEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCC
Q 010448 126 GEDVVFVANDW-HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 204 (510)
Q Consensus 126 ~pD~iih~h~~-~~~~~~~~l~~~~~~~~~~~~~~~V~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (510)
+|| +||+|.. ...+++.++.+. .++|+|++.|+......+. ..
T Consensus 95 ~pD-vv~~~~~~~~~~~~~~~~~~-------~~ip~v~~~~~~~~~~~~~----------------------------~~ 138 (375)
T 3beo_A 95 KPD-IVLVHGDTTTTFIASLAAFY-------NQIPVGHVEAGLRTWDKYS----------------------------PY 138 (375)
T ss_dssp CCS-EEEEETTSHHHHHHHHHHHH-------TTCCEEEESCCCCCSCTTS----------------------------ST
T ss_pred CCC-EEEEeCCchHHHHHHHHHHH-------HCCCEEEEecccccccccC----------------------------CC
Confidence 599 9999853 333333333333 4899998888531100000 00
Q ss_pred cchHHHHHH-HhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCC-CCCCCCCCCCccccccCCCcCChhhch
Q 010448 205 KINWMKAGI-LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAK 282 (510)
Q Consensus 205 ~~~~~~~~~-~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpng-vd~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (510)
...+.+..+ +.+|.++++|+..++.+.+ .|++.+ ++.+|+|| +|...+.+....
T Consensus 139 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~---~g~~~~------~i~vi~n~~~d~~~~~~~~~~--------------- 194 (375)
T 3beo_A 139 PEEMNRQLTGVMADLHFSPTAKSATNLQK---ENKDES------RIFITGNTAIDALKTTVKETY--------------- 194 (375)
T ss_dssp THHHHHHHHHHHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHCCSSC---------------
T ss_pred hhHhhhhHHhhhhheeeCCCHHHHHHHHH---cCCCcc------cEEEECChhHhhhhhhhhhhh---------------
Confidence 012334434 4599999999999999986 566654 79999999 786544332100
Q ss_pred HHHHHHHHHHhCCCCCCCCcEEEEecCcccc-cChhhHHHHHHhhhh--CCcEEEEEecCC-hhHHHHHHHHHHHCCCce
Q 010448 283 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGK-KPMEKQLEQLEILYPEKA 358 (510)
Q Consensus 283 ~~~~~~~~~~~g~~~~~~~~~i~~~Grl~~~-Kg~~~li~a~~~l~~--~~~~l~i~G~g~-~~~~~~~~~l~~~~~~~v 358 (510)
+..+++++ + ++.++++++||+.+. ||++.+++|+.++.+ +++++++ |.|+ ..+.+.++++.... .+|
T Consensus 195 ---~~~~~~~~--~--~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~~-~~v 265 (375)
T 3beo_A 195 ---SHPVLEKL--G--NNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMNPVVRETANDILGDY-GRI 265 (375)
T ss_dssp ---CCHHHHTT--T--TSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSCHHHHHHHHHHHTTC-TTE
T ss_pred ---hHHHHHhc--c--CCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCCHHHHHHHHHHhhcc-CCE
Confidence 11233333 2 244678899999875 999999999999875 5788655 6554 33455666653222 468
Q ss_pred EEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEec-CCCccceEEcCCceeEeccccccCCCCCccC
Q 010448 359 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVD 437 (510)
Q Consensus 359 ~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~-~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d 437 (510)
.+.+..+..++..+|+.||++|+|| |.+++|||+||+|||+++ .||.+|++.++ +|+++ ++ |
T Consensus 266 ~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v----------~~-d 328 (375)
T 3beo_A 266 HLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLA----------GT-D 328 (375)
T ss_dssp EEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEEC----------CS-C
T ss_pred EEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEc----------CC-C
Confidence 8888777778889999999999999 777999999999999996 49999998877 99987 65 9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHH--hhccCChHHHHHHHHHHHH
Q 010448 438 VAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLL 483 (510)
Q Consensus 438 ~~~la~~i~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y~ 483 (510)
+++++++|.+++++ ++.+.++++++ ..+.|+|+++++.+.++++
T Consensus 329 ~~~la~~i~~ll~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 329 EETIFSLADELLSD--KEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--hHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 99999999999998 67777777665 3467999999998887653
No 23
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.95 E-value=5.6e-27 Score=237.07 Aligned_cols=283 Identities=14% Similarity=0.065 Sum_probs=197.7
Q ss_pred CCCeEEEeccc-hhhhHHHHHHHhhcCCCCCCCCcEEEEecCCCcccccCccchhhcCCChhhhcccccccCCCCCCCCC
Q 010448 126 GEDVVFVANDW-HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 204 (510)
Q Consensus 126 ~pD~iih~h~~-~~~~~~~~l~~~~~~~~~~~~~~~V~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (510)
+|| +||+|.. ...+.+.++.+. .++|+|++.|+......+. ..
T Consensus 86 ~pD-vv~~~~~~~~~~~~~~~a~~-------~~ip~v~~~~~~~~~~~~~----------------------------~~ 129 (384)
T 1vgv_A 86 KPD-VVLVHGDTTTTLATSLAAFY-------QRIPVGHVEAGLRTGDLYS----------------------------PW 129 (384)
T ss_dssp CCS-EEEEETTCHHHHHHHHHHHT-------TTCCEEEESCCCCCSCTTS----------------------------ST
T ss_pred CCC-EEEEeCCchHHHHHHHHHHH-------HCCCEEEEecccccccccC----------------------------CC
Confidence 599 9999864 444443343332 4899999999642111000 00
Q ss_pred cchHHHHH-HHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCC-CCCCCCCCCccccccCCCcCChhhch
Q 010448 205 KINWMKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAK 282 (510)
Q Consensus 205 ~~~~~~~~-~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngv-d~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (510)
.....+.. .+.+|.++++|+..++.+.+ .|++.+ ++.+++||+ |...+.+... ...
T Consensus 130 ~~~~~~~~~~~~~d~ii~~s~~~~~~l~~---~g~~~~------~i~vi~n~~~d~~~~~~~~~-------------~~~ 187 (384)
T 1vgv_A 130 PEEANRTLTGHLAMYHFSPTETSRQNLLR---ENVADS------RIFITGNTVIDALLWVRDQV-------------MSS 187 (384)
T ss_dssp THHHHHHHHHTTCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHHHHT-------------TTC
T ss_pred chHhhHHHHHhhccEEEcCcHHHHHHHHH---cCCChh------hEEEeCChHHHHHHhhhhcc-------------ccc
Confidence 01122333 45599999999999999886 576644 799999995 4211110000 000
Q ss_pred HHHHHHHHHHhC-CCCCCCCcEEEEecCcccc-cChhhHHHHHHhhhh--CCcEEEEE-ecCChhHHHHHHHHHHHCCCc
Q 010448 283 PLLKEALQAEVG-LPVDRNIPVIGFIGRLEEQ-KGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEK 357 (510)
Q Consensus 283 ~~~~~~~~~~~g-~~~~~~~~~i~~~Grl~~~-Kg~~~li~a~~~l~~--~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~ 357 (510)
...+..+++++| ++. ++.++++++||+.+. ||++.+++|+.++.+ ++++++++ |++ +.+.+.++++.... .+
T Consensus 188 ~~~~~~~~~~~~~~~~-~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~-~~~~~~l~~~~~~~-~~ 264 (384)
T 1vgv_A 188 DKLRSELAANYPFIDP-DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLN-PNVREPVNRILGHV-KN 264 (384)
T ss_dssp HHHHHHHHTTCTTCCT-TSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBC-HHHHHHHHHHHTTC-TT
T ss_pred hhhhHHHHHhccccCC-CCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCC-HHHHHHHHHHhhcC-CC
Confidence 001234566677 642 234678899999876 999999999999876 58898886 433 33566666664332 46
Q ss_pred eEEeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecC-CCccceEEcCCceeEeccccccCCCCCcc
Q 010448 358 ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPV 436 (510)
Q Consensus 358 v~~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~-gg~~e~v~~~~~G~l~~~~~~~~~~~~~~ 436 (510)
|.+.+..+.+++..+|+.||++|+|| |.+++|||+||+|||+++. ||..|++.++ +|+++ ++
T Consensus 265 v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv----------~~- 327 (384)
T 1vgv_A 265 VILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLV----------GT- 327 (384)
T ss_dssp EEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEE----------CS-
T ss_pred EEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEe----------CC-
Confidence 88877666677888999999999999 4448999999999999986 9999998887 99998 66
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHH--hhccCChHHHHHHHHHHHHHHHHc
Q 010448 437 DVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLNLEVA 488 (510)
Q Consensus 437 d~~~la~~i~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y~~l~~~ 488 (510)
|+++++++|.++++| ++.+.++++++ ....|+|+++++.+.++|.++.+.
T Consensus 328 d~~~la~~i~~ll~d--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (384)
T 1vgv_A 328 DKQRIVEEVTRLLKD--ENEYQAMSRAHNPYGDGQACSRILEALKNNRISLGSH 379 (384)
T ss_dssp SHHHHHHHHHHHHHC--HHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCCCC---
T ss_pred CHHHHHHHHHHHHhC--hHHHhhhhhccCCCcCCCHHHHHHHHHHHHHHhhccc
Confidence 999999999999998 67777777665 346799999999998888776643
No 24
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.94 E-value=9.7e-26 Score=240.12 Aligned_cols=213 Identities=14% Similarity=0.078 Sum_probs=166.7
Q ss_pred hccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHHhC
Q 010448 215 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 294 (510)
Q Consensus 215 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 294 (510)
.+|.++++|+...+ ++ .++.+|||..+.....+... ....|+++|
T Consensus 328 ~~d~~i~~s~~~~~-------~~---------~~i~~ipn~~~~~~~~~~~~-------------------~~~~r~~~~ 372 (568)
T 2vsy_A 328 LGDAFALPPALEPF-------YS---------EHVLRLQGAFQPSDTSRVVA-------------------EPPSRTQCG 372 (568)
T ss_dssp EECTTTSCTTTGGG-------CS---------SEEEECSSCSCCCCTTCCCC-------------------CCCCTGGGT
T ss_pred EECCCcCCcccccC-------Cc---------ceeEcCCCcCCCCCCCCCCC-------------------CCCCccccC
Confidence 48999999986543 11 17999999544322111110 112355677
Q ss_pred CCCCCCCcEEEEecCcccccChhhHHHHHHhhhh--CCcEEEEEe-cCChhHHHHHHHHHHHCC---CceEEeccCCHHH
Q 010448 295 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLG-TGKKPMEKQLEQLEILYP---EKARGVAKFNIPL 368 (510)
Q Consensus 295 ~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~~~~l~i~G-~g~~~~~~~~~~l~~~~~---~~v~~~~~~~~~~ 368 (510)
++. + .+++++||+.+ ||++.+++++.++.+ ++++|+|+| +|+ ..+.+++++.+.+ ++|.+.+..+.++
T Consensus 373 ~~~--~-~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~--~~~~l~~~~~~~~l~~~~v~~~g~~~~~~ 446 (568)
T 2vsy_A 373 LPE--Q-GVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGE--ADARLRAFAHAQGVDAQRLVFMPKLPHPQ 446 (568)
T ss_dssp CCT--T-SCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTT--HHHHHHHHHHHTTCCGGGEEEECCCCHHH
T ss_pred CCC--C-CEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHH--HHHHHHHHHHHcCCChhHEEeeCCCCHHH
Confidence 763 2 35669999999 999999999999865 789999999 776 6677777777654 4699999988888
Q ss_pred HHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEE-------ecCC-------CccceEEcCCceeEeccccccCCCCC
Q 010448 369 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV-------ASTG-------GLVDTVEEGFTGFQMGSFSVDCEAVD 434 (510)
Q Consensus 369 ~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~-------s~~g-------g~~e~v~~~~~G~l~~~~~~~~~~~~ 434 (510)
+..+|+.+|++|+||.+ ++|++++|||+||+|||+ |+.| |++|++.
T Consensus 447 ~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~------------------- 506 (568)
T 2vsy_A 447 YLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV------------------- 506 (568)
T ss_dssp HHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBC-------------------
T ss_pred HHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhc-------------------
Confidence 88999999999999999 999999999999999999 9998 8777552
Q ss_pred ccCHHHHHHHHHHHHHhhCHHHHHHHHHHH---h--hccCChHHHHHHHHHHHHHHHHcCCC
Q 010448 435 PVDVAAVSTTVRRALATYGTQALAEMMKNG---M--AQDLSWKGPAKKWEETLLNLEVAGSE 491 (510)
Q Consensus 435 ~~d~~~la~~i~~ll~~~~~~~~~~~~~~~---~--~~~fs~~~~~~~~~~~y~~l~~~~~~ 491 (510)
+|+++++++|.+++++ ++.+.++++++ + .+.|||+.+++++.++|++++++...
T Consensus 507 -~~~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~ 565 (568)
T 2vsy_A 507 -ADDAAFVAKAVALASD--PAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRHGW 565 (568)
T ss_dssp -SSHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHTTTC
T ss_pred -CCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3889999999999998 55555665554 3 47899999999999999999987543
No 25
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.93 E-value=1.3e-25 Score=236.67 Aligned_cols=348 Identities=14% Similarity=0.139 Sum_probs=247.4
Q ss_pred CCCeEEEeccchhhhHHH-HHHHhhcCCCC-----C--CCCcEEEEecCCCcccc--cCccchhh-c--------CCChh
Q 010448 126 GEDVVFVANDWHTSLIPC-YLKTMYKPKGM-----Y--KSAKVVFCIHNIAYQGR--FAFEDFGL-L--------NLPAQ 186 (510)
Q Consensus 126 ~pD~iih~h~~~~~~~~~-~l~~~~~~~~~-----~--~~~~~V~tiH~~~~~~~--~~~~~~~~-~--------~~~~~ 186 (510)
+|| +||+||||+++++. +++...-..+. + .+..++||+|++.+++. ||...+.. + +++..
T Consensus 289 ~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~ 367 (796)
T 2c4m_A 289 EFH-SVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRR 367 (796)
T ss_dssp HHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCe-EEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHHHHHhHHHHHHHcCcCHH
Confidence 378 99999999999888 55443211111 0 25789999999999886 66655422 1 11222
Q ss_pred hhcccccccC------CCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCC
Q 010448 187 FKSSFDFIDG------YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQE 260 (510)
Q Consensus 187 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~ 260 (510)
++..+....+ .........+++.+.++..|+.|.+||+.+.+.+++.. ++ ..-. ..+.++.-|.|||++..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~-f~-~~~~-~~p~kf~~iTNGI~~rr 444 (796)
T 2c4m_A 368 FRLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAET-LA-DWYA-LWPEKFNNKTNGVTPRR 444 (796)
T ss_dssp HHHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTT-TH-HHHH-HCGGGEEECCCCBCTCC
T ss_pred HHHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhh-hh-hHHH-cCccccccccCCcchHH
Confidence 1110000000 00000123678899999999999999999999998521 11 1000 11347999999999999
Q ss_pred C----CCCCccccccCCC-----------------cCC------hhhchHHHHHH----HHHHhCCCCCCCCcEEEEecC
Q 010448 261 W----NPLTDKYIGVKYD-----------------AST------VMDAKPLLKEA----LQAEVGLPVDRNIPVIGFIGR 309 (510)
Q Consensus 261 ~----~~~~~~~~~~~~~-----------------~~~------~~~~~~~~~~~----~~~~~g~~~~~~~~~i~~~Gr 309 (510)
| +|..+..+...++ .++ +++.|..+|.. +++++|++.+++.++++++.|
T Consensus 445 Wl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkR 524 (796)
T 2c4m_A 445 WLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKR 524 (796)
T ss_dssp CCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECC
T ss_pred hhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeec
Confidence 9 5554433433333 222 34566667777 588999998888999999999
Q ss_pred cccccChhh-HHHHHHhhhh---------CCcEEEEEecCChhHHHH------HHHHHH------HCCC--ceEEeccCC
Q 010448 310 LEEQKGSDI-LAAAIPHFIK---------ENVQIIVLGTGKKPMEKQ------LEQLEI------LYPE--KARGVAKFN 365 (510)
Q Consensus 310 l~~~Kg~~~-li~a~~~l~~---------~~~~l~i~G~g~~~~~~~------~~~l~~------~~~~--~v~~~~~~~ 365 (510)
+.++||+++ ++.++.++.+ .+++|++.|++.+.+... +.+++. +.++ +|.+...|+
T Consensus 525 lheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~ 604 (796)
T 2c4m_A 525 LHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYN 604 (796)
T ss_dssp CCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCC
T ss_pred chhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCC
Confidence 999999999 8888777753 368999999987544443 777776 5677 899999999
Q ss_pred HHHHHHHHHhCcEEEeCCC--CCCccHHHHHHHHhCCCcEEecCCCccceEEc--CCceeEeccccccCCCCCccCHHHH
Q 010448 366 IPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDCEAVDPVDVAAV 441 (510)
Q Consensus 366 ~~~~~~~~~~adv~v~ps~--~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~--~~~G~l~~~~~~~~~~~~~~d~~~l 441 (510)
......++++||++++||+ +|+||++-+-+|..|++.|++--|...|+.++ .+|||+|+. ...++.++
T Consensus 605 vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~--------~~~ev~~l 676 (796)
T 2c4m_A 605 VSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGA--------RVEELPAL 676 (796)
T ss_dssp HHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSEEESC--------CTTTHHHH
T ss_pred HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcEEEecC--------chhhHHHH
Confidence 9999999999999999999 89999999999999999999988888887654 469999941 33677777
Q ss_pred HHHHHHHHHhhC-HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 010448 442 STTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 487 (510)
Q Consensus 442 a~~i~~ll~~~~-~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 487 (510)
... ....+-+. ...++++..+.....|||... .+|..+|..++.
T Consensus 677 ~~~-y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 677 RES-YKPYELYETVPGLKRALDALDNGTLNDNNS-GLFYDLKHSLIH 721 (796)
T ss_dssp HHT-CCHHHHHHHSTTHHHHHHTTTSSSSCCTTC-CHHHHHHHHHHS
T ss_pred HHh-hChHHHhhcCHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHh
Confidence 664 22222111 124666666667789999887 789999999874
No 26
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=2.6e-25 Score=197.45 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=132.1
Q ss_pred CcEEEEecCcccccChhhHHHHHHhhhh-CCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEE
Q 010448 301 IPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 379 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~~~li~a~~~l~~-~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~ 379 (510)
+++|+|+||+.+.||++.+++|+..+++ ++++|+|+|+|+ ..+.++++..+++.++.+ +..+.+++..+|+.||++
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~ 78 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGP--DEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLY 78 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCST--THHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCc--cHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEE
Confidence 3799999999999999999999999964 689999999987 456777777777666777 777888889999999999
Q ss_pred EeCCCCCCccHHHHHHHHhCC-CcEE-ecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhhCHHHH
Q 010448 380 LIPSRFEPCGLIQLHAMRYGT-VPIV-ASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL 457 (510)
Q Consensus 380 v~ps~~E~~g~~~~Eama~G~-Pvv~-s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~~~~~ 457 (510)
++||..|+||++++|||+||+ |||+ ++.|+..+++.++.+ ++ ++.|+++++++|.+++++ ++.+
T Consensus 79 v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~----------~~~~~~~l~~~i~~l~~~--~~~~ 144 (166)
T 3qhp_A 79 VHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LF----------EPNNAKDLSAKIDWWLEN--KLER 144 (166)
T ss_dssp EECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EE----------CTTCHHHHHHHHHHHHHC--HHHH
T ss_pred EECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EE----------cCCCHHHHHHHHHHHHhC--HHHH
Confidence 999999999999999999998 9999 568999999988655 44 889999999999999998 6666
Q ss_pred HHHHHHH--hhccCChHHHHHH
Q 010448 458 AEMMKNG--MAQDLSWKGPAKK 477 (510)
Q Consensus 458 ~~~~~~~--~~~~fs~~~~~~~ 477 (510)
.++++++ ..++|||+.++++
T Consensus 145 ~~~~~~~~~~~~~~s~~~~~~~ 166 (166)
T 3qhp_A 145 ERMQNEYAKSALNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHCChhhhhcC
Confidence 6666555 2478999998764
No 27
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.93 E-value=2.3e-25 Score=234.69 Aligned_cols=340 Identities=15% Similarity=0.180 Sum_probs=243.7
Q ss_pred CCCeEEEeccchhhhHHH-HHHHhhcCCCC-----C--CCCcEEEEecCCCcccc--cCccchhh-c--------CCChh
Q 010448 126 GEDVVFVANDWHTSLIPC-YLKTMYKPKGM-----Y--KSAKVVFCIHNIAYQGR--FAFEDFGL-L--------NLPAQ 186 (510)
Q Consensus 126 ~pD~iih~h~~~~~~~~~-~l~~~~~~~~~-----~--~~~~~V~tiH~~~~~~~--~~~~~~~~-~--------~~~~~ 186 (510)
+|| +||+||||+++++. +++.+....+. + .+..++||+|++.+++. ||...+.. + .++.+
T Consensus 299 ~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~ 377 (796)
T 1l5w_A 299 DYE-VIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTR 377 (796)
T ss_dssp HHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHH
T ss_pred Ccc-EEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHH
Confidence 378 99999999999888 55443211111 0 37889999999999886 66554421 1 01111
Q ss_pred hhcc-----------cccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCC
Q 010448 187 FKSS-----------FDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG 255 (510)
Q Consensus 187 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpng 255 (510)
+... +... +. .....+++.+.++..|+.|.+||+.+.+.+++.. ++ ..-. +.+.++.-|.||
T Consensus 378 f~~~~~~~~~~~~~~~~~~-~i---~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~-f~-~~~~-~~p~k~~~iTNG 450 (796)
T 1l5w_A 378 FKTLVEKTWPGDEKVWAKL-AV---VHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDL-FP-EYHQ-LWPNKFHNVTNG 450 (796)
T ss_dssp HHHHHHHHSTTCHHHHHHH-CS---EETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTT-SH-HHHH-HCGGGEEECCCC
T ss_pred HHHHHHHhcCCcHHHHhhh-hc---ccCCcccHHHHHHHhcCccccccHHHHHHHHhHH-hh-HHHH-hCccccCCCcCC
Confidence 1100 0000 00 0123678899999999999999999999997521 11 1001 113479999999
Q ss_pred CCCCCC----CCCCccccccCCC----------------cCC------hhhchHHHHHH----HHHHhCCCCCCCCcEEE
Q 010448 256 MDVQEW----NPLTDKYIGVKYD----------------AST------VMDAKPLLKEA----LQAEVGLPVDRNIPVIG 305 (510)
Q Consensus 256 vd~~~~----~~~~~~~~~~~~~----------------~~~------~~~~~~~~~~~----~~~~~g~~~~~~~~~i~ 305 (510)
|++..| +|..+..+...++ .++ +++.|..+|.. +++++|++.+++.++++
T Consensus 451 I~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~ 530 (796)
T 1l5w_A 451 ITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDI 530 (796)
T ss_dssp BCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEE
T ss_pred CcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEe
Confidence 999888 5554444444444 222 34566667776 58889999888899999
Q ss_pred EecCcccccChhh-HHHHHHhhhh---------CCcEEEEEecCChhHHHH------HHHHHH------HCCC--ceEEe
Q 010448 306 FIGRLEEQKGSDI-LAAAIPHFIK---------ENVQIIVLGTGKKPMEKQ------LEQLEI------LYPE--KARGV 361 (510)
Q Consensus 306 ~~Grl~~~Kg~~~-li~a~~~l~~---------~~~~l~i~G~g~~~~~~~------~~~l~~------~~~~--~v~~~ 361 (510)
++.|+.++||+++ ++.++.++.+ .+++|++.|++.+.+... +.+++. +.++ +|.+.
T Consensus 531 ~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl 610 (796)
T 1l5w_A 531 QIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFL 610 (796)
T ss_dssp EESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEEC
T ss_pred eeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEE
Confidence 9999999999999 8888877765 478999999987544443 677766 5666 79999
Q ss_pred ccCCHHHHHHHHHhCcEEEeCCC--CCCccHHHHHHHHhCCCcEEecCCCccceEEc--CCceeEeccccccCCCCCccC
Q 010448 362 AKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDCEAVDPVD 437 (510)
Q Consensus 362 ~~~~~~~~~~~~~~adv~v~ps~--~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~--~~~G~l~~~~~~~~~~~~~~d 437 (510)
..|+......++++||++++||+ +|+||++-+-+|..|++.|++--|...|+.++ .+|||+|+ . +
T Consensus 611 ~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG----------~-~ 679 (796)
T 1l5w_A 611 PDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFG----------H-T 679 (796)
T ss_dssp SSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECS----------C-C
T ss_pred CCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcEEEec----------C-C
Confidence 99999999999999999999999 89999999999999999999988888887654 46999983 3 5
Q ss_pred HHHHH---HHHH---HHHHhhCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 010448 438 VAAVS---TTVR---RALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 487 (510)
Q Consensus 438 ~~~la---~~i~---~ll~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 487 (510)
++++. .... .+..+ ++ .++++..+.....|||... ..|..+|..++.
T Consensus 680 ~~ev~~l~~~~y~a~~~y~~-~~-~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 680 VEQVKAILAKGYDPVKWRKK-DK-VLDAVLKELESGKYSDGDK-HAFDQMLHSIGK 732 (796)
T ss_dssp HHHHHHHHHHCCCHHHHHHH-CH-HHHHHHHHHHHTTTTTTCT-TTTHHHHHHTST
T ss_pred HHHHHHHHHcccCHHHHhhc-CH-HHHHHHHHHHcCCCCCCcH-HHHHHHHHHHhc
Confidence 55555 3221 12222 13 5666667777789999885 789999998864
No 28
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.91 E-value=1.5e-23 Score=221.69 Aligned_cols=341 Identities=16% Similarity=0.175 Sum_probs=238.4
Q ss_pred CCeEEEeccchhhhHHH-HHHHhhcCCCC-----C--CCCcEEEEecCCCcccc--cCccchhh-c--------CCChhh
Q 010448 127 EDVVFVANDWHTSLIPC-YLKTMYKPKGM-----Y--KSAKVVFCIHNIAYQGR--FAFEDFGL-L--------NLPAQF 187 (510)
Q Consensus 127 pD~iih~h~~~~~~~~~-~l~~~~~~~~~-----~--~~~~~V~tiH~~~~~~~--~~~~~~~~-~--------~~~~~~ 187 (510)
|| +||+||||+++++. +++.+.-..+. + .+..++||+|++.+++. ||...+.. + .++..+
T Consensus 321 p~-viHlNDtHpal~i~ElmR~l~d~~~l~~d~A~~i~~~~~vfT~HTl~~eglE~wp~~l~~~lLPr~~~ii~~in~~f 399 (824)
T 2gj4_A 321 KV-AIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRF 399 (824)
T ss_dssp HE-EEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHHHHHHHEEEECCCCCGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred Cc-EEEccCCchHhHHHHHHHHHHHhcCCCHHHHHHHhcCcEEEEeCCChHHHhhhchHHHHHHhCchHHHHHHHHHHHH
Confidence 78 99999999999888 55543311110 0 13459999999999998 87665532 2 011111
Q ss_pred hcc-----------cccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCC
Q 010448 188 KSS-----------FDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM 256 (510)
Q Consensus 188 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngv 256 (510)
... +........- ....+++.+.++..|+.|.+||+-+.+.+++.. ++ ..-. ..+.++.-|.|||
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~-f~-~~~~-~~p~k~~~iTNGI 475 (824)
T 2gj4_A 400 LNRVAAAFPGDVDRLRRMSLVEEG-AVKRINMAHLCIAGSHAVNGVARIHSEILKKTI-FK-DFYE-LEPHKFQNKTNGI 475 (824)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEECS-SSCEEEHHHHHHHTCSCEEESSHHHHHHHHHTT-TH-HHHH-HCGGGEEECCCCB
T ss_pred HHHHHHHcCCcHHHHHhhhhhhhc-CCCcccHHHHHHHhcCceeeEcHHHHHHHhhHH-hH-HHHH-cChhhcccccCCc
Confidence 110 0000010000 124678899999999999999999999987421 11 0000 1134899999999
Q ss_pred CCCCC----CCCCccccccC-----------------CCc-CChh----hchHHHHHH----HHHHhCCCCCCCCcEEEE
Q 010448 257 DVQEW----NPLTDKYIGVK-----------------YDA-STVM----DAKPLLKEA----LQAEVGLPVDRNIPVIGF 306 (510)
Q Consensus 257 d~~~~----~~~~~~~~~~~-----------------~~~-~~~~----~~~~~~~~~----~~~~~g~~~~~~~~~i~~ 306 (510)
++..| +|..+..+..+ |.. ..+. +.|..+|.. +++++|++.+++.+++++
T Consensus 476 ~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~ 555 (824)
T 2gj4_A 476 TPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 555 (824)
T ss_dssp CTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEE
T ss_pred ChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEee
Confidence 99999 55433233222 433 2231 345556665 788899998888999999
Q ss_pred ecCcccccChhhH-HHHHHhhh---h-C-----CcEEEEEecCChhHHHH------HHHHHHHC------CC--ceEEec
Q 010448 307 IGRLEEQKGSDIL-AAAIPHFI---K-E-----NVQIIVLGTGKKPMEKQ------LEQLEILY------PE--KARGVA 362 (510)
Q Consensus 307 ~Grl~~~Kg~~~l-i~a~~~l~---~-~-----~~~l~i~G~g~~~~~~~------~~~l~~~~------~~--~v~~~~ 362 (510)
+.|+.++||++++ +..+.++. + + +++|++.|++.+.+... +.+++... ++ +|.+..
T Consensus 556 vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~ 635 (824)
T 2gj4_A 556 VKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLE 635 (824)
T ss_dssp ESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEET
T ss_pred eecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEEC
Confidence 9999999999998 78877774 2 2 57999999987544433 66666643 45 799999
Q ss_pred cCCHHHHHHHHHhCcEEEeCCC--CCCccHHHHHHHHhCCCcEEecCCCccceEE--cCCceeEeccccccCCCCCccCH
Q 010448 363 KFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDV 438 (510)
Q Consensus 363 ~~~~~~~~~~~~~adv~v~ps~--~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~--~~~~G~l~~~~~~~~~~~~~~d~ 438 (510)
.|+......++++||++++||+ +|+||++-+-+|..|++.|++--|...|+.+ ..+|||+|+ .. +
T Consensus 636 nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG----------~~-~ 704 (824)
T 2gj4_A 636 NYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG----------MR-V 704 (824)
T ss_dssp TCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECS----------CC-H
T ss_pred CCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeC----------Cc-H
Confidence 9999999999999999999999 8999999999999999999998888777754 356999983 22 5
Q ss_pred HHHHHHHH-------HHHHhhCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 010448 439 AAVSTTVR-------RALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 487 (510)
Q Consensus 439 ~~la~~i~-------~ll~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 487 (510)
+++ .++. .+.+. ...+++...+.+...|+|... .+|..+|..++.
T Consensus 705 ~ev-~~l~~~~~~a~~~Y~~--~~~l~~v~d~i~~g~fs~~~~-~~y~~ly~~l~~ 756 (824)
T 2gj4_A 705 EDV-DRLDQRGYNAQEYYDR--IPELRQIIEQLSSGFFSPKQP-DLFKDIVNMLMH 756 (824)
T ss_dssp HHH-HHHHHHCCCHHHHHHH--CHHHHHHHHHHHHTTTCTTST-TTTHHHHHHHHH
T ss_pred HHH-HHHHHcCCCHHHHhcC--CHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHc
Confidence 555 4331 22332 245556666666788999887 789999998874
No 29
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.90 E-value=3.4e-22 Score=201.44 Aligned_cols=220 Identities=13% Similarity=0.020 Sum_probs=163.2
Q ss_pred HHHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCC-CCCCCCCCCccccccCCCcCChhhchHHHHHHHH
Q 010448 212 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 290 (510)
Q Consensus 212 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngv-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (510)
..+.+|.++++|+..++.+.+ .|++.+ ++.+++|++ |...+.+ .+..++
T Consensus 143 ~~~~~~~~~~~s~~~~~~l~~---~g~~~~------ki~vi~n~~~d~~~~~~---------------------~~~~~~ 192 (376)
T 1v4v_A 143 TDVLTDLDFAPTPLAKANLLK---EGKREE------GILVTGQTGVDAVLLAA---------------------KLGRLP 192 (376)
T ss_dssp HHHHCSEEEESSHHHHHHHHT---TTCCGG------GEEECCCHHHHHHHHHH---------------------HHCCCC
T ss_pred HHHHhceeeCCCHHHHHHHHH---cCCCcc------eEEEECCchHHHHhhhh---------------------hhhHHH
Confidence 445799999999999999986 576654 789999964 3211100 000011
Q ss_pred HHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhh--CCcEEEEE-ecCChhHHHHHHHHHHHCCCceEEeccCCHH
Q 010448 291 AEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIP 367 (510)
Q Consensus 291 ~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~ 367 (510)
+++ + ++.++++++||+...||++.+++|+.++.+ ++++++++ |+++ ...+.++++... ..+|.+.+.....
T Consensus 193 ~~~--~--~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~-~~~~~l~~~~~~-~~~v~~~g~~g~~ 266 (376)
T 1v4v_A 193 EGL--P--EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNP-VVREAVFPVLKG-VRNFVLLDPLEYG 266 (376)
T ss_dssp TTC--C--SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCH-HHHHHHHHHHTT-CTTEEEECCCCHH
T ss_pred Hhc--C--CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCH-HHHHHHHHHhcc-CCCEEEECCCCHH
Confidence 111 1 234677889999888899999999999865 58888886 6554 345666666533 2368888766666
Q ss_pred HHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEe-cCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHH
Q 010448 368 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 446 (510)
Q Consensus 368 ~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s-~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~ 446 (510)
++..+|+.||++|.|| .|+ ++|||+||+|||++ +.++..+++.+ ++|+++ + .|+++|+++|.
T Consensus 267 ~~~~~~~~ad~~v~~S----~g~-~lEA~a~G~PvI~~~~~~~~~~~~~~-g~g~lv----------~-~d~~~la~~i~ 329 (376)
T 1v4v_A 267 SMAALMRASLLLVTDS----GGL-QEEGAALGVPVVVLRNVTERPEGLKA-GILKLA----------G-TDPEGVYRVVK 329 (376)
T ss_dssp HHHHHHHTEEEEEESC----HHH-HHHHHHTTCCEEECSSSCSCHHHHHH-TSEEEC----------C-SCHHHHHHHHH
T ss_pred HHHHHHHhCcEEEECC----cCH-HHHHHHcCCCEEeccCCCcchhhhcC-CceEEC----------C-CCHHHHHHHHH
Confidence 7778999999999999 244 88999999999987 57888888755 489886 4 59999999999
Q ss_pred HHHHhhCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHc
Q 010448 447 RALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVA 488 (510)
Q Consensus 447 ~ll~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~ 488 (510)
++++| ++.+.+++++ ...|++...++++.+.+.++++.
T Consensus 330 ~ll~d--~~~~~~~~~~--~~~~~~~~~~~~i~~~i~~~~~~ 367 (376)
T 1v4v_A 330 GLLEN--PEELSRMRKA--KNPYGDGKAGLMVARGVAWRLGL 367 (376)
T ss_dssp HHHTC--HHHHHHHHHS--CCSSCCSCHHHHHHHHHHHHTTS
T ss_pred HHHhC--hHhhhhhccc--CCCCCCChHHHHHHHHHHHHhcc
Confidence 99997 6777777753 46788888889999988888753
No 30
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.88 E-value=4.3e-22 Score=178.75 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=125.8
Q ss_pred CCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCCh--hHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhC
Q 010448 299 RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK--PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 376 (510)
Q Consensus 299 ~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~--~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~a 376 (510)
.++++|+|+|++.+.||++.+++++.++ ++++|+|+|.|+. .+.+.++++.....++|.+.+.++.+++..+|+.|
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 98 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRC 98 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHC
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 3568999999999999999999999998 6899999999873 45555553334455679999999999899999999
Q ss_pred cEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhhC
Q 010448 377 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG 453 (510)
Q Consensus 377 dv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~ 453 (510)
|++++||..|++|++++|||+||+|||+++.++..+++.++.+|+++ +.|+++++++|.+++++++
T Consensus 99 di~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-----------~~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 99 KGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-----------NADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp SEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-----------CSCHHHHHHHHHHHHHCTT
T ss_pred CEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-----------CCCHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999974 6899999999999999843
No 31
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.86 E-value=8.8e-21 Score=190.82 Aligned_cols=199 Identities=13% Similarity=0.033 Sum_probs=143.5
Q ss_pred HHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 208 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 208 ~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+++..++.+|.++++|+..++.+.+ .|++ ++.+++|+. |.+....
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~l~~---~g~~--------ki~vi~n~~----f~~~~~~-------------------- 190 (374)
T 2xci_A 146 IEKILSKKFDLIIMRTQEDVEKFKT---FGAK--------RVFSCGNLK----FICQKGK-------------------- 190 (374)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHT---TTCC--------SEEECCCGG----GCCCCCS--------------------
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHH---cCCC--------eEEEcCCCc----cCCCcCh--------------------
Confidence 4577788999999999999999986 4654 688999973 2221100
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhh--CCcEEEEEecCChhHHHHHHHHHHHCCC---------
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPE--------- 356 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~~~~l~i~G~g~~~~~~~~~~l~~~~~~--------- 356 (510)
++ .+ ..+++++.|+ ..||++.+++|+.++.+ ++++|+|+|+|++. .+.+++++.+.+.
T Consensus 191 --~~--~l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~~-~~~l~~~~~~~gl~~~~~~~~~ 259 (374)
T 2xci_A 191 --GI--KL----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIEN-AKIFEKKARDFGFKTSFFENLE 259 (374)
T ss_dssp --CC--CC----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGGG-HHHHHHHHHHTTCCEEETTCCC
T ss_pred --hh--hh----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHHH-HHHHHHHHHHCCCceEEecCCC
Confidence 00 01 1256777775 46899999999999975 58999999988732 2345666655542
Q ss_pred -ceEEeccCCHHHHHHHHHhCcEEEeCCCC-CCccHHHHHHHHhCCCcEEe-cCCCccceEEcC-CceeEeccccccCCC
Q 010448 357 -KARGVAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEG-FTGFQMGSFSVDCEA 432 (510)
Q Consensus 357 -~v~~~~~~~~~~~~~~~~~adv~v~ps~~-E~~g~~~~Eama~G~Pvv~s-~~gg~~e~v~~~-~~G~l~~~~~~~~~~ 432 (510)
++.+ .+.. +++..+|+.||++++||.+ |++|++++||||||+|||++ +.++.+|++.+. .+|+++
T Consensus 260 ~~v~~-~~~~-~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~--------- 328 (374)
T 2xci_A 260 GDVIL-VDRF-GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGF--------- 328 (374)
T ss_dssp SSEEE-CCSS-SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEE---------
T ss_pred CcEEE-ECCH-HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEE---------
Confidence 2332 2222 4456799999998888655 77899999999999999975 789999988763 478877
Q ss_pred CCccCHHHHHHHHHHHHHhhCH-HHHHHHHHHHh
Q 010448 433 VDPVDVAAVSTTVRRALATYGT-QALAEMMKNGM 465 (510)
Q Consensus 433 ~~~~d~~~la~~i~~ll~~~~~-~~~~~~~~~~~ 465 (510)
.++|+++|+++|.++++| +. +.+.+.+++.+
T Consensus 329 -~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~ 360 (374)
T 2xci_A 329 -EVKNETELVTKLTELLSV-KKEIKVEEKSREIK 360 (374)
T ss_dssp -ECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHH
T ss_pred -EeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence 789999999999999997 43 34444444333
No 32
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.85 E-value=3e-20 Score=183.16 Aligned_cols=193 Identities=16% Similarity=0.015 Sum_probs=139.8
Q ss_pred HHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 208 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 208 ~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
.++..++.||.|+++|+.+++.+.+ .|++.. ++.+++++ |.. .+..
T Consensus 126 ~E~~~y~~aD~Ii~~S~~~~~~l~~---~G~~~~------ki~~~~~~-~~~--~~~~---------------------- 171 (339)
T 3rhz_A 126 RTIAYYNKADVVVAPSQKMIDKLRD---FGMNVS------KTVVQGMW-DHP--TQAP---------------------- 171 (339)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHH---TTCCCS------EEEECCSC-CCC--CCCC----------------------
T ss_pred HHHHHHHHCCEEEECCHHHHHHHHH---cCCCcC------ceeecCCC-Ccc--Cccc----------------------
Confidence 5688999999999999999999987 566533 45433332 211 0100
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHH
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIP 367 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~ 367 (510)
.....+.++|+|+|++.....++. + .++++|+|+|+|++. .++ +|.+.+.++.+
T Consensus 172 -------~~~~~~~~~i~yaG~l~k~~~L~~-------l-~~~~~f~ivG~G~~~----------~l~-nV~f~G~~~~~ 225 (339)
T 3rhz_A 172 -------MFPAGLKREIHFPGNPERFSFVKE-------W-KYDIPLKVYTWQNVE----------LPQ-NVHKINYRPDE 225 (339)
T ss_dssp -------CCCCEEEEEEEECSCTTTCGGGGG-------C-CCSSCEEEEESCCCC----------CCT-TEEEEECCCHH
T ss_pred -------ccccCCCcEEEEeCCcchhhHHHh-------C-CCCCeEEEEeCCccc----------CcC-CEEEeCCCCHH
Confidence 001124479999999996433322 2 368999999999843 244 79999999999
Q ss_pred HHHHHHHhCcEEEeCCCC-------CCccHHHHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHHH
Q 010448 368 LAHMIIAGADFILIPSRF-------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 440 (510)
Q Consensus 368 ~~~~~~~~adv~v~ps~~-------E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~ 440 (510)
++..+++.+|+.++.... ..+|.+++||||||+|||+++.+++.++++++++|+++ .+.++
T Consensus 226 el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~------------~~~~e 293 (339)
T 3rhz_A 226 QLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIV------------KDVEE 293 (339)
T ss_dssp HHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEE------------SSHHH
T ss_pred HHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEe------------CCHHH
Confidence 999999999998886211 24689999999999999999999999999999999987 36888
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHh--hccCChHHHHH
Q 010448 441 VSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAK 476 (510)
Q Consensus 441 la~~i~~ll~~~~~~~~~~~~~~~~--~~~fs~~~~~~ 476 (510)
++++|..+. ++.+.+|++++. .+++++....+
T Consensus 294 ~~~~i~~l~----~~~~~~m~~na~~~a~~~~~~~f~k 327 (339)
T 3rhz_A 294 AIMKVKNVN----EDEYIELVKNVRSFNPILRKGFFTR 327 (339)
T ss_dssp HHHHHHHCC----HHHHHHHHHHHHHHTHHHHTTHHHH
T ss_pred HHHHHHHhC----HHHHHHHHHHHHHHHHHhhccHHHH
Confidence 998888764 345666766663 34455544433
No 33
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.78 E-value=8.6e-18 Score=170.18 Aligned_cols=228 Identities=14% Similarity=0.068 Sum_probs=156.9
Q ss_pred HHHH-HHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCC-CCCCCCCCCCccccccCCCcCChhhchHHHH
Q 010448 209 MKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 286 (510)
Q Consensus 209 ~~~~-~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpng-vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (510)
.+.. .+.+|.+++.|+..++.+.+ .|++++ ++.++.|. +|...+.+.. .+.....+
T Consensus 159 ~r~~~~~~a~~~~~~se~~~~~l~~---~G~~~~------ki~vvGn~~~d~~~~~~~~-------------~~~~~~~~ 216 (396)
T 3dzc_A 159 NRKLTAALTQYHFAPTDTSRANLLQ---ENYNAE------NIFVTGNTVIDALLAVREK-------------IHTDMDLQ 216 (396)
T ss_dssp HHHHHHHTCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHHHH-------------HHHCHHHH
T ss_pred HHHHHHHhcCEEECCCHHHHHHHHH---cCCCcC------cEEEECCcHHHHHHHhhhh-------------cccchhhH
Confidence 3444 46789999999999999987 687765 78899885 3421111000 00000013
Q ss_pred HHHHHHhC-CCCCCCCcEEEEecCcc-cccChhhHHHHHHhhhh--CCcEEEEE-ecCChhHHHHHHHHHHHCCCceEEe
Q 010448 287 EALQAEVG-LPVDRNIPVIGFIGRLE-EQKGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGV 361 (510)
Q Consensus 287 ~~~~~~~g-~~~~~~~~~i~~~Grl~-~~Kg~~~li~a~~~l~~--~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~v~~~ 361 (510)
..+++++| ++.+ .++++++.+|.. ..|+++.+++|+.++.+ +++++++. |.+ +...+.++++... ..++.+.
T Consensus 217 ~~~r~~lg~l~~~-~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~-~~~~~~l~~~~~~-~~~v~~~ 293 (396)
T 3dzc_A 217 ATLESQFPMLDAS-KKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLN-PNVREPVNKLLKG-VSNIVLI 293 (396)
T ss_dssp HHHHHTCTTCCTT-SEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBC-HHHHHHHHHHTTT-CTTEEEE
T ss_pred HHHHHHhCccCCC-CCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCC-hHHHHHHHHHHcC-CCCEEEe
Confidence 56778888 4422 234455565654 45789999999999876 68998886 544 3355556654322 2368777
Q ss_pred ccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEe-cCCCccceEEcCCceeEeccccccCCCCCccCHHH
Q 010448 362 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 440 (510)
Q Consensus 362 ~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s-~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~ 440 (510)
......+...+|+.||++|.+| | |+ .+|||++|+|||++ +.++..|.+++| +++++ +.|+++
T Consensus 294 ~~lg~~~~~~l~~~ad~vv~~S---G-g~-~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv-----------~~d~~~ 356 (396)
T 3dzc_A 294 EPQQYLPFVYLMDRAHIILTDS---G-GI-QEEAPSLGKPVLVMRETTERPEAVAAG-TVKLV-----------GTNQQQ 356 (396)
T ss_dssp CCCCHHHHHHHHHHCSEEEESC---S-GG-GTTGGGGTCCEEECCSSCSCHHHHHHT-SEEEC-----------TTCHHH
T ss_pred CCCCHHHHHHHHHhcCEEEECC---c-cH-HHHHHHcCCCEEEccCCCcchHHHHcC-ceEEc-----------CCCHHH
Confidence 7776566668999999999998 3 44 38999999999999 688888888776 56765 348999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 010448 441 VSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETL 482 (510)
Q Consensus 441 la~~i~~ll~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y 482 (510)
+++++.+++++ ++.+.+|+++. ..|.....+++..+++
T Consensus 357 l~~ai~~ll~d--~~~~~~m~~~~--~~~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 357 ICDALSLLLTD--PQAYQAMSQAH--NPYGDGKACQRIADIL 394 (396)
T ss_dssp HHHHHHHHHHC--HHHHHHHHTSC--CTTCCSCHHHHHHHHH
T ss_pred HHHHHHHHHcC--HHHHHHHhhcc--CCCcCChHHHHHHHHH
Confidence 99999999998 67777776553 4566666666666554
No 34
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.76 E-value=7.9e-18 Score=171.49 Aligned_cols=160 Identities=16% Similarity=0.070 Sum_probs=119.5
Q ss_pred CCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEE
Q 010448 300 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 379 (510)
Q Consensus 300 ~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~ 379 (510)
...++++.|++. .++.+.+.++++.+.+.+.++++++.+.. ..+.++ ..+.++.+.+..+ ...+|+.||++
T Consensus 242 ~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~l~----~~~~~v~~~~~~~---~~~~l~~ad~~ 312 (412)
T 3otg_A 242 RPLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSL-DVSGLG----EVPANVRLESWVP---QAALLPHVDLV 312 (412)
T ss_dssp SCEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSC-CCTTCC----CCCTTEEEESCCC---HHHHGGGCSEE
T ss_pred CCEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCC-Chhhhc----cCCCcEEEeCCCC---HHHHHhcCcEE
Confidence 346778889986 77888888888777666788877776542 111111 1345687777663 45799999999
Q ss_pred EeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHHHHHhhC
Q 010448 380 LIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALATYG 453 (510)
Q Consensus 380 v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ll~~~~ 453 (510)
|.++ .+.+++|||++|+|+|+...++ ..+.+.+.++|+++ +++ |+++|+++|.++++|
T Consensus 313 v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~----------~~~~~~~~~l~~ai~~ll~~-- 376 (412)
T 3otg_A 313 VHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHL----------LPDNISPDSVSGAAKRLLAE-- 376 (412)
T ss_dssp EESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------CGGGCCHHHHHHHHHHHHHC--
T ss_pred EECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEec----------CcccCCHHHHHHHHHHHHhC--
Confidence 9765 3489999999999999976553 67778888899987 666 899999999999998
Q ss_pred HHHHHHHHHHH--hhccCChHHHHHHHHHHHHH
Q 010448 454 TQALAEMMKNG--MAQDLSWKGPAKKWEETLLN 484 (510)
Q Consensus 454 ~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y~~ 484 (510)
++.+.++++.+ ....++++.+++.+.+++.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 377 ESYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 55555555544 45678999999999888743
No 35
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.76 E-value=3.8e-17 Score=165.64 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=156.6
Q ss_pred HhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCC-CCCCCCCCCCccccccCCCcCChhhchHHHHHHHHHH
Q 010448 214 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 292 (510)
Q Consensus 214 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpng-vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (510)
+.+|.+++.|+..++.+.+ .|++++ ++.++.|. +|...+.+.... +...+++
T Consensus 168 ~~a~~~~~~se~~~~~l~~---~Gi~~~------~i~vvGn~~~D~~~~~~~~~~------------------~~~~~~~ 220 (403)
T 3ot5_A 168 VMADIHFSPTKQAKENLLA---EGKDPA------TIFVTGNTAIDALKTTVQKDY------------------HHPILEN 220 (403)
T ss_dssp HHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHSCTTC------------------CCHHHHS
T ss_pred HhcCEEECCCHHHHHHHHH---cCCCcc------cEEEeCCchHHHHHhhhhhhc------------------chHHHHh
Confidence 4589999999999999987 687765 78999884 553322111000 1122333
Q ss_pred hCCCCCCCCcEEEEecCccc-ccChhhHHHHHHhhhh--CCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHH
Q 010448 293 VGLPVDRNIPVIGFIGRLEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 369 (510)
Q Consensus 293 ~g~~~~~~~~~i~~~Grl~~-~Kg~~~li~a~~~l~~--~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~ 369 (510)
+ + ++.+++++.||... .|+++.+++|+.++.+ +++++++.+..++...+.+++..... .++.+.+.....++
T Consensus 221 l--~--~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~~v~l~~~l~~~~~ 295 (403)
T 3ot5_A 221 L--G--DNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGH-ERIHLIEPLDAIDF 295 (403)
T ss_dssp C--T--TCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHH
T ss_pred c--c--CCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCC-CCEEEeCCCCHHHH
Confidence 3 2 23456667777643 4789999999999875 68998887433334555565543222 36888887777778
Q ss_pred HHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEe-cCCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHH
Q 010448 370 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 448 (510)
Q Consensus 370 ~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s-~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~l 448 (510)
..+|+.||+++.+| |...+||+++|+|+|++ +.++..|.+..| +|+++ . .|++++++++.++
T Consensus 296 ~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv----------~-~d~~~l~~ai~~l 358 (403)
T 3ot5_A 296 HNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLI----------G-TNKENLIKEALDL 358 (403)
T ss_dssp HHHHHHEEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEEC----------C-SCHHHHHHHHHHH
T ss_pred HHHHHhcCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEc----------C-CCHHHHHHHHHHH
Confidence 88999999999887 44459999999999999 678888887655 88886 4 3999999999999
Q ss_pred HHhhCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 010448 449 LATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 487 (510)
Q Consensus 449 l~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 487 (510)
+++ ++.+.+|+++ ...|.....+++..+++.+.+.
T Consensus 359 l~~--~~~~~~m~~~--~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 359 LDN--KESHDKMAQA--ANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHC--HHHHHHHHHS--CCTTCCSCHHHHHHHHHHHHHT
T ss_pred HcC--HHHHHHHHhh--cCcccCCcHHHHHHHHHHHHhC
Confidence 998 6777777654 3446666667777777777664
No 36
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.70 E-value=3.8e-15 Score=149.13 Aligned_cols=161 Identities=12% Similarity=0.039 Sum_probs=105.2
Q ss_pred cEEEEecCcccccChhhHHHHHHhhhh-CCcEEEE-EecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEE
Q 010448 302 PVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 379 (510)
Q Consensus 302 ~~i~~~Grl~~~Kg~~~li~a~~~l~~-~~~~l~i-~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~ 379 (510)
.++++.|+....+..+.+.+++..+.. .+.++++ +|.+. .+ .+.+.....+.++...+.. +++..+|+.||++
T Consensus 182 ~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~--~~-~~~~~~~~~~~~~~v~~f~--~dm~~~l~~aDlv 256 (365)
T 3s2u_A 182 NLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQH--AE-ITAERYRTVAVEADVAPFI--SDMAAAYAWADLV 256 (365)
T ss_dssp EEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTT--HH-HHHHHHHHTTCCCEEESCC--SCHHHHHHHCSEE
T ss_pred EEEEECCcCCccccchhhHHHHHhcccccceEEEEecCccc--cc-cccceecccccccccccch--hhhhhhhccceEE
Confidence 355566788888888888999988864 3555443 44444 32 3344444555555555433 3455799999999
Q ss_pred EeCCCCCCccHHHHHHHHhCCCcEEecCCCc--------cceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHHHH
Q 010448 380 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGL--------VDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 449 (510)
Q Consensus 380 v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~--------~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ll 449 (510)
|.-+ -++++.|+|++|+|+|....+.. .+.+.+.+.|+++ +.. +++.|+++|.+++
T Consensus 257 I~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l----------~~~~~~~~~L~~~i~~ll 322 (365)
T 3s2u_A 257 ICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLL----------PQKSTGAAELAAQLSEVL 322 (365)
T ss_dssp EECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEEC----------CTTTCCHHHHHHHHHHHH
T ss_pred EecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEe----------ecCCCCHHHHHHHHHHHH
Confidence 9643 47899999999999998765432 2345566678876 433 6899999999999
Q ss_pred HhhCHHHHHHHHHHHh--hccCChHHHHHHHHHHHH
Q 010448 450 ATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLL 483 (510)
Q Consensus 450 ~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~ 483 (510)
+| ++.+.+|++++. ......+++++.++++.+
T Consensus 323 ~d--~~~~~~m~~~a~~~~~~~aa~~ia~~i~~lar 356 (365)
T 3s2u_A 323 MH--PETLRSMADQARSLAKPEATRTVVDACLEVAR 356 (365)
T ss_dssp HC--THHHHHHHHHHHHTCCTTHHHHHHHHHHHHC-
T ss_pred CC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence 98 677778887764 233344445555444433
No 37
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.62 E-value=3.5e-15 Score=151.29 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=98.1
Q ss_pred CCcEEEEecCccccc----------ChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHH
Q 010448 300 NIPVIGFIGRLEEQK----------GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 369 (510)
Q Consensus 300 ~~~~i~~~Grl~~~K----------g~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~ 369 (510)
...+++++|++...| .++.+++++..+ ++++++++.+.. .+.+. ..+.++.+.+..+ .
T Consensus 227 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~---~ 294 (398)
T 4fzr_A 227 QPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL---GFEVVVAVSDKL--AQTLQ----PLPEGVLAAGQFP---L 294 (398)
T ss_dssp SCEEECC----------------CCSHHHHHHHGGGG---TCEEEECCCC--------------CCTTEEEESCCC---H
T ss_pred CCEEEEEccCcccccccccccchHHHHHHHHHHHHhC---CCEEEEEeCCcc--hhhhc----cCCCcEEEeCcCC---H
Confidence 346788899997555 345555555443 789998887752 22222 3455688777665 3
Q ss_pred HHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEe----cCCCccceEEcCCceeEeccccccCCCCCcc--CHHHHHH
Q 010448 370 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA----STGGLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVST 443 (510)
Q Consensus 370 ~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s----~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~ 443 (510)
..+++.||++|. .+.+.+++|||++|+|+|+. +..+..+.+.+.++|+++ ++. +++++++
T Consensus 295 ~~ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~ 360 (398)
T 4fzr_A 295 SAIMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEV----------PWEQAGVESVLA 360 (398)
T ss_dssp HHHGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEEC----------C-------CHHH
T ss_pred HHHHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEec----------CcccCCHHHHHH
Confidence 468999999994 44578999999999999994 455777788888999987 655 7899999
Q ss_pred HHHHHHHhhCHHHHHHHHHHH--hhccCChHHHHHHHH
Q 010448 444 TVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWE 479 (510)
Q Consensus 444 ~i~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~ 479 (510)
+|.+++++ ++.+.++++.+ .....+++.+++.++
T Consensus 361 ai~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 361 ACARIRDD--SSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHC--THHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHhC--HHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 99999998 44444554443 467789998887764
No 38
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.62 E-value=2.5e-14 Score=146.42 Aligned_cols=161 Identities=13% Similarity=0.073 Sum_probs=110.3
Q ss_pred CCcEEEEecCcccccChhhHHHHHHhhhh-CCcEE-EEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCc
Q 010448 300 NIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQI-IVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 377 (510)
Q Consensus 300 ~~~~i~~~Grl~~~Kg~~~li~a~~~l~~-~~~~l-~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ad 377 (510)
+.++++++|++. .++.+.+.++++.+.+ +++++ +++|++... +.++ ..+.++.+.+..+.. .+|+.||
T Consensus 232 ~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~--~~l~----~~~~~v~~~~~~~~~---~~l~~ad 301 (430)
T 2iyf_A 232 EKVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTP--AELG----ELPDNVEVHDWVPQL---AILRQAD 301 (430)
T ss_dssp SEEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---CG--GGGC----SCCTTEEEESSCCHH---HHHTTCS
T ss_pred CCeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCCh--HHhc----cCCCCeEEEecCCHH---HHhhccC
Confidence 346888999998 5555555555555544 47887 567876521 1121 234568887777654 5899999
Q ss_pred EEEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHHHHHh
Q 010448 378 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALAT 451 (510)
Q Consensus 378 v~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ll~~ 451 (510)
++|..+ .+++++|||++|+|+|+...++ ..+.+.+.++|+++ +++ ++++++++|.+++++
T Consensus 302 ~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~~ 367 (430)
T 2iyf_A 302 LFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKL----------ATEEATADLLRETALALVDD 367 (430)
T ss_dssp EEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEEC----------CCC-CCHHHHHHHHHHHHHC
T ss_pred EEEECC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEc----------CCCCCCHHHHHHHHHHHHcC
Confidence 999764 2479999999999999998765 45566777889987 555 889999999999998
Q ss_pred hCHHHHHHHHHHH--hhccCChHHHHHHHHHHHHHHH
Q 010448 452 YGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLNLE 486 (510)
Q Consensus 452 ~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y~~l~ 486 (510)
++.+.++++.+ ....++++.+++.+.+++++..
T Consensus 368 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 368 --PEVARRLRRIQAEMAQEGGTRRAADLIEAELPARH 402 (430)
T ss_dssp --HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC--
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhccc
Confidence 55444444443 3345788888888877765443
No 39
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.55 E-value=6.7e-14 Score=140.60 Aligned_cols=195 Identities=19% Similarity=0.133 Sum_probs=135.2
Q ss_pred HHHH-HhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCC-CCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 210 KAGI-LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 210 ~~~~-~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpng-vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+..+ +.+|.+++.|+..++.+.+ .|++++ ++.++.|. +|.-.+. .....+.
T Consensus 140 R~~~~~~a~~~~~~te~~~~~l~~---~G~~~~------~I~vtGnp~~D~~~~~------------------~~~~~~~ 192 (385)
T 4hwg_A 140 RKIIDHISDVNITLTEHARRYLIA---EGLPAE------LTFKSGSHMPEVLDRF------------------MPKILKS 192 (385)
T ss_dssp HHHHHHHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCSHHHHHHHH------------------HHHHHHC
T ss_pred HHHHHhhhceeecCCHHHHHHHHH---cCCCcC------cEEEECCchHHHHHHh------------------hhhcchh
Confidence 4443 4689999999999999987 687765 78888874 3321110 0112345
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcc---cccChhhHHHHHHhhhhC-CcEEEEEecCChhHHHHHHHH-H-HHCCCceEEe
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLE---EQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQL-E-ILYPEKARGV 361 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~---~~Kg~~~li~a~~~l~~~-~~~l~i~G~g~~~~~~~~~~l-~-~~~~~~v~~~ 361 (510)
.+++++|++. ++.+++..||.. ..|+++.+++++.++.+. ++++++... +...+.+++. . .....++.+.
T Consensus 193 ~~~~~lgl~~--~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~--p~~~~~l~~~~~~~~~~~~v~l~ 268 (385)
T 4hwg_A 193 DILDKLSLTP--KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTH--PRTKKRLEDLEGFKELGDKIRFL 268 (385)
T ss_dssp CHHHHTTCCT--TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEEC--HHHHHHHHTSGGGGGTGGGEEEC
T ss_pred HHHHHcCCCc--CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECC--hHHHHHHHHHHHHhcCCCCEEEE
Confidence 6788899863 345666777753 347899999999998653 677766543 3345555554 2 1112357777
Q ss_pred ccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCC-CccceEEcCCceeEeccccccCCCCCccCHHH
Q 010448 362 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 440 (510)
Q Consensus 362 ~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~g-g~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~ 440 (510)
..+...+...+|+.||+++.+| |....||+++|+|||+.... +.+|.++.| +++++ ..|.++
T Consensus 269 ~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv-----------~~d~~~ 331 (385)
T 4hwg_A 269 PAFSFTDYVKLQMNAFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDAG-TLIMS-----------GFKAER 331 (385)
T ss_dssp CCCCHHHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEEC-----------CSSHHH
T ss_pred cCCCHHHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEc-----------CCCHHH
Confidence 7777667778999999999776 55689999999999998654 356776655 66765 358999
Q ss_pred HHHHHHHHHHhh
Q 010448 441 VSTTVRRALATY 452 (510)
Q Consensus 441 la~~i~~ll~~~ 452 (510)
+++++.++++++
T Consensus 332 i~~ai~~ll~d~ 343 (385)
T 4hwg_A 332 VLQAVKTITEEH 343 (385)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCh
Confidence 999999999883
No 40
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.55 E-value=6.5e-13 Score=134.41 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=107.3
Q ss_pred CCcEEEEecCccccc--ChhhHHHHHHhhhhCCcEEEE-EecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhC
Q 010448 300 NIPVIGFIGRLEEQK--GSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 376 (510)
Q Consensus 300 ~~~~i~~~Grl~~~K--g~~~li~a~~~l~~~~~~l~i-~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~a 376 (510)
...++++.|+....+ .+..+++++.. .+.++++ +|++.. .+.++ ..+.++.+.+..+.. .+|+.|
T Consensus 231 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~--~~~~~----~~~~~v~~~~~~~~~---~ll~~a 298 (402)
T 3ia7_A 231 APVLLVSLGNQFNEHPEFFRACAQAFAD---TPWHVVMAIGGFLD--PAVLG----PLPPNVEAHQWIPFH---SVLAHA 298 (402)
T ss_dssp CCEEEEECCSCSSCCHHHHHHHHHHHTT---SSCEEEEECCTTSC--GGGGC----SCCTTEEEESCCCHH---HHHTTE
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHHhc---CCcEEEEEeCCcCC--hhhhC----CCCCcEEEecCCCHH---HHHhhC
Confidence 346788899987655 34444444443 3466665 565531 11111 134568777766655 689999
Q ss_pred cEEEeCCCCCCccHHHHHHHHhCCCcEEecC-----CCccceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHHHH
Q 010448 377 DFILIPSRFEPCGLIQLHAMRYGTVPIVAST-----GGLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 449 (510)
Q Consensus 377 dv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~-----gg~~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ll 449 (510)
|++|..+ -..+++|||++|+|+|+... .+..+.+.+.+.|..+ .++ +++++++++.+++
T Consensus 299 d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~~~~ll 364 (402)
T 3ia7_A 299 RACLTHG----TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVL----------RPDQLEPASIREAVERLA 364 (402)
T ss_dssp EEEEECC----CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEEC----------CGGGCSHHHHHHHHHHHH
T ss_pred CEEEECC----CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEc----------cCCCCCHHHHHHHHHHHH
Confidence 9999765 24788999999999995543 4666777888899887 555 8999999999999
Q ss_pred HhhCHHHHHHHHHHH--hhccCChHHHHHHHHHHHHH
Q 010448 450 ATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLN 484 (510)
Q Consensus 450 ~~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y~~ 484 (510)
+| ++.+.++.+.+ .....+++.+++.+.+++..
T Consensus 365 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 365 AD--SAVRERVRRMQRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HC--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cC--HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Confidence 98 44444443333 45667888888888777754
No 41
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.54 E-value=2e-13 Score=138.24 Aligned_cols=154 Identities=13% Similarity=0.094 Sum_probs=111.0
Q ss_pred CCcEEEEecCcccc-cChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcE
Q 010448 300 NIPVIGFIGRLEEQ-KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 378 (510)
Q Consensus 300 ~~~~i~~~Grl~~~-Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv 378 (510)
...+++++|++... ++.+.+.++++.+.+.+++++++|++.+ .+.++ ..+.++.+.+..+. ..+|+.||+
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~--~~~l~----~~~~~v~~~~~~~~---~~ll~~ad~ 302 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD--ISPLG----TLPRNVRAVGWTPL---HTLLRTCTA 302 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSC--CGGGC----SCCTTEEEESSCCH---HHHHTTCSE
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcC--hhhhc----cCCCcEEEEccCCH---HHHHhhCCE
Confidence 34678889999765 4767776666666656899999987752 11111 23456887776643 358999999
Q ss_pred EEeCCCCCCccHHHHHHHHhCCCcEE----ecCCCcc--ceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHHHHH
Q 010448 379 ILIPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLV--DTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALA 450 (510)
Q Consensus 379 ~v~ps~~E~~g~~~~Eama~G~Pvv~----s~~gg~~--e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ll~ 450 (510)
+|. .+.+.+++|||++|+|+|+ .+..+.. +.+.+.++|+++ ++. +.+.++ ++++
T Consensus 303 ~v~----~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~----------~~~~~~~~~l~----~ll~ 364 (398)
T 3oti_A 303 VVH----HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVS----------TSDKVDADLLR----RLIG 364 (398)
T ss_dssp EEE----CCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEEC----------CGGGCCHHHHH----HHHH
T ss_pred EEE----CCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEee----------CCCCCCHHHHH----HHHc
Confidence 995 3456799999999999999 5667888 889888999987 554 566665 7788
Q ss_pred hhCHHHHHHHHHHH--hhccCChHHHHHHHHHHH
Q 010448 451 TYGTQALAEMMKNG--MAQDLSWKGPAKKWEETL 482 (510)
Q Consensus 451 ~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y 482 (510)
| ++.+.++++.+ +....+++.+++.++++.
T Consensus 365 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 365 D--ESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp C--HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7 55554444443 457789999988887664
No 42
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.50 E-value=6.5e-14 Score=141.45 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=109.9
Q ss_pred CcEEEEecCcccccCh-hhHHHHHHhhhh-CCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcE
Q 010448 301 IPVIGFIGRLEEQKGS-DILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 378 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~-~~li~a~~~l~~-~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv 378 (510)
..++++.|++...|+. ..+++++.+..+ ++++++++|+++. .+.+. ..+.++.+.+..+.. .+++.||+
T Consensus 219 ~~vlv~~G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~ad~ 289 (391)
T 3tsa_A 219 RRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEH--RALLT----DLPDNARIAESVPLN---LFLRTCEL 289 (391)
T ss_dssp EEEEEECCHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGG--GGGCT----TCCTTEEECCSCCGG---GTGGGCSE
T ss_pred CEEEEEcCCCCCcccchHHHHHHHHHhccCCCeEEEEEECCcc--hhhcc----cCCCCEEEeccCCHH---HHHhhCCE
Confidence 4577778998765544 566666555522 4899999987652 11121 234567777666543 46799999
Q ss_pred EEeCCCCCCccHHHHHHHHhCCCcEEec----CCCccceEEcCCceeEeccccccCCCCCc----cCHHHHHHHHHHHHH
Q 010448 379 ILIPSRFEPCGLIQLHAMRYGTVPIVAS----TGGLVDTVEEGFTGFQMGSFSVDCEAVDP----VDVAAVSTTVRRALA 450 (510)
Q Consensus 379 ~v~ps~~E~~g~~~~Eama~G~Pvv~s~----~gg~~e~v~~~~~G~l~~~~~~~~~~~~~----~d~~~la~~i~~ll~ 450 (510)
+|. ++.+.+++|||++|+|+|+.. ..+..+.+.+.+.|+++ ++ .+++++++++.++++
T Consensus 290 ~v~----~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 290 VIC----AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICL----------PDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp EEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEEC----------CSHHHHTCHHHHHHHHHHHHT
T ss_pred EEe----CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEec----------CcccccCCHHHHHHHHHHHHc
Confidence 995 345679999999999999954 44566678888899987 66 689999999999999
Q ss_pred hhCHHHHHHHHHHH--hhccCChHHHHHHHHHHH
Q 010448 451 TYGTQALAEMMKNG--MAQDLSWKGPAKKWEETL 482 (510)
Q Consensus 451 ~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y 482 (510)
+ ++.+.++++.+ .....+++.+++.++++.
T Consensus 356 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (391)
T 3tsa_A 356 D--TGFAAAAIKLSDEITAMPHPAALVRTLENTA 387 (391)
T ss_dssp C--THHHHHHHHHHHHHHTSCCHHHHHHHHHHC-
T ss_pred C--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8 44444444433 456788888888776654
No 43
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.44 E-value=4.1e-12 Score=129.26 Aligned_cols=157 Identities=14% Similarity=0.040 Sum_probs=105.1
Q ss_pred CCcEEEEecCcccccC--hhhHHHHHHhhhhCCcEEEE-EecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhC
Q 010448 300 NIPVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 376 (510)
Q Consensus 300 ~~~~i~~~Grl~~~Kg--~~~li~a~~~l~~~~~~l~i-~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~a 376 (510)
...++++.|+...... +..+++++..+ ++++++ +|++.. .+.++ ..+.++.+.+..+.. .+|+.|
T Consensus 247 ~~~v~v~~Gs~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~a 314 (415)
T 3rsc_A 247 LPVVLVSLGTTFNDRPGFFRDCARAFDGQ---PWHVVMTLGGQVD--PAALG----DLPPNVEAHRWVPHV---KVLEQA 314 (415)
T ss_dssp CCEEEEECTTTSCCCHHHHHHHHHHHTTS---SCEEEEECTTTSC--GGGGC----CCCTTEEEESCCCHH---HHHHHE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHhcC---CcEEEEEeCCCCC--hHHhc----CCCCcEEEEecCCHH---HHHhhC
Confidence 3467888899864432 44444544433 577777 565531 11111 234568777666654 589999
Q ss_pred cEEEeCCCCCCccHHHHHHHHhCCCcEEe----cCCCccceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHHHHH
Q 010448 377 DFILIPSRFEPCGLIQLHAMRYGTVPIVA----STGGLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALA 450 (510)
Q Consensus 377 dv~v~ps~~E~~g~~~~Eama~G~Pvv~s----~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ll~ 450 (510)
|++|..+ -..+++|||++|+|+|+. +.....+.+.+.+.|..+ .++ ++++++++|.++++
T Consensus 315 d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~ 380 (415)
T 3rsc_A 315 TVCVTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVL----------PGEKADGDTLLAAVGAVAA 380 (415)
T ss_dssp EEEEESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEEC----------CGGGCCHHHHHHHHHHHHT
T ss_pred CEEEECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEc----------ccCCCCHHHHHHHHHHHHc
Confidence 9999764 246889999999999995 444456677777888876 554 89999999999999
Q ss_pred hhCHHHHHHHHHHH--hhccCChHHHHHHHHHHHHH
Q 010448 451 TYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLN 484 (510)
Q Consensus 451 ~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y~~ 484 (510)
+ ++.+.++.+.+ .....+++.+++.+.+++.+
T Consensus 381 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 381 D--PALLARVEAMRGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp C--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 8 44444443332 34567788888877776643
No 44
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.40 E-value=1.4e-11 Score=124.03 Aligned_cols=153 Identities=13% Similarity=0.109 Sum_probs=104.6
Q ss_pred CcEEEEecCcccc-------cChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHH
Q 010448 301 IPVIGFIGRLEEQ-------KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 373 (510)
Q Consensus 301 ~~~i~~~Grl~~~-------Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 373 (510)
..++++.|++... +.++.+++++..+ ++++++++.++ ..+.++. .+.++.+ +..+. ..+|
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~--~~~~l~~----~~~~v~~-~~~~~---~~~l 277 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW---DVELIVAAPDT--VAEALRA----EVPQARV-GWTPL---DVVA 277 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT---TCEEEEECCHH--HHHHHHH----HCTTSEE-ECCCH---HHHG
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC---CcEEEEEeCCC--CHHhhCC----CCCceEE-cCCCH---HHHH
Confidence 4688899999875 4566677776654 78888876443 2222322 2445777 66653 3589
Q ss_pred HhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHH
Q 010448 374 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRR 447 (510)
Q Consensus 374 ~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ 447 (510)
+.||++|..+ .+.+++|||++|+|+|+...++ ..+.+.+.++|+.+ ++. +.++++++|.+
T Consensus 278 ~~~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~i~~ 343 (384)
T 2p6p_A 278 PTCDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIAL----------LPGEDSTEAIADSCQE 343 (384)
T ss_dssp GGCSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEEC----------CTTCCCHHHHHHHHHH
T ss_pred hhCCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEec----------CcCCCCHHHHHHHHHH
Confidence 9999999763 4568999999999999997643 56667777789887 543 79999999999
Q ss_pred HHHhhCHHHHHHHHHHH--hhccCChHHHHHHHHHHH
Q 010448 448 ALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETL 482 (510)
Q Consensus 448 ll~~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y 482 (510)
++++ ++.+.++.+.+ +...-..+.+++.+.++.
T Consensus 344 ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 344 LQAK--DTYARRAQDLSREISGMPLPATVVTALEQLA 378 (384)
T ss_dssp HHHC--HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHcC--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9998 44444444333 233446666666555543
No 45
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.05 E-value=3.7e-08 Score=100.25 Aligned_cols=157 Identities=10% Similarity=0.010 Sum_probs=99.7
Q ss_pred CCcEEEEecCcccccChhhHHHHHHhhhhCCcEEE-EEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcE
Q 010448 300 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 378 (510)
Q Consensus 300 ~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~-i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv 378 (510)
...++++.|+.. .+..+.+.++++.+.+.+++++ ++|.+... +.+. ..+.++......+.. .+|+.||+
T Consensus 255 ~~~v~v~~Gs~~-~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~--~~~~----~~~~~v~~~~~~~~~---~~l~~~d~ 324 (424)
T 2iya_A 255 RPVLLIALGSAF-TDHLDFYRTCLSAVDGLDWHVVLSVGRFVDP--ADLG----EVPPNVEVHQWVPQL---DILTKASA 324 (424)
T ss_dssp CCEEEEECCSSS-CCCHHHHHHHHHHHTTCSSEEEEECCTTSCG--GGGC----SCCTTEEEESSCCHH---HHHTTCSE
T ss_pred CCEEEEEcCCCC-cchHHHHHHHHHHHhcCCcEEEEEECCcCCh--HHhc----cCCCCeEEecCCCHH---HHHhhCCE
Confidence 346778889987 3333444444444444567774 46765421 1111 234567777766654 58999999
Q ss_pred EEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHHHHHhh
Q 010448 379 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALATY 452 (510)
Q Consensus 379 ~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ll~~~ 452 (510)
+|.. +-..+++||+++|+|+|+....+ ..+.+.+.+.|+.+ +.. +.++++++|.+++++
T Consensus 325 ~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~~- 389 (424)
T 2iya_A 325 FITH----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHI----------PRDQVTAEKLREAVLAVASD- 389 (424)
T ss_dssp EEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEEC----------CGGGCCHHHHHHHHHHHHHC-
T ss_pred EEEC----CchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEc----------CcCCCCHHHHHHHHHHHHcC-
Confidence 9864 23479999999999999997643 34455666788876 444 889999999999998
Q ss_pred CHHHHHHHHHHH--hhccCChHHHHHHHHHHH
Q 010448 453 GTQALAEMMKNG--MAQDLSWKGPAKKWEETL 482 (510)
Q Consensus 453 ~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y 482 (510)
++.+.++.+.+ .......+..++.+++++
T Consensus 390 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 390 -PGVAERLAAVRQEIREAGGARAAADILEGIL 420 (424)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44333333322 233445555555555443
No 46
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.03 E-value=3.4e-09 Score=110.07 Aligned_cols=175 Identities=13% Similarity=0.126 Sum_probs=119.1
Q ss_pred hCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhh--CCcEEE--EEecCC---hhHHHHHHHHHHHCCCceEEeccCC
Q 010448 293 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQII--VLGTGK---KPMEKQLEQLEILYPEKARGVAKFN 365 (510)
Q Consensus 293 ~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~~~~l~--i~G~g~---~~~~~~~~~l~~~~~~~v~~~~~~~ 365 (510)
++++.+.+.++++..++ ..|..+.+++++.++.+ |+..++ ++|.+. ....+.+.+.... .++.+.+..+
T Consensus 433 ~~lp~~~G~v~Fg~fn~--~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~--~Rv~F~g~~p 508 (631)
T 3q3e_A 433 YLLRENPEVVNIGIAST--TMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLG--DSATAHPHSP 508 (631)
T ss_dssp CCCCSCCSEEEEEEEEC--STTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHHG--GGEEEECCCC
T ss_pred ccCCcCCCeEEEEECCc--cccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCCC--ccEEEcCCCC
Confidence 45654334677888887 47889999999998886 566553 367432 2233334444433 4788888888
Q ss_pred HHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEE------cCCceeEeccccccCCCCCccCHH
Q 010448 366 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE------EGFTGFQMGSFSVDCEAVDPVDVA 439 (510)
Q Consensus 366 ~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~------~~~~G~l~~~~~~~~~~~~~~d~~ 439 (510)
.++....|+.+|+++-|+.+.+ |++.+|||+||+|||+...+++..-+. -|-.++++ ..+.+
T Consensus 509 ~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LI-----------A~d~e 576 (631)
T 3q3e_A 509 YHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLI-----------ANTVD 576 (631)
T ss_dssp HHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGE-----------ESSHH
T ss_pred HHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCccee-----------cCCHH
Confidence 8877789999999999997654 999999999999999987665554332 12333322 36789
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHhh-----ccCChHHHHHHHHHHHHHHHH
Q 010448 440 AVSTTVRRALATYGTQALAEMMKNGMA-----QDLSWKGPAKKWEETLLNLEV 487 (510)
Q Consensus 440 ~la~~i~~ll~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~~y~~l~~ 487 (510)
++++...++.+| ++.+.+++++... .-|+ ..+++|.+.|+++++
T Consensus 577 eYv~~Av~La~D--~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~ 625 (631)
T 3q3e_A 577 EYVERAVRLAEN--HQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLN 625 (631)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--HHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHH
Confidence 999999999998 6666666555432 1343 344555555555544
No 47
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=99.03 E-value=4.6e-08 Score=103.46 Aligned_cols=295 Identities=18% Similarity=0.180 Sum_probs=185.7
Q ss_pred CCeEEEeccchhhhHHHHHHH-hhcCCCC-------CCCCcEEEEecCCCccc--ccCccchhh-cC--------CChhh
Q 010448 127 EDVVFVANDWHTSLIPCYLKT-MYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGL-LN--------LPAQF 187 (510)
Q Consensus 127 pD~iih~h~~~~~~~~~~l~~-~~~~~~~-------~~~~~~V~tiH~~~~~~--~~~~~~~~~-~~--------~~~~~ 187 (510)
+. +||.|+.|++++..-+.+ +.-..++ .....++||.|+..+.+ .||...+.. ++ +...+
T Consensus 360 ~~-~ihlNDtHpalai~ELmR~L~d~~gl~wd~Aw~iv~~t~~yTnHT~lpealE~wpv~l~~~lLpr~~~II~ein~~f 438 (879)
T 1ygp_A 360 QV-AIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFF 438 (879)
T ss_dssp HE-EEEEESSTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHEEEEECCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ce-EEEccCCcHHHHHHHHHHHHhhhcCCCHHHHHHHHHHheeeecCcCchHhhccCCHHHHHHHCCcHHHHHHHHHHHH
Confidence 46 999999998766544432 2211111 02357899999876644 355544322 11 00010
Q ss_pred hcc-----------cccccCCCCCCCCCcchHHHHHHHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCC
Q 010448 188 KSS-----------FDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM 256 (510)
Q Consensus 188 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngv 256 (510)
... +..+.-...--....+++-..++..+..|..||.-..+.+++.... +....++..|+.-+.|||
T Consensus 439 ~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~MA~LAi~~S~~vNGVs~LH~ev~k~~~f~--df~~l~P~~kf~n~TNGV 516 (879)
T 1ygp_A 439 LEDVAKKFPKDVDLLSRISIIEENSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFK--DFIKFYGPSKFVNVTNGI 516 (879)
T ss_dssp HHHHHHHSTTCTHHHHHHCSEECCSSSCEEEHHHHHHHHEEEEEESSHHHHHHHHHTTTH--HHHHHHCGGGEEECCCCB
T ss_pred HHHHHHHcCCCHHHHHhcceeccCCCcceeehHHHHHHhcCceeEehHHHHHHHHHHHhH--HHHHhCCCCcccCcCCCc
Confidence 000 0000000000001356777778999999999999988888542100 011122223788999999
Q ss_pred CCCCCCCCCccc--------cc---cCC--C-----------c-----CChhhchHHHHHH----HHHHh-CCCCC----
Q 010448 257 DVQEWNPLTDKY--------IG---VKY--D-----------A-----STVMDAKPLLKEA----LQAEV-GLPVD---- 298 (510)
Q Consensus 257 d~~~~~~~~~~~--------~~---~~~--~-----------~-----~~~~~~~~~~~~~----~~~~~-g~~~~---- 298 (510)
....|-...++. +. ..| + . +.+.+.|..+|.. ++++. |+..+
T Consensus 517 t~rrWl~~~Np~L~~Li~~~iG~~~~~W~~d~~~L~~l~~~~~D~~f~~~l~~iK~~nK~~La~~i~~~~~g~~ld~~~~ 596 (879)
T 1ygp_A 517 TPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREY 596 (879)
T ss_dssp CHHHHTTTTCHHHHHHHHHHTTCTTCGGGTCGGGGGGGGGGGGCTHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCSTT
T ss_pred CCchhhhhcCHHHHHHHHHhcCCChhhhhhCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEecCCCC
Confidence 877774221111 01 111 1 1 1123344444443 45567 88777
Q ss_pred -CCCcEEEEecCcccccChhh-HHHHHHhhhh------------------CCcEEEEEecCCh------hHHHHHHHHHH
Q 010448 299 -RNIPVIGFIGRLEEQKGSDI-LAAAIPHFIK------------------ENVQIIVLGTGKK------PMEKQLEQLEI 352 (510)
Q Consensus 299 -~~~~~i~~~Grl~~~Kg~~~-li~a~~~l~~------------------~~~~l~i~G~g~~------~~~~~~~~l~~ 352 (510)
++.+.++++-|+.++|...+ ++..+.++.+ .+.++++.|+..+ .+-+.+.+.+.
T Consensus 597 ~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~ 676 (879)
T 1ygp_A 597 LDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVAD 676 (879)
T ss_dssp GGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHH
Confidence 78899999999999999888 5665544321 3678999997542 22233444443
Q ss_pred ------HCCC--ceEEeccCCHHHHHHHHHhCcEEEeCCCC--CCccHHHHHHHHhCCCcEEecCCCccceEEc--CCce
Q 010448 353 ------LYPE--KARGVAKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTG 420 (510)
Q Consensus 353 ------~~~~--~v~~~~~~~~~~~~~~~~~adv~v~ps~~--E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~--~~~G 420 (510)
..++ +|+|...|+-.....++.+||+-...|.. |.+|.+-+-+|..|.+.+++--|...|+.++ ..|+
T Consensus 677 ~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~ 756 (879)
T 1ygp_A 677 IVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNV 756 (879)
T ss_dssp HHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGS
T ss_pred HhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccE
Confidence 2334 79999999999999999999999999875 9999999999999999999999999998866 4599
Q ss_pred eEec
Q 010448 421 FQMG 424 (510)
Q Consensus 421 ~l~~ 424 (510)
|+||
T Consensus 757 fiFG 760 (879)
T 1ygp_A 757 FLFG 760 (879)
T ss_dssp EEES
T ss_pred EEcc
Confidence 9997
No 48
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.97 E-value=2.6e-08 Score=100.83 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=86.4
Q ss_pred CCcEEEEecCcc-cccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcE
Q 010448 300 NIPVIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 378 (510)
Q Consensus 300 ~~~~i~~~Grl~-~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv 378 (510)
...++++.|++. ..+.+..+++++..+ ++++++.+.+.. .. . ...+.++......+.. .++..||+
T Consensus 221 ~~~Vlv~~Gs~~~~~~~~~~~~~al~~~---~~~vv~~~g~~~-~~-~-----~~~~~~v~~~~~~~~~---~ll~~~d~ 287 (404)
T 3h4t_A 221 SPPVYVGFGSGPAPAEAARVAIEAVRAQ---GRRVVLSSGWAG-LG-R-----IDEGDDCLVVGEVNHQ---VLFGRVAA 287 (404)
T ss_dssp SCCEEECCTTSCCCTTHHHHHHHHHHHT---TCCEEEECTTTT-CC-C-----SSCCTTEEEESSCCHH---HHGGGSSE
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHHHhC---CCEEEEEeCCcc-cc-c-----ccCCCCEEEecCCCHH---HHHhhCcE
Confidence 346888889988 666677777777765 677777654331 10 0 1124567777666643 57899999
Q ss_pred EEeCCCCCCccHHHHHHHHhCCCcEEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 379 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 379 ~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
+|..+ -..++.||+++|+|+|+....+- .+.+.+.+.|..+. ....+.++++++|.++++
T Consensus 288 ~v~~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~--------~~~~~~~~l~~ai~~ll~ 351 (404)
T 3h4t_A 288 VVHHG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHD--------GPTPTVESLSAALATALT 351 (404)
T ss_dssp EEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECS--------SSSCCHHHHHHHHHHHTS
T ss_pred EEECC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccC--------cCCCCHHHHHHHHHHHhC
Confidence 99544 34789999999999999865442 23455567788761 012378999999999997
No 49
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.95 E-value=3.7e-09 Score=93.26 Aligned_cols=122 Identities=10% Similarity=0.052 Sum_probs=93.9
Q ss_pred CcEEEEecCcc---cccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHH--Hh
Q 010448 301 IPVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AG 375 (510)
Q Consensus 301 ~~~i~~~Grl~---~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~ 375 (510)
..++++.|++. +.|++..+++++.++ +.++++++.+... ...+.++.+.+..+... ++ +.
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~~~---------~~~~~~v~~~~~~~~~~---~l~~~~ 86 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQI---PQKVLWRFDGNKP---------DTLGLNTRLYKWIPQND---LLGHPK 86 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTS---SSEEEEECCSSCC---------TTCCTTEEEESSCCHHH---HHTSTT
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhC---CCeEEEEECCcCc---------ccCCCcEEEecCCCHHH---HhcCCC
Confidence 46888999985 678888888888765 5788887765521 12345688877777643 45 99
Q ss_pred CcEEEeCCCCCCccHHHHHHHHhCCCcEEecCC----CccceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHHHH
Q 010448 376 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 449 (510)
Q Consensus 376 adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~g----g~~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ll 449 (510)
||++|.. +.+.+++|||++|+|+|+.... +..+.+.+.+.|+.+ ++. +.++++++|.+++
T Consensus 87 ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll 152 (170)
T 2o6l_A 87 TRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRV----------DFNTMSSTDLLNALKRVI 152 (170)
T ss_dssp EEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEEC----------CTTTCCHHHHHHHHHHHH
T ss_pred cCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEe----------ccccCCHHHHHHHHHHHH
Confidence 9999964 4569999999999999999864 345667777889987 555 8899999999999
Q ss_pred Hh
Q 010448 450 AT 451 (510)
Q Consensus 450 ~~ 451 (510)
++
T Consensus 153 ~~ 154 (170)
T 2o6l_A 153 ND 154 (170)
T ss_dssp HC
T ss_pred cC
Confidence 87
No 50
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.91 E-value=2.5e-08 Score=100.47 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=93.8
Q ss_pred CcEEEEecCccccc-ChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEE
Q 010448 301 IPVIGFIGRLEEQK-GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 379 (510)
Q Consensus 301 ~~~i~~~Grl~~~K-g~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~ 379 (510)
..++++.|.+...+ +.+.+.+++..+.+.+.++++.+.+.+. . .....+.++....+.+.. .+|..+|++
T Consensus 238 ~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~--~----~~~~~~~~v~~~~~~p~~---~lL~~~~~~ 308 (400)
T 4amg_A 238 RRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL--A----LLGELPANVRVVEWIPLG---ALLETCDAI 308 (400)
T ss_dssp CEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC--C----CCCCCCTTEEEECCCCHH---HHHTTCSEE
T ss_pred cEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc--c----ccccCCCCEEEEeecCHH---HHhhhhhhe
Confidence 45677788876544 4566666677776667888777654310 0 011234567776766644 478999998
Q ss_pred EeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhhCH-
Q 010448 380 LIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT- 454 (510)
Q Consensus 380 v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~~~- 454 (510)
|. .+-..+++||+++|+|+|+....+ +.+.+.+.+.|+.+ +. .+..+++|.++++|++-
T Consensus 309 v~----h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l----------~~--~~~~~~al~~lL~d~~~r 372 (400)
T 4amg_A 309 IH----HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA----------EA--GSLGAEQCRRLLDDAGLR 372 (400)
T ss_dssp EE----CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEEC----------CT--TTCSHHHHHHHHHCHHHH
T ss_pred ec----cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEc----------CC--CCchHHHHHHHHcCHHHH
Confidence 84 345678999999999999965443 44555566778765 33 34467899999998421
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHH
Q 010448 455 QALAEMMKNGMAQDLSWKGPAKKWEE 480 (510)
Q Consensus 455 ~~~~~~~~~~~~~~fs~~~~~~~~~~ 480 (510)
+..+++++. +...=+....++.+++
T Consensus 373 ~~a~~l~~~-~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 373 EAALRVRQE-MSEMPPPAETAAXLVA 397 (400)
T ss_dssp HHHHHHHHH-HHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 222222222 2333466666665544
No 51
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.72 E-value=3.9e-08 Score=100.67 Aligned_cols=154 Identities=15% Similarity=0.065 Sum_probs=106.4
Q ss_pred CcEEEEecCccc-----ccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh
Q 010448 301 IPVIGFIGRLEE-----QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 375 (510)
Q Consensus 301 ~~~i~~~Grl~~-----~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 375 (510)
..++++.|++.. .+.+..+++++..+ ++++++.+.+.. .+.++ ..+.++...+..+.. .+|..
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~ 335 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV---DAEIIATFDAQQ--LEGVA----NIPDNVRTVGFVPMH---ALLPT 335 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS---SSEEEECCCTTT--TSSCS----SCCSSEEECCSCCHH---HHGGG
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC---CCEEEEEECCcc--hhhhc----cCCCCEEEecCCCHH---HHHhh
Confidence 357888999875 48888999998765 688888766542 11111 234567777766653 47899
Q ss_pred CcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcCCceeEeccccccCCCCCcc--CHHHHHHHHHHHH
Q 010448 376 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 449 (510)
Q Consensus 376 adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~--d~~~la~~i~~ll 449 (510)
||++|.. +.+.+++|||++|+|+|+....+ +.+.+.+.+.|+.+ ++. ++++++++|.+++
T Consensus 336 ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll 401 (441)
T 2yjn_A 336 CAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIAL----------PVPELTPDQLRESVKRVL 401 (441)
T ss_dssp CSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEEC----------CTTTCCHHHHHHHHHHHH
T ss_pred CCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEc----------ccccCCHHHHHHHHHHHh
Confidence 9999963 44679999999999999998743 55667777889887 544 8899999999999
Q ss_pred HhhCHHHHHHHHHHH--hhccCChHHHHHHHHHHH
Q 010448 450 ATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETL 482 (510)
Q Consensus 450 ~~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~~y 482 (510)
++ ++.+.++.+.+ +....+.+.+++.+++++
T Consensus 402 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 434 (441)
T 2yjn_A 402 DD--PAHRAGAARMRDDMLAEPSPAEVVGICEELA 434 (441)
T ss_dssp HC--HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred cC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 98 54444444333 345677777777776654
No 52
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.28 E-value=2.7e-06 Score=86.11 Aligned_cols=155 Identities=16% Similarity=0.083 Sum_probs=104.3
Q ss_pred CcEEEEecCc-ccccChhhHHHHHHhhhhCCcEEEEE-ecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcE
Q 010448 301 IPVIGFIGRL-EEQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 378 (510)
Q Consensus 301 ~~~i~~~Grl-~~~Kg~~~li~a~~~l~~~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv 378 (510)
..++++.|++ ...+..+.++++++.+ +.+++++ |.+... . ...+.++......+.. .++..||+
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~----~----~~~~~~v~~~~~~~~~---~~l~~~d~ 304 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH---GRRVILSRGWADLV----L----PDDGADCFAIGEVNHQ---VLFGRVAA 304 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT---TCCEEECTTCTTCC----C----SSCGGGEEECSSCCHH---HHGGGSSE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC---CCeEEEEeCCCccc----c----cCCCCCEEEeCcCChH---HHHhhCCE
Confidence 4688899999 4888888899998876 4566555 665421 0 1233457777766654 46899999
Q ss_pred EEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcCCceeEeccccccCCCCCc--cCHHHHHHHHHHHHHhh
Q 010448 379 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDP--VDVAAVSTTVRRALATY 452 (510)
Q Consensus 379 ~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~--~d~~~la~~i~~ll~~~ 452 (510)
+|..+ -..+++|||++|+|+|+....+ ..+.+.+.+.|+.+ +. .+.++++++|.++ ++
T Consensus 305 ~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~l-~~- 368 (415)
T 1iir_A 305 VIHHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAH----------DGPIPTFDSLSAALATA-LT- 368 (415)
T ss_dssp EEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------SSSSCCHHHHHHHHHHH-TS-
T ss_pred EEeCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccC----------CcCCCCHHHHHHHHHHH-cC-
Confidence 99643 3479999999999999987654 44556666788876 33 3889999999999 76
Q ss_pred CHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHc
Q 010448 453 GTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVA 488 (510)
Q Consensus 453 ~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~ 488 (510)
++.+.++.+.+ +.+....-+++..+.++.++..
T Consensus 369 -~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 369 -PETHARATAVA--GTIRTDGAAVAARLLLDAVSRE 401 (415)
T ss_dssp -HHHHHHHHHHH--HHSCSCHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHH--HHHhhcChHHHHHHHHHHHHhc
Confidence 44444433332 2234455566666667766644
No 53
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.03 E-value=1.3e-05 Score=81.02 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=100.2
Q ss_pred CcEEEEecCcc---cccChhhHHHHHHhhhhCCcEEEEE-ecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhC
Q 010448 301 IPVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 376 (510)
Q Consensus 301 ~~~i~~~Grl~---~~Kg~~~li~a~~~l~~~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~a 376 (510)
..++++.|++. ..+.++.++++++.+ +.+++++ |.+... . ...+.++......+. ..+|..|
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~----~----~~~~~~v~~~~~~~~---~~ll~~~ 303 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ---GRRVILSRGWTELV----L----PDDRDDCFAIDEVNF---QALFRRV 303 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT---TCCEEEECTTTTCC----C----SCCCTTEEEESSCCH---HHHGGGS
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC---CCeEEEEeCCcccc----c----cCCCCCEEEeccCCh---HHHhccC
Confidence 46788889985 566777788888765 5677665 655421 0 123456777666664 3578999
Q ss_pred cEEEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhh
Q 010448 377 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 452 (510)
Q Consensus 377 dv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~ 452 (510)
|++|.- +-..+++||+++|+|+|+....+ ..+.+.+.+.|+.+. ....+.++++++|.++ ++
T Consensus 304 d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~--------~~~~~~~~l~~~i~~l-~~- 369 (416)
T 1rrv_A 304 AAVIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHD--------GPTPTFESLSAALTTV-LA- 369 (416)
T ss_dssp SEEEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECS--------SSCCCHHHHHHHHHHH-TS-
T ss_pred CEEEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCC--------CCCCCHHHHHHHHHHh-hC-
Confidence 999963 34569999999999999976543 444566667888761 0224789999999999 76
Q ss_pred CHHHHHHHHHHHhhccCChHHHHHHHHHHH-HHHHH
Q 010448 453 GTQALAEMMKNGMAQDLSWKGPAKKWEETL-LNLEV 487 (510)
Q Consensus 453 ~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y-~~l~~ 487 (510)
++.+.++.+.+ +.+....-. +..+.+ +.+++
T Consensus 370 -~~~~~~~~~~~--~~~~~~~~~-~~~~~i~e~~~~ 401 (416)
T 1rrv_A 370 -PETRARAEAVA--GMVLTDGAA-AAADLVLAAVGR 401 (416)
T ss_dssp -HHHHHHHHHHT--TTCCCCHHH-HHHHHHHHHHHC
T ss_pred -HHHHHHHHHHH--HHHhhcCcH-HHHHHHHHHHhc
Confidence 54444444332 222223333 445555 55553
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.97 E-value=0.00022 Score=77.09 Aligned_cols=179 Identities=13% Similarity=0.006 Sum_probs=123.1
Q ss_pred HHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhh--CCcEEEEEecCChhHHHHHHHHHHHCC---CceEEeccC
Q 010448 290 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP---EKARGVAKF 364 (510)
Q Consensus 290 ~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--~~~~l~i~G~g~~~~~~~~~~l~~~~~---~~v~~~~~~ 364 (510)
|..+|++. +.++++...++ .|=-...+++..++.+ |+.+|++...+.. .++.+++.+...+ .++.+....
T Consensus 514 R~~~gLp~--~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~-~~~~l~~~~~~~gi~~~r~~f~~~~ 588 (723)
T 4gyw_A 514 RSQYGLPE--DAIVYCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPAV-GEPNIQQYAQNMGLPQNRIIFSPVA 588 (723)
T ss_dssp GGGGTCCT--TSEEEECCSCG--GGCCHHHHHHHHHHHHHCSSEEEEEEETTGG-GHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred hhhcCCCC--CCEEEEeCCcc--ccCCHHHHHHHHHHHHhCCCCeEEEEeCcHH-HHHHHHHHHHhcCCCcCeEEECCCC
Confidence 56678884 45677666664 5555666666666665 7999999876542 3445556665544 378888888
Q ss_pred CHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceE-----Ec-CCceeEeccccccCCCCCccCH
Q 010448 365 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EE-GFTGFQMGSFSVDCEAVDPVDV 438 (510)
Q Consensus 365 ~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v-----~~-~~~G~l~~~~~~~~~~~~~~d~ 438 (510)
+.++.-..+..+|+++=|.-+ +-+++.+||+.+|+|||+-....+..-+ .. |-.-+ -..|.
T Consensus 589 ~~~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~------------ia~~~ 655 (723)
T 4gyw_A 589 PKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLEL------------IAKNR 655 (723)
T ss_dssp CHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGG------------BCSSH
T ss_pred CHHHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCccc------------ccCCH
Confidence 877776789999999987665 5689999999999999987643332211 11 11112 24688
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHH----HHHh-hccCChHHHHHHHHHHHHHHHHc
Q 010448 439 AAVSTTVRRALATYGTQALAEMM----KNGM-AQDLSWKGPAKKWEETLLNLEVA 488 (510)
Q Consensus 439 ~~la~~i~~ll~~~~~~~~~~~~----~~~~-~~~fs~~~~~~~~~~~y~~l~~~ 488 (510)
++..+.-.++-+|+ +.+.++. .+.. ..-|+-+..++.+++.|+++.++
T Consensus 656 ~~Y~~~a~~la~d~--~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r 708 (723)
T 4gyw_A 656 QEYEDIAVKLGTDL--EYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEH 708 (723)
T ss_dssp HHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHH
Confidence 88888888888884 3333332 2222 34699999999999999999876
No 55
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.62 E-value=0.015 Score=56.79 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=75.5
Q ss_pred HHHHHHHhCCCCCCCCcEEEEecC-cccccChh--hHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCC----Cce
Q 010448 286 KEALQAEVGLPVDRNIPVIGFIGR-LEEQKGSD--ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP----EKA 358 (510)
Q Consensus 286 ~~~~~~~~g~~~~~~~~~i~~~Gr-l~~~Kg~~--~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~----~~v 358 (510)
.+..++.+|+..+ ...+++..|. ..+.|... .+.++++.|.+.+.++++.|...+ .+..+++....+ .++
T Consensus 167 ~~~~~~~~~~~~~-~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e--~~~~~~i~~~~~~~~~~~~ 243 (348)
T 1psw_A 167 KSYTCNQFSLSSE-RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKD--HEAGNEILAALNTEQQAWC 243 (348)
T ss_dssp HHHHHHHTTCCSS-SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGG--HHHHHHHHTTSCHHHHTTE
T ss_pred HHHHHHHhCCCCC-CcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhh--HHHHHHHHHhhhhccccce
Confidence 4456677787522 3356777777 55777755 888888888766889999886542 344444443322 124
Q ss_pred E-EeccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecC
Q 010448 359 R-GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 407 (510)
Q Consensus 359 ~-~~~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~ 407 (510)
. ..+..+-.+...+++.||++|... .|..-+ |.|+|+|+|+--.
T Consensus 244 ~~l~g~~sl~e~~ali~~a~l~I~~D----sg~~Hl-Aaa~g~P~v~lfg 288 (348)
T 1psw_A 244 RNLAGETQLDQAVILIAACKAIVTND----SGLMHV-AAALNRPLVALYG 288 (348)
T ss_dssp EECTTTSCHHHHHHHHHTSSEEEEES----SHHHHH-HHHTTCCEEEEES
T ss_pred EeccCcCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEEEC
Confidence 3 334455667778999999999764 344444 9999999998653
No 56
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=96.27 E-value=0.014 Score=55.06 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=61.1
Q ss_pred cEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEe
Q 010448 302 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 381 (510)
Q Consensus 302 ~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ 381 (510)
.+++++|..+...-.+.+++++... .--.++.|.+.+. .+.+++...+.+ ++.... +. +++.++|++||++|.
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~~---~~i~vv~G~~~~~-~~~l~~~~~~~~-~v~v~~-~~-~~m~~~m~~aDlvI~ 231 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPKT---KIISIATSSSNPN-LKKLQKFAKLHN-NIRLFI-DH-ENIAKLMNESNKLII 231 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCTT---SCEEEEECTTCTT-HHHHHHHHHTCS-SEEEEE-SC-SCHHHHHHTEEEEEE
T ss_pred eEEEEECCCchhhHHHHHHHHhhcC---CCEEEEECCCchH-HHHHHHHHhhCC-CEEEEe-CH-HHHHHHHHHCCEEEE
Confidence 4667888766554344555555432 2245677877653 344555555444 465544 33 345579999999997
Q ss_pred CCCCCCccHHHHHHHHhCCCcEEecC
Q 010448 382 PSRFEPCGLIQLHAMRYGTVPIVAST 407 (510)
Q Consensus 382 ps~~E~~g~~~~Eama~G~Pvv~s~~ 407 (510)
+ .|.++.|++++|+|.|....
T Consensus 232 ~-----gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 232 S-----ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp E-----SSHHHHHHHHTTCCEEEECC
T ss_pred C-----CcHHHHHHHHcCCCEEEEeC
Confidence 3 36899999999999998653
No 57
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=95.70 E-value=0.072 Score=53.97 Aligned_cols=136 Identities=13% Similarity=-0.017 Sum_probs=81.5
Q ss_pred CcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEE
Q 010448 301 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 380 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v 380 (510)
..+++..|.+... ..+.+.+++..+.+.+.+|+++-.+.. ....-.......++++....+.+.. .+++.+++.+
T Consensus 274 ~vVyvsfGS~~~~-~~~~~~el~~~l~~~~~~flw~~~~~~-~~~lp~~~~~~~~~~~~vv~w~Pq~---~vL~h~~v~~ 348 (454)
T 3hbf_A 274 SVVYISFGSVVTP-PPHELTALAESLEECGFPFIWSFRGDP-KEKLPKGFLERTKTKGKIVAWAPQV---EILKHSSVGV 348 (454)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHHCCCEEEECCSCH-HHHSCTTHHHHTTTTEEEESSCCHH---HHHHSTTEEE
T ss_pred ceEEEecCCCCcC-CHHHHHHHHHHHHhCCCeEEEEeCCcc-hhcCCHhHHhhcCCceEEEeeCCHH---HHHhhcCcCe
Confidence 3566777877642 234455555555444667666543331 1111111122334456666666653 5899999655
Q ss_pred eCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcC-CceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 381 IPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 381 ~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~-~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+-+. +-..+++||+++|+|.|+-...+ ....+.+. +.|..+.. ..-+.+++.++|.+++++
T Consensus 349 fvtH--~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~--------~~~~~~~l~~av~~ll~~ 414 (454)
T 3hbf_A 349 FLTH--SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDN--------GVLTKESIKKALELTMSS 414 (454)
T ss_dssp EEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGG--------GSCCHHHHHHHHHHHHSS
T ss_pred EEec--CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecC--------CCCCHHHHHHHHHHHHCC
Confidence 5554 34568999999999999986533 22344453 67776610 124789999999999976
No 58
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=95.57 E-value=0.044 Score=55.69 Aligned_cols=132 Identities=11% Similarity=-0.033 Sum_probs=77.6
Q ss_pred CcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEE-ecCC-hhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hC
Q 010448 301 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL-GTGK-KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GA 376 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~-G~g~-~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~a 376 (510)
..+++..|.+... ..+.+.+++..+.+.+.+++++ |... +.+.+.+.+ ..+.++....+.+.. .+|+ ++
T Consensus 272 ~vv~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~~~---~~~~~~~v~~w~pq~---~vL~h~~~ 344 (456)
T 2c1x_A 272 SVVYISFGTVTTP-PPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLE---KTRGYGMVVPWAPQA---EVLAHEAV 344 (456)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTHHH---HHTTTEEEESCCCHH---HHHTSTTE
T ss_pred ceEEEecCccccC-CHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHHHh---hcCCceEEecCCCHH---HHhcCCcC
Confidence 4567777777643 2344444444444335665544 4332 111111111 122346555555653 4788 67
Q ss_pred cEEEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEEcC-CceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 377 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 377 dv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~~~-~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|++|. -+-..+++||+++|+|+|+-...+ ....+.+. +.|..+.. ..-+.++++++|.+++++
T Consensus 345 ~~fvt----h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~--------~~~~~~~l~~~i~~ll~~ 412 (456)
T 2c1x_A 345 GAFVT----HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEG--------GVFTKSGLMSCFDQILSQ 412 (456)
T ss_dssp EEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGG--------GSCCHHHHHHHHHHHHHS
T ss_pred CEEEe----cCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecC--------CCcCHHHHHHHHHHHHCC
Confidence 78772 245678999999999999986532 22344455 67776510 123789999999999987
No 59
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=95.19 E-value=0.087 Score=56.98 Aligned_cols=197 Identities=11% Similarity=0.095 Sum_probs=106.4
Q ss_pred HHhccceeecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCC-CC-CCCCCccccccCCCcCChhhchHHHHHHHH
Q 010448 213 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDV-QE-WNPLTDKYIGVKYDASTVMDAKPLLKEALQ 290 (510)
Q Consensus 213 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (510)
....|.+++.|+...+.+.+. ++.+.+ .++.-|..- +. +.. ......+..++
T Consensus 476 ~~~~D~~~~~s~~~~~~~~~~--f~~~~~--------~i~~~G~PR~D~l~~~----------------~~~~~~~~~~~ 529 (729)
T 3l7i_A 476 TSRWDYLISPNRYSTEIFRSA--FWMDEE--------RILEIGYPRNDVLVNR----------------ANDQEYLDEIR 529 (729)
T ss_dssp HTTCSEEEESSHHHHHHHHHH--TCCCGG--------GEEESCCGGGHHHHHS----------------TTCHHHHHHHH
T ss_pred hccCCEEEeCCHHHHHHHHHH--hCCCcc--------eEEEcCCCchHHHhcc----------------cchHHHHHHHH
Confidence 456899999999999888753 444422 345555421 00 100 11223456788
Q ss_pred HHhCCCCCCCCcEEEEecCccccc----C-----hhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEe
Q 010448 291 AEVGLPVDRNIPVIGFIGRLEEQK----G-----SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV 361 (510)
Q Consensus 291 ~~~g~~~~~~~~~i~~~Grl~~~K----g-----~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~ 361 (510)
++++++ .++.+|+|+-.+.... | ...-++.+.+...++..+++-. .+....... . ....+.+...
T Consensus 530 ~~~~~~--~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~--Hp~~~~~~~-~-~~~~~~~~~~ 603 (729)
T 3l7i_A 530 THLNLP--SDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRM--HYLISNALD-L-SGYENFAIDV 603 (729)
T ss_dssp HHTTCC--SSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECC--CHHHHTTCC-C-TTCTTTEEEC
T ss_pred HHhCCC--CCCeEEEEeeeeeCCccccccccccchhhHHHHHHHHcCCCeEEEEec--Ccchhcccc-c-cccCCcEEeC
Confidence 899987 4668999998876542 1 1122333433333465555433 321111110 0 1122334433
Q ss_pred ccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccceEEcCCceeEeccccccCCCCCccCHHHH
Q 010448 362 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAV 441 (510)
Q Consensus 362 ~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~l 441 (510)
..+ .++.+++..||++|- -++-+++|++..++|||-..-. ..+.. +...|+.++.. ...--.-..+.++|
T Consensus 604 ~~~--~di~~ll~~aD~lIT-----DySSv~fD~~~l~kPiif~~~D-~~~Y~-~~~rg~y~d~~-~~~pg~~~~~~~eL 673 (729)
T 3l7i_A 604 SNY--NDVSELFLISDCLIT-----DYSSVMFDYGILKRPQFFFAYD-IDKYD-KGLRGFYMNYM-EDLPGPIYTEPYGL 673 (729)
T ss_dssp TTC--SCHHHHHHTCSEEEE-----SSCTHHHHHGGGCCCEEEECTT-TTTTT-SSCCSBSSCTT-SSSSSCEESSHHHH
T ss_pred CCC--cCHHHHHHHhCEEEe-----echHHHHhHHhhCCCEEEecCC-HHHHh-hccCCcccChh-HhCCCCeECCHHHH
Confidence 333 245578999999992 2577899999999999977311 11111 11133332100 00000023688999
Q ss_pred HHHHHHHHHh
Q 010448 442 STTVRRALAT 451 (510)
Q Consensus 442 a~~i~~ll~~ 451 (510)
.++|......
T Consensus 674 ~~~i~~~~~~ 683 (729)
T 3l7i_A 674 AKELKNLDKV 683 (729)
T ss_dssp HHHHTTHHHH
T ss_pred HHHHhhhhcc
Confidence 9999888764
No 60
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=94.89 E-value=0.15 Score=52.10 Aligned_cols=133 Identities=6% Similarity=-0.082 Sum_probs=78.9
Q ss_pred CcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC-----h-hHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH
Q 010448 301 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-----K-PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 374 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~-----~-~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 374 (510)
..+++..|.+.. ...+.+.+++..+.+.+.+++++-..+ . .+.+.+.+ ..+.++....+.+.. .+|+
T Consensus 296 ~vv~vs~GS~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~v~~~~pq~---~~L~ 368 (482)
T 2pq6_A 296 SVVYVNFGSTTV-MTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTN---EIADRGLIASWCPQD---KVLN 368 (482)
T ss_dssp CEEEEECCSSSC-CCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHH---HHTTTEEEESCCCHH---HHHT
T ss_pred ceEEEecCCccc-CCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHH---hcCCCEEEEeecCHH---HHhc
Confidence 356677777652 233444455555544567776653211 0 01122221 223456666666654 3787
Q ss_pred hCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceEE-cCCceeEeccccccCCCCCccCHHHHHHHHHHHH
Q 010448 375 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 449 (510)
Q Consensus 375 ~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v~-~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll 449 (510)
.+++.++-+. +-..+++||+++|+|+|+-...+ ....+. +-+.|+.+. ..-+.++++++|.+++
T Consensus 369 h~~~~~~vth--~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~---------~~~~~~~l~~~i~~ll 437 (482)
T 2pq6_A 369 HPSIGGFLTH--CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID---------TNVKREELAKLINEVI 437 (482)
T ss_dssp STTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC---------SSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEec--CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC---------CCCCHHHHHHHHHHHH
Confidence 7666333333 45678999999999999987543 222333 456777651 2247899999999999
Q ss_pred Hh
Q 010448 450 AT 451 (510)
Q Consensus 450 ~~ 451 (510)
++
T Consensus 438 ~~ 439 (482)
T 2pq6_A 438 AG 439 (482)
T ss_dssp TS
T ss_pred cC
Confidence 87
No 61
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=94.71 E-value=0.23 Score=48.34 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=75.7
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccCh--hhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCce-EEeccC
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKA-RGVAKF 364 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~--~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v-~~~~~~ 364 (510)
.+.+..|+..+ ...+++..|.-.+.|.. +.+.++++.|.+.+.+++++|... ..+..+++....+.++ ...+..
T Consensus 174 ~~l~~~g~~~~-~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~--e~~~~~~i~~~~~~~~~~l~g~~ 250 (349)
T 3tov_A 174 EFYSSHGLTDT-DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPM--DLEMVQPVVEQMETKPIVATGKF 250 (349)
T ss_dssp HHHHHTTCCTT-CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTT--THHHHHHHHHTCSSCCEECTTCC
T ss_pred HHHHHcCCCCC-CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcc--hHHHHHHHHHhcccccEEeeCCC
Confidence 34455676532 23566667765566654 578888888876678888888654 2445555555544333 333455
Q ss_pred CHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCcc
Q 010448 365 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV 411 (510)
Q Consensus 365 ~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~ 411 (510)
+-.+...+++.||++|..- .|..-+ |.|+|+|+|+--.+..+
T Consensus 251 sl~e~~ali~~a~~~i~~D----sG~~Hl-Aaa~g~P~v~lfg~t~p 292 (349)
T 3tov_A 251 QLGPLAAAMNRCNLLITND----SGPMHV-GISQGVPIVALYGPSNP 292 (349)
T ss_dssp CHHHHHHHHHTCSEEEEES----SHHHHH-HHTTTCCEEEECSSCCH
T ss_pred CHHHHHHHHHhCCEEEECC----CCHHHH-HHhcCCCEEEEECCCCc
Confidence 6667778999999999652 355555 89999999997544433
No 62
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=94.40 E-value=0.43 Score=48.67 Aligned_cols=136 Identities=7% Similarity=-0.108 Sum_probs=78.1
Q ss_pred CcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEE-ecCC-------------hh----HHHHHHHHHHHCCCc-eEEe
Q 010448 301 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL-GTGK-------------KP----MEKQLEQLEILYPEK-ARGV 361 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~-G~g~-------------~~----~~~~~~~l~~~~~~~-v~~~ 361 (510)
..+++..|.+.. ...+.+.+++..+.+.+.+++++ |.+. .. +.+.+.+ +..++ +...
T Consensus 269 ~vvyvs~GS~~~-~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~g~~v~ 344 (480)
T 2vch_A 269 SVLYVSFGSGGT-LTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLE---RTKKRGFVIP 344 (480)
T ss_dssp CEEEEECTTTCC-CCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHH---HTTTTEEEEE
T ss_pred ceEEEecccccC-CCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHH---HhCCCeEEEe
Confidence 467778888753 23455555555555556777665 3321 00 1111111 11222 2333
Q ss_pred ccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccceE-EcCCceeEeccccccCCCCCcc
Q 010448 362 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSFSVDCEAVDPV 436 (510)
Q Consensus 362 ~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~v-~~~~~G~l~~~~~~~~~~~~~~ 436 (510)
.+.+.. .+|+.+++.++-+. +-..+++||+++|+|+|+-...+ ....+ +.-+.|+.+..... ..-
T Consensus 345 ~w~Pq~---~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~-----~~~ 414 (480)
T 2vch_A 345 FWAPQA---QVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDD-----GLV 414 (480)
T ss_dssp SCCCHH---HHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTT-----SCC
T ss_pred CccCHH---HHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccC-----Ccc
Confidence 355544 58999996544444 44568999999999999987542 22333 45567776510000 024
Q ss_pred CHHHHHHHHHHHHH
Q 010448 437 DVAAVSTTVRRALA 450 (510)
Q Consensus 437 d~~~la~~i~~ll~ 450 (510)
+.++++++|.++++
T Consensus 415 ~~~~l~~av~~vl~ 428 (480)
T 2vch_A 415 RREEVARVVKGLME 428 (480)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 78999999999997
No 63
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=93.85 E-value=0.65 Score=47.06 Aligned_cols=137 Identities=11% Similarity=0.024 Sum_probs=76.7
Q ss_pred CcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC-hhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCc
Q 010448 301 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GAD 377 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~-~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~ad 377 (510)
..+++..|.+...-+.+.+.+++..+.+.+.+++++-... +.+.+.+.+.... +.++....+.+.. .+|+ ++|
T Consensus 277 ~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~v~~w~pq~---~vL~h~~~~ 352 (463)
T 2acv_A 277 SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL-EGKGMICGWAPQV---EVLAHKAIG 352 (463)
T ss_dssp CEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHHHH-HCSEEEESSCCHH---HHHHSTTEE
T ss_pred ceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCCcccCChhHHHhhcc-CCCEEEEccCCHH---HHhCCCccC
Confidence 4567777877622233444444444444466766554322 1111112111100 1345555555644 3676 677
Q ss_pred EEEeCCCCCCccHHHHHHHHhCCCcEEecCCC----ccce-EEcCCceeEe-ccccccCCCCC--ccCHHHHHHHHHHHH
Q 010448 378 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDT-VEEGFTGFQM-GSFSVDCEAVD--PVDVAAVSTTVRRAL 449 (510)
Q Consensus 378 v~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg----~~e~-v~~~~~G~l~-~~~~~~~~~~~--~~d~~~la~~i~~ll 449 (510)
++|. -+-..+++||+++|+|+|+-...+ .... ++.-+.|+.+ ..+. -. .-+.++++++|.+++
T Consensus 353 ~fvt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~-----~~~~~~~~~~l~~ai~~ll 423 (463)
T 2acv_A 353 GFVS----HCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR-----KGSDVVAAEEIEKGLKDLM 423 (463)
T ss_dssp EEEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCC-----TTCCCCCHHHHHHHHHHHT
T ss_pred eEEe----cCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccC-----CCCccccHHHHHHHHHHHH
Confidence 7773 245678999999999999987532 2233 3555677765 1000 01 247899999999999
Q ss_pred H
Q 010448 450 A 450 (510)
Q Consensus 450 ~ 450 (510)
+
T Consensus 424 ~ 424 (463)
T 2acv_A 424 D 424 (463)
T ss_dssp C
T ss_pred h
Confidence 6
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=92.03 E-value=1.2 Score=42.59 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=66.9
Q ss_pred CcEEEEecCcccccCh--hhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcE
Q 010448 301 IPVIGFIGRLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 378 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~--~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv 378 (510)
..+++..|.-.+.|.. +.+.+.++.|.+.+.++++.+.++. ..+..+++....+. +...+..+-.+...+++.||+
T Consensus 179 ~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~-e~~~~~~i~~~~~~-~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 179 EYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPH-EEERAKRLAEGFAY-VEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp SEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHH-HHHHHHHHHTTCTT-EEECCCCCHHHHHHHHHTCSE
T ss_pred CEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHH-HHHHHHHHHhhCCc-ccccCCCCHHHHHHHHHhCCE
Confidence 4566777766666764 4888888888766888888743332 23445555544443 444555666777789999999
Q ss_pred EEeCCCCCCccHHHHHHHHhCCCcEEec
Q 010448 379 ILIPSRFEPCGLIQLHAMRYGTVPIVAS 406 (510)
Q Consensus 379 ~v~ps~~E~~g~~~~Eama~G~Pvv~s~ 406 (510)
+|..- .|..=+ |.|+|+|+|+--
T Consensus 257 ~I~~D----SG~~Hl-Aaa~g~P~v~lf 279 (326)
T 2gt1_A 257 VVSVD----TGLSHL-TAALDRPNITVY 279 (326)
T ss_dssp EEEES----SHHHHH-HHHTTCCEEEEE
T ss_pred EEecC----CcHHHH-HHHcCCCEEEEE
Confidence 99553 355555 778999999874
No 65
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=88.12 E-value=0.59 Score=42.17 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHH-hCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCC
Q 010448 367 PLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 408 (510)
Q Consensus 367 ~~~~~~~~-~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~g 408 (510)
+++..+|+ .||++|.= +-..+++|++++|+|.|.-...
T Consensus 123 ~~m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 123 TKMQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp SSHHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCS
T ss_pred chHHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCc
Confidence 34456899 99999943 4567999999999999987654
No 66
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=71.92 E-value=34 Score=26.89 Aligned_cols=109 Identities=12% Similarity=0.114 Sum_probs=67.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh-----CCC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 401 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~-----G~P 401 (510)
..+++|+.+.. .....+.......+-.+.. .-+.+..-..+. ..|++++-... +.-|..+++.+.. .+|
T Consensus 6 ~~~iLivdd~~-~~~~~l~~~l~~~g~~v~~--~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 6 RPRILICEDDP-DIARLLNLMLEKGGFDSDM--VHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CSEEEEECSCH-HHHHHHHHHHHHTTCEEEE--ECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCEEEEcCCH-HHHHHHHHHHHHCCCeEEE--ECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 45677777554 2444555555554433322 223343333333 35888876554 5567788877654 677
Q ss_pred cEEecCCCc----c-ceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 402 PIVASTGGL----V-DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 402 vv~s~~gg~----~-e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+|......- . +.+..|..+++. .|-+.++|.++|..+++.
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLE----------KPIDENLLILSLHRAIDN 127 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEEC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEe----------CCCCHHHHHHHHHHHHHh
Confidence 776543321 1 344456788887 899999999999999886
No 67
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=68.84 E-value=52 Score=28.57 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=65.8
Q ss_pred cChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEecc----------------CC-HHHHHHHHHhC
Q 010448 314 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK----------------FN-IPLAHMIIAGA 376 (510)
Q Consensus 314 Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~----------------~~-~~~~~~~~~~a 376 (510)
.+.+..-+..+.|.+.++.++ .|.+. .+.....+-+.+.++.++.... .. .+-...+...|
T Consensus 42 ~~~~~A~~lg~~LA~~G~~vV-sGg~~-GiM~aa~~gAl~~GG~~iGVlP~e~~~~~~~~~~~~~~~~f~~Rk~~m~~~s 119 (195)
T 1rcu_A 42 ELRDICLELGRTLAKKGYLVF-NGGRD-GVMELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDFQMRSFVLLRNA 119 (195)
T ss_dssp GGHHHHHHHHHHHHHTTCEEE-ECCSS-HHHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCEEE-eCCHH-HHHHHHHHHHHHcCCcEEEEeCCcccCCCCcceeeecCCCHHHHHHHHHHhC
Confidence 555666666666666666654 47433 3444444444443333322211 11 11222367788
Q ss_pred cEEEeCCCCCCccH--HHHHHHHhCCCcEEecCCCcc-ceEEcC-Cce-eEeccccccCCCCCccCHHHHHHHHHHH
Q 010448 377 DFILIPSRFEPCGL--IQLHAMRYGTVPIVASTGGLV-DTVEEG-FTG-FQMGSFSVDCEAVDPVDVAAVSTTVRRA 448 (510)
Q Consensus 377 dv~v~ps~~E~~g~--~~~Eama~G~Pvv~s~~gg~~-e~v~~~-~~G-~l~~~~~~~~~~~~~~d~~~la~~i~~l 448 (510)
|.+|... -++|. .+.||+..++||++-+..|.. +.+..- ..| ++-.. ..+ .+.-.+|++++.+.|.+.
T Consensus 120 da~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~-~~~-~i~~~~~~ee~~~~l~~~ 192 (195)
T 1rcu_A 120 DVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNR-RIV-EIHQAWTVEEAVQIIEQI 192 (195)
T ss_dssp SEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTT-CCS-CEEEESSHHHHHHHHHTC
T ss_pred CEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHH-HcC-eEEEeCCHHHHHHHHHHH
Confidence 9887643 23555 378899999999999754432 222210 122 21000 000 001357888888877543
No 68
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=64.07 E-value=47 Score=31.43 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=78.5
Q ss_pred HHHhcccee--ecCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHH
Q 010448 212 GILESDMVL--TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 289 (510)
Q Consensus 212 ~~~~ad~vi--~vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (510)
.-+.+|.|+ +.++...+.+.+. ..+-|| |+-| +...|.. .-.+--.+
T Consensus 100 Ls~~~D~iviR~~~~~~~~~lA~~-------------~~vPVI-Nag~-~~~HPtQ----------------aLaDl~Ti 148 (323)
T 3gd5_A 100 LGRYVDGLAIRTFAQTELEEYAHY-------------AGIPVI-NALT-DHEHPCQ----------------VVADLLTI 148 (323)
T ss_dssp HTTTCSEEEEECSSHHHHHHHHHH-------------HCSCEE-EEEC-SSCCHHH----------------HHHHHHHH
T ss_pred HHHhCCEEEEecCChhHHHHHHHh-------------CCCCEE-eCCC-CCCCcHH----------------HHHHHHHH
Confidence 344688877 4556666666541 134444 6666 5666632 11223356
Q ss_pred HHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEeccCC
Q 010448 290 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFN 365 (510)
Q Consensus 290 ~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~~~~ 365 (510)
++++|-- +...|.|+|-+ ..=...++.++..+ ++++.++++.. +.+.+.+++.+.+.+..+.... +
T Consensus 149 ~e~~g~l---~glkva~vGD~--~rva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~--d 218 (323)
T 3gd5_A 149 RENFGRL---AGLKLAYVGDG--NNVAHSLLLGCAKV---GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILR--D 218 (323)
T ss_dssp HHHHSCC---TTCEEEEESCC--CHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEES--C
T ss_pred HHHhCCC---CCCEEEEECCC--CcHHHHHHHHHHHc---CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEC--C
Confidence 6777732 33789999998 23355667777666 78999999742 3455556666666554454332 2
Q ss_pred HHHHHHHHHhCcEEEeCCC
Q 010448 366 IPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 366 ~~~~~~~~~~adv~v~ps~ 384 (510)
+.+.+..+|++.....
T Consensus 219 ---~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 219 ---PFEAARGAHILYTDVW 234 (323)
T ss_dssp ---HHHHHTTCSEEEECCC
T ss_pred ---HHHHhcCCCEEEEece
Confidence 2357899999987754
No 69
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=62.79 E-value=42 Score=26.60 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=63.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh-----CCC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 401 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~-----G~P 401 (510)
..+++|+.+... ....+.......+-.+. ..-+.+.....+. ..|++++-... +.-|..+++.+.. .+|
T Consensus 8 ~~~iLivd~~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 8 WWRIMLVDTQLP-ALAASISALSQEGFDII--QCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp CEEEEEECTTGG-GGHHHHHHHHHHTEEEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CceEEEEeCCHH-HHHHHHHHHHHcCCeEE--EeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 467777776542 22233333333232233 2223333333333 46888876544 4567778877764 577
Q ss_pred cEEecCCCcc----ceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 402 PIVASTGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 402 vv~s~~gg~~----e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+|+.....-. +.+..|..+++. .|-+.++|..+|..++..
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIA----------KPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 7754332222 234467888987 899999999999998876
No 70
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=58.26 E-value=11 Score=34.84 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=31.2
Q ss_pred HHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCccc
Q 010448 369 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 412 (510)
Q Consensus 369 ~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~e 412 (510)
+.+++..+|+++--+..+..--.+..++..|+|+|+..+|...+
T Consensus 67 l~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~ 110 (272)
T 4f3y_A 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEP 110 (272)
T ss_dssp HHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 34567899999977754443344567889999999977765433
No 71
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=56.59 E-value=71 Score=25.64 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=67.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH-----hCCC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTV 401 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama-----~G~P 401 (510)
..+++|+.+.+ .....+.+.....+-.+. ..-+.+..-..+. ..|++++-... +.-|..+++.+. ..+|
T Consensus 7 ~~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 7 AGEILIVEDSP-TQAEHLKHILEETGYQTE--HVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCcEEEEeCCH-HHHHHHHHHHHHCCCEEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 46777777654 244455555555443332 2234444434444 35788776554 456777777765 3567
Q ss_pred cEEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 402 PIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 402 vv~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+|+.....- .+.+..|..+++. .|-+.+++..+|..+++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFIT----------KPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 775433222 2334457888988 899999999999999886
No 72
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=56.49 E-value=69 Score=25.01 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=65.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh-----CCCc
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVP 402 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~-----G~Pv 402 (510)
.+++|+.+.+ .....+..+....+-.+. ..-+.+..-..+. ..|++++-... +.-|..+++.+.. .+|+
T Consensus 5 ~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 5 HTLLIVDDDD-TVAEMLELVLRGAGYEVR--RAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHHCCCEEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 4666666544 344455555555443333 2234444333443 35888875544 4567777776643 5677
Q ss_pred EEecCCCcc----ceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 403 IVASTGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 403 v~s~~gg~~----e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|.....+-. +.+..|..+|+. .|-+.++|..+|..++..
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLA----------KPFEPQELVYRVKNILAR 124 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEE----------TTCCHHHHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHHHHhcCcceEEe----------CCCCHHHHHHHHHHHHhc
Confidence 754432222 234567888988 899999999999998875
No 73
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=56.39 E-value=71 Score=25.09 Aligned_cols=111 Identities=10% Similarity=0.018 Sum_probs=69.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC-CCccHHHHHHHHh-----CCC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTV 401 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~-E~~g~~~~Eama~-----G~P 401 (510)
..+++|+.+.. .....+.......+.........+.+.....+.. .|++++-... +.-|..+++.+.. .+|
T Consensus 5 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 5 SKRVLVVEDNP-DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 45777777654 3455566665555544222233344444444443 5788876554 4467778877754 577
Q ss_pred cEEecCCCcc----ceEEcCCceeEeccccccCCCCCcc-CHHHHHHHHHHHHHh
Q 010448 402 PIVASTGGLV----DTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 451 (510)
Q Consensus 402 vv~s~~gg~~----e~v~~~~~G~l~~~~~~~~~~~~~~-d~~~la~~i~~ll~~ 451 (510)
+|+.....-. +.+..|..+++. .|. +.+++.++|..+++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 84 IVILTDNVSDDRAKQCMAAGASSVVD----------KSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp EEEEETTCCHHHHHHHHHTTCSEEEE----------CCTTSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEE----------CCCCcHHHHHHHHHHHHHH
Confidence 7765433222 234567888987 888 999999999988875
No 74
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=54.83 E-value=79 Score=25.14 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=67.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCC--ceEEeccCCHHHHHHHHH-----------hCcEEEeCCCC-CCccHHHHHH
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPE--KARGVAKFNIPLAHMIIA-----------GADFILIPSRF-EPCGLIQLHA 395 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~--~v~~~~~~~~~~~~~~~~-----------~adv~v~ps~~-E~~g~~~~Ea 395 (510)
..+++|+.+.+ .....++......+. .+.. ..+.++.-..+. ..|++++-... +.-|..+++.
T Consensus 4 ~~~ILivddd~-~~~~~l~~~L~~~g~~~~v~~--~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~ 80 (152)
T 3heb_A 4 SVTIVMIEDDL-GHARLIEKNIRRAGVNNEIIA--FTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKL 80 (152)
T ss_dssp -CEEEEECCCH-HHHHHHHHHHHHTTCCCCEEE--ESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHH
T ss_pred CceEEEEeCCH-HHHHHHHHHHHhCCCcceEEE--eCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHH
Confidence 35777777654 345556666565553 3332 234444444552 46888876544 5567888887
Q ss_pred HHh-----CCCcEEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 396 MRY-----GTVPIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 396 ma~-----G~Pvv~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+.. .+|+|+.....- .+.+..|..+++. .|-+.++|.++|.++...
T Consensus 81 lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYIT----------KPVNYENFANAIRQLGLF 135 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred HHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 765 567775543322 2334557788987 899999999999888653
No 75
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=54.69 E-value=67 Score=24.96 Aligned_cols=106 Identities=12% Similarity=0.216 Sum_probs=57.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCCCCccHHHHHHHHh---CCCcEE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRFEPCGLIQLHAMRY---GTVPIV 404 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~E~~g~~~~Eama~---G~Pvv~ 404 (510)
..+++|+.+.. .....+.......+-.+. ..-+.+.....+. ..|++++| +.-|..+++.+.. .+|+|.
T Consensus 18 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ 91 (137)
T 2pln_A 18 SMRVLLIEKNS-VLGGEIEKGLNVKGFMAD--VTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLV 91 (137)
T ss_dssp CSEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHHcCcEEE--EeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEE
Confidence 45666666543 233444444444332333 2223333323333 35777722 3346666665543 677775
Q ss_pred ecCCC----ccceEEcCCceeEeccccccCCCCCcc-CHHHHHHHHHHHHHh
Q 010448 405 ASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 451 (510)
Q Consensus 405 s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~-d~~~la~~i~~ll~~ 451 (510)
..... ..+.+..|..+++. .|- +.++|..+|..++..
T Consensus 92 ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 92 SSDNPTSEEEVHAFEQGADDYIA----------KPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEE----------SSCSCHHHHHHHHHHHTC-
T ss_pred EeCCCCHHHHHHHHHcCCceeee----------CCCCCHHHHHHHHHHHHhh
Confidence 43222 22334457788887 888 999999999887653
No 76
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=53.24 E-value=43 Score=28.55 Aligned_cols=125 Identities=10% Similarity=-0.046 Sum_probs=66.9
Q ss_pred ccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHH-HHH-----------------HHHH
Q 010448 313 QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIP-LAH-----------------MIIA 374 (510)
Q Consensus 313 ~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~-~~~-----------------~~~~ 374 (510)
..+.+..-+..+.|.+.++.++ .|.+...+.....+-+.+.++.+....+-... ..+ .+..
T Consensus 28 ~~~~~~A~~lg~~La~~g~~lV-sGGg~~Gim~aa~~gAl~~gG~tigVlP~~~~~~~~~~~~~~i~~~~~~~Rk~~m~~ 106 (176)
T 2iz6_A 28 ENQLVMANELGKQIATHGWILL-TGGRSLGVMHEAMKGAKEAGGTTIGVLPGPDTSEISDAVDIPIVTGLGSARDNINAL 106 (176)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEE-EECSSSSHHHHHHHHHHHTTCCEEEEECC-----CCTTCSEEEECCCCSSSCCCCGG
T ss_pred HHHHHHHHHHHHHHHHCCCEEE-ECCCccCHhHHHHHHHHHcCCEEEEEeCchhhhhhccCCceeEEcCCHHHHHHHHHH
Confidence 4445555555555555566654 55452235555555555555555444321111 111 1344
Q ss_pred hCcEEEeCCCCCCccH--HHHHHHHhCCCcEEecCCCccc-eEEcC-CceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 375 GADFILIPSRFEPCGL--IQLHAMRYGTVPIVASTGGLVD-TVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 375 ~adv~v~ps~~E~~g~--~~~Eama~G~Pvv~s~~gg~~e-~v~~~-~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
.||.+|.-. -++|. .+.|++..++||++-+..+..+ ++.+. ...+. ..+|++++.+.|.+.++
T Consensus 107 ~sda~Ivlp--Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~-----------~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 107 SSNVLVAVG--MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVH-----------VAADVAGAIAAVKQLLA 173 (176)
T ss_dssp GCSEEEEES--CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEE-----------EESSHHHHHHHHHHHHH
T ss_pred hCCEEEEec--CCccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEE-----------EcCCHHHHHHHHHHHHH
Confidence 566665432 13554 4788999999999998633111 11111 22233 46889999999888765
Q ss_pred h
Q 010448 451 T 451 (510)
Q Consensus 451 ~ 451 (510)
.
T Consensus 174 ~ 174 (176)
T 2iz6_A 174 K 174 (176)
T ss_dssp C
T ss_pred h
Confidence 3
No 77
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=52.58 E-value=78 Score=24.41 Aligned_cols=110 Identities=12% Similarity=0.047 Sum_probs=66.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH---------hCcEEEeCCCC-CCccHHHHHHHH---
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---------GADFILIPSRF-EPCGLIQLHAMR--- 397 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---------~adv~v~ps~~-E~~g~~~~Eama--- 397 (510)
.+++|+.+.. ...+.+.......+........-+.+.....+. ..|++++-... +..|..+++.+.
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 3 KKIFLVEDNK-ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CEEEEECCCH-HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CeEEEEeCCH-HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 4667777554 344555555555543112222234444444554 46888876554 446777777665
Q ss_pred --hCCCcEEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 398 --YGTVPIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 398 --~G~Pvv~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
..+|+|....... .+.+..|..+++. .|-+.+++..+|..+++.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYIT----------KSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheec----------CCCCHHHHHHHHHHHHHH
Confidence 3567775533222 2334457788887 899999999999988765
No 78
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=52.57 E-value=19 Score=30.32 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=25.9
Q ss_pred HHHHhCcEEEeCCC-CCCccHHHHH---HHHhCCCcEEec
Q 010448 371 MIIAGADFILIPSR-FEPCGLIQLH---AMRYGTVPIVAS 406 (510)
Q Consensus 371 ~~~~~adv~v~ps~-~E~~g~~~~E---ama~G~Pvv~s~ 406 (510)
..+..||++|.--. .++-.-+.+| |.+.|+||++-.
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~ 104 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALY 104 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 37999999887543 3444555555 789999999874
No 79
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=51.85 E-value=81 Score=24.41 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=65.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHH--HhCcEEEeCCCC-CCccHHHHHHHHh---CCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRY---GTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~adv~v~ps~~-E~~g~~~~Eama~---G~Pvv 403 (510)
..+++|+.+... ....+.+.....+..+.... +.+.....+ ...|++++-... +.-|..+++.+.. .+|+|
T Consensus 7 ~~~ilivdd~~~-~~~~l~~~L~~~~~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 7 ALKILIVEDDTD-AREWLSTIISNHFPEVWSAG--DGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp CCCEEEECSCHH-HHHHHHHHHHTTCSCEEEES--SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred ccEEEEEeCCHH-HHHHHHHHHHhcCcEEEEEC--CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 467778876542 34445554444332343222 333333333 346888876554 4567777776654 56676
Q ss_pred EecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+.....- .+.+..|..+++. .|-+.+++.++|.++++.
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLP----------KPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEc----------CCCCHHHHHHHHHHHHHH
Confidence 5543222 2334557788877 899999999999999875
No 80
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=51.75 E-value=83 Score=24.50 Aligned_cols=110 Identities=6% Similarity=0.020 Sum_probs=65.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC-CCccHHHHHHHHh-----CC
Q 010448 329 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GT 400 (510)
Q Consensus 329 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~-E~~g~~~~Eama~-----G~ 400 (510)
...+++|+.+.. ...+.+.......+-.+. ..-+.++....+.. .|++++-... +..|..+++.+.. .+
T Consensus 6 ~~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 6 HKGDVMIVDDDA-HVRIAVKTILSDAGFHII--SADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp CCCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCeEEEEcCCH-HHHHHHHHHHHHCCeEEE--EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 356777777654 244455555555443333 22334444344443 5777765544 4467777777754 46
Q ss_pred CcEEecCC----CccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 401 VPIVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 401 Pvv~s~~g----g~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|+|+.... ...+.+..|..+++. .|-+.+++.++|..++..
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYIT----------KPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 66654322 222334456678887 889999999999988874
No 81
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=51.46 E-value=84 Score=24.47 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=59.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHH--HhCcEEEeCCCC-CCccHHHHHHHH-----hCCCc
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMR-----YGTVP 402 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~adv~v~ps~~-E~~g~~~~Eama-----~G~Pv 402 (510)
.+++|+.+.. .....+.++.... ..+.. ..+.++.-..+ ...|++++-... +.-|..+++.+. ..+|+
T Consensus 4 ~~iLivdd~~-~~~~~l~~~l~~~-~~v~~--~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 4 KKILIIDQQD-FSRIELKNFLDSE-YLVIE--SKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CEEEEECSCH-HHHHHHHHHHTTT-SEEEE--ESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHhc-ceEEE--eCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 4566666544 2344444444433 22322 22333333333 345888776544 445666666654 46777
Q ss_pred EEecCC----CccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 403 IVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 403 v~s~~g----g~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|..... ...+.+..|..+++. .|-+.+++.++|..++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLT----------KPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeee----------CCCCHHHHHHHHHHHHhh
Confidence 754322 223344557788887 899999999999998875
No 82
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=51.02 E-value=86 Score=24.47 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=67.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH----hCcEEEeCCCC-CCccHHHHHHHHh---CCCc
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA----GADFILIPSRF-EPCGLIQLHAMRY---GTVP 402 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~adv~v~ps~~-E~~g~~~~Eama~---G~Pv 402 (510)
.+++|+.+.+ ...+.+.......+..+. ..-+.+.....+. ..|++++-... +.-|..+++.+.. .+|+
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 4 AKILVIDDES-TILQNIKFLLEIDGNEVL--TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred CEEEEEcCCH-HHHHHHHHHHHhCCceEE--EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeE
Confidence 4677777654 345555665555553343 2233444434444 56888876544 4567777665543 5677
Q ss_pred EEecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 403 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 403 v~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|...... ..+.+..|..+++. .|-+.+++..+|..+++.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLR----------KPVTAQDLSIAINNAINR 123 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEe----------CCCCHHHHHHHHHHHHHH
Confidence 6543322 22345567888988 899999999999999875
No 83
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=50.41 E-value=97 Score=24.87 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=61.7
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH----hCcEEEeCCCC-CCccHHHHHHHH---hCCCc
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA----GADFILIPSRF-EPCGLIQLHAMR---YGTVP 402 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~adv~v~ps~~-E~~g~~~~Eama---~G~Pv 402 (510)
.+++|+.+.. ...+.++.+..+.+-.+.. ...+.++....+. ..|++++-... +.-|..+++.+. ..+|+
T Consensus 37 ~~Ilivdd~~-~~~~~l~~~L~~~g~~v~~-~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 37 FNVLIVDDSV-FTVKQLTQIFTSEGFNIID-TAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEEE-EESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred eEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-EECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 5677776544 2344455555554433321 2223333333333 34888876554 445666666554 35777
Q ss_pred EEecCCCcc----ceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHH
Q 010448 403 IVASTGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 449 (510)
Q Consensus 403 v~s~~gg~~----e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll 449 (510)
|+.....-. +.+..|..+++. .|-+.++|.++|..++
T Consensus 115 i~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGAKTFIV----------KPLDRAKVLQRVMSVF 155 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHTT
T ss_pred EEEeccCcHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHh
Confidence 755433222 334557788887 8999999999998765
No 84
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=49.43 E-value=89 Score=24.14 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=65.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH-h--CcEEEeCCCC-CCccHHHHHHHHh----CCC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA-G--ADFILIPSRF-EPCGLIQLHAMRY----GTV 401 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~--adv~v~ps~~-E~~g~~~~Eama~----G~P 401 (510)
..+++|+.+.+ .....+.+.....+-.+... .+.+.....+. . .|++++-... +.-|..+++.+.. .+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~~~--~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 7 RPLVLVVDDNA-VNREALILYLKSRGIDAVGA--DGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCCEEEE--SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCeEEEECCCH-HHHHHHHHHHHHcCceEEEe--CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 45777777654 34455555555554445432 23333333333 2 5777776544 5567888877754 366
Q ss_pred cEEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 402 PIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 402 vv~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+|......- .+.+..|..+++. .|-+.++|.++|.++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLL----------KPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHC-
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEe----------CCCCHHHHHHHHHHHhcC
Confidence 765443222 2334457888988 899999999999988875
No 85
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=49.33 E-value=87 Score=24.02 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=64.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHH-H--hCcEEEeCCCC-CCccHHHHHHHHh-----CC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII-A--GADFILIPSRF-EPCGLIQLHAMRY-----GT 400 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~-~--~adv~v~ps~~-E~~g~~~~Eama~-----G~ 400 (510)
..+++|+.+.+ ...+.++......+...... ..+....-..+ . ..|++++-... +.-|..+++.+.. .+
T Consensus 5 ~~~iLivdd~~-~~~~~l~~~L~~~g~~~v~~-~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 5 SMKLLVVDDSS-TMRRIIKNTLSRLGYEDVLE-AEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp -CCEEEECSCH-HHHHHHHHHHHHTTCCCEEE-ESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CcEEEEEeCCH-HHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 35677777654 34555555555554321222 22333332333 2 36888875544 5568888887753 56
Q ss_pred CcEEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 401 VPIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 401 Pvv~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
|+|......- .+.+..|..+++. .|-+.+++.++|..++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIV----------KPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEE----------SCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEe----------CCCCHHHHHHHHHHHhc
Confidence 7775443222 2334567889988 89999999999988875
No 86
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=47.95 E-value=1e+02 Score=24.41 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=63.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh---CCCcEE
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPIV 404 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~---G~Pvv~ 404 (510)
.+++|+.+.. ...+.+..+....+........-+.++....+. ..|++++-... +.-|..+++.+.. .+|+|.
T Consensus 21 ~~iLivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 99 (150)
T 4e7p_A 21 MKVLVAEDQS-MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVV 99 (150)
T ss_dssp EEEEEECSCH-HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred cEEEEEcCCH-HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 4666666543 234444544444332122222223343333443 35777776544 4567777776654 566665
Q ss_pred ecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 405 ASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 405 s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
..... ..+.+..|..+++. .|.+.+++.++|..+++.
T Consensus 100 ls~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKAGVDAYVL----------KERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEE----------TTSCHHHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHHCCCcEEEe----------cCCCHHHHHHHHHHHHcC
Confidence 43322 22344567888988 899999999999998875
No 87
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=47.62 E-value=61 Score=25.60 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=43.6
Q ss_pred HhCcEEEeCCCC-CCccHHHHHHHHh---CCCcEEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHH
Q 010448 374 AGADFILIPSRF-EPCGLIQLHAMRY---GTVPIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 445 (510)
Q Consensus 374 ~~adv~v~ps~~-E~~g~~~~Eama~---G~Pvv~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i 445 (510)
...|++++-... +.-|+.+++.+.. .+|+|......- .+.+..|..+++. .|-+.++|..+|
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i 135 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLR----------WPLEPRALDDAL 135 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEE----------SSCCHHHHHHHH
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEc----------CCCCHHHHHHHH
Confidence 346777765544 3346666655543 566665432221 2234456788887 899999999999
Q ss_pred HHHHHh
Q 010448 446 RRALAT 451 (510)
Q Consensus 446 ~~ll~~ 451 (510)
..+++.
T Consensus 136 ~~~~~~ 141 (146)
T 4dad_A 136 KRAAAQ 141 (146)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 988874
No 88
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=46.26 E-value=1.7e+02 Score=27.44 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=77.7
Q ss_pred HHHHHhccceee--cCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 210 KAGILESDMVLT--VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 210 ~~~~~~ad~vi~--vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+-.-+.+|.|+. .++...+.+.++ ..+-|| ||-+ +..+|.. .-.+--
T Consensus 96 rvls~~~D~iviR~~~~~~~~~lA~~-------------~~vPVI-Na~~-~~~HPtQ----------------aLaDl~ 144 (321)
T 1oth_A 96 RVLSSMADAVLARVYKQSDLDTLAKE-------------ASIPII-NGLS-DLYHPIQ----------------ILADYL 144 (321)
T ss_dssp HHHHHHCSEEEEECSCHHHHHHHHHH-------------CSSCEE-ESCC-SSCCHHH----------------HHHHHH
T ss_pred HHHHHhCCEEEEeCCChhHHHHHHHh-------------CCCCEE-cCCC-CCCCcHH----------------HHHHHH
Confidence 444456888876 566777777642 145556 5655 5566632 112234
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEecc
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAK 363 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~~ 363 (510)
.+++++|-- +...|.|+|-.. .=..-++.++..+ ++++.++|+.. +.+.+.+++.+.+.+..+...
T Consensus 145 Ti~e~~g~l---~gl~va~vGD~~--~va~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~-- 214 (321)
T 1oth_A 145 TLQEHYSSL---KGLTLSWIGDGN--NILHSIMMSAAKF---GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLT-- 214 (321)
T ss_dssp HHHHHHSCC---TTCEEEEESCSS--HHHHHHHTTTGGG---TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEE--
T ss_pred HHHHHhCCc---CCcEEEEECCch--hhHHHHHHHHHHc---CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE--
Confidence 556777732 236899999963 2234445555444 78999999742 345556666666665445433
Q ss_pred CCHHHHHHHHHhCcEEEeCC
Q 010448 364 FNIPLAHMIIAGADFILIPS 383 (510)
Q Consensus 364 ~~~~~~~~~~~~adv~v~ps 383 (510)
.+ +.+.+..+|++..-.
T Consensus 215 ~d---~~eav~~aDvvy~d~ 231 (321)
T 1oth_A 215 ND---PLEAAHGGNVLITDT 231 (321)
T ss_dssp SC---HHHHHTTCSEEEECC
T ss_pred EC---HHHHhccCCEEEEec
Confidence 22 235789999998844
No 89
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=45.35 E-value=1.6e+02 Score=26.82 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=67.0
Q ss_pred EecCccc--ccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEecc--CCHHHHHHHHHhCc-EEE
Q 010448 306 FIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK--FNIPLAHMIIAGAD-FIL 380 (510)
Q Consensus 306 ~~Grl~~--~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~--~~~~~~~~~~~~ad-v~v 380 (510)
.++-..+ ..|++.+++.+.+. .+.-+++.+-+.+....+.+.+.+++....+... -+.+.+..+.+.++ ++.
T Consensus 100 lm~Y~npv~~~g~e~f~~~~~~a---Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY 176 (267)
T 3vnd_A 100 LLLYANLVFANGIDEFYTKAQAA---GVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTY 176 (267)
T ss_dssp EEECHHHHHHHCHHHHHHHHHHH---TCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEE
T ss_pred EEecCcHHHHhhHHHHHHHHHHc---CCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 3454443 56889888888776 7888888876644445566677777654443332 25577777888886 444
Q ss_pred eCCCCCCccHH------HHHHHH-----hCCCcEEecCCCcc--c----eEEcCCceeEec
Q 010448 381 IPSRFEPCGLI------QLHAMR-----YGTVPIVASTGGLV--D----TVEEGFTGFQMG 424 (510)
Q Consensus 381 ~ps~~E~~g~~------~~Eama-----~G~Pvv~s~~gg~~--e----~v~~~~~G~l~~ 424 (510)
+.|..-..|.. +.|.+. ..+|+++ .+|+. + .+..+.+|+++|
T Consensus 177 ~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~v--GfGI~~~e~~~~~~~~gADgvVVG 235 (267)
T 3vnd_A 177 LLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLL--GFGIAEPEQVRAAIKAGAAGAISG 235 (267)
T ss_dssp ESCCCCCC--------CHHHHHHHHHTTTCCCEEE--CSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred EEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEE--ECCcCCHHHHHHHHHcCCCEEEEC
Confidence 44554322221 222222 3677776 34443 3 344678899885
No 90
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=44.51 E-value=1.1e+02 Score=23.73 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=65.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHH-CCCc-eEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh-----C
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEIL-YPEK-ARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----G 399 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~-~~~~-v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~-----G 399 (510)
..+++|+.+.+ .....+...... .+-. +... -+.+.....+. ..|++++-... +.-|..+++.+.. .
T Consensus 8 ~~~iLivdd~~-~~~~~l~~~L~~~~~~~~v~~~--~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 8 DFSILIIEDDK-EFADMLTQFLENLFPYAKIKIA--YNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHHCTTCEEEEE--CSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CceEEEEECCH-HHHHHHHHHHHhccCccEEEEE--CCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 46777777654 234445555444 4434 3222 23333333433 36888876554 4467777777654 5
Q ss_pred CCcEEec-CCCc---cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHhh
Q 010448 400 TVPIVAS-TGGL---VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 452 (510)
Q Consensus 400 ~Pvv~s~-~gg~---~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~ 452 (510)
+|+|+.. .... .+.+..|..+++. .|-+.+++.++|..++...
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFG----------KPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEe----------CCCCHHHHHHHHHHHHHhh
Confidence 6776543 2221 2334457788887 8999999999999988763
No 91
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=44.18 E-value=1.1e+02 Score=23.74 Aligned_cols=109 Identities=13% Similarity=0.154 Sum_probs=63.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh--CCCcEE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY--GTVPIV 404 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~--G~Pvv~ 404 (510)
..+++|+.+.+ .....+.......+-.+. ...+.+..-..+. ..|++++-... +..|..+++.+.. .+|+|.
T Consensus 4 ~~~Ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ 80 (136)
T 2qzj_A 4 QTKILIIDGDK-DNCQKLKGFLEEKGISID--LAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVY 80 (136)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEcCCH-HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEE
Confidence 45677777654 234445554444332332 2233343333433 35888765443 3356777776643 567765
Q ss_pred ecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 405 ASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 405 s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
..... ..+.+..|..+++. .|-+.+++..+|..++..
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLI----------KPLNLEILYAKVKAILRR 121 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHHH
Confidence 43222 22344567889988 899999999999888764
No 92
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=43.31 E-value=19 Score=33.50 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=29.3
Q ss_pred HHHHHHhCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCCCcc
Q 010448 369 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV 411 (510)
Q Consensus 369 ~~~~~~~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~gg~~ 411 (510)
+.+++..+|++|--+..+..--.+..++..|+|+|+..+|...
T Consensus 82 l~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~ 124 (288)
T 3ijp_A 82 PESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSK 124 (288)
T ss_dssp HHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCH
Confidence 3457789999996664333322345678999999987776543
No 93
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=42.84 E-value=1.4e+02 Score=27.29 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=69.1
Q ss_pred cEEEEecCcc--cccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccC--CHHHHHHHHHhCc
Q 010448 302 PVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGAD 377 (510)
Q Consensus 302 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~--~~~~~~~~~~~ad 377 (510)
++++ ++-.. ...|++.+++.+.+. .+.-+|+.+-+.+....+.+.+.+++....+...- +.+.+..+.+.+.
T Consensus 99 Pivl-m~Y~n~v~~~g~~~f~~~~~~a---GvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~ 174 (271)
T 3nav_A 99 PIGL-LMYANLVYARGIDDFYQRCQKA---GVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGK 174 (271)
T ss_dssp CEEE-EECHHHHHHTCHHHHHHHHHHH---TCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCC
T ss_pred CEEE-EecCcHHHHHhHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCC
Confidence 3443 45444 356888888888776 78888888766444556777777777555544433 4566667777775
Q ss_pred EEEeC-CCC--CC----ccHHHHHHHH-----hCCCcEEecCCCcc--c----eEEcCCceeEec
Q 010448 378 FILIP-SRF--EP----CGLIQLHAMR-----YGTVPIVASTGGLV--D----TVEEGFTGFQMG 424 (510)
Q Consensus 378 v~v~p-s~~--E~----~g~~~~Eama-----~G~Pvv~s~~gg~~--e----~v~~~~~G~l~~ 424 (510)
-|+.. |.. .| ++..+.|.+. ..+|+++ .+|+. + .+..+..|.++|
T Consensus 175 gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v--GfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 175 GYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALL--GFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp SCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEE--CSSCCSHHHHHHHHHTTCSEEEES
T ss_pred CeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEE--ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 44443 443 22 3333333332 3678776 34442 2 344678899885
No 94
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=42.71 E-value=1.2e+02 Score=23.64 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=67.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH---hCcEEEeCCCC-C-CccHHHHHHHH--hCCCc
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---GADFILIPSRF-E-PCGLIQLHAMR--YGTVP 402 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---~adv~v~ps~~-E-~~g~~~~Eama--~G~Pv 402 (510)
..+++|+.+.+ .....+.......+-.+. ...+.+..-..+. ..|++++-... + .-|..+++.+. ..+|+
T Consensus 5 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~i 81 (140)
T 3h5i_A 5 DKKILIVEDSK-FQAKTIANILNKYGYTVE--IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPV 81 (140)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCE
T ss_pred CcEEEEEeCCH-HHHHHHHHHHHHcCCEEE--EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCE
Confidence 45677777654 344555555555543343 2334444444553 35888876554 4 56777766654 36787
Q ss_pred EEecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 403 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 403 v~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|...... ..+.+..|..+++. .|-+.++|.++|..+++.
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 82 VFLTAHTEPAVVEKIRSVTAYGYVM----------KSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEEESSSSCCCCGGGGGSCEEEEEE----------TTCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 7543322 22334457788887 899999999999998875
No 95
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=42.29 E-value=1.3e+02 Score=23.86 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=61.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh---CcEEEeCCCC-CCccHHHHHHHH---hCCCc
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMR---YGTVP 402 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~---adv~v~ps~~-E~~g~~~~Eama---~G~Pv 402 (510)
..+++|+.+.+ .....+........+.......-+.+.....+.. .|++++-... +.-|..+++.+. ..+|+
T Consensus 3 ~~~iLivdd~~-~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHH-LIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCH-HHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeE
Confidence 35677777654 3444555555444221122222344444445544 6888876544 335666666654 36777
Q ss_pred EEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 403 IVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 403 v~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|......- .+.+..|..+++. .|-+.+++.++|..++..
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 82 ALISGETDHELIRAALEAGADGFIP----------KSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EEC-----CHHHHHHHHTTCCBBCC----------TTSCHHHHHHHHHHHHTT
T ss_pred EEEeCCCCHHHHHHHHHccCCEEEe----------CCCCHHHHHHHHHHHHcC
Confidence 76533221 2234456778876 889999999999988875
No 96
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=42.24 E-value=1.3e+02 Score=23.83 Aligned_cols=111 Identities=10% Similarity=0.068 Sum_probs=65.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH---------hCcEEEeCCCC-CCccHHHHHHHHh-
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---------GADFILIPSRF-EPCGLIQLHAMRY- 398 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---------~adv~v~ps~~-E~~g~~~~Eama~- 398 (510)
..+++|+.+.+ .....++......+........-+....-..+. ..|++++-... +.-|..+++.+..
T Consensus 8 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 8 PKVILLVEDSK-ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCeEEEEECCH-HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 45677777554 344555555554432112222234444434554 36888876554 3457777777653
Q ss_pred ----CCCcEEecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 399 ----GTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 399 ----G~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.+|+|...... ..+.+..|..+++. .|-+.+++.++|..++..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT----------KSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHHH
Confidence 46776543322 22334557889988 899999999999887653
No 97
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=39.49 E-value=1.4e+02 Score=23.46 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=62.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH-------hC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-------YG 399 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama-------~G 399 (510)
..+++|+.+.+ .....+..+....+..+.. ..+.+..-..+. ..|++++-... +.-|..+++.+. ..
T Consensus 14 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 14 SMRMLVADDHE-ANRMVLQRLLEKAGHKVLC--VNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp -CEEEEECSSH-HHHHHHHHHHHC--CEEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred cceEEEEeCCH-HHHHHHHHHHHHcCCeEEE--eCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 46777777654 2344455544444433332 223343333443 35888775544 456777777664 12
Q ss_pred CCcEEecCCCccc----eEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 400 TVPIVASTGGLVD----TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 400 ~Pvv~s~~gg~~e----~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+|+|+.......+ ....|..+|+. .|-+.+++.++|.++...
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~----------KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFLA----------KPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHC--
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhheee----------CCCCHHHHHHHHHHHHHh
Confidence 6777654333222 33457788988 899999999999887653
No 98
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=39.43 E-value=1.3e+02 Score=23.32 Aligned_cols=109 Identities=10% Similarity=0.073 Sum_probs=66.4
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCC--ceEEeccCCHHHHHHHHH------------hCcEEEeCCCC-CCccHHHHH
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPE--KARGVAKFNIPLAHMIIA------------GADFILIPSRF-EPCGLIQLH 394 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~--~v~~~~~~~~~~~~~~~~------------~adv~v~ps~~-E~~g~~~~E 394 (510)
..+++|+.+.+ .....+.......+. .+.. .-+.++....+. ..|++++-... +.-|..+++
T Consensus 6 ~~~iLivdd~~-~~~~~l~~~L~~~g~~~~v~~--~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 82 (149)
T 1k66_A 6 TQPLLVVEDSD-EDFSTFQRLLQREGVVNPIYR--CITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQ 82 (149)
T ss_dssp TSCEEEECCCH-HHHHHHHHHHHHTTBCSCEEE--ECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CccEEEEECCH-HHHHHHHHHHHHcCCCceEEE--ECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHH
Confidence 45677777654 344455555555543 2332 223444434454 46888876554 446777777
Q ss_pred HHH-----hCCCcEEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 395 AMR-----YGTVPIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 395 ama-----~G~Pvv~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.+. ..+|+|+.....- .+.+..|..+++. .|-+.+++.++|..+++.
T Consensus 83 ~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIV----------KPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp HHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 775 4567775533222 2234457788887 899999999999988764
No 99
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=39.27 E-value=1.4e+02 Score=23.60 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=63.7
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcEE
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 404 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv~ 404 (510)
.+++|+.+.+ .....+.......+-.+. ..-+.+.....+. ..|++++-... +..|..+++.+. ..+|+|+
T Consensus 4 ~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 4 PSVFLIDDDR-DLRKAMQQTLELAGFTVS--SFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHHcCcEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 4667777554 234445555455443333 2233343333333 35887775544 445666666553 3677775
Q ss_pred ecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 405 ASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 405 s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
..... ..+.+..|..+++. .|.+.+++..+|..++..
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIA----------KPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEe----------CCCCHHHHHHHHHHHHHH
Confidence 53222 22334457788887 899999999999998875
No 100
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=38.97 E-value=1.3e+02 Score=22.98 Aligned_cols=107 Identities=11% Similarity=0.023 Sum_probs=63.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh-----CCCc
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVP 402 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~-----G~Pv 402 (510)
.+++|+.+.. .....++.+.. .+..+. ...+.+.....+. ..|++++-... +.-|..+++.+.. .+|+
T Consensus 5 ~~ilivdd~~-~~~~~l~~~l~-~~~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 5 PKVLIVENSW-TMRETLRLLLS-GEFDCT--TAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp CEEEEECSCH-HHHHHHHHHHT-TTSEEE--EESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CEEEEEcCCH-HHHHHHHHHHh-CCcEEE--EECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 4677777554 23444444443 222333 2234443333443 35888776544 5567777777654 6777
Q ss_pred EEecCCCc---cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 403 IVASTGGL---VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 403 v~s~~gg~---~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|......- .+.+..|..+++. .|-+.+++.++|..+++.
T Consensus 81 i~~s~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 81 IFVSGYAPRTEGPADQPVPDAYLV----------KPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp EEEESCCC-----TTSCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHhHHHHhhcCCceEEe----------ccCCHHHHHHHHHHHHhh
Confidence 75543222 2233446677887 899999999999999986
No 101
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=38.94 E-value=31 Score=28.68 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHhCcEEEeCCCCCCccHHHHH---HHHhCCCcEEe
Q 010448 371 MIIAGADFILIPSRFEPCGLIQLH---AMRYGTVPIVA 405 (510)
Q Consensus 371 ~~~~~adv~v~ps~~E~~g~~~~E---ama~G~Pvv~s 405 (510)
..+..||++|.-- .++..-+.+| |.+.|+||++-
T Consensus 64 ~~i~~aD~vvA~l-~~~d~Gt~~EiG~A~algkPV~~l 100 (152)
T 4fyk_A 64 NWLQQADVVVAEV-TQPSLGVGYELGRAVALGKPILCL 100 (152)
T ss_dssp HHHHHCSEEEEEC-SSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCEEEEeC-CCCCCCHHHHHHHHHHcCCeEEEE
Confidence 4799999999843 3555555555 78999999994
No 102
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=38.90 E-value=1.3e+02 Score=23.22 Aligned_cols=111 Identities=7% Similarity=-0.002 Sum_probs=66.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh-------CcEEEeCCCC-CCccHHHHHHHHh---
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG-------ADFILIPSRF-EPCGLIQLHAMRY--- 398 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-------adv~v~ps~~-E~~g~~~~Eama~--- 398 (510)
..+++|+.+.. .....+..+....+.........+.+..-..+.. .|++++-... +.-|..+++.+..
T Consensus 9 ~~~iLivdd~~-~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 9 IDSVLLIDDDD-IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp EEEEEEECSCH-HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred cceEEEEeCCH-HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 35677777654 3455556655555431122222344444445544 6888876554 5567777776654
Q ss_pred ----CCCcEEecCCCcc----ceEEcC-CceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 399 ----GTVPIVASTGGLV----DTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 399 ----G~Pvv~s~~gg~~----e~v~~~-~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.+|+|......-. +.+..+ ..+++. .|-+.++|.++|.+....
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~----------KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVS----------KPLTANALNNLYNKVLNE 139 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEEC----------SSCCHHHHHHHHHHHHCC
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeee----------CCCCHHHHHHHHHHHHHh
Confidence 5666654433222 233345 677887 899999999999988765
No 103
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=38.76 E-value=16 Score=35.84 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.5
Q ss_pred hhhHHHHHHHCCCcEEEEeeC
Q 010448 6 STKLDSFIQANGHRVMTIAPR 26 (510)
Q Consensus 6 ~~~la~~l~~~Gh~V~vi~p~ 26 (510)
.-.||++|+++||+|+++++.
T Consensus 17 ~l~la~~L~~~Gh~V~~~~~~ 37 (416)
T 1rrv_A 17 GVALADRLKALGVQTRMCAPP 37 (416)
T ss_dssp HHHHHHHHHHTTCEEEEEECG
T ss_pred HHHHHHHHHHCCCeEEEEeCH
Confidence 346899999999999999975
No 104
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=38.40 E-value=1.2e+02 Score=22.31 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=59.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH-----hCCCcE
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTVPI 403 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama-----~G~Pvv 403 (510)
+++++.+.+ ...+.+.+.....+-.+... -+.+.....+. ..|++++-... +..|..+++.+. ..+|+|
T Consensus 3 ~iliv~~~~-~~~~~l~~~l~~~g~~v~~~--~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 3 HILLLEEED-EAATVVCEMLTAAGFKVIWL--VDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp EEEEECCCH-HHHHHHHHHHHHTTCEEEEE--SCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred EEEEEeCCH-HHHHHHHHHHHhCCcEEEEe--cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 566676554 23444555544544334322 23333333333 35887775544 445777777775 457777
Q ss_pred EecC-CCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHH
Q 010448 404 VAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 449 (510)
Q Consensus 404 ~s~~-gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll 449 (510)
+... ....+....|..+++. .|-+.+++.+.|..++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVDPLLTAQASAILS----------KPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSSHHHHHHCSEECS----------SCSTTHHHHHHHHTTC
T ss_pred EEeCCCCchhhhhcCHHHhcc----------CCCCHHHHHHHHHHHh
Confidence 5432 2222344456677776 7888899988887654
No 105
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=38.06 E-value=1.5e+02 Score=23.41 Aligned_cols=111 Identities=15% Similarity=0.079 Sum_probs=62.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHH--HhCcEEEeCCCC-CCccHHHHHHHHh---CCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRY---GTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~adv~v~ps~~-E~~g~~~~Eama~---G~Pvv 403 (510)
..+++|+.+.+ ...+.+..+..+.+........-+.++....+ ...|++++-... +.-|..+++.+.. .+|+|
T Consensus 15 ~~~iLivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 93 (152)
T 3eul_A 15 KVRVVVGDDHP-LFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVL 93 (152)
T ss_dssp CEEEEEECSSH-HHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEE
Confidence 45666666544 23344444444433211111122333332333 346777775544 4567777766643 45666
Q ss_pred EecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
......- .+.+..|..+++. .|.+.+++.++|..++..
T Consensus 94 ~~s~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 94 LISAHDEPAIVYQALQQGAAGFLL----------KDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEE----------TTCCHHHHHHHHHHHHHC
T ss_pred EEEccCCHHHHHHHHHcCCCEEEe----------cCCCHHHHHHHHHHHHcC
Confidence 5432222 2344557888988 899999999999999876
No 106
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=37.96 E-value=17 Score=36.68 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=18.7
Q ss_pred hhhHHHHHHHCCCcEEEEeeC
Q 010448 6 STKLDSFIQANGHRVMTIAPR 26 (510)
Q Consensus 6 ~~~la~~l~~~Gh~V~vi~p~ 26 (510)
+-.||+.|+++||+||++++.
T Consensus 25 ~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 25 LFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp HHHHHHHHHHTTCEEEEEEEH
T ss_pred HHHHHHHHHhCCCeEEEEeCC
Confidence 457999999999999999875
No 107
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=37.46 E-value=17 Score=35.61 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.4
Q ss_pred hhhHHHHHHHCCCcEEEEeeC
Q 010448 6 STKLDSFIQANGHRVMTIAPR 26 (510)
Q Consensus 6 ~~~la~~l~~~Gh~V~vi~p~ 26 (510)
.-.||++|+++||+|+++++.
T Consensus 17 ~l~la~~L~~~Gh~V~~~~~~ 37 (415)
T 1iir_A 17 LVALAVRVRDLGADVRMCAPP 37 (415)
T ss_dssp HHHHHHHHHHTTCEEEEEECG
T ss_pred HHHHHHHHHHCCCeEEEEcCH
Confidence 346899999999999999976
No 108
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=36.92 E-value=2.3e+02 Score=26.43 Aligned_cols=130 Identities=11% Similarity=0.065 Sum_probs=77.2
Q ss_pred HHHHHhccceee--cCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 210 KAGILESDMVLT--VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 210 ~~~~~~ad~vi~--vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+-.-+.+|.|+. .++...+.+.++ ..+-|| |+-| +..+|.. .-.+--
T Consensus 86 rvls~~~D~iviR~~~~~~~~~lA~~-------------~~vPVI-Nag~-~~~HPtQ----------------aLaDl~ 134 (307)
T 3tpf_A 86 RVIGAMVDFVMMRVNKHETLLEFARY-------------SKAPVI-NALS-ELYHPTQ----------------VLGDLF 134 (307)
T ss_dssp HHHHHHSSEEEEECSCHHHHHHHHHH-------------CSSCEE-EEEC-SSCCHHH----------------HHHHHH
T ss_pred HHHHHhCCEEEEecCChHHHHHHHHh-------------CCCCEE-eCCC-CCcCcHH----------------HHHHHH
Confidence 444456898776 566666766642 134444 6655 3556532 111233
Q ss_pred HHHHHhCCCCCCC-CcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEec
Q 010448 288 ALQAEVGLPVDRN-IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVA 362 (510)
Q Consensus 288 ~~~~~~g~~~~~~-~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~ 362 (510)
.+++++|-- + ...|.|+|-. ..=...++.++..+ ++++.++|+.. +.+.+..++.+.+.+..+...
T Consensus 135 Ti~e~~g~l---~~gl~va~vGD~--~~va~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~- 205 (307)
T 3tpf_A 135 TIKEWNKMQ---NGIAKVAFIGDS--NNMCNSWLITAAIL---GFEISIAMPKNYKISPEIWEFAMKQALISGAKISLG- 205 (307)
T ss_dssp HHHHTTCCG---GGCCEEEEESCS--SHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEE-
T ss_pred HHHHHhCCC---CCCCEEEEEcCC--CccHHHHHHHHHHc---CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEE-
Confidence 456666632 2 4789999983 22255666777666 78999999742 344455566666665444432
Q ss_pred cCCHHHHHHHHHhCcEEEeCC
Q 010448 363 KFNIPLAHMIIAGADFILIPS 383 (510)
Q Consensus 363 ~~~~~~~~~~~~~adv~v~ps 383 (510)
.+ +.+.+..+|++....
T Consensus 206 -~d---~~eav~~aDvvyt~~ 222 (307)
T 3tpf_A 206 -YD---KFEALKDKDVVITDT 222 (307)
T ss_dssp -SC---HHHHHTTCSEEEECC
T ss_pred -cC---HHHHhcCCCEEEecC
Confidence 22 234789999988765
No 109
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=36.66 E-value=17 Score=35.95 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.4
Q ss_pred hhhHHHHHHHCCCcEEEEeeC
Q 010448 6 STKLDSFIQANGHRVMTIAPR 26 (510)
Q Consensus 6 ~~~la~~l~~~Gh~V~vi~p~ 26 (510)
.-.||++|+++||+|+++++.
T Consensus 37 ~l~la~~L~~~GheV~~~~~~ 57 (441)
T 2yjn_A 37 LVPLAWAFRAAGHEVRVVASP 57 (441)
T ss_dssp THHHHHHHHHTTCEEEEEECG
T ss_pred HHHHHHHHHHCCCeEEEEeCc
Confidence 346899999999999999975
No 110
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=36.63 E-value=1.5e+02 Score=23.00 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=60.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh---CCCcEEe
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPIVA 405 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~---G~Pvv~s 405 (510)
+++|+.+.+. ....+.......+-.+. ...+.+..-..+. ..|++++-... +.-|..+++.+.. .+|+|..
T Consensus 6 ~ILivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 6 RVLLVEDSTS-LAILYKQYVKDEPYDIF--HVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp EEEEECSCTT-HHHHHHHHTTTSSSEEE--EESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEeCCHH-HHHHHHHHHHhcCceEE--EeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5667766542 34444444433332332 2223333333333 46888876544 3457777766643 5666654
Q ss_pred cCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 406 STGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 406 ~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.... ..+.+..|..+++. .|-+.+++..+|..++..
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLE----------KPINADRLKTSVALHLKR 122 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 3222 12334457788987 899999999999888764
No 111
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=36.57 E-value=1.2e+02 Score=23.31 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=61.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC------CCccHHHHHHHH---hC
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF------EPCGLIQLHAMR---YG 399 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~------E~~g~~~~Eama---~G 399 (510)
.+++|+.+.. .....+.......+-.+. ..-+.+.....+.. .|++++-... +.-|..+++.+. ..
T Consensus 4 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 4 GTIIIVDDNK-GVLTAVQLLLKNHFSKVI--TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CEEEEECSCH-HHHHHHHHHHTTTSSEEE--EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred ceEEEEeCCH-HHHHHHHHHHHhCCcEEE--EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 4667776554 244445555444443333 22333443344443 4777765433 335666666554 36
Q ss_pred CCcEEecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 400 TVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 400 ~Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+|+|...... ..+.+..|..+++. .|-+.+++.++|..++..
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVV----------KPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheee----------CCCCHHHHHHHHHHHHHh
Confidence 7777543222 22334457788887 889999999999988865
No 112
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=36.39 E-value=3.3e+02 Score=26.92 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=44.1
Q ss_pred HHHHhCcEEEeCCCCCCccHH--HHHHHH---------hCCCcEEec---CCCccceE--------Ec-CCceeEecccc
Q 010448 371 MIIAGADFILIPSRFEPCGLI--QLHAMR---------YGTVPIVAS---TGGLVDTV--------EE-GFTGFQMGSFS 427 (510)
Q Consensus 371 ~~~~~adv~v~ps~~E~~g~~--~~Eama---------~G~Pvv~s~---~gg~~e~v--------~~-~~~G~l~~~~~ 427 (510)
.++..||.+|.-. -|+|+- ++|++. .++|||..+ +.|..+-+ .+ ....+++
T Consensus 241 ~mv~~SDAfIaLP--GG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~~~~~~~ii---- 314 (460)
T 3bq9_A 241 AFVRCAHGIVIFP--GGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKI---- 314 (460)
T ss_dssp HHHHHCSEEEECS--CSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCTTGGGGCEE----
T ss_pred HHHHhCCEEEEcC--CCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcchhhcCcEE----
Confidence 4678899888533 467775 788887 489999986 33433311 11 1122222
Q ss_pred ccCCCCCccCHHHHHHHHHHHHHh
Q 010448 428 VDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 428 ~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
-.+|++++.+.+.+.+..
T Consensus 315 ------v~ddpeEal~~l~~~~~~ 332 (460)
T 3bq9_A 315 ------IIDDPAAVAQHMHAGMAA 332 (460)
T ss_dssp ------EESCHHHHHHHHHHHHHH
T ss_pred ------EeCCHHHHHHHHHHHHHH
Confidence 358999999999887765
No 113
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=36.19 E-value=1.4e+02 Score=22.72 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=63.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHH-HHhCcEEEeCCCC-CCccHHHHHHHHh---CCCcEEe
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMI-IAGADFILIPSRF-EPCGLIQLHAMRY---GTVPIVA 405 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~adv~v~ps~~-E~~g~~~~Eama~---G~Pvv~s 405 (510)
.+++|+.+.+ ...+.+.....+.+..+.....-..+....+ -...|++++-... +.-|..+++.+.. .+|+|..
T Consensus 2 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 80 (134)
T 3f6c_A 2 LNAIIIDDHP-LAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 80 (134)
T ss_dssp EEEEEECCCH-HHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred eEEEEEcCCH-HHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEE
Confidence 4666776554 3445555555555433331221122222211 2456888876554 4567777776653 4566644
Q ss_pred cCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 406 STGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 406 ~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.... ..+.+..|..+++. .|-+.+++.++|..+++.
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 81 SAKNDHFYGKHCADAGANGFVS----------KKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp ECC---CTHHHHHHTTCSEEEE----------GGGCTHHHHHHHHHHHTT
T ss_pred eCCCChHHHHHHHHhCCCEEEe----------CCCCHHHHHHHHHHHHCC
Confidence 3222 22334557788987 888999999999988865
No 114
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=35.76 E-value=2.2e+02 Score=24.87 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHH--HhCcEEEeCCCC-CCccHHHHHHHHh---CCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRY---GTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~adv~v~ps~~-E~~g~~~~Eama~---G~Pvv 403 (510)
..+++|+.+.+ .....+.......+-.+. ...+.++.-..+ ...|++++-... +.-|+.+++.+.. .+|+|
T Consensus 23 ~~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 23 EARVLVVDDEA-NIVELLSVSLKFQGFEVY--TATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CceEEEEECCH-HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 45777776654 234444444444443333 223444333333 246887775444 4567777776643 46776
Q ss_pred EecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.-....- .+.+..|..+++. .|.+.++|..+|..++..
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~----------Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVT----------KPFSLEEVVARLRVILRR 141 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEe----------CCCCHHHHHHHHHHHHHh
Confidence 5433221 2234557889988 899999999999998864
No 115
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=35.75 E-value=1.6e+02 Score=28.49 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=29.3
Q ss_pred HHHHHHHhCcEEEeCCCC----CC--ccHHHHHHHHhCCCcEE--ecCCCccc
Q 010448 368 LAHMIIAGADFILIPSRF----EP--CGLIQLHAMRYGTVPIV--ASTGGLVD 412 (510)
Q Consensus 368 ~~~~~~~~adv~v~ps~~----E~--~g~~~~Eama~G~Pvv~--s~~gg~~e 412 (510)
.+.+.++.+|+++..... .+ +.-..++.|.-|.-+|- .+.||.-|
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e 310 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE 310 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence 455689999999975432 11 34567777777776653 35677766
No 116
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.59 E-value=1.6e+02 Score=23.20 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=61.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv 403 (510)
..+++|+.+.. .....+.......+-.+. ...+.+.....+. ..|++++-... +.-|..+++.+. ..+|+|
T Consensus 14 ~~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 14 RPEILLVDSQE-VILQRLQQLLSPLPYTLH--FARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHTTSSCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CceEEEECCCH-HHHHHHHHHhcccCcEEE--EECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEE
Confidence 35666666543 234444444444432232 2223333333333 34777765544 455666666554 356776
Q ss_pred EecCCCcc----ceEEcC-CceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VASTGGLV----DTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~gg~~----e~v~~~-~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+.....-. +.+..| ..+++. .|-+.++|..+|..++..
T Consensus 91 ~~s~~~~~~~~~~~~~~g~~~~~l~----------KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 91 LLTGDPDLKLIAKAINEGEIYRYLS----------KPWDDQELLLALRQALEH 133 (153)
T ss_dssp EECCCCCHHHHHHHHHTTCCSEEEC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 55433222 233445 678887 899999999999998875
No 117
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=35.54 E-value=1.4e+02 Score=23.11 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=61.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv 403 (510)
..+++|+.+.. .....+.......+-.+. ..-+.+.....+. ..|++++-. . +.-|..+++.+. ..+|+|
T Consensus 4 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 4 TPTVMVVDESR-ITFLAVKNALEKDGFNVI--WAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHGGGTCEEE--EESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 35667776544 234445555444443333 2223343333443 357777765 4 334555555553 357777
Q ss_pred EecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
......- .+.+..|..+++. .|-+.+++.++|..++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYIL----------KPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEE----------SSCCHHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHCCcceeEe----------CCCCHHHHHHHHHHHHhh
Confidence 5432221 2234457788887 889999999999998875
No 118
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=35.41 E-value=2e+02 Score=26.79 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=79.5
Q ss_pred HHHHHhccceeec--CHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 210 KAGILESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 210 ~~~~~~ad~vi~v--S~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+-.-+.+|.|+.= ++...+.+.+. ..+-|| ||-+ +..+|.. .-.+--
T Consensus 89 rvls~~~D~iviR~~~~~~~~~lA~~-------------~~vPVI-Na~~-~~~HPtQ----------------aLaDl~ 137 (307)
T 2i6u_A 89 KVLSRYVDAIVWRTFGQERLDAMASV-------------ATVPVI-NALS-DEFHPCQ----------------VLADLQ 137 (307)
T ss_dssp HHHHHHEEEEEEECSSHHHHHHHHHH-------------CSSCEE-ESCC-SSCCHHH----------------HHHHHH
T ss_pred HHHHHhCCEEEEecCChhHHHHHHhh-------------CCCCEE-cCCC-CCcCccH----------------HHHHHH
Confidence 3344567877654 45555555541 145556 5655 5566632 112234
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEecc
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAK 363 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~~ 363 (510)
.+++++|-- +...|.|+|-. ...=..-++.++..+ ++++.++|+.. +++.+.+++.+.+.+..+...
T Consensus 138 Ti~e~~g~l---~gl~va~vGD~-~~rva~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~-- 208 (307)
T 2i6u_A 138 TIAERKGAL---RGLRLSYFGDG-ANNMAHSLLLGGVTA---GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVT-- 208 (307)
T ss_dssp HHHHHHSCC---TTCEEEEESCT-TSHHHHHHHHHHHHT---TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEE--
T ss_pred HHHHHhCCc---CCeEEEEECCC-CcCcHHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE--
Confidence 556777732 23689999997 333356677777776 78999999743 334555666666666545433
Q ss_pred CCHHHHHHHHHhCcEEEeCCC
Q 010448 364 FNIPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 364 ~~~~~~~~~~~~adv~v~ps~ 384 (510)
.+ +.+.+..+|++.....
T Consensus 209 ~d---~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 209 AD---AHAAAAGADVLVTDTW 226 (307)
T ss_dssp SC---HHHHHTTCSEEEECCS
T ss_pred EC---HHHHhcCCCEEEecce
Confidence 22 2357899999988654
No 119
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=34.93 E-value=1.1e+02 Score=27.61 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=45.0
Q ss_pred EEEEEec-CChhHHHHHHHHHHHCCC-ceEEeccCCHHHHHHHHH-hCcEEEeCCCCCCccHHHHHHHHhCCCcEEecCC
Q 010448 332 QIIVLGT-GKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 408 (510)
Q Consensus 332 ~l~i~G~-g~~~~~~~~~~l~~~~~~-~v~~~~~~~~~~~~~~~~-~adv~v~ps~~E~~g~~~~Eama~G~Pvv~s~~g 408 (510)
++.|+|. |. +-+.+.+...+.++ .+....... +.+..++. .+|++|--+..+..--.+..+...|+|+|+..+|
T Consensus 2 kV~V~Ga~G~--mG~~i~~~~~~~~~~elva~~d~~-~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 2 RVGVLGAKGK--VGTTMVRAVAAADDLTLSAELDAG-DPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp EEEEETTTSH--HHHHHHHHHHHCTTCEEEEEECTT-CCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred EEEEECCCCH--HHHHHHHHHHhCCCCEEEEEEccC-CCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 6778884 76 55555555554432 343333222 12223444 7899995555555433455668899999987665
Q ss_pred Cccc
Q 010448 409 GLVD 412 (510)
Q Consensus 409 g~~e 412 (510)
...+
T Consensus 79 ~~~e 82 (245)
T 1p9l_A 79 FTAE 82 (245)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 4433
No 120
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=34.57 E-value=1.6e+02 Score=22.75 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=66.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHH-CCCceEEeccCCHHHHHHHHHh---CcEEEeCCCCC--CccHHHHHHHHh-----
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEIL-YPEKARGVAKFNIPLAHMIIAG---ADFILIPSRFE--PCGLIQLHAMRY----- 398 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~---adv~v~ps~~E--~~g~~~~Eama~----- 398 (510)
..+++|+.+.+ .....++.+... .+-.+. ..-+.++.-..+.. .|++++-.... .-|..+++.+..
T Consensus 4 ~~~ilivdd~~-~~~~~l~~~L~~~~~~~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 4 DGTVLLIDYFE-YEREKTKIIFDNIGEYDFI--EVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHHCCCEEE--EECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhccCccEE--EECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 35677777654 244455555555 443343 22344444444444 68888765543 346667766554
Q ss_pred CCCcEEecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 399 GTVPIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 399 G~Pvv~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.+|+|......- .+.+..|..+++. .|-+.++|.++|..+++.
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYIL----------KPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEE----------SSCCTTHHHHHHHHHHCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEE----------CCCCHHHHHHHHHHHHHh
Confidence 678876543322 2334557788988 889999999999998875
No 121
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=33.75 E-value=1.9e+02 Score=27.40 Aligned_cols=131 Identities=16% Similarity=0.112 Sum_probs=78.5
Q ss_pred HHHHHhccceeec--CHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 210 KAGILESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 210 ~~~~~~ad~vi~v--S~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+-.-+.+|.|+.= ++...+.+.+. ..+-|| ||-| +...|.. .-.+--
T Consensus 120 rvLs~y~D~IviR~~~~~~~~~lA~~-------------~~vPVI-Nag~-~~~HPtQ----------------aLaDl~ 168 (340)
T 4ep1_A 120 KVLSHYIDGIMIRTFSHADVEELAKE-------------SSIPVI-NGLT-DDHHPCQ----------------ALADLM 168 (340)
T ss_dssp HHHHHHCSEEEEECSCHHHHHHHHHH-------------CSSCEE-EEEC-SSCCHHH----------------HHHHHH
T ss_pred HHHHHhCCEEEEecCChhHHHHHHHh-------------CCCCEE-eCCC-CCCCcHH----------------HHHHHH
Confidence 4344568877653 44555666541 134455 6655 4555532 112234
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEecc
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAK 363 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~~ 363 (510)
.+++++|-- +...|.|+|-+ ..=...++.++..+ ++++.++|+.. +.+.+.+++.+.+.+..+....
T Consensus 169 TI~E~~G~l---~glkva~vGD~--~nva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~- 239 (340)
T 4ep1_A 169 TIYEETNTF---KGIKLAYVGDG--NNVCHSLLLASAKV---GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILH- 239 (340)
T ss_dssp HHHHHHSCC---TTCEEEEESCC--CHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEES-
T ss_pred HHHHHhCCC---CCCEEEEECCC--chhHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEC-
Confidence 567777742 33789999987 22355677777776 78999999742 3455566666666665554322
Q ss_pred CCHHHHHHHHHhCcEEEeCCC
Q 010448 364 FNIPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 364 ~~~~~~~~~~~~adv~v~ps~ 384 (510)
+ +.+.+..+|++.....
T Consensus 240 -d---~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 240 -N---PELAVNEADFIYTDVW 256 (340)
T ss_dssp -C---HHHHHTTCSEEEECCC
T ss_pred -C---HHHHhCCCCEEEecCc
Confidence 2 2357899999987654
No 122
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=33.39 E-value=1.5e+02 Score=22.19 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=62.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH--hCCCcEEe
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA 405 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama--~G~Pvv~s 405 (510)
.+++|+.+.+ .....+.......+-.+.. ..+.++.-..+. ..|++++-... +.-|..+++.+. ...|+|..
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 3 KKILVVDDEK-PIADILEFNLRKEGYEVHC--AHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEECCH-HHHHHHHHHHHhCCEEEEE--eCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 3566676544 2444455555554433432 234444434443 35777775544 445677776654 35677654
Q ss_pred cCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 406 STGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 406 ~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
....- .+.+..|..+++. .|-+.+++..++..++.
T Consensus 80 t~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 80 TAKDSEIDKVIGLEIGADDYVT----------KPFSTRELLARVKANLR 118 (120)
T ss_dssp EESSCHHHHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHhCCcceeEc----------CCCCHHHHHHHHHHHHh
Confidence 32222 1234567889988 89999999999987764
No 123
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=33.35 E-value=1.5e+02 Score=22.13 Aligned_cols=106 Identities=16% Similarity=0.136 Sum_probs=61.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh-----CCCcE
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVPI 403 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~-----G~Pvv 403 (510)
+++|+.+.+ .....+.......+-.+. ...+....-..+. ..|++++-... +.-|..+++.+.. .+|+|
T Consensus 3 ~ilivdd~~-~~~~~l~~~L~~~~~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 3 KVLIVEDNE-LNMKLFHDLLEAQGYETL--QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred EEEEEcCCH-HHHHHHHHHHHHcCcEEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 456666544 344445555555443333 2233343333333 46888875544 4457777777653 56777
Q ss_pred EecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 404 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 404 ~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
...... ..+.+..|..+++. .|-+.+++.++|..++.
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYIS----------KPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEC------CHHHHHHHTCSEEEC----------SSCCHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHHHHhCCCCEEEe----------CCCCHHHHHHHHHHHHh
Confidence 543222 12233457788887 89999999999988764
No 124
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=32.24 E-value=1.3e+02 Score=28.34 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=48.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHH----------HHHHHHhCcEEEeC--CCCCC---ccHHHHHH
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPL----------AHMIIAGADFILIP--SRFEP---CGLIQLHA 395 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~----------~~~~~~~adv~v~p--s~~E~---~g~~~~Ea 395 (510)
-.+-|+|-|. +-+.+.+.+..++-+|..+.....+. +.++++.||++++- ...|+ ++-..+..
T Consensus 142 ~tvGIiG~G~--IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~ 219 (334)
T 3kb6_A 142 LTLGVIGTGR--IGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISL 219 (334)
T ss_dssp SEEEEECCSH--HHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHH
T ss_pred cEEEEECcch--HHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhh
Confidence 3566777776 56666666666665565554443221 34689999998863 33455 45567777
Q ss_pred HHhCCCcEEecCCCc
Q 010448 396 MRYGTVPIVASTGGL 410 (510)
Q Consensus 396 ma~G~Pvv~s~~gg~ 410 (510)
|--|.-+|-+.-|++
T Consensus 220 mk~~a~lIN~aRG~i 234 (334)
T 3kb6_A 220 MKDGVYLINTARGKV 234 (334)
T ss_dssp SCTTEEEEECSCGGG
T ss_pred cCCCeEEEecCcccc
Confidence 777765665555554
No 125
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=32.22 E-value=1.7e+02 Score=22.36 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=63.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcEE
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 404 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv~ 404 (510)
.+++|+.+.+ .....+.......+..+. ...+.+..-..+. ..|++++-... ..-|..+++.+. .++|+|.
T Consensus 4 ~~Ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 4 KRILIVDDDT-AILDSTKQILEFEGYEVE--IAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred cEEEEEeCCH-HHHHHHHHHHHHCCceEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 4566776554 234445555444443333 2233333333333 35888875544 345676766653 3567765
Q ss_pred ec-CCC---ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 405 AS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 405 s~-~gg---~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.. ... ..+.+..|..+++. .|-+.+++.++|..++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIM----------KPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhcc----------CCCCHHHHHHHHHHHHhc
Confidence 43 222 22334567889988 899999999999988764
No 126
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=32.19 E-value=1.7e+02 Score=22.52 Aligned_cols=108 Identities=11% Similarity=0.032 Sum_probs=61.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH--------hC
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--------YG 399 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama--------~G 399 (510)
.+++|+.+.+ .....+..+....+..+... -+.+..-..+. ..|++++-... +.-|..+++.+. ..
T Consensus 11 ~~iLivdd~~-~~~~~l~~~L~~~~~~v~~~--~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 11 LSVLIAEDND-ICRLVAAKALEKCTNDITVV--TNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CEEEEECCCH-HHHHHHHHHHTTTCSEEEEE--SSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred ceEEEEcCCH-HHHHHHHHHHHHcCCceEEE--CCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 4677776554 23444555444433233322 23343333333 36888876554 345777776664 24
Q ss_pred CCcEEecC-CCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 400 TVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 400 ~Pvv~s~~-gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+|++.... .........|..+++. .|-+.++|.++|..++..
T Consensus 88 ~~ii~~s~~~~~~~~~~~g~~~~l~----------KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 88 ASIIAITADTIDDDRPGAELDEYVS----------KPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp CCCEEEESSCCSCCCCCSSCSEEEE----------SSCCHHHHHHHHHHHHC-
T ss_pred eEEEEEeCccchhHHHhCChhheEe----------CCCCHHHHHHHHHHHhCC
Confidence 56665432 2222333445678887 899999999999887753
No 127
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=32.13 E-value=1.6e+02 Score=22.14 Aligned_cols=108 Identities=13% Similarity=0.207 Sum_probs=63.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCC-ceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh-----CC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GT 400 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~-~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~-----G~ 400 (510)
..+++|+.+.+ .....+.......+. .+.. .-+....-..+. ..|++++-... +..|..+++.+.. .+
T Consensus 4 ~~~ilivdd~~-~~~~~l~~~l~~~~~~~v~~--~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 4 ELKFLVVDDFS-TMRRIVRNLLKELGFNNVEE--AEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TCCEEEECSCH-HHHHHHHHHHHHTTCCCEEE--ESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred ccEEEEECCCH-HHHHHHHHHHHHcCCcEEEe--eCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 45677777654 344455555554442 2322 223333333443 35888775544 4467777877754 46
Q ss_pred CcEEecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 401 VPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 401 Pvv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
|+|...... ..+.+..|..+++. .|-+.+++.++|..++.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVV----------KPFTAATLEEKLNKIFE 124 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceee----------cCCCHHHHHHHHHHHHH
Confidence 766543222 22334457788887 89999999999988775
No 128
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=31.63 E-value=2.4e+02 Score=24.06 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=65.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv 403 (510)
..+++|+.+.+ .....+.......+-.+. ...+.+..-..+. ..|++++-... +.-|..+++.+. ..+|+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 7 SPRVLVVDDDS-DVLASLERGLRLSGFEVA--TAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 45677777654 234445554444443333 2234444333443 35888775544 446777777664 367777
Q ss_pred EecCC----CccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~g----g~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
..... ...+.+..|..|++. .|.+.+++..+|..++..
T Consensus 84 ~lt~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 84 VLSARSSVDDRVAGLEAGADDYLV----------KPFVLAELVARVKALLRR 125 (233)
T ss_dssp EEECCCTTTCCCTTTTTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 54322 223344567788987 899999999999988764
No 129
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=31.50 E-value=2.2e+02 Score=23.57 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=26.8
Q ss_pred HHHHhCcEEEeCCC----CCCccHHHHH---HHHhCCCcEEecC
Q 010448 371 MIIAGADFILIPSR----FEPCGLIQLH---AMRYGTVPIVAST 407 (510)
Q Consensus 371 ~~~~~adv~v~ps~----~E~~g~~~~E---ama~G~Pvv~s~~ 407 (510)
..+..||++|.--. .++-..+.+| |.|.|+||++-..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 58999999987632 1444556666 7899999998653
No 130
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=31.45 E-value=1.8e+02 Score=22.33 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=63.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC--CCccHHHHHHHH--hCCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF--EPCGLIQLHAMR--YGTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~--E~~g~~~~Eama--~G~Pvv 403 (510)
..+++|+.+.. ...+.+.......+-.+... .-+.+.....+. ..|++++-... +.-|..+++.+. ..+|+|
T Consensus 9 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~~~-~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii 86 (140)
T 3cg0_A 9 LPGVLIVEDGR-LAAATLRIQLESLGYDVLGV-FDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPII 86 (140)
T ss_dssp CCEEEEECCBH-HHHHHHHHHHHHHTCEEEEE-ESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEE
T ss_pred CceEEEEECCH-HHHHHHHHHHHHCCCeeEEE-ECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEE
Confidence 56777777654 23444444444433333321 223333333333 46888876544 235666666554 478887
Q ss_pred EecCCCcc----ceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VASTGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~gg~~----e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+.....-. +.+..|..+++. .|-+.+++..+|..+++.
T Consensus 87 ~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 87 FITSSQDVETFQRAKRVNPFGYLA----------KPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EEECCCCHHHHHHHHTTCCSEEEE----------ESCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCCCEEEe----------CCCCHHHHHHHHHHHHhc
Confidence 65332222 234457788887 889999999999988875
No 131
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=31.45 E-value=47 Score=27.88 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHhCcEEEeCCCCCCccHHHHH---HHHhCCCcEEec
Q 010448 371 MIIAGADFILIPSRFEPCGLIQLH---AMRYGTVPIVAS 406 (510)
Q Consensus 371 ~~~~~adv~v~ps~~E~~g~~~~E---ama~G~Pvv~s~ 406 (510)
..+..||++|.--. +.-..+.+| |.+.|+||++-.
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~ 110 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLF 110 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEE
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEE
Confidence 48999999987432 555556555 789999999864
No 132
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.44 E-value=1.7e+02 Score=22.14 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=61.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC-CCccHHHHHHHHh---CCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~-E~~g~~~~Eama~---G~Pvv 403 (510)
..+++|+.+.+ .....+.+.....+..+.. ..+.+.....+.. .|++++-... +.-|..+++.+.. .+|+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 7 GKQILIVEDEQ-VFRSLLDSWFSSLGATTVL--AADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TCEEEEECSCH-HHHHHHHHHHHHTTCEEEE--ESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhCCceEEE--eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 45777777654 2445555555555533432 2344444444433 5888876544 4467777776653 46776
Q ss_pred EecCCCc----cceEEcCCceeEeccccccCCCCCcc-CHHHHHHHHHHHHHh
Q 010448 404 VASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~-d~~~la~~i~~ll~~ 451 (510)
......- .+.+..|..+++. .|- +.+.+.+++..++..
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLL----------KPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEE----------SCC---CHHHHHHHHHHC-
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEe----------CCCCcHHHHHHHHHHHhch
Confidence 5433222 2344567888887 777 889999999888763
No 133
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=31.20 E-value=1.2e+02 Score=26.72 Aligned_cols=97 Identities=10% Similarity=0.054 Sum_probs=56.4
Q ss_pred cccccChhhHHHHHHhhhhCCcEEEEEecCC-----hhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEeCCC
Q 010448 310 LEEQKGSDILAAAIPHFIKENVQIIVLGTGK-----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 310 l~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~-----~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ps~ 384 (510)
+....-++.+.++++++...+.+++++..+. +.+...+.+.-.+++..+......+ +..+.+..+|.+++|-=
T Consensus 11 ~~~~~~l~~~~~~l~~~~~~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~--d~~~~l~~ad~I~lpGG 88 (229)
T 1fy2_A 11 LPGKAWLEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVA--DPLAAIEKAEIIIVGGG 88 (229)
T ss_dssp CTTSCTTTTTHHHHHHHHTTCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSS--CHHHHHHHCSEEEECCS
T ss_pred CCCCcHHHHHHHHHHHHhcCCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccc--cHHHHHhcCCEEEECCC
Confidence 4333335566677776665567888887652 2233344444445553333221112 12256888999999961
Q ss_pred --------C--CCccHHHHHHHHhCCCcEEecCC
Q 010448 385 --------F--EPCGLIQLHAMRYGTVPIVASTG 408 (510)
Q Consensus 385 --------~--E~~g~~~~Eama~G~Pvv~s~~g 408 (510)
+ -++--.+-|+...|+|++.+..|
T Consensus 89 ~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 89 NTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred cHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 1 12333567788899999988755
No 134
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=30.77 E-value=1.8e+02 Score=24.07 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=66.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC-CCccHHHHHHHHh---CCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~-E~~g~~~~Eama~---G~Pvv 403 (510)
..+++|+.+.+ .....+..+....+-.+ ...-+.+..-..+.. .|++++-... +.-|+.+++.+.. .+|||
T Consensus 7 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v--~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 7 DKNFLVIDDNE-VFAGTLARGLERRGYAV--RQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCEE--EEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCeEEEEcCCH-HHHHHHHHHHHHCCCEE--EEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 45677777654 34445555555544333 222344444444443 5887775443 4467777776543 67777
Q ss_pred EecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.-.... ..+.+..|..+|+. .|-+.+++..+|..++..
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~----------KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLA----------KPANVESILAALQTNASE 125 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHTSTTHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHhee----------CCCCHHHHHHHHHHHHHH
Confidence 543322 22344567889998 899999999999888765
No 135
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=30.08 E-value=2.3e+02 Score=26.47 Aligned_cols=129 Identities=13% Similarity=0.042 Sum_probs=77.7
Q ss_pred HHHhccceeec--CHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHH
Q 010448 212 GILESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 289 (510)
Q Consensus 212 ~~~~ad~vi~v--S~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (510)
.-+.+|.|+.= ++...+.+.++ ..+-|| ||-| +..+|.. .-.+--.+
T Consensus 98 ls~~~D~iviR~~~~~~~~~lA~~-------------~~vPVI-Na~~-~~~HPtQ----------------aLaDl~Ti 146 (315)
T 1pvv_A 98 LSRYVDAIMARVYDHKDVEDLAKY-------------ATVPVI-NGLS-DFSHPCQ----------------ALADYMTI 146 (315)
T ss_dssp HTTTCSEEEEECSSHHHHHHHHHH-------------CSSCEE-EEEC-SSCCHHH----------------HHHHHHHH
T ss_pred HHHhCcEEEEecCchHHHHHHHHh-------------CCCCEE-cCCC-CCCCcHH----------------HHHHHHHH
Confidence 33457876643 55556666541 135555 6665 3566532 11223455
Q ss_pred HHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEeccCC
Q 010448 290 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFN 365 (510)
Q Consensus 290 ~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~~~~ 365 (510)
++++|-- +...|.|+|-. ..=...++.++..+ ++++.++|+.. +++.+.+++.+.+.+..+... .+
T Consensus 147 ~e~~g~l---~gl~va~vGD~--~rva~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~--~d 216 (315)
T 1pvv_A 147 WEKKGTI---KGVKVVYVGDG--NNVAHSLMIAGTKL---GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELL--HD 216 (315)
T ss_dssp HHHHSCC---TTCEEEEESCC--CHHHHHHHHHHHHT---TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEE--SC
T ss_pred HHHhCCc---CCcEEEEECCC--cchHHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE--eC
Confidence 6777732 23789999997 33356677777766 78999999743 335555666666666444433 22
Q ss_pred HHHHHHHHHhCcEEEeCCC
Q 010448 366 IPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 366 ~~~~~~~~~~adv~v~ps~ 384 (510)
+.+.+..+|++.....
T Consensus 217 ---~~eav~~aDvvy~~~w 232 (315)
T 1pvv_A 217 ---PVKAVKDADVIYTDVW 232 (315)
T ss_dssp ---HHHHTTTCSEEEECCC
T ss_pred ---HHHHhCCCCEEEEcce
Confidence 2357899999998765
No 136
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=29.84 E-value=2.4e+02 Score=26.97 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=80.3
Q ss_pred HHHHHhccceeec--CHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 210 KAGILESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 210 ~~~~~~ad~vi~v--S~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+-+-+.+|.|+.= ++...+.+.+. ..+-|| ||-+ +.+.|.. .-.+--
T Consensus 117 rvLs~~~D~IviR~~~~~~~~~lA~~-------------s~vPVI-Na~~-~~~HPtQ----------------aLaDl~ 165 (359)
T 2w37_A 117 KVLGSMFDGIEFRGFKQSDAEILARD-------------SGVPVW-NGLT-DEWHPTQ----------------MLADFM 165 (359)
T ss_dssp HHHHHHCSEEEEESSCHHHHHHHHHH-------------SSSCEE-EEEC-SSCCHHH----------------HHHHHH
T ss_pred HHHHHhcCEEEEecCChHHHHHHHHh-------------CCCCEE-cCCC-CCCCccH----------------HHHHHH
Confidence 3344568877653 55666666542 134555 6665 5666632 122234
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEecc
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAK 363 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~~ 363 (510)
.+++++|-- +...|.|+|-. ...=..-++.++..+ ++.+.++|+.. +.+.+.+++.+.+.+..+....
T Consensus 166 Ti~E~~g~l---~gl~va~vGD~-~~rva~Sl~~~~~~l---G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~- 237 (359)
T 2w37_A 166 TVKENFGKL---QGLTLTFMGDG-RNNVANSLLVTGAIL---GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITD- 237 (359)
T ss_dssp HHHHHHSCC---TTCEEEEESCT-TSHHHHHHHHHHHHH---TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEES-
T ss_pred HHHHHhCCc---CCeEEEEECCC-ccchHHHHHHHHHHc---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEe-
Confidence 556777732 23789999997 233356677777776 78999999742 3455556666666665554432
Q ss_pred CCHHHHHHHHHhCcEEEeCCC
Q 010448 364 FNIPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 364 ~~~~~~~~~~~~adv~v~ps~ 384 (510)
++.+.+..+|++.....
T Consensus 238 ----d~~eav~~aDvvytd~w 254 (359)
T 2w37_A 238 ----DLDEGLKGSNVVYTDVW 254 (359)
T ss_dssp ----CHHHHHTTCSEEEECCS
T ss_pred ----CHHHHhcCCCEEEEccc
Confidence 22357899999987654
No 137
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=29.74 E-value=1.4e+02 Score=27.81 Aligned_cols=140 Identities=17% Similarity=0.102 Sum_probs=77.4
Q ss_pred HHHHHhccceeec--CHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 210 KAGILESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 210 ~~~~~~ad~vi~v--S~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+-.-+.+|.|+.= ++...+.+.++ ..+-|| ||-|.+.++|.. .-.+--
T Consensus 91 rvls~~~D~iviR~~~~~~~~~lA~~-------------~~vPVI-Nag~g~~~HPtQ----------------~LaDl~ 140 (306)
T 4ekn_B 91 RVISGYADIIVLRHPSEGAARLASEY-------------SQVPII-NAGDGSNQHPTQ----------------TLLDLY 140 (306)
T ss_dssp HHHHHHCSEEEEECSSTTHHHHHHHH-------------CSSCEE-ESCSSSSCCHHH----------------HHHHHH
T ss_pred HHHHHhCcEEEEEcCChHHHHHHHHh-------------CCCCEE-eCCCCCCcCcHH----------------HHHHHH
Confidence 3344567877653 34455555431 134444 777666666632 112234
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHH
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIP 367 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~ 367 (510)
.+++++|-- +...|.|+|-+....=...++.++..+ +++++.++++..-...+.+.+.+.+.+..+.... +.
T Consensus 141 Ti~e~~g~l---~glkva~vGD~~~~rva~Sl~~~~~~~--~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~--d~- 212 (306)
T 4ekn_B 141 TIMREIGRI---DGIKIAFVGDLKYGRTVHSLVYALSLF--ENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKE--SL- 212 (306)
T ss_dssp HHHHHHSCS---TTCEEEEESCTTTCHHHHHHHHHHHTS--SSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEES--CG-
T ss_pred HHHHHhCCc---CCCEEEEEcCCCCCcHHHHHHHHHHhc--CCCEEEEECCcccccCHHHHHHHHHcCCEEEEEc--CH-
Confidence 567777732 337899999875444455666676665 3789999997431112233333344454453332 21
Q ss_pred HHHHHHHhCcEEEeCCCC-CCcc
Q 010448 368 LAHMIIAGADFILIPSRF-EPCG 389 (510)
Q Consensus 368 ~~~~~~~~adv~v~ps~~-E~~g 389 (510)
.+.+..+|++...... |.++
T Consensus 213 --~eav~~aDvvy~~~~q~er~~ 233 (306)
T 4ekn_B 213 --DDLDDDIDVLYVTRIQKERFP 233 (306)
T ss_dssp --GGCCTTCSEEEECCCCGGGCC
T ss_pred --HHHhcCCCEEEeCCcccccCC
Confidence 2468899998876543 4443
No 138
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=29.64 E-value=1.8e+02 Score=21.87 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=64.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC-CCccHHHHHHHH-----hCCCcE
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-----YGTVPI 403 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~-E~~g~~~~Eama-----~G~Pvv 403 (510)
+++++.+.+ .....+.......+-.+. ..-+.+..-..+.. .|++++-... +.-|..+++.+. ..+|+|
T Consensus 4 ~ILivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 4 KVLLVDDSA-VLRKIVSFNLKKEGYEVI--EAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred eEEEEeCCH-HHHHHHHHHHHHCCcEEE--EeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 566666544 344455555555543343 22344444444443 5888876544 456788887774 357777
Q ss_pred EecCCCcc----ceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 404 VASTGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 404 ~s~~gg~~----e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
.....+-. +.+..|..+++. .|-+.+++.++|.++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~----------KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMR----------KPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhcc----------CCCCHHHHHHHHHHHhc
Confidence 54332222 233457888988 89999999999988764
No 139
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=29.44 E-value=1.7e+02 Score=21.68 Aligned_cols=108 Identities=15% Similarity=0.191 Sum_probs=62.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH--hCCCcEEe
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA 405 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama--~G~Pvv~s 405 (510)
.+++|+.+.+ .....+.......+-.+. ...+......++. ..|++++-... +..|..+++.+. ...|+|..
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~~~~v~--~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 3 HHIVIVEDEP-VTQARLQSYFTQEGYTVS--VTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp CEEEEECSSH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEECCH-HHHHHHHHHHHHCCCeEE--EecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEE
Confidence 3566666544 234445554444443333 2233444333443 35888775544 345777777664 35666654
Q ss_pred c-CCCc---cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 406 S-TGGL---VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 406 ~-~gg~---~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
. .... .+.+..|..+++. .|-+.+++..+|..++..
T Consensus 80 s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 80 TGRSDRIDRIVGLEMGADDYVT----------KPLELRELVVRVKNLLWR 119 (122)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred ECCCChhhHHHHHHhCHHHHcc----------CCCCHHHHHHHHHHHHHH
Confidence 3 2221 2234457788987 899999999999887753
No 140
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=29.41 E-value=2.1e+02 Score=22.65 Aligned_cols=110 Identities=13% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC-CCccHHHHHHHH-----hCC
Q 010448 329 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-----YGT 400 (510)
Q Consensus 329 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~-E~~g~~~~Eama-----~G~ 400 (510)
++.+++|+-+.+ ...+.++.+-...+-.+.. ..-++...-+++.. -|++++=-.. +--|..+++.+- ..+
T Consensus 11 k~~rILiVDD~~-~~r~~l~~~L~~~G~~~v~-~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 11 KNMKILIVDDFS-TMRRIVKNLLRDLGFNNTQ-EADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp TTCCEEEECSCH-HHHHHHHHHHHHTTCCCEE-EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCEEEEEeCCH-HHHHHHHHHHHHcCCcEEE-EECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCC
Confidence 477888887644 3556666666666532222 22345544444443 5787765544 456888888774 467
Q ss_pred CcEEecCCCccc----eEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 401 VPIVASTGGLVD----TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 401 Pvv~s~~gg~~e----~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
|||.-...+-.+ ....|.++|+. .|-++++|.++|.++++
T Consensus 89 pvI~lTa~~~~~~~~~~~~~Ga~~yl~----------KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 89 PVLMITAEAKREQIIEAAQAGVNGYIV----------KPFTAATLKEKLDKIFE 132 (134)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHCC
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEE----------CCCCHHHHHHHHHHHHh
Confidence 887544333222 33457899998 89999999999988764
No 141
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=29.19 E-value=2.8e+02 Score=23.95 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=62.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh--CCCcEEe
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY--GTVPIVA 405 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~--G~Pvv~s 405 (510)
.+++|+.+.+ .....+.......+-.+.... +.++.-..+. ..|++++-... +..|..+++.+.. .+|+|.-
T Consensus 6 ~~ILivdd~~-~~~~~l~~~L~~~g~~v~~~~--~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 6 QRILVVDDDA-SLAEMLTIVLRGEGFDTAVIG--DGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEEEEC--CGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEeCCH-HHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 4667776554 234445544444443343222 2222222332 46888775544 4457777776643 6777754
Q ss_pred cC-CC---ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 406 ST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 406 ~~-gg---~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.. .. ..+.+..|..|++. .|.+++++..+|..++..
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIM----------KPFKPKELVARVRARLRR 122 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHCCC
T ss_pred eCCCCHHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 32 22 22344567889987 889999999999987653
No 142
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=28.92 E-value=2e+02 Score=22.30 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=42.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCC-ceEEeccCCHHHHHHHHH---hCcEEEeCCCC-CCccHHHHHHHHh--CCCc
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIA---GADFILIPSRF-EPCGLIQLHAMRY--GTVP 402 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~-~v~~~~~~~~~~~~~~~~---~adv~v~ps~~-E~~g~~~~Eama~--G~Pv 402 (510)
..+++|+.+. +.....+..+....++ .+.. ..-+.++....+. ..|++++-... +.-|+.+++.+.. ..|+
T Consensus 13 ~~~vlivdd~-~~~~~~l~~~L~~~~~~~~v~-~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~i 90 (145)
T 3kyj_B 13 PYNVMIVDDA-AMMRLYIASFIKTLPDFKVVA-QAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTRAKI 90 (145)
T ss_dssp SEEEEEECSC-HHHHHHHHHHHTTCTTEEEEE-EESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCCCEE
T ss_pred CCeEEEEcCC-HHHHHHHHHHHHhCCCceEEE-EECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCe
Confidence 3445555543 3344555555554422 2221 2223333333333 35888876544 4456666665542 3444
Q ss_pred EEecC---CC---ccceEEcCCceeEe
Q 010448 403 IVAST---GG---LVDTVEEGFTGFQM 423 (510)
Q Consensus 403 v~s~~---gg---~~e~v~~~~~G~l~ 423 (510)
+.--. .. ..+.+..|..+|+.
T Consensus 91 iil~~~~~~~~~~~~~~~~~ga~~~l~ 117 (145)
T 3kyj_B 91 CMLSSVAVSGSPHAARARELGADGVVA 117 (145)
T ss_dssp C-CBSSCSTTSSHHHHHHHTTCSCCCB
T ss_pred EEEEEeccCChHHHHHHHhCCCCEEEe
Confidence 33221 11 12344557778877
No 143
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=28.87 E-value=24 Score=35.56 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=19.0
Q ss_pred hhhHHHHHHHC-CCcEEEEeeCC
Q 010448 6 STKLDSFIQAN-GHRVMTIAPRY 27 (510)
Q Consensus 6 ~~~la~~l~~~-Gh~V~vi~p~~ 27 (510)
.-.||+.|+++ ||+||++++..
T Consensus 23 ~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 23 LVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp HHHHHHHHHHHHCCEEEEEECCS
T ss_pred HHHHHHHHHhCCCCEEEEEECCC
Confidence 45799999998 99999998763
No 144
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=28.33 E-value=25 Score=31.53 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=16.3
Q ss_pred hHHHHHHHCCCcEEEEeeC
Q 010448 8 KLDSFIQANGHRVMTIAPR 26 (510)
Q Consensus 8 ~la~~l~~~Gh~V~vi~p~ 26 (510)
.+|++|+++|++|+++...
T Consensus 34 aiA~~~~~~Ga~V~lv~~~ 52 (232)
T 2gk4_A 34 IITETLLSAGYEVCLITTK 52 (232)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 6788899999999999754
No 145
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=28.07 E-value=1.5e+02 Score=26.15 Aligned_cols=53 Identities=9% Similarity=-0.117 Sum_probs=31.6
Q ss_pred hhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHH
Q 010448 317 DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHM 371 (510)
Q Consensus 317 ~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 371 (510)
.++++++.+.++..-++-++|-++ .-..++.+..-++..+..+...+.++...
T Consensus 93 ~Dil~aL~~a~~~~~kIavVg~~~--~~~~~~~i~~ll~~~i~~~~~~~~ee~~~ 145 (225)
T 2pju_A 93 YDVLQFLAKAGKLTSSIGVVTYQE--TIPALVAFQKTFNLRLDQRSYITEEDARG 145 (225)
T ss_dssp HHHHHHHHHTTCTTSCEEEEEESS--CCHHHHHHHHHHTCCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHhhCCcEEEEeCch--hhhHHHHHHHHhCCceEEEEeCCHHHHHH
Confidence 467778888876555788888765 22334444444444566655556655543
No 146
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=27.61 E-value=2.3e+02 Score=27.10 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=57.4
Q ss_pred HHHHHHHhCCC-CCCCCcEEEEecCcccc--cChhhHHHHHHhhhhCCcEEEEEecC-C----hhHHHHHHHHHHHCCCc
Q 010448 286 KEALQAEVGLP-VDRNIPVIGFIGRLEEQ--KGSDILAAAIPHFIKENVQIIVLGTG-K----KPMEKQLEQLEILYPEK 357 (510)
Q Consensus 286 ~~~~~~~~g~~-~~~~~~~i~~~Grl~~~--Kg~~~li~a~~~l~~~~~~l~i~G~g-~----~~~~~~~~~l~~~~~~~ 357 (510)
--.+++++|-. .+.-+.+|.|+|-+... .=..-++.++..+ ++.+.++++. . +++.+.+++.+.+.+..
T Consensus 176 l~TI~E~~g~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~~a~~~g~~ 252 (359)
T 1zq6_A 176 ALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRM---GMDVTLLCPTPDYILDERYMDWAAQNVAESGGS 252 (359)
T ss_dssp HHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHT---TCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCE
T ss_pred HHHHHHHhCCCcccCCeeEEEEEecccccccchHHHHHHHHHHc---CCEEEEEcCccccCCCHHHHHHHHHHHHHcCCe
Confidence 34567777741 11212238999997654 4467778888777 7899999976 3 24555666666666544
Q ss_pred eEEeccCCHHHHHHHHHhCcEEEeCCC
Q 010448 358 ARGVAKFNIPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 358 v~~~~~~~~~~~~~~~~~adv~v~ps~ 384 (510)
+... .+. .+.+..+|++.....
T Consensus 253 v~~~--~d~---~eav~~aDvVyt~~w 274 (359)
T 1zq6_A 253 LQVS--HDI---DSAYAGADVVYAKSW 274 (359)
T ss_dssp EEEE--CCH---HHHHTTCSEEEEECC
T ss_pred EEEE--CCH---HHHhcCCCEEEECCc
Confidence 4332 222 357899999887653
No 147
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=27.60 E-value=2.6e+02 Score=26.25 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=78.7
Q ss_pred HHHHHhccceeec--CHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 210 KAGILESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 210 ~~~~~~ad~vi~v--S~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+-.-+.+|.|+.= ++...+.+.+. ..+-|| ||-| +...|.. .-.+--
T Consensus 108 rvLs~~~D~iviR~~~~~~~~~lA~~-------------~~vPVI-Na~~-~~~HPtQ----------------aLaDl~ 156 (325)
T 1vlv_A 108 RVLGRMVDAIMFRGYKQETVEKLAEY-------------SGVPVY-NGLT-DEFHPTQ----------------ALADLM 156 (325)
T ss_dssp HHHHTTCSEEEEESSCHHHHHHHHHH-------------HCSCEE-ESCC-SSCCHHH----------------HHHHHH
T ss_pred HHHHHhCCEEEEECCChHHHHHHHHh-------------CCCCEE-eCCC-CCCCcHH----------------HHHHHH
Confidence 3344567877653 55566666541 145555 6665 3556532 122234
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEecc
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAK 363 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~~ 363 (510)
.+++++|-- +...|.|+|-. ...=..-++.++..+ ++++.++|+.. +++.+.+++.+.+.+..+...
T Consensus 157 Ti~e~~g~l---~gl~va~vGD~-~~rva~Sl~~~~~~~---G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~-- 227 (325)
T 1vlv_A 157 TIEENFGRL---KGVKVVFMGDT-RNNVATSLMIACAKM---GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFT-- 227 (325)
T ss_dssp HHHHHHSCS---TTCEEEEESCT-TSHHHHHHHHHHHHT---TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEE--
T ss_pred HHHHHhCCc---CCcEEEEECCC-CcCcHHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE--
Confidence 556777732 23689999994 223356667777766 78999999742 335555666666666444433
Q ss_pred CCHHHHHHHHHhCcEEEeCCC
Q 010448 364 FNIPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 364 ~~~~~~~~~~~~adv~v~ps~ 384 (510)
.+ +.+.+..+|++.....
T Consensus 228 ~d---~~eav~~aDvvyt~~w 245 (325)
T 1vlv_A 228 SN---LEEALAGADVVYTDVW 245 (325)
T ss_dssp SC---HHHHHTTCSEEEECCC
T ss_pred cC---HHHHHccCCEEEeccc
Confidence 22 2357899999988665
No 148
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=27.34 E-value=2.2e+02 Score=22.25 Aligned_cols=108 Identities=15% Similarity=0.207 Sum_probs=62.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh---CcEEEeCCCC-CCccHHHHHHHHh---CCCc
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMRY---GTVP 402 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~---adv~v~ps~~-E~~g~~~~Eama~---G~Pv 402 (510)
..+++|+.+.+. ..+.+...... +..+. ...+.+..-..+.. .|++++-... +.-|..+++.+.. .+|+
T Consensus 4 ~~~ILivdd~~~-~~~~l~~~L~~-~~~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 79 (151)
T 3kcn_A 4 NERILLVDDDYS-LLNTLKRNLSF-DFEVT--TCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVY 79 (151)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHTT-TSEEE--EESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEE
T ss_pred CCeEEEEeCCHH-HHHHHHHHhcc-CceEE--EeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEE
Confidence 356777776542 33344444332 32333 22344444344433 3888875544 5567777665543 5666
Q ss_pred EEecCCC----ccceEEcC-CceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 403 IVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 403 v~s~~gg----~~e~v~~~-~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|...... ..+.+..| ..+++. .|-+.+++.++|..+++.
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~~l~----------KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 80 LMLTGNQDLTTAMEAVNEGQVFRFLN----------KPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EEEECGGGHHHHHHHHHHTCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCeeEEEc----------CCCCHHHHHHHHHHHHHH
Confidence 6543222 22334456 678887 899999999999999885
No 149
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=26.62 E-value=3.2e+02 Score=23.85 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=52.1
Q ss_pred ccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccC---C-----------------HHHHHHH
Q 010448 313 QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF---N-----------------IPLAHMI 372 (510)
Q Consensus 313 ~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~---~-----------------~~~~~~~ 372 (510)
....+..-+..+.|.+.++.+ |.|.|+..+.+...+-+.+.++.+.....- + .+-...+
T Consensus 24 ~~~~~~A~~lg~~LA~~g~~l-V~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~ 102 (216)
T 1ydh_A 24 EVFSDAAIELGNELVKRKIDL-VYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAM 102 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCEE-EECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSCCSEEEEESSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCEE-EECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccccCCCCcccccCCHHHHHHHH
Confidence 334444455555554556655 566565234444555555555444433210 0 1112236
Q ss_pred HHhCcEEEeCCCCCCccHH--HHHHHH------hCCCcEEecCCCc
Q 010448 373 IAGADFILIPSRFEPCGLI--QLHAMR------YGTVPIVASTGGL 410 (510)
Q Consensus 373 ~~~adv~v~ps~~E~~g~~--~~Eama------~G~Pvv~s~~gg~ 410 (510)
+..||.+|.-. -++|.- ++|++. .++||+..+..|.
T Consensus 103 ~~~sda~I~lp--GG~GTLdElfE~lt~~qlg~~~kPvvll~~~gf 146 (216)
T 1ydh_A 103 AQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKTVGLLNVDGY 146 (216)
T ss_dssp HHHCSEEEECS--CSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGT
T ss_pred HHhCCEEEEeC--CCccHHHHHHHHHHHHHhcccCCCEEEecCCcc
Confidence 78899988632 356654 677764 6899999987553
No 150
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=26.54 E-value=2.8e+02 Score=27.01 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=30.4
Q ss_pred HHHHHHHhCcEEEeCCCCCC------ccHHHHHHHHhCCCcEEe--cCCCccce
Q 010448 368 LAHMIIAGADFILIPSRFEP------CGLIQLHAMRYGTVPIVA--STGGLVDT 413 (510)
Q Consensus 368 ~~~~~~~~adv~v~ps~~E~------~g~~~~Eama~G~Pvv~s--~~gg~~e~ 413 (510)
.+.+.++.+|+++......+ +.--.++.|.-|.-+|-. +.||.-|.
T Consensus 268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~ 321 (405)
T 4dio_A 268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG 321 (405)
T ss_dssp HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence 55578899999987643321 445677788878766644 46676554
No 151
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=26.37 E-value=2.6e+02 Score=27.72 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=66.2
Q ss_pred ccChhhHHHHHHhhhhCCcEEEEEecCC------------------hhHHHHHHHHHHHCCCceEEeccC-CHHHHH-HH
Q 010448 313 QKGSDILAAAIPHFIKENVQIIVLGTGK------------------KPMEKQLEQLEILYPEKARGVAKF-NIPLAH-MI 372 (510)
Q Consensus 313 ~Kg~~~li~a~~~l~~~~~~l~i~G~g~------------------~~~~~~~~~l~~~~~~~v~~~~~~-~~~~~~-~~ 372 (510)
.+.++.+.+.+....++--+++|+|.|. +.-.+.++.++.++++.+...+.. +.+.+. +=
T Consensus 218 ~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~ 297 (461)
T 4g65_A 218 SNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEEN 297 (461)
T ss_dssp TTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTT
T ss_pred cchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcC
Confidence 4556666666655433344678888765 123456778888887656566655 344333 24
Q ss_pred HHhCcEEEeCCCC-CCccHHHHHHHHhCCCcEEecCC--CccceEEc
Q 010448 373 IAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVASTG--GLVDTVEE 416 (510)
Q Consensus 373 ~~~adv~v~ps~~-E~~g~~~~Eama~G~Pvv~s~~g--g~~e~v~~ 416 (510)
+..+|+++..+.. |.-=++.+-|-.+|++-+.+... ...++++.
T Consensus 298 i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~ 344 (461)
T 4g65_A 298 IDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQG 344 (461)
T ss_dssp GGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCS
T ss_pred chhhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhc
Confidence 7889999998876 55555667788899987777543 33344443
No 152
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=26.12 E-value=2.7e+02 Score=23.72 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=62.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH--hCCCcEEe
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA 405 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama--~G~Pvv~s 405 (510)
.+++|+.+.+ ...+.+.......+-.+. ...+.+..-..+. ..|++++-... +.-|..+++.+. ..+|+|.-
T Consensus 5 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 5 TSVLIVEDEE-SLADPLAFLLRKEGFEAT--VVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEE
T ss_pred CeEEEEeCCH-HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 4667776554 344445555444443333 2223333333333 46888875544 445676666554 36777754
Q ss_pred cCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 406 STGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 406 ~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.... ..+.+..|..|++. .|.+.+++..+|..++..
T Consensus 82 t~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVT----------KPYSARELIARIRAVLRR 121 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCC----------SSCCHHHHHHHHHHHHTT
T ss_pred eCCCcHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 3322 12233457778876 889999999999998864
No 153
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=25.89 E-value=87 Score=29.58 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=56.3
Q ss_pred cEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEE
Q 010448 302 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFI 379 (510)
Q Consensus 302 ~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~ 379 (510)
+.++.+|-=.- |....+.++..+ ++++++-+.+.+ .+..++.+.+++.. ..+. ...++++. .|++
T Consensus 24 irigiIG~G~i--g~~~~~~~~~~~--~~~~lvav~d~~---~~~a~~~a~~~g~~-~~y~-----d~~ell~~~~iDaV 90 (350)
T 4had_A 24 LRFGIISTAKI--GRDNVVPAIQDA--ENCVVTAIASRD---LTRAREMADRFSVP-HAFG-----SYEEMLASDVIDAV 90 (350)
T ss_dssp EEEEEESCCHH--HHHTHHHHHHHC--SSEEEEEEECSS---HHHHHHHHHHHTCS-EEES-----SHHHHHHCSSCSEE
T ss_pred cEEEEEcChHH--HHHHHHHHHHhC--CCeEEEEEECCC---HHHHHHHHHHcCCC-eeeC-----CHHHHhcCCCCCEE
Confidence 56777775221 223345666554 678888777665 33456666776631 1111 22345654 6899
Q ss_pred EeCCCCCCccHHHHHHHHhCCCcEEec
Q 010448 380 LIPSRFEPCGLIQLHAMRYGTVPIVAS 406 (510)
Q Consensus 380 v~ps~~E~~g~~~~Eama~G~Pvv~s~ 406 (510)
++.+-...-.-.+.+|+.+|++|++=.
T Consensus 91 ~I~tP~~~H~~~~~~al~aGkhVl~EK 117 (350)
T 4had_A 91 YIPLPTSQHIEWSIKAADAGKHVVCEK 117 (350)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred EEeCCCchhHHHHHHHHhcCCEEEEeC
Confidence 888765444455788999999998764
No 154
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=25.87 E-value=1.3e+02 Score=27.72 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=53.0
Q ss_pred cEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEe
Q 010448 302 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 381 (510)
Q Consensus 302 ~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ 381 (510)
..|+.+|--.- |...+++++.+. ++++++-+-+.+ .+..++++.+++... +. ...++++..|+++.
T Consensus 7 ~~igiIG~G~~--g~~~~~~~l~~~--~~~~l~av~d~~---~~~~~~~a~~~~~~~-----~~--~~~~ll~~~D~V~i 72 (308)
T 3uuw_A 7 IKMGMIGLGSI--AQKAYLPILTKS--ERFEFVGAFTPN---KVKREKICSDYRIMP-----FD--SIESLAKKCDCIFL 72 (308)
T ss_dssp CEEEEECCSHH--HHHHTHHHHTSC--SSSEEEEEECSC---HHHHHHHHHHHTCCB-----CS--CHHHHHTTCSEEEE
T ss_pred CcEEEEecCHH--HHHHHHHHHHhC--CCeEEEEEECCC---HHHHHHHHHHcCCCC-----cC--CHHHHHhcCCEEEE
Confidence 46777776221 112244444433 577887555554 233455555554211 22 12345669999998
Q ss_pred CCCCCCccHHHHHHHHhCCCcEEec
Q 010448 382 PSRFEPCGLIQLHAMRYGTVPIVAS 406 (510)
Q Consensus 382 ps~~E~~g~~~~Eama~G~Pvv~s~ 406 (510)
.+....-.-.+.+++..|++|++-.
T Consensus 73 ~tp~~~h~~~~~~al~~gk~vl~EK 97 (308)
T 3uuw_A 73 HSSTETHYEIIKILLNLGVHVYVDK 97 (308)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEECS
T ss_pred eCCcHhHHHHHHHHHHCCCcEEEcC
Confidence 8876555555778999999988754
No 155
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=25.81 E-value=92 Score=24.15 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=63.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-C--CccHHHHHHHHh---CCC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-E--PCGLIQLHAMRY---GTV 401 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E--~~g~~~~Eama~---G~P 401 (510)
..+++|+.+.+ .....+..+....+-.+. ..-+.++.-..+. ..|++++-... + .-|..+++.+.. .+|
T Consensus 6 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 6 HPIIYLVDHQK-DARAALSKLLSPLDVTIQ--CFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHTTSSSEEE--EESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCeEEEEcCCH-HHHHHHHHHHHHCCcEEE--EeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 34677776544 234445555444443333 2223333322332 24777765443 4 456777766653 567
Q ss_pred cEEecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 402 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 402 vv~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
+|...... ..+.+..|..+++. .|-+.++|..+|.+++..
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIE----------KPFIEHVLVHDVQQIING 126 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEE----------SSBCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcChHHhee----------CCCCHHHHHHHHHHHHhc
Confidence 77543322 22344567888988 899999999999999886
No 156
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=25.54 E-value=2.6e+02 Score=24.57 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=57.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh--CCCcEEe
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY--GTVPIVA 405 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~--G~Pvv~s 405 (510)
.+++|+.+.+ .....+.......+..+. ...+.++.-..+. ..|++++-... +.-|+.+++.+.. .+|||.-
T Consensus 38 ~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 38 QRILVIEDDH-DIANVLRMDLTDAGYVVD--HADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEEECCH-HHHHHHHHHHHHCCCEEE--EeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 4566666543 233344444433332222 2223333322332 35777765443 3346666665543 4666654
Q ss_pred cCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 406 STGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 406 ~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
....- .+.+..|..||+. .|.+.++|..+|..++.
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~----------Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLI----------KPFHPDELLARVKVQLR 153 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHC
T ss_pred ECCCCHHHHHHHHHCCCcEEEE----------CCCCHHHHHHHHHHHHh
Confidence 33222 2234457789988 89999999999998876
No 157
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=25.53 E-value=2.2e+02 Score=21.63 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=61.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh---CCCcEE
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPIV 404 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~---G~Pvv~ 404 (510)
.+++|+.+.+ .....+..+....+........-+....-..+. ..|++++-... ..-|..+++.+.. .+|+|.
T Consensus 4 ~~Ilivdd~~-~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ 82 (133)
T 3b2n_A 4 TSLIIAEDQN-MLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVII 82 (133)
T ss_dssp EEEEEECSCH-HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred eEEEEECCCH-HHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEE
Confidence 3566666544 344445554444332111112223333333333 46888876554 3457777776653 567765
Q ss_pred ec-CCC---ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 405 AS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 405 s~-~gg---~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.. ... ..+.+..|..+++. .|.+.+++.++|..++..
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 83 VTTFKRPGYFEKAVVNDVDAYVL----------KERSIEELVETINKVNNG 123 (133)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEE----------TTSCHHHHHHHHHHHHC-
T ss_pred EecCCCHHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHcC
Confidence 43 222 22344567889988 899999999999887754
No 158
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=25.46 E-value=2e+02 Score=21.14 Aligned_cols=107 Identities=12% Similarity=0.187 Sum_probs=58.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHH--HhCcEEEeCCCC-CCccHHHHHHHH--hCCCcEEec
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMR--YGTVPIVAS 406 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~adv~v~ps~~-E~~g~~~~Eama--~G~Pvv~s~ 406 (510)
+++|+.+.+ .....+.+.....+..+.. ..+....-..+ ...|++++-... +..|..+++.+. ..+|+|...
T Consensus 3 ~ilivdd~~-~~~~~l~~~l~~~~~~v~~--~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 3 NVLIVEDEQ-AIRRFLRTALEGDGMRVFE--AETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp EEEEECSCH-HHHHHHHHHHHTTTCEEEE--ESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEEeCCH-HHHHHHHHHHhcCCCEEEE--eCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 456666544 2344445444443333322 22322222222 246887764433 335667777664 346666443
Q ss_pred -CCCc---cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 407 -TGGL---VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 407 -~gg~---~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.... .+.+..|..+++. .|-+.+++..++..++..
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLS----------KPFGIGELQARLRVALRR 118 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEe----------CCcCHHHHHHHHHHHHHh
Confidence 2221 2234457788887 899999999999887753
No 159
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=25.27 E-value=3.9e+02 Score=24.28 Aligned_cols=92 Identities=14% Similarity=0.001 Sum_probs=50.7
Q ss_pred hhhHHHHHHhhhhCCcEEEEEec-CC---hhHHHHHHHHHHHCCCceEEeccCCHHH----HHHHHHhCcEEEeCCCC--
Q 010448 316 SDILAAAIPHFIKENVQIIVLGT-GK---KPMEKQLEQLEILYPEKARGVAKFNIPL----AHMIIAGADFILIPSRF-- 385 (510)
Q Consensus 316 ~~~li~a~~~l~~~~~~l~i~G~-g~---~~~~~~~~~l~~~~~~~v~~~~~~~~~~----~~~~~~~adv~v~ps~~-- 385 (510)
+..-++.+.++...--++.++++ +. ....+.+++.+.+.+..+.........+ ...+....|+++.+...
T Consensus 126 ~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~ 205 (302)
T 3lkv_A 126 VEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTV 205 (302)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcch
Confidence 34455555555322234555554 33 1344567777777776555444333322 22456778988887642
Q ss_pred -CCccHHHHHHHHhCCCcEEecC
Q 010448 386 -EPCGLIQLHAMRYGTVPIVAST 407 (510)
Q Consensus 386 -E~~g~~~~Eama~G~Pvv~s~~ 407 (510)
........-+..+++|+++...
T Consensus 206 ~~~~~~i~~~~~~~~iPv~~~~~ 228 (302)
T 3lkv_A 206 ASAIEGMIVAANQAKTPVFGAAT 228 (302)
T ss_dssp HHTHHHHHHHHHHTTCCEEESSH
T ss_pred hhHHHHHHHHHhhcCCceeeccc
Confidence 1223334456778999998763
No 160
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=25.04 E-value=2.1e+02 Score=21.26 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=60.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcEE
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 404 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv~ 404 (510)
.+++++.+.+ .....+.......+..+. ...+.+..-..+. ..|++++-... +.-|..+++.+. ..+|+|.
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1srr_A 4 EKILIVDDQS-GIRILLNEVFNKEGYQTF--QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVII 80 (124)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEE
T ss_pred ceEEEEeCCH-HHHHHHHHHHHHCCcEEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEE
Confidence 3566776544 334445554444443332 2233333333332 46888875444 335666666654 3677765
Q ss_pred ecCCCc----cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHH
Q 010448 405 ASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 450 (510)
Q Consensus 405 s~~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~ 450 (510)
.....- .+....|..+++. .|-+.+++.+++..++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 81 MTAYGELDMIQESKELGALTHFA----------KPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EESSCCHHHHHHHHHHTCCCEEE----------SSCCHHHHHHHHHHHSC
T ss_pred EEccCchHHHHHHHhcChHhhcc----------CCCCHHHHHHHHHHHhc
Confidence 432221 2233457788887 89999999999987654
No 161
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=24.50 E-value=3.1e+02 Score=25.87 Aligned_cols=130 Identities=13% Similarity=0.089 Sum_probs=78.7
Q ss_pred HHhccceeec--CHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHH
Q 010448 213 ILESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 290 (510)
Q Consensus 213 ~~~ad~vi~v--S~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (510)
-+.+|.|+.= ++...+.+.++ ..+-|| ||-+ +.+.|.. .-.+--.++
T Consensus 97 s~~~D~IviR~~~~~~~~~lA~~-------------~~vPVI-Na~~-~~~HPtQ----------------~LaDl~Ti~ 145 (333)
T 1duv_G 97 GRMYDGIQYRGYGQEIVETLAEY-------------ASVPVW-NGLT-NEFHPTQ----------------LLADLLTMQ 145 (333)
T ss_dssp TTTCSEEEEECSCHHHHHHHHHH-------------HSSCEE-ESCC-SSCCHHH----------------HHHHHHHHH
T ss_pred HHhCCEEEEEcCCchHHHHHHHh-------------CCCCeE-cCCC-CCCCchH----------------HHHHHHHHH
Confidence 3457876643 55566666541 135555 6665 5666632 112234556
Q ss_pred HH-hCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEeccCC
Q 010448 291 AE-VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFN 365 (510)
Q Consensus 291 ~~-~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~~~~ 365 (510)
++ +|... +...|.|+|-. ...=..-++.++..+ ++.+.++|+.. +++.+.+++.+.+.+..+... -+
T Consensus 146 e~~~g~~l--~gl~ia~vGD~-~~~va~Sl~~~~~~~---G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~--~d 217 (333)
T 1duv_G 146 EHLPGKAF--NEMTLVYAGDA-RNNMGNSMLEAAALT---GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLT--ED 217 (333)
T ss_dssp HHSTTCCG--GGCEEEEESCT-TSHHHHHHHHHHHHH---CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEE--SC
T ss_pred HHhcCCCC--CCcEEEEECCC-ccchHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE--EC
Confidence 77 66211 23689999996 233356677777776 78999999742 345566677777776555433 22
Q ss_pred HHHHHHHHHhCcEEEeCCC
Q 010448 366 IPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 366 ~~~~~~~~~~adv~v~ps~ 384 (510)
+.+.+..+|++.....
T Consensus 218 ---~~eav~~aDvvytd~w 233 (333)
T 1duv_G 218 ---VAKGVEGADFIYTDVW 233 (333)
T ss_dssp ---HHHHHTTCSEEEECCS
T ss_pred ---HHHHhCCCCEEEeCCc
Confidence 2357899999988655
No 162
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=24.41 E-value=2.5e+02 Score=21.73 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=57.7
Q ss_pred EEEEEecCChhHHHHHHHHHH--HCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcE
Q 010448 332 QIIVLGTGKKPMEKQLEQLEI--LYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 403 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~--~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv 403 (510)
+++|+.+.+ ...+.+..... ..+..+... .-+....-..+. ..|++++-... +.-|..+++.+. ..+|+|
T Consensus 4 ~ILivdd~~-~~~~~l~~~L~~~~~~~~~~~~-~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii 81 (141)
T 3cu5_A 4 RILIVDDEK-LTRDGLIANINWKALSFDQIDQ-ADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVI 81 (141)
T ss_dssp EEEEECSCH-HHHHHHHHHCCGGGSCCSEEEE-ESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEE
T ss_pred eEEEEeCCH-HHHHHHHHHHHHccCCcEEeee-cccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Confidence 566776554 23333333332 122223212 223333333443 35888875544 345777776654 367776
Q ss_pred EecC-C---CccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VAST-G---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~-g---g~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.... . ...+.+..|..+++. .|-+.+++.++|..++..
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 82 FMSGYSDKEYLKAAIKFRAIRYVE----------KPIDPSEIMDALKQSIQT 123 (141)
T ss_dssp EECCSTTTCCC------CCCEEEC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHhCCccEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 5432 2 233455567788887 899999999999888764
No 163
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=24.35 E-value=2.6e+02 Score=21.92 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=63.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv 403 (510)
..+++|+.+.. .....+.......+-.+. ..-+.+.....+. ..|++++-... +.-|..+++.+. ..+|+|
T Consensus 7 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 7 NYTVMLVDDEQ-PILNSLKRLIKRLGCNII--TFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCeEEEEcCCH-HHHHHHHHHHHHcCCeEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 46777777654 234445554444443333 2234444434444 35888775544 445666666553 367776
Q ss_pred EecCCCc----cceEEcC-CceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VASTGGL----VDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~gg~----~e~v~~~-~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
......- .+.+..| ..+++. .|-+.+++..+|..++..
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~----------kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLL----------KPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeee----------CCCCHHHHHHHHHHHHHH
Confidence 5432221 2223344 678887 889999999999988875
No 164
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=24.23 E-value=2.9e+02 Score=23.33 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=62.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEeCCCC-CCccHHHHHHHH---hCCCcEEecC
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMR---YGTVPIVAST 407 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv~s~~ 407 (510)
+++|+.+.+ ...+.+.......+ .+.. ..+.+.....+...|++++-... +..|..+++.+. ..+|+|....
T Consensus 4 ~ilivdd~~-~~~~~l~~~L~~~~-~v~~--~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~ 79 (220)
T 1p2f_A 4 KIAVVDDDK-NILKKVSEKLQQLG-RVKT--FLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTL 79 (220)
T ss_dssp EEEEECSCH-HHHHHHHHHHTTTE-EEEE--ESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred eEEEEeCCH-HHHHHHHHHHHhCC-CEEE--ECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEc
Confidence 566666544 34444555544443 3322 22333332333567888875444 446777766654 4677775532
Q ss_pred CC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 408 GG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 408 gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.. ..+.+..|..|++. .|.+.+++.++|..++..
T Consensus 80 ~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 80 LSDDESVLKGFEAGADDYVT----------KPFNPEILLARVKRFLER 117 (220)
T ss_dssp CCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEE----------CCCCHHHHHHHHHHHHcc
Confidence 22 22334457889988 899999999999998864
No 165
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=24.19 E-value=2.1e+02 Score=24.44 Aligned_cols=104 Identities=13% Similarity=0.217 Sum_probs=59.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCCCCccHHHHHHHHh---CCCcEEec
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRFEPCGLIQLHAMRY---GTVPIVAS 406 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~E~~g~~~~Eama~---G~Pvv~s~ 406 (510)
+++|+.+.+ .....+.......+-.+. ...+.+..-..+. ..|++++| +.-|..+++.+.. .+|+|.-.
T Consensus 2 ~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii~lt 75 (223)
T 2hqr_A 2 RVLLIEKNS-VLGGEIEKGLNVKGFMAD--VTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSS 75 (223)
T ss_dssp CEEEECSCH-HHHHHHHHHHGGGTCCEE--EESSHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEEEEE
T ss_pred EEEEEcCCH-HHHHHHHHHHHHCCcEEE--EECCHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEEEEE
Confidence 345555443 344445555444433343 2234444434444 35888833 3356666665543 67777543
Q ss_pred CCCc----cceEEcCCceeEeccccccCCCCCcc-CHHHHHHHHHHHHHh
Q 010448 407 TGGL----VDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 451 (510)
Q Consensus 407 ~gg~----~e~v~~~~~G~l~~~~~~~~~~~~~~-d~~~la~~i~~ll~~ 451 (510)
...- .+.+..|..|++. .|. +.+++..+|..++..
T Consensus 76 ~~~~~~~~~~~~~~Ga~~~l~----------Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 76 DNPTSEEEVHAFEQGADDYIA----------KPYRSIKALVARIEARLRF 115 (223)
T ss_dssp SSCCHHHHHHHHHHTCSEEEE----------TTCSCTHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHcCCCEEEE----------CCCCCHHHHHHHHHHHhcc
Confidence 3222 2234457889987 888 999999999988754
No 166
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=23.92 E-value=97 Score=25.76 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=40.7
Q ss_pred cccChh--hHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHhCcEEEe
Q 010448 312 EQKGSD--ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 381 (510)
Q Consensus 312 ~~Kg~~--~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~adv~v~ 381 (510)
..|+.| +.++++......+.-+++-|+++ +...++.+..+++.+|...+ +++.....+.++||-|+.
T Consensus 90 ~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~D--F~plv~~lr~~~G~~V~v~g-~~~~~s~~L~~~ad~fi~ 158 (165)
T 2qip_A 90 AKGDWDVGITLDAIEIAPDVDRVILVSGDGD--FSLLVERIQQRYNKKVTVYG-VPRLTSQTLIDCADNFVA 158 (165)
T ss_dssp CSCCCHHHHHHHHHHHGGGCSEEEEECCCGG--GHHHHHHHHHHHCCEEEEEE-CGGGSCHHHHHHSSEEEE
T ss_pred cCCCccHHHHHHHHHhhccCCEEEEEECChh--HHHHHHHHHHHcCcEEEEEe-CCCcChHHHHHhCCEEEe
Confidence 345554 55677765433355555666665 77777777765565666554 332233468899998874
No 167
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=23.76 E-value=2.3e+02 Score=21.04 Aligned_cols=108 Identities=11% Similarity=0.161 Sum_probs=61.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH--hCCCcEEe
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA 405 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama--~G~Pvv~s 405 (510)
.+++|+.+.+ ...+.+.......+-.+. ..-+....-..+. ..|++++-... +.-|..+++.+. ..+|+|..
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 80 (123)
T 1xhf_A 4 PHILIVEDEL-VTRNTLKSIFEAEGYDVF--EATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFL 80 (123)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEE
T ss_pred ceEEEEeCCH-HHHHHHHHHHhhCCcEEE--EeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 4566676544 234444444444332332 2223333333333 35888775544 335666666553 46777654
Q ss_pred cC-CCc---cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 406 ST-GGL---VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 406 ~~-gg~---~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.. ... .+.+..|..+++. .|-+.+++...+..++..
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYIT----------KPFNPRELTIRARNLLSR 120 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 32 221 2234557888988 899999999999887753
No 168
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=23.59 E-value=2.2e+02 Score=20.94 Aligned_cols=107 Identities=11% Similarity=0.167 Sum_probs=61.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh---CCCcEEe
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPIVA 405 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~---G~Pvv~s 405 (510)
+++++.+.+ .....+.......+-.+. ..-+.+.....+. ..|++++-... +..|..+++.+.. .+|+|..
T Consensus 2 ~ilivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 2 RVLVVEDNA-LLRHHLKVQIQDAGHQVD--DAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred eEEEEeCcH-HHHHHHHHHHhhcCCEEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 456666543 334445554445443333 2233343333443 35888775443 4467777777653 5666654
Q ss_pred cC-CCc---cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 406 ST-GGL---VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 406 ~~-gg~---~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.. +.. .+.+..|..+++. .|-+.+++...+..++..
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVT----------KPFHIEEVMARMQALMRR 118 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEE----------CCCCHHHHHHHHHHHHHh
Confidence 32 221 2334457788987 899999999999887753
No 169
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=23.52 E-value=2.3e+02 Score=21.09 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=61.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH-----hCCCcE
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTVPI 403 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama-----~G~Pvv 403 (510)
+++++.+.+ ...+.+.......+..+. ..-+.+..-..+. ..|++++-... +..|..+++.+. ..+|+|
T Consensus 4 ~ilivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 4 RILVVEDEA-PIREMVCFVLEQNGFQPV--EAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred EEEEEcCCH-HHHHHHHHHHHHCCceEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 566776554 234445554444443333 2223333323333 35777765433 335777777765 356776
Q ss_pred Eec-CCC---ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~-~gg---~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
... ... ..+.+..|..+++. .|-+.+++.++|..++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCIT----------KPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEE----------ESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEe----------CCCCHHHHHHHHHHHHhc
Confidence 543 221 23345567788887 889999999999887764
No 170
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=23.43 E-value=2.2e+02 Score=20.86 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=60.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH--hCCCcEEec
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVAS 406 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama--~G~Pvv~s~ 406 (510)
+++++.+.+ .....+.......+-.+. ...+.+..-..+. ..|++++-... +..|..+++.+. ...|+|...
T Consensus 3 ~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 3 KILIVDDEK-PISDIIKFNMTKEGYEVV--TAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred eEEEEcCCH-HHHHHHHHHHHhcCcEEE--EecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 456666544 334445554444443333 2223333323332 46888875544 345666666553 467777553
Q ss_pred CCCcc----ceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 407 TGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 407 ~gg~~----e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
...-. ..+..|..+++. .|-+.+++.+++..++..
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVT----------KPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEe----------CCCCHHHHHHHHHHHHcc
Confidence 32222 233457788988 899999999999887653
No 171
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=23.39 E-value=1.3e+02 Score=25.97 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=15.5
Q ss_pred hhHHHHHHhhhhCCcEEEEEecCC
Q 010448 317 DILAAAIPHFIKENVQIIVLGTGK 340 (510)
Q Consensus 317 ~~li~a~~~l~~~~~~l~i~G~g~ 340 (510)
.++++++.+.++..-++-++|-++
T Consensus 81 ~Dil~al~~a~~~~~kIavvg~~~ 104 (196)
T 2q5c_A 81 FDTMRAVYNAKRFGNELALIAYKH 104 (196)
T ss_dssp HHHHHHHHHHGGGCSEEEEEEESS
T ss_pred hHHHHHHHHHHhhCCcEEEEeCcc
Confidence 456677777766444777777654
No 172
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.27 E-value=3.4e+02 Score=22.92 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=64.6
Q ss_pred cEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcEE
Q 010448 331 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 404 (510)
Q Consensus 331 ~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv~ 404 (510)
.+++|+.+.+ .....+.......+-.+. ...+.+..-..+. ..|++++-... +.-|..+++.+. ..+|+|.
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 3 VRVLVVEDER-DLADLITEALKKEMFTVD--VCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CEEEEECSSH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred ceEEEEeCCH-HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 4566666544 344445555444443343 2234444333333 35888775544 446777777664 3677775
Q ss_pred ecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 405 ASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 405 s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
..... ..+.+..|..|++. .|.+.+++..+|..++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLP----------KPFDLRELIARVRALIRR 120 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 53322 22345567888987 899999999999988764
No 173
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=23.21 E-value=2.4e+02 Score=21.11 Aligned_cols=109 Identities=14% Similarity=0.231 Sum_probs=64.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC-CCccHHHHHHHH---hCCCcE
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 403 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~-E~~g~~~~Eama---~G~Pvv 403 (510)
+.+++++.+.+ ...+.+.......+-.+. ..-+.+..-..+.. .|++++-... ..-|..+++.+. ..+|+|
T Consensus 3 ~~~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 3 DYTVHIVDDEE-PVRKSLAFMLTMNGFAVK--MHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCEEEEEESSH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCH-HHHHHHHHHHHhCCcEEE--EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 35677777654 234445555444443333 22344444344443 5777765443 345777776664 356777
Q ss_pred EecC-CC---ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 404 VAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 404 ~s~~-gg---~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
.... .. ..+.+..|..+++. .|.+.+++.++|..++..
T Consensus 80 ~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 80 VITGHGDVPMAVEAMKAGAVDFIE----------KPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEECTTCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHTT
T ss_pred EEECCCCHHHHHHHHHhCHHHhee----------CCCCHHHHHHHHHHHHHh
Confidence 5432 22 22334567889988 899999999999887754
No 174
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=23.15 E-value=3.8e+02 Score=23.48 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=49.5
Q ss_pred hhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEe-ccCCHHHHHHHHHhCcEEEeCCCCCCccHHHHHH
Q 010448 317 DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHA 395 (510)
Q Consensus 317 ~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~-~~~~~~~~~~~~~~adv~v~ps~~E~~g~~~~Ea 395 (510)
......++.|.+....++++-... .+.+++++.... +... ..+..+ .+..+|+++..+-.+.....+.++
T Consensus 41 ~va~~ka~~Ll~~GA~VtVvap~~---~~~l~~l~~~~~--i~~i~~~~~~~----dL~~adLVIaAT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 41 TIATRRIKGFLQEGAAITVVAPTV---SAEINEWEAKGQ--LRVKRKKVGEE----DLLNVFFIVVATNDQAVNKFVKQH 111 (223)
T ss_dssp HHHHHHHHHHGGGCCCEEEECSSC---CHHHHHHHHTTS--CEEECSCCCGG----GSSSCSEEEECCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC---CHHHHHHHHcCC--cEEEECCCCHh----HhCCCCEEEECCCCHHHHHHHHHH
Confidence 344455555655567777776543 234666665432 4332 334433 467899998877655444445554
Q ss_pred HHhCCCcEEecCCCccceEE
Q 010448 396 MRYGTVPIVASTGGLVDTVE 415 (510)
Q Consensus 396 ma~G~Pvv~s~~gg~~e~v~ 415 (510)
...|+||-+.|.+...+++.
T Consensus 112 ak~gi~VNvvD~p~~~~f~~ 131 (223)
T 3dfz_A 112 IKNDQLVNMASSFSDGNIQI 131 (223)
T ss_dssp SCTTCEEEC-----CCSEEC
T ss_pred HhCCCEEEEeCCcccCeEEE
Confidence 44899999888776555443
No 175
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=23.08 E-value=44 Score=30.70 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.3
Q ss_pred hhhHHHHHHHCCCcEEEEee
Q 010448 6 STKLDSFIQANGHRVMTIAP 25 (510)
Q Consensus 6 ~~~la~~l~~~Gh~V~vi~p 25 (510)
=..|++.|.++||+|++++-
T Consensus 13 G~~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 13 GTALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEEC
Confidence 35789999999999999873
No 176
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=22.81 E-value=1.8e+02 Score=27.55 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=55.6
Q ss_pred CcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcE
Q 010448 301 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADF 378 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv 378 (510)
++.|+.+|-- .-+...++.++. .++++++-+-+.+ .+..++.+.+++. ...+ ....++++. .|+
T Consensus 26 ~irvgiiG~G--~~~~~~~~~~~~---~~~~~lvav~d~~---~~~a~~~a~~~~~-~~~~-----~~~~~ll~~~~vD~ 91 (361)
T 3u3x_A 26 ELRFAAVGLN--HNHIYGQVNCLL---RAGARLAGFHEKD---DALAAEFSAVYAD-ARRI-----ATAEEILEDENIGL 91 (361)
T ss_dssp CCEEEEECCC--STTHHHHHHHHH---HTTCEEEEEECSC---HHHHHHHHHHSSS-CCEE-----SCHHHHHTCTTCCE
T ss_pred CcEEEEECcC--HHHHHHHHHHhh---cCCcEEEEEEcCC---HHHHHHHHHHcCC-Cccc-----CCHHHHhcCCCCCE
Confidence 3678888852 123334455543 3688888777665 3345666667652 1111 122346664 799
Q ss_pred EEeCCCCCCccHHHHHHHHhCCCcEEec
Q 010448 379 ILIPSRFEPCGLIQLHAMRYGTVPIVAS 406 (510)
Q Consensus 379 ~v~ps~~E~~g~~~~Eama~G~Pvv~s~ 406 (510)
+++.+-...-.-.+.+|+.+|++|++-.
T Consensus 92 V~I~tp~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 92 IVSAAVSSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred EEEeCChHHHHHHHHHHHHCCCeEEEeC
Confidence 9887754333445678999999999864
No 177
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=22.74 E-value=2.3e+02 Score=26.39 Aligned_cols=136 Identities=16% Similarity=0.133 Sum_probs=77.6
Q ss_pred HHhccceee--cCHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHHHHH
Q 010448 213 ILESDMVLT--VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 290 (510)
Q Consensus 213 ~~~ad~vi~--vS~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (510)
-+.+|.|+. .++...+.+.++ - .+-|| ||-|-+..+|.. .-.+--.++
T Consensus 98 s~~~D~iviR~~~~~~~~~la~~--~-----------~vPVI-Nag~g~~~HPtQ----------------~LaDl~Ti~ 147 (308)
T 1ml4_A 98 EQYCDVIVIRHPKEGAARLAAEV--A-----------EVPVI-NAGDGSNQHPTQ----------------TLLDLYTIK 147 (308)
T ss_dssp TTTCSEEEEEESSTTHHHHHHHT--C-----------SSCEE-EEEETTSCCHHH----------------HHHHHHHHH
T ss_pred HHhCcEEEEecCChhHHHHHHHh--C-----------CCCEE-eCccCCccCcHH----------------HHHHHHHHH
Confidence 345777665 345556666542 1 34444 776655566632 112234566
Q ss_pred HHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHH
Q 010448 291 AEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAH 370 (510)
Q Consensus 291 ~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~ 370 (510)
+++|-- +...|.|+|-+....=...++.++..+ ++++.++|+..-...+.+.+.+.+.+..+... .+. .
T Consensus 148 e~~g~l---~gl~va~vGD~~~~rva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~--~d~---~ 216 (308)
T 1ml4_A 148 KEFGRI---DGLKIGLLGDLKYGRTVHSLAEALTFY---DVELYLISPELLRMPRHIVEELREKGMKVVET--TTL---E 216 (308)
T ss_dssp HHSSCS---SSEEEEEESCTTTCHHHHHHHHHGGGS---CEEEEEECCGGGCCCHHHHHHHHHTTCCEEEE--SCT---H
T ss_pred HHhCCC---CCeEEEEeCCCCcCchHHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHcCCeEEEE--cCH---H
Confidence 777632 236899999875444466777777766 79999999743111222333444555444332 222 2
Q ss_pred HHHHhCcEEEeCCCC-CCcc
Q 010448 371 MIIAGADFILIPSRF-EPCG 389 (510)
Q Consensus 371 ~~~~~adv~v~ps~~-E~~g 389 (510)
+.+..+|++...... |.+|
T Consensus 217 eav~~aDvvyt~~~q~er~~ 236 (308)
T 1ml4_A 217 DVIGKLDVLYVTRIQKERFP 236 (308)
T ss_dssp HHHTTCSEEEECCCCGGGSS
T ss_pred HHhcCCCEEEECCccccccC
Confidence 468999998887654 4454
No 178
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.47 E-value=2.6e+02 Score=20.98 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=62.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHH--HhCcEEEeCCCC-CCccHHHHHHHHh-----CCC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRY-----GTV 401 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~adv~v~ps~~-E~~g~~~~Eama~-----G~P 401 (510)
..+++|+.+.+ .....+.+...+.+-.+.. ..+.++....+ ...|++++-... +.-|..+++.+.. ..|
T Consensus 6 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 6 SKRILVVDDDQ-AMAAAIERVLKRDHWQVEI--AHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHTTCEEEE--ESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CccEEEEECCH-HHHHHHHHHHHHCCcEEEE--eCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 45677777544 2344455555554433432 23333333333 345777775544 4567778877753 234
Q ss_pred cEEecCCC---ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 402 PIVASTGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 402 vv~s~~gg---~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
++.+.... ..+.+..|..+++. .|-+.+++.++|.+....
T Consensus 83 ii~~~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 83 ILVVSGLDKAKLQQAVTEGADDYLE----------KPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EEEECCSCSHHHHHHHHHTCCEEEC----------SSCCHHHHHHHHHHHHC-
T ss_pred EEEEeCCChHHHHHHHHhChHHHhh----------CCCCHHHHHHHHHHHcCC
Confidence 44443222 12334457788887 899999999999887764
No 179
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=21.27 E-value=75 Score=26.40 Aligned_cols=37 Identities=16% Similarity=0.002 Sum_probs=25.7
Q ss_pred HHHHhCcEEEeCCC-CCCccHHHHH---HHHhCCCcEEecC
Q 010448 371 MIIAGADFILIPSR-FEPCGLIQLH---AMRYGTVPIVAST 407 (510)
Q Consensus 371 ~~~~~adv~v~ps~-~E~~g~~~~E---ama~G~Pvv~s~~ 407 (510)
..+..||++|.--. .++-.-+.+| |.|.|+||++-..
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~~ 114 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIP 114 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEEc
Confidence 37899999976542 2333444444 8899999998753
No 180
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=21.02 E-value=2.5e+02 Score=20.50 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=58.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHH---hCCCcEEe
Q 010448 332 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIVA 405 (510)
Q Consensus 332 ~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama---~G~Pvv~s 405 (510)
+++++.+.+ .....+.......+-.+. ..-+.+..-..+. ..|++++-... +..|..+++.+. ...|+|..
T Consensus 3 ~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 3 RILVVDDEP-NIRELLKEELQEEGYEID--TAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEEEeCCH-HHHHHHHHHHHHCCCEEE--EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 456666544 344445555444443333 2223343333433 35888775544 345676766654 35676643
Q ss_pred c-CCCc-cceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHH
Q 010448 406 S-TGGL-VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 449 (510)
Q Consensus 406 ~-~gg~-~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll 449 (510)
. .... .+....|..+++. .|.+.+++..++..++
T Consensus 80 s~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYRSDMSSWAADEYVV----------KSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGGGCGGGGGSSEEEE----------CCSSTHHHHHHHHHHT
T ss_pred ECCcchHHHHHhccccceEE----------CCCCHHHHHHHHHHHh
Confidence 2 2211 2334456778887 8889999998887653
No 181
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=20.91 E-value=3.9e+02 Score=22.72 Aligned_cols=39 Identities=10% Similarity=-0.038 Sum_probs=28.7
Q ss_pred HHHHhCcEEEeCCCCCCccHH--HHHHHH------hCCCcEEecCCCcc
Q 010448 371 MIIAGADFILIPSRFEPCGLI--QLHAMR------YGTVPIVASTGGLV 411 (510)
Q Consensus 371 ~~~~~adv~v~ps~~E~~g~~--~~Eama------~G~Pvv~s~~gg~~ 411 (510)
.+...||.+|.-. -++|.- ++|++. .++||+.-+..|..
T Consensus 93 ~~~~~sda~IvlP--GG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~ 139 (191)
T 1t35_A 93 KMSELADGFISMP--GGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYF 139 (191)
T ss_dssp HHHHHCSEEEECS--CCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTT
T ss_pred HHHHHCCEEEEeC--CCccHHHHHHHHHHHHHhCCCCCCEEEecCCccc
Confidence 3678899988633 356764 888885 78999999875543
No 182
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.85 E-value=3e+02 Score=21.44 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=63.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHH-CCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC-CCccHHHHHHHHh---CCCc
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEIL-YPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTVP 402 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~-E~~g~~~~Eama~---G~Pv 402 (510)
..+++|+.+.+ .....+...... .+..+.. ...+.+.....+.. .|++++-... +.-|..+++.+.. .+|+
T Consensus 5 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~v~~-~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHP-IVREGYRRLIERRPGYAVVA-EAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHTTSTTEEEEE-EESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcH-HHHHHHHHHHhhCCCcEEEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 45677777554 344445555444 2322221 22333443344443 5888876544 4456766666543 6777
Q ss_pred EEecCCC----ccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 403 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 403 v~s~~gg----~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|+..... ..+.+..|..+++. .|-+.+++.++|..++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVT----------KSSDPAELVQAIEAILAG 125 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEE----------TTSCTTHHHHHHHHHTTT
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEe----------cCCCHHHHHHHHHHHHhC
Confidence 7543222 22234457788887 888999999999888765
No 183
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=20.66 E-value=2.9e+02 Score=21.15 Aligned_cols=110 Identities=9% Similarity=0.081 Sum_probs=62.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHC-CCceEEeccCCHHHHHHHHH--hCcEEEeCCCC-CCccHHHHHHHHh---CCCc
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILY-PEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVP 402 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~--~adv~v~ps~~-E~~g~~~~Eama~---G~Pv 402 (510)
..+++|+.+.+. ....+....... +..+.. ...+.+..-..+. ..|++++-... +..|..+++.+.. ..|+
T Consensus 9 ~~~iLivdd~~~-~~~~l~~~L~~~~~~~~v~-~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 86 (143)
T 2qv0_A 9 KMKVIIVEDEFL-AQQELSWLINTHSQMEIVG-SFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFI 86 (143)
T ss_dssp -CEEEEECSCHH-HHHHHHHHHHHHSCCEEEE-EESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEE
T ss_pred ceEEEEEcCCHH-HHHHHHHHHHhCCCceEEE-EeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceE
Confidence 567778876552 334444444433 322221 2233443333443 35888876554 4467777777754 3344
Q ss_pred EE-ecCC-CccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHHHh
Q 010448 403 IV-ASTG-GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 451 (510)
Q Consensus 403 v~-s~~g-g~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~ 451 (510)
|. +... ...+.+..|..+++. .|-+.+++..+|..++..
T Consensus 87 i~~s~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 87 VFITAWKEHAVEAFELEAFDYIL----------KPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EEEESCCTTHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhCCcceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 43 3322 222334457788887 889999999999988875
No 184
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=20.41 E-value=4e+02 Score=24.88 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=50.1
Q ss_pred CcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcE
Q 010448 301 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADF 378 (510)
Q Consensus 301 ~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv 378 (510)
+..++.+|--.. |....+.++... ++++++-+-+.+++ ..+ ...++ +..+ ....++++. .|+
T Consensus 7 ~~rvgiiG~G~~--g~~~~~~~~~~~--~~~~l~av~d~~~~---~~~---~~~~~-~~~~-----~~~~~ll~~~~vD~ 70 (352)
T 3kux_A 7 KIKVGLLGYGYA--SKTFHAPLIMGT--PGLELAGVSSSDAS---KVH---ADWPA-IPVV-----SDPQMLFNDPSIDL 70 (352)
T ss_dssp CEEEEEECCSHH--HHHTHHHHHHTS--TTEEEEEEECSCHH---HHH---TTCSS-CCEE-----SCHHHHHHCSSCCE
T ss_pred CceEEEECCCHH--HHHHHHHHHhhC--CCcEEEEEECCCHH---HHH---hhCCC-CceE-----CCHHHHhcCCCCCE
Confidence 466777775221 112244555443 57777755555421 111 22222 2211 122346665 899
Q ss_pred EEeCCCCCCccHHHHHHHHhCCCcEEec
Q 010448 379 ILIPSRFEPCGLIQLHAMRYGTVPIVAS 406 (510)
Q Consensus 379 ~v~ps~~E~~g~~~~Eama~G~Pvv~s~ 406 (510)
++..+-...-.-.+..|+.+|++|++-.
T Consensus 71 V~i~tp~~~H~~~~~~al~aGkhV~~EK 98 (352)
T 3kux_A 71 IVIPTPNDTHFPLAQSALAAGKHVVVDK 98 (352)
T ss_dssp EEECSCTTTHHHHHHHHHHTTCEEEECS
T ss_pred EEEeCChHHHHHHHHHHHHCCCcEEEEC
Confidence 9988865554555778999999998754
No 185
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=20.36 E-value=2.8e+02 Score=26.13 Aligned_cols=133 Identities=12% Similarity=0.115 Sum_probs=79.3
Q ss_pred HHHHHhccceeec--CHHHHHHHhcCCCCCCchhhhhhcCCceEecCCCCCCCCCCCCccccccCCCcCChhhchHHHHH
Q 010448 210 KAGILESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 287 (510)
Q Consensus 210 ~~~~~~ad~vi~v--S~~~~~~l~~~~~~g~~~~~~~~~~ki~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (510)
+-.-+.+|.|+.= ++...+.+.++ ..+-|| ||-+ +.+.|.. .-.+--
T Consensus 95 rvLs~~~D~IviR~~~~~~~~~lA~~-------------s~vPVI-Na~~-~~~HPtQ----------------~LaDl~ 143 (335)
T 1dxh_A 95 RVLGRMYDAIEYRGFKQEIVEELAKF-------------AGVPVF-NGLT-DEYHPTQ----------------MLADVL 143 (335)
T ss_dssp HHHHHHCSEEEEECSCHHHHHHHHHH-------------SSSCEE-EEEC-SSCCHHH----------------HHHHHH
T ss_pred HHHHhhCCEEEEecCChhHHHHHHHh-------------CCCCEE-cCCC-CCCCcHH----------------HHHHHH
Confidence 3344568877653 55666666542 134455 6665 5666632 112233
Q ss_pred HHHHHhCCCCCCCCcEEEEecCcccccChhhHHHHHHhhhhCCcEEEEEecCC----hhHHHHHHHHHHHCCCceEEecc
Q 010448 288 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAK 363 (510)
Q Consensus 288 ~~~~~~g~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~~l~i~G~g~----~~~~~~~~~l~~~~~~~v~~~~~ 363 (510)
.+++++|.+. +...|.|+|-. ...=...++.++..+ ++.+.++++.. +++.+.+++.+.+.+..+...
T Consensus 144 Ti~e~~g~~l--~gl~va~vGD~-~~~va~Sl~~~~~~~---G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~-- 215 (335)
T 1dxh_A 144 TMREHSDKPL--HDISYAYLGDA-RNNMGNSLLLIGAKL---GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLT-- 215 (335)
T ss_dssp HHHHTCSSCG--GGCEEEEESCC-SSHHHHHHHHHHHHT---TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEE--
T ss_pred HHHHHcCCCc--CCeEEEEecCC-ccchHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE--
Confidence 4566666211 23689999996 233356667777766 78999999743 345555666666666445433
Q ss_pred CCHHHHHHHHHhCcEEEeCCC
Q 010448 364 FNIPLAHMIIAGADFILIPSR 384 (510)
Q Consensus 364 ~~~~~~~~~~~~adv~v~ps~ 384 (510)
-+ +.+.+..+|++.....
T Consensus 216 ~d---~~eav~~aDvvytd~w 233 (335)
T 1dxh_A 216 ED---PKEAVKGVDFVHTDVW 233 (335)
T ss_dssp SC---HHHHTTTCSEEEECCC
T ss_pred eC---HHHHhCCCCEEEeCCc
Confidence 22 2357899999988655
No 186
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=20.32 E-value=3.1e+02 Score=21.33 Aligned_cols=108 Identities=9% Similarity=0.012 Sum_probs=61.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHHh--CcEEEeCCCC-CCccHHHHHHH-HhCCCcEEe
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAM-RYGTVPIVA 405 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--adv~v~ps~~-E~~g~~~~Eam-a~G~Pvv~s 405 (510)
..+++|+-+.+. ....++.+-...+-.+.. ..-+.++.-+++.. -|++++=-.. +.-|..+++.+ ..++|||.-
T Consensus 8 ~~rILiVdD~~~-~~~~l~~~L~~~G~~v~~-~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~l 85 (123)
T 2lpm_A 8 RLRVLVVEDESM-IAMLIEDTLCELGHEVAA-TASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFA 85 (123)
T ss_dssp CCCEEEESSSTT-TSHHHHHHHHHHCCCCCB-CSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCB
T ss_pred CCEEEEEeCCHH-HHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEE
Confidence 567778876542 233444444444422321 12345554445544 4788775544 44677777666 357888754
Q ss_pred c-CCCccceEEcCCceeEeccccccCCCCCccCHHHHHHHHHHHH
Q 010448 406 S-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 449 (510)
Q Consensus 406 ~-~gg~~e~v~~~~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll 449 (510)
. .+.......-+..+|+. .|-+.++|.++|.+++
T Consensus 86 Ta~~~~~~~~~~g~~~yl~----------KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 86 TGYGSKGLDTRYSNIPLLT----------KPFLDSELEAVLVQIS 120 (123)
T ss_dssp CTTCTTSCCSSSCSCSCBC----------SSSSHHHHHHHHSTTC
T ss_pred ecCccHHHHHhCCCCcEEE----------CCCCHHHHHHHHHHHH
Confidence 3 22222222335667776 8999999998886653
No 187
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.22 E-value=2.8e+02 Score=20.78 Aligned_cols=110 Identities=16% Similarity=0.072 Sum_probs=62.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHCCCceEEeccCCHHHHHHHHH---hCcEEEeCCCC-C-CccHHHHHHHH---hCCC
Q 010448 330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---GADFILIPSRF-E-PCGLIQLHAMR---YGTV 401 (510)
Q Consensus 330 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---~adv~v~ps~~-E-~~g~~~~Eama---~G~P 401 (510)
..+++|+.+.+ ...+.+.......+-.+. ...+.+.....+. ..|++++-... + ..|..+++.+. ..+|
T Consensus 5 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ 81 (132)
T 2rdm_A 5 AVTILLADDEA-ILLLDFESTLTDAGFLVT--AVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMP 81 (132)
T ss_dssp SCEEEEECSSH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEcCcH-HHHHHHHHHHHHcCCEEE--EECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCC
Confidence 45777777654 234445555445443343 2234444434444 35888875544 3 45777766654 3677
Q ss_pred cEEecCCCccceEEcC--CceeEeccccccCCCCCccCHHHHHHHHHHHHHhh
Q 010448 402 PIVASTGGLVDTVEEG--FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 452 (510)
Q Consensus 402 vv~s~~gg~~e~v~~~--~~G~l~~~~~~~~~~~~~~d~~~la~~i~~ll~~~ 452 (510)
+|......-.+....+ ..+++. .|-+.+++..+|.+++...
T Consensus 82 ii~~s~~~~~~~~~~~~~~~~~l~----------kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDSIILE----------KPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTCEEEE----------SSCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCccHHHHHhhcCCcceEe----------CCCCHHHHHHHHHHHHhcC
Confidence 7755332222222211 125776 8999999999999988763
No 188
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=20.17 E-value=45 Score=29.71 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=15.7
Q ss_pred hhHHHHHHHCCCcEEEEee
Q 010448 7 TKLDSFIQANGHRVMTIAP 25 (510)
Q Consensus 7 ~~la~~l~~~Gh~V~vi~p 25 (510)
..+|++|+++|++|+++..
T Consensus 38 ~aiA~~~~~~Ga~V~l~~~ 56 (226)
T 1u7z_A 38 FAIAAAAARRGANVTLVSG 56 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEEC
Confidence 3678889999999999864
Done!